RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy2068
(97 letters)
>gnl|CDD|238252 cd00446, GrpE, GrpE is the adenine nucleotide exchange factor of
DnaK (Hsp70)-type ATPases. The GrpE dimer binds to the
ATPase domain of Hsp70 catalyzing the dissociation of
ADP, which enables rebinding of ATP, one step in the
Hsp70 reaction cycle in protein folding. In eukaryotes,
only the mitochondrial Hsp70, not the cytosolic form, is
GrpE dependent.
Length = 137
Score = 101 bits (253), Expect = 4e-29
Identities = 30/61 (49%), Positives = 41/61 (67%)
Query: 34 NVFKRHGLEPINPLGEKFDPNFHEALFEQEVEGKEANTVVVVSKIGYKLYNRVIRPALVG 93
+V ++HG+E I P GE FDPN HEA+ + E TVV V + GYKL +RV+RPA+V
Sbjct: 77 DVLEKHGVEKIEPEGEPFDPNLHEAVMQVPSPDVEPGTVVEVLQKGYKLGDRVLRPAMVV 136
Query: 94 I 94
+
Sbjct: 137 V 137
>gnl|CDD|216249 pfam01025, GrpE, GrpE.
Length = 165
Score = 99.2 bits (248), Expect = 5e-28
Identities = 32/63 (50%), Positives = 44/63 (69%)
Query: 34 NVFKRHGLEPINPLGEKFDPNFHEALFEQEVEGKEANTVVVVSKIGYKLYNRVIRPALVG 93
V ++HG+E I P GE FDPN HEA+ + + K TVV V + GYKL++RV+RPA+V
Sbjct: 103 KVLEKHGVEKIEPEGEPFDPNLHEAVSQVPSDEKPPGTVVEVLQKGYKLHDRVLRPAMVV 162
Query: 94 ISK 96
+SK
Sbjct: 163 VSK 165
>gnl|CDD|223649 COG0576, GrpE, Molecular chaperone GrpE (heat shock protein)
[Posttranslational modification, protein turnover,
chaperones].
Length = 193
Score = 95.5 bits (238), Expect = 3e-26
Identities = 33/64 (51%), Positives = 44/64 (68%)
Query: 34 NVFKRHGLEPINPLGEKFDPNFHEALFEQEVEGKEANTVVVVSKIGYKLYNRVIRPALVG 93
+ ++ G+E I P GEKFDPN HEA+ E E E NTVV V + GYKL +RV+RPA+V
Sbjct: 129 DALEKLGVEEIGPEGEKFDPNLHEAVQRVESEDVEPNTVVEVLQKGYKLNDRVLRPAMVK 188
Query: 94 ISKS 97
++K
Sbjct: 189 VAKK 192
>gnl|CDD|172630 PRK14141, PRK14141, heat shock protein GrpE; Provisional.
Length = 209
Score = 79.7 bits (197), Expect = 5e-20
Identities = 31/63 (49%), Positives = 45/63 (71%)
Query: 34 NVFKRHGLEPINPLGEKFDPNFHEALFEQEVEGKEANTVVVVSKIGYKLYNRVIRPALVG 93
N +RHG++ ++P G+KFDPNFH+A+FE NTVV V + GY + RV+RPA+VG
Sbjct: 129 NALERHGVKKLDPEGQKFDPNFHQAMFEVPNPDVPNNTVVQVVQAGYTIGERVLRPAMVG 188
Query: 94 ISK 96
++K
Sbjct: 189 VAK 191
>gnl|CDD|237621 PRK14139, PRK14139, heat shock protein GrpE; Provisional.
Length = 185
Score = 73.5 bits (181), Expect = 9e-18
Identities = 30/67 (44%), Positives = 44/67 (65%), Gaps = 2/67 (2%)
Query: 31 KQ-ANVFKRHGLEPINPLGEKFDPNFHEALFEQEVEGKEANTVVVVSKIGYKLYNRVIRP 89
KQ + F++ + INP+GEKFDP+ H+A+ E E NTVV V + GY + +RV+RP
Sbjct: 118 KQLTSAFEKGRVVEINPVGEKFDPHQHQAISMVPAEQ-EPNTVVAVLQKGYTIADRVLRP 176
Query: 90 ALVGISK 96
ALV ++
Sbjct: 177 ALVTVAA 183
>gnl|CDD|184539 PRK14150, PRK14150, heat shock protein GrpE; Provisional.
Length = 193
Score = 71.5 bits (176), Expect = 4e-17
Identities = 27/59 (45%), Positives = 41/59 (69%)
Query: 38 RHGLEPINPLGEKFDPNFHEALFEQEVEGKEANTVVVVSKIGYKLYNRVIRPALVGISK 96
+ G+E + P+GE F+P H+A+ QE E E NTV++V + GY L R++RPA+V +SK
Sbjct: 135 KFGVEVVGPVGEPFNPEVHQAISMQESEDHEPNTVMMVMQKGYTLNGRLLRPAMVMVSK 193
>gnl|CDD|237622 PRK14140, PRK14140, heat shock protein GrpE; Provisional.
Length = 191
Score = 71.2 bits (175), Expect = 7e-17
Identities = 28/59 (47%), Positives = 40/59 (67%)
Query: 34 NVFKRHGLEPINPLGEKFDPNFHEALFEQEVEGKEANTVVVVSKIGYKLYNRVIRPALV 92
K+ G+E I +GE+FDPN H+A+ + E E E+N VV + GYKL +RVIRP++V
Sbjct: 129 EALKKEGVEVIEAVGEQFDPNLHQAVMQDEDEDFESNEVVEELQKGYKLKDRVIRPSMV 187
>gnl|CDD|172640 PRK14151, PRK14151, heat shock protein GrpE; Provisional.
Length = 176
Score = 68.3 bits (167), Expect = 7e-16
Identities = 27/61 (44%), Positives = 41/61 (67%)
Query: 37 KRHGLEPINPLGEKFDPNFHEALFEQEVEGKEANTVVVVSKIGYKLYNRVIRPALVGISK 96
KR+ LE ++P GE F+P H+A+ QE E N+V+ V + GY L R++RPA+V +SK
Sbjct: 116 KRYQLEAVDPHGEPFNPEHHQAMAMQESADVEPNSVLKVFQKGYLLNGRLLRPAMVVVSK 175
Query: 97 S 97
+
Sbjct: 176 A 176
>gnl|CDD|237627 PRK14155, PRK14155, heat shock protein GrpE; Provisional.
Length = 208
Score = 64.6 bits (157), Expect = 3e-14
Identities = 26/61 (42%), Positives = 42/61 (68%), Gaps = 1/61 (1%)
Query: 36 FKRHGLEPINP-LGEKFDPNFHEALFEQEVEGKEANTVVVVSKIGYKLYNRVIRPALVGI 94
F+R+GL+ I+P G+KFDP+ H+A+ EQ A V+ V + GY+L R++RPA+V +
Sbjct: 110 FERNGLKKIDPAKGDKFDPHLHQAMMEQPSTEVAAGGVLQVMQAGYELMGRLVRPAMVAV 169
Query: 95 S 95
+
Sbjct: 170 A 170
>gnl|CDD|184540 PRK14153, PRK14153, heat shock protein GrpE; Provisional.
Length = 194
Score = 62.2 bits (151), Expect = 2e-13
Identities = 30/71 (42%), Positives = 46/71 (64%), Gaps = 1/71 (1%)
Query: 28 MKWKQ-ANVFKRHGLEPINPLGEKFDPNFHEALFEQEVEGKEANTVVVVSKIGYKLYNRV 86
M KQ ++ +++GLE I GE+FDP+ HEA+ E NT+V V K GY L ++V
Sbjct: 118 MVSKQFFSILEKYGLERIECEGEEFDPHRHEAMMHVETSEVPDNTIVDVCKPGYALNSKV 177
Query: 87 IRPALVGISKS 97
IRPA+V ++++
Sbjct: 178 IRPAMVSVARN 188
>gnl|CDD|184535 PRK14144, PRK14144, heat shock protein GrpE; Provisional.
Length = 199
Score = 61.7 bits (149), Expect = 3e-13
Identities = 28/63 (44%), Positives = 40/63 (63%)
Query: 34 NVFKRHGLEPINPLGEKFDPNFHEALFEQEVEGKEANTVVVVSKIGYKLYNRVIRPALVG 93
+ ++ +E I+PLG+ FDP HEA+ Q G N+V+ V + GYKL +RVIRPA V
Sbjct: 136 DALQKFDVEQIDPLGQTFDPQQHEAMSMQPAPGAPPNSVITVFQKGYKLSDRVIRPARVI 195
Query: 94 ISK 96
+S
Sbjct: 196 VST 198
>gnl|CDD|184538 PRK14149, PRK14149, heat shock protein GrpE; Provisional.
Length = 191
Score = 60.7 bits (147), Expect = 7e-13
Identities = 31/63 (49%), Positives = 41/63 (65%), Gaps = 1/63 (1%)
Query: 35 VFKRHGLEPINPLGEKFDPNFHEALFEQEVEGKEANTVVVVSKIGYKLYNRVIRPALVGI 94
V RHG+E I L E FDPNFH A+ + + E KE +V V + GYK RV+RPA+V I
Sbjct: 129 VLARHGIEGIECLEE-FDPNFHNAIMQVKSEEKENGKIVQVLQQGYKYKGRVLRPAMVSI 187
Query: 95 SKS 97
+K+
Sbjct: 188 AKN 190
>gnl|CDD|184536 PRK14145, PRK14145, heat shock protein GrpE; Provisional.
Length = 196
Score = 56.5 bits (136), Expect = 3e-11
Identities = 25/62 (40%), Positives = 42/62 (67%)
Query: 35 VFKRHGLEPINPLGEKFDPNFHEALFEQEVEGKEANTVVVVSKIGYKLYNRVIRPALVGI 94
+ + G++ I G+ FDP H A+ ++EVEGK+ N ++ V + GY L ++VIRP+LV +
Sbjct: 135 ILDKFGVKEIEAEGQIFDPYKHHAVMQEEVEGKQPNEIIEVFQKGYYLKDKVIRPSLVKV 194
Query: 95 SK 96
+K
Sbjct: 195 AK 196
>gnl|CDD|237625 PRK14147, PRK14147, heat shock protein GrpE; Provisional.
Length = 172
Score = 55.0 bits (132), Expect = 7e-11
Identities = 24/58 (41%), Positives = 38/58 (65%)
Query: 39 HGLEPINPLGEKFDPNFHEALFEQEVEGKEANTVVVVSKIGYKLYNRVIRPALVGISK 96
+GL ++P+G+ F+P H+A+ + E EG VV V + GY L R++RPALV ++K
Sbjct: 113 NGLTLLDPVGQPFNPEHHQAISQGEAEGVAPGHVVQVFQKGYLLNERLLRPALVVVAK 170
>gnl|CDD|172647 PRK14159, PRK14159, heat shock protein GrpE; Provisional.
Length = 176
Score = 54.7 bits (131), Expect = 1e-10
Identities = 26/61 (42%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 36 FKRHGLEPINPLGEKFDPNFHEALFEQEVEGKEANTVVVVSKIGYKLYNRVIRPALVGIS 95
++HG+ I E FDPN HEA+F + E ++ VV V + GYK+ +RVIRP V ++
Sbjct: 117 LEKHGVALIKEEKE-FDPNLHEAMFHVDSENHQSGEVVQVLQKGYKIADRVIRPTKVSVA 175
Query: 96 K 96
K
Sbjct: 176 K 176
>gnl|CDD|172646 PRK14158, PRK14158, heat shock protein GrpE; Provisional.
Length = 194
Score = 54.9 bits (132), Expect = 1e-10
Identities = 24/61 (39%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 37 KRHGLEPIN-PLGEKFDPNFHEALFEQEVEGKEANTVVVVSKIGYKLYNRVIRPALVGIS 95
K+ G+ P+ G FDP +H+A+ + E +E NTVV V + GY L R++RPA+V ++
Sbjct: 134 KKFGVTPVEAEKGTPFDPAYHQAMCQVESAEQEPNTVVAVFQKGYLLNERLLRPAMVSVA 193
Query: 96 K 96
Sbjct: 194 T 194
>gnl|CDD|237624 PRK14143, PRK14143, heat shock protein GrpE; Provisional.
Length = 238
Score = 55.5 bits (134), Expect = 1e-10
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 30 WKQ-ANVFKRHGLEPINPLGEKFDPNFHEALFEQEVEGKEANTVVVVSKIGYKLYNRVIR 88
+KQ +V KR G+ P+ +G++FDPN HEA+ + + + V+ + GY L RV+R
Sbjct: 155 YKQLVDVLKRLGVSPMRVVGQEFDPNLHEAVLREPSDEHPEDVVLEELQRGYHLGGRVLR 214
Query: 89 PALVGIS 95
A+V +S
Sbjct: 215 HAMVKVS 221
>gnl|CDD|237631 PRK14162, PRK14162, heat shock protein GrpE; Provisional.
Length = 194
Score = 54.1 bits (130), Expect = 2e-10
Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 37 KRHGLEPINPLGEKFDPNFHEALFEQEVEGKE-ANTVVVVSKIGYKLYNRVIRPALV 92
K HG+ I GEKFDP H+A+ E + + VV V + GY+ +R +RPA+V
Sbjct: 134 KDHGVTEIKADGEKFDPTLHQAVQTVAAENDDQKDHVVQVLQKGYQYKDRTLRPAMV 190
>gnl|CDD|172637 PRK14148, PRK14148, heat shock protein GrpE; Provisional.
Length = 195
Score = 53.6 bits (128), Expect = 3e-10
Identities = 27/64 (42%), Positives = 40/64 (62%)
Query: 34 NVFKRHGLEPINPLGEKFDPNFHEALFEQEVEGKEANTVVVVSKIGYKLYNRVIRPALVG 93
++ K++G+E ++P GEKFDPN HEA+ E NT+ V + GY L R++R A V
Sbjct: 132 DILKKNGVEELDPKGEKFDPNLHEAMAMIPNPEFEDNTIFDVFQKGYMLNGRIVRAAKVV 191
Query: 94 ISKS 97
I K+
Sbjct: 192 IVKN 195
>gnl|CDD|237630 PRK14161, PRK14161, heat shock protein GrpE; Provisional.
Length = 178
Score = 51.9 bits (124), Expect = 1e-09
Identities = 23/63 (36%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 35 VFKRHGLEPINP-LGEKFDPNFHEALFEQEVEGKEANTVVVVSKIGYKLYNRVIRPALVG 93
VF +H +E I P +G FD N H A+ + E N+++ + + GYK+ +R++RPA V
Sbjct: 114 VFHKHHIEEIKPEIGSMFDYNLHNAISQIEHPDHAPNSIITLMQSGYKIRDRLLRPATVQ 173
Query: 94 ISK 96
+ K
Sbjct: 174 VVK 176
>gnl|CDD|237626 PRK14154, PRK14154, heat shock protein GrpE; Provisional.
Length = 208
Score = 50.6 bits (120), Expect = 6e-09
Identities = 25/60 (41%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 34 NVFKRHGLEPINP-LGEKFDPNFHEALFEQEVEGKEANTVVVVSKIGYKLYNRVIRPALV 92
N +HG++ INP G+ FDP HEA+ Q V + +T++ V + GY+L RV+R A V
Sbjct: 145 NTLAKHGVQVINPNPGDPFDPALHEAMSVQAVPDAKPDTIIQVLQKGYQLNGRVLRAARV 204
>gnl|CDD|184546 PRK14163, PRK14163, heat shock protein GrpE; Provisional.
Length = 214
Score = 45.9 bits (108), Expect = 2e-07
Identities = 21/57 (36%), Positives = 29/57 (50%)
Query: 40 GLEPINPLGEKFDPNFHEALFEQEVEGKEANTVVVVSKIGYKLYNRVIRPALVGISK 96
GL+ GE FDP HEAL T V + + GY++ R IRPA V +++
Sbjct: 131 GLQQFGKEGEPFDPTIHEALMHSYAPDVTETTCVAILQPGYRIGERTIRPARVAVAE 187
>gnl|CDD|237632 PRK14164, PRK14164, heat shock protein GrpE; Provisional.
Length = 218
Score = 45.9 bits (109), Expect = 3e-07
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 31 KQANVFKRHGLEPINPLGEKFDPNFHEALFEQEVEGKEANTVVVVSKIGYKLYNRVIRPA 90
K NV +E G+ FDP HEA+ Q++ + + V + GY++ +RV+R A
Sbjct: 153 KLTNVLAGLKVEKFGEEGDAFDPEIHEAV--QDLSSGDEKVLGTVLRKGYRMGDRVLRTA 210
Query: 91 LVGI 94
+V I
Sbjct: 211 MVII 214
>gnl|CDD|184543 PRK14157, PRK14157, heat shock protein GrpE; Provisional.
Length = 227
Score = 46.1 bits (109), Expect = 3e-07
Identities = 28/87 (32%), Positives = 41/87 (47%), Gaps = 13/87 (14%)
Query: 10 MSDSYLAQLT-IDYSFVCRMKWKQANVFKRHGLEPINPLGEKFDPNFHEALFEQEVEGKE 68
M DS+ A ID F++ G+E GE FDP H+A+ + E
Sbjct: 149 MDDSFKAVAAKID------------KAFEKFGVEKFGEKGEDFDPTKHDAILHKPDPDAE 196
Query: 69 ANTVVVVSKIGYKLYNRVIRPALVGIS 95
TV V + GY++ +RVIR A V ++
Sbjct: 197 KETVDTVVEAGYRIGDRVIRAARVVVA 223
>gnl|CDD|237623 PRK14142, PRK14142, heat shock protein GrpE; Provisional.
Length = 223
Score = 44.6 bits (105), Expect = 8e-07
Identities = 23/57 (40%), Positives = 34/57 (59%), Gaps = 3/57 (5%)
Query: 40 GLEPINPLGEKFDPNFHEALFEQEVEGKEANTVVV--VSKIGYKLYNRVIRPALVGI 94
GL GE FDP HEA+ + E +G + + V+ V + GY+L +V+R ALVG+
Sbjct: 125 GLVAFGAEGEDFDPVLHEAV-QHEGDGGQGSKPVIGTVMRQGYQLGEQVLRHALVGV 180
>gnl|CDD|182379 PRK10325, PRK10325, heat shock protein GrpE; Provisional.
Length = 197
Score = 44.3 bits (104), Expect = 1e-06
Identities = 20/64 (31%), Positives = 34/64 (53%)
Query: 34 NVFKRHGLEPINPLGEKFDPNFHEALFEQEVEGKEANTVVVVSKIGYKLYNRVIRPALVG 93
+V ++ G+E I DPN H+A+ E + V+ + + GY L R IR A+V
Sbjct: 132 DVVRKFGVEVIAETNVPLDPNVHQAIAMVESDDVAPGNVLGIMQKGYTLNGRTIRAAMVT 191
Query: 94 ISKS 97
++K+
Sbjct: 192 VAKA 195
>gnl|CDD|237629 PRK14160, PRK14160, heat shock protein GrpE; Provisional.
Length = 211
Score = 42.4 bits (100), Expect = 4e-06
Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Query: 28 MKWKQ-ANVFKRHGLEPINPLGEKFDPNFHEALFEQEVEGKEANTVVVVSKIGYKLYNRV 86
M KQ ++ G+E I +FDPN H A+ E E N +V V + GYK ++V
Sbjct: 143 MTVKQFKTSLEKLGVEEI-STEGEFDPNLHNAVMHVEDENYGENEIVEVFQKGYKRGDKV 201
Query: 87 IRPALVGISK 96
IR ++V ++
Sbjct: 202 IRYSMVKVAN 211
>gnl|CDD|237628 PRK14156, PRK14156, heat shock protein GrpE; Provisional.
Length = 177
Score = 42.1 bits (99), Expect = 5e-06
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 7/62 (11%)
Query: 34 NVFKRHGLEPINPLGEKFDPNFHEALFEQEVEGKE---ANTVVVVSKIGYKLYNRVIRPA 90
K G+E + + FD N H A+ Q + + A+++ V + GYKL+ R++RPA
Sbjct: 116 QALKEEGVEEVA--VDSFDHNLHMAV--QTLPADDEHPADSIAQVFQKGYKLHERLLRPA 171
Query: 91 LV 92
+V
Sbjct: 172 MV 173
>gnl|CDD|172635 PRK14146, PRK14146, heat shock protein GrpE; Provisional.
Length = 215
Score = 33.9 bits (77), Expect = 0.006
Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 8/68 (11%)
Query: 35 VFKRHGLEPINPLGEKFDPNFHEALFEQEVEGKEANTVVVVSKIGYKLYNR------VIR 88
V ++ + +P GE FDP EAL +E + TV+ V + GY Y + +R
Sbjct: 147 VLEKSNVIRFDPKGEPFDPMSMEALSSEEGDQYSEETVIDVYQAGY--YYKENEDKFTLR 204
Query: 89 PALVGISK 96
PA V I K
Sbjct: 205 PARVRIGK 212
>gnl|CDD|239000 cd02045, antithrombin-III_like, Antithrombin is a serine proteinase
inhibitor (serpin) which controls the process of
coagulation. It is the most important anticoagulant
molecule in mammalian circulation systems, controlled by
its interaction with the co-factor, heparin, which
accelerates its interaction with target proteases, such
as thrombin and factor Xa. This subgroup corresponds to
clade C of the serpin superfamily.
Length = 381
Score = 27.9 bits (62), Expect = 0.81
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 5/48 (10%)
Query: 55 FHEALFEQEVEGKEANTVVVVSKIGYKL-YNRVI----RPALVGISKS 97
FH+A E EG EA+ V G L NR+I RP L+ I +
Sbjct: 323 FHKAFLEVNEEGSEASAATAVVITGRSLNINRIIFVANRPFLLFIREV 370
>gnl|CDD|235010 PRK02186, PRK02186, argininosuccinate lyase; Provisional.
Length = 887
Score = 27.5 bits (61), Expect = 1.0
Identities = 6/17 (35%), Positives = 9/17 (52%)
Query: 25 VCRMKWKQANVFKRHGL 41
CR K + A + HG+
Sbjct: 104 TCRDKKRLARTLRDHGI 120
>gnl|CDD|215739 pfam00133, tRNA-synt_1, tRNA synthetases class I (I, L, M and V).
Other tRNA synthetase sub-families are too dissimilar to
be included.
Length = 606
Score = 26.6 bits (59), Expect = 2.0
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 5/43 (11%)
Query: 34 NVFKRHGLEPINPLGEK--FDPNFHEALFEQEVEGKEANTVVV 74
V KRH LE INP+ + ++ E Q ++ +A +V
Sbjct: 308 EVGKRHNLEFINPVDDDGTYNEEAPEF---QGLKRFKARKKIV 347
>gnl|CDD|223446 COG0369, CysJ, Sulfite reductase, alpha subunit (flavoprotein)
[Inorganic ion transport and metabolism].
Length = 587
Score = 26.6 bits (59), Expect = 2.4
Identities = 8/40 (20%), Positives = 12/40 (30%)
Query: 22 YSFVCRMKWKQANVFKRHGLEPINPLGEKFDPNFHEALFE 61
Y F C+ + G + P E +F A
Sbjct: 144 YEFFCQAGKDFDRRLQELGATRLFPRVEADVQDFEAAAAP 183
>gnl|CDD|177613 PHA03376, PHA03376, BARF1; Provisional.
Length = 221
Score = 25.8 bits (56), Expect = 3.7
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 16 AQLTIDYSFVCRMKWKQANVFKRHGLEPINPL 47
A ++ D +++CRMK + V K+ L + PL
Sbjct: 94 ANISHDGNYLCRMKLGETEVTKQEHLSVVKPL 125
>gnl|CDD|235588 PRK05743, ileS, isoleucyl-tRNA synthetase; Reviewed.
Length = 912
Score = 25.8 bits (58), Expect = 4.8
Identities = 10/44 (22%), Positives = 20/44 (45%), Gaps = 7/44 (15%)
Query: 34 NVFKRHGLEPINPLGEK--FDPNFHEALFE-QEVEGKEANTVVV 74
V +++GLE +NP+ + + F V +AN ++
Sbjct: 337 VVGQKYGLEVLNPVDDDGRYTEEAPL--FAGLFVF--KANPKII 376
>gnl|CDD|222651 pfam14286, DHHW, DHHW protein. This family of proteins is found in
bacteria. Proteins in this family are typically between
366 and 404 amino acids in length. There is a conserved
DHHW motif.
Length = 378
Score = 25.4 bits (56), Expect = 4.8
Identities = 10/43 (23%), Positives = 15/43 (34%)
Query: 42 EPINPLGEKFDPNFHEALFEQEVEGKEANTVVVVSKIGYKLYN 84
DP+ + +V+G+ N V V Y LY
Sbjct: 105 SSAETTVIPVDPDDSVVFDDGKVQGEIQNGVYVYGGRAYSLYY 147
>gnl|CDD|183198 PRK11560, PRK11560, phosphoethanolamine transferase; Provisional.
Length = 558
Score = 25.0 bits (55), Expect = 8.5
Identities = 7/9 (77%), Positives = 7/9 (77%)
Query: 9 WMSDSYLAQ 17
WMSD YLA
Sbjct: 495 WMSDKYLAN 503
>gnl|CDD|226402 COG3885, COG3885, Uncharacterized conserved protein [Function
unknown].
Length = 261
Score = 24.7 bits (54), Expect = 9.8
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 39 HGLEPINPLGEKFDPNFHEALFEQEVEGKEANTVVVVS 76
HG E I+P E+ ++A+ E + K + T VV+S
Sbjct: 10 HGDEIIDPEDEE-SRKLNKAIKEIASDDKGSETYVVIS 46
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.136 0.411
Gapped
Lambda K H
0.267 0.0686 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,982,243
Number of extensions: 407311
Number of successful extensions: 342
Number of sequences better than 10.0: 1
Number of HSP's gapped: 334
Number of HSP's successfully gapped: 43
Length of query: 97
Length of database: 10,937,602
Length adjustment: 64
Effective length of query: 33
Effective length of database: 8,098,946
Effective search space: 267265218
Effective search space used: 267265218
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.3 bits)