RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2067
         (225 letters)



>d1m22a_ c.117.1.1 (A:) Peptide amidase Pam {Stenotrophomonas
           maltophilia [TaxId: 40324]}
          Length = 490

 Score = 32.0 bits (71), Expect = 0.057
 Identities = 12/65 (18%), Positives = 23/65 (35%), Gaps = 3/65 (4%)

Query: 74  EELEDLKKQIEALNEKNSDL---LDKYKRALADGENARQRFNKQLEESKLYGIQSFCKDL 130
              +   ++I AL+     L   ++    AL +     +          L+GI    KD 
Sbjct: 25  TLTQAYLQRIAALDRTGPRLRAVIELNPDALKEAAERDRERRDGRLRGPLHGIPLLLKDN 84

Query: 131 LDIAD 135
           ++ A 
Sbjct: 85  INAAP 89


>d2f2aa1 c.117.1.1 (A:1-485) Glutamyl-tRNA(Gln) amidotransferase
           subunit A {Staphylococcus aureus [TaxId: 1280]}
          Length = 485

 Score = 31.7 bits (71), Expect = 0.067
 Identities = 13/64 (20%), Positives = 25/64 (39%), Gaps = 1/64 (1%)

Query: 73  KEELEDLKKQIEALNEK-NSDLLDKYKRALADGENARQRFNKQLEESKLYGIQSFCKDLL 131
            + ++D+   IE  +    S L    + A+   +   +   K   + KL+GI    KD +
Sbjct: 23  SDVVKDIYDAIEETDPTIKSFLALDKENAIKKAQELDELQAKDQMDGKLFGIPMGIKDNI 82

Query: 132 DIAD 135
               
Sbjct: 83  ITNG 86


>d2p0ma1 a.119.1.2 (A:113-663) 15-Lipoxygenase {Rabbit (Oryctolagus
           cuniculus) [TaxId: 9986]}
          Length = 551

 Score = 27.3 bits (60), Expect = 1.9
 Identities = 6/46 (13%), Positives = 20/46 (43%)

Query: 180 PSVVIIPDSIAVMERISLEQSLSIFLANFSVEWLQSPLAKDIFENL 225
           P++      ++++ ++  +Q + + L     E+   P  + + E  
Sbjct: 470 PNLHQSSLQMSIVWQLGRDQPIMVPLGQHQEEYFSGPEPRAVLEKF 515


>d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional)
           {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
          Length = 368

 Score = 26.4 bits (57), Expect = 3.4
 Identities = 7/44 (15%), Positives = 18/44 (40%)

Query: 76  LEDLKKQIEALNEKNSDLLDKYKRALADGENARQRFNKQLEESK 119
           L    +++   NE+ +  L+  K  L      R+  +  + + +
Sbjct: 1   LRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLR 44


>d1bjta_ e.11.1.1 (A:) DNA topoisomerase II, C-terminal fragment
           (residues 410-1202) {Baker's yeast (Saccharomyces
           cerevisiae) [TaxId: 4932]}
          Length = 760

 Score = 26.3 bits (57), Expect = 3.8
 Identities = 9/47 (19%), Positives = 20/47 (42%), Gaps = 2/47 (4%)

Query: 71  KIKEELEDLKKQIEALNEKNSDLLDKYKRALADGENARQRFNKQLEE 117
           K+ ++ ++ + ++E L        D +   L   E   Q F ++  E
Sbjct: 713 KLLKQKQEKETELENL--LKLSAKDIWNTDLKAFEVGYQEFLQRDAE 757


>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus
           thermophilus [TaxId: 274]}
          Length = 387

 Score = 25.4 bits (55), Expect = 7.2
 Identities = 11/73 (15%), Positives = 30/73 (41%), Gaps = 11/73 (15%)

Query: 71  KIKEELEDLKKQIEALN-----EKNSDLLDKYKRALADGENARQRFNKQLEESKLYGIQS 125
           + +  L++++++IE         + ++L       L   E   +  +++L  ++      
Sbjct: 317 EAQHRLDEVRREIELAERQYDLNRAAELRYG---ELPKLEAEVEALSEKLRGARFV---R 370

Query: 126 FCKDLLDIADTLS 138
                 DIA+ +S
Sbjct: 371 LEVTEEDIAEIVS 383


>d1zkea1 a.30.6.1 (A:1-79) Hypothetical protein HP1531
          {Helicobacter pylori [TaxId: 210]}
          Length = 79

 Score = 23.7 bits (51), Expect = 9.8
 Identities = 11/24 (45%), Positives = 16/24 (66%)

Query: 71 KIKEELEDLKKQIEALNEKNSDLL 94
          ++ EE+E LK+ I ALN+    LL
Sbjct: 54 QLSEEVERLKELINALNKIKKGLL 77


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.309    0.126    0.336 

Gapped
Lambda     K      H
   0.267   0.0734    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 752,730
Number of extensions: 32474
Number of successful extensions: 181
Number of sequences better than 10.0: 1
Number of HSP's gapped: 180
Number of HSP's successfully gapped: 56
Length of query: 225
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 143
Effective length of database: 1,281,736
Effective search space: 183288248
Effective search space used: 183288248
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 51 (23.4 bits)