Query psy2067
Match_columns 225
No_of_seqs 141 out of 1265
Neff 5.3
Searched_HMMs 29240
Date Fri Aug 16 23:29:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2067.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2067hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ani_A Protein GRPE; chaperone 100.0 2.1E-37 7.1E-42 267.7 15.5 136 72-219 57-199 (213)
2 1dkg_A Nucleotide exchange fac 100.0 2.1E-36 7.4E-41 258.7 14.2 134 72-219 40-180 (197)
3 3a6m_A Protein GRPE, HSP-70 co 100.0 6.6E-37 2.3E-41 258.1 4.4 134 72-219 17-154 (177)
4 3swy_A Cyclic nucleotide-gated 91.0 1.5 5.2E-05 28.9 7.5 42 78-119 2-43 (46)
5 3swf_A CGMP-gated cation chann 89.4 3.2 0.00011 29.9 8.8 46 78-123 4-49 (74)
6 2v66_B Nuclear distribution pr 84.4 12 0.00042 28.7 11.0 71 74-144 3-75 (111)
7 3he5_A Synzip1; heterodimeric 82.7 4.2 0.00014 26.3 5.8 42 71-112 7-48 (49)
8 3etw_A Adhesin A; antiparallel 74.6 19 0.00065 28.0 8.5 36 93-140 69-104 (119)
9 2v71_A Nuclear distribution pr 73.3 39 0.0013 28.1 12.6 65 80-144 62-128 (189)
10 2avr_X Adhesion A; antiparalle 68.3 29 0.00098 27.0 8.2 36 93-140 69-104 (119)
11 3efg_A Protein SLYX homolog; x 67.0 21 0.00072 25.5 6.8 53 67-119 7-59 (78)
12 2yy0_A C-MYC-binding protein; 61.8 11 0.00039 25.1 4.2 29 74-102 19-47 (53)
13 2yy0_A C-MYC-binding protein; 59.1 16 0.00056 24.3 4.6 28 70-97 22-49 (53)
14 3ol1_A Vimentin; structural ge 58.2 58 0.002 24.7 10.8 72 67-140 13-84 (119)
15 3mq7_A Bone marrow stromal ant 57.7 29 0.00098 27.0 6.4 33 80-112 70-102 (121)
16 3plt_A Sphingolipid long chain 55.6 93 0.0032 26.7 9.9 65 75-146 132-196 (234)
17 1wt6_A Myotonin-protein kinase 54.5 51 0.0017 24.0 6.9 39 75-113 32-70 (81)
18 2jee_A YIIU; FTSZ, septum, coi 54.2 60 0.002 23.6 9.5 41 70-110 9-49 (81)
19 4etp_A Kinesin-like protein KA 50.2 47 0.0016 30.3 7.7 38 77-114 6-43 (403)
20 3ra3_A P1C; coiled coil domain 47.6 30 0.001 19.9 3.7 25 70-94 3-27 (28)
21 3nmd_A CGMP dependent protein 44.8 41 0.0014 23.9 5.0 23 83-105 42-64 (72)
22 3hnw_A Uncharacterized protein 44.6 1E+02 0.0035 24.0 7.9 32 77-108 78-109 (138)
23 1gk6_A Vimentin; intermediate 44.6 68 0.0023 21.4 6.2 39 81-119 7-48 (59)
24 2zqm_A Prefoldin beta subunit 44.1 79 0.0027 22.9 6.9 42 72-113 68-109 (117)
25 2xv5_A Lamin-A/C; structural p 44.0 82 0.0028 22.2 8.2 47 73-119 4-53 (74)
26 1ci6_A Transcription factor AT 42.1 77 0.0026 21.4 6.0 35 74-108 23-57 (63)
27 3na7_A HP0958; flagellar bioge 41.6 1.4E+02 0.0048 25.0 9.0 41 75-115 40-80 (256)
28 4etp_A Kinesin-like protein KA 40.4 67 0.0023 29.3 7.1 50 70-119 6-58 (403)
29 2jee_A YIIU; FTSZ, septum, coi 40.3 97 0.0033 22.4 6.5 19 93-111 53-71 (81)
30 3f6n_A Virion-associated prote 39.6 83 0.0028 24.6 6.4 54 83-136 4-59 (129)
31 2wt7_B Transcription factor MA 39.2 1E+02 0.0034 22.7 6.6 38 75-112 49-86 (90)
32 1t3j_A Mitofusin 1; coiled coi 38.6 1E+02 0.0034 23.0 6.6 36 74-109 54-92 (96)
33 3na7_A HP0958; flagellar bioge 37.7 1.8E+02 0.0062 24.3 12.8 37 75-111 91-127 (256)
34 3mq7_A Bone marrow stromal ant 36.9 99 0.0034 24.0 6.4 40 74-113 71-110 (121)
35 1fxk_A Prefoldin; archaeal pro 36.0 1.2E+02 0.004 21.7 6.7 41 72-112 63-103 (107)
36 1kd8_B GABH BLL, GCN4 acid bas 35.4 71 0.0024 19.8 4.3 25 77-101 4-28 (36)
37 1u2m_A Histone-like protein HL 34.9 28 0.00096 26.5 3.2 49 92-140 64-112 (143)
38 3hnw_A Uncharacterized protein 34.5 1.6E+02 0.0056 22.9 7.7 17 3-19 29-45 (138)
39 3u06_A Protein claret segregat 33.3 1.2E+02 0.0041 27.7 7.6 38 76-113 5-42 (412)
40 3oja_B Anopheles plasmodium-re 32.8 1.6E+02 0.0056 26.9 8.6 18 159-176 563-580 (597)
41 3viq_B Mating-type switching p 32.6 61 0.0021 23.7 4.4 26 78-103 5-30 (85)
42 1x8y_A Lamin A/C; structural p 32.0 1.4E+02 0.0047 21.3 8.1 11 106-116 63-73 (86)
43 4ani_A Protein GRPE; chaperone 31.9 1.5E+02 0.0052 24.9 7.4 60 70-129 62-125 (213)
44 3swk_A Vimentin; cytoskeleton, 30.6 1.5E+02 0.0051 21.2 9.0 64 76-141 2-65 (86)
45 2oxj_A Hybrid alpha/beta pepti 29.9 98 0.0033 18.9 4.4 25 77-101 4-28 (34)
46 3oja_B Anopheles plasmodium-re 29.6 1.1E+02 0.0037 28.2 6.7 34 86-119 528-561 (597)
47 2v71_A Nuclear distribution pr 28.9 1.5E+02 0.005 24.6 6.7 70 75-144 43-114 (189)
48 1g6u_A Domain swapped dimer; d 28.3 1.1E+02 0.0039 19.4 4.6 26 74-99 20-45 (48)
49 3u06_A Protein claret segregat 28.2 1.4E+02 0.0046 27.4 7.1 49 71-119 7-58 (412)
50 3trt_A Vimentin; cytoskeleton, 28.0 1.4E+02 0.0049 20.3 5.7 21 87-107 55-75 (77)
51 2wt7_A Proto-oncogene protein 28.0 1.4E+02 0.0047 20.0 6.0 33 76-108 25-57 (63)
52 4dzn_A Coiled-coil peptide CC- 27.7 1E+02 0.0034 18.3 5.1 21 75-95 3-23 (33)
53 3u59_A Tropomyosin beta chain; 27.7 1.8E+02 0.006 21.1 6.5 31 81-111 23-53 (101)
54 1gd2_E Transcription factor PA 27.6 75 0.0026 22.2 4.1 26 83-108 31-56 (70)
55 2v0o_A FCHO2, FCH domain only 26.7 2.6E+02 0.0089 22.8 10.4 30 86-115 168-197 (276)
56 4dyl_A Tyrosine-protein kinase 26.6 3.4E+02 0.012 24.2 10.1 36 75-110 165-200 (406)
57 3m48_A General control protein 25.5 1E+02 0.0034 18.7 3.8 23 72-94 5-27 (33)
58 2z5i_A TM, general control pro 25.4 1.5E+02 0.005 19.4 5.7 31 80-110 11-41 (52)
59 4emc_A Monopolin complex subun 25.4 2.9E+02 0.01 22.9 9.0 31 74-104 27-57 (190)
60 3s4r_A Vimentin; alpha-helix, 24.9 1.7E+02 0.0058 21.2 5.8 15 79-93 28-42 (93)
61 1jnm_A Proto-oncogene C-JUN; B 24.6 1E+02 0.0035 20.5 4.2 33 75-107 23-55 (62)
62 3m91_A Proteasome-associated A 24.6 1.5E+02 0.0053 19.4 6.9 40 74-113 9-48 (51)
63 3azd_A Short alpha-tropomyosin 24.5 33 0.0011 21.1 1.5 30 74-103 4-33 (37)
64 4dzo_A Mitotic spindle assembl 24.4 1.2E+02 0.0041 23.2 5.1 31 74-104 4-34 (123)
65 3i00_A HIP-I, huntingtin-inter 24.1 2.4E+02 0.0082 21.5 8.4 47 73-119 14-60 (120)
66 3mq9_A Bone marrow stromal ant 23.9 93 0.0032 27.9 5.1 21 70-90 400-420 (471)
67 1go4_E MAD1 (mitotic arrest de 23.8 1.7E+02 0.0059 21.8 5.7 34 73-106 11-44 (100)
68 2zvf_A Alanyl-tRNA synthetase; 23.6 1.3E+02 0.0045 23.2 5.3 29 71-99 29-57 (171)
69 3htk_A Structural maintenance 23.2 1.6E+02 0.0054 19.0 7.3 42 75-116 13-54 (60)
70 1jcd_A Major outer membrane li 23.0 1.7E+02 0.0058 19.3 6.4 26 73-98 10-35 (52)
71 3aco_A Pacsin2, protein kinase 22.6 3.7E+02 0.013 23.1 13.9 47 74-120 192-238 (350)
72 1kd8_A GABH AIV, GCN4 acid bas 22.6 1.1E+02 0.0038 18.9 3.6 24 78-101 5-28 (36)
73 1p9i_A Cortexillin I/GCN4 hybr 21.7 1.3E+02 0.0045 17.6 4.2 22 72-93 4-25 (31)
74 1l8d_A DNA double-strand break 21.7 2.3E+02 0.0078 20.3 6.3 38 75-112 65-102 (112)
75 3i00_A HIP-I, huntingtin-inter 21.6 2.7E+02 0.0093 21.2 6.8 46 67-112 15-64 (120)
76 2l5g_B Putative uncharacterize 21.5 1.7E+02 0.0057 18.7 4.9 28 74-101 9-36 (42)
77 1t2k_D Cyclic-AMP-dependent tr 21.1 1.8E+02 0.0063 19.1 6.5 33 76-108 24-56 (61)
78 2j69_A Bacterial dynamin-like 20.7 1.9E+02 0.0064 27.9 6.8 48 94-141 372-419 (695)
79 1uix_A RHO-associated kinase; 20.5 2.3E+02 0.0079 19.9 9.3 52 75-127 5-63 (71)
80 1ic2_A Tropomyosin alpha chain 20.1 2.3E+02 0.0077 19.7 6.6 32 80-111 5-36 (81)
81 1l8d_A DNA double-strand break 20.1 2.5E+02 0.0085 20.1 6.4 36 76-111 5-40 (112)
No 1
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=100.00 E-value=2.1e-37 Score=267.74 Aligned_cols=136 Identities=29% Similarity=0.295 Sum_probs=126.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhHHHHhhcCCcccccC
Q psy2067 72 IKEELEDLKKQIEALNEKNSDLLDKYKRALADGENARQRFNKQLEESKLYGIQSFCKDLLDIADTLSLANESVPKEEVKD 151 (225)
Q Consensus 72 ~~~~i~~L~~el~~leee~~elkdk~lR~~AEfEN~RkR~~KE~e~akk~aie~f~kdLLpViDnLERAL~~~~~~~~~~ 151 (225)
..++++.|..+++.+++++++++++|+|++|||+|||||+.||++++++||+++|+++||||+|||+||+.+++.
T Consensus 57 ~~~e~~~l~~~l~~l~~e~~el~d~~lR~~AEfeN~RkR~~rE~e~~~~~a~e~~~~~LLpVlDnlerAl~~~~~----- 131 (213)
T 4ani_A 57 TAEELAAAKAQIAELEAKLSEMEHRYLRLYADFENFRRRTRQEMEAAEKYRAQSLASDLLPVLDNFERALKIETD----- 131 (213)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHSCCSC-----
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhccc-----
Confidence 346788899999999999999999999999999999999999999999999999999999999999999998764
Q ss_pred CChhHHhHHHHHHHHHHHHHHHhcccCCCceEeccCCCCCCCCCCccchhhc-------ccCCeeeeeecccchh
Q psy2067 152 SNPHLKSLYEGLLMTDGNLKKHAHPVEYPSVVIIPDSIAVMERISLEQSLSI-------FLANFSVEWLQSPLAK 219 (225)
Q Consensus 152 ~~~~~~~l~~Gvemi~kqL~~vLek~Gvgv~~I~p~~~~~g~~FDP~~heAi-------~~~n~VveV~QkGY~~ 219 (225)
+....+|++||+||+++|.++|+++ ||++|+| +|.+|||+.|+|| .++|+|++|+|+||..
T Consensus 132 -~~~~~~l~eGvemi~k~l~~~L~k~--Gv~~I~~----~Ge~FDP~~HeAv~~v~~~~~~~gtVv~V~qkGY~l 199 (213)
T 4ani_A 132 -NEQAKSILQGMEMVYRSLVDALKKE--GVEAIEA----VGKPFDPYLHQAVMQAEAEGYEPNTVVEELQKGYKL 199 (213)
T ss_dssp -CSTHHHHHHHHHHHHHHHHHHHHHT--TEECCCC----SSSCCCTTTEEEEEEECCSSSCSSSEEEEEECCCEE
T ss_pred -cccHHHHHHHHHHHHHHHHHHHHHC--CCEEeCC----CCCCCCHHHceeeeeecCCCCCCCcEEEEEeCCeEE
Confidence 3357899999999999999999999 7799998 8999999999999 5689999999999963
No 2
>1dkg_A Nucleotide exchange factor GRPE; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: b.73.1.1 h.1.9.1
Probab=100.00 E-value=2.1e-36 Score=258.71 Aligned_cols=134 Identities=20% Similarity=0.250 Sum_probs=114.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhHHHHhhcCCcccccC
Q psy2067 72 IKEELEDLKKQIEALNEKNSDLLDKYKRALADGENARQRFNKQLEESKLYGIQSFCKDLLDIADTLSLANESVPKEEVKD 151 (225)
Q Consensus 72 ~~~~i~~L~~el~~leee~~elkdk~lR~~AEfEN~RkR~~KE~e~akk~aie~f~kdLLpViDnLERAL~~~~~~~~~~ 151 (225)
+..+++.|++++++++. +++++|+|++|||+|||||++||++++++||+++|+++||||+|||+||+.+.+.+
T Consensus 40 ~~~~~~~l~~~l~e~~~---~~~d~~lR~~Ae~eN~rkR~~ke~~~~~~~a~~~~~~~LLpv~DnlerAl~~~~~~---- 112 (197)
T 1dkg_A 40 RDEKVANLEAQLAEAQT---RERDGILRVKAEMENLRRRTELDIEKAHKFALEKFINELLPVIDSLDRALEVADKA---- 112 (197)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSGGGHHHHSHHHHHHHHHHHHCC-------
T ss_pred hHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhccc----
Confidence 34455555555555544 36789999999999999999999999999999999999999999999999987532
Q ss_pred CChhHHhHHHHHHHHHHHHHHHhcccCCCceEeccCCCCCCCCCCccchhhc-------ccCCeeeeeecccchh
Q psy2067 152 SNPHLKSLYEGLLMTDGNLKKHAHPVEYPSVVIIPDSIAVMERISLEQSLSI-------FLANFSVEWLQSPLAK 219 (225)
Q Consensus 152 ~~~~~~~l~~Gvemi~kqL~~vLek~Gvgv~~I~p~~~~~g~~FDP~~heAi-------~~~n~VveV~QkGY~~ 219 (225)
+..+++|++||+||+++|.++|+++ ||++|+| +|.+|||+.|+|| +++|||++|+|+||..
T Consensus 113 -~~~~~~l~~Gv~~~~~~l~~~L~~~--Gv~~i~~----~G~~FDP~~HeAv~~~~~~~~~~~tVv~v~qkGY~l 180 (197)
T 1dkg_A 113 -NPDMSAMVEDIELTLKSMLDVVRKF--GVEVIAE----TNVPLDPNVHQAIAMVESDDVAPGNVLGIMQKGYTL 180 (197)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHTTT--TEEEECC----CSSBCCTTSEEEEEEEECSSSCTTBEEEEEECEEEE
T ss_pred -cchHHHHHHHHHHHHHHHHHHHHHC--CCEEeCC----CCCCCCHHHhheeeeecCCCCCcCeEEEEeeCCeee
Confidence 3356789999999999999999999 7799998 8999999999999 5789999999999964
No 3
>3a6m_A Protein GRPE, HSP-70 cofactor; coiled-coil, four-helix bundle, dimer, chaperone, STRE response; 3.23A {Thermus thermophilus}
Probab=100.00 E-value=6.6e-37 Score=258.12 Aligned_cols=134 Identities=20% Similarity=0.199 Sum_probs=121.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhHHHHhhcCCcccccC
Q psy2067 72 IKEELEDLKKQIEALNEKNSDLLDKYKRALADGENARQRFNKQLEESKLYGIQSFCKDLLDIADTLSLANESVPKEEVKD 151 (225)
Q Consensus 72 ~~~~i~~L~~el~~leee~~elkdk~lR~~AEfEN~RkR~~KE~e~akk~aie~f~kdLLpViDnLERAL~~~~~~~~~~ 151 (225)
+..++..++++++.+++++++++++|+|++|||+|||||++||++++++||+++|+++||||+|||+||+.+.+.
T Consensus 17 ~~~e~~~l~~~~~~l~~e~~e~~d~~lR~~Ae~eN~rkR~~rE~e~~~~~a~e~~~~~LLpVlDnlerAl~~~~~----- 91 (177)
T 3a6m_A 17 VGQEAQALEERLKAAEEELKGLKDKYLRLLADFDNYRKRMEEELKAREREGVLKALRALLPVLDDLDRALEFAEA----- 91 (177)
T ss_dssp THHHHSSTTTSTTGGGGTSSSHHHHHHTTTTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGG-----
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhc-----
Confidence 445666677778888999999999999999999999999999999999999999999999999999999988642
Q ss_pred CChhHHhHHHHHHHHHHHHHHHhcccCCCceEeccCCCCCCCCCCccchhhc----ccCCeeeeeecccchh
Q psy2067 152 SNPHLKSLYEGLLMTDGNLKKHAHPVEYPSVVIIPDSIAVMERISLEQSLSI----FLANFSVEWLQSPLAK 219 (225)
Q Consensus 152 ~~~~~~~l~~Gvemi~kqL~~vLek~Gvgv~~I~p~~~~~g~~FDP~~heAi----~~~n~VveV~QkGY~~ 219 (225)
+ .+++++||+||+++|.++|+++ ||++|+| +|.+|||+.|+|| .++|||++|+|+||..
T Consensus 92 -~--~~~l~~Gv~m~~~~l~~~L~k~--Gv~~i~~----~Ge~FDP~~HeAv~~~~~~~gtVv~v~qkGY~l 154 (177)
T 3a6m_A 92 -S--PESIRQGVRAIRDGFFRILAGL--GVEEVPG----EGEAFDPRYHEAVGLLPGEPGKVAKVFQRGFRM 154 (177)
T ss_dssp -C--HHHHHHHHHHHHHHHHHHHHHT--TCEECCC----TTSBCCTTTEEEEEEEESSTTBEEEEEECCEEE
T ss_pred -c--HHHHHHHHHHHHHHHHHHHHHC--CCEEeCC----CCCCCCHHHhhhhhcccCCcCeEEEEeecCeee
Confidence 2 6789999999999999999999 7799998 8999999999999 2689999999999974
No 4
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=90.95 E-value=1.5 Score=28.86 Aligned_cols=42 Identities=19% Similarity=0.394 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2067 78 DLKKQIEALNEKNSDLLDKYKRALADGENARQRFNKQLEESK 119 (225)
Q Consensus 78 ~L~~el~~leee~~elkdk~lR~~AEfEN~RkR~~KE~e~ak 119 (225)
.+++++..++.-++-+..++.|+.|||+....++.+-+...-
T Consensus 2 dlEekv~~Le~~ld~LqTr~ArLlae~~ssq~KlKqRit~lE 43 (46)
T 3swy_A 2 ALEEKVEQLGSSLDTLQTRFARLLAEYNATQMKMKQRLSQLE 43 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367788889999999999999999999999999888776543
No 5
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=89.45 E-value=3.2 Score=29.95 Aligned_cols=46 Identities=17% Similarity=0.333 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2067 78 DLKKQIEALNEKNSDLLDKYKRALADGENARQRFNKQLEESKLYGI 123 (225)
Q Consensus 78 ~L~~el~~leee~~elkdk~lR~~AEfEN~RkR~~KE~e~akk~ai 123 (225)
.++.++..++.-++-|+.++.|++|||+....++++-+.+.-.+-.
T Consensus 4 dlEEKv~~LE~sld~LQTrfARLLaEy~ssQ~KLKqRit~LE~~~~ 49 (74)
T 3swf_A 4 GLEEKVTRMESSVDLLQTRFARILAEYESMQQKLKQRLTKVEKFLK 49 (74)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3678888899999999999999999999999999888777665433
No 6
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=84.39 E-value=12 Score=28.75 Aligned_cols=71 Identities=15% Similarity=0.252 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhhhHHhhHHHHhhcC
Q psy2067 74 EELEDLKKQIEALNEKNSDLLDKYKRALADGENARQRFNKQLEESKL--YGIQSFCKDLLDIADTLSLANESV 144 (225)
Q Consensus 74 ~~i~~L~~el~~leee~~elkdk~lR~~AEfEN~RkR~~KE~e~akk--~aie~f~kdLLpViDnLERAL~~~ 144 (225)
.....|+.+...|.-+++.|+.+|.....+--+-.-.+++++...+. -....-+++|=-.=|+|+|+-.+.
T Consensus 3 k~~rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t 75 (111)
T 2v66_B 3 QRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRAT 75 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHH
Confidence 35678999999999999999999999999988888888998887654 455666777777889999996664
No 7
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=82.67 E-value=4.2 Score=26.31 Aligned_cols=42 Identities=21% Similarity=0.283 Sum_probs=28.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2067 71 KIKEELEDLKKQIEALNEKNSDLLDKYKRALADGENARQRFN 112 (225)
Q Consensus 71 ~~~~~i~~L~~el~~leee~~elkdk~lR~~AEfEN~RkR~~ 112 (225)
+++.++..|+.+-+.++++.-.-+|-..++..|+.|+|++.+
T Consensus 7 qlenevaslenenetlkkknlhkkdliaylekeianlrkkie 48 (49)
T 3he5_A 7 QLENEVASLENENETLKKKNLHKKDLIAYLEKEIANLRKKIE 48 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhhcccHHHHHhcccHHHHHHHHHHHHHHHHHHhc
Confidence 344555666666666666655566777788889999998764
No 8
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=74.60 E-value=19 Score=27.99 Aligned_cols=36 Identities=14% Similarity=0.302 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhHHHH
Q psy2067 93 LLDKYKRALADGENARQRFNKQLEESKLYGIQSFCKDLLDIADTLSLA 140 (225)
Q Consensus 93 lkdk~lR~~AEfEN~RkR~~KE~e~akk~aie~f~kdLLpViDnLERA 140 (225)
+++.|..+.+.+.++++-+++++..-. -|||||+++
T Consensus 69 yk~~y~~l~k~Y~~~~keLd~~ik~qe------------kiIdnFE~i 104 (119)
T 3etw_A 69 YKSQYQELASKYEDALKKLEAEMEQQK------------AVISDFEKI 104 (119)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHH
Confidence 678888888888888888888776554 468999986
No 9
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=73.30 E-value=39 Score=28.15 Aligned_cols=65 Identities=14% Similarity=0.228 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhhhHHhhHHHHhhcC
Q psy2067 80 KKQIEALNEKNSDLLDKYKRALADGENARQRFNKQLEESK--LYGIQSFCKDLLDIADTLSLANESV 144 (225)
Q Consensus 80 ~~el~~leee~~elkdk~lR~~AEfEN~RkR~~KE~e~ak--k~aie~f~kdLLpViDnLERAL~~~ 144 (225)
..++..+..++..|+++|..+..+..+--..+++++...+ .-....-+.+|=-.-|+|+|+..+.
T Consensus 62 ~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~ 128 (189)
T 2v71_A 62 QADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRAT 128 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 3333334444444444444444444444444444433322 2233344555556678888886553
No 10
>2avr_X Adhesion A; antiparallel helix-loop-helix, leucine chain; HET: FLC; 1.90A {Fusobacterium nucleatum} PDB: 3etw_A 2gkq_A 2bc6_A 3etx_A 3ety_A 2gld_A 3etz_A 2gl2_A
Probab=68.28 E-value=29 Score=27.03 Aligned_cols=36 Identities=14% Similarity=0.302 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhHHHH
Q psy2067 93 LLDKYKRALADGENARQRFNKQLEESKLYGIQSFCKDLLDIADTLSLA 140 (225)
Q Consensus 93 lkdk~lR~~AEfEN~RkR~~KE~e~akk~aie~f~kdLLpViDnLERA 140 (225)
+++.|.-+...|.++++-+++++.+-. .|||||+..
T Consensus 69 yK~eY~~L~KkYk~~~~~Ld~eI~~qe------------~iI~nFe~I 104 (119)
T 2avr_X 69 YKSQYQELASKYEDALKKLEAEMEQQK------------AVISDFEKI 104 (119)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHH
Confidence 578888999999999999988887655 457777653
No 11
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=67.04 E-value=21 Score=25.51 Aligned_cols=53 Identities=15% Similarity=0.233 Sum_probs=43.6
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2067 67 NVDPKIKEELEDLKKQIEALNEKNSDLLDKYKRALADGENARQRFNKQLEESK 119 (225)
Q Consensus 67 ~~~~~~~~~i~~L~~el~~leee~~elkdk~lR~~AEfEN~RkR~~KE~e~ak 119 (225)
-.+..++.++..|+.+++-.+.-+++|.+-+.+.+.+++-+++++..=.++.+
T Consensus 7 ~~~~~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~ 59 (78)
T 3efg_A 7 PRDQELEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLG 59 (78)
T ss_dssp -CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677888999999999999999999999999999999998888765444443
No 12
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=61.84 E-value=11 Score=25.08 Aligned_cols=29 Identities=24% Similarity=0.410 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2067 74 EELEDLKKQIEALNEKNSDLLDKYKRALA 102 (225)
Q Consensus 74 ~~i~~L~~el~~leee~~elkdk~lR~~A 102 (225)
.+++.|+.+.++|+.++..|+.+..-+.+
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~ 47 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKA 47 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555555555555554444444333
No 13
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=59.10 E-value=16 Score=24.28 Aligned_cols=28 Identities=32% Similarity=0.465 Sum_probs=16.4
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2067 70 PKIKEELEDLKKQIEALNEKNSDLLDKY 97 (225)
Q Consensus 70 ~~~~~~i~~L~~el~~leee~~elkdk~ 97 (225)
+++..++.+|+.++..|.+++++++.++
T Consensus 22 eaLk~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 22 ELLRLELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666666665554
No 14
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=58.23 E-value=58 Score=24.68 Aligned_cols=72 Identities=15% Similarity=0.232 Sum_probs=52.4
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhHHHH
Q psy2067 67 NVDPKIKEELEDLKKQIEALNEKNSDLLDKYKRALADGENARQRFNKQLEESKLYGIQSFCKDLLDIADTLSLA 140 (225)
Q Consensus 67 ~~~~~~~~~i~~L~~el~~leee~~elkdk~lR~~AEfEN~RkR~~KE~e~akk~aie~f~kdLLpViDnLERA 140 (225)
++...-...+..|+.++..+..+...+.-.+-.++...+.||.|++.|+.. ...+++=+..|=.++|+.-.+
T Consensus 13 ~~~~~ye~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E~~~--r~~~E~di~~lrK~lD~~~l~ 84 (119)
T 3ol1_A 13 RLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQ--REEAENTLQSFRQDVDNASLA 84 (119)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH--HHHHHHHHHHhhhcccHHHHH
Confidence 555556677888888888888888888888888888888899999887643 445555555565666765544
No 15
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=57.70 E-value=29 Score=27.04 Aligned_cols=33 Identities=27% Similarity=0.322 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2067 80 KKQIEALNEKNSDLLDKYKRALADGENARQRFN 112 (225)
Q Consensus 80 ~~el~~leee~~elkdk~lR~~AEfEN~RkR~~ 112 (225)
.+++.+|+.++..|+.++..+.|+.+-+|+-.+
T Consensus 70 q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~ 102 (121)
T 3mq7_A 70 QKKVEELEGEITTLNHKLQDASAEVERLRRENQ 102 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Confidence 455777777778888888888888877776554
No 16
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=55.56 E-value=93 Score=26.74 Aligned_cols=65 Identities=12% Similarity=0.003 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhHHHHhhcCCc
Q psy2067 75 ELEDLKKQIEALNEKNSDLLDKYKRALADGENARQRFNKQLEESKLYGIQSFCKDLLDIADTLSLANESVPK 146 (225)
Q Consensus 75 ~i~~L~~el~~leee~~elkdk~lR~~AEfEN~RkR~~KE~e~akk~aie~f~kdLLpViDnLERAL~~~~~ 146 (225)
++..|+.++..++.+ .+-+-|.+.|++|+.-||--..+--|...++..+.=+..-=.+-+..++.
T Consensus 132 kl~~LeqELvraEae-------~lvaEAqL~n~kR~~lKEa~~~~f~Al~E~aEK~~ila~~gk~Ll~lldd 196 (234)
T 3plt_A 132 KIPVLEQELVRAEAE-------SLVAEAQLSNITREKLKAAYSYMFDSLRELSEKFALIAGYGKALLELLDD 196 (234)
T ss_dssp HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred hHHHHHHHHHHHHHH-------hhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 344444444444433 35577899999999999999998888887777776666554444555543
No 17
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=54.52 E-value=51 Score=23.97 Aligned_cols=39 Identities=10% Similarity=0.180 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2067 75 ELEDLKKQIEALNEKNSDLLDKYKRALADGENARQRFNK 113 (225)
Q Consensus 75 ~i~~L~~el~~leee~~elkdk~lR~~AEfEN~RkR~~K 113 (225)
++...+...-..+.++.+...+..-+.+|++++++++..
T Consensus 32 ELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~ee 70 (81)
T 1wt6_A 32 EMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMEL 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444455666677777777788888888887765
No 18
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=54.19 E-value=60 Score=23.55 Aligned_cols=41 Identities=17% Similarity=0.255 Sum_probs=31.7
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2067 70 PKIKEELEDLKKQIEALNEKNSDLLDKYKRALADGENARQR 110 (225)
Q Consensus 70 ~~~~~~i~~L~~el~~leee~~elkdk~lR~~AEfEN~RkR 110 (225)
++++.+|..+-..|.-++-++++++.+...+..+.+.+|..
T Consensus 9 eqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~ 49 (81)
T 2jee_A 9 EKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQ 49 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45667777777778888888888988888888888776553
No 19
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=50.23 E-value=47 Score=30.30 Aligned_cols=38 Identities=29% Similarity=0.295 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2067 77 EDLKKQIEALNEKNSDLLDKYKRALADGENARQRFNKQ 114 (225)
Q Consensus 77 ~~L~~el~~leee~~elkdk~lR~~AEfEN~RkR~~KE 114 (225)
..++.++..++++..++...+..+.++++-++.++.++
T Consensus 6 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 43 (403)
T 4etp_A 6 AALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKE 43 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444333
No 20
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=47.56 E-value=30 Score=19.92 Aligned_cols=25 Identities=28% Similarity=0.361 Sum_probs=18.1
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHH
Q psy2067 70 PKIKEELEDLKKQIEALNEKNSDLL 94 (225)
Q Consensus 70 ~~~~~~i~~L~~el~~leee~~elk 94 (225)
++++=+.+.|+++++.++.++..++
T Consensus 3 dalefendaleqkiaalkqkiaslk 27 (28)
T 3ra3_A 3 DALEFENDALEQKIAALKQKIASLK 27 (28)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHhccHHHHHHHHHHHHHHHHhc
Confidence 4566677778888888887777654
No 21
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=44.78 E-value=41 Score=23.93 Aligned_cols=23 Identities=9% Similarity=0.001 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy2067 83 IEALNEKNSDLLDKYKRALADGE 105 (225)
Q Consensus 83 l~~leee~~elkdk~lR~~AEfE 105 (225)
|+.+++++.+.......++.+++
T Consensus 42 I~eLEk~L~ekd~eI~~LqseLD 64 (72)
T 3nmd_A 42 IDELELELDQKDELIQMLQNELD 64 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 22
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=44.62 E-value=1e+02 Score=24.03 Aligned_cols=32 Identities=22% Similarity=0.238 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2067 77 EDLKKQIEALNEKNSDLLDKYKRALADGENAR 108 (225)
Q Consensus 77 ~~L~~el~~leee~~elkdk~lR~~AEfEN~R 108 (225)
+.|+.+++.+.+++.+|+..+..++-..++.+
T Consensus 78 ~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~ 109 (138)
T 3hnw_A 78 DSLSLDIENKDKEIYDLKHELIAAQIKAESSA 109 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444433
No 23
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=44.58 E-value=68 Score=21.41 Aligned_cols=39 Identities=21% Similarity=0.260 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Q psy2067 81 KQIEALNEKNSDLLDKYKRAL---ADGENARQRFNKQLEESK 119 (225)
Q Consensus 81 ~el~~leee~~elkdk~lR~~---AEfEN~RkR~~KE~e~ak 119 (225)
..+..++.++..++....+.. .+.=|+|-+++-|+..-+
T Consensus 7 ~~i~~le~el~~~r~e~~~q~~eYq~LlniK~~Le~EIatYR 48 (59)
T 1gk6_A 7 DKVEELLSKNYHLENEVARLKKLVGDLLNVKMALDIEIATYR 48 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 334444444444443333333 334466666666665444
No 24
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=44.14 E-value=79 Score=22.95 Aligned_cols=42 Identities=17% Similarity=0.215 Sum_probs=32.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2067 72 IKEELEDLKKQIEALNEKNSDLLDKYKRALADGENARQRFNK 113 (225)
Q Consensus 72 ~~~~i~~L~~el~~leee~~elkdk~lR~~AEfEN~RkR~~K 113 (225)
..+-...|+..++.++..++.+..++.++..++..++..+..
T Consensus 68 ~~ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~ 109 (117)
T 2zqm_A 68 KDKAVAELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQS 109 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667778888888888888888888888888888776654
No 25
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=44.02 E-value=82 Score=22.20 Aligned_cols=47 Identities=4% Similarity=0.185 Sum_probs=29.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Q psy2067 73 KEELEDLKKQIEALNEKNSDLLDKYKRALAD---GENARQRFNKQLEESK 119 (225)
Q Consensus 73 ~~~i~~L~~el~~leee~~elkdk~lR~~AE---fEN~RkR~~KE~e~ak 119 (225)
..+.+.++..+..++.++..++....+...| .=|+|-+++.|+..-+
T Consensus 4 ~~e~~~~~~~i~~lE~eL~~~r~e~~~ql~EYq~LlniKl~Le~EIatYR 53 (74)
T 2xv5_A 4 ARERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYR 53 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666777777776666655555444 4477777777776555
No 26
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=42.12 E-value=77 Score=21.37 Aligned_cols=35 Identities=20% Similarity=0.247 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2067 74 EELEDLKKQIEALNEKNSDLLDKYKRALADGENAR 108 (225)
Q Consensus 74 ~~i~~L~~el~~leee~~elkdk~lR~~AEfEN~R 108 (225)
.....|..+...|+.+..+|+.+...+..|...+|
T Consensus 23 ~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk 57 (63)
T 1ci6_A 23 AEQEALTGECKELEKKNEALKERADSLAKEIQYLK 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666677777777777777766666666554
No 27
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=41.61 E-value=1.4e+02 Score=25.05 Aligned_cols=41 Identities=15% Similarity=0.105 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2067 75 ELEDLKKQIEALNEKNSDLLDKYKRALADGENARQRFNKQL 115 (225)
Q Consensus 75 ~i~~L~~el~~leee~~elkdk~lR~~AEfEN~RkR~~KE~ 115 (225)
++..++..+..++.++.++.....++..+.+-.+.|..+-.
T Consensus 40 ~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~ 80 (256)
T 3na7_A 40 DKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQ 80 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555555555555555555555555555554433
No 28
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=40.36 E-value=67 Score=29.26 Aligned_cols=50 Identities=30% Similarity=0.392 Sum_probs=35.7
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Q psy2067 70 PKIKEELEDLKKQIEALNEKNSDLLDKYKRALA---DGENARQRFNKQLEESK 119 (225)
Q Consensus 70 ~~~~~~i~~L~~el~~leee~~elkdk~lR~~A---EfEN~RkR~~KE~e~ak 119 (225)
++++.++..|+++..+++.++++++..+.++.+ +-+..||++..++.+.+
T Consensus 6 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elk 58 (403)
T 4etp_A 6 AALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELR 58 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 456677888888888888888777766665554 34457888888877754
No 29
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=40.31 E-value=97 Score=22.41 Aligned_cols=19 Identities=11% Similarity=0.113 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy2067 93 LLDKYKRALADGENARQRF 111 (225)
Q Consensus 93 lkdk~lR~~AEfEN~RkR~ 111 (225)
+.....+++.|-.+...|+
T Consensus 53 L~~en~qLk~E~~~wq~Rl 71 (81)
T 2jee_A 53 LERENNHLKEQQNGWQERL 71 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555444
No 30
>3f6n_A Virion-associated protein; coiled-coil, viral protein, tetramer, DNA-binding, D binding protein; 3.10A {Cauliflower mosaic virus}
Probab=39.56 E-value=83 Score=24.60 Aligned_cols=54 Identities=17% Similarity=0.208 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhhhHHhh
Q psy2067 83 IEALNEKNSDLLDKYKRALADGENARQRFNK--QLEESKLYGIQSFCKDLLDIADT 136 (225)
Q Consensus 83 l~~leee~~elkdk~lR~~AEfEN~RkR~~K--E~e~akk~aie~f~kdLLpViDn 136 (225)
|..++.+++++......+.++..-+.+|..- ....+.+...+++++||-..+|.
T Consensus 4 l~~i~~ei~e~~~~i~~l~~~Ik~il~~~~st~~~~~~lEsiAAKIIkDisdkId~ 59 (129)
T 3f6n_A 4 LNQIQKEVSEILSDQKSMKADIKAILELLGSQNPIKESLETVAAKIVNDLTKLIND 59 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhhhHHHHHHHHHHHHHHHHhc
Confidence 3445555556666666666666666666654 33366677788899999888875
No 31
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=39.22 E-value=1e+02 Score=22.69 Aligned_cols=38 Identities=11% Similarity=0.156 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2067 75 ELEDLKKQIEALNEKNSDLLDKYKRALADGENARQRFN 112 (225)
Q Consensus 75 ~i~~L~~el~~leee~~elkdk~lR~~AEfEN~RkR~~ 112 (225)
....|+.+...+..+++.++....+...|.+.|+.+++
T Consensus 49 q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~~ 86 (90)
T 2wt7_B 49 QKHHLENEKTQLIQQVEQLKQEVSRLARERDAYKVKSE 86 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666677777777777777777777777777664
No 32
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=38.59 E-value=1e+02 Score=23.02 Aligned_cols=36 Identities=28% Similarity=0.329 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Q psy2067 74 EELEDLKKQIEALN---EKNSDLLDKYKRALADGENARQ 109 (225)
Q Consensus 74 ~~i~~L~~el~~le---ee~~elkdk~lR~~AEfEN~Rk 109 (225)
.++..|..++..++ ...+-|+++...+..|.++|..
T Consensus 54 ~EI~~L~~eI~~LE~iqs~aK~LRnKA~~L~~eLe~F~~ 92 (96)
T 1t3j_A 54 EEIARLSKEIDQLEKMQNNSKLLRNKAVQLESELENFSK 92 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 45555555544433 3344566666666666666654
No 33
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=37.67 E-value=1.8e+02 Score=24.34 Aligned_cols=37 Identities=11% Similarity=0.146 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2067 75 ELEDLKKQIEALNEKNSDLLDKYKRALADGENARQRF 111 (225)
Q Consensus 75 ~i~~L~~el~~leee~~elkdk~lR~~AEfEN~RkR~ 111 (225)
++..|..+++.++.++..+.+..+.+....+..+...
T Consensus 91 E~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l 127 (256)
T 3na7_A 91 ELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQ 127 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555555555555555544443
No 34
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=36.95 E-value=99 Score=24.00 Aligned_cols=40 Identities=23% Similarity=0.319 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2067 74 EELEDLKKQIEALNEKNSDLLDKYKRALADGENARQRFNK 113 (225)
Q Consensus 74 ~~i~~L~~el~~leee~~elkdk~lR~~AEfEN~RkR~~K 113 (225)
..+++|+.+|..|..++.+....+.|+.++.+-+.-|...
T Consensus 71 ~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~~~ 110 (121)
T 3mq7_A 71 KKVEELEGEITTLNHKLQDASAEVERLRRENQVLSVRIAD 110 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHhhh
Confidence 3678888888888888888888888888888877666543
No 35
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=36.00 E-value=1.2e+02 Score=21.66 Aligned_cols=41 Identities=15% Similarity=0.261 Sum_probs=30.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2067 72 IKEELEDLKKQIEALNEKNSDLLDKYKRALADGENARQRFN 112 (225)
Q Consensus 72 ~~~~i~~L~~el~~leee~~elkdk~lR~~AEfEN~RkR~~ 112 (225)
..+-...|+..++.++..++.+..++.++..++..++..+.
T Consensus 63 ~~e~~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~l~ 103 (107)
T 1fxk_A 63 KDELTEELQEKLETLQLREKTIERQEERVMKKLQEMQVNIQ 103 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556677788888888888888888888888888776654
No 36
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=35.44 E-value=71 Score=19.78 Aligned_cols=25 Identities=32% Similarity=0.356 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2067 77 EDLKKQIEALNEKNSDLLDKYKRAL 101 (225)
Q Consensus 77 ~~L~~el~~leee~~elkdk~lR~~ 101 (225)
.+|+.+.++|-.+..+|.++..|++
T Consensus 4 nQLE~KVEeLl~~~~~Le~eV~RLk 28 (36)
T 1kd8_B 4 KQLKAKVEELKSKLWHLKNKVARLK 28 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3445555555555555555554443
No 37
>1u2m_A Histone-like protein HLP-1; coiled coil, chaperone; 2.30A {Escherichia coli} SCOP: f.48.1.1 PDB: 1sg2_A
Probab=34.86 E-value=28 Score=26.54 Aligned_cols=49 Identities=6% Similarity=-0.014 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhHHHH
Q psy2067 92 DLLDKYKRALADGENARQRFNKQLEESKLYGIQSFCKDLLDIADTLSLA 140 (225)
Q Consensus 92 elkdk~lR~~AEfEN~RkR~~KE~e~akk~aie~f~kdLLpViDnLERA 140 (225)
.....+.....++..+++..+++...........+...+-+++..+-..
T Consensus 64 ~~~~el~~~~~~~q~~~~~~~~~l~~~~~~~~~~i~~~i~~ai~~vak~ 112 (143)
T 1u2m_A 64 KLEKDVMAQRQTFAQKAQAFEQDRARRSNEERGKLVTRIQTAVKSVANS 112 (143)
T ss_dssp -----------------------CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556667778888888888888877777777777777776666555
No 38
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=34.49 E-value=1.6e+02 Score=22.87 Aligned_cols=17 Identities=24% Similarity=0.462 Sum_probs=7.2
Q ss_pred hhhhhhHhhhhhhhhhc
Q psy2067 3 FLKRLSARQQHFIGELK 19 (225)
Q Consensus 3 ~~~~~~~~~~~~~~~~~ 19 (225)
+|.++..-+-.-+..+.
T Consensus 29 ~L~~vA~~vd~km~ei~ 45 (138)
T 3hnw_A 29 YLQRVASYINNKITEFN 45 (138)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444444
No 39
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=33.32 E-value=1.2e+02 Score=27.75 Aligned_cols=38 Identities=16% Similarity=0.288 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2067 76 LEDLKKQIEALNEKNSDLLDKYKRALADGENARQRFNK 113 (225)
Q Consensus 76 i~~L~~el~~leee~~elkdk~lR~~AEfEN~RkR~~K 113 (225)
...|+.++.+++++++++..+..+++++.+.++.++.+
T Consensus 5 ~~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~ 42 (412)
T 3u06_A 5 HAALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQ 42 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566667777777777777777777776666666544
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=32.77 E-value=1.6e+02 Score=26.94 Aligned_cols=18 Identities=11% Similarity=0.100 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHhcc
Q psy2067 159 LYEGLLMTDGNLKKHAHP 176 (225)
Q Consensus 159 l~~Gvemi~kqL~~vLek 176 (225)
+.+.+.-+..++....++
T Consensus 563 l~~e~~~~~~~~~~l~~~ 580 (597)
T 3oja_B 563 LRQETSLKRQKVKQLEAK 580 (597)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333344444444444333
No 41
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=32.59 E-value=61 Score=23.70 Aligned_cols=26 Identities=23% Similarity=0.415 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2067 78 DLKKQIEALNEKNSDLLDKYKRALAD 103 (225)
Q Consensus 78 ~L~~el~~leee~~elkdk~lR~~AE 103 (225)
.|+++++.|+.+...+...+..+.|+
T Consensus 5 ~L~~~i~~L~~q~~~L~~ei~~~~a~ 30 (85)
T 3viq_B 5 QLESRVHLLEQQKEQLESSLQDALAK 30 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444443
No 42
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=32.04 E-value=1.4e+02 Score=21.28 Aligned_cols=11 Identities=0% Similarity=0.292 Sum_probs=4.7
Q ss_pred HHHHHHHHHHH
Q psy2067 106 NARQRFNKQLE 116 (225)
Q Consensus 106 N~RkR~~KE~e 116 (225)
|+|-+++-|+.
T Consensus 63 nvK~~Le~EIa 73 (86)
T 1x8y_A 63 DIKLALDMEIH 73 (86)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHhhHHHHH
Confidence 34444444443
No 43
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=31.85 E-value=1.5e+02 Score=24.89 Aligned_cols=60 Identities=15% Similarity=0.259 Sum_probs=40.9
Q ss_pred cchhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2067 70 PKIKEELEDLKKQIEALNEKN----SDLLDKYKRALADGENARQRFNKQLEESKLYGIQSFCKD 129 (225)
Q Consensus 70 ~~~~~~i~~L~~el~~leee~----~elkdk~lR~~AEfEN~RkR~~KE~e~akk~aie~f~kd 129 (225)
..+..+++.|++++++++.++ +++.+--.|+..|.+.+++......-...--.+.+|=+.
T Consensus 62 ~~l~~~l~~l~~e~~el~d~~lR~~AEfeN~RkR~~rE~e~~~~~a~e~~~~~LLpVlDnlerA 125 (213)
T 4ani_A 62 AAAKAQIAELEAKLSEMEHRYLRLYADFENFRRRTRQEMEAAEKYRAQSLASDLLPVLDNFERA 125 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 356677888888887776655 567777788888988888877666555444444444433
No 44
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=30.56 E-value=1.5e+02 Score=21.21 Aligned_cols=64 Identities=14% Similarity=0.228 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhHHHHh
Q psy2067 76 LEDLKKQIEALNEKNSDLLDKYKRALADGENARQRFNKQLEESKLYGIQSFCKDLLDIADTLSLAN 141 (225)
Q Consensus 76 i~~L~~el~~leee~~elkdk~lR~~AEfEN~RkR~~KE~e~akk~aie~f~kdLLpViDnLERAL 141 (225)
+..|+.++..+..+...+.-..-.++...+.||.+++.|+ .....+++=+..|=.++|+.-.+.
T Consensus 2 i~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~--~~R~~~E~d~~~LrkdvD~a~l~r 65 (86)
T 3swk_A 2 MRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEM--LQREEAENTLQSFRQDVDNASLAR 65 (86)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhhHHHHHHHH
Confidence 3456666666666666666666666677777888887655 455677777777888888877664
No 45
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=29.87 E-value=98 Score=18.90 Aligned_cols=25 Identities=24% Similarity=0.308 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2067 77 EDLKKQIEALNEKNSDLLDKYKRAL 101 (225)
Q Consensus 77 ~~L~~el~~leee~~elkdk~lR~~ 101 (225)
..|+.+.++|-.+..+|.+...|+.
T Consensus 4 nQLE~kVEeLl~~n~~Le~eV~rLk 28 (34)
T 2oxj_A 4 XQLEXKVXELLXKNXHLEXEVXRLK 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 3455555555555555555555554
No 46
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=29.56 E-value=1.1e+02 Score=28.23 Aligned_cols=34 Identities=0% Similarity=-0.002 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2067 86 LNEKNSDLLDKYKRALADGENARQRFNKQLEESK 119 (225)
Q Consensus 86 leee~~elkdk~lR~~AEfEN~RkR~~KE~e~ak 119 (225)
.++++.+.+..+.++..+.+.++++++...+...
T Consensus 528 ~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~ 561 (597)
T 3oja_B 528 RRTEADAKQKETEDLEQENIALEKQLDNKRAKQA 561 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHH
Confidence 3333444444455445555555555555444443
No 47
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=28.88 E-value=1.5e+02 Score=24.64 Aligned_cols=70 Identities=16% Similarity=0.150 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhhhHHhhHHHHhhcC
Q psy2067 75 ELEDLKKQIEALNEKNSDLLDKYKRALADGENARQRFNKQLEESKL--YGIQSFCKDLLDIADTLSLANESV 144 (225)
Q Consensus 75 ~i~~L~~el~~leee~~elkdk~lR~~AEfEN~RkR~~KE~e~akk--~aie~f~kdLLpViDnLERAL~~~ 144 (225)
--..|+.++..+++...+++.++.++..|.+.+|.++..-..++.. ..+++=+..|-...+.|..-+..+
T Consensus 43 LE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ireL 114 (189)
T 2v71_A 43 LEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVREL 114 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456888999999999999999999999999999999777666443 344445566667777776665443
No 48
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=28.28 E-value=1.1e+02 Score=19.43 Aligned_cols=26 Identities=35% Similarity=0.493 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2067 74 EELEDLKKQIEALNEKNSDLLDKYKR 99 (225)
Q Consensus 74 ~~i~~L~~el~~leee~~elkdk~lR 99 (225)
+++..|+.++..+++++..++.++..
T Consensus 20 eelaaleselqalekklaalksklqa 45 (48)
T 1g6u_A 20 EELAALESELQALEKKLAALKSKLQA 45 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777888888887777776643
No 49
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=28.21 E-value=1.4e+02 Score=27.37 Aligned_cols=49 Identities=12% Similarity=0.231 Sum_probs=30.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Q psy2067 71 KIKEELEDLKKQIEALNEKNSDLLDKYKRALA---DGENARQRFNKQLEESK 119 (225)
Q Consensus 71 ~~~~~i~~L~~el~~leee~~elkdk~lR~~A---EfEN~RkR~~KE~e~ak 119 (225)
.++.++..+++++.+++.++++++..+.++.+ +-+..||++..++.+.+
T Consensus 7 ~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l~ 58 (412)
T 3u06_A 7 ALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLR 58 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 45566666666666666666655554444332 34567888888877765
No 50
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=27.98 E-value=1.4e+02 Score=20.27 Aligned_cols=21 Identities=0% Similarity=0.088 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy2067 87 NEKNSDLLDKYKRALADGENA 107 (225)
Q Consensus 87 eee~~elkdk~lR~~AEfEN~ 107 (225)
+.++.+++-.+.++.+|++++
T Consensus 55 k~Ei~elrr~iq~L~~el~sl 75 (77)
T 3trt_A 55 KQESTEYRRQVQSLTMEVDAL 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 334444444444444444443
No 51
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=27.98 E-value=1.4e+02 Score=19.97 Aligned_cols=33 Identities=18% Similarity=0.325 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2067 76 LEDLKKQIEALNEKNSDLLDKYKRALADGENAR 108 (225)
Q Consensus 76 i~~L~~el~~leee~~elkdk~lR~~AEfEN~R 108 (225)
+..|+.+...|+.+...|...+..+..+...++
T Consensus 25 ~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk 57 (63)
T 2wt7_A 25 TDTLQAETDQLEDEKSALQTEIANLLKEKEKLE 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444455444444444444444444433
No 52
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=27.69 E-value=1e+02 Score=18.30 Aligned_cols=21 Identities=33% Similarity=0.406 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy2067 75 ELEDLKKQIEALNEKNSDLLD 95 (225)
Q Consensus 75 ~i~~L~~el~~leee~~elkd 95 (225)
++..|+++++.+++++..++=
T Consensus 3 eiaalkqeiaalkkeiaalkf 23 (33)
T 4dzn_A 3 EIAALKQEIAALKKEIAALKF 23 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666665543
No 53
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=27.67 E-value=1.8e+02 Score=21.15 Aligned_cols=31 Identities=10% Similarity=0.222 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2067 81 KQIEALNEKNSDLLDKYKRALADGENARQRF 111 (225)
Q Consensus 81 ~el~~leee~~elkdk~lR~~AEfEN~RkR~ 111 (225)
.+...++.++....++...+-.++..++||+
T Consensus 23 d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKi 53 (101)
T 3u59_A 23 DRAEQAEADKKQAEDRCKQLEEEQQGLQKKL 53 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3344444555555555555555666666655
No 54
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=27.58 E-value=75 Score=22.20 Aligned_cols=26 Identities=15% Similarity=0.230 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2067 83 IEALNEKNSDLLDKYKRALADGENAR 108 (225)
Q Consensus 83 l~~leee~~elkdk~lR~~AEfEN~R 108 (225)
+..|+.++.++......+.+|.+-+|
T Consensus 31 i~~LE~~v~~le~~~~~l~~en~~Lr 56 (70)
T 1gd2_E 31 LKALETQVVTLKELHSSTTLENDQLR 56 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444333333334443333
No 55
>2v0o_A FCHO2, FCH domain only protein 2; lipid-binding protein, EFC domain, vesicle trafficking, membrane curvature, endocytosis, exocytosis, F-BAR domain; 2.30A {Homo sapiens}
Probab=26.72 E-value=2.6e+02 Score=22.76 Aligned_cols=30 Identities=20% Similarity=0.266 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2067 86 LNEKNSDLLDKYKRALADGENARQRFNKQL 115 (225)
Q Consensus 86 leee~~elkdk~lR~~AEfEN~RkR~~KE~ 115 (225)
++.+....++.|......+..+|.+...++
T Consensus 168 ~~~k~~ka~~~Y~~~v~~~n~~~~~~~~~~ 197 (276)
T 2v0o_A 168 AAVKSKKATDTYKLYVEKYALAKADFEQKM 197 (276)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344445555555555555555554444
No 56
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens}
Probab=26.61 E-value=3.4e+02 Score=24.15 Aligned_cols=36 Identities=11% Similarity=0.011 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2067 75 ELEDLKKQIEALNEKNSDLLDKYKRALADGENARQR 110 (225)
Q Consensus 75 ~i~~L~~el~~leee~~elkdk~lR~~AEfEN~RkR 110 (225)
+++.++.+..+...++...++.|+...+.+..++.+
T Consensus 165 e~eK~~~k~~k~~~~~~~a~neY~~~l~~~N~~~~~ 200 (406)
T 4dyl_A 165 DRDKAKDKYVRSLWKLFAHHNRYVLGVRAAQLHHQH 200 (406)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555556666666666655555444433
No 57
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=25.53 E-value=1e+02 Score=18.74 Aligned_cols=23 Identities=17% Similarity=0.247 Sum_probs=11.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Q psy2067 72 IKEELEDLKKQIEALNEKNSDLL 94 (225)
Q Consensus 72 ~~~~i~~L~~el~~leee~~elk 94 (225)
++.++++|-.+...|+.++..++
T Consensus 5 LE~kVEeLl~~n~~Le~EV~RLk 27 (33)
T 3m48_A 5 LEAKVEELLSKNWNLENEVARLK 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHH
Confidence 34445555555555555444443
No 58
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=25.42 E-value=1.5e+02 Score=19.43 Aligned_cols=31 Identities=13% Similarity=0.137 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2067 80 KKQIEALNEKNSDLLDKYKRALADGENARQR 110 (225)
Q Consensus 80 ~~el~~leee~~elkdk~lR~~AEfEN~RkR 110 (225)
+....+|++.++++.+.+......+.+++..
T Consensus 11 ERsV~KLek~ID~LEdeL~~eKek~~~i~~e 41 (52)
T 2z5i_A 11 ENEVARLKKLVDDLEDELYAQKLKYKAISEE 41 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3445556666666666555444444444433
No 59
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=25.36 E-value=2.9e+02 Score=22.93 Aligned_cols=31 Identities=13% Similarity=0.049 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2067 74 EELEDLKKQIEALNEKNSDLLDKYKRALADG 104 (225)
Q Consensus 74 ~~i~~L~~el~~leee~~elkdk~lR~~AEf 104 (225)
.++..|..++.....+++.++.++.-+.++.
T Consensus 27 ~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~ 57 (190)
T 4emc_A 27 NENFVLSEKLDTKATEIKQLQKQIDSLNAQV 57 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3344444455555555555555544444444
No 60
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=24.89 E-value=1.7e+02 Score=21.21 Aligned_cols=15 Identities=27% Similarity=0.253 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHH
Q psy2067 79 LKKQIEALNEKNSDL 93 (225)
Q Consensus 79 L~~el~~leee~~el 93 (225)
|+++-..|+.++..+
T Consensus 28 LEqqN~~Le~~i~~l 42 (93)
T 3s4r_A 28 LEQQNKILLAELEQL 42 (93)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444333
No 61
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=24.65 E-value=1e+02 Score=20.48 Aligned_cols=33 Identities=15% Similarity=0.251 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2067 75 ELEDLKKQIEALNEKNSDLLDKYKRALADGENA 107 (225)
Q Consensus 75 ~i~~L~~el~~leee~~elkdk~lR~~AEfEN~ 107 (225)
.+..|+.++..|..+...|...+..+..+...+
T Consensus 23 ~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~L 55 (62)
T 1jnm_A 23 RIARLEEKVKTLKAQNSELASTANMLREQVAQL 55 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555555554433
No 62
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=24.58 E-value=1.5e+02 Score=19.42 Aligned_cols=40 Identities=23% Similarity=0.429 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2067 74 EELEDLKKQIEALNEKNSDLLDKYKRALADGENARQRFNK 113 (225)
Q Consensus 74 ~~i~~L~~el~~leee~~elkdk~lR~~AEfEN~RkR~~K 113 (225)
..+..|+.++..+.++...|.+-+.++..++..++..+++
T Consensus 9 ~r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~ 48 (51)
T 3m91_A 9 RDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDR 48 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777777777777777777777777777665543
No 63
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=24.46 E-value=33 Score=21.12 Aligned_cols=30 Identities=27% Similarity=0.380 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2067 74 EELEDLKKQIEALNEKNSDLLDKYKRALAD 103 (225)
Q Consensus 74 ~~i~~L~~el~~leee~~elkdk~lR~~AE 103 (225)
+.++.++.++..++.+.+++.++..++..+
T Consensus 4 ~~i~avKkKiq~lq~q~d~aee~~~~~~~~ 33 (37)
T 3azd_A 4 SSLEAVRRKIRSLQEQNYHLENEVARLKKL 33 (37)
T ss_dssp --CHHHHHHHHHHHHHTTTTHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777888888888888888887776654
No 64
>4dzo_A Mitotic spindle assembly checkpoint protein MAD1; homodimer, kinetochore, mitosis, spindle checkpoint protein, nucleus, cell cycle; HET: MSE; 1.76A {Homo sapiens}
Probab=24.40 E-value=1.2e+02 Score=23.24 Aligned_cols=31 Identities=29% Similarity=0.463 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2067 74 EELEDLKKQIEALNEKNSDLLDKYKRALADG 104 (225)
Q Consensus 74 ~~i~~L~~el~~leee~~elkdk~lR~~AEf 104 (225)
.++.+|+++++.+++....|++-+.....||
T Consensus 4 ~e~~~l~~qi~~~ekr~~RLKevF~~ks~eF 34 (123)
T 4dzo_A 4 KEVAELKKQVESAELKNQRLKEVFQTKIQEF 34 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666666666666555555554444443
No 65
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=24.11 E-value=2.4e+02 Score=21.51 Aligned_cols=47 Identities=15% Similarity=0.260 Sum_probs=26.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2067 73 KEELEDLKKQIEALNEKNSDLLDKYKRALADGENARQRFNKQLEESK 119 (225)
Q Consensus 73 ~~~i~~L~~el~~leee~~elkdk~lR~~AEfEN~RkR~~KE~e~ak 119 (225)
+..|+.|..+++.++.+++.++-...|...++.+--..++-|.+..+
T Consensus 14 D~~Ie~Lkreie~lk~ele~l~~E~q~~v~ql~~~i~~Le~eL~e~r 60 (120)
T 3i00_A 14 DHLIERLYREISGLKAQLENMKTESQRVVLQLKGHVSELEADLAEQQ 60 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666666665555555555555555555555555444
No 66
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=23.90 E-value=93 Score=27.95 Aligned_cols=21 Identities=14% Similarity=0.347 Sum_probs=8.9
Q ss_pred cchhHHHHHHHHHHHHHHHHH
Q psy2067 70 PKIKEELEDLKKQIEALNEKN 90 (225)
Q Consensus 70 ~~~~~~i~~L~~el~~leee~ 90 (225)
..+...+.++++.+.+++++.
T Consensus 400 ~~~~~~~~~~~~~~~~~~~~~ 420 (471)
T 3mq9_A 400 HLLQQELTEAQKGFQDVEAQA 420 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHh
Confidence 334444444444444444443
No 67
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=23.83 E-value=1.7e+02 Score=21.82 Aligned_cols=34 Identities=26% Similarity=0.340 Sum_probs=21.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2067 73 KEELEDLKKQIEALNEKNSDLLDKYKRALADGEN 106 (225)
Q Consensus 73 ~~~i~~L~~el~~leee~~elkdk~lR~~AEfEN 106 (225)
.+++..|+.+++.|+.+...|+.+...+-.++++
T Consensus 11 ~e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~ 44 (100)
T 1go4_E 11 REEADTLRLKVEELEGERSRLEEEKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577777777777777776666655555444443
No 68
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=23.57 E-value=1.3e+02 Score=23.22 Aligned_cols=29 Identities=10% Similarity=0.115 Sum_probs=17.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2067 71 KIKEELEDLKKQIEALNEKNSDLLDKYKR 99 (225)
Q Consensus 71 ~~~~~i~~L~~el~~leee~~elkdk~lR 99 (225)
.+...++.|..++.+++++++.++.++..
T Consensus 29 ~l~~~v~~l~~e~k~l~ke~~~l~~~~a~ 57 (171)
T 2zvf_A 29 KLPKTVERFFEEWKDQRKEIERLKSVIAD 57 (171)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456666666666666666665555443
No 69
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=23.23 E-value=1.6e+02 Score=19.04 Aligned_cols=42 Identities=12% Similarity=0.160 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2067 75 ELEDLKKQIEALNEKNSDLLDKYKRALADGENARQRFNKQLE 116 (225)
Q Consensus 75 ~i~~L~~el~~leee~~elkdk~lR~~AEfEN~RkR~~KE~e 116 (225)
.+..........+.++..++.++.++.+++.++|..+.+-..
T Consensus 13 ~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~ 54 (60)
T 3htk_A 13 QVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKN 54 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555556666666777777777777777766655433
No 70
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=22.99 E-value=1.7e+02 Score=19.32 Aligned_cols=26 Identities=0% Similarity=0.056 Sum_probs=11.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2067 73 KEELEDLKKQIEALNEKNSDLLDKYK 98 (225)
Q Consensus 73 ~~~i~~L~~el~~leee~~elkdk~l 98 (225)
..++..|..++..|..++..++....
T Consensus 10 ss~V~~L~~kVdqLssdV~al~~~v~ 35 (52)
T 1jcd_A 10 SSDAQTANAKADQASNDANAARSDAQ 35 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444333
No 71
>3aco_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.70A {Homo sapiens}
Probab=22.64 E-value=3.7e+02 Score=23.08 Aligned_cols=47 Identities=19% Similarity=0.366 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2067 74 EELEDLKKQIEALNEKNSDLLDKYKRALADGENARQRFNKQLEESKL 120 (225)
Q Consensus 74 ~~i~~L~~el~~leee~~elkdk~lR~~AEfEN~RkR~~KE~e~akk 120 (225)
.+++.++.++.++..+..+.++.|......+..+|.+...++....+
T Consensus 192 k~~eK~~~k~~k~~~~~~~a~~~Y~~~v~~~n~~~~~~~~~~~~~~~ 238 (350)
T 3aco_A 192 EQLKKLQDKIEKCKQDVLKTKEKYEKSLKELDQGTPQYMENMEQVFE 238 (350)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57788888899999999999999999999999998888877766555
No 72
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=22.60 E-value=1.1e+02 Score=18.87 Aligned_cols=24 Identities=17% Similarity=0.250 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy2067 78 DLKKQIEALNEKNSDLLDKYKRAL 101 (225)
Q Consensus 78 ~L~~el~~leee~~elkdk~lR~~ 101 (225)
+|+.+.++|-.+..+|.+...|+.
T Consensus 5 QLE~kVEeLl~~~~~Le~EV~RL~ 28 (36)
T 1kd8_A 5 QLEAEVEEIESEVWHLENEVARLE 28 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHH
Confidence 344455555555555555555543
No 73
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=21.69 E-value=1.3e+02 Score=17.55 Aligned_cols=22 Identities=23% Similarity=0.345 Sum_probs=9.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH
Q psy2067 72 IKEELEDLKKQIEALNEKNSDL 93 (225)
Q Consensus 72 ~~~~i~~L~~el~~leee~~el 93 (225)
+..-+..|+++-.+++.+++++
T Consensus 4 lnallasleaenkqlkakveel 25 (31)
T 1p9i_A 4 LNALLASLEAENKQLKAKVEEL 25 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444443
No 74
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=21.67 E-value=2.3e+02 Score=20.35 Aligned_cols=38 Identities=8% Similarity=0.091 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2067 75 ELEDLKKQIEALNEKNSDLLDKYKRALADGENARQRFN 112 (225)
Q Consensus 75 ~i~~L~~el~~leee~~elkdk~lR~~AEfEN~RkR~~ 112 (225)
.+.....++..+..++.+++.+...+..+.+.++.++.
T Consensus 65 ~i~~~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~~~ 102 (112)
T 1l8d_A 65 LLSKYHLDLNNSKNTLAKLIDRKSELERELRRIDMEIK 102 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666666666666656555555555544
No 75
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=21.56 E-value=2.7e+02 Score=21.20 Aligned_cols=46 Identities=17% Similarity=0.187 Sum_probs=37.1
Q ss_pred CCCcchhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Q psy2067 67 NVDPKIKEELEDLKKQIEALNEK----NSDLLDKYKRALADGENARQRFN 112 (225)
Q Consensus 67 ~~~~~~~~~i~~L~~el~~leee----~~elkdk~lR~~AEfEN~RkR~~ 112 (225)
..++.+.-+++.|+.+++.+..+ +.+|+.++..+.||++..|.-.+
T Consensus 15 ~~Ie~Lkreie~lk~ele~l~~E~q~~v~ql~~~i~~Le~eL~e~r~~~q 64 (120)
T 3i00_A 15 HLIERLYREISGLKAQLENMKTESQRVVLQLKGHVSELEADLAEQQHLRQ 64 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34777888999999999887655 46899999999999999985433
No 76
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=21.53 E-value=1.7e+02 Score=18.70 Aligned_cols=28 Identities=14% Similarity=0.316 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2067 74 EELEDLKKQIEALNEKNSDLLDKYKRAL 101 (225)
Q Consensus 74 ~~i~~L~~el~~leee~~elkdk~lR~~ 101 (225)
..++.+..+|+..++++.+++.++.-+.
T Consensus 9 qkI~kVdrEI~Kte~kI~~lqkKlkeLe 36 (42)
T 2l5g_B 9 QNMDRVDREITMVEQQISKLKKKQQQLE 36 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566677777777777777777665443
No 77
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=21.11 E-value=1.8e+02 Score=19.05 Aligned_cols=33 Identities=18% Similarity=0.237 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2067 76 LEDLKKQIEALNEKNSDLLDKYKRALADGENAR 108 (225)
Q Consensus 76 i~~L~~el~~leee~~elkdk~lR~~AEfEN~R 108 (225)
+..|+.+...+..+..+|...+..+..+...++
T Consensus 24 ~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk 56 (61)
T 1t2k_D 24 VQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLK 56 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444555555555555555444444444443
No 78
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=20.67 E-value=1.9e+02 Score=27.94 Aligned_cols=48 Identities=8% Similarity=0.077 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhHHHHh
Q psy2067 94 LDKYKRALADGENARQRFNKQLEESKLYGIQSFCKDLLDIADTLSLAN 141 (225)
Q Consensus 94 kdk~lR~~AEfEN~RkR~~KE~e~akk~aie~f~kdLLpViDnLERAL 141 (225)
...+..+....+.++.++.+-.++........+-.-+.-++|.|...+
T Consensus 372 ~~~~~~l~~~~~~~~~~l~~~~~~~~~~v~~~l~~~i~~l~~~f~~~~ 419 (695)
T 2j69_A 372 EPEFNKLTGIRDEFQKEIINTRDTQARTISESFRSYVLNLGNTFENDF 419 (695)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 333333333344444444444444444444444434444456565554
No 79
>1uix_A RHO-associated kinase; coiled-coil, transferase; HET: MSE; 1.80A {Bos taurus} SCOP: h.1.27.1
Probab=20.52 E-value=2.3e+02 Score=19.93 Aligned_cols=52 Identities=15% Similarity=0.205 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2067 75 ELEDLKKQIEALNEKNSDLLDKYKRAL-------ADGENARQRFNKQLEESKLYGIQSFC 127 (225)
Q Consensus 75 ~i~~L~~el~~leee~~elkdk~lR~~-------AEfEN~RkR~~KE~e~akk~aie~f~ 127 (225)
.+..+..+.+++..++....+.+.++. +-...|.+.+..|+ -.+.-|+-+++
T Consensus 5 ~v~~l~~E~eel~~klk~~~ee~~~~~eee~~~~~~k~~lek~L~~E~-~LK~QAVNKLA 63 (71)
T 1uix_A 5 DVANLANEKEELNNKLKEAQEQLSRLKDEEISAAAIKAQFEKQLLTER-TLKTQAVNKLA 63 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 444444444444444444444443333 22335666666666 45666666665
No 80
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=20.14 E-value=2.3e+02 Score=19.71 Aligned_cols=32 Identities=31% Similarity=0.425 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2067 80 KKQIEALNEKNSDLLDKYKRALADGENARQRF 111 (225)
Q Consensus 80 ~~el~~leee~~elkdk~lR~~AEfEN~RkR~ 111 (225)
+.++..++.+.+...+++..+.+++....+|.
T Consensus 5 kkKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~ 36 (81)
T 1ic2_A 5 KKKMQMLKLDKENALDRAEQAEADKKAAEERS 36 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444433
No 81
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=20.11 E-value=2.5e+02 Score=20.15 Aligned_cols=36 Identities=11% Similarity=0.255 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2067 76 LEDLKKQIEALNEKNSDLLDKYKRALADGENARQRF 111 (225)
Q Consensus 76 i~~L~~el~~leee~~elkdk~lR~~AEfEN~RkR~ 111 (225)
+..+..++..+..++.++......+......+++.+
T Consensus 5 ~~~~~~~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l 40 (112)
T 1l8d_A 5 LEELETKKTTIEEERNEITQRIGELKNKIGDLKTAI 40 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555554444444444444333
Done!