RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2068
         (97 letters)



>d1dkga1 b.73.1.1 (A:139-197) Head domain of nucleotide exchange
          factor GrpE {Escherichia coli [TaxId: 562]}
          Length = 59

 Score = 86.2 bits (214), Expect = 9e-25
 Identities = 18/56 (32%), Positives = 28/56 (50%)

Query: 41 LEPINPLGEKFDPNFHEALFEQEVEGKEANTVVVVSKIGYKLYNRVIRPALVGISK 96
          +E I       DPN H+A+   E +      V+ + + GY L  R IR A+V ++K
Sbjct: 1  VEVIAETNVPLDPNVHQAIAMVESDDVAPGNVLGIMQKGYTLNGRTIRAAMVTVAK 56


>d2asba2 d.52.3.1 (A:184-262) Transcription factor NusA,
          C-terminal domains {Mycobacterium tuberculosis [TaxId:
          1773]}
          Length = 79

 Score = 23.5 bits (51), Expect = 3.1
 Identities = 12/52 (23%), Positives = 17/52 (32%), Gaps = 11/52 (21%)

Query: 53 PNFHEALFEQEVEGKEANTVVV---------VSKIGYKLYNRVIRP--ALVG 93
          PN    LF  EV      +V +          SKI  +     +    A +G
Sbjct: 3  PNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNVAGLNAKGACIG 54


>d1v29b_ b.34.4.4 (B:) Cobalt-containing nitrile hydratase
          {Bacillus smithii [TaxId: 1479]}
          Length = 229

 Score = 23.4 bits (50), Expect = 6.0
 Identities = 5/20 (25%), Positives = 7/20 (35%)

Query: 38 RHGLEPINPLGEKFDPNFHE 57
            G   I  + E+ D  F  
Sbjct: 10 MDGFGKIMYVKEEEDTYFKH 29


>d1hh2p2 d.52.3.1 (P:199-276) Transcription factor NusA,
          C-terminal domains {Thermotoga maritima [TaxId: 2336]}
          Length = 78

 Score = 22.7 bits (49), Expect = 6.2
 Identities = 4/12 (33%), Positives = 6/12 (50%)

Query: 53 PNFHEALFEQEV 64
          P F   L + E+
Sbjct: 3  PEFVIGLMKLEI 14


>d1l1pa_ d.26.1.1 (A:) Trigger factor PPIase domain {Escherichia
          coli [TaxId: 562]}
          Length = 106

 Score = 22.6 bits (48), Expect = 7.5
 Identities = 7/29 (24%), Positives = 13/29 (44%)

Query: 50 KFDPNFHEALFEQEVEGKEANTVVVVSKI 78
            D  F E    + ++GK A   + + K+
Sbjct: 69 TIDVTFPEEYHAENLKGKAAKFAINLKKV 97


>d1bd0a1 b.49.2.2 (A:2-11,A:245-382) Alanine racemase {Bacillus
           stearothermophilus [TaxId: 1422]}
          Length = 148

 Score = 22.6 bits (48), Expect = 8.9
 Identities = 10/32 (31%), Positives = 17/32 (53%), Gaps = 2/32 (6%)

Query: 19  TIDYSFVCRMKWKQANVFKRHG--LEPINPLG 48
           TI+Y   C + ++   +F RH   +E  N +G
Sbjct: 117 TINYEVPCTISYRVPRIFFRHKRIMEVRNAIG 148


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.136    0.411 

Gapped
Lambda     K      H
   0.267   0.0696    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 379,186
Number of extensions: 15338
Number of successful extensions: 45
Number of sequences better than 10.0: 1
Number of HSP's gapped: 45
Number of HSP's successfully gapped: 8
Length of query: 97
Length of database: 2,407,596
Length adjustment: 59
Effective length of query: 38
Effective length of database: 1,597,526
Effective search space: 60705988
Effective search space used: 60705988
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (21.9 bits)