Query psy2068
Match_columns 97
No_of_seqs 142 out of 1005
Neff 5.9
Searched_HMMs 29240
Date Fri Aug 16 23:30:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2068.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2068hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1dkg_A Nucleotide exchange fac 100.0 3.4E-31 1.1E-35 192.8 9.6 80 18-97 116-195 (197)
2 3a6m_A Protein GRPE, HSP-70 co 100.0 3.9E-30 1.3E-34 184.7 10.5 77 18-97 93-169 (177)
3 4ani_A Protein GRPE; chaperone 100.0 1.4E-30 4.7E-35 191.8 8.1 79 18-96 135-213 (213)
4 3cxj_A Uncharacterized protein 47.6 37 0.0013 23.5 5.0 43 28-78 4-46 (165)
5 3fyn_A Integron gene cassette 37.8 19 0.00066 22.3 2.2 26 33-58 149-176 (176)
6 1vaz_A NSFL1 cofactor P47; bet 26.7 27 0.00091 21.8 1.4 22 68-89 21-42 (88)
7 2dnr_A Synaptojanin-1; RRM dom 26.2 20 0.0007 22.4 0.8 53 28-90 28-81 (91)
8 1wi8_A EIF-4B, eukaryotic tran 24.6 14 0.0005 21.9 -0.2 59 28-89 28-88 (104)
9 3tu3_A EXOU chaperone, SPCU; t 23.0 20 0.00067 24.3 0.2 14 69-82 53-66 (161)
10 2lkt_A Retinoic acid receptor 20.6 63 0.0022 20.3 2.3 27 63-89 4-36 (125)
No 1
>1dkg_A Nucleotide exchange factor GRPE; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: b.73.1.1 h.1.9.1
Probab=99.97 E-value=3.4e-31 Score=192.81 Aligned_cols=80 Identities=25% Similarity=0.360 Sum_probs=77.1
Q ss_pred hhccHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCCcccceeeeEeecCCCCCCeeEEEEecCeeeCCEEeeeceEEeecC
Q psy2068 18 LTIDYSFVCRMKWKQANVFKRHGLEPINPLGEKFDPNFHEALFEQEVEGKEANTVVVVSKIGYKLYNRVIRPALVGISKS 97 (97)
Q Consensus 18 ~~~~~~G~~~i~~~l~~~L~~~Gv~~i~~~G~~FDP~~HeAv~~~~~~~~~~gtV~~V~~~GY~~~~rvLRpA~V~V~k~ 97 (97)
.+++.+|++||+++|.++|+++||++|+++|++|||++||||+++++++.++|||++|+|+||+++|||||||+|+|+++
T Consensus 116 ~~~l~~Gv~~~~~~l~~~L~~~Gv~~i~~~G~~FDP~~HeAv~~~~~~~~~~~tVv~v~qkGY~l~dRvLRpA~V~V~~~ 195 (197)
T 1dkg_A 116 MSAMVEDIELTLKSMLDVVRKFGVEVIAETNVPLDPNVHQAIAMVESDDVAPGNVLGIMQKGYTLNGRTIRAAMVTVAKA 195 (197)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTTTEEEECCCSSBCCTTSEEEEEEEECSSSCTTBEEEEEECEEEETTEEEECEEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCEEeCCCCCCCCHHHhheeeeecCCCCCcCeEEEEeeCCeeeCCEEecceEEEecCC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999974
No 2
>3a6m_A Protein GRPE, HSP-70 cofactor; coiled-coil, four-helix bundle, dimer, chaperone, STRE response; 3.23A {Thermus thermophilus}
Probab=99.96 E-value=3.9e-30 Score=184.74 Aligned_cols=77 Identities=25% Similarity=0.312 Sum_probs=73.4
Q ss_pred hhccHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCCcccceeeeEeecCCCCCCeeEEEEecCeeeCCEEeeeceEEeecC
Q psy2068 18 LTIDYSFVCRMKWKQANVFKRHGLEPINPLGEKFDPNFHEALFEQEVEGKEANTVVVVSKIGYKLYNRVIRPALVGISKS 97 (97)
Q Consensus 18 ~~~~~~G~~~i~~~l~~~L~~~Gv~~i~~~G~~FDP~~HeAv~~~~~~~~~~gtV~~V~~~GY~~~~rvLRpA~V~V~k~ 97 (97)
.+++.+|++||+++|.++|+++||++|+++|++|||++||||+++++ ++|||++|+|+||+++|||||||+|+|+++
T Consensus 93 ~~~l~~Gv~m~~~~l~~~L~k~Gv~~i~~~Ge~FDP~~HeAv~~~~~---~~gtVv~v~qkGY~l~dRvLRpA~V~V~~~ 169 (177)
T 3a6m_A 93 PESIRQGVRAIRDGFFRILAGLGVEEVPGEGEAFDPRYHEAVGLLPG---EPGKVAKVFQRGFRMGEALVRPARVAVGEE 169 (177)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCEECCCTTSBCCTTTEEEEEEEES---STTBEEEEEECCEEETTEEEECEEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCEEeCCCCCCCCHHHhhhhhcccC---CcCeEEEEeecCeeeCCEEecCeEEEEeCC
Confidence 45689999999999999999999999999999999999999999987 789999999999999999999999999974
No 3
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=99.96 E-value=1.4e-30 Score=191.76 Aligned_cols=79 Identities=37% Similarity=0.571 Sum_probs=76.2
Q ss_pred hhccHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCCcccceeeeEeecCCCCCCeeEEEEecCeeeCCEEeeeceEEeec
Q psy2068 18 LTIDYSFVCRMKWKQANVFKRHGLEPINPLGEKFDPNFHEALFEQEVEGKEANTVVVVSKIGYKLYNRVIRPALVGISK 96 (97)
Q Consensus 18 ~~~~~~G~~~i~~~l~~~L~~~Gv~~i~~~G~~FDP~~HeAv~~~~~~~~~~gtV~~V~~~GY~~~~rvLRpA~V~V~k 96 (97)
.+++.+|++||+++|.++|+++||++|+++|++|||++||||+++++++.++|||++|+|+||+++|||||||+|+|++
T Consensus 135 ~~~l~eGvemi~k~l~~~L~k~Gv~~I~~~Ge~FDP~~HeAv~~v~~~~~~~gtVv~V~qkGY~l~dRVLRpA~V~Va~ 213 (213)
T 4ani_A 135 AKSILQGMEMVYRSLVDALKKEGVEAIEAVGKPFDPYLHQAVMQAEAEGYEPNTVVEELQKGYKLKDRVLRPAMVKVSQ 213 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTEECCCCSSSCCCTTTEEEEEEECCSSSCSSSEEEEEECCCEETTSCCSCEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCEEeCCCCCCCCHHHceeeeeecCCCCCCCcEEEEEeCCeEECCEEeeceEEEeCC
Confidence 4568999999999999999999999999999999999999999999989999999999999999999999999999986
No 4
>3cxj_A Uncharacterized protein; PSI-II, structural genomics structure initiative; 2.80A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=47.64 E-value=37 Score=23.52 Aligned_cols=43 Identities=12% Similarity=0.125 Sum_probs=31.7
Q ss_pred HHHHHHHHHHhCCCeeeCCCCCCCCcccceeeeEeecCCCCCCeeEEEEec
Q psy2068 28 MKWKQANVFKRHGLEPINPLGEKFDPNFHEALFEQEVEGKEANTVVVVSKI 78 (97)
Q Consensus 28 i~~~l~~~L~~~Gv~~i~~~G~~FDP~~HeAv~~~~~~~~~~gtV~~V~~~ 78 (97)
..+++.+.|.+.|+..-.+.++ +..+|-.+.. |.|.+++|+++
T Consensus 4 ~~~~I~~WL~eeG~~v~~~~~a--~a~fH~~v~~------P~~p~~dVIrP 46 (165)
T 3cxj_A 4 SQEMIKKWLDEEGFLRMEVPDE--NARFHYVVNY------PEDHVIDIIQP 46 (165)
T ss_dssp HHHHHHHHHHHTTCEEEECCCT--TEEEEEEEEC------STTCEEEEEEE
T ss_pred cHHHHHHHHHHcCceEecCCCC--CCceEEEEeC------CCCCEEEEEee
Confidence 4678999999999999887544 3477776652 33467888886
No 5
>3fyn_A Integron gene cassette protein HFX_CASS3; integron cassette protein, mobIle metagenome, structural genomics, PSI-2; 1.45A {Uncultured bacterium}
Probab=37.83 E-value=19 Score=22.32 Aligned_cols=26 Identities=38% Similarity=0.705 Sum_probs=12.4
Q ss_pred HHHHHhCCCeeeCC--CCCCCCccccee
Q psy2068 33 ANVFKRHGLEPINP--LGEKFDPNFHEA 58 (97)
Q Consensus 33 ~~~L~~~Gv~~i~~--~G~~FDP~~HeA 58 (97)
.++++++|.+.++. ....++|..|||
T Consensus 149 ~~~y~k~GF~~~~~~~~~k~l~~~~~ea 176 (176)
T 3fyn_A 149 RGVYSRAGFEESGRMLLGQALAPPIHEA 176 (176)
T ss_dssp --HHHHTTCCCCCCCCCCCCSSCCTTC-
T ss_pred HHHHHHCCCeeccceEEEEEecCccccC
Confidence 34555555555544 244555666554
No 6
>1vaz_A NSFL1 cofactor P47; beta-BETA-beta-alpha-alpha-beta, novel fold, lipid binding protein; NMR {Rattus norvegicus} SCOP: d.245.1.1
Probab=26.73 E-value=27 Score=21.81 Aligned_cols=22 Identities=27% Similarity=0.446 Sum_probs=17.7
Q ss_pred CCCeeEEEEecCeeeCCEEeee
Q psy2068 68 EANTVVVVSKIGYKLYNRVIRP 89 (97)
Q Consensus 68 ~~gtV~~V~~~GY~~~~rvLRp 89 (97)
+...++...+.||.++|=-||+
T Consensus 21 ~v~~~LtlW~nGFtVdDGpLR~ 42 (88)
T 1vaz_A 21 DVHVVLKLWKTGFSLDNGDLRS 42 (88)
T ss_dssp CCEEEEEEETTEEECTTSCEEE
T ss_pred CceEEEEEecCceEecCCCCcC
Confidence 3446799999999999877775
No 7
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.23 E-value=20 Score=22.38 Aligned_cols=53 Identities=25% Similarity=0.187 Sum_probs=30.7
Q ss_pred HHHHHHHHHHhCC-CeeeCCCCCCCCcccceeeeEeecCCCCCCeeEEEEecCeeeCCEEeeec
Q psy2068 28 MKWKQANVFKRHG-LEPINPLGEKFDPNFHEALFEQEVEGKEANTVVVVSKIGYKLYNRVIRPA 90 (97)
Q Consensus 28 i~~~l~~~L~~~G-v~~i~~~G~~FDP~~HeAv~~~~~~~~~~gtV~~V~~~GY~~~~rvLRpA 90 (97)
+...|.+.|.++| |..+.-+.+. +.-+..+ ....-..++ -.|+.++||.||--
T Consensus 28 l~~~L~~~F~~~G~Vi~vr~~~d~-------~fVtF~d-~~sAlaAi~--mnG~~v~Gr~LkV~ 81 (91)
T 2dnr_A 28 LIDELLQQFASFGEVILIRFVEDK-------MWVTFLE-GSSALNVLS--LNGKELLNRTITIA 81 (91)
T ss_dssp HHHHHHHHHHTTCCEEEEEECSSS-------EEEEESS-HHHHHHGGG--GTTCEETTEEEEEE
T ss_pred HHHHHHHHHHhCCCeEEEEEecCC-------EEEEECC-hHHHHHHHh--cCCeEeCCeEEEEE
Confidence 4457899999999 4444434432 2222222 111223334 78999999998743
No 8
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=24.62 E-value=14 Score=21.87 Aligned_cols=59 Identities=17% Similarity=0.034 Sum_probs=31.5
Q ss_pred HHHHHHHHHHhCCCeeeCCCCCCCCcccc--eeeeEeecCCCCCCeeEEEEecCeeeCCEEeee
Q psy2068 28 MKWKQANVFKRHGLEPINPLGEKFDPNFH--EALFEQEVEGKEANTVVVVSKIGYKLYNRVIRP 89 (97)
Q Consensus 28 i~~~l~~~L~~~Gv~~i~~~G~~FDP~~H--eAv~~~~~~~~~~gtV~~V~~~GY~~~~rvLRp 89 (97)
..+.|.++|+++||..+...-++-.+..+ -|.-...+.+.. ...+ ...|..++||.|+.
T Consensus 28 t~~~l~~~F~~~Gi~~v~i~~~~~~~g~~~g~afV~f~~~~~a-~~A~--~l~g~~~~g~~l~V 88 (104)
T 1wi8_A 28 TEESIKEFFRGLNISAVRLPREPSNPERLKGFGYAEFEDLDSL-LSAL--SLNEESLGNKRIRV 88 (104)
T ss_dssp CHHHHHHHTTTSCEEEEECCBCSSCTTSBCSCEEEEESSHHHH-HHHH--GGGTCEETTEECEE
T ss_pred CHHHHHHHHHHCCceEEEEecCCCCCCCcCeEEEEEECCHHHH-HHHH--hcCCCEeCCcEEEE
Confidence 35678899999997776654332211222 233233222211 1112 45788889987753
No 9
>3tu3_A EXOU chaperone, SPCU; type III secretion system, SPC infectious diseases, structural genomics, center for struct genomics of infectious diseases, csgid; 1.92A {Pseudomonas aeruginosa} PDB: 4akx_A*
Probab=22.99 E-value=20 Score=24.31 Aligned_cols=14 Identities=14% Similarity=0.150 Sum_probs=8.0
Q ss_pred CCeeEEEEecCeee
Q psy2068 69 ANTVVVVSKIGYKL 82 (97)
Q Consensus 69 ~gtV~~V~~~GY~~ 82 (97)
+..+.+-+.-||.+
T Consensus 53 Pe~~mER~e~~~L~ 66 (161)
T 3tu3_A 53 PELVMERLEGGWLF 66 (161)
T ss_dssp CCEEEEEETTEEEE
T ss_pred cHHHHHHhcCCeEE
Confidence 44566666666654
No 10
>2lkt_A Retinoic acid receptor responder protein 3; TIG3, human tumor suppressor II family, NLPC/P60, hydrolase; NMR {Homo sapiens}
Probab=20.61 E-value=63 Score=20.29 Aligned_cols=27 Identities=15% Similarity=0.294 Sum_probs=19.7
Q ss_pred ecCCCCCCeeEEEEecCeee------CCEEeee
Q psy2068 63 EVEGKEANTVVVVSKIGYKL------YNRVIRP 89 (97)
Q Consensus 63 ~~~~~~~gtV~~V~~~GY~~------~~rvLRp 89 (97)
+.++.++|.++++.+.+|.. +|+|+..
T Consensus 4 ~~~ep~pGDlI~~~r~~Y~H~gIYvGdg~ViH~ 36 (125)
T 2lkt_A 4 PHQEPKPGDLIEIFRLGYEHWALYIGDGYVIHL 36 (125)
T ss_dssp SSCCCCTTCEEEEECSSSCEEEEEEETTEEEEE
T ss_pred CCCCCCCCCEEEEeCCCccEEEEEeCCCeEEEE
Confidence 34556789999999999886 4566653
Done!