RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy2068
         (97 letters)



>1dkg_A Nucleotide exchange factor GRPE; HSP70, GRPE, nucleotide exchange
           factor, coiled-coil, complex (HSP24/HSP70); 2.80A
           {Escherichia coli} SCOP: b.73.1.1 h.1.9.1
          Length = 197

 Score =  106 bits (266), Expect = 1e-30
 Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 1/70 (1%)

Query: 28  MKWKQ-ANVFKRHGLEPINPLGEKFDPNFHEALFEQEVEGKEANTVVVVSKIGYKLYNRV 86
           +  K   +V ++ G+E I       DPN H+A+   E +      V+ + + GY L  R 
Sbjct: 125 LTLKSMLDVVRKFGVEVIAETNVPLDPNVHQAIAMVESDDVAPGNVLGIMQKGYTLNGRT 184

Query: 87  IRPALVGISK 96
           IR A+V ++K
Sbjct: 185 IRAAMVTVAK 194


>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A
           {Geobacillus kaustophilus}
          Length = 213

 Score =  102 bits (255), Expect = 6e-29
 Identities = 30/70 (42%), Positives = 46/70 (65%), Gaps = 1/70 (1%)

Query: 28  MKWKQ-ANVFKRHGLEPINPLGEKFDPNFHEALFEQEVEGKEANTVVVVSKIGYKLYNRV 86
           M ++   +  K+ G+E I  +G+ FDP  H+A+ + E EG E NTVV   + GYKL +RV
Sbjct: 144 MVYRSLVDALKKEGVEAIEAVGKPFDPYLHQAVMQAEAEGYEPNTVVEELQKGYKLKDRV 203

Query: 87  IRPALVGISK 96
           +RPA+V +S+
Sbjct: 204 LRPAMVKVSQ 213


>3a6m_A Protein GRPE, HSP-70 cofactor; coiled-coil, four-helix bundle,
           dimer, chaperone, STRE response; 3.23A {Thermus
           thermophilus}
          Length = 177

 Score = 89.3 bits (222), Expect = 2e-24
 Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 3/63 (4%)

Query: 34  NVFKRHGLEPINPLGEKFDPNFHEALFEQEVEGKEANTVVVVSKIGYKLYNRVIRPALVG 93
            +    G+E +   GE FDP +HEA+        E   V  V + G+++   ++RPA V 
Sbjct: 109 RILAGLGVEEVPGEGEAFDPRYHEAVGLLP---GEPGKVAKVFQRGFRMGEALVRPARVA 165

Query: 94  ISK 96
           + +
Sbjct: 166 VGE 168


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 27.5 bits (60), Expect = 0.70
 Identities = 10/53 (18%), Positives = 18/53 (33%), Gaps = 2/53 (3%)

Query: 7   KNWMSDSYLAQLTIDYSFVCRMKW-KQANVFKRHG-LEPINPLGEKFDPNFHE 57
           K W++        +      ++ W    N       LE +  L  + DPN+  
Sbjct: 163 KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTS 215


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
            acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
            synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 26.9 bits (59), Expect = 0.99
 Identities = 21/122 (17%), Positives = 41/122 (33%), Gaps = 36/122 (29%)

Query: 6    QKNWMS-DSYLAQLTIDYSFVCRMKWKQANVFKRH--GLEPI-----NPL---------- 47
            Q+  M  D Y        S   +  W +A+   +   G   +     NP+          
Sbjct: 1627 QEQGMGMDLY------KTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEK 1680

Query: 48   GEKFDPNFHEALFEQEVEGKEANTVV------VVSKIGYKLYNRVIR------PALVGIS 95
            G++   N+   +FE  V+GK     +        +   ++    ++       PAL  + 
Sbjct: 1681 GKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLME 1740

Query: 96   KS 97
            K+
Sbjct: 1741 KA 1742


>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer,
           oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
          Length = 689

 Score = 25.3 bits (55), Expect = 3.9
 Identities = 7/30 (23%), Positives = 13/30 (43%)

Query: 51  FDPNFHEALFEQEVEGKEANTVVVVSKIGY 80
           +    H  L E  ++GK    ++   K G+
Sbjct: 301 YTATQHMILAELPIDGKPRKVLMQAPKNGF 330


>1wny_A Isoleucyl-tRNA synthetase; ligase, structural genomics, NPPSFA,
           national project on protein structural and functional
           analyses; 1.60A {Thermus thermophilus} PDB: 1wnz_A*
           1wk8_A* 1udz_A 1ue0_A
          Length = 186

 Score = 24.8 bits (55), Expect = 4.3
 Identities = 7/42 (16%), Positives = 16/42 (38%), Gaps = 5/42 (11%)

Query: 34  NVFKRHGLEPINPLGEKFDPNFHEALFE-QEVEGKEANTVVV 74
              + +GL  +  + E  +       F+      +EAN  ++
Sbjct: 131 ETARVYGLPLLKTVDE--EGKLLVEPFKGLYF--REANRAIL 168


>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer,
           oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas
           putida} SCOP: a.3.1.6 b.70.1.1
          Length = 668

 Score = 25.3 bits (55), Expect = 4.7
 Identities = 7/30 (23%), Positives = 12/30 (40%)

Query: 51  FDPNFHEALFEQEVEGKEANTVVVVSKIGY 80
           F       L E  ++GK    ++   K G+
Sbjct: 296 FTATQQITLAELNIDGKPRKVLMQAPKNGF 325


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.321    0.136    0.411 

Gapped
Lambda     K      H
   0.267   0.0675    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,527,161
Number of extensions: 77880
Number of successful extensions: 172
Number of sequences better than 10.0: 1
Number of HSP's gapped: 171
Number of HSP's successfully gapped: 17
Length of query: 97
Length of database: 6,701,793
Length adjustment: 63
Effective length of query: 34
Effective length of database: 4,942,770
Effective search space: 168054180
Effective search space used: 168054180
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.5 bits)