RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2067
(225 letters)
>1dkg_A Nucleotide exchange factor GRPE; HSP70, GRPE, nucleotide exchange
factor, coiled-coil, complex (HSP24/HSP70); 2.80A
{Escherichia coli} SCOP: b.73.1.1 h.1.9.1
Length = 197
Score = 85.5 bits (212), Expect = 6e-21
Identities = 27/136 (19%), Positives = 53/136 (38%), Gaps = 5/136 (3%)
Query: 37 SKAENKKEESESKKDDSDSTASSSSTESTSNVDPKIKEELEDLKKQIEALNEKNSDLLDK 96
S E K E ++ ++ ++ E + L E + D
Sbjct: 2 SSKEQKTPEGQAPEEIIMDQHEEIEAVEPEASAEQVDPRDEKVANLEAQLAEAQTRERDG 61
Query: 97 YKRALADGENARQRFNKQLEESKLYGIQSFCKDLLDIADTLSLANESVPKEEVKDSNPHL 156
R A+ EN R+R +E++ + ++ F +LL + D+L A E K NP +
Sbjct: 62 ILRVKAEMENLRRRTELDIEKAHKFALEKFINELLPVIDSLDRALEVADKA-----NPDM 116
Query: 157 KSLYEGLLMTDGNLKK 172
++ E + +T ++
Sbjct: 117 SAMVEDIELTLKSMLD 132
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A
{Geobacillus kaustophilus}
Length = 213
Score = 82.9 bits (205), Expect = 9e-20
Identities = 34/133 (25%), Positives = 53/133 (39%), Gaps = 6/133 (4%)
Query: 40 ENKKEESESKKDDSDSTASSSSTESTSNVDPKIKEELEDLKKQIEALNEKNSDLLDKYKR 99
E + E + + + EEL K QI L K S++ +Y R
Sbjct: 25 EEAAPQPEEESGGVPLEEAGGEEAAEPAEKAPTAEELAAAKAQIAELEAKLSEMEHRYLR 84
Query: 100 ALADGENARQRFNKQLEESKLYGIQSFCKDLLDIADTLSLANESVPKEEVKDSNPHLKSL 159
AD EN R+R +++E ++ Y QS DLL + D A + E KS+
Sbjct: 85 LYADFENFRRRTRQEMEAAEKYRAQSLASDLLPVLDNFERALKIETDNE------QAKSI 138
Query: 160 YEGLLMTDGNLKK 172
+G+ M +L
Sbjct: 139 LQGMEMVYRSLVD 151
>3a6m_A Protein GRPE, HSP-70 cofactor; coiled-coil, four-helix bundle,
dimer, chaperone, STRE response; 3.23A {Thermus
thermophilus}
Length = 177
Score = 72.7 bits (179), Expect = 3e-16
Identities = 25/113 (22%), Positives = 50/113 (44%), Gaps = 8/113 (7%)
Query: 60 SSTESTSNVDPKIKEELEDLKKQIEALNEKNSDLLDKYKRALADGENARQRFNKQLEESK 119
+ + + +E + L+++++A E+ L DKY R LAD +N R+R ++L+ +
Sbjct: 5 NHENTLEKDLEAVGQEAQALEERLKAAEEELKGLKDKYLRLLADFDNYRKRMEEELKARE 64
Query: 120 LYGIQSFCKDLLDIADTLSLANESVPKEEVKDSNPHLKSLYEGLLMTDGNLKK 172
G+ + LL + D L A E +S+ +G+ +
Sbjct: 65 REGVLKALRALLPVLDDLDRALEFAEASP--------ESIRQGVRAIRDGFFR 109
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 47.2 bits (111), Expect = 2e-06
Identities = 38/193 (19%), Positives = 67/193 (34%), Gaps = 41/193 (21%)
Query: 67 NVDPKIKEELEDLKKQIEALNEKNSDLLDKYKRALADGENARQRF--NKQLEESKL---- 120
N + E L+ L QI+ SD K + + +R +K E L
Sbjct: 193 NSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN 252
Query: 121 ----YGIQSF---CKDLL-----DIADTLSLANESVPKEEVKDSNPHLKSLYE----GLL 164
+F CK LL + D LS A + + H +L LL
Sbjct: 253 VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLD-----HHSMTLTPDEVKSLL 307
Query: 165 MTDGNLKKHAHPVE----YPSVV-IIPDSIAVM-------ERISLEQSLSIFLANFSVEW 212
+ + + P E P + II +SI + ++ ++ +I + S+
Sbjct: 308 LKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIES--SLNV 365
Query: 213 LQSPLAKDIFENL 225
L+ + +F+ L
Sbjct: 366 LEPAEYRKMFDRL 378
Score = 38.7 bits (89), Expect = 0.001
Identities = 40/234 (17%), Positives = 68/234 (29%), Gaps = 66/234 (28%)
Query: 3 FLKRLSAR--QQHF----IGELKSRIP-QTLSAQSNVKFLWSKAENKKEESESKKDDSDS 55
L L ++ F + + IP LS +W K S
Sbjct: 362 SLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSL------IWFDVIKSDVMVVVNKLHKYS 415
Query: 56 TASSSSTESTSNVDPKIKEELEDLKKQIEALNEKNSDLLDKYKRALA-----------DG 104
EST ++ P I +LK ++E + ++D Y D
Sbjct: 416 LVEKQPKESTISI-PSI---YLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQ 471
Query: 105 ----------ENARQ--------------RFNKQLEESKLYGIQSFCKDLLDIADTLS-L 139
+N RF +Q K+ + I +TL L
Sbjct: 472 YFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQ----KIRHDSTAWNASGSILNTLQQL 527
Query: 140 ANESVPKEEVKDSNPHLKSLYEGLLMTDGNLKKHA-HPVEYPSVVIIPDSIAVM 192
K + D++P + L +L L K + + ++ IA+M
Sbjct: 528 KFY---KPYICDNDPKYERLVNAIL---DFLPKIEENLICSKYTDLL--RIALM 573
Score = 38.3 bits (88), Expect = 0.002
Identities = 43/294 (14%), Positives = 83/294 (28%), Gaps = 90/294 (30%)
Query: 2 EFLKRLSARQQHFIGELKSRIPQTLSAQSNVKFLWSKAENKKEESESK-----KDDSDST 56
L+RL + + L NV + K + +
Sbjct: 232 AELRRLLKSKPY---------ENCLLVLLNV---QNAKAWNAFNLSCKILLTTRFKQVTD 279
Query: 57 ASSSSTESTSNVDPKIKEELEDLKKQI--EALNEKNSDL-----------LDKYKRALAD 103
S++T + ++D D K + + L+ + DL L ++ D
Sbjct: 280 FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRD 339
Query: 104 GENARQRFNKQLEESKLYGIQSFCKDLLDIADT------LSLANESVP------------ 145
G + K + KL I ++L+ A+ LS+ S
Sbjct: 340 GLATWDNW-KHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFD 398
Query: 146 --KEEV--------------KDSNPHLKSLYEGLLMT----DGNLKKHAHPVE------- 178
K +V K S+ L + H V+
Sbjct: 399 VIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKT 458
Query: 179 YPSVVIIPDS--------IAV-MERISLEQSLSIF---LANFSVEWLQSPLAKD 220
+ S +IP I ++ I + +++F +F +L+ + D
Sbjct: 459 FDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFR--FLEQKIRHD 510
Score = 28.7 bits (63), Expect = 2.0
Identities = 14/108 (12%), Positives = 34/108 (31%), Gaps = 44/108 (40%)
Query: 124 QSFCKDLLDIADTLSLANESVPKEEVKDSNPHLKSLYEGLLMTDGNLKKHAHPVEYPSVV 183
+F + D D + + KEE+ ++
Sbjct: 27 DAFVDNF-DCKDVQDMPKSILSKEEIDH------------------------------II 55
Query: 184 IIPDSIAVMERI------SLEQSLSIFL-----ANFSVEWLQSPLAKD 220
+ D+++ R+ E+ + F+ N+ ++L SP+ +
Sbjct: 56 MSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINY--KFLMSPIKTE 101
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.7 bits (87), Expect = 0.002
Identities = 43/230 (18%), Positives = 80/230 (34%), Gaps = 80/230 (34%)
Query: 13 HFIGELKSRIPQTLSAQSNVKFLWSKAENKKEESESKKDDSDSTASS----------SST 62
HF GE RI + SA ++ + K ++E + + ++S S+T
Sbjct: 1675 HFGGEKGKRIRENYSA-----MIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSAT 1729
Query: 63 ESTSNVDPKI----KEELEDLKKQIEALNEKNSDLLDKYKRA---LADGENARQRFNKQL 115
+ T P + K EDLK + L ++ A L GE
Sbjct: 1730 QFTQ---PALTLMEKAAFEDLKS--KGLIPADATF------AGHSL--GEY--------- 1767
Query: 116 EESKLYGIQSFCKDLLDIADTLSL-------ANESVPKEEVKDSNPHLKSLYEGLLMTDG 168
+ L D++ I + + +VP++E+ SN G++ +
Sbjct: 1768 --AALAS----LADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNY-------GMIAIN- 1813
Query: 169 NLKKHAHPVEYPSVVIIP---DSI-AVMERISLEQSLSIFLANFSVEWLQ 214
P V +++ V+ER+ + + N++VE Q
Sbjct: 1814 -----------PGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQ 1852
Score = 36.2 bits (83), Expect = 0.007
Identities = 42/253 (16%), Positives = 76/253 (30%), Gaps = 92/253 (36%)
Query: 20 SRIPQTLSAQS-NVKFL-----WSKAENKKEE-SESKKDDSDSTASSSSTESTSNVDPKI 72
+R P TLS S L + A +E+ ++ + ++ A+ +P
Sbjct: 6 TR-PLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADD--------EPTT 56
Query: 73 KEELEDLKK---QIEALNEKNSDLLDKYKRALADGENARQRFNKQLEESKLYG--IQSFC 127
EL + K + +L E + + ++ + L F E L G I +
Sbjct: 57 PAEL--VGKFLGYVSSLVEPSK--VGQFDQVL---NLCLTEF----ENCYLEGNDIHALA 105
Query: 128 KDLLDIADT---------------LSLANESVPK-------EEVKDSNPH---------- 155
LL DT +A K V + N
Sbjct: 106 AKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGN 165
Query: 156 -------LKSLYEGLLMTDGNLKKHAHPVEYPSVV--IIPDSIAVMERIS--LEQSLSIF 204
L+ LY+ Y +V +I S + + + +F
Sbjct: 166 TDDYFEELRDLYQ----------------TYHVLVGDLIKFSAETLSELIRTTLDAEKVF 209
Query: 205 LANFSV-EWLQSP 216
++ EWL++P
Sbjct: 210 TQGLNILEWLENP 222
Score = 28.5 bits (63), Expect = 2.1
Identities = 8/43 (18%), Positives = 17/43 (39%)
Query: 120 LYGIQSFCKDLLDIADTLSLANESVPKEEVKDSNPHLKSLYEG 162
LY +D+ + AD ++ +NP +++ G
Sbjct: 1635 LYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFG 1677
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 34.7 bits (80), Expect = 0.020
Identities = 11/82 (13%), Positives = 29/82 (35%)
Query: 38 KAENKKEESESKKDDSDSTASSSSTESTSNVDPKIKEELEDLKKQIEALNEKNSDLLDKY 97
+ E + + D S ++ +N ++EE+ L+K++ + + +
Sbjct: 955 EITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWA 1014
Query: 98 KRALADGENARQRFNKQLEESK 119
+ + E +Q K
Sbjct: 1015 DKYKHETEQLVSELKEQNTLLK 1036
Score = 26.6 bits (59), Expect = 8.2
Identities = 13/84 (15%), Positives = 34/84 (40%), Gaps = 9/84 (10%)
Query: 37 SKAENKKEESESKKDDSDSTASSSSTESTSNVDPKIKEELEDLKKQIEALNEKNSDLLDK 96
++ E K E + K ++ S + + +K E E+L ++I ++ ++ ++K
Sbjct: 1003 TQTEKKTIEEWADKYKHETEQLVSELKEQNT---LLKTEKEELNRRIHDQAKEITETMEK 1059
Query: 97 YKRALADGENARQRFNKQLEESKL 120
++ L + +L
Sbjct: 1060 ------KLVEETKQLELDLNDERL 1077
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A
{Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Length = 86
Score = 29.5 bits (67), Expect = 0.23
Identities = 10/45 (22%), Positives = 17/45 (37%)
Query: 75 ELEDLKKQIEALNEKNSDLLDKYKRALADGENARQRFNKQLEESK 119
+L L+ Q+ A K DL D R +++ E +
Sbjct: 4 QLSQLQCQLAAKEAKLRDLEDSLARERDTSRRLLAEKEREMAEMR 48
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament,
structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Length = 93
Score = 29.1 bits (66), Expect = 0.32
Identities = 8/47 (17%), Positives = 21/47 (44%)
Query: 65 TSNVDPKIKEELEDLKKQIEALNEKNSDLLDKYKRALADGENARQRF 111
S + +EE+ +L++Q++ L + + + D R++
Sbjct: 47 KSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKL 93
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 30.6 bits (69), Expect = 0.41
Identities = 19/118 (16%), Positives = 41/118 (34%), Gaps = 5/118 (4%)
Query: 7 LSARQQHFIGELKSRIPQTLSAQSNVKFLWSKAENKKEESESKKDDSDSTASSSSTESTS 66
L ++ GE Q Q+ + L ++ K+EE ++ + S +
Sbjct: 1058 LEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKK 1117
Query: 67 NVD-----PKIKEELEDLKKQIEALNEKNSDLLDKYKRALADGENARQRFNKQLEESK 119
+ ++E+LE K ++ DL ++ + + E+ Q E
Sbjct: 1118 IRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTATQQELRG 1175
Score = 28.3 bits (63), Expect = 2.3
Identities = 11/116 (9%), Positives = 40/116 (34%), Gaps = 2/116 (1%)
Query: 4 LKRLSARQQHFIGELKSRIPQTLSAQSNVKFLWSKAENKKEESESKKDDSDSTASSSSTE 63
++L + G++K L + L E K E ++ +
Sbjct: 971 RQKLQLEKVTADGKIKKMEDDILIMEDQNNKL--TKERKLLEERVSDLTTNLAEEEEKAK 1028
Query: 64 STSNVDPKIKEELEDLKKQIEALNEKNSDLLDKYKRALADGENARQRFNKQLEESK 119
+ + + K + + +L+ +++ + +L ++ + + ++ + +
Sbjct: 1029 NLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIA 1084
Score = 27.5 bits (61), Expect = 4.1
Identities = 19/100 (19%), Positives = 36/100 (36%), Gaps = 9/100 (9%)
Query: 4 LKRLSARQQHFIGELKSRIPQTLSAQSNVKFLWSKAENKKEESESKKDDSDSTASSSSTE 63
L + Q + L+ Q +A ++ L S + +E+ ES+K +
Sbjct: 1090 LAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKR-- 1147
Query: 64 STSNVDPKIKEELEDLKKQIEALNEKNSDLLDKYKRALAD 103
+ EELE LK ++E + + + D
Sbjct: 1148 -------DLSEELEALKTELEDTLDTTATQQELRGSDYKD 1180
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.5 bits (65), Expect = 0.47
Identities = 13/57 (22%), Positives = 17/57 (29%), Gaps = 31/57 (54%)
Query: 108 RQRFNKQLEES-KLYGIQSFCKDLLDIADTLSLANESVPKEEVKDSNPHL--KSLYE 161
+Q K+L+ S KLY DS P L K+ E
Sbjct: 19 KQAL-KKLQASLKLYA----------------------D-----DSAPALAIKATME 47
Score = 26.1 bits (56), Expect = 7.2
Identities = 9/29 (31%), Positives = 14/29 (48%), Gaps = 3/29 (10%)
Query: 38 KAENKKEESESKK--DDS-DSTASSSSTE 63
K KK ++ K DDS + A ++ E
Sbjct: 19 KQALKKLQASLKLYADDSAPALAIKATME 47
>1dfa_A PI-SCEI endonuclease; intein, homing endonuclease, hydrolase; 2.00A
{Saccharomyces cerevisiae} SCOP: b.86.1.2 d.95.2.2
d.95.2.2 PDB: 1lws_A 1lwt_A 1vde_A 1ef0_A 1um2_A 1jva_A
Length = 454
Score = 30.2 bits (66), Expect = 0.54
Identities = 19/114 (16%), Positives = 44/114 (38%), Gaps = 1/114 (0%)
Query: 60 SSTESTSNVDPKIKEELEDLKKQIEALNEKNSDLLDKYKRALADGENARQRFNKQLEESK 119
S +T +VD + +E + + E LN ++ D+ + +A N + +
Sbjct: 220 LSDRATFSVDSRDTSLMERVTEYAEKLNLC-AEYKDRKEPQVAKTVNLYSKVVRGNGIRN 278
Query: 120 LYGIQSFCKDLLDIADTLSLANESVPKEEVKDSNPHLKSLYEGLLMTDGNLKKH 173
++ D + L +++P D+ ++ GL+ +DG +
Sbjct: 279 NLNTENPLWDAIVGLGFLKDGVKNIPSFLSTDNIGTRETFLAGLIDSDGYVTDE 332
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced
antiviral GTPase, membrane associated, PR binding; 3.50A
{Homo sapiens} PDB: 3zys_B
Length = 608
Score = 30.0 bits (67), Expect = 0.67
Identities = 13/64 (20%), Positives = 29/64 (45%), Gaps = 7/64 (10%)
Query: 72 IKEELEDLKKQIEALNEKNSDLLDKYKRALADGENARQRFNKQLEESKLYGIQSFCKDLL 131
I + L L+ QI+ +++ ++ L KY + + EN + F + +F +D+
Sbjct: 310 ICKSLPLLENQIKETHQRITEELQKYGVDIPEDENEKMFFLIDK-------VNAFNQDIT 362
Query: 132 DIAD 135
+
Sbjct: 363 ALMQ 366
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel
inter domain, chaperone; 3.94A {Mycobacterium
tuberculosis} PDB: 3m9d_A
Length = 251
Score = 29.4 bits (65), Expect = 0.72
Identities = 14/86 (16%), Positives = 34/86 (39%)
Query: 38 KAENKKEESESKKDDSDSTASSSSTESTSNVDPKIKEELEDLKKQIEALNEKNSDLLDKY 97
+ E E + ++ S+ + ++ L+ +I++L +NS L++
Sbjct: 18 LSSGDAAELEQLRREAAVLREQLENAVGSHAPTRSARDIHQLEARIDSLAARNSKLMETL 77
Query: 98 KRALADGENARQRFNKQLEESKLYGI 123
K A R+ ++ + YG+
Sbjct: 78 KEARQQLLALREEVDRLGQPPSGYGV 103
>3r8s_H 50S ribosomal protein L9; protein biosynthesis, RNA, tRNA, transfer
RNA, 23S ribosomal subunit, ribosome recycling factor,
RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_F
1p86_F 1vs8_H 1vs6_H 2aw4_H 2awb_H 2gya_F 2gyc_F 1vt2_H
2i2v_H 2j28_H 2i2t_H* 2qao_H* 2qba_H* 2qbc_H* 2qbe_H
2qbg_H 2qbi_H* 2qbk_H* 2qov_H ...
Length = 149
Score = 28.7 bits (65), Expect = 0.86
Identities = 21/88 (23%), Positives = 37/88 (42%), Gaps = 7/88 (7%)
Query: 73 KEELEDLKKQIEALNEKNSDLLDKYKRALADGENARQRFNKQLEESKLYG-IQSFCKDLL 131
E E + ++EA + + + + +K +E KL+G I +
Sbjct: 44 IEFFEARRAELEAKLAEVLAAANARAEKI-NALETVTIASKAGDEGKLFGSIGT-----R 97
Query: 132 DIADTLSLANESVPKEEVKDSNPHLKSL 159
DIAD ++ A V K EV+ N L++
Sbjct: 98 DIADAVTAAGVEVAKSEVRLPNGVLRTT 125
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 29.0 bits (64), Expect = 1.0
Identities = 13/83 (15%), Positives = 32/83 (38%), Gaps = 22/83 (26%)
Query: 37 SKAENKKEESESKKDDSDSTASSSSTESTSNVDPKIKEELEDLKKQIEALNEKNSDLLDK 96
++A+ +E ES + + +++E K + EK L++
Sbjct: 75 AQADRLTQEPESIRKWREEQ------------RKRLQELDAASKVMEQEWREKAKKDLEE 122
Query: 97 YKRALADGENARQRFNKQLEESK 119
+ + R ++Q+E++K
Sbjct: 123 WNQ----------RQSEQVEKNK 135
Score = 27.4 bits (60), Expect = 3.1
Identities = 5/56 (8%), Positives = 19/56 (33%), Gaps = 1/56 (1%)
Query: 40 ENKKEESESKKDDSDSTASSSSTESTSNVDPKI-KEELEDLKKQIEALNEKNSDLL 94
+ S+ + + A E ++ K ++ + + ++D++
Sbjct: 99 QELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPDADII 154
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics,
structure 2 function project, S2F, unknown function;
2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Length = 363
Score = 28.5 bits (65), Expect = 1.7
Identities = 24/115 (20%), Positives = 47/115 (40%), Gaps = 28/115 (24%)
Query: 67 NVDPK-----IKEEL-----EDLKKQIEAL------NEKNS----DLLDKYKRALADGEN 106
+DP I EL + ++ I+ L +K + +++K L +
Sbjct: 118 KIDPLDDIDTINTELALADLDSCERAIQRLQKRAKGGDKEAKFELSVMEKILPVLENAGM 177
Query: 107 ARQRFNKQLEESKLYGIQSFCKDLLDIADTLSLANESVPKEEVKDSNPHLKSLYE 161
R EE + I+S+ L + T+ +AN + E+ ++NP+L + E
Sbjct: 178 IRS-VGLDKEELQA--IKSYN--FLTLKPTMYIANVN---EDGFENNPYLDRVRE 224
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil,
heptad repeat, stutter; 2.3A {Homo sapiens} SCOP:
h.1.20.1
Length = 84
Score = 26.7 bits (60), Expect = 2.0
Identities = 8/45 (17%), Positives = 22/45 (48%)
Query: 75 ELEDLKKQIEALNEKNSDLLDKYKRALADGENARQRFNKQLEESK 119
E++ LK E+L + ++ + + A+ ++ R +++ K
Sbjct: 2 EVDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMK 46
>1hk7_A Heat shock protein HSP82; ATPase, chaperone; 2.5A {Saccharomyces
cerevisiae} SCOP: d.14.1.8
Length = 288
Score = 27.9 bits (63), Expect = 2.6
Identities = 8/31 (25%), Positives = 13/31 (41%)
Query: 73 KEELEDLKKQIEALNEKNSDLLDKYKRALAD 103
EE ++ K + E ++ L K L D
Sbjct: 258 LEETDEEKAEREKEIKEYEPLTKALKEILGD 288
>3hjc_A Heat shock protein 83-1; sleeping sickness, structura genomics,
stress response protein, chaperone, structural GE
consortium, SGC; 2.50A {Leishmania major}
Length = 444
Score = 28.0 bits (63), Expect = 2.7
Identities = 10/30 (33%), Positives = 12/30 (40%)
Query: 74 EELEDLKKQIEALNEKNSDLLDKYKRALAD 103
EE E+ K+Q E L K L D
Sbjct: 278 EESEEEKQQREEEKAACEKLCKTMKEVLGD 307
>2cge_A ATP-dependent molecular chaperone HSP82; chaperone complex, heat
shock protein, CO-chaperone, ATP-binding, heat shock;
3.0A {Saccharomyces cerevisiae}
Length = 405
Score = 28.0 bits (63), Expect = 2.7
Identities = 8/31 (25%), Positives = 13/31 (41%)
Query: 73 KEELEDLKKQIEALNEKNSDLLDKYKRALAD 103
EE ++ K + E ++ L K L D
Sbjct: 258 LEETDEEKAEREKEIKEYEPLTKALKEILGD 288
>3mb4_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180,
polybromo-1D, PBRM1, BRG associated factor 180,
structural genomics consortium, SGC; 1.66A {Homo
sapiens} PDB: 3g0j_A 2yqd_A
Length = 124
Score = 26.9 bits (60), Expect = 3.2
Identities = 9/40 (22%), Positives = 20/40 (50%)
Query: 64 STSNVDPKIKEELEDLKKQIEALNEKNSDLLDKYKRALAD 103
S S + PK + + +++++ + E + DK R L+
Sbjct: 1 SMSGISPKKSKYMTPMQQKLNEVYEAVKNYTDKRGRRLSA 40
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural
genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Length = 263
Score = 27.7 bits (62), Expect = 3.2
Identities = 5/21 (23%), Positives = 8/21 (38%)
Query: 63 ESTSNVDPKIKEELEDLKKQI 83
E NVD + + K+
Sbjct: 154 EPFENVDAARRHVISRYIKEY 174
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90,
heat shock protein, ATP-binding, heat shock,
nucleotide-binding, acetylation; HET: ATP; 3.1A
{Saccharomyces cerevisiae}
Length = 677
Score = 27.8 bits (62), Expect = 3.2
Identities = 8/31 (25%), Positives = 13/31 (41%)
Query: 73 KEELEDLKKQIEALNEKNSDLLDKYKRALAD 103
EE ++ K + E ++ L K L D
Sbjct: 530 LEETDEEKAEREKEIKEYEPLTKALKEILGD 560
>3hup_A Early activation antigen CD69; C-type lectin-like domain,
disulfide bond, glycoprotein, LEC membrane,
phosphoprotein, signal-anchor, transmembrane; 1.37A
{Homo sapiens} PDB: 1e87_A 1e8i_A 3cck_A
Length = 130
Score = 27.0 bits (60), Expect = 3.2
Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 9/37 (24%)
Query: 1 MEFLKRLSARQQHFIGELKSRIPQTLSAQSNVKFLWS 37
M FLKR + R++H++G L + + WS
Sbjct: 60 MNFLKRYAGREEHWVG---------LKKEPGHPWKWS 87
>3lvh_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 9.00A {Bos
taurus}
Length = 205
Score = 27.2 bits (59), Expect = 3.4
Identities = 15/82 (18%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Query: 39 AENKKEESESKKDDSDSTASSSSTESTSNVDPKIKEELEDLKKQIEALNEKNSDLLDKYK 98
A + + +D A+ + + + I++ E+ +K+++ L+ + + +++
Sbjct: 69 ATVNGDVFQEANGPADGYAAIAQADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWR 128
Query: 99 -RALADGENARQRFNKQLEESK 119
+A D E QR ++Q+E++K
Sbjct: 129 EKAKKDLEEWNQRQSEQVEKNK 150
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter,
lipid flippase, hydrolase, inner membrane, lipid
transport, membrane; 5.50A {Vibrio cholerae}
Length = 582
Score = 27.5 bits (62), Expect = 3.6
Identities = 7/30 (23%), Positives = 12/30 (40%)
Query: 4 LKRLSARQQHFIGELKSRIPQTLSAQSNVK 33
+++S Q +G + S Q L V
Sbjct: 189 FRKISRNMQTAMGHVTSSAEQMLKGHKVVL 218
>1r48_A Proline/betaine transporter; osmosensor, cytoplasmic,
coiled-coil, antiparallel, two- stranded homodimer,
transport protein; NMR {Synthetic} SCOP: h.4.15.1
Length = 33
Score = 24.9 bits (54), Expect = 3.7
Identities = 7/28 (25%), Positives = 18/28 (64%)
Query: 72 IKEELEDLKKQIEALNEKNSDLLDKYKR 99
I+++++D+ +I L K + L+ ++ R
Sbjct: 6 IEQKIDDIDHEIADLQAKRTRLVQQHPR 33
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter,
lipid flippase, hydrolase, inner membrane, lipid
transport, membrane; HET: ANP; 3.70A {Salmonella
typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A*
3b5z_A* 3b5w_A
Length = 582
Score = 27.5 bits (62), Expect = 4.5
Identities = 6/30 (20%), Positives = 13/30 (43%)
Query: 4 LKRLSARQQHFIGELKSRIPQTLSAQSNVK 33
+ +S Q+ +G++ + Q L V
Sbjct: 189 FRSISKNMQNTMGQVTTSAEQMLKGHKEVL 218
>3q6m_A Heat shock protein HSP 90-alpha; three domains, trimer of dimer,
hexamer, chaperone; 3.00A {Homo sapiens} PDB: 3q6n_A
Length = 448
Score = 27.3 bits (61), Expect = 4.6
Identities = 9/30 (30%), Positives = 12/30 (40%)
Query: 74 EELEDLKKQIEALNEKNSDLLDKYKRALAD 103
E E+ KK+ E K +L K L
Sbjct: 262 PEDEEEKKKQEEKKTKFENLCKIMKDILEK 291
>2vkl_A RV0948C/MT0975; helical, intracellular, chorismate mutase,
isomerase; 1.65A {Mycobacterium tuberculosis} PDB:
2qbv_A 2w19_C 2w1a_C*
Length = 90
Score = 25.8 bits (57), Expect = 4.7
Identities = 5/33 (15%), Positives = 19/33 (57%)
Query: 64 STSNVDPKIKEELEDLKKQIEALNEKNSDLLDK 96
+ ++ + E++ L+++I+ L+ + L+ +
Sbjct: 2 NLEMLESQPVPEIDTLREEIDRLDAEILALVKR 34
>1fm5_A Early activation antigen CD69; C-type lectin-like domain, natural
killer cell receptor, lectin, C-type lectin, immune
system; 2.27A {Homo sapiens} SCOP: d.169.1.1
Length = 199
Score = 26.9 bits (59), Expect = 5.0
Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 9/37 (24%)
Query: 1 MEFLKRLSARQQHFIGELKSRIPQTLSAQSNVKFLWS 37
M FLKR + R++H++G L + + WS
Sbjct: 129 MNFLKRYAGREEHWVG---------LKKEPGHPWKWS 156
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like
protein 1A, GTPase, membrane fission, motor Pro; HET:
GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Length = 360
Score = 27.1 bits (60), Expect = 5.1
Identities = 10/54 (18%), Positives = 21/54 (38%), Gaps = 9/54 (16%)
Query: 72 IKEELEDLKKQIEALNEKNSDLLDKYKRALADGENAR---------QRFNKQLE 116
IK + ++ I + L + + +A G ++R +K+LE
Sbjct: 295 IKSRIPGIQSLINKTVLELETELSRLGKPIAHGTDSRVDPAIMERRSAISKRLE 348
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission,
nucleotide-binding, endocytosis, motor protein; HET:
GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Length = 353
Score = 27.2 bits (60), Expect = 5.3
Identities = 6/38 (15%), Positives = 16/38 (42%)
Query: 72 IKEELEDLKKQIEALNEKNSDLLDKYKRALADGENARQ 109
I++ L L+ ++++ +++YK D
Sbjct: 289 IRDTLPGLRNKLQSQLLSIEKEVEEYKNFRPDKHGTDS 326
>3nvt_A 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; bifunctional
3-deoxy-7-phosphoheptulonate synthase/chorismat listeria
monocytogenes EGD-E; 1.95A {Listeria monocytogenes} PDB:
3tfc_A*
Length = 385
Score = 27.1 bits (60), Expect = 5.3
Identities = 23/125 (18%), Positives = 42/125 (33%), Gaps = 12/125 (9%)
Query: 74 EELEDLKKQIEALNEKNSDLLDKYKRALAD------GENARQRFNKQLEESKLYGIQSFC 127
LE+L+ Q++ LN +L+ K + L G RF+ E L I +
Sbjct: 28 TNLEELRTQVDQLNIDLLELISK-RANLVQEIGKIKGTQGSLRFDPLREREMLNTILAAN 86
Query: 128 KDLLDIADTLSLANESVPKEEVKDSNPHLKSLYEGLLMTDGNLKKHAHPVEYPSVVIIPD 187
+ + + + + KE K + + L+ KK V + I
Sbjct: 87 EGPFEDSTV-----QKLFKEIFKAGLELQEEDHSKALLVSRKNKKEDTIVTVKGLPIGNG 141
Query: 188 SIAVM 192
+
Sbjct: 142 EPVFV 146
>2k9m_A RNA polymerase sigma factor RPON; core binding domain,
transcription; NMR {Aquifex aeolicus}
Length = 130
Score = 26.0 bits (58), Expect = 5.6
Identities = 12/47 (25%), Positives = 23/47 (48%)
Query: 79 LKKQIEALNEKNSDLLDKYKRALADGENARQRFNKQLEESKLYGIQS 125
L+ QIE + + ++L K R L G+ + +L +L+ + S
Sbjct: 80 LELQIEEIYPEEEEILKKALRDLKRGKKLKPEIKGKLSRLRLFPLSS 126
>2dc0_A Probable amidase; structural genomics, NPPSFA, national project on
protein structural and functional analyses; 2.00A
{Thermus thermophilus}
Length = 434
Score = 27.1 bits (61), Expect = 5.7
Identities = 9/60 (15%), Positives = 23/60 (38%)
Query: 81 KQIEALNEKNSDLLDKYKRALADGENARQRFNKQLEESKLYGIQSFCKDLLDIADTLSLA 140
++ +A ++N+ + A + + + L+G+ KDL + + A
Sbjct: 26 ERAKAFQDRNALAYLDEEAARKEALALTEELRRGQVRGPLHGLPLTVKDLFPVKGMPTRA 85
>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A
1r70_B 3cm9_A
Length = 475
Score = 26.8 bits (59), Expect = 6.2
Identities = 10/37 (27%), Positives = 13/37 (35%)
Query: 26 LSAQSNVKFLWSKAENKKEESESKKDDSDSTASSSST 62
L S V F W+ + K + D S SS
Sbjct: 274 LRDASGVTFTWTPSSGKSAVQGPPERDLCGCYSVSSV 310
>3pmo_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr; lipid A
biosynthesis pathway, transferase; 1.30A {Pseudomonas
aeruginosa}
Length = 372
Score = 26.8 bits (60), Expect = 7.0
Identities = 4/23 (17%), Positives = 10/23 (43%)
Query: 70 PKIKEELEDLKKQIEALNEKNSD 92
+ L+ L+K++ A+
Sbjct: 346 DDMARRLQQLEKRLAAVTSSGDA 368
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative,
no structural genomics consortium, NESG, structural
protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Length = 119
Score = 25.6 bits (57), Expect = 7.5
Identities = 7/43 (16%), Positives = 18/43 (41%), Gaps = 3/43 (6%)
Query: 64 STSNVDPKIKEELEDLKKQIEALNEKNSDL---LDKYKRALAD 103
S + +EE+ +L++Q++ L + + D +
Sbjct: 10 HMSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMR 52
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome
segregation, cell adhesion, kleisin, MIT cell cycle;
HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP:
c.37.1.12
Length = 430
Score = 26.6 bits (59), Expect = 8.3
Identities = 8/80 (10%), Positives = 30/80 (37%)
Query: 39 AENKKEESESKKDDSDSTASSSSTESTSNVDPKIKEELEDLKKQIEALNEKNSDLLDKYK 98
+++ E ++++ + S ++ + + E +N + L + K
Sbjct: 193 SKSATESIKNRRRIHGELKTYKSPGLEVLFQGPRGSRYDEAEGRFEVINNETEQLKAEEK 252
Query: 99 RALADGENARQRFNKQLEES 118
+ L +++ + E++
Sbjct: 253 KILNQFLKIKKKRKELFEKT 272
>2jrh_A Mitogen-activated protein kinase kinase kinase 3; kinase signaling
domain, transferase; NMR {Homo sapiens} PDB: 2pph_A
Length = 94
Score = 25.3 bits (55), Expect = 8.8
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 148 EVKDSNPHLKSLYEGLLMTDGNLKKHAH 175
++ D + +KSL LL D NL+ H H
Sbjct: 65 DILDRSSSMKSLRILLLSQDRNLEHHHH 92
>4aj5_K Spindle and kinetochore-associated protein 2; cell cycle, SKA
complex, mitosis, cell division, kinetochore microtubule
attachment; 3.32A {Homo sapiens}
Length = 123
Score = 25.6 bits (55), Expect = 9.7
Identities = 15/94 (15%), Positives = 35/94 (37%), Gaps = 7/94 (7%)
Query: 27 SAQSNVKFLWSKAEN------KKEESESKKDDSDSTASSSSTESTSNVDPKIKEELEDLK 80
+ ++ ++ KAE+ + E E K + DS + + + IK + L
Sbjct: 5 AEVDKLELMFQKAESDLDYIQYRLEYEIKTNHPDSASEKNPVTLLKELS-VIKSRYQTLY 63
Query: 81 KQIEALNEKNSDLLDKYKRALADGENARQRFNKQ 114
+ + + + + + + N Q+ KQ
Sbjct: 64 ARFKPVAVEQKESKSRICATVKKTMNMIQKLQKQ 97
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.309 0.126 0.336
Gapped
Lambda K H
0.267 0.0439 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,131,843
Number of extensions: 171654
Number of successful extensions: 637
Number of sequences better than 10.0: 1
Number of HSP's gapped: 608
Number of HSP's successfully gapped: 151
Length of query: 225
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 135
Effective length of database: 4,188,903
Effective search space: 565501905
Effective search space used: 565501905
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 55 (25.7 bits)