RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy2067
(225 letters)
>gnl|CDD|216249 pfam01025, GrpE, GrpE.
Length = 165
Score = 79.6 bits (197), Expect = 8e-19
Identities = 37/100 (37%), Positives = 57/100 (57%), Gaps = 6/100 (6%)
Query: 73 KEELEDLKKQIEALNEKNSDLLDKYKRALADGENARQRFNKQLEESKLYGIQSFCKDLLD 132
++E E L++++E L E+ +L D+ R LA+ EN R+R ++ EE+K Y I+ F KDLL
Sbjct: 10 EDEEEALEEELEELEEEIEELKDRLLRLLAEFENYRKRTEREREEAKKYAIEKFAKDLLP 69
Query: 133 IADTLSLANESVPKEEVKDSNPHLKSLYEGLLMTDGNLKK 172
+ D L A + + E +KSL EG+ M L K
Sbjct: 70 VLDNLERALAAAKENED------VKSLVEGVEMILKQLLK 103
>gnl|CDD|172630 PRK14141, PRK14141, heat shock protein GrpE; Provisional.
Length = 209
Score = 77.0 bits (190), Expect = 2e-17
Identities = 34/123 (27%), Positives = 66/123 (53%), Gaps = 1/123 (0%)
Query: 45 ESESKKDDSDSTASSSSTESTSNVDPKIKEELEDLKKQIEALNEKNSDLLDKYKRALADG 104
+ ++K + A ++ P E+ + +EAL +N++L D+ R A+
Sbjct: 3 DEKNKNGNPADAARDANNPVDREAKPYEMEDDPE-PDPLEALKAENAELKDRMLRLAAEM 61
Query: 105 ENARQRFNKQLEESKLYGIQSFCKDLLDIADTLSLANESVPKEEVKDSNPHLKSLYEGLL 164
EN R+R + + +++ YGI F +D+L ++D L A +++P E ++ LK+L EG+
Sbjct: 62 ENLRKRTQRDVADARAYGIAGFARDMLSVSDNLRRALDAIPAEARAAADAGLKALIEGVE 121
Query: 165 MTD 167
MT+
Sbjct: 122 MTE 124
>gnl|CDD|238252 cd00446, GrpE, GrpE is the adenine nucleotide exchange factor of
DnaK (Hsp70)-type ATPases. The GrpE dimer binds to the
ATPase domain of Hsp70 catalyzing the dissociation of
ADP, which enables rebinding of ATP, one step in the
Hsp70 reaction cycle in protein folding. In eukaryotes,
only the mitochondrial Hsp70, not the cytosolic form, is
GrpE dependent.
Length = 137
Score = 73.7 bits (182), Expect = 7e-17
Identities = 35/81 (43%), Positives = 47/81 (58%), Gaps = 6/81 (7%)
Query: 92 DLLDKYKRALADGENARQRFNKQLEESKLYGIQSFCKDLLDIADTLSLANESVPKEEVKD 151
+L DK RALA+ EN R+R ++ EE++ Y I+ F KDLL + D L A E+ KEE
Sbjct: 3 ELKDKLLRALAEFENYRKRTEREREEARKYAIEKFAKDLLPVLDNLERALEAAKKEE--- 59
Query: 152 SNPHLKSLYEGLLMTDGNLKK 172
LK+L EG+ MT L
Sbjct: 60 ---ELKNLVEGVEMTLKQLLD 77
>gnl|CDD|223649 COG0576, GrpE, Molecular chaperone GrpE (heat shock protein)
[Posttranslational modification, protein turnover,
chaperones].
Length = 193
Score = 68.5 bits (168), Expect = 2e-14
Identities = 43/132 (32%), Positives = 71/132 (53%), Gaps = 5/132 (3%)
Query: 41 NKKEESESKKDDSDSTASSSSTESTSNVDPKIKEELEDLKKQIEALNEKNSDLLDKYKRA 100
+K++++E + A S E +P+ + ELE+ +++I L + +L DKY RA
Sbjct: 3 DKEQKTEEPDAEETEEAEKSEEEEAEEEEPEEENELEEEQQEIAELEAQLEELKDKYLRA 62
Query: 101 LADGENARQRFNKQLEESKLYGIQSFCKDLLDIADTLSLANESVPKEEVKDSNPHLKSLY 160
A+ EN R+R ++ EE+K Y I+ F KDLL + D L A E+ ++ + K+L
Sbjct: 63 QAEFENLRKRTEREREEAKKYAIEKFAKDLLPVIDNLERALEAAEDDKDPE-----KALL 117
Query: 161 EGLLMTDGNLKK 172
EG+ MT L
Sbjct: 118 EGVEMTLDQLLD 129
>gnl|CDD|237621 PRK14139, PRK14139, heat shock protein GrpE; Provisional.
Length = 185
Score = 58.1 bits (141), Expect = 1e-10
Identities = 28/127 (22%), Positives = 61/127 (48%), Gaps = 12/127 (9%)
Query: 40 ENKKEESESKKDDSDSTASSSSTESTSNVDPKIKEELEDLKKQIEALNEKNSDLLDKYKR 99
EN ++ ++ + A+ ++ + + + L+ ++ K ++L D + R
Sbjct: 2 ENTQQNPSEQEAEEAGAAAQAAAAAAAAAED----AAPALEAELAEAEAKAAELQDSFLR 57
Query: 100 ALADGENARQRFNKQLEESKLYGIQSFCKDLLDIADTLSLANESVPKEEVKDSNPHLKSL 159
A A+ EN R+R + + ++ + I+SF + LL + D+L A + D + L+ L
Sbjct: 58 AKAETENVRRRAQEDVAKAHKFAIESFAESLLPVKDSLEAA--------LADESGDLEKL 109
Query: 160 YEGLLMT 166
EG+ +T
Sbjct: 110 REGVELT 116
>gnl|CDD|237627 PRK14155, PRK14155, heat shock protein GrpE; Provisional.
Length = 208
Score = 58.1 bits (140), Expect = 2e-10
Identities = 32/97 (32%), Positives = 56/97 (57%), Gaps = 3/97 (3%)
Query: 74 EELEDLKKQIEALNEKNSDLLDKYKRALADGENARQRFNKQLEESKLYGIQSFCKDLLDI 133
E +D ++IEAL + + L D+ R A+ EN ++R +++ +++ Y IQ F +DLL
Sbjct: 13 FEADDAAQEIEALKAEVAALKDQALRYAAEAENTKRRAEREMNDARAYAIQKFARDLLGA 72
Query: 134 ADTLSLANESVPKEEVKDSNPHLKSLYEGLLMTDGNL 170
AD L A + PK+ ++P +K+ G+ MT+ L
Sbjct: 73 ADNLGRATAASPKDS---ADPAVKNFIIGVEMTEKEL 106
>gnl|CDD|237631 PRK14162, PRK14162, heat shock protein GrpE; Provisional.
Length = 194
Score = 57.9 bits (140), Expect = 2e-10
Identities = 42/136 (30%), Positives = 66/136 (48%), Gaps = 6/136 (4%)
Query: 37 SKAENKKEESESKKDDSDSTASSSSTESTSNVDPKIKEELEDLKKQIEALNEKNSDLLDK 96
SK E E+ +++ +D + E+ D + + +EDL+K+I L KN DL DK
Sbjct: 2 SKEEFPSEKDLPQEETTDEAPKKEAKEAPKEEDQEKQNPVEDLEKEIADLKAKNKDLEDK 61
Query: 97 YKRALADGENARQRFNKQLEESKLYGIQSFCKDLLDIADTLSLANESVPKEEVKDSNPHL 156
Y R+ A+ +N + R+ K+ + Y QS KD+L D L A +E
Sbjct: 62 YLRSQAEIQNMQNRYAKERAQLIKYESQSLAKDVLPAMDNLERALAVKADDEAA------ 115
Query: 157 KSLYEGLLMTDGNLKK 172
K L +G+ MT +L K
Sbjct: 116 KQLKKGVQMTLDHLVK 131
>gnl|CDD|237630 PRK14161, PRK14161, heat shock protein GrpE; Provisional.
Length = 178
Score = 51.9 bits (124), Expect = 2e-08
Identities = 36/108 (33%), Positives = 56/108 (51%), Gaps = 13/108 (12%)
Query: 73 KEELEDLKKQIEALNEKNSDLLDKYKRALADGENARQRFNKQLEESKLYGIQSFCKDLLD 132
E+ LK +IE +L DK R A+ +N R+R K +E+K Y I +F K+LL+
Sbjct: 25 NPEITALKAEIE-------ELKDKLIRTTAEIDNTRKRLEKARDEAKDYAIATFAKELLN 77
Query: 133 IADTLSLANESVPKEEVKDSNPHLKSLYEGLLMTDGNLKK--HAHPVE 178
++D LS A P +S+ + ++ G+ MT L K H H +E
Sbjct: 78 VSDNLSRALAHKP----ANSDVEVTNIIAGVQMTKDELDKVFHKHHIE 121
>gnl|CDD|237622 PRK14140, PRK14140, heat shock protein GrpE; Provisional.
Length = 191
Score = 50.0 bits (120), Expect = 9e-08
Identities = 32/127 (25%), Positives = 56/127 (44%), Gaps = 6/127 (4%)
Query: 40 ENKKEESESKKDDSDSTASSSSTESTSNVDPKIKEELEDLKKQIEALNEKNSDLLDKYKR 99
E ++ E ++ A E + + E L++ + +I L K +L ++Y R
Sbjct: 3 EKNEQVEEEVEETEVEEAVEDEVEEETVEEESEAELLDEEQAKIAELEAKLDELEERYLR 62
Query: 100 ALADGENARQRFNKQLEESKLYGIQSFCKDLLDIADTLSLANESVPKEEVKDSNPHLKSL 159
AD EN ++R K+ E ++ Y QS DLL D A +++ + KSL
Sbjct: 63 LQADFENYKRRIQKENEAAEKYRAQSLASDLLPALDNFERA------LQIEADDEQTKSL 116
Query: 160 YEGLLMT 166
+G+ M
Sbjct: 117 LKGVEMV 123
>gnl|CDD|184540 PRK14153, PRK14153, heat shock protein GrpE; Provisional.
Length = 194
Score = 50.2 bits (120), Expect = 1e-07
Identities = 27/108 (25%), Positives = 53/108 (49%), Gaps = 2/108 (1%)
Query: 41 NKKEESESKKDDSDSTASSSSTESTSNVDPKIKEELEDLKKQIEALNEKNSDLLDKYKRA 100
KE + K ++S++ S SS E + + ++ D + E E+ L ++ R
Sbjct: 2 TSKEVGKDKAENSEARNSGSSAEEAEELKEEPEDSTADS--ETEKCREEIESLKEQLFRL 59
Query: 101 LADGENARQRFNKQLEESKLYGIQSFCKDLLDIADTLSLANESVPKEE 148
A+ +N R+R +++EE++ + ++ DLL++ D A ES E
Sbjct: 60 AAEFDNFRKRTAREMEENRKFVLEQVLLDLLEVTDNFERALESARTAE 107
>gnl|CDD|172640 PRK14151, PRK14151, heat shock protein GrpE; Provisional.
Length = 176
Score = 45.2 bits (107), Expect = 4e-06
Identities = 29/102 (28%), Positives = 52/102 (50%), Gaps = 11/102 (10%)
Query: 77 EDLKKQIEALNEKNSDLLDKYKRALADGENARQRFNKQLEESKLYGIQSFCKDLLDIADT 136
+DL +++ L E+ + D+ RA AD +N R+R + +E++ + ++ F DLL + D+
Sbjct: 23 DDLTARVQELEEQLAAAKDQSLRAAADLQNVRRRAEQDVEKAHKFALEKFAGDLLPVVDS 82
Query: 137 LSLANE-SVPKEEVKDSNPHLKSLYEG----LLMTDGNLKKH 173
L E S +E +K + EG L M LK++
Sbjct: 83 LERGLELSSADDE------AIKPMREGVELTLKMFQDTLKRY 118
>gnl|CDD|172647 PRK14159, PRK14159, heat shock protein GrpE; Provisional.
Length = 176
Score = 44.7 bits (105), Expect = 7e-06
Identities = 31/95 (32%), Positives = 46/95 (48%), Gaps = 7/95 (7%)
Query: 46 SESKKDDSDSTASSSSTESTSNVDPKIKEELEDLKKQIEALNEKNSDLLDKYKRALADGE 105
SE K++ + A +S N+ E L+K + +L DKY RA A+ E
Sbjct: 2 SEQKQEFENENAENSEHLQDENLQNIEDVEQNKLQKDYD-------ELKDKYMRANAEFE 54
Query: 106 NARQRFNKQLEESKLYGIQSFCKDLLDIADTLSLA 140
N ++R K+ + Y +SF KDLLD+ D L A
Sbjct: 55 NIKKRMEKEKLSAMAYANESFAKDLLDVLDALEAA 89
>gnl|CDD|237626 PRK14154, PRK14154, heat shock protein GrpE; Provisional.
Length = 208
Score = 44.4 bits (104), Expect = 1e-05
Identities = 38/149 (25%), Positives = 69/149 (46%), Gaps = 9/149 (6%)
Query: 37 SKAENKKEESESKKDDSDSTASSSSTESTSNVDPKIKEELEDLKKQIEALNEKNSDLLDK 96
+KA+NK E+ +++ + S E + + E L+ Q+ + K + +
Sbjct: 15 TKAKNKWEKVMEAEEEQEEGGGDGSQEMEPHREGLEFPSREKLEGQLTRMERKVDEYKTQ 74
Query: 97 YKRALADGENARQRFNKQLEESKLYGIQSFCKDLLDIADTLSLANESVPKEEVKDSNPHL 156
Y RA A+ +N R+R ++ + +G + DLL +AD+L ES E+ P +
Sbjct: 75 YLRAQAEMDNLRKRIEREKADIIKFGSKQLITDLLPVADSLIHGLESPASED-----PQV 129
Query: 157 KSLYEGLLMT----DGNLKKHAHPVEYPS 181
KS+ +G+ +T L KH V P+
Sbjct: 130 KSMRDGMSLTLDLLHNTLAKHGVQVINPN 158
>gnl|CDD|237624 PRK14143, PRK14143, heat shock protein GrpE; Provisional.
Length = 238
Score = 42.8 bits (101), Expect = 4e-05
Identities = 22/96 (22%), Positives = 50/96 (52%)
Query: 40 ENKKEESESKKDDSDSTASSSSTESTSNVDPKIKEELEDLKKQIEALNEKNSDLLDKYKR 99
E + E + + D +++ +S S + S L L++++E+L ++ +L +Y R
Sbjct: 33 EQEAELTNPEGDAAEAESSPDSGSAASETAADNAARLAQLEQELESLKQELEELNSQYMR 92
Query: 100 ALADGENARQRFNKQLEESKLYGIQSFCKDLLDIAD 135
AD +N R+R +++ E+ +L + ++L + D
Sbjct: 93 IAADFDNFRKRTSREQEDLRLQLKCNTLSEILPVVD 128
>gnl|CDD|184538 PRK14149, PRK14149, heat shock protein GrpE; Provisional.
Length = 191
Score = 41.8 bits (98), Expect = 7e-05
Identities = 31/136 (22%), Positives = 52/136 (38%), Gaps = 24/136 (17%)
Query: 37 SKAENKKEESESKKDDSDSTASSSSTESTSNVDPKIKEELEDLKKQIEALNEKNSDLLDK 96
++E K + ++ + AS E IKE+ E K ++ +K
Sbjct: 17 PESEEKACACKEQQGEEKQEASEKEGE--------IKEDFE----------LKYKEMHEK 58
Query: 97 YKRALADGENARQRFNKQLEESKLYGIQSFCKDLLDIADTLSLANESVPKEEVKDSNPHL 156
Y R AD EN ++R + + Y + DLL + D L A +S
Sbjct: 59 YLRVHADFENVKKRLERDKSMALEYAYEKIALDLLPVIDALLGALKSA------AEVDKE 112
Query: 157 KSLYEGLLMTDGNLKK 172
+L +GL +T L +
Sbjct: 113 SALTKGLELTMEKLHE 128
>gnl|CDD|182379 PRK10325, PRK10325, heat shock protein GrpE; Provisional.
Length = 197
Score = 41.6 bits (97), Expect = 9e-05
Identities = 35/135 (25%), Positives = 64/135 (47%), Gaps = 15/135 (11%)
Query: 37 SKAENKKEESESKK----DDSDSTASSSSTESTSNVDPKIKEELEDLKKQI-EALNEKNS 91
S E K E ++ + D + + S VDP+ E++ +L+ Q+ EA +
Sbjct: 2 SSKEQKTPEGQAPEEIIMDQHEEIEAVEPEASAEQVDPR-DEKIANLEAQLAEAQTRERD 60
Query: 92 DLLDKYKRALADGENARQRFNKQLEESKLYGIQSFCKDLLDIADTLSLANESVPKEEVKD 151
+L R A+ EN R+R +E++ + ++ F +LL + D+L A E K
Sbjct: 61 GIL----RVKAEMENLRRRTELDIEKAHKFALEKFINELLPVIDSLDRALEVADKA---- 112
Query: 152 SNPHLKSLYEGLLMT 166
NP + ++ EG+ +T
Sbjct: 113 -NPDMSAMVEGIELT 126
>gnl|CDD|172637 PRK14148, PRK14148, heat shock protein GrpE; Provisional.
Length = 195
Score = 41.7 bits (97), Expect = 1e-04
Identities = 31/113 (27%), Positives = 55/113 (48%), Gaps = 6/113 (5%)
Query: 40 ENKKEESESKKDDSDSTASSSSTESTSNV--DPKIKEELEDLKKQIEALNEKNSDLLDKY 97
+ K + D + ++ ES S + ++E+LE K I+ L + D+
Sbjct: 4 QEKSNVEDKSLDIETAAQVETAQESASGALEELSVEEQLERAKDTIKELEDSCDQFKDEA 63
Query: 98 KRALADGENARQRFNKQLEESKLYGIQSFCKDLLDIADTLSLANESVPKEEVK 150
RA A+ EN R+R + + ++ +GI+ F K+LL + D++ E K EVK
Sbjct: 64 LRAKAEMENIRKRAERDVSNARKFGIEKFAKELLPVIDSI----EQALKHEVK 112
>gnl|CDD|172646 PRK14158, PRK14158, heat shock protein GrpE; Provisional.
Length = 194
Score = 40.7 bits (95), Expect = 2e-04
Identities = 35/135 (25%), Positives = 58/135 (42%), Gaps = 11/135 (8%)
Query: 40 ENKKEESESKKDDSDSTASSSSTESTSNVDPKIKEELEDLKKQIE-ALNEKNSDLL---D 95
+ KK S + + A+ + + + D K++E AL K ++ D
Sbjct: 2 DKKKHGSHQIAEALKAKAAKEAEAAQGKPEAAQPVAAADRIKELEEALAAKEAEAAANWD 61
Query: 96 KYKRALADGENARQRFNKQLEESKLYGIQSFCKDLLDIADTLSLANESVPKEEVKDSNPH 155
KY R AD EN R+R K+ EE YG +S ++L D + A + +E
Sbjct: 62 KYLRERADLENYRKRVQKEKEELLKYGNESLILEILPAVDNMERALDHADEES------- 114
Query: 156 LKSLYEGLLMTDGNL 170
+ ++ EG+ MT L
Sbjct: 115 MSAIIEGIRMTLSML 129
>gnl|CDD|184539 PRK14150, PRK14150, heat shock protein GrpE; Provisional.
Length = 193
Score = 40.7 bits (96), Expect = 2e-04
Identities = 36/127 (28%), Positives = 63/127 (49%), Gaps = 12/127 (9%)
Query: 40 ENKKEESESKKDDSDSTASSSSTESTSNVDPKIKEELEDLKKQIEALNEKNSDLLDKYKR 99
E EE E++ + + + + D +I ELE + +A E++S L R
Sbjct: 11 EQVSEEIEAEVEQQEEADEAELEDELDEADARI-AELEAQLAEAQA-EERDSVL-----R 63
Query: 100 ALADGENARQRFNKQLEESKLYGIQSFCKDLLDIADTLSLANESVPKEEVKDSNPHLKSL 159
A A+ EN R+R + +E++ + ++ F +LL + D L A ++ KE N LK+L
Sbjct: 64 ARAEVENIRRRAEQDVEKAHKFALEKFANELLPVIDNLERALQAADKE-----NEALKAL 118
Query: 160 YEGLLMT 166
EG+ +T
Sbjct: 119 IEGVELT 125
>gnl|CDD|184536 PRK14145, PRK14145, heat shock protein GrpE; Provisional.
Length = 196
Score = 35.7 bits (82), Expect = 0.008
Identities = 27/108 (25%), Positives = 48/108 (44%), Gaps = 4/108 (3%)
Query: 40 ENKKEESESKKDDSDSTASSSSTESTSNVDPKIKE----ELEDLKKQIEALNEKNSDLLD 95
E KEE + + S + E + ++ E+E+LK++++ + + LD
Sbjct: 7 EINKEEEKDVNNLSSNEQMEGPPEDEQAQQNQPQQQTVDEIEELKQKLQQKEVEAQEYLD 66
Query: 96 KYKRALADGENARQRFNKQLEESKLYGIQSFCKDLLDIADTLSLANES 143
+R A+ EN R+R K+ E YG + +LL + D A S
Sbjct: 67 IAQRLKAEFENYRKRTEKEKSEMVEYGKEQVILELLPVMDNFERALAS 114
>gnl|CDD|184535 PRK14144, PRK14144, heat shock protein GrpE; Provisional.
Length = 199
Score = 34.7 bits (79), Expect = 0.021
Identities = 34/129 (26%), Positives = 62/129 (48%), Gaps = 11/129 (8%)
Query: 38 KAENKKEESESKKDDSDSTASSSSTESTSNVDPKIKEELEDLKKQIEALNEKNSDLLDKY 97
K E+K+E + + T S + + P L++Q+ +K + +K
Sbjct: 13 KDEHKEEHKVENEILEEETDEESQHQEPALGHPSYTA----LEEQLTLAEQKAHENWEKS 68
Query: 98 KRALADGENARQRFNKQLEESKLYGIQSFCKDLLDIADTLSLANESVPKEEVKDSNPHLK 157
RALA+ EN R+R +++ + YG++ LL + D+L E + K+S+P
Sbjct: 69 VRALAELENVRRRMEREVANAHKYGVEKLISALLPVVDSL----EQALQLADKNSDP--- 121
Query: 158 SLYEGLLMT 166
S++EGL +T
Sbjct: 122 SMHEGLELT 130
>gnl|CDD|223020 PHA03246, PHA03246, large tegument protein UL36; Provisional.
Length = 3095
Score = 34.6 bits (79), Expect = 0.037
Identities = 24/98 (24%), Positives = 49/98 (50%), Gaps = 7/98 (7%)
Query: 15 IGELKSRIPQTLSAQSNVKFLWSKAENKKEESESKKDDSDSTASSSSTESTSNV-DPKIK 73
I ++KS P+T + ++ + S K E S + + D + ++ E+ +P I+
Sbjct: 1296 ITKIKSLDPKTYTYNTDASVIVSA---KAEVSAATQQAGDCKDALTALENEPLTYNPHIQ 1352
Query: 74 EELEDLKKQIEALNEKNSDL---LDKYKRALADGENAR 108
++ +L K IE++N++ +L L Y+R E +R
Sbjct: 1353 RKIAELNKLIESVNQRVGELDIALQTYERNRISAERSR 1390
>gnl|CDD|237625 PRK14147, PRK14147, heat shock protein GrpE; Provisional.
Length = 172
Score = 33.0 bits (75), Expect = 0.064
Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 8/80 (10%)
Query: 58 SSSSTESTSNVDPKIKEELEDLKKQIEALNEKNSDLLDKYKRALADGENARQRFNKQLEE 117
S ++ DP +K E+E L+ +I + +D L R AD EN R+R + +E+
Sbjct: 10 SEDLAQNPPETDP-LKAEVESLRSEIALVK---ADAL----RERADLENQRKRIARDVEQ 61
Query: 118 SKLYGIQSFCKDLLDIADTL 137
++ + + +LL + D+L
Sbjct: 62 ARKFANEKLLGELLPVFDSL 81
>gnl|CDD|241262 cd01228, PH_BCR-related, Breakpoint Cluster Region-related
pleckstrin homology (PH) domain. The BCR gene is one of
the two genes in the BCR-ABL complex, which is
associated with the Philadelphia chromosome, a product
of a reciprocal translocation between chromosomes 22 and
9. BCR is a GTPase-activating protein (GAP) for RAC1
(primarily) and CDC42. The Dbl region of BCR has the
most RhoGEF activity for Cdc42, and less activity
towards Rac and Rho. Since BCR possesses both GAP and
GEF activities, it may function to temporally regulate
the activity of these GTPases. It also displays
serine/threonine kinase activity. The BCR protein
contains multiple domains including an N-terminal kinase
domain, a RhoGEF domain, a PH domain, a C1 domain, a C2
domain, and a C-terminal RhoGAP domain. ABR, a related
smaller protein, is structurally similar to BCR, but
lacks the N-terminal kinase domain and has GAP activity
for both Rac and Cdc42. PH domains have diverse
functions, but in general are involved in targeting
proteins to the appropriate cellular location or in the
interaction with a binding partner. They share little
sequence conservation, but all have a common fold, which
is electrostatically polarized. Less than 10% of PH
domains bind phosphoinositide phosphates (PIPs) with
high affinity and specificity. PH domains are
distinguished from other PIP-binding domains by their
specific high-affinity binding to PIPs with two vicinal
phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or
PtdIns(3,4,5)P3 which results in targeting some PH
domain proteins to the plasma membrane. A few display
strong specificity in lipid binding. Any specificity is
usually determined by loop regions or insertions in the
N-terminus of the domain, which are not conserved across
all PH domains. PH domains are found in cellular
signaling proteins such as serine/threonine kinase,
tyrosine kinases, regulators of G-proteins, endocytotic
GTPases, adaptors, as well as cytoskeletal associated
molecules and in lipid associated enzymes.
Length = 179
Score = 32.7 bits (75), Expect = 0.073
Identities = 20/55 (36%), Positives = 30/55 (54%)
Query: 63 ESTSNVDPKIKEELEDLKKQIEALNEKNSDLLDKYKRALADGENARQRFNKQLEE 117
E+ +V PK EEL +KK I AL +K + K+A + G A ++ K+L E
Sbjct: 78 EAAPDVVPKSSEELVQMKKAISALKQKIKRDSAERKKAASSGSRAIEKLRKKLAE 132
>gnl|CDD|233467 TIGR01554, major_cap_HK97, phage major capsid protein, HK97 family.
This model family represents the major capsid protein
component of the heads (capsids) of bacteriophage HK97,
phi-105, P27, and related phage. This model represents
one of several analogous families lacking detectable
sequence similarity. The gene encoding this component is
typically located in an operon encoding the small and
large terminase subunits, the portal protein and the
prohead or maturation protease [Mobile and
extrachromosomal element functions, Prophage functions].
Length = 384
Score = 32.7 bits (75), Expect = 0.14
Identities = 13/71 (18%), Positives = 22/71 (30%), Gaps = 4/71 (5%)
Query: 38 KAENKKEESESKKDDSDSTASSSSTESTSNVDPKIKEELEDLKKQIEALNEKNSDLLDKY 97
+E +D E +KEE++ L +I+ L E +L K
Sbjct: 7 ALAELAKELRKLTEDEKLAE----AEEEKAEYDALKEEIDKLDAEIDRLEELLDELEAKP 62
Query: 98 KRALADGENAR 108
+ G
Sbjct: 63 AASGEGGGGEE 73
>gnl|CDD|223092 COG0013, AlaS, Alanyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 879
Score = 32.2 bits (74), Expect = 0.21
Identities = 21/87 (24%), Positives = 41/87 (47%), Gaps = 5/87 (5%)
Query: 74 EELEDLKKQIEALNEKNSDLLDKYKRALADGENARQRFNKQLEESKLYGIQSFCKDLLDI 133
+E EDL K+I +L + +LL K +R L + ++ ++L++ + DLL
Sbjct: 711 QEQEDLLKEIASLLKVPPELLPKVER-LLEELKELEKELERLKKKLA---AAELADLLSN 766
Query: 134 ADTLSLANESVPKEEVKDSNP-HLKSL 159
A + V +EV ++ L+ +
Sbjct: 767 AKAEEIGGVKVLAKEVDGADMKELREI 793
>gnl|CDD|237629 PRK14160, PRK14160, heat shock protein GrpE; Provisional.
Length = 211
Score = 31.3 bits (71), Expect = 0.30
Identities = 27/106 (25%), Positives = 50/106 (47%), Gaps = 5/106 (4%)
Query: 40 ENKKEESESKKD-DSDSTASSSSTESTSNVDPKIKEELEDLKKQIEALNEKNSDLLDKYK 98
ENK+E+ ++D + + E + + EEL+D +++ N+K + L+ K
Sbjct: 22 ENKEEDKGKEEDLEFEEIEKEEIIEDSEESNEVKIEELKDENNKLKEENKKLENELEALK 81
Query: 99 ----RALADGENARQRFNKQLEESKLYGIQSFCKDLLDIADTLSLA 140
R +A+ +N R+R K+ E + K+LL + D L A
Sbjct: 82 DRLLRTVAEYDNYRKRTAKEKEGIYSDACEDVLKELLPVLDNLERA 127
>gnl|CDD|236892 PRK11281, PRK11281, hypothetical protein; Provisional.
Length = 1113
Score = 31.8 bits (73), Expect = 0.35
Identities = 19/78 (24%), Positives = 30/78 (38%), Gaps = 13/78 (16%)
Query: 71 KIKEELEDLKKQIEALNEK---NSDLLDKYKRALADGENARQRFNK----QLEESKLYGI 123
+ KEE E LK+Q+ K L+ K + R+ + QL ES+L
Sbjct: 77 RQKEETEQLKQQLAQAPAKLRQAQAELEALKDDNDE--ETRETLSTLSLRQL-ESRLAQT 133
Query: 124 QSFCKDLLDIADTLSLAN 141
L + + L+ N
Sbjct: 134 LD---QLQNAQNDLAEYN 148
>gnl|CDD|234173 TIGR03346, chaperone_ClpB, ATP-dependent chaperone ClpB. Members
of this protein family are the bacterial ATP-dependent
chaperone ClpB. This protein belongs to the AAA family,
ATPases associated with various cellular activities
(pfam00004). This molecular chaperone does not act as a
protease, but rather serves to disaggregate misfolded
and aggregated proteins [Protein fate, Protein folding
and stabilization].
Length = 852
Score = 31.1 bits (71), Expect = 0.55
Identities = 16/48 (33%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 73 KEELEDLKKQIEALNEKNSDLLDKYKRALADGENARQRFNKQLEESKL 120
KE LEDL+K++ L E+ +DL +++K A + +Q +++E+ +L
Sbjct: 433 KERLEDLEKELAELEEEYADLEEQWKAEKAAIQGIQQ-IKEEIEQVRL 479
>gnl|CDD|237628 PRK14156, PRK14156, heat shock protein GrpE; Provisional.
Length = 177
Score = 29.8 bits (67), Expect = 0.67
Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
Query: 62 TESTSNVDPKIKEELEDLKKQIEALNEKNSDLLDKYKRALADGENARQRFNKQLEESKLY 121
TE+ V+ ++E E K ++E NE+ + +KY RA A+ +N ++R N++ ++ + Y
Sbjct: 17 TETEETVEEVVEETPE--KSELELANERADEFENKYLRAHAEMQNIQRRANEERQQLQRY 74
Query: 122 GIQSFCKDLLDIADTLSLA 140
Q K +L D L A
Sbjct: 75 RSQDLAKAILPSLDNLERA 93
>gnl|CDD|213662 TIGR01898, cas_TM1791_cmr6, CRISPR type III-B/RAMP module RAMP
protein Cmr6. CRISPR is a term for Clustered Regularly
Interspaced Short Palidromic Repeats. A number of
protein families appear only in association with these
repeats and are designated Cas (CRISPR associated)
proteins. This family, represented by TM1791 of
Thermotoga maritima, is designated Cmr6 [sic], for
CRISPR/Cas Ramp Module protein 6. This family is both
closely related to and frequently encoded next to the
TM1792 family of Cas proteins described by TIGR01867.
The two proteins are fused in an example from
Methanopyrus kandleri [Mobile and extrachromosomal
element functions, Other].
Length = 176
Score = 30.1 bits (68), Expect = 0.70
Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Query: 101 LADGENARQRFNKQLEESKLYGIQSFCKDLLDIADTLSLANESVPKEEVKDSNPHLKSLY 160
LAD + + ++ KL+G Q + L D + +E E+ NPH + Y
Sbjct: 51 LADEDKLSKGKVREELADKLFGTQER-EGELIFLDAYPIPDEDKSIFELDIINPHYQPYY 109
Query: 161 EGL 163
+G
Sbjct: 110 QGE 112
>gnl|CDD|172635 PRK14146, PRK14146, heat shock protein GrpE; Provisional.
Length = 215
Score = 29.7 bits (66), Expect = 0.89
Identities = 29/119 (24%), Positives = 55/119 (46%), Gaps = 5/119 (4%)
Query: 37 SKAENKKEES----ESKKDDSDSTASSSSTESTSNVDPKIKEELEDLKKQIEALNEKNSD 92
+KA KK +S ESK ++ +S S + TE T + E L+K+++ ++
Sbjct: 13 AKANEKKSQSQTLEESKLENMNSEESQTITEETQEQAVEGAETETSLQKELDNAKKEIES 72
Query: 93 LLDKYKRALADGENARQRFNKQLEESKLYGIQSFCKDLLDIADTLS-LANESVPKEEVK 150
L D + R A+ +N ++R ++ + ++S L+ D L + EE+K
Sbjct: 73 LKDSWARERAEFQNFKRRSAQEFVSIRKEAVKSLVSGFLNPIDNLERVGATQNQSEELK 131
>gnl|CDD|222998 PHA03140, PHA03140, helicase-primase primase subunit; Provisional.
Length = 772
Score = 29.9 bits (67), Expect = 1.1
Identities = 13/51 (25%), Positives = 28/51 (54%), Gaps = 9/51 (17%)
Query: 154 PHLKSLYEGLLMTDGNLKKHAHPVEYPSVVIIPDSIAV-MERISLEQSLSI 203
P L + + GL +H HP Y +++ + ++I+ +ER + E++ +I
Sbjct: 460 PALVTFFGGL--------RHIHPPAYKAIIALANAISACVERAANERNFAI 502
>gnl|CDD|217817 pfam03961, DUF342, Protein of unknown function (DUF342). This
family of bacterial proteins has no known function. The
proteins are in the region of 500-600 amino acid
residues in length.
Length = 450
Score = 29.9 bits (68), Expect = 1.2
Identities = 14/50 (28%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 71 KIKEELEDLKKQIEALNEKNSDLLDKYKRALADGE-NARQRFNKQLEESK 119
+++EELE +KK ++ L +K L KR + +++ +++LEE +
Sbjct: 345 ELEEELEKIKKLLKKLPKKARGQLPPEKREQLEKLLETKEKLSEELEELE 394
Score = 28.0 bits (63), Expect = 4.2
Identities = 15/51 (29%), Positives = 30/51 (58%), Gaps = 7/51 (13%)
Query: 70 PKIKEELEDLKKQIEALNEKNSDLLDKYKRALADGENARQRFNKQLEESKL 120
P++KEEL++L+++++ L E+ L+K K+ L + ++ QL K
Sbjct: 330 PELKEELKELEEELKELEEE----LEKIKKLL---KKLPKKARGQLPPEKR 373
>gnl|CDD|218661 pfam05622, HOOK, HOOK protein. This family consists of several
HOOK1, 2 and 3 proteins from different eukaryotic
organisms. The different members of the human gene
family are HOOK1, HOOK2 and HOOK3. Different domains
have been identified in the three human HOOK proteins,
and it was demonstrated that the highly conserved
NH2-domain mediates attachment to microtubules, whereas
the central coiled-coil motif mediates homodimerisation
and the more divergent C-terminal domains are involved
in binding to specific organelles (organelle-binding
domains). It has been demonstrated that endogenous HOOK3
binds to Golgi membranes, whereas both HOOK1 and HOOK2
are localised to discrete but unidentified cellular
structures. In mice the Hook1 gene is predominantly
expressed in the testis. Hook1 function is necessary for
the correct positioning of microtubular structures
within the haploid germ cell. Disruption of Hook1
function in mice causes abnormal sperm head shape and
fragile attachment of the flagellum to the sperm head.
Length = 713
Score = 29.4 bits (66), Expect = 1.6
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Query: 44 EESESKKDDSDSTASSSST----ESTSNVDPKIKEELEDLKKQIEALNEKNSDLL 94
ES++ KD+ D SS E+ K E+L DL++Q++ L E+N+ +
Sbjct: 291 AESQALKDEIDVLRESSDKAKKLEAQVETYKKKLEDLNDLRRQVKLLEERNAMYM 345
>gnl|CDD|165563 PHA03308, PHA03308, transcriptional regulator ICP4; Provisional.
Length = 1463
Score = 29.4 bits (65), Expect = 1.8
Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 13/89 (14%)
Query: 45 ESESKKDDSDSTASSSSTESTSNVDPKIKEELEDLKKQIEALNEKNSDLLDKYKRALADG 104
ES S S S++SSS + S+S+ D EE D K NEK + +RA
Sbjct: 1246 ESSSTMHSSSSSSSSSCSSSSSSSDSSSSEEDGDEK------NEK-----EDRERAGGGK 1294
Query: 105 ENARQRF--NKQLEESKLYGIQSFCKDLL 131
RQR ++ + Y +++ C D++
Sbjct: 1295 RRGRQRLPIRDRVYRGRDYRVRTPCADIV 1323
>gnl|CDD|224264 COG1345, FliD, Flagellar capping protein [Cell motility and
secretion].
Length = 483
Score = 29.3 bits (66), Expect = 1.8
Identities = 8/46 (17%), Positives = 23/46 (50%)
Query: 71 KIKEELEDLKKQIEALNEKNSDLLDKYKRALADGENARQRFNKQLE 116
+ ++++ L K I++L+++ ++YK ++ + N Q
Sbjct: 426 SLNKQIKSLDKDIKSLDKRLEAAEERYKTQFNTLDDMMTQMNSQSS 471
>gnl|CDD|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated.
Length = 646
Score = 29.1 bits (66), Expect = 2.2
Identities = 13/27 (48%), Positives = 21/27 (77%)
Query: 71 KIKEELEDLKKQIEALNEKNSDLLDKY 97
+IKEELE+++K+ E+L E+ +L KY
Sbjct: 219 EIKEELEEIEKERESLLEELKELAKKY 245
>gnl|CDD|187792 cd09661, Cmr6_III-B, CRISPR/Cas system-associated RAMP superfamily
protein Cmr6. CRISPR (Clustered Regularly Interspaced
Short Palindromic Repeats) and associated Cas proteins
comprise a system for heritable host defense by
prokaryotic cells against phage and other foreign DNA;
RAMP superfamily protein; This protein is a subunit of
Cmr complex.
Length = 210
Score = 28.5 bits (64), Expect = 2.4
Identities = 15/65 (23%), Positives = 27/65 (41%), Gaps = 4/65 (6%)
Query: 99 RALADGENARQRFNKQLEESKLYGIQSFCKDLLDIADTLSLANESVPKEEVKDSNPHLKS 158
R + ++ Q+ SKL+G Q + L D + +E+ E+ NPH +
Sbjct: 85 REDYEEKDTVQKE---ELASKLFGSQEK-EGELIFLDAYPIPDENKSIFELDIINPHYQP 140
Query: 159 LYEGL 163
Y+
Sbjct: 141 YYQEE 145
>gnl|CDD|203138 pfam04977, DivIC, Septum formation initiator. DivIC from B.
subtilis is necessary for both vegetative and
sporulation septum formation. These proteins are mainly
composed of an amino terminal coiled-coil.
Length = 80
Score = 27.2 bits (61), Expect = 2.5
Identities = 9/47 (19%), Positives = 20/47 (42%), Gaps = 6/47 (12%)
Query: 71 KIKEELEDLKKQIEALNEKNSDLLDKYKRALADGEN-----ARQRFN 112
++ +E+ L+ ++ L +N +L + K L + AR
Sbjct: 21 QLNQEIAALQAELAKLKAENEELEAEVKD-LKSDPDYIEERARSELG 66
>gnl|CDD|182611 PRK10642, PRK10642, proline/glycine betaine transporter;
Provisional.
Length = 490
Score = 28.5 bits (64), Expect = 2.7
Identities = 7/28 (25%), Positives = 19/28 (67%)
Query: 72 IKEELEDLKKQIEALNEKNSDLLDKYKR 99
I+++++D+ ++I L K + L+ ++ R
Sbjct: 461 IEQKIDDIDQEIAELQAKRTRLVQQHPR 488
>gnl|CDD|216255 pfam01031, Dynamin_M, Dynamin central region. This region lies
between the GTPase domain, see pfam00350, and the
pleckstrin homology (PH) domain, see pfam00169.
Length = 296
Score = 28.3 bits (64), Expect = 2.9
Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 7/64 (10%)
Query: 72 IKEELEDLKKQIEALNEKNSDLLDKYKRALADGENARQRFNKQLEESKLYGIQSFCKDLL 131
I++ L DLK QI ++ L++Y + + F L I +F +D
Sbjct: 74 IRKSLPDLKSQINKKLQETEKELERYGDDPPEDPAEKGAFLLDL-------ITAFNQDFK 126
Query: 132 DIAD 135
++ D
Sbjct: 127 NLID 130
>gnl|CDD|223231 COG0153, GalK, Galactokinase [Carbohydrate transport and
metabolism].
Length = 390
Score = 28.4 bits (64), Expect = 3.2
Identities = 7/45 (15%), Positives = 16/45 (35%)
Query: 74 EELEDLKKQIEALNEKNSDLLDKYKRALADGENARQRFNKQLEES 118
E E L I++L + + + + +R + E+
Sbjct: 236 EAAEFLGVSIKSLRDVTDEEFAALQAEIEVDPKIARRARHVVTEN 280
>gnl|CDD|223436 COG0359, RplI, Ribosomal protein L9 [Translation, ribosomal
structure and biogenesis].
Length = 148
Score = 27.6 bits (62), Expect = 3.3
Identities = 19/90 (21%), Positives = 35/90 (38%), Gaps = 7/90 (7%)
Query: 70 PKIKEELEDLKKQIEALNEKNSDLLDKYKRALADGENARQRFNKQLEESKLYGIQSFCKD 129
+ LE + ++E + + K L K E+ KL+G +
Sbjct: 41 KGNLKLLEARRAKLEKKAAEELAEAEALKEKLEGKTVEIAV--KAGEDGKLFGSVT---- 94
Query: 130 LLDIADTLSLANESVPKEEVKDSNPHLKSL 159
DIA+ L A + K +++ N +K+L
Sbjct: 95 SKDIAEALKAAGFKLDKRKIRLPNG-IKTL 123
>gnl|CDD|177326 PHA01817, PHA01817, hypothetical protein.
Length = 479
Score = 28.5 bits (63), Expect = 3.3
Identities = 23/102 (22%), Positives = 44/102 (43%)
Query: 53 SDSTASSSSTESTSNVDPKIKEELEDLKKQIEALNEKNSDLLDKYKRALADGENARQRFN 112
SDS+ S SS +S S++ K+ +++L K+++ + + + K D ++ FN
Sbjct: 200 SDSSDSGSSGDSGSSLLALAKQAMQELLKKVQDALQWDVHSIGSDKFFSNDYFTLQKTFN 259
Query: 113 KQLEESKLYGIQSFCKDLLDIADTLSLANESVPKEEVKDSNP 154
G+ K L+D S + S P ++ D
Sbjct: 260 NTYHIKMTIGLLDSLKKLIDSVQVDSGGSSSNPTDDDGDHKA 301
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC,
primarily archaeal type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. It is found
in a single copy and is homodimeric in prokaryotes, but
six paralogs (excluded from this family) are found in
eukarotes, where SMC proteins are heterodimeric. This
family represents the SMC protein of archaea and a few
bacteria (Aquifex, Synechocystis, etc); the SMC of other
bacteria is described by TIGR02168. The N- and
C-terminal domains of this protein are well conserved,
but the central hinge region is skewed in composition
and highly divergent [Cellular processes, Cell division,
DNA metabolism, Chromosome-associated proteins].
Length = 1164
Score = 28.5 bits (64), Expect = 3.4
Identities = 15/113 (13%), Positives = 44/113 (38%), Gaps = 9/113 (7%)
Query: 2 EFLKRLSARQQHFIGELKSRIPQTLSAQSNVKFLWSKAENKKEESESKKDDSDSTASSSS 61
E + R+ AR + +L + + ++ L + ++ + + + + + +
Sbjct: 805 EEVSRIEARLREIEQKLNRLTLEKEYLEKEIQEL----QEQRIDLKEQIKSIEKEIENLN 860
Query: 62 TESTSNVDPKIKEELEDLKKQIEALNEKNSDLLDKYKRALADGENARQRFNKQ 114
+ +++EELE+L+ + L + DL + A ++ +
Sbjct: 861 GKKE-----ELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEEL 908
Score = 28.5 bits (64), Expect = 3.8
Identities = 19/111 (17%), Positives = 39/111 (35%), Gaps = 5/111 (4%)
Query: 4 LKRLSARQQHF---IGELKSRIPQTLSAQSNVKFLWSKAENKKEESESKKDDSDSTASSS 60
L+ R I +L + I + + K + E + + +D +
Sbjct: 317 LEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEV 376
Query: 61 STESTSNVDP--KIKEELEDLKKQIEALNEKNSDLLDKYKRALADGENARQ 109
E D +E+LE LK++I L + L ++ +R + +
Sbjct: 377 DKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNA 427
>gnl|CDD|216289 pfam01080, Presenilin, Presenilin. Mutations in presenilin-1 are a
major cause of early onset Alzheimer's disease. It has
been found that presenilin-1 binds to beta-catenin
in-vivo. This family also contains SPE proteins from
C.elegans.
Length = 403
Score = 28.3 bits (63), Expect = 3.4
Identities = 9/51 (17%), Positives = 20/51 (39%)
Query: 42 KKEESESKKDDSDSTASSSSTESTSNVDPKIKEELEDLKKQIEALNEKNSD 92
+K + DD ++ + S +S + E +++ NEK +
Sbjct: 270 EKSSTPELSDDESDSSETESQSDSSLAPEEDAAEQPEVQSNSLPSNEKREE 320
>gnl|CDD|234232 TIGR03499, FlhF, flagellar biosynthetic protein FlhF. [Cellular
processes, Chemotaxis and motility].
Length = 283
Score = 28.1 bits (63), Expect = 3.8
Identities = 9/52 (17%), Positives = 21/52 (40%)
Query: 37 SKAENKKEESESKKDDSDSTASSSSTESTSNVDPKIKEELEDLKKQIEALNE 88
+K E E + A ++ + ++++EL L++ +E L
Sbjct: 75 AKLPATAEPLELPAPLEEPAAPAAQAAEPLLPEAELRKELSALRELLERLLA 126
>gnl|CDD|233980 TIGR02712, urea_carbox, urea carboxylase. Members of this family
are ATP-dependent urea carboxylase, including
characterized members from Oleomonas sagaranensis (alpha
class Proteobacterium) and yeasts such as Saccharomyces
cerevisiae. The allophanate hydrolase domain of the
yeast enzyme is not included in this model and is
represented by an adjacent gene in Oleomonas
sagaranensis. The fusion of urea carboxylase and
allophanate hydrolase is designated urea amidolyase. The
enzyme from Oleomonas sagaranensis was shown to be
highly active on acetamide and formamide as well as urea
[Central intermediary metabolism, Nitrogen metabolism].
Length = 1201
Score = 28.5 bits (64), Expect = 3.9
Identities = 8/22 (36%), Positives = 16/22 (72%)
Query: 102 ADGENARQRFNKQLEESKLYGI 123
+D E+A + ++ L E+++YGI
Sbjct: 393 SDREDAILKLHQALAETRVYGI 414
>gnl|CDD|197874 smart00787, Spc7, Spc7 kinetochore protein. This domain is found
in cell division proteins which are required for
kinetochore-spindle association.
Length = 312
Score = 28.1 bits (63), Expect = 4.2
Identities = 14/46 (30%), Positives = 22/46 (47%)
Query: 72 IKEELEDLKKQIEALNEKNSDLLDKYKRALADGENARQRFNKQLEE 117
++EEL LK+ + L + + LD+ K L K+LEE
Sbjct: 184 LEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEE 229
>gnl|CDD|191716 pfam07263, DMP1, Dentin matrix protein 1 (DMP1). This family
consists of several mammalian dentin matrix protein 1
(DMP1) sequences. The dentin matrix acidic
phosphoprotein 1 (DMP1) gene has been mapped to human
chromosome 4q21. DMP1 is a bone and teeth specific
protein initially identified from mineralised dentin.
DMP1 is primarily localised in the nuclear compartment
of undifferentiated osteoblasts. In the nucleus, DMP1
acts as a transcriptional component for activation of
osteoblast-specific genes like osteocalcin. During the
early phase of osteoblast maturation, Ca(2+) surges into
the nucleus from the cytoplasm, triggering the
phosphorylation of DMP1 by a nuclear isoform of casein
kinase II. This phosphorylated DMP1 is then exported out
into the extracellular matrix, where it regulates
nucleation of hydroxyapatite. DMP1 is a unique molecule
that initiates osteoblast differentiation by
transcription in the nucleus and orchestrates
mineralised matrix formation extracellularly, at later
stages of osteoblast maturation. The DMP1 gene has been
found to be ectopically expressed in lung cancer
although the reason for this is unknown.
Length = 514
Score = 28.1 bits (62), Expect = 4.4
Identities = 20/84 (23%), Positives = 35/84 (41%)
Query: 6 RLSARQQHFIGELKSRIPQTLSAQSNVKFLWSKAENKKEESESKKDDSDSTASSSSTEST 65
S + S + L + S S+ +++S S++DDSDS SS S E +
Sbjct: 408 SSSEESPESTEDENSSSQEGLQSHSASTESRSQESQSEQDSRSEEDDSDSQDSSRSKEDS 467
Query: 66 SNVDPKIKEELEDLKKQIEALNEK 89
++ + E + K E + K
Sbjct: 468 NSTESASSSEEDGQPKNTEIESRK 491
>gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584). This
protein is found in bacteria and eukaryotes. Proteins in
this family are typically between 943 to 1234 amino
acids in length. This family contains a P-loop motif
suggesting it is a nucleotide binding protein. It may be
involved in replication.
Length = 1198
Score = 28.1 bits (63), Expect = 4.7
Identities = 21/112 (18%), Positives = 38/112 (33%), Gaps = 9/112 (8%)
Query: 63 ESTSNVDPKIKEELEDLKKQIEALNEKNSDLLDKYKRALADGENARQRFNKQLEESKLYG 122
+S P + +L +L+ E L ++ + L+ K E R+ KQL++ L
Sbjct: 812 DSLREERPNLAIQLRELESSAEELQQELTRLIKDTKLRRKKLEQERKALEKQLDQ--LDE 869
Query: 123 IQSFCKDLLDIADTLSLANESVPK--EEVKDSNPHLKSLYEGLLMTDGNLKK 172
+ +D + LA P + + S E L
Sbjct: 870 LLRGLRDEMR-----QLAELKEPANANQAEGSISERLDQLEEFKRKRKRLSG 916
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common
bacterial type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. This family
represents the SMC protein of most bacteria. The smc
gene is often associated with scpB (TIGR00281) and scpA
genes, where scp stands for segregation and condensation
protein. SMC was shown (in Caulobacter crescentus) to be
induced early in S phase but present and bound to DNA
throughout the cell cycle [Cellular processes, Cell
division, DNA metabolism, Chromosome-associated
proteins].
Length = 1179
Score = 28.1 bits (63), Expect = 4.9
Identities = 10/46 (21%), Positives = 23/46 (50%)
Query: 72 IKEELEDLKKQIEALNEKNSDLLDKYKRALADGENARQRFNKQLEE 117
+ E+ L++Q + L E+ ++L + + A E + ++ EE
Sbjct: 293 LANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEE 338
Score = 27.7 bits (62), Expect = 5.7
Identities = 18/108 (16%), Positives = 41/108 (37%), Gaps = 2/108 (1%)
Query: 12 QHFIGELKSRIPQTLSAQSNVKFLWSKAENKKEESESKKDDSDSTASSSSTESTSNVDPK 71
+ + EL+ I + + S+ E +K+ + + + +
Sbjct: 273 RLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKL 332
Query: 72 I--KEELEDLKKQIEALNEKNSDLLDKYKRALADGENARQRFNKQLEE 117
EEL +L++++E L E+ L + + A+ E R + E+
Sbjct: 333 DELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQ 380
>gnl|CDD|178238 PLN02631, PLN02631, ferric-chelate reductase.
Length = 699
Score = 28.1 bits (62), Expect = 4.9
Identities = 11/21 (52%), Positives = 16/21 (76%)
Query: 30 SNVKFLWSKAENKKEESESKK 50
S++ FLW K +NK+ + ESKK
Sbjct: 584 SSIVFLWRKKQNKEGDKESKK 604
>gnl|CDD|193106 pfam12628, Inhibitor_I71, Falstatin, cysteine peptidase inhibitor.
This family of peptidase inhibitors is expressed from
plasmodial protozoal species. Falstatin is found to be a
potent reversible inhibitor of the P. falciparum
cysteine proteases falcipain-2 and falcipain-3, as well
as other parasite- and non-parasite-derived cysteine
proteases, but is only a relatively weak inhibitor of
the P. falciparum cysteine proteases falcipain-1 and
dipeptidyl aminopeptidase 1. Thus, P. falciparum
requires expression of falstatin to limit proteolysis by
certain host or parasite cysteine proteases during
erythrocyte invasion.
Length = 173
Score = 27.2 bits (60), Expect = 5.0
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 42 KKEESESKKDDSDSTASSSSTESTSNVDPKIKEEL 76
K E++S K+ ++ SSS E+ SN PK + +L
Sbjct: 94 KINENDSSKNVINNNQSSSQNETDSNKPPKPRMQL 128
>gnl|CDD|234501 TIGR04211, SH3_and_anchor, SH3 domain protein. Members of this
protein family have a signal peptide, a strongly
conserved SH3 domain, a variable region, and then a
C-terminal hydrophobic transmembrane alpha helix region.
Length = 198
Score = 27.3 bits (61), Expect = 5.2
Identities = 14/90 (15%), Positives = 36/90 (40%), Gaps = 13/90 (14%)
Query: 4 LKRLSARQQHFIGELKSRIPQTLSAQSNVKFLWSKAENKKEESESKKDDSDSTASSSSTE 63
L L + EL+ ++ + +K S E + E + + ++++
Sbjct: 75 LAELQEE----LAELQEQLAELQQENQELKQELSTLEAELERLQKELARIKQLSANAI-- 128
Query: 64 STSNVDPKIKEELEDLKKQIEALNEKNSDL 93
++ EE +L++++ L ++N L
Sbjct: 129 -------ELDEENRELREELAELKQENEAL 151
>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional.
Length = 880
Score = 27.7 bits (62), Expect = 5.6
Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Query: 39 AENKKEESESKKDDSDSTASSSSTESTSNVDPKIKEELEDLKKQIEALNEKNSDLLDKYK 98
E ++E + + D + + TE ++ EE+ DL++++E L E+ DLL +
Sbjct: 247 EERREELETLEAEIEDLRETIAETERERE---ELAEEVRDLRERLEELEEERDDLLAEAG 303
Query: 99 RALADGENARQR 110
AD E R
Sbjct: 304 LDDADAEAVEAR 315
>gnl|CDD|202504 pfam02996, Prefoldin, Prefoldin subunit. This family comprises of
several prefoldin subunits. The biogenesis of the
cytoskeletal proteins actin and tubulin involves
interaction of nascent chains of each of the two
proteins with the oligomeric protein prefoldin (PFD) and
their subsequent transfer to the cytosolic chaperonin
CCT (chaperonin containing TCP-1). Electron microscopy
shows that eukaryotic PFD, which has a similar structure
to its archaeal counterpart, interacts with unfolded
actin along the tips of its projecting arms. In its
PFD-bound state, actin seems to acquire a conformation
similar to that adopted when it is bound to CCT.
Length = 120
Score = 26.8 bits (60), Expect = 5.7
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 72 IKEELEDLKKQIEALNEKNSDLLDKYKRALA 102
+K+ +E+L+KQ+E L E+ L D+ A
Sbjct: 82 LKKRIEELEKQLEKLEEELEKLKDQITTLEA 112
>gnl|CDD|235871 PRK06835, PRK06835, DNA replication protein DnaC; Validated.
Length = 329
Score = 27.6 bits (62), Expect = 6.0
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 69 DPKIKEELEDLKKQIEALNEKNSDLL 94
K +E L++LK++I L K ++LL
Sbjct: 60 PDKKEETLKELKEKITDLRVKKAELL 85
>gnl|CDD|227441 COG5110, RPN1, 26S proteasome regulatory complex component
[Posttranslational modification, protein turnover,
chaperones].
Length = 881
Score = 27.6 bits (61), Expect = 6.5
Identities = 17/72 (23%), Positives = 30/72 (41%), Gaps = 11/72 (15%)
Query: 43 KEESESKKDDSDSTASSSSTESTSNVDPKIKEELEDLKKQ-----------IEALNEKNS 91
+ES+ K+ D + S + T N K KEE E L ++ +E + + +
Sbjct: 2 VDESDKKQQTIDEQSQISPEKQTPNKKDKKKEEEEQLSEEDAMLKGDLELLVERIQDPDI 61
Query: 92 DLLDKYKRALAD 103
DL + L +
Sbjct: 62 DLQNNSLNMLKE 73
>gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A
(vWA) domain [General function prediction only].
Length = 4600
Score = 27.7 bits (61), Expect = 6.5
Identities = 17/75 (22%), Positives = 39/75 (52%)
Query: 44 EESESKKDDSDSTASSSSTESTSNVDPKIKEELEDLKKQIEALNEKNSDLLDKYKRALAD 103
+ESE+++ +SD + + + N + +EE +DL +++ + E S+ L++ +
Sbjct: 3853 DESEARELESDMNGVTKDSVVSENENSDSEEENQDLDEEVNDIPEDLSNSLNEKLWDEPN 3912
Query: 104 GENARQRFNKQLEES 118
E+ + K E+S
Sbjct: 3913 EEDLLETEQKSNEQS 3927
>gnl|CDD|215969 pfam00521, DNA_topoisoIV, DNA gyrase/topoisomerase IV, subunit A.
Length = 427
Score = 27.5 bits (62), Expect = 6.5
Identities = 8/31 (25%), Positives = 19/31 (61%)
Query: 71 KIKEELEDLKKQIEALNEKNSDLLDKYKRAL 101
K+++E+E+L+K+I L + + + + L
Sbjct: 396 KLEKEIEELEKEIAELEKILASEKKLWIKEL 426
>gnl|CDD|234141 TIGR03185, DNA_S_dndD, DNA sulfur modification protein DndD. This
model describes the DndB protein encoded by an operon
associated with a sulfur-containing modification to DNA.
The operon is sporadically distributed in bacteria, much
like some restriction enzyme operons. DndD is described
as a putative ATPase. The small number of examples known
so far include species from among the Firmicutes,
Actinomycetes, Proteobacteria, and Cyanobacteria [DNA
metabolism, Restriction/modification].
Length = 650
Score = 27.7 bits (62), Expect = 6.6
Identities = 15/76 (19%), Positives = 30/76 (39%), Gaps = 1/76 (1%)
Query: 42 KKEESESKKDDSDSTASSSSTESTSNVDPKIKEELEDLKKQIEALNEKNSDLLDKYKRAL 101
KK E S + E + + + +E+ L+ ++E L K++
Sbjct: 199 KKSELPSSILSEIEALEAELKEQSEKYE-DLAQEIAHLRNELEEAQRSLESLEKKFRSEG 257
Query: 102 ADGENARQRFNKQLEE 117
D R++ +QL+E
Sbjct: 258 GDLFEEREQLERQLKE 273
>gnl|CDD|234701 PRK00252, alaS, alanyl-tRNA synthetase; Reviewed.
Length = 865
Score = 27.7 bits (63), Expect = 6.7
Identities = 14/58 (24%), Positives = 28/58 (48%), Gaps = 9/58 (15%)
Query: 32 VKFLWSKAENKKEESESKKDDSDSTASSSSTESTSNVDPKIKEELEDLKKQIEALNEK 89
+++L + KE + K + +E V+ + EEL++L+K++E L K
Sbjct: 693 LEYLNEQEALLKELAALLK--------AKPSELPERVE-ALLEELKELEKELEQLKAK 741
>gnl|CDD|220684 pfam10310, DUF2413, Protein of unknown function (DUF2413). This is
a family of proteins conserved in fungi. The function is
not known.
Length = 436
Score = 27.4 bits (61), Expect = 7.2
Identities = 14/69 (20%), Positives = 23/69 (33%)
Query: 17 ELKSRIPQTLSAQSNVKFLWSKAENKKEESESKKDDSDSTASSSSTESTSNVDPKIKEEL 76
E + A K +K ES + + S EST + PK K
Sbjct: 45 EKAKPPKKPKEASRPGTPRNPKKSSKPTESSAASSEEKPAKPRKSAESTRSSHPKSKAPS 104
Query: 77 EDLKKQIEA 85
+ +++ E
Sbjct: 105 TESEEEEEP 113
>gnl|CDD|193205 pfam12729, 4HB_MCP_1, Four helix bundle sensory module for signal
transduction. This family is a four helix bundle that
operates as a ubiquitous sensory module in prokaryotic
signal-transduction. The 4HB_MCP is always found between
two predicted transmembrane helices indicating that it
detects only extracellular signals. In many cases the
domain is associated with a cytoplasmic HAMP domain
suggesting that most proteins carrying the bundle might
share the mechanism of transmembrane signalling which is
well-characterized in E coli chemoreceptors.
Length = 181
Score = 26.8 bits (60), Expect = 7.4
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 73 KEELEDLKKQIEALNEKNSDLLDKYKRALADGENARQRFNKQLEESKLY 121
E ++L K IE L + LL KY++ E ++ FN+ E+ K Y
Sbjct: 74 PAERDELLKDIEELRAEIDKLLKKYEK-TILTEEEKKLFNEFKEQLKAY 121
>gnl|CDD|220664 pfam10267, Tmemb_cc2, Predicted transmembrane and coiled-coil 2
protein. This family of transmembrane coiled-coil
containing proteins is conserved from worms to humans.
Its function is unknown.
Length = 387
Score = 27.1 bits (60), Expect = 7.8
Identities = 19/72 (26%), Positives = 30/72 (41%), Gaps = 17/72 (23%)
Query: 45 ESESKKDDSD--STASSSSTESTSNVDP---------------KIKEELEDLKKQIEALN 87
+ DDS S+A+SSS + SN K+ EEL ++K+ L
Sbjct: 166 SPKYGSDDSSECSSATSSSAGANSNSGSGPGSAVAQQQSLNLDKLLEELREIKEGQSRLE 225
Query: 88 EKNSDLLDKYKR 99
E L ++ +R
Sbjct: 226 ESYERLKEQLQR 237
>gnl|CDD|202833 pfam03962, Mnd1, Mnd1 family. This family of proteins includes
MND1 from S. cerevisiae. The mnd1 protein forms a
complex with hop2 to promote homologous chromosome
pairing and meiotic double-strand break repair.
Length = 188
Score = 26.8 bits (60), Expect = 7.9
Identities = 10/60 (16%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
Query: 71 KIKEELEDLKKQIEALNEKNSDLLDKYKRALADGENARQRFNKQLEESKLYGIQSFCKDL 130
++++EL+ LK ++E + + + ++K K + A R+ ++ ++S+
Sbjct: 114 QLEKELKKLKAELEKYEKNDPERIEKLKEETKVAKEAANRWTDN-----IFSLKSYLSKK 168
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and
chromosome partitioning].
Length = 1163
Score = 27.4 bits (61), Expect = 7.9
Identities = 23/108 (21%), Positives = 44/108 (40%), Gaps = 5/108 (4%)
Query: 15 IGELKSRIPQTLSAQSNVKFLWSKAENKKEESESKKDDSDSTASSSST--ESTSNVDPKI 72
I ELKS + + ++ + + + EE E + E ++
Sbjct: 269 IEELKSELEELREELEELQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEEL 328
Query: 73 KEELEDLKKQIEALN---EKNSDLLDKYKRALADGENARQRFNKQLEE 117
KE++E LK+++E E+ LL + + A + E ++LEE
Sbjct: 329 KEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEE 376
Score = 27.0 bits (60), Expect = 9.3
Identities = 26/119 (21%), Positives = 55/119 (46%), Gaps = 6/119 (5%)
Query: 1 MEFLKRLSARQQHFIGELKSRIPQTLSAQSNVKFLWSKAENKKEESESKKDDSDSTASS- 59
+E LKR A + + +L+SR+ + ++ + + + EE E + + + +
Sbjct: 718 LEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKL 777
Query: 60 -SSTESTSNVDPKIKEELEDLKKQIEALNEKNSDLLDKYKRALADGENARQRFNKQLEE 117
E ++EELE+L++++E + L +R L E R+R +++EE
Sbjct: 778 KEEIEELEEKRQALQEELEELEEELEEAERRLDAL----ERELESLEQRRERLEQEIEE 832
>gnl|CDD|234252 TIGR03545, TIGR03545, TIGR03545 family protein. This model
represents a relatively rare but broadly distributed
uncharacterized protein family, distributed in 1-2
percent of bacterial genomes, all of which have outer
membranes. In many of these genomes, it is part of a
two-gene pair.
Length = 555
Score = 27.4 bits (61), Expect = 8.0
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 71 KIKEELEDLKKQIEALNEKNSDLLDKYKRALADGENARQRFNKQLEESKLYGIQS 125
K+K+E + K++I++ + + K LA+ + A Q K+LE Y I+S
Sbjct: 223 KLKKEGKADKQKIKSAKNDLQNDKKQLKADLAELKKAPQNDLKRLEN--KYAIKS 275
>gnl|CDD|226258 COG3735, COG3735, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 299
Score = 26.9 bits (60), Expect = 8.1
Identities = 9/44 (20%), Positives = 16/44 (36%), Gaps = 1/44 (2%)
Query: 74 EELEDLKKQIEALNEKNSDLLDKYKRA-LADGENARQRFNKQLE 116
LE ++Q+ AL D + LA G+ ++
Sbjct: 174 LGLETAEEQLAALASLPLDFGIELLIDTLALGDTNADLLETMID 217
>gnl|CDD|234609 PRK00068, PRK00068, hypothetical protein; Validated.
Length = 970
Score = 27.3 bits (61), Expect = 9.1
Identities = 14/86 (16%), Positives = 31/86 (36%), Gaps = 6/86 (6%)
Query: 34 FLWSKAENKKEESESKKDDSDSTASSSSTESTSNVDPKIKEELEDLKKQIEALNE----- 88
F E+ + +++ + + LK+ +A N+
Sbjct: 885 FGDGAGATATGEAPGETKTPPDPPPTAAPPPPTGPVTLSPAKAAALKEAQDAYNKAIEAQ 944
Query: 89 KNSDLLDKYKRALADGENARQRFNKQ 114
K+ D +Y AL + ++A ++NK
Sbjct: 945 KSGD-FAEYGEALKELDDALNKYNKA 969
>gnl|CDD|183558 PRK12495, PRK12495, hypothetical protein; Provisional.
Length = 226
Score = 26.8 bits (59), Expect = 9.3
Identities = 9/44 (20%), Positives = 20/44 (45%)
Query: 24 QTLSAQSNVKFLWSKAENKKEESESKKDDSDSTASSSSTESTSN 67
+A S+ S ++ + +E++ D + +SST +T
Sbjct: 82 AEATAPSDAGSQASPDDDAQPAAEAEAADQSAPPEASSTSATDE 125
>gnl|CDD|218495 pfam05203, Hom_end_hint, Hom_end-associated Hint. Homing
endonucleases are encoded by mobile DNA elements that
are found inserted within host genes in all domains of
life. The crystal structure of the homing nuclease
PI-Sce revealed two domains: an endonucleolytic centre
resembling the C-terminal domain of Drosophila
melanogaster Hedgehog protein, and a a second domain
containing the protein-splicing active site. This Domain
corresponds to the latter protein-splicing domain.
Length = 392
Score = 27.0 bits (60), Expect = 9.5
Identities = 30/159 (18%), Positives = 51/159 (32%), Gaps = 18/159 (11%)
Query: 49 KKDDSDSTASSSSTESTSNVDPKIKEELEDLKKQIEALNEKNSDLLDKYKRALA---DGE 105
D + S + T ++ ++ E L E +EK L K +
Sbjct: 156 LGDGTKKEPFISVSLDTELME-RLIEYARILGLYPEYKDEKEP-LRAKVRLLYGKEPREN 213
Query: 106 NARQRFNKQLEESKLYGIQSFCKDLLDIADTLSLANESVPKEEVKDSNPHLKSLYEGLLM 165
+ K L L + +P + +S ++ GL+
Sbjct: 214 RKSRNLRK---------NNPL-WKALVELGFLRDGVKQIPSFLLTESIEVREAFLAGLID 263
Query: 166 TDGNLKKHAHPVEYPSVVIIPDSIAVMERI-SLEQSLSI 203
+DG ++K I S +VME I L +SL I
Sbjct: 264 SDGYVRKENPDSY--KATIQTISPSVMEGIVHLARSLGI 300
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.309 0.126 0.336
Gapped
Lambda K H
0.267 0.0677 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 11,013,214
Number of extensions: 1007149
Number of successful extensions: 2426
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2251
Number of HSP's successfully gapped: 398
Length of query: 225
Length of database: 10,937,602
Length adjustment: 93
Effective length of query: 132
Effective length of database: 6,812,680
Effective search space: 899273760
Effective search space used: 899273760
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 57 (25.8 bits)