Query psy2068
Match_columns 97
No_of_seqs 142 out of 1005
Neff 5.9
Searched_HMMs 46136
Date Fri Aug 16 23:30:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2068.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2068hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK14147 heat shock protein Gr 100.0 2E-31 4.3E-36 191.8 9.0 80 18-97 92-171 (172)
2 PRK14148 heat shock protein Gr 100.0 3E-31 6.6E-36 194.1 9.3 80 18-97 116-195 (195)
3 PRK14151 heat shock protein Gr 100.0 4.9E-31 1.1E-35 190.4 8.7 80 18-97 97-176 (176)
4 COG0576 GrpE Molecular chapero 100.0 4.8E-31 1E-35 192.5 8.7 79 19-97 114-192 (193)
5 PRK14150 heat shock protein Gr 100.0 6.3E-31 1.4E-35 192.0 9.3 79 18-96 115-193 (193)
6 PRK10325 heat shock protein Gr 100.0 6.9E-31 1.5E-35 192.3 9.0 80 18-97 116-195 (197)
7 PRK14153 heat shock protein Gr 100.0 8.7E-31 1.9E-35 191.6 9.4 80 18-97 109-188 (194)
8 PRK14161 heat shock protein Gr 100.0 8.2E-31 1.8E-35 189.6 8.8 80 18-97 97-177 (178)
9 PRK14141 heat shock protein Gr 100.0 1.1E-30 2.3E-35 193.0 9.3 80 17-96 112-191 (209)
10 PRK14140 heat shock protein Gr 100.0 1.1E-30 2.4E-35 190.7 8.9 79 18-96 113-191 (191)
11 PRK14145 heat shock protein Gr 100.0 2.6E-30 5.6E-35 189.4 9.1 79 18-96 118-196 (196)
12 PRK14155 heat shock protein Gr 100.0 2.8E-30 6E-35 190.6 9.3 79 18-96 92-171 (208)
13 PRK14158 heat shock protein Gr 100.0 2.2E-30 4.7E-35 189.5 8.4 79 18-96 115-194 (194)
14 PRK14144 heat shock protein Gr 100.0 3.9E-30 8.5E-35 188.8 9.4 79 19-97 121-199 (199)
15 PRK14162 heat shock protein Gr 100.0 3.5E-30 7.6E-35 188.4 8.7 79 18-96 115-194 (194)
16 PRK14139 heat shock protein Gr 100.0 3.9E-30 8.5E-35 187.0 8.7 79 18-97 106-184 (185)
17 PRK14159 heat shock protein Gr 100.0 3E-30 6.5E-35 186.4 8.0 77 19-96 100-176 (176)
18 PRK14163 heat shock protein Gr 100.0 5.2E-30 1.1E-34 189.8 9.0 78 20-97 111-188 (214)
19 PRK14146 heat shock protein Gr 100.0 6.4E-30 1.4E-34 189.4 9.2 80 18-97 130-213 (215)
20 PRK14149 heat shock protein Gr 100.0 1.2E-29 2.6E-34 185.3 9.2 79 18-97 112-190 (191)
21 PRK14143 heat shock protein Gr 100.0 9.6E-30 2.1E-34 190.9 8.9 79 19-97 145-223 (238)
22 PRK14154 heat shock protein Gr 100.0 1.5E-29 3.2E-34 186.8 8.9 78 18-95 129-207 (208)
23 PRK14160 heat shock protein Gr 100.0 1.6E-29 3.5E-34 186.9 8.9 78 18-96 134-211 (211)
24 PF01025 GrpE: GrpE; InterPro 100.0 5.1E-29 1.1E-33 175.1 8.2 79 18-96 87-165 (165)
25 PRK14157 heat shock protein Gr 100.0 1E-28 2.2E-33 184.2 9.0 77 21-97 149-225 (227)
26 cd00446 GrpE GrpE is the adeni 100.0 2.8E-28 6.1E-33 168.5 9.0 78 17-94 60-137 (137)
27 PRK14156 heat shock protein Gr 99.9 1.9E-27 4.2E-32 171.9 8.3 76 19-96 101-177 (177)
28 PRK14142 heat shock protein Gr 99.9 3.7E-27 8.1E-32 175.4 9.1 75 23-97 108-183 (223)
29 PRK14164 heat shock protein Gr 99.9 1.4E-26 3E-31 172.0 7.9 73 23-97 144-217 (218)
30 KOG3003|consensus 99.9 2.6E-26 5.6E-31 171.4 7.8 82 16-97 151-232 (236)
31 COG4224 Uncharacterized protei 63.0 19 0.00042 23.0 4.1 43 11-55 22-65 (77)
32 PF14814 UB2H: Bifunctional tr 51.4 36 0.00079 21.3 4.0 48 22-85 2-52 (85)
33 COG0309 HypE Hydrogenase matur 42.6 53 0.0012 26.4 4.5 40 6-45 88-127 (339)
34 COG1618 Predicted nucleotide k 42.4 21 0.00046 26.2 2.1 56 21-78 82-140 (179)
35 COG5440 Uncharacterized conser 39.3 1.1E+02 0.0023 22.2 5.2 46 27-79 5-50 (161)
36 PF06890 Phage_Mu_Gp45: Bacter 35.1 83 0.0018 22.5 4.2 53 34-95 31-83 (162)
37 KOG0762|consensus 34.0 51 0.0011 25.9 3.1 44 2-45 213-256 (311)
38 PF13730 HTH_36: Helix-turn-he 32.7 82 0.0018 17.3 3.2 31 8-41 24-54 (55)
39 KOG0257|consensus 32.4 76 0.0016 26.3 4.0 30 22-51 309-338 (420)
40 PF08823 PG_binding_2: Putativ 31.1 31 0.00067 21.5 1.3 35 27-62 16-50 (74)
41 COG4043 Preprotein translocase 30.7 26 0.00056 23.8 0.9 25 28-52 56-80 (111)
42 PF04566 RNA_pol_Rpb2_4: RNA p 30.3 46 0.001 20.0 1.9 14 80-93 48-61 (63)
43 COG1945 Pyruvoyl-dependent arg 27.4 95 0.0021 22.5 3.4 59 30-89 23-86 (163)
44 PF14357 DUF4404: Domain of un 27.1 64 0.0014 20.5 2.3 26 16-41 60-85 (85)
45 COG4226 HicB Predicted nucleas 27.0 52 0.0011 22.4 1.9 37 25-61 47-87 (111)
46 PF01849 NAC: NAC domain; Int 26.8 35 0.00077 19.9 1.0 17 30-46 2-18 (58)
47 PF04806 EspF: EspF protein re 26.5 38 0.00081 19.5 1.0 33 7-40 15-47 (47)
48 cd02412 30S_S3_KH K homology R 26.1 79 0.0017 20.7 2.7 40 3-46 15-56 (109)
49 PRK00407 hypothetical protein; 25.0 27 0.00059 24.1 0.3 13 47-59 99-111 (139)
50 PF00076 RRM_1: RNA recognitio 23.9 67 0.0015 17.7 1.8 60 28-88 11-70 (70)
51 COG3710 CadC DNA-binding winge 23.8 66 0.0014 22.4 2.0 21 70-90 90-110 (148)
52 PRK09004 FMN-binding protein M 23.8 1.2E+02 0.0025 20.7 3.3 27 22-48 95-121 (146)
53 PF05657 DUF806: Protein of un 23.0 2.5E+02 0.0055 19.1 4.9 38 25-62 78-115 (123)
54 PF11691 DUF3288: Protein of u 22.7 56 0.0012 21.5 1.4 32 13-44 29-63 (90)
55 COG1671 Uncharacterized protei 22.5 95 0.0021 22.2 2.6 25 31-55 76-100 (150)
56 cd07253 Glo_EDI_BRP_like_2 Thi 22.5 1.9E+02 0.0041 17.4 5.7 46 29-77 79-124 (125)
57 PF07927 YcfA: YcfA-like prote 21.8 69 0.0015 17.9 1.5 20 30-49 2-21 (56)
58 PF06230 DUF1009: Protein of u 21.7 92 0.002 23.3 2.6 54 3-58 28-82 (214)
59 PF07278 DUF1441: Protein of u 21.5 1.2E+02 0.0026 21.6 3.0 36 8-43 89-125 (152)
60 PF04914 DltD_C: DltD C-termin 21.4 1.7E+02 0.0036 20.1 3.7 36 22-57 71-106 (130)
61 PF10061 DUF2299: Uncharacteri 20.4 2.4E+02 0.0053 19.4 4.3 41 31-78 1-41 (138)
62 PF01471 PG_binding_1: Putativ 20.3 32 0.00069 19.3 -0.1 33 30-63 6-38 (57)
No 1
>PRK14147 heat shock protein GrpE; Provisional
Probab=99.97 E-value=2e-31 Score=191.79 Aligned_cols=80 Identities=31% Similarity=0.441 Sum_probs=77.1
Q ss_pred hhccHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCCcccceeeeEeecCCCCCCeeEEEEecCeeeCCEEeeeceEEeecC
Q psy2068 18 LTIDYSFVCRMKWKQANVFKRHGLEPINPLGEKFDPNFHEALFEQEVEGKEANTVVVVSKIGYKLYNRVIRPALVGISKS 97 (97)
Q Consensus 18 ~~~~~~G~~~i~~~l~~~L~~~Gv~~i~~~G~~FDP~~HeAv~~~~~~~~~~gtV~~V~~~GY~~~~rvLRpA~V~V~k~ 97 (97)
.+++.+|++||+++|.++|+++||++|+++|++|||++||||+++++++.++|+|++|+|+||+++|||||||+|+|+++
T Consensus 92 ~~~l~~Gv~mi~k~l~~~L~~~Gv~~i~~~G~~FDP~~HeAv~~~~~~~~~~g~Vv~v~qkGY~l~~RvLRpA~V~Vak~ 171 (172)
T PRK14147 92 PSPLRDGLELTYKQLLKVAADNGLTLLDPVGQPFNPEHHQAISQGEAEGVAPGHVVQVFQKGYLLNERLLRPALVVVAKQ 171 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCEEeCCCCCCCChHHhceeeeecCCCCCcCEEEEEeeCCcEeCCEeccCceEEeCCC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999984
No 2
>PRK14148 heat shock protein GrpE; Provisional
Probab=99.97 E-value=3e-31 Score=194.14 Aligned_cols=80 Identities=34% Similarity=0.431 Sum_probs=77.3
Q ss_pred hhccHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCCcccceeeeEeecCCCCCCeeEEEEecCeeeCCEEeeeceEEeecC
Q psy2068 18 LTIDYSFVCRMKWKQANVFKRHGLEPINPLGEKFDPNFHEALFEQEVEGKEANTVVVVSKIGYKLYNRVIRPALVGISKS 97 (97)
Q Consensus 18 ~~~~~~G~~~i~~~l~~~L~~~Gv~~i~~~G~~FDP~~HeAv~~~~~~~~~~gtV~~V~~~GY~~~~rvLRpA~V~V~k~ 97 (97)
.+++.+|++||+++|.++|+++||++|++.|++|||++||||+++++++.++|+|++|+|+||+++|||||||+|+|+|+
T Consensus 116 ~~~l~~Gv~mi~k~l~~vL~k~Gv~~I~~~G~~FDP~~HEAv~~~~~~~~~~gtVv~V~qkGY~l~dRVLRpA~V~Vak~ 195 (195)
T PRK14148 116 AIAMKEGIELTAKMLVDILKKNGVEELDPKGEKFDPNLHEAMAMIPNPEFEDNTIFDVFQKGYMLNGRIVRAAKVVIVKN 195 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCEEeCCCCCCCChhHhheeeeeCCCCCCcCEEEEEeeCCcEeCCEeeeccEEEeCCC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999985
No 3
>PRK14151 heat shock protein GrpE; Provisional
Probab=99.97 E-value=4.9e-31 Score=190.41 Aligned_cols=80 Identities=35% Similarity=0.460 Sum_probs=77.3
Q ss_pred hhccHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCCcccceeeeEeecCCCCCCeeEEEEecCeeeCCEEeeeceEEeecC
Q psy2068 18 LTIDYSFVCRMKWKQANVFKRHGLEPINPLGEKFDPNFHEALFEQEVEGKEANTVVVVSKIGYKLYNRVIRPALVGISKS 97 (97)
Q Consensus 18 ~~~~~~G~~~i~~~l~~~L~~~Gv~~i~~~G~~FDP~~HeAv~~~~~~~~~~gtV~~V~~~GY~~~~rvLRpA~V~V~k~ 97 (97)
.+++.+|++||+++|.++|+++||++|++.|++|||++||||+++++++.++|+|++|+|+||+++|||||||+|+|++.
T Consensus 97 ~~~~~~Gv~mi~k~l~~~L~k~Gv~~i~~~G~~FDP~~HEAv~~~~~~~~~~gtI~~v~qkGY~l~dRvLRpA~V~Vak~ 176 (176)
T PRK14151 97 IKPMREGVELTLKMFQDTLKRYQLEAVDPHGEPFNPEHHQAMAMQESADVEPNSVLKVFQKGYLLNGRLLRPAMVVVSKA 176 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCEEeCCCCCCCCHHHhhcceeeCCCCCCcCeEEEEeeCCcEECCEEecCcEEEecCC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999973
No 4
>COG0576 GrpE Molecular chaperone GrpE (heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=4.8e-31 Score=192.55 Aligned_cols=79 Identities=43% Similarity=0.576 Sum_probs=76.9
Q ss_pred hccHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCCcccceeeeEeecCCCCCCeeEEEEecCeeeCCEEeeeceEEeecC
Q psy2068 19 TIDYSFVCRMKWKQANVFKRHGLEPINPLGEKFDPNFHEALFEQEVEGKEANTVVVVSKIGYKLYNRVIRPALVGISKS 97 (97)
Q Consensus 19 ~~~~~G~~~i~~~l~~~L~~~Gv~~i~~~G~~FDP~~HeAv~~~~~~~~~~gtV~~V~~~GY~~~~rvLRpA~V~V~k~ 97 (97)
+++.+|++||+++|.++|+++||+.|++.|+.|||++||||+++++++.++|+|++|+|+||++||||||||+|+|+++
T Consensus 114 ~~l~~Gvem~~~~l~~~L~k~Gv~~i~~~Ge~FDP~~HeAv~~~~~~~~~~~tVv~v~qkGY~l~dRVLRpA~V~Vak~ 192 (193)
T COG0576 114 KALLEGVEMTLDQLLDALEKLGVEEIGPEGEKFDPNLHEAVQRVESEDVEPNTVVEVLQKGYKLNDRVLRPAMVKVAKK 192 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEeCCCCCCCCHHHhhheeeecCCCCCCCeEEEEeecCeeeCCEeccceEEEEecC
Confidence 6789999999999999999999999999999999999999999999999999999999999999999999999999974
No 5
>PRK14150 heat shock protein GrpE; Provisional
Probab=99.97 E-value=6.3e-31 Score=192.04 Aligned_cols=79 Identities=37% Similarity=0.534 Sum_probs=76.6
Q ss_pred hhccHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCCcccceeeeEeecCCCCCCeeEEEEecCeeeCCEEeeeceEEeec
Q psy2068 18 LTIDYSFVCRMKWKQANVFKRHGLEPINPLGEKFDPNFHEALFEQEVEGKEANTVVVVSKIGYKLYNRVIRPALVGISK 96 (97)
Q Consensus 18 ~~~~~~G~~~i~~~l~~~L~~~Gv~~i~~~G~~FDP~~HeAv~~~~~~~~~~gtV~~V~~~GY~~~~rvLRpA~V~V~k 96 (97)
.+++.+|++||+++|.++|+++||++|+++|++|||++||||+++++++.++|+|++|+|+||+++|||||||+|+|+|
T Consensus 115 ~~~~~~Gv~mi~~~l~~~L~~~Gv~~i~~~G~~FDP~~HeAv~~~~~~~~~~gtI~~v~q~GY~l~drvLRpA~V~Vsk 193 (193)
T PRK14150 115 LKALIEGVELTLKSLLDTVAKFGVEVVGPVGEPFNPEVHQAISMQESEDHEPNTVMMVMQKGYTLNGRLLRPAMVMVSK 193 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCeeeCCCCCCCCHhHcceeeeeCCCCCCcCEEEEEeeCCeEeCCEEecceEEEeCC
Confidence 4678999999999999999999999999999999999999999999999999999999999999999999999999986
No 6
>PRK10325 heat shock protein GrpE; Provisional
Probab=99.97 E-value=6.9e-31 Score=192.34 Aligned_cols=80 Identities=25% Similarity=0.357 Sum_probs=77.3
Q ss_pred hhccHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCCcccceeeeEeecCCCCCCeeEEEEecCeeeCCEEeeeceEEeecC
Q psy2068 18 LTIDYSFVCRMKWKQANVFKRHGLEPINPLGEKFDPNFHEALFEQEVEGKEANTVVVVSKIGYKLYNRVIRPALVGISKS 97 (97)
Q Consensus 18 ~~~~~~G~~~i~~~l~~~L~~~Gv~~i~~~G~~FDP~~HeAv~~~~~~~~~~gtV~~V~~~GY~~~~rvLRpA~V~V~k~ 97 (97)
.+++.+|++||+++|.++|+++||++|+++|++|||++||||+++++++.++|+|++|+|+||+++|||||||+|+|+++
T Consensus 116 ~~~l~~Gv~m~~~~l~~~L~~~Gv~~i~~~G~~FDP~~HEAv~~~~~~~~~~~~Vv~v~qkGY~l~drvlRpA~V~Vsk~ 195 (197)
T PRK10325 116 MSAMVEGIELTLKSMLDVVRKFGVEVIAETNVPLDPNVHQAIAMVESDDVAPGNVLGIMQKGYTLNGRTIRAAMVTVAKA 195 (197)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCcCeeeCCCCCCCChhHhceeeeeCCCCCCcCeEEEEeeCCcEeCCEeccCceEEeCCC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999974
No 7
>PRK14153 heat shock protein GrpE; Provisional
Probab=99.97 E-value=8.7e-31 Score=191.62 Aligned_cols=80 Identities=34% Similarity=0.501 Sum_probs=77.2
Q ss_pred hhccHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCCcccceeeeEeecCCCCCCeeEEEEecCeeeCCEEeeeceEEeecC
Q psy2068 18 LTIDYSFVCRMKWKQANVFKRHGLEPINPLGEKFDPNFHEALFEQEVEGKEANTVVVVSKIGYKLYNRVIRPALVGISKS 97 (97)
Q Consensus 18 ~~~~~~G~~~i~~~l~~~L~~~Gv~~i~~~G~~FDP~~HeAv~~~~~~~~~~gtV~~V~~~GY~~~~rvLRpA~V~V~k~ 97 (97)
.+++.+||+||+++|.++|+++||++|++.|++|||++||||+++++++.++|+|++|+|+||+++|||||||+|+|+++
T Consensus 109 ~~~l~~Gvemi~k~~~~vL~k~Gv~~I~~~G~~FDP~~HEAv~~~~~~~~~~gtVi~V~qkGY~l~dRVLRPA~V~Vak~ 188 (194)
T PRK14153 109 MNSIVEGIEMVSKQFFSILEKYGLERIECEGEEFDPHRHEAMMHVETSEVPDNTIVDVCKPGYALNSKVIRPAMVSVARN 188 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCeeeCCCCCCCChhHhceeeeeCCCCCCcCEEEEEeeCCcEeCCEEeeCcEEEECCC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999984
No 8
>PRK14161 heat shock protein GrpE; Provisional
Probab=99.97 E-value=8.2e-31 Score=189.57 Aligned_cols=80 Identities=33% Similarity=0.513 Sum_probs=76.9
Q ss_pred hhccHHHHHHHHHHHHHHHHhCCCeeeCC-CCCCCCcccceeeeEeecCCCCCCeeEEEEecCeeeCCEEeeeceEEeec
Q psy2068 18 LTIDYSFVCRMKWKQANVFKRHGLEPINP-LGEKFDPNFHEALFEQEVEGKEANTVVVVSKIGYKLYNRVIRPALVGISK 96 (97)
Q Consensus 18 ~~~~~~G~~~i~~~l~~~L~~~Gv~~i~~-~G~~FDP~~HeAv~~~~~~~~~~gtV~~V~~~GY~~~~rvLRpA~V~V~k 96 (97)
.+++.+|++||+++|.++|+++||++|++ +|++|||++||||+++++++.++|+|++|+|+||+++|||||||+|+|++
T Consensus 97 ~~~~~~Gv~mi~k~l~~vL~~~Gv~~I~~~~G~~FDP~~HEAv~~~~~~~~~~gtVi~v~q~GY~l~dRVLRpA~V~Vak 176 (178)
T PRK14161 97 VTNIIAGVQMTKDELDKVFHKHHIEEIKPEIGSMFDYNLHNAISQIEHPDHAPNSIITLMQSGYKIRDRLLRPATVQVVK 176 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCEEecCCCCCCCChHHhhhheeeCCCCCCcCEEEEEeeCCcEeCCEeecCceEEeCC
Confidence 46789999999999999999999999999 79999999999999999999999999999999999999999999999998
Q ss_pred C
Q psy2068 97 S 97 (97)
Q Consensus 97 ~ 97 (97)
+
T Consensus 177 ~ 177 (178)
T PRK14161 177 K 177 (178)
T ss_pred C
Confidence 4
No 9
>PRK14141 heat shock protein GrpE; Provisional
Probab=99.97 E-value=1.1e-30 Score=192.96 Aligned_cols=80 Identities=41% Similarity=0.654 Sum_probs=77.5
Q ss_pred hhhccHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCCcccceeeeEeecCCCCCCeeEEEEecCeeeCCEEeeeceEEeec
Q psy2068 17 QLTIDYSFVCRMKWKQANVFKRHGLEPINPLGEKFDPNFHEALFEQEVEGKEANTVVVVSKIGYKLYNRVIRPALVGISK 96 (97)
Q Consensus 17 ~~~~~~~G~~~i~~~l~~~L~~~Gv~~i~~~G~~FDP~~HeAv~~~~~~~~~~gtV~~V~~~GY~~~~rvLRpA~V~V~k 96 (97)
.++++.+|++||+++|.++|+++||++|++.|++|||++||||+++++++.++|+|++|+|+||+++|||||||+|+|++
T Consensus 112 ~~~~l~eGv~mi~k~l~~vLek~GV~~I~~~Ge~FDP~~HEAv~~~~~~~~~~gtVv~V~qkGY~l~dRVLRpA~V~Vsk 191 (209)
T PRK14141 112 GLKALIEGVEMTERAMLNALERHGVKKLDPEGQKFDPNFHQAMFEVPNPDVPNNTVVQVVQAGYTIGERVLRPAMVGVAK 191 (209)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCChHHhceeeeecCCCCCcCEEEEEeeCCcEeCCEeecccEEEECC
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999997
No 10
>PRK14140 heat shock protein GrpE; Provisional
Probab=99.97 E-value=1.1e-30 Score=190.71 Aligned_cols=79 Identities=37% Similarity=0.561 Sum_probs=76.6
Q ss_pred hhccHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCCcccceeeeEeecCCCCCCeeEEEEecCeeeCCEEeeeceEEeec
Q psy2068 18 LTIDYSFVCRMKWKQANVFKRHGLEPINPLGEKFDPNFHEALFEQEVEGKEANTVVVVSKIGYKLYNRVIRPALVGISK 96 (97)
Q Consensus 18 ~~~~~~G~~~i~~~l~~~L~~~Gv~~i~~~G~~FDP~~HeAv~~~~~~~~~~gtV~~V~~~GY~~~~rvLRpA~V~V~k 96 (97)
.+++.+|++||+++|.++|+++||++|++.|++|||++||||+++++++.++|||++|+|+||+++|||||||+|+|++
T Consensus 113 ~~~i~~Gv~mi~k~l~~~L~k~GV~~i~~~Ge~FDP~~HEAv~~~~~~~~~~gtVv~V~qkGY~l~dRVLRpA~V~Vak 191 (191)
T PRK14140 113 TKSLLKGVEMVHRQLLEALKKEGVEVIEAVGEQFDPNLHQAVMQDEDEDFESNEVVEELQKGYKLKDRVIRPSMVKVNQ 191 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCEeeCCCCCCCChHHhccceeeCCCCCCcCeEEEEeeCCeEeCCEEecCcEEEeCC
Confidence 4778999999999999999999999999999999999999999999999999999999999999999999999999986
No 11
>PRK14145 heat shock protein GrpE; Provisional
Probab=99.97 E-value=2.6e-30 Score=189.38 Aligned_cols=79 Identities=32% Similarity=0.523 Sum_probs=76.0
Q ss_pred hhccHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCCcccceeeeEeecCCCCCCeeEEEEecCeeeCCEEeeeceEEeec
Q psy2068 18 LTIDYSFVCRMKWKQANVFKRHGLEPINPLGEKFDPNFHEALFEQEVEGKEANTVVVVSKIGYKLYNRVIRPALVGISK 96 (97)
Q Consensus 18 ~~~~~~G~~~i~~~l~~~L~~~Gv~~i~~~G~~FDP~~HeAv~~~~~~~~~~gtV~~V~~~GY~~~~rvLRpA~V~V~k 96 (97)
.+++.+|++||+++|.++|+++||++|++.|++|||++|||++++++++.++|+|++|+|+||+++|||||||+|+|++
T Consensus 118 ~~~l~~Gv~mi~k~l~~vL~k~GVe~I~~~Ge~FDP~~HEAv~~~~~~~~~~gtVv~V~qkGY~l~dRVLRPA~V~Vak 196 (196)
T PRK14145 118 YNSLKEGIELIYRQFKKILDKFGVKEIEAEGQIFDPYKHHAVMQEEVEGKQPNEIIEVFQKGYYLKDKVIRPSLVKVAK 196 (196)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCEEeCCCCCCCCchhhheeeeeCCCCCCcCEEEEEeeCCcEeCCEeeccceEEeCC
Confidence 4567899999999999999999999999999999999999999999999999999999999999999999999999986
No 12
>PRK14155 heat shock protein GrpE; Provisional
Probab=99.97 E-value=2.8e-30 Score=190.61 Aligned_cols=79 Identities=34% Similarity=0.562 Sum_probs=76.7
Q ss_pred hhccHHHHHHHHHHHHHHHHhCCCeeeCC-CCCCCCcccceeeeEeecCCCCCCeeEEEEecCeeeCCEEeeeceEEeec
Q psy2068 18 LTIDYSFVCRMKWKQANVFKRHGLEPINP-LGEKFDPNFHEALFEQEVEGKEANTVVVVSKIGYKLYNRVIRPALVGISK 96 (97)
Q Consensus 18 ~~~~~~G~~~i~~~l~~~L~~~Gv~~i~~-~G~~FDP~~HeAv~~~~~~~~~~gtV~~V~~~GY~~~~rvLRpA~V~V~k 96 (97)
.+.+.+|++||+++|.++|+++||++|++ +|++|||++||||+++++++.++|+|++|+|+||+++|||||||+|+|++
T Consensus 92 ~~~i~~Gvemi~k~~~~~L~k~GV~~I~~~~G~~FDP~~HEAv~~~~~~~~~~gtVi~V~qkGY~l~dRVLRPA~V~Vak 171 (208)
T PRK14155 92 VKNFIIGVEMTEKELLGAFERNGLKKIDPAKGDKFDPHLHQAMMEQPSTEVAAGGVLQVMQAGYELMGRLVRPAMVAVAA 171 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCceecCCCCCCCChhHhceeeeecCCCCCcCeEEEEeeCCeEeCCEeeccceEEECC
Confidence 57789999999999999999999999999 89999999999999999999999999999999999999999999999998
No 13
>PRK14158 heat shock protein GrpE; Provisional
Probab=99.97 E-value=2.2e-30 Score=189.52 Aligned_cols=79 Identities=30% Similarity=0.521 Sum_probs=76.3
Q ss_pred hhccHHHHHHHHHHHHHHHHhCCCeeeCC-CCCCCCcccceeeeEeecCCCCCCeeEEEEecCeeeCCEEeeeceEEeec
Q psy2068 18 LTIDYSFVCRMKWKQANVFKRHGLEPINP-LGEKFDPNFHEALFEQEVEGKEANTVVVVSKIGYKLYNRVIRPALVGISK 96 (97)
Q Consensus 18 ~~~~~~G~~~i~~~l~~~L~~~Gv~~i~~-~G~~FDP~~HeAv~~~~~~~~~~gtV~~V~~~GY~~~~rvLRpA~V~V~k 96 (97)
.+++.+|++||+++|.++|+++||++|++ +|++|||++||||+++++++.++|+|++|+|+||+++|||||||+|+|+|
T Consensus 115 ~~~i~~Gv~mi~k~l~~vLek~Gv~~I~~~~G~~FDP~~HEAv~~~~~~~~~~gtVv~v~qkGY~l~dRVLRpA~V~VsK 194 (194)
T PRK14158 115 MSAIIEGIRMTLSMLLSTLKKFGVTPVEAEKGTPFDPAYHQAMCQVESAEQEPNTVVAVFQKGYLLNERLLRPAMVSVAT 194 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCEEecCCCCCCCChHHhhhheeecCCCCCcCEEEEEeeCCcEeCCEEeecceeEeCC
Confidence 46789999999999999999999999998 79999999999999999999999999999999999999999999999986
No 14
>PRK14144 heat shock protein GrpE; Provisional
Probab=99.96 E-value=3.9e-30 Score=188.78 Aligned_cols=79 Identities=35% Similarity=0.470 Sum_probs=76.3
Q ss_pred hccHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCCcccceeeeEeecCCCCCCeeEEEEecCeeeCCEEeeeceEEeecC
Q psy2068 19 TIDYSFVCRMKWKQANVFKRHGLEPINPLGEKFDPNFHEALFEQEVEGKEANTVVVVSKIGYKLYNRVIRPALVGISKS 97 (97)
Q Consensus 19 ~~~~~G~~~i~~~l~~~L~~~Gv~~i~~~G~~FDP~~HeAv~~~~~~~~~~gtV~~V~~~GY~~~~rvLRpA~V~V~k~ 97 (97)
.++.+|++||+++|.++|+++||++|++.|++|||++||||+++++++.++|+|++|+|+||+++|||||||+|+|++.
T Consensus 121 ~~i~~Gv~mi~k~l~~~L~k~GV~~I~~~G~~FDP~~HEAv~~~~~~~~~~gtVv~V~qkGY~l~dRVLRpA~V~Vskk 199 (199)
T PRK14144 121 PSMHEGLELTMKLFLDALQKFDVEQIDPLGQTFDPQQHEAMSMQPAPGAPPNSVITVFQKGYKLSDRVIRPARVIVSTK 199 (199)
T ss_pred hHHHHHHHHHHHHHHHHHHHCCCEEeCCCCCCCChhHhceeeeeCCCCCCcCeEEEEeeCCcEECCEEecccEEEecCC
Confidence 4678999999999999999999999999999999999999999999999999999999999999999999999999974
No 15
>PRK14162 heat shock protein GrpE; Provisional
Probab=99.96 E-value=3.5e-30 Score=188.42 Aligned_cols=79 Identities=30% Similarity=0.424 Sum_probs=75.2
Q ss_pred hhccHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCCcccceeeeEeecC-CCCCCeeEEEEecCeeeCCEEeeeceEEeec
Q psy2068 18 LTIDYSFVCRMKWKQANVFKRHGLEPINPLGEKFDPNFHEALFEQEVE-GKEANTVVVVSKIGYKLYNRVIRPALVGISK 96 (97)
Q Consensus 18 ~~~~~~G~~~i~~~l~~~L~~~Gv~~i~~~G~~FDP~~HeAv~~~~~~-~~~~gtV~~V~~~GY~~~~rvLRpA~V~V~k 96 (97)
.+.+.+|++||+++|.++|+++||++|+++|++|||++||||++++++ +.++|+|++|+|+||+++|||||||+|+|++
T Consensus 115 ~~~l~~Gvemi~k~l~~vL~~~GV~~I~~~G~~FDP~~HEAv~~~~~~~~~~~gtVv~v~qkGY~l~dRVLRpA~V~Vak 194 (194)
T PRK14162 115 AKQLKKGVQMTLDHLVKALKDHGVTEIKADGEKFDPTLHQAVQTVAAENDDQKDHVVQVLQKGYQYKDRTLRPAMVVVAQ 194 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCEEeCCCCCCCChhHhhhheeecCCCCCCcCEEEEEeeCCcEeCCEeeecceEEeCC
Confidence 467899999999999999999999999999999999999999999975 6789999999999999999999999999986
No 16
>PRK14139 heat shock protein GrpE; Provisional
Probab=99.96 E-value=3.9e-30 Score=187.03 Aligned_cols=79 Identities=37% Similarity=0.503 Sum_probs=75.1
Q ss_pred hhccHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCCcccceeeeEeecCCCCCCeeEEEEecCeeeCCEEeeeceEEeecC
Q psy2068 18 LTIDYSFVCRMKWKQANVFKRHGLEPINPLGEKFDPNFHEALFEQEVEGKEANTVVVVSKIGYKLYNRVIRPALVGISKS 97 (97)
Q Consensus 18 ~~~~~~G~~~i~~~l~~~L~~~Gv~~i~~~G~~FDP~~HeAv~~~~~~~~~~gtV~~V~~~GY~~~~rvLRpA~V~V~k~ 97 (97)
.+.+.+|++||+++|.++|+++||++|+++|++|||++||||+++++ +.++|+|++|+|+||+++|||||||+|+|++.
T Consensus 106 ~~~l~~Gv~mi~k~l~~vL~k~Gv~~I~~~G~~FDP~~HEAv~~~~~-~~~~gtVi~V~qkGY~l~dRVLRPA~V~Vak~ 184 (185)
T PRK14139 106 LEKLREGVELTLKQLTSAFEKGRVVEINPVGEKFDPHQHQAISMVPA-EQEPNTVVAVLQKGYTIADRVLRPALVTVAAP 184 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCceeCCCCCCCChHHhheeeeecC-CCCcCEEEEEeeCCcEeCCEeccCceEEeCCC
Confidence 46689999999999999999999999999999999999999999998 56899999999999999999999999999974
No 17
>PRK14159 heat shock protein GrpE; Provisional
Probab=99.96 E-value=3e-30 Score=186.41 Aligned_cols=77 Identities=34% Similarity=0.467 Sum_probs=74.4
Q ss_pred hccHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCCcccceeeeEeecCCCCCCeeEEEEecCeeeCCEEeeeceEEeec
Q psy2068 19 TIDYSFVCRMKWKQANVFKRHGLEPINPLGEKFDPNFHEALFEQEVEGKEANTVVVVSKIGYKLYNRVIRPALVGISK 96 (97)
Q Consensus 19 ~~~~~G~~~i~~~l~~~L~~~Gv~~i~~~G~~FDP~~HeAv~~~~~~~~~~gtV~~V~~~GY~~~~rvLRpA~V~V~k 96 (97)
+++.+|++||+++|.++|+++||++|++.| +|||++||||+++++++.++|+|++|+|+||+++|||||||+|+|++
T Consensus 100 ~~l~~Gv~mi~k~l~~vL~k~Gv~~I~~~G-~FDP~~HEAv~~~~~~~~~~gtVv~v~qkGY~l~dRVLRpA~V~Vak 176 (176)
T PRK14159 100 LKIKEGVQNTLDLFLKKLEKHGVALIKEEK-EFDPNLHEAMFHVDSENHQSGEVVQVLQKGYKIADRVIRPTKVSVAK 176 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHCcCEecCCCC-CCChHHhhhhheeCCCCCCcCeEEEEeeCCcEeCCEeeecceeEeCC
Confidence 568999999999999999999999999999 69999999999999999999999999999999999999999999986
No 18
>PRK14163 heat shock protein GrpE; Provisional
Probab=99.96 E-value=5.2e-30 Score=189.84 Aligned_cols=78 Identities=27% Similarity=0.381 Sum_probs=75.8
Q ss_pred ccHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCCcccceeeeEeecCCCCCCeeEEEEecCeeeCCEEeeeceEEeecC
Q psy2068 20 IDYSFVCRMKWKQANVFKRHGLEPINPLGEKFDPNFHEALFEQEVEGKEANTVVVVSKIGYKLYNRVIRPALVGISKS 97 (97)
Q Consensus 20 ~~~~G~~~i~~~l~~~L~~~Gv~~i~~~G~~FDP~~HeAv~~~~~~~~~~gtV~~V~~~GY~~~~rvLRpA~V~V~k~ 97 (97)
.+..|++||+++|.++|+++||++|+++|++|||++||||+++++++.++|+|++|+|+||+++|||||||+|+|+++
T Consensus 111 ~l~~Gv~mi~k~l~~~L~k~Gv~~I~~~G~~FDP~~HEAv~~~~~~~~~~gtVv~v~qkGY~l~~RVLRPA~V~Vsk~ 188 (214)
T PRK14163 111 ELVGGFKSVAESLETTVAKLGLQQFGKEGEPFDPTIHEALMHSYAPDVTETTCVAILQPGYRIGERTIRPARVAVAEP 188 (214)
T ss_pred hHHHHHHHHHHHHHHHHHHCCCEEeCCCCCCCChhHhceeeeecCCCCCcCEEEEEeeCCcCcCCEeccCceEEECCC
Confidence 578999999999999999999999999999999999999999999999999999999999999999999999999984
No 19
>PRK14146 heat shock protein GrpE; Provisional
Probab=99.96 E-value=6.4e-30 Score=189.44 Aligned_cols=80 Identities=30% Similarity=0.314 Sum_probs=76.8
Q ss_pred hhccHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCCcccceeeeEeecCCCCCCeeEEEEecCeeeCC----EEeeeceEE
Q psy2068 18 LTIDYSFVCRMKWKQANVFKRHGLEPINPLGEKFDPNFHEALFEQEVEGKEANTVVVVSKIGYKLYN----RVIRPALVG 93 (97)
Q Consensus 18 ~~~~~~G~~~i~~~l~~~L~~~Gv~~i~~~G~~FDP~~HeAv~~~~~~~~~~gtV~~V~~~GY~~~~----rvLRpA~V~ 93 (97)
.+++.+|++||+++|.++|+++||++|+++|++|||++||||+++++++.++|+|++|+|+||+++| ||||||+|+
T Consensus 130 ~~~l~~Gv~mi~k~l~~~L~k~Gv~~i~~~G~~FDP~~HeAv~~~~~~~~~~g~Vv~v~qkGY~l~~r~~~RvLRpA~V~ 209 (215)
T PRK14146 130 LKPFVEGVKMILKEFYSVLEKSNVIRFDPKGEPFDPMSMEALSSEEGDQYSEETVIDVYQAGYYYKENEDKFTLRPARVR 209 (215)
T ss_pred hhHHHHHHHHHHHHHHHHHHHCcCeeeCCCCCCCChhHhceeeeecCCCCCcCEEEEEeeCCeEeCCccCCeeccCceEE
Confidence 4778999999999999999999999999999999999999999999999999999999999999999 699999999
Q ss_pred eecC
Q psy2068 94 ISKS 97 (97)
Q Consensus 94 V~k~ 97 (97)
|+++
T Consensus 210 Vak~ 213 (215)
T PRK14146 210 IGKP 213 (215)
T ss_pred eCCC
Confidence 9974
No 20
>PRK14149 heat shock protein GrpE; Provisional
Probab=99.96 E-value=1.2e-29 Score=185.29 Aligned_cols=79 Identities=39% Similarity=0.547 Sum_probs=75.5
Q ss_pred hhccHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCCcccceeeeEeecCCCCCCeeEEEEecCeeeCCEEeeeceEEeecC
Q psy2068 18 LTIDYSFVCRMKWKQANVFKRHGLEPINPLGEKFDPNFHEALFEQEVEGKEANTVVVVSKIGYKLYNRVIRPALVGISKS 97 (97)
Q Consensus 18 ~~~~~~G~~~i~~~l~~~L~~~Gv~~i~~~G~~FDP~~HeAv~~~~~~~~~~gtV~~V~~~GY~~~~rvLRpA~V~V~k~ 97 (97)
.+++.+|++||+++|.++|+++||++|++.| +|||++||||+++++++.++|+|++|+|+||+++|||||||+|+|+++
T Consensus 112 ~~~l~~Gv~mi~k~l~~vL~k~GV~~I~~~G-~FDP~~HEAv~~v~~~~~~~gtVv~V~QkGY~l~dRVLRPA~V~Vak~ 190 (191)
T PRK14149 112 ESALTKGLELTMEKLHEVLARHGIEGIECLE-EFDPNFHNAIMQVKSEEKENGKIVQVLQQGYKYKGRVLRPAMVSIAKN 190 (191)
T ss_pred hHHHHHHHHHHHHHHHHHHHHCCCEEeCCCC-CCChHHhheeeeecCCCCCcCEEEEEeeCCcEeCCEEeeccEEEeCCC
Confidence 4678999999999999999999999999998 599999999999999999999999999999999999999999999984
No 21
>PRK14143 heat shock protein GrpE; Provisional
Probab=99.96 E-value=9.6e-30 Score=190.89 Aligned_cols=79 Identities=29% Similarity=0.468 Sum_probs=76.4
Q ss_pred hccHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCCcccceeeeEeecCCCCCCeeEEEEecCeeeCCEEeeeceEEeecC
Q psy2068 19 TIDYSFVCRMKWKQANVFKRHGLEPINPLGEKFDPNFHEALFEQEVEGKEANTVVVVSKIGYKLYNRVIRPALVGISKS 97 (97)
Q Consensus 19 ~~~~~G~~~i~~~l~~~L~~~Gv~~i~~~G~~FDP~~HeAv~~~~~~~~~~gtV~~V~~~GY~~~~rvLRpA~V~V~k~ 97 (97)
..+.+|++||+++|.++|+++||++|++.|++|||++||||+++++++.++|+|++|+|+||+++|||||||+|+|+++
T Consensus 145 ~~l~~Gve~i~k~l~~~L~k~GV~~i~~~G~~FDP~~HEAv~~~~~~~~~~gtVv~v~qkGY~l~~RVLRpA~V~Vsk~ 223 (238)
T PRK14143 145 QALHRSYQGLYKQLVDVLKRLGVSPMRVVGQEFDPNLHEAVLREPSDEHPEDVVLEELQRGYHLGGRVLRHAMVKVSMG 223 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCeeeCCCCCCCChHHhheeeeecCCCCCcCeEEEEeeCCceeCCEecccceEEECCC
Confidence 5678999999999999999999999999999999999999999999999999999999999999999999999999974
No 22
>PRK14154 heat shock protein GrpE; Provisional
Probab=99.96 E-value=1.5e-29 Score=186.77 Aligned_cols=78 Identities=32% Similarity=0.462 Sum_probs=75.4
Q ss_pred hhccHHHHHHHHHHHHHHHHhCCCeeeCC-CCCCCCcccceeeeEeecCCCCCCeeEEEEecCeeeCCEEeeeceEEee
Q psy2068 18 LTIDYSFVCRMKWKQANVFKRHGLEPINP-LGEKFDPNFHEALFEQEVEGKEANTVVVVSKIGYKLYNRVIRPALVGIS 95 (97)
Q Consensus 18 ~~~~~~G~~~i~~~l~~~L~~~Gv~~i~~-~G~~FDP~~HeAv~~~~~~~~~~gtV~~V~~~GY~~~~rvLRpA~V~V~ 95 (97)
.+++.+|++||+++|.++|+++||++|++ +|++|||++||||+++++++.++|||++|+|+||+++|||||||+|+|+
T Consensus 129 ~~~l~eGvemi~k~l~~vL~k~GVe~I~~~~G~~FDP~~HEAv~~~~~~~~~~gtVveV~qkGY~l~dRVLRPA~V~Va 207 (208)
T PRK14154 129 VKSMRDGMSLTLDLLHNTLAKHGVQVINPNPGDPFDPALHEAMSVQAVPDAKPDTIIQVLQKGYQLNGRVLRAARVIVA 207 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCEEecCCCCCCCChhHhheeeeeCCCCCCcCEEEEEeeCCcEeCCEEecceEEEeC
Confidence 47789999999999999999999999999 6999999999999999999999999999999999999999999999997
No 23
>PRK14160 heat shock protein GrpE; Provisional
Probab=99.96 E-value=1.6e-29 Score=186.89 Aligned_cols=78 Identities=28% Similarity=0.369 Sum_probs=74.7
Q ss_pred hhccHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCCcccceeeeEeecCCCCCCeeEEEEecCeeeCCEEeeeceEEeec
Q psy2068 18 LTIDYSFVCRMKWKQANVFKRHGLEPINPLGEKFDPNFHEALFEQEVEGKEANTVVVVSKIGYKLYNRVIRPALVGISK 96 (97)
Q Consensus 18 ~~~~~~G~~~i~~~l~~~L~~~Gv~~i~~~G~~FDP~~HeAv~~~~~~~~~~gtV~~V~~~GY~~~~rvLRpA~V~V~k 96 (97)
.+.+.+|++||+++|.++|+++||++|++.| +|||++|+||+++++++.++|+|++|+|+||+++|||||||+|+|++
T Consensus 134 ~~~l~~Gv~mi~kql~~vL~k~GVe~I~~~G-~FDP~~HEAv~~~~~~e~~~gtVveV~qkGY~l~dRVLRpA~V~Va~ 211 (211)
T PRK14160 134 VEDLKKGIEMTVKQFKTSLEKLGVEEISTEG-EFDPNLHNAVMHVEDENYGENEIVEVFQKGYKRGDKVIRYSMVKVAN 211 (211)
T ss_pred hhHHHHHHHHHHHHHHHHHHHCCCEEeCCCC-CCChHHhceeeeeCCCCCCcCeEEEEeeCCcEeCCEeeecceEEeCC
Confidence 3568999999999999999999999999999 89999999999999999999999999999999999999999999985
No 24
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=99.96 E-value=5.1e-29 Score=175.07 Aligned_cols=79 Identities=37% Similarity=0.522 Sum_probs=69.5
Q ss_pred hhccHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCCcccceeeeEeecCCCCCCeeEEEEecCeeeCCEEeeeceEEeec
Q psy2068 18 LTIDYSFVCRMKWKQANVFKRHGLEPINPLGEKFDPNFHEALFEQEVEGKEANTVVVVSKIGYKLYNRVIRPALVGISK 96 (97)
Q Consensus 18 ~~~~~~G~~~i~~~l~~~L~~~Gv~~i~~~G~~FDP~~HeAv~~~~~~~~~~gtV~~V~~~GY~~~~rvLRpA~V~V~k 96 (97)
.+.+.+|++|+.++|.++|+++||++|++.|++|||++|+|++++++++.++|+|++|+++||+++|||||||+|+|+|
T Consensus 87 ~~~~~~g~~~~~~~l~~~L~~~Gv~~i~~~G~~FDp~~heav~~~~~~~~~~~~I~~v~~~GY~~~~rvlRpA~V~V~K 165 (165)
T PF01025_consen 87 EESLLEGLEMILKQLEDILEKNGVEEIEPVGEPFDPNLHEAVETVPDPDKEPGTIVEVVRPGYRLGGRVLRPAEVVVSK 165 (165)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTTEEEE--TSSB--TTTEEEEEEECSSSS-CTBEEEECC-EEEETTEEEE-EEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCEecCCCCCCCCHHHheeheecCcCCCCcCeEEEEEecCEEECCEEeeeeEEEecC
Confidence 4577999999999999999999999999999999999999999999999999999999999999999999999999997
No 25
>PRK14157 heat shock protein GrpE; Provisional
Probab=99.95 E-value=1e-28 Score=184.17 Aligned_cols=77 Identities=30% Similarity=0.434 Sum_probs=74.1
Q ss_pred cHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCCcccceeeeEeecCCCCCCeeEEEEecCeeeCCEEeeeceEEeecC
Q psy2068 21 DYSFVCRMKWKQANVFKRHGLEPINPLGEKFDPNFHEALFEQEVEGKEANTVVVVSKIGYKLYNRVIRPALVGISKS 97 (97)
Q Consensus 21 ~~~G~~~i~~~l~~~L~~~Gv~~i~~~G~~FDP~~HeAv~~~~~~~~~~gtV~~V~~~GY~~~~rvLRpA~V~V~k~ 97 (97)
+.+|+++|+++|.++|+++||++|++.|++|||++||||+++++++.++|+|++|+|+||+++|||||||+|+|++.
T Consensus 149 ~~~~~~~i~k~l~~vL~k~GVe~I~~~Ge~FDP~~HEAV~~~~~~~~~~gtVi~V~QkGY~l~dRVLRPA~V~Vak~ 225 (227)
T PRK14157 149 MDDSFKAVAAKIDKAFEKFGVEKFGEKGEDFDPTKHDAILHKPDPDAEKETVDTVVEAGYRIGDRVIRAARVVVASP 225 (227)
T ss_pred cchHHHHHHHHHHHHHHHCCCEEeCCCCCCCChhhhceeeeecCCCCCcCEEEEEeeCCceeCCEeccCceEEeCCC
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999973
No 26
>cd00446 GrpE GrpE is the adenine nucleotide exchange factor of DnaK (Hsp70)-type ATPases. The GrpE dimer binds to the ATPase domain of Hsp70 catalyzing the dissociation of ADP, which enables rebinding of ATP, one step in the Hsp70 reaction cycle in protein folding. In eukaryotes, only the mitochondrial Hsp70, not the cytosolic form, is GrpE dependent.
Probab=99.95 E-value=2.8e-28 Score=168.49 Aligned_cols=78 Identities=41% Similarity=0.570 Sum_probs=74.9
Q ss_pred hhhccHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCCcccceeeeEeecCCCCCCeeEEEEecCeeeCCEEeeeceEEe
Q psy2068 17 QLTIDYSFVCRMKWKQANVFKRHGLEPINPLGEKFDPNFHEALFEQEVEGKEANTVVVVSKIGYKLYNRVIRPALVGI 94 (97)
Q Consensus 17 ~~~~~~~G~~~i~~~l~~~L~~~Gv~~i~~~G~~FDP~~HeAv~~~~~~~~~~gtV~~V~~~GY~~~~rvLRpA~V~V 94 (97)
..+.+.+|++|+.++|.++|+++||++|++.|++|||++|||++++++++.++|+|++|+|+||+++|||||||+|+|
T Consensus 60 ~~~~~~~g~~~i~~~l~~~L~~~Gv~~i~~~g~~FDp~~Heav~~~~~~~~~~~~I~~v~~~GY~~~~rvlRpA~V~V 137 (137)
T cd00446 60 ELKNLVEGVEMTLKQLLDVLEKHGVEKIEPEGEPFDPNLHEAVMQVPSPDVEPGTVVEVLQKGYKLGDRVLRPAMVVV 137 (137)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCHHHheeeeeecCCCCCcCEEEEEeecCeEECCEEecccEeEC
Confidence 446789999999999999999999999999999999999999999999989999999999999999999999999987
No 27
>PRK14156 heat shock protein GrpE; Provisional
Probab=99.94 E-value=1.9e-27 Score=171.92 Aligned_cols=76 Identities=25% Similarity=0.326 Sum_probs=70.9
Q ss_pred hccHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCCcccceeeeEeecC-CCCCCeeEEEEecCeeeCCEEeeeceEEeec
Q psy2068 19 TIDYSFVCRMKWKQANVFKRHGLEPINPLGEKFDPNFHEALFEQEVE-GKEANTVVVVSKIGYKLYNRVIRPALVGISK 96 (97)
Q Consensus 19 ~~~~~G~~~i~~~l~~~L~~~Gv~~i~~~G~~FDP~~HeAv~~~~~~-~~~~gtV~~V~~~GY~~~~rvLRpA~V~V~k 96 (97)
..+.+|++||+++|.++|+++||++|++. +|||++|||+++++++ +.++|+|++|+|+||+++|||||||+|+|++
T Consensus 101 ~~l~~Gv~mi~k~l~~~L~~~GV~~i~~~--~FDP~~HEAv~~~~~~~~~~~gtVv~V~qkGY~l~dRVLRpA~V~Va~ 177 (177)
T PRK14156 101 DDVKKGLEMVQESLIQALKEEGVEEVAVD--SFDHNLHMAVQTLPADDEHPADSIAQVFQKGYKLHERLLRPAMVVVYN 177 (177)
T ss_pred hhHHHHHHHHHHHHHHHHHHCCCeecCCC--CCChhHhhcceeecCCCCCCcCEEEEEeeCCcEeCCEEeecceeEeCC
Confidence 35689999999999999999999999985 9999999999999864 5799999999999999999999999999985
No 28
>PRK14142 heat shock protein GrpE; Provisional
Probab=99.94 E-value=3.7e-27 Score=175.36 Aligned_cols=75 Identities=29% Similarity=0.430 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHHHHhCCCeeeCCCCCCCCcccceeeeEeecCCCC-CCeeEEEEecCeeeCCEEeeeceEEeecC
Q psy2068 23 SFVCRMKWKQANVFKRHGLEPINPLGEKFDPNFHEALFEQEVEGKE-ANTVVVVSKIGYKLYNRVIRPALVGISKS 97 (97)
Q Consensus 23 ~G~~~i~~~l~~~L~~~Gv~~i~~~G~~FDP~~HeAv~~~~~~~~~-~gtV~~V~~~GY~~~~rvLRpA~V~V~k~ 97 (97)
.+++||+++|.++|+++||++|+++|++|||++||||+++++++.+ .++|++|+|+||+++|||||||+|+|+|+
T Consensus 108 ~~v~~I~kqL~~iLek~GVe~I~~~Ge~FDP~~HEAv~~ve~~e~~~~~tVveV~QkGYkL~dRVLRPA~V~Vsk~ 183 (223)
T PRK14142 108 GPLKSVADKLDSALTGLGLVAFGAEGEDFDPVLHEAVQHEGDGGQGSKPVIGTVMRQGYQLGEQVLRHALVGVVDT 183 (223)
T ss_pred HHHHHHHHHHHHHHHHCCCEEeCCCCCCCChhhhceeeeecCCCCCCCCEEEEEecCCcEeCCEeccCceEEECCC
Confidence 4689999999999999999999999999999999999999988754 67999999999999999999999999984
No 29
>PRK14164 heat shock protein GrpE; Provisional
Probab=99.93 E-value=1.4e-26 Score=172.00 Aligned_cols=73 Identities=27% Similarity=0.393 Sum_probs=68.4
Q ss_pred HH-HHHHHHHHHHHHHhCCCeeeCCCCCCCCcccceeeeEeecCCCCCCeeEEEEecCeeeCCEEeeeceEEeecC
Q psy2068 23 SF-VCRMKWKQANVFKRHGLEPINPLGEKFDPNFHEALFEQEVEGKEANTVVVVSKIGYKLYNRVIRPALVGISKS 97 (97)
Q Consensus 23 ~G-~~~i~~~l~~~L~~~Gv~~i~~~G~~FDP~~HeAv~~~~~~~~~~gtV~~V~~~GY~~~~rvLRpA~V~V~k~ 97 (97)
+| +++++++|.++|+++||++|+++|++|||++||||+++++++ .++|++|+|+||++||||||||+|+|++.
T Consensus 144 ~g~l~~i~~~l~~vL~k~Gve~I~~~Ge~FDP~~HEAV~~~~~~~--~~~V~~V~qkGY~l~dRVLRPA~V~Vak~ 217 (218)
T PRK14164 144 EGPLKAFSDKLTNVLAGLKVEKFGEEGDAFDPEIHEAVQDLSSGD--EKVLGTVLRKGYRMGDRVLRTAMVIIADP 217 (218)
T ss_pred ccHHHHHHHHHHHHHHHCCCEEeCCCCCCCChhHhheeeeecCCC--CCEeeEEeeCCcEECCEeccCceEEeCCC
Confidence 45 899999999999999999999999999999999999998764 68999999999999999999999999973
No 30
>KOG3003|consensus
Probab=99.93 E-value=2.6e-26 Score=171.39 Aligned_cols=82 Identities=46% Similarity=0.732 Sum_probs=77.8
Q ss_pred HhhhccHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCCcccceeeeEeecCCCCCCeeEEEEecCeeeCCEEeeeceEEee
Q psy2068 16 AQLTIDYSFVCRMKWKQANVFKRHGLEPINPLGEKFDPNFHEALFEQEVEGKEANTVVVVSKIGYKLYNRVIRPALVGIS 95 (97)
Q Consensus 16 ~~~~~~~~G~~~i~~~l~~~L~~~Gv~~i~~~G~~FDP~~HeAv~~~~~~~~~~gtV~~V~~~GY~~~~rvLRpA~V~V~ 95 (97)
.+++-.++|+.|++.+|.++|.++|++..+|+|++|||+.|||+.++|+...++|||..|.+.||++|||+||||+|.|+
T Consensus 151 ~~L~~l~eGl~mte~ql~~vf~KhGLekldPigekFDPn~HEAvfq~p~~~k~pgtV~~v~k~Gy~L~~R~IRPA~VgV~ 230 (236)
T KOG3003|consen 151 KDLKDLFEGLSMTEAQLKEVFAKHGLEKLDPIGEKFDPNEHEAVFQVPDAAKEPGTVALVTKKGYKLNGRVIRPAMVGVV 230 (236)
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHcCceecCCCCCCCCcchhheeEeccccCCCCCeEEEEeccCcccCCeeechhheeee
Confidence 45566699999999999999999999999999999999999999999988899999999999999999999999999999
Q ss_pred cC
Q psy2068 96 KS 97 (97)
Q Consensus 96 k~ 97 (97)
++
T Consensus 231 ~~ 232 (236)
T KOG3003|consen 231 KG 232 (236)
T ss_pred cC
Confidence 75
No 31
>COG4224 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=62.97 E-value=19 Score=22.98 Aligned_cols=43 Identities=12% Similarity=0.220 Sum_probs=30.6
Q ss_pred chHHHHhhhccH-HHHHHHHHHHHHHHHhCCCeeeCCCCCCCCccc
Q psy2068 11 SDSYLAQLTIDY-SFVCRMKWKQANVFKRHGLEPINPLGEKFDPNF 55 (97)
Q Consensus 11 ~~~~~~~~~~~~-~G~~~i~~~l~~~L~~~Gv~~i~~~G~~FDP~~ 55 (97)
+.-++.++.++. +.+++++.++..-|+ +++.|+|.|..|-|+.
T Consensus 22 TeeEk~eQ~~LR~eYl~~fr~~vk~~l~--~ikiiDp~GnDVTP~K 65 (77)
T COG4224 22 TEEEKKEQAKLRREYLESFRGQVKNQLE--NIKIIDPKGNDVTPEK 65 (77)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhhc--ceeeeCCCCCCCChHH
Confidence 334555555554 355777788887775 7889999999998863
No 32
>PF14814 UB2H: Bifunctional transglycosylase second domain; PDB: 3FWL_A 3VMA_A.
Probab=51.44 E-value=36 Score=21.32 Aligned_cols=48 Identities=10% Similarity=0.178 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHhCCCeeeCC---CCCCCCcccceeeeEeecCCCCCCeeEEEEecCeeeCCE
Q psy2068 22 YSFVCRMKWKQANVFKRHGLEPINP---LGEKFDPNFHEALFEQEVEGKEANTVVVVSKIGYKLYNR 85 (97)
Q Consensus 22 ~~G~~~i~~~l~~~L~~~Gv~~i~~---~G~~FDP~~HeAv~~~~~~~~~~gtV~~V~~~GY~~~~r 85 (97)
++|..+..++|.+.|+.+|...... .|+ | .-.|..+.+.+.||.+.|.
T Consensus 2 y~G~~ls~~~l~~eL~~LgYR~v~~~~~pG~-y---------------~~~g~~i~i~~R~F~F~Dg 52 (85)
T PF14814_consen 2 YPGAPLSPAQLEQELELLGYRKVSNPDRPGE-Y---------------SRSGNRIEIYTRGFDFPDG 52 (85)
T ss_dssp -TT-S--HHHHHHHHHHTT-EE-SS--STTE-E---------------EEETTEEEEEE--EEETTC
T ss_pred CCCcccCHHHHHHHHHHcCCCcCCCCCCCeE-E---------------EEECCEEEEEECCCCCCCC
Confidence 5677888999999999999999864 343 1 1234678999999999865
No 33
>COG0309 HypE Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=42.62 E-value=53 Score=26.37 Aligned_cols=40 Identities=8% Similarity=0.067 Sum_probs=35.0
Q ss_pred hccccchHHHHhhhccHHHHHHHHHHHHHHHHhCCCeeeC
Q psy2068 6 QKNWMSDSYLAQLTIDYSFVCRMKWKQANVFKRHGLEPIN 45 (97)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~G~~~i~~~l~~~L~~~Gv~~i~ 45 (97)
.|-|.+.+.+-......+-++.|.+++.+..++.|+..+.
T Consensus 88 ~P~~l~~~lil~eg~~~e~l~~i~~si~e~a~~~Gv~Ivt 127 (339)
T COG0309 88 KPRYLSVGLILPEGLPIEDLERILKSIDEEAEEAGVSIVT 127 (339)
T ss_pred CceeeeEeEecCCCCCHHHHHHHHHHHHHHHHHcCCeEEc
Confidence 4678888888887778888999999999999999999987
No 34
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=42.40 E-value=21 Score=26.20 Aligned_cols=56 Identities=16% Similarity=0.111 Sum_probs=42.8
Q ss_pred cHHHHH-HHHHHHHHHHHhCCCeeeCCCC--CCCCcccceeeeEeecCCCCCCeeEEEEec
Q psy2068 21 DYSFVC-RMKWKQANVFKRHGLEPINPLG--EKFDPNFHEALFEQEVEGKEANTVVVVSKI 78 (97)
Q Consensus 21 ~~~G~~-~i~~~l~~~L~~~Gv~~i~~~G--~~FDP~~HeAv~~~~~~~~~~gtV~~V~~~ 78 (97)
+.++++ .....+.++++...+-.||.+| +-+-+.+|+++..+-.++.+ -|+.+.++
T Consensus 82 ~v~~le~i~~~al~rA~~~aDvIIIDEIGpMElks~~f~~~ve~vl~~~kp--liatlHrr 140 (179)
T COG1618 82 NVEGLEEIAIPALRRALEEADVIIIDEIGPMELKSKKFREAVEEVLKSGKP--LIATLHRR 140 (179)
T ss_pred eHHHHHHHhHHHHHHHhhcCCEEEEecccchhhccHHHHHHHHHHhcCCCc--EEEEEecc
Confidence 356666 4567889999999999999998 57899999999977655544 56666654
No 35
>COG5440 Uncharacterized conserved protein [Function unknown]
Probab=39.27 E-value=1.1e+02 Score=22.19 Aligned_cols=46 Identities=13% Similarity=0.088 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHhCCCeeeCCCCCCCCcccceeeeEeecCCCCCCeeEEEEecC
Q psy2068 27 RMKWKQANVFKRHGLEPINPLGEKFDPNFHEALFEQEVEGKEANTVVVVSKIG 79 (97)
Q Consensus 27 ~i~~~l~~~L~~~Gv~~i~~~G~~FDP~~HeAv~~~~~~~~~~gtV~~V~~~G 79 (97)
+..+++.+.|.+.|.-...+.-+ |..+|=++.- .+.|.++.|+|+-
T Consensus 5 ~~d~~I~~WL~EeG~~~~kv~~~--na~fH~~v~~-----P~~~~~i~VI~p~ 50 (161)
T COG5440 5 DSDNMILDWLAEEGNVSVKVPDE--NAPFHFVVKP-----PTGGKVISVIQPP 50 (161)
T ss_pred hHHHHHHHHHHHhCceeeccCCC--CCceeEEecC-----CCCCceEEEEecC
Confidence 34578999999999998887422 4455666541 1234888988874
No 36
>PF06890 Phage_Mu_Gp45: Bacteriophage Mu Gp45 protein; InterPro: IPR014462 This entry is represented by the Bacteriophage Mu, Gp45. The characteristics of the protein distribution suggest prophage matches.
Probab=35.08 E-value=83 Score=22.49 Aligned_cols=53 Identities=21% Similarity=0.362 Sum_probs=36.2
Q ss_pred HHHHhCCCeeeCCCCCCCCcccceeeeEeecCCCCCCeeEEEEecCeeeCCEEeeeceEEee
Q psy2068 34 NVFKRHGLEPINPLGEKFDPNFHEALFEQEVEGKEANTVVVVSKIGYKLYNRVIRPALVGIS 95 (97)
Q Consensus 34 ~~L~~~Gv~~i~~~G~~FDP~~HeAv~~~~~~~~~~gtV~~V~~~GY~~~~rvLRpA~V~V~ 95 (97)
..|+.+|+..-++.|. +++-.....+...+.|+.+--+.|++.+ |.|-+|.++
T Consensus 31 e~~q~yGftS~Pp~Ga-------~~vvl~lGG~rs~~Vvia~~d~~yR~~~--L~~GEvalY 83 (162)
T PF06890_consen 31 ERFQQYGFTSVPPPGA-------EAVVLFLGGDRSHGVVIAVEDRRYRPKG--LKPGEVALY 83 (162)
T ss_pred chhhcCccccCCCCCC-------eEEEEEeccCCcceEEEEeCCccccccC--CCCCcEEEE
Confidence 4688899999888886 5666555555566777777777777765 445554443
No 37
>KOG0762|consensus
Probab=34.01 E-value=51 Score=25.86 Aligned_cols=44 Identities=11% Similarity=0.040 Sum_probs=37.9
Q ss_pred chhhhccccchHHHHhhhccHHHHHHHHHHHHHHHHhCCCeeeC
Q psy2068 2 LFSYQKNWMSDSYLAQLTIDYSFVCRMKWKQANVFKRHGLEPIN 45 (97)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~G~~~i~~~l~~~L~~~Gv~~i~ 45 (97)
..||+-+||.|.-+..+.++....+-+.+-+.+...+.|...+-
T Consensus 213 m~SWla~Yp~DVVKtrlQad~~~Y~g~~dC~~ks~r~eG~r~f~ 256 (311)
T KOG0762|consen 213 MASWLACYPLDVVKTRLQADHLAYEGIADCFRKSYRQEGYRVFF 256 (311)
T ss_pred HHHHHHhccHHHHHHHHhccccchhhHHHHHHHHHHhcCceeeh
Confidence 36999999999999999888877888888899999999987764
No 38
>PF13730 HTH_36: Helix-turn-helix domain
Probab=32.69 E-value=82 Score=17.35 Aligned_cols=31 Identities=19% Similarity=0.078 Sum_probs=20.7
Q ss_pred cccchHHHHhhhccHHHHHHHHHHHHHHHHhCCC
Q psy2068 8 NWMSDSYLAQLTIDYSFVCRMKWKQANVFKRHGL 41 (97)
Q Consensus 8 ~~~~~~~~~~~~~~~~G~~~i~~~l~~~L~~~Gv 41 (97)
-|||-+.+++.-... +.+..+..+.|++.|+
T Consensus 24 ~~pS~~~la~~~g~s---~~Tv~~~i~~L~~~G~ 54 (55)
T PF13730_consen 24 CFPSQETLAKDLGVS---RRTVQRAIKELEEKGL 54 (55)
T ss_pred CCcCHHHHHHHHCcC---HHHHHHHHHHHHHCcC
Confidence 689888888773222 4455666677887775
No 39
>KOG0257|consensus
Probab=32.38 E-value=76 Score=26.27 Aligned_cols=30 Identities=17% Similarity=0.149 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHhCCCeeeCCCCCCC
Q psy2068 22 YSFVCRMKWKQANVFKRHGLEPINPLGEKF 51 (97)
Q Consensus 22 ~~G~~~i~~~l~~~L~~~Gv~~i~~~G~~F 51 (97)
.+-++-=++.|.+.|++.|+..+.+.|..|
T Consensus 309 ~~~y~~krdil~k~L~~lg~~v~~p~gayy 338 (420)
T KOG0257|consen 309 VKEYKEKRDILAKALEELGLKVTGPEGAYY 338 (420)
T ss_pred HHHHHHHHHHHHHHHHhcCCccccCCCceE
Confidence 334444467899999999999999999865
No 40
>PF08823 PG_binding_2: Putative peptidoglycan binding domain; InterPro: IPR014927 This entry may be a peptidoglycan binding domain.
Probab=31.12 E-value=31 Score=21.50 Aligned_cols=35 Identities=20% Similarity=0.170 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHhCCCeeeCCCCCCCCcccceeeeEe
Q psy2068 27 RMKWKQANVFKRHGLEPINPLGEKFDPNFHEALFEQ 62 (97)
Q Consensus 27 ~i~~~l~~~L~~~Gv~~i~~~G~~FDP~~HeAv~~~ 62 (97)
-+.+.+.+.|.++|.-.-.+-| .||...++|...-
T Consensus 16 ~~~~evq~~L~~lGyy~g~~~g-~~d~a~~~Al~~~ 50 (74)
T PF08823_consen 16 DVAREVQEALKRLGYYKGEADG-VWDEATEDALRAW 50 (74)
T ss_pred HHHHHHHHHHHHcCCccCCCCC-cccHHHHHHHHHH
Confidence 3567899999999996655445 5999999987643
No 41
>COG4043 Preprotein translocase subunit Sec61beta [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.72 E-value=26 Score=23.76 Aligned_cols=25 Identities=12% Similarity=0.181 Sum_probs=21.5
Q ss_pred HHHHHHHHHHhCCCeeeCCCCCCCC
Q psy2068 28 MKWKQANVFKRHGLEPINPLGEKFD 52 (97)
Q Consensus 28 i~~~l~~~L~~~Gv~~i~~~G~~FD 52 (97)
.++.|.++|++.|++.+.|-+..|+
T Consensus 56 ~Y~tF~~mlreepiE~v~p~~~S~e 80 (111)
T COG4043 56 VYDTFEEMLREEPIENVLPDVPSFE 80 (111)
T ss_pred ehhHHHHHHHhcChhhhCCCCccHH
Confidence 3789999999999999999776665
No 42
>PF04566 RNA_pol_Rpb2_4: RNA polymerase Rpb2, domain 4; InterPro: IPR007646 RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial and chloroplast polymerases). Domain 4, is also known as the external 2 domain [].; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3S17_B 1I6H_B 4A3B_B 3K1F_B 4A3I_B 1TWA_B 3S14_B 3S15_B 2NVX_B 3M3Y_B ....
Probab=30.32 E-value=46 Score=20.01 Aligned_cols=14 Identities=29% Similarity=0.275 Sum_probs=10.0
Q ss_pred eeeCCEEeeeceEE
Q psy2068 80 YKLYNRVIRPALVG 93 (97)
Q Consensus 80 Y~~~~rvLRpA~V~ 93 (97)
|.-.||++||--|+
T Consensus 48 ~tD~GR~~RPL~vV 61 (63)
T PF04566_consen 48 NTDAGRLCRPLFVV 61 (63)
T ss_dssp E-SSCEEEEEEEEE
T ss_pred EccCCcccceeEEe
Confidence 45579999997664
No 43
>COG1945 Pyruvoyl-dependent arginine decarboxylase (PvlArgDC) [Amino acid transport and metabolism]
Probab=27.45 E-value=95 Score=22.50 Aligned_cols=59 Identities=14% Similarity=0.109 Sum_probs=39.1
Q ss_pred HHHHHHHHhCCCeeeCC--CCCCCCcccceeeeEeec-CCCCCCeeEEEEecCeeeC--CEEeee
Q psy2068 30 WKQANVFKRHGLEPINP--LGEKFDPNFHEALFEQEV-EGKEANTVVVVSKIGYKLY--NRVIRP 89 (97)
Q Consensus 30 ~~l~~~L~~~Gv~~i~~--~G~~FDP~~HeAv~~~~~-~~~~~gtV~~V~~~GY~~~--~rvLRp 89 (97)
..|+..|.+.||+.++- +-..+=|+. +.|..++. ++.++|.|+.++-.-..-+ ||.|-.
T Consensus 23 ~aFd~AL~dAgI~~~NLV~vSSIlPp~~-~~V~~e~gl~kl~pG~iv~~V~Ar~~S~~~G~~isa 86 (163)
T COG1945 23 NAFDAALLDAGIENFNLVPVSSILPPNC-EIVDPEDGLPKLPPGAILFCVMARGTSNEPGRTISA 86 (163)
T ss_pred HhHHHHHHhCCCcccceEEEecccCCcc-cccchhhcCCcCCCCcEEeEEEeecccCCCCceeee
Confidence 57999999999999885 445555554 44443332 4578999998887644433 455543
No 44
>PF14357 DUF4404: Domain of unknown function (DUF4404)
Probab=27.09 E-value=64 Score=20.47 Aligned_cols=26 Identities=4% Similarity=0.098 Sum_probs=19.9
Q ss_pred HhhhccHHHHHHHHHHHHHHHHhCCC
Q psy2068 16 AQLTIDYSFVCRMKWKQANVFKRHGL 41 (97)
Q Consensus 16 ~~~~~~~~G~~~i~~~l~~~L~~~Gv 41 (97)
..+.+.-+.+.++.+.+.+.|.+.||
T Consensus 60 ~~FE~~HP~l~~~lr~i~~sLa~MGI 85 (85)
T PF14357_consen 60 ERFEASHPKLAGILRNIMDSLANMGI 85 (85)
T ss_pred HHHHHhCCcHHHHHHHHHHHHHHCCC
Confidence 34555556667889999999999996
No 45
>COG4226 HicB Predicted nuclease of the RNAse H fold, HicB family [General function prediction only]
Probab=27.02 E-value=52 Score=22.41 Aligned_cols=37 Identities=30% Similarity=0.377 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHhCCCeeeCC-CCC---CCCcccceeeeE
Q psy2068 25 VCRMKWKQANVFKRHGLEPINP-LGE---KFDPNFHEALFE 61 (97)
Q Consensus 25 ~~~i~~~l~~~L~~~Gv~~i~~-~G~---~FDP~~HeAv~~ 61 (97)
..+-.+.+...-+..|+++-.+ -|+ ..||.+|++...
T Consensus 47 ~~~s~~~yle~C~~~g~EP~k~~SGkf~~Ri~p~lH~~a~~ 87 (111)
T COG4226 47 GELSLDDYLEFCKERGIEPRKPYSGKFNLRIDPELHEAAAL 87 (111)
T ss_pred HHhhHHHHHHHHHHcCCCCccccCceeeEecCHHHHHHHHH
Confidence 3344555666667889888887 565 668999998653
No 46
>PF01849 NAC: NAC domain; InterPro: IPR002715 Nascent polypeptide-associated complex (NAC) is among the first ribosome-associated entities to bind the nascent polypeptide after peptide bond formation. The nascent polypeptide-associated complex (NAC) of yeast functions in the targeting process of ribosomes to the ER membrane []. NAC may prevent binding of ribosome nascent chains (RNCs) without a signal sequence to yeast membranes.; PDB: 3MCE_D 3MCB_A 3LKX_B 1TR8_B.
Probab=26.79 E-value=35 Score=19.86 Aligned_cols=17 Identities=29% Similarity=0.376 Sum_probs=8.5
Q ss_pred HHHHHHHHhCCCeeeCC
Q psy2068 30 WKQANVFKRHGLEPINP 46 (97)
Q Consensus 30 ~~l~~~L~~~Gv~~i~~ 46 (97)
+++.+.|+++|++.|+-
T Consensus 2 kk~~~~l~klgl~~i~~ 18 (58)
T PF01849_consen 2 KKLQKMLKKLGLKEIPG 18 (58)
T ss_dssp ------GHHCT-EEETT
T ss_pred HHHHHHHHHcCCcccCC
Confidence 46788999999988864
No 47
>PF04806 EspF: EspF protein repeat; InterPro: IPR006891 Enteropathogenic Escherichia coli O127:H6 attaches to the intestinal muscosa through actin pedestals that are created after it has injected the Type III secretion protein EspF (E. coli secreted protein F-like protein from prophage U) into the cells. EspF recruits the actin machinery by activating the WASP (Wiscott-Aldrich syndrome protein) family of actin nucleating factors []. Subsequent cell-death (apoptosis) is caused by EspF being targeted to the mitochondria as a consequence of its mitochondrial targeting sequence. Import into mitochondria leads to a loss of membrane potential, leakage of cytochrome c and activation of the apoptotic caspase cascade. Mutation of leucine to glutamic at position 16 of EspF (L16E) resulted in the failure of EspF import into mitochondria; mitochondrial membrane potential was not affected and cell death abolished. This suggests that the targeting of EspF to mitochondria is essential for bacterial pathogenesis and apoptosis [, ].; PDB: 2KXC_B 2K42_B.
Probab=26.53 E-value=38 Score=19.53 Aligned_cols=33 Identities=12% Similarity=0.027 Sum_probs=14.1
Q ss_pred ccccchHHHHhhhccHHHHHHHHHHHHHHHHhCC
Q psy2068 7 KNWMSDSYLAQLTIDYSFVCRMKWKQANVFKRHG 40 (97)
Q Consensus 7 ~~~~~~~~~~~~~~~~~G~~~i~~~l~~~L~~~G 40 (97)
++||.-.-..| |....++--+.+.|.+-|+.+|
T Consensus 15 P~rPAPpPPtQ-NnQs~~lp~vaq~l~~hla~hg 47 (47)
T PF04806_consen 15 PNRPAPPPPTQ-NNQSRPLPPVAQRLKDHLAEHG 47 (47)
T ss_dssp -SS----------------SSHHHHHHHHHHTTT
T ss_pred CCCCCCCCCCc-ccccCCCchHHHHHHHHHHhcC
Confidence 48888766665 6667777778888888888776
No 48
>cd02412 30S_S3_KH K homology RNA-binding (KH) domain of the prokaryotic 30S small ribosomal subunit protein S3. S3 is part of the head region of the 30S ribosomal subunit and is believed to interact with mRNA as it threads its way from the latch into the channel. The KH motif is a beta-alpha-alpha-beta-beta unit that folds into an alpha-beta structure with a three stranded beta-sheet interupted by two contiguous helices. In general, KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.
Probab=26.15 E-value=79 Score=20.69 Aligned_cols=40 Identities=18% Similarity=0.358 Sum_probs=26.7
Q ss_pred hhhhccccchH--HHHhhhccHHHHHHHHHHHHHHHHhCCCeeeCC
Q psy2068 3 FSYQKNWMSDS--YLAQLTIDYSFVCRMKWKQANVFKRHGLEPINP 46 (97)
Q Consensus 3 ~~~~~~~~~~~--~~~~~~~~~~G~~~i~~~l~~~L~~~Gv~~i~~ 46 (97)
++|.-.|=+.+ |..-+ .+.+ ++++-|.+.|.+.|+..|+-
T Consensus 15 ~~~~s~W~~~~~~y~~~l---~ed~-~IR~yL~k~~~~agis~I~I 56 (109)
T cd02412 15 KDWDSRWYADKKDYAELL---HEDL-KIRKFIKKKLKKAGISRIEI 56 (109)
T ss_pred CCCcceEcCCchhhHHHH---HhHH-HHHHHHHHHHhhCCccEEEE
Confidence 46777777653 33222 2222 67888889999999988875
No 49
>PRK00407 hypothetical protein; Provisional
Probab=25.03 E-value=27 Score=24.09 Aligned_cols=13 Identities=62% Similarity=1.043 Sum_probs=10.9
Q ss_pred CCCCCCcccceee
Q psy2068 47 LGEKFDPNFHEAL 59 (97)
Q Consensus 47 ~G~~FDP~~HeAv 59 (97)
-|++|||..|+.-
T Consensus 99 ~Ge~~d~~~H~~~ 111 (139)
T PRK00407 99 WGEKFDPEIHERR 111 (139)
T ss_pred EeeecCcccccCC
Confidence 5899999999853
No 50
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=23.92 E-value=67 Score=17.70 Aligned_cols=60 Identities=17% Similarity=0.114 Sum_probs=28.8
Q ss_pred HHHHHHHHHHhCCCeeeCCCCCCCCcccceeeeEeecCCCCCCeeEEEEecCeeeCCEEee
Q psy2068 28 MKWKQANVFKRHGLEPINPLGEKFDPNFHEALFEQEVEGKEANTVVVVSKIGYKLYNRVIR 88 (97)
Q Consensus 28 i~~~l~~~L~~~Gv~~i~~~G~~FDP~~HeAv~~~~~~~~~~gtV~~V~~~GY~~~~rvLR 88 (97)
+.+.|.+.|+++|--..-..-.. ....+.....+.=.+.++-.-+-..-.|+.++|+.||
T Consensus 11 t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 11 TEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp SHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 34678888998885521111110 1222222222222222222222223578999999887
No 51
>COG3710 CadC DNA-binding winged-HTH domains [Transcription]
Probab=23.84 E-value=66 Score=22.37 Aligned_cols=21 Identities=29% Similarity=0.398 Sum_probs=17.6
Q ss_pred CeeEEEEecCeeeCCEEeeec
Q psy2068 70 NTVVVVSKIGYKLYNRVIRPA 90 (97)
Q Consensus 70 gtV~~V~~~GY~~~~rvLRpA 90 (97)
.-|..|-++||++.+.+...+
T Consensus 90 ~~I~TvPrrGyk~~~~v~~~~ 110 (148)
T COG3710 90 RLIATVPRRGYKFTADVIIII 110 (148)
T ss_pred eEEEEeCCcceEEecceEEec
Confidence 348999999999999887765
No 52
>PRK09004 FMN-binding protein MioC; Provisional
Probab=23.84 E-value=1.2e+02 Score=20.72 Aligned_cols=27 Identities=22% Similarity=0.281 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHhCCCeeeCCCC
Q psy2068 22 YSFVCRMKWKQANVFKRHGLEPINPLG 48 (97)
Q Consensus 22 ~~G~~~i~~~l~~~L~~~Gv~~i~~~G 48 (97)
++.+....+.+.+.|+++|.++|.+.|
T Consensus 95 Y~~fc~~~~~ld~~l~~lGa~~v~~~~ 121 (146)
T PRK09004 95 YDTFCGAIDKLEQLLKAKGAKQIGETL 121 (146)
T ss_pred HHHHhHHHHHHHHHHHHcCCeEeeccE
Confidence 567788889999999999999998754
No 53
>PF05657 DUF806: Protein of unknown function (DUF806); InterPro: IPR008524 This entry is represented by Streptococcus phage 7201, Orf30. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several Siphovirus and Lactococcus proteins of unknown function. The viral sequences are thought to be tail component proteins.
Probab=23.04 E-value=2.5e+02 Score=19.08 Aligned_cols=38 Identities=13% Similarity=0.232 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHhCCCeeeCCCCCCCCcccceeeeEe
Q psy2068 25 VCRMKWKQANVFKRHGLEPINPLGEKFDPNFHEALFEQ 62 (97)
Q Consensus 25 ~~~i~~~l~~~L~~~Gv~~i~~~G~~FDP~~HeAv~~~ 62 (97)
+..+..+|.+.|...|-......|...||.--|...+.
T Consensus 78 ~~~~E~~L~~~~~~~~W~i~~s~~ht~DPdT~Q~t~tf 115 (123)
T PF05657_consen 78 IDDFEIALMKLFEDNGWQISSSRGHTVDPDTQQITKTF 115 (123)
T ss_pred HHHHHHHHHHHHHhCCEEEEeCCCCcCCCCCCcEEEEE
Confidence 34556799999999999999999999999988776654
No 54
>PF11691 DUF3288: Protein of unknown function (DUF3288); InterPro: IPR021705 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=22.71 E-value=56 Score=21.47 Aligned_cols=32 Identities=22% Similarity=0.313 Sum_probs=22.7
Q ss_pred HHHHhhhccHHH---HHHHHHHHHHHHHhCCCeee
Q psy2068 13 SYLAQLTIDYSF---VCRMKWKQANVFKRHGLEPI 44 (97)
Q Consensus 13 ~~~~~~~~~~~G---~~~i~~~l~~~L~~~Gv~~i 44 (97)
.+++.+..=+.| -+-|.+.|.++|+++|+++-
T Consensus 29 ~eLARL~iRY~gFPGA~diq~DL~kiL~~W~ltee 63 (90)
T PF11691_consen 29 AELARLRIRYQGFPGARDIQKDLDKILQKWGLTEE 63 (90)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCHH
Confidence 344444444444 47888999999999999763
No 55
>COG1671 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.54 E-value=95 Score=22.17 Aligned_cols=25 Identities=20% Similarity=0.348 Sum_probs=21.2
Q ss_pred HHHHHHHhCCCeeeCCCCCCCCccc
Q psy2068 31 KQANVFKRHGLEPINPLGEKFDPNF 55 (97)
Q Consensus 31 ~l~~~L~~~Gv~~i~~~G~~FDP~~ 55 (97)
.|-+.|-+-|+..+++-|+.||++-
T Consensus 76 ~LA~~ll~kg~~v~~prGr~y~~~n 100 (150)
T COG1671 76 PLASLLLDKGAAVLNPRGRLYTEEN 100 (150)
T ss_pred HHHHHHHhcCCEEECCCCcccCHhH
Confidence 4666777899999999999999864
No 56
>cd07253 Glo_EDI_BRP_like_2 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=22.54 E-value=1.9e+02 Score=17.40 Aligned_cols=46 Identities=7% Similarity=-0.103 Sum_probs=26.0
Q ss_pred HHHHHHHHHhCCCeeeCCCCCCCCcccceeeeEeecCCCCCCeeEEEEe
Q psy2068 29 KWKQANVFKRHGLEPINPLGEKFDPNFHEALFEQEVEGKEANTVVVVSK 77 (97)
Q Consensus 29 ~~~l~~~L~~~Gv~~i~~~G~~FDP~~HeAv~~~~~~~~~~gtV~~V~~ 77 (97)
.+.+.+.|.+.|++.+......++.....-.....+ |+|..+++.+
T Consensus 79 ~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~D---PdG~~ve~~~ 124 (125)
T cd07253 79 IDELVAHLEAHGVPIEEGPVPRTGARGPITSVYFRD---PDGNLIELSN 124 (125)
T ss_pred HHHHHHHHHHCCceeecCcccccCCCCCccEEEEEC---CCCCEEEeee
Confidence 356777888899988765444343221111122333 4677877654
No 57
>PF07927 YcfA: YcfA-like protein; InterPro: IPR012933 This entry represents UPF0395, which contains viral, archaeal and bacterial proteins. It includes YncN of Escherichia coli K12. Most of these proteins are hypothetical proteins of unknown function. ; GO: 0016788 hydrolase activity, acting on ester bonds; PDB: 1WHZ_A.
Probab=21.77 E-value=69 Score=17.89 Aligned_cols=20 Identities=15% Similarity=0.410 Sum_probs=15.8
Q ss_pred HHHHHHHHhCCCeeeCCCCC
Q psy2068 30 WKQANVFKRHGLEPINPLGE 49 (97)
Q Consensus 30 ~~l~~~L~~~Gv~~i~~~G~ 49 (97)
+++.++|+++|.+.....|.
T Consensus 2 ~el~k~L~~~G~~~~r~~GS 21 (56)
T PF07927_consen 2 RELIKLLEKAGFEEVRQKGS 21 (56)
T ss_dssp HHHHHHHHHTT-EEEEEETT
T ss_pred hHHHHHHHHCCCEEecCCCC
Confidence 57899999999999865565
No 58
>PF06230 DUF1009: Protein of unknown function (DUF1009); InterPro: IPR010415 This is a family of uncharacterised bacterial proteins.
Probab=21.71 E-value=92 Score=23.29 Aligned_cols=54 Identities=9% Similarity=0.177 Sum_probs=37.2
Q ss_pred hhhhccccchHHHHhh-hccHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCCccccee
Q psy2068 3 FSYQKNWMSDSYLAQL-TIDYSFVCRMKWKQANVFKRHGLEPINPLGEKFDPNFHEA 58 (97)
Q Consensus 3 ~~~~~~~~~~~~~~~~-~~~~~G~~~i~~~l~~~L~~~Gv~~i~~~G~~FDP~~HeA 58 (97)
.+-++.|-+-+.+..+ .++..|=..+.+.+.+.|++.|++.+++ ..|-|++.-.
T Consensus 28 ~~~~~D~~~~~~l~~~~~~l~~gDd~lL~av~~~le~~G~~vv~~--~~~~p~Ll~~ 82 (214)
T PF06230_consen 28 SDLRPDWRALKLLPRLLKALDRGDDALLRAVIDELEKEGFKVVGA--HEYLPDLLAP 82 (214)
T ss_pred cccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCEEEcH--HHhhHHhcCC
Confidence 3445666666666643 2235566678889999999999999987 3466666543
No 59
>PF07278 DUF1441: Protein of unknown function (DUF1441); InterPro: IPR009901 This entry is represented by Bacteriophage VT1-Sakai, H0025. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical Enterobacterial proteins of around 160 residues in length. The function of this family is unknown.
Probab=21.49 E-value=1.2e+02 Score=21.57 Aligned_cols=36 Identities=14% Similarity=0.167 Sum_probs=31.2
Q ss_pred cccchHHHHhhhccHHHHHHHHHHHHHHHHh-CCCee
Q psy2068 8 NWMSDSYLAQLTIDYSFVCRMKWKQANVFKR-HGLEP 43 (97)
Q Consensus 8 ~~~~~~~~~~~~~~~~G~~~i~~~l~~~L~~-~Gv~~ 43 (97)
.||.+-...++..+.+++.+..+-+=++|++ .|+.+
T Consensus 89 Lipa~eV~~~~s~~~Kav~q~LetlPD~LERd~gL~p 125 (152)
T PF07278_consen 89 LIPAEEVRREMSEMAKAVVQVLETLPDILERDAGLPP 125 (152)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHhhHHHHhcCCCCH
Confidence 7999988888888999999999999999997 77653
No 60
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=21.43 E-value=1.7e+02 Score=20.05 Aligned_cols=36 Identities=14% Similarity=0.212 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHhCCCeeeCCCCCCCCcccce
Q psy2068 22 YSFVCRMKWKQANVFKRHGLEPINPLGEKFDPNFHE 57 (97)
Q Consensus 22 ~~G~~~i~~~l~~~L~~~Gv~~i~~~G~~FDP~~He 57 (97)
.+..+..++++...+++.|+...+--...++|.+.+
T Consensus 71 ~~~r~~~y~kI~~~~~~~gf~v~D~s~~~y~~yfm~ 106 (130)
T PF04914_consen 71 KEMRQEYYKKIKYQLKSQGFNVADFSDDEYEPYFMQ 106 (130)
T ss_dssp HHHHHHHHHHHHHHHHTTT--EEE-TTGTTSTTSBS
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEecccCCCCCceee
Confidence 344556788999999999998777766778887654
No 61
>PF10061 DUF2299: Uncharacterized conserved protein (DUF2299); InterPro: IPR018747 Members of this family of hypothetical bacterial proteins have no known function. ; PDB: 3CXJ_D.
Probab=20.44 E-value=2.4e+02 Score=19.45 Aligned_cols=41 Identities=24% Similarity=0.276 Sum_probs=24.6
Q ss_pred HHHHHHHhCCCeeeCCCCCCCCcccceeeeEeecCCCCCCeeEEEEec
Q psy2068 31 KQANVFKRHGLEPINPLGEKFDPNFHEALFEQEVEGKEANTVVVVSKI 78 (97)
Q Consensus 31 ~l~~~L~~~Gv~~i~~~G~~FDP~~HeAv~~~~~~~~~~gtV~~V~~~ 78 (97)
++.+.|...|+..-.+.++ +.++|-.+.. +. .|.+++|+++
T Consensus 1 ~I~~WL~eeG~~~~~~~~~--~~~fh~~v~~---P~--~~~~~~Vi~P 41 (138)
T PF10061_consen 1 EIENWLKEEGLKVEEPPDA--NAYFHILVSP---PQ--GGVVVDVIRP 41 (138)
T ss_dssp HHHHHHHHTT-EEEE---T--TEEEEEEEE----ST---T-EEEEEEE
T ss_pred ChHHHHHhcCceEecCCCC--CceEEEEEeC---CC--CCceEEEEeE
Confidence 4678999999998887543 4556655542 22 5889999987
No 62
>PF01471 PG_binding_1: Putative peptidoglycan binding domain; InterPro: IPR002477 This entry represents peptidoglycan binding domain (PGBD), as well as related domains that share the same structure. PGBD may have a general peptidoglycan binding function, has a core structure consisting of a closed, three-helical bundle with a left-handed twist. It is found at the N or C terminus of a variety of enzymes involved in bacterial cell wall degradation [, , ]. Examples are: Muramoyl-pentapeptide carboxypeptidase (3.4.17.8 from EC) N-acetylmuramoyl-L-alanine amidase cwlA precursor (cell wall hydrolase, autolysin, 3.5.1.28 from EC) Autolytic lysozyme (1,4-beta-N-acetylmuramidase, autolysin, 3.2.1.17 from EC) Membrane-bound lytic murein transglycosylase B Zinc-containing D-alanyl-D-alanine-cleaving carboxypeptidase, VanX []. Many of the proteins having this domain are as yet uncharacterised. However, some are known to belong to MEROPS peptidase family M15 (clan MD), subfamily M15A metallopeptidases. A number of the proteins belonging to subfamily M15A are non-peptidase homologues as they either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity. Eukaryotic enzymes can contain structurally similar PGBD-like domains. Matrix metalloproteinases (MMP), which catalyse extracellular matrix degradation, have N-terminal domains that resemble PGBD. Examples are gelatinase A (MMP-2), which degrades type IV collagen [], stromelysin-1 (MMP-3), which plays a role in arthritis and tumour invasion [, ], and gelatinase B (MMP-9) secreted by neutrophils as part of the innate immune defence mechanism []. Several MMPs are implicated in cancer progression, since degradation of the extracellular matrix is an essential step in the cascade of metastasis [].; GO: 0008152 metabolic process; PDB: 1L6J_A 3BKH_A 3BKV_A 1GXD_A 1EAK_D 1CK7_A 1SLM_A 1LBU_A 1SU3_B.
Probab=20.28 E-value=32 Score=19.28 Aligned_cols=33 Identities=24% Similarity=0.236 Sum_probs=23.8
Q ss_pred HHHHHHHHhCCCeeeCCCCCCCCcccceeeeEee
Q psy2068 30 WKQANVFKRHGLEPINPLGEKFDPNFHEALFEQE 63 (97)
Q Consensus 30 ~~l~~~L~~~Gv~~i~~~G~~FDP~~HeAv~~~~ 63 (97)
..+...|.++|...... ...||+..-+||....
T Consensus 6 ~~lq~~L~~~gy~~~~~-~g~~~~~t~~Av~~fQ 38 (57)
T PF01471_consen 6 KALQQYLNRLGYYPGPV-DGIFDPETREAVKAFQ 38 (57)
T ss_dssp HHHHHHHHHTTTT-SST-TSBSHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCC-CCCcCHHHHHHHHHHH
Confidence 46777888999874433 3469999999987554
Done!