BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy207
(109 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3II0|A Chain A, Crystal Structure Of Human Glutamate Oxaloacetate
Transaminase 1 (Got1)
pdb|3II0|B Chain B, Crystal Structure Of Human Glutamate Oxaloacetate
Transaminase 1 (Got1)
pdb|3II0|C Chain C, Crystal Structure Of Human Glutamate Oxaloacetate
Transaminase 1 (Got1)
pdb|3II0|D Chain D, Crystal Structure Of Human Glutamate Oxaloacetate
Transaminase 1 (Got1)
Length = 422
Score = 106 bits (265), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 49/69 (71%), Positives = 58/69 (84%), Gaps = 1/69 (1%)
Query: 40 GCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQS 99
G DPT +QWKQ+A + K R LF FFDSAYQGFASG+LERDA+A+RYF EGFEF C+QS
Sbjct: 186 GIDPTPEQWKQIASVMKHR-FLFPFFDSAYQGFASGNLERDAWAIRYFVSEGFEFFCAQS 244
Query: 100 FAKNFGLYS 108
F+KNFGLY+
Sbjct: 245 FSKNFGLYN 253
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 5/34 (14%)
Query: 15 PIEVFAVNKAYLDDPHPKKVNLSVGG-----CDP 43
P+ VF + + +DP P+KVNL VG C P
Sbjct: 3 PVLVFKLTADFREDPDPRKVNLGVGAYRTDDCHP 36
>pdb|1AAT|A Chain A, Oxoglutarate-Induced Conformational Changes In Cytosolic
Aspartate Aminotransferase
pdb|1AAT|B Chain B, Oxoglutarate-Induced Conformational Changes In Cytosolic
Aspartate Aminotransferase
Length = 411
Score = 105 bits (261), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 48/69 (69%), Positives = 57/69 (82%), Gaps = 1/69 (1%)
Query: 40 GCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQS 99
G DPT D+WKQ+A + K R LF FFDSAYQGFASG+LE+DA+AVRYF EGFE C+QS
Sbjct: 196 GTDPTPDEWKQIAAVMKRR-CLFPFFDSAYQGFASGNLEKDAWAVRYFVSEGFELFCAQS 254
Query: 100 FAKNFGLYS 108
F+KNFGLY+
Sbjct: 255 FSKNFGLYN 263
Score = 33.9 bits (76), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 6/63 (9%)
Query: 5 SSFSSVQQGPPIEVFAVNKAYLDDPHPKKVNLSVGGCDPTEDQ-W-----KQLAQLFKER 58
S F++V + PP+ VF + + +D +KVNL VG E Q W +++ QL
Sbjct: 3 SIFAAVPRAPPVAVFKLTADFREDGDSRKVNLGVGAYRTDEGQPWVLPVVRKVEQLIAGN 62
Query: 59 PSL 61
SL
Sbjct: 63 GSL 65
>pdb|1AJS|A Chain A, Refinement And Comparison Of The Crystal Structures Of Pig
Cytosolic Aspartate Aminotransferase And Its Complex
With 2-Methylaspartate
Length = 412
Score = 103 bits (256), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 47/69 (68%), Positives = 57/69 (82%), Gaps = 1/69 (1%)
Query: 40 GCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQS 99
G DPT +QWKQ+A + K R LF FFDSAYQGFASG+LE+DA+A+RYF EGFE C+QS
Sbjct: 197 GTDPTPEQWKQIASVMKRR-FLFPFFDSAYQGFASGNLEKDAWAIRYFVSEGFELFCAQS 255
Query: 100 FAKNFGLYS 108
F+KNFGLY+
Sbjct: 256 FSKNFGLYN 264
Score = 35.4 bits (80), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
Query: 5 SSFSSVQQGPPIEVFAVNKAYLDDPHPKKVNLSVGG-----CDP 43
S F+ V Q P+ VF + + +DP P+KVNL VG C P
Sbjct: 4 SVFAEVPQAQPVLVFKLIADFREDPDPRKVNLGVGAYRTDDCQP 47
>pdb|2CST|A Chain A, Crystal Structure Of The Closed Form Of Chicken Cytosolic
Aspartate Aminotransferase At 1.9 Angstroms Resolution
pdb|2CST|B Chain B, Crystal Structure Of The Closed Form Of Chicken Cytosolic
Aspartate Aminotransferase At 1.9 Angstroms Resolution
Length = 411
Score = 102 bits (255), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 47/69 (68%), Positives = 56/69 (81%), Gaps = 1/69 (1%)
Query: 40 GCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQS 99
G DPT D+WKQ+A + K R LF FFDSAYQGFASG L++DA+AVRYF EGFE C+QS
Sbjct: 196 GTDPTPDEWKQIAAVMKRR-CLFPFFDSAYQGFASGSLDKDAWAVRYFVSEGFELFCAQS 254
Query: 100 FAKNFGLYS 108
F+KNFGLY+
Sbjct: 255 FSKNFGLYN 263
Score = 33.9 bits (76), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 24/43 (55%)
Query: 5 SSFSSVQQGPPIEVFAVNKAYLDDPHPKKVNLSVGGCDPTEDQ 47
S F++V + PP+ VF + + +D +KVNL VG E Q
Sbjct: 3 SIFAAVPRAPPVAVFKLTADFREDGDSRKVNLGVGAYRTDEGQ 45
>pdb|1AJR|A Chain A, Refinement And Comparison Of The Crystal Structures Of Pig
Cytosolic Aspartate Aminotransferase And Its Complex
With 2-Methylaspartate
pdb|1AJR|B Chain B, Refinement And Comparison Of The Crystal Structures Of Pig
Cytosolic Aspartate Aminotransferase And Its Complex
With 2-Methylaspartate
pdb|1AJS|B Chain B, Refinement And Comparison Of The Crystal Structures Of Pig
Cytosolic Aspartate Aminotransferase And Its Complex
With 2-Methylaspartate
Length = 412
Score = 100 bits (250), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 46/69 (66%), Positives = 56/69 (81%), Gaps = 1/69 (1%)
Query: 40 GCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQS 99
G DPT +QWKQ+A + K R LF FFDSAYQGFASG+LE+DA+A+RYF EGFE C+QS
Sbjct: 197 GTDPTPEQWKQIASVMKRR-FLFPFFDSAYQGFASGNLEKDAWAIRYFVSEGFELFCAQS 255
Query: 100 FAKNFGLYS 108
F+ NFGLY+
Sbjct: 256 FSXNFGLYN 264
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
Query: 5 SSFSSVQQGPPIEVFAVNKAYLDDPHPKKVNLSVGG-----CDP 43
S F+ V Q P+ VF + + +DP P+KVNL VG C P
Sbjct: 4 SVFAEVPQAQPVLVFKLIADFREDPDPRKVNLGVGAYRTDDCQP 47
>pdb|7AAT|A Chain A, X-Ray Structure Refinement And Comparison Of Three Forms
Of Mitochondrial Aspartate Aminotransferase
pdb|7AAT|B Chain B, X-Ray Structure Refinement And Comparison Of Three Forms
Of Mitochondrial Aspartate Aminotransferase
pdb|8AAT|A Chain A, X-ray Structure Refinement And Comparison Of Three Forms
Of Mitochondrial Aspartate Aminotransferase
pdb|8AAT|B Chain B, X-ray Structure Refinement And Comparison Of Three Forms
Of Mitochondrial Aspartate Aminotransferase
pdb|9AAT|A Chain A, X-Ray Structure Refinement And Comparison Of Three Forms
Of Mitochondrial Aspartate Aminotransferase
pdb|9AAT|B Chain B, X-Ray Structure Refinement And Comparison Of Three Forms
Of Mitochondrial Aspartate Aminotransferase
pdb|1TAR|A Chain A, Crystalline Mitochondrial Aspartate Aminotransferase
Exists In Only Two Conformations
pdb|1TAR|B Chain B, Crystalline Mitochondrial Aspartate Aminotransferase
Exists In Only Two Conformations
pdb|1TAS|A Chain A, Crystalline Mitochondrial Aspartate Aminotransferase
Exists In Only Two Conformations
pdb|1TAS|B Chain B, Crystalline Mitochondrial Aspartate Aminotransferase
Exists In Only Two Conformations
pdb|1TAT|A Chain A, Crystalline Mitochondrial Aspartate Aminotransferase
Exists In Only Two Conformations
pdb|1TAT|B Chain B, Crystalline Mitochondrial Aspartate Aminotransferase
Exists In Only Two Conformations
pdb|1OXO|A Chain A, Aspartate Aminotransferase, H-Asp Complex, Open
Conformation
pdb|1OXO|B Chain B, Aspartate Aminotransferase, H-Asp Complex, Open
Conformation
pdb|1IVR|A Chain A, Structure Of Aspartate Aminotransferase
pdb|1AMA|A Chain A, Domain Closure In Mitochondrial Aspartate Aminotransferase
pdb|1MAP|A Chain A, Crystal Structures Of True Enzymatic Reaction
Intermediates: Aspartate And Glutamate Ketimines In
Aspartate Aminotransferase
pdb|1MAQ|A Chain A, Crystal Structures Of True Enzymatic Reaction
Intermediates: Aspartate And Glutamate Ketimines In
Aspartate Aminotransferase
pdb|1OXP|A Chain A, Aspartate Aminotransferase, H-Asp Complex, Closed
Conformation
Length = 401
Score = 88.2 bits (217), Expect = 1e-18, Method: Composition-based stats.
Identities = 38/68 (55%), Positives = 54/68 (79%), Gaps = 1/68 (1%)
Query: 40 GCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQS 99
G DP ++QWK+LA + K+R +L +FD AYQGFASGD+ RDA+A+R+F ++G + + SQS
Sbjct: 189 GVDPRQEQWKELASVVKKR-NLLAYFDMAYQGFASGDINRDAWALRHFIEQGIDVVLSQS 247
Query: 100 FAKNFGLY 107
+AKN GLY
Sbjct: 248 YAKNMGLY 255
Score = 33.1 bits (74), Expect = 0.037, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 22/36 (61%)
Query: 5 SSFSSVQQGPPIEVFAVNKAYLDDPHPKKVNLSVGG 40
S +S V+ GPP + V +A+ D + KK+NL VG
Sbjct: 2 SWWSHVEMGPPDPILGVTEAFKRDTNSKKMNLGVGA 37
>pdb|1AKA|A Chain A, Structural Basis For The Catalytic Activity Of Aspartate
Aminotransferase K258h Lacking Its
Pyridoxal-5'-Phosphate-Binding Lysine Residue
pdb|1AKA|B Chain B, Structural Basis For The Catalytic Activity Of Aspartate
Aminotransferase K258h Lacking Its
Pyridoxal-5'-Phosphate-Binding Lysine Residue
pdb|1AKB|A Chain A, Structural Basis For The Catalytic Activity Of Aspartate
Aminotransferase K258h Lacking Its
Pyridoxal-5'-Phosphate-Binding Lysine Residue
pdb|1AKC|A Chain A, Structural Basis For The Catalytic Activity Of Aspartate
Aminotransferase K258h Lacking Its
Pyridoxal-5'-Phosphate- Binding Lysine Residue
Length = 401
Score = 86.3 bits (212), Expect = 4e-18, Method: Composition-based stats.
Identities = 37/68 (54%), Positives = 53/68 (77%), Gaps = 1/68 (1%)
Query: 40 GCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQS 99
G DP ++QWK+LA + K+R +L +FD AYQGFASGD+ RDA+A+R+F ++G + + SQS
Sbjct: 189 GVDPRQEQWKELASVVKKR-NLLAYFDMAYQGFASGDINRDAWALRHFIEQGIDVVLSQS 247
Query: 100 FAKNFGLY 107
+A N GLY
Sbjct: 248 YAHNMGLY 255
Score = 33.1 bits (74), Expect = 0.036, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 22/36 (61%)
Query: 5 SSFSSVQQGPPIEVFAVNKAYLDDPHPKKVNLSVGG 40
S +S V+ GPP + V +A+ D + KK+NL VG
Sbjct: 2 SWWSHVEMGPPDPILGVTEAFKRDTNSKKMNLGVGA 37
>pdb|3MEB|A Chain A, Structure Of Cytoplasmic Aspartate Aminotransferase From
Giardia Lamblia
pdb|3MEB|B Chain B, Structure Of Cytoplasmic Aspartate Aminotransferase From
Giardia Lamblia
Length = 448
Score = 84.0 bits (206), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/68 (60%), Positives = 48/68 (70%), Gaps = 1/68 (1%)
Query: 40 GCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQS 99
G D TE QWK+L + KE+ + FFDSAYQGFA+G E DAFAVR F G E L +QS
Sbjct: 216 GIDFTEAQWKELLPIMKEKKHI-AFFDSAYQGFATGSFEADAFAVRMFVDAGVEVLVAQS 274
Query: 100 FAKNFGLY 107
F+KNFGLY
Sbjct: 275 FSKNFGLY 282
Score = 30.4 bits (67), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 18/35 (51%)
Query: 5 SSFSSVQQGPPIEVFAVNKAYLDDPHPKKVNLSVG 39
S FS PP + + Y D +PKKVNL VG
Sbjct: 23 SVFSGFPASPPDAILNLTVLYNADTNPKKVNLGVG 57
>pdb|3PD6|A Chain A, Crystal Structure Of Mouse Mitochondrial Aspartate
Aminotransferase, A Newly Identified Kynurenine
Aminotransferase-Iv
pdb|3PD6|C Chain C, Crystal Structure Of Mouse Mitochondrial Aspartate
Aminotransferase, A Newly Identified Kynurenine
Aminotransferase-Iv
pdb|3PDB|B Chain B, Crystal Structure Of Mouse Mitochondrial Aspartate
Aminotransferase In Complex With Oxaloacetic Acid
pdb|3PDB|D Chain D, Crystal Structure Of Mouse Mitochondrial Aspartate
Aminotransferase In Complex With Oxaloacetic Acid
Length = 401
Score = 82.8 bits (203), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 37/68 (54%), Positives = 51/68 (75%), Gaps = 1/68 (1%)
Query: 40 GCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQS 99
G DP +QWK++A + K++ +LF FFD AYQGFASGD ++DA+AVR+F ++G QS
Sbjct: 189 GVDPRPEQWKEIASVVKKK-NLFAFFDMAYQGFASGDGDKDAWAVRHFIEQGINVCLCQS 247
Query: 100 FAKNFGLY 107
+AKN GLY
Sbjct: 248 YAKNMGLY 255
Score = 33.1 bits (74), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 22/35 (62%)
Query: 5 SSFSSVQQGPPIEVFAVNKAYLDDPHPKKVNLSVG 39
S ++ V+ GPP + V +A+ D + KK+NL VG
Sbjct: 2 SWWTHVEMGPPDPILGVTEAFKRDTNSKKMNLGVG 36
>pdb|4H51|A Chain A, Crystal Structure Of A Putative Aspartate Aminotransferase
From Leishmania Major Friedlin
pdb|4H51|B Chain B, Crystal Structure Of A Putative Aspartate Aminotransferase
From Leishmania Major Friedlin
Length = 420
Score = 81.6 bits (200), Expect = 9e-17, Method: Composition-based stats.
Identities = 37/69 (53%), Positives = 49/69 (71%), Gaps = 1/69 (1%)
Query: 40 GCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQS 99
G DP+++QW ++A L + VFFDSAYQG+ASG L+ DA+A R FA+ G E L +QS
Sbjct: 204 GVDPSQEQWNEIASLMLAKHHQ-VFFDSAYQGYASGSLDTDAYAARLFARRGIEVLLAQS 262
Query: 100 FAKNFGLYS 108
F+ N GLYS
Sbjct: 263 FSXNMGLYS 271
>pdb|3HLM|A Chain A, Crystal Structure Of Mouse Mitochondrial Aspartate
AminotransferaseKYNURENINE AMINOTRANSFERASE IV
pdb|3HLM|B Chain B, Crystal Structure Of Mouse Mitochondrial Aspartate
AminotransferaseKYNURENINE AMINOTRANSFERASE IV
pdb|3HLM|C Chain C, Crystal Structure Of Mouse Mitochondrial Aspartate
AminotransferaseKYNURENINE AMINOTRANSFERASE IV
pdb|3HLM|D Chain D, Crystal Structure Of Mouse Mitochondrial Aspartate
AminotransferaseKYNURENINE AMINOTRANSFERASE IV
pdb|3PD6|B Chain B, Crystal Structure Of Mouse Mitochondrial Aspartate
Aminotransferase, A Newly Identified Kynurenine
Aminotransferase-Iv
pdb|3PD6|D Chain D, Crystal Structure Of Mouse Mitochondrial Aspartate
Aminotransferase, A Newly Identified Kynurenine
Aminotransferase-Iv
pdb|3PDB|A Chain A, Crystal Structure Of Mouse Mitochondrial Aspartate
Aminotransferase In Complex With Oxaloacetic Acid
pdb|3PDB|C Chain C, Crystal Structure Of Mouse Mitochondrial Aspartate
Aminotransferase In Complex With Oxaloacetic Acid
Length = 401
Score = 80.9 bits (198), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 36/68 (52%), Positives = 50/68 (73%), Gaps = 1/68 (1%)
Query: 40 GCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQS 99
G DP +QWK++A + K++ +LF FFD AYQGFASGD ++DA+AVR+F ++G QS
Sbjct: 189 GVDPRPEQWKEIASVVKKK-NLFAFFDMAYQGFASGDGDKDAWAVRHFIEQGINVCLCQS 247
Query: 100 FAKNFGLY 107
+A N GLY
Sbjct: 248 YAXNMGLY 255
Score = 33.1 bits (74), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 22/35 (62%)
Query: 5 SSFSSVQQGPPIEVFAVNKAYLDDPHPKKVNLSVG 39
S ++ V+ GPP + V +A+ D + KK+NL VG
Sbjct: 2 SWWTHVEMGPPDPILGVTEAFKRDTNSKKMNLGVG 36
>pdb|4EU1|A Chain A, Structure Of A Mitochondrial Aspartate Aminotransferase
From Trypanosoma Brucei
pdb|4EU1|B Chain B, Structure Of A Mitochondrial Aspartate Aminotransferase
From Trypanosoma Brucei
Length = 409
Score = 67.4 bits (163), Expect = 2e-12, Method: Composition-based stats.
Identities = 31/68 (45%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 40 GCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQS 99
G DPT D W+Q+ + K R + F D AYQGFA+G L+ DAF R+ + +QS
Sbjct: 197 GVDPTHDDWRQVCDVIKRRNHI-PFVDMAYQGFATGQLDYDAFVPRHLVDMVPNLIVAQS 255
Query: 100 FAKNFGLY 107
F+ NFGLY
Sbjct: 256 FSXNFGLY 263
Score = 26.2 bits (56), Expect = 4.9, Method: Composition-based stats.
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 13 GPPIEVFAVNKAYLDDPHPKKVNLSVGGCDPTEDQ 47
G P + + + + DP +KVNLS+G DQ
Sbjct: 23 GKPDPILGLGQDFRMDPAKRKVNLSIGVYRDDADQ 57
>pdb|1YOO|A Chain A, Aspartate Aminotransferase Mutant Atb17 With Isovaleric
Acid
Length = 396
Score = 64.3 bits (155), Expect = 2e-11, Method: Composition-based stats.
Identities = 36/69 (52%), Positives = 45/69 (65%), Gaps = 2/69 (2%)
Query: 40 GCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQS 99
G DPT +QW+ LAQL E+ L FD AYQGFA G LE DA +R FA E + + S
Sbjct: 186 GIDPTLEQWQTLAQLSVEKGWL-PLFDFAYQGFARG-LEEDAEGLRAFAAMHKELIVASS 243
Query: 100 FAKNFGLYS 108
++KNFGLY+
Sbjct: 244 YSKNFGLYN 252
>pdb|1CZC|A Chain A, Aspartate Aminotransferase Mutant Atb17139S142N WITH
GLUTARIC ACID
pdb|1CZE|A Chain A, Aspartate Aminotransferase Mutant Atb17139S142N WITH
SUCCINIC ACID
Length = 396
Score = 64.3 bits (155), Expect = 2e-11, Method: Composition-based stats.
Identities = 36/69 (52%), Positives = 45/69 (65%), Gaps = 2/69 (2%)
Query: 40 GCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQS 99
G DPT +QW+ LAQL E+ L FD AYQGFA G LE DA +R FA E + + S
Sbjct: 186 GIDPTLEQWQTLAQLSVEKGWL-PLFDFAYQGFARG-LEEDAEGLRAFAAMHKELIVASS 243
Query: 100 FAKNFGLYS 108
++KNFGLY+
Sbjct: 244 YSKNFGLYN 252
>pdb|1QIS|A Chain A, Aspartate Aminotransferase From Escherichia Coli, C191f
Mutation, With Bound Maleate
Length = 396
Score = 63.9 bits (154), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/69 (52%), Positives = 45/69 (65%), Gaps = 2/69 (2%)
Query: 40 GCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQS 99
G DPT +QW+ LAQL E+ L FD AYQGFA G LE DA +R FA E + + S
Sbjct: 186 GIDPTLEQWQTLAQLSVEKGWL-PLFDFAYQGFARG-LEEDAEGLRAFAAMHKELIVASS 243
Query: 100 FAKNFGLYS 108
++KNFGLY+
Sbjct: 244 YSKNFGLYN 252
>pdb|1B4X|A Chain A, Aspartate Aminotransferase From E. Coli, C191s Mutation,
With Bound Maleate
pdb|5EAA|A Chain A, Aspartate Aminotransferase From E. Coli, C191s Mutation
Length = 396
Score = 63.9 bits (154), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/69 (52%), Positives = 45/69 (65%), Gaps = 2/69 (2%)
Query: 40 GCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQS 99
G DPT +QW+ LAQL E+ L FD AYQGFA G LE DA +R FA E + + S
Sbjct: 186 GIDPTLEQWQTLAQLSVEKGWL-PLFDFAYQGFARG-LEEDAEGLRAFAAMHKELIVASS 243
Query: 100 FAKNFGLYS 108
++KNFGLY+
Sbjct: 244 YSKNFGLYN 252
>pdb|1QIR|A Chain A, Aspartate Aminotransferase From Escherichia Coli, C191y
Mutation, With Bound Maleate
Length = 396
Score = 63.9 bits (154), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/69 (52%), Positives = 45/69 (65%), Gaps = 2/69 (2%)
Query: 40 GCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQS 99
G DPT +QW+ LAQL E+ L FD AYQGFA G LE DA +R FA E + + S
Sbjct: 186 GIDPTLEQWQTLAQLSVEKGWL-PLFDFAYQGFARG-LEEDAEGLRAFAAMHKELIVASS 243
Query: 100 FAKNFGLYS 108
++KNFGLY+
Sbjct: 244 YSKNFGLYN 252
>pdb|2D66|A Chain A, Aspartate Aminotransferase Mutant Mab
pdb|2D7Z|A Chain A, Aspartate Aminotransferase Mutant Mab Complexed With
Maleic Acid
Length = 396
Score = 63.9 bits (154), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/69 (52%), Positives = 45/69 (65%), Gaps = 2/69 (2%)
Query: 40 GCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQS 99
G DPT +QW+ LAQL E+ L FD AYQGFA G LE DA +R FA E + + S
Sbjct: 186 GIDPTLEQWQTLAQLSVEKGWL-PLFDFAYQGFARG-LEEDAEGLRAFAAMHKELIVASS 243
Query: 100 FAKNFGLYS 108
++KNFGLY+
Sbjct: 244 YSKNFGLYN 252
>pdb|1QIT|A Chain A, Aspartate Aminotransferase From Escherichia Coli, C191w
Mutation, With Bound Maleate
Length = 396
Score = 63.9 bits (154), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/69 (52%), Positives = 45/69 (65%), Gaps = 2/69 (2%)
Query: 40 GCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQS 99
G DPT +QW+ LAQL E+ L FD AYQGFA G LE DA +R FA E + + S
Sbjct: 186 GIDPTLEQWQTLAQLSVEKGWL-PLFDFAYQGFARG-LEEDAEGLRAFAAMHKELIVASS 243
Query: 100 FAKNFGLYS 108
++KNFGLY+
Sbjct: 244 YSKNFGLYN 252
>pdb|2D61|A Chain A, Aspartate Aminotransferase Mutant Ma With Maleic Acid
pdb|2D63|A Chain A, Aspartate Aminotransferase Mutant Ma With Isovaleric Acid
pdb|2D7Y|A Chain A, Aspartate Aminotransferase Mutant Ma
Length = 396
Score = 63.9 bits (154), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/69 (52%), Positives = 45/69 (65%), Gaps = 2/69 (2%)
Query: 40 GCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQS 99
G DPT +QW+ LAQL E+ L FD AYQGFA G LE DA +R FA E + + S
Sbjct: 186 GIDPTLEQWQTLAQLSVEKGWL-PLFDFAYQGFARG-LEEDAEGLRAFAAMHKELIVASS 243
Query: 100 FAKNFGLYS 108
++KNFGLY+
Sbjct: 244 YSKNFGLYN 252
>pdb|1ARI|A Chain A, Aspartate Aminotransferase, W140h Mutant, Maleate Complex
pdb|1ARI|B Chain B, Aspartate Aminotransferase, W140h Mutant, Maleate Complex
Length = 396
Score = 63.9 bits (154), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/69 (52%), Positives = 45/69 (65%), Gaps = 2/69 (2%)
Query: 40 GCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQS 99
G DPT +QW+ LAQL E+ L FD AYQGFA G LE DA +R FA E + + S
Sbjct: 186 GIDPTLEQWQTLAQLSVEKGWL-PLFDFAYQGFARG-LEEDAEGLRAFAAMHKELIVASS 243
Query: 100 FAKNFGLYS 108
++KNFGLY+
Sbjct: 244 YSKNFGLYN 252
>pdb|1AAM|A Chain A, The Structural Basis For The Altered Substrate Specificity
Of The R292d Active Site Mutant Of Aspartate
Aminotransferase From E. Coli
Length = 396
Score = 63.9 bits (154), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/69 (52%), Positives = 45/69 (65%), Gaps = 2/69 (2%)
Query: 40 GCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQS 99
G DPT +QW+ LAQL E+ L FD AYQGFA G LE DA +R FA E + + S
Sbjct: 186 GIDPTLEQWQTLAQLSVEKGWL-PLFDFAYQGFARG-LEEDAEGLRAFAAMHKELIVASS 243
Query: 100 FAKNFGLYS 108
++KNFGLY+
Sbjct: 244 YSKNFGLYN 252
>pdb|1ASL|A Chain A, Crystal Structures Of Escherichia Coli Aspartate
Aminotransferase In Two Conformations: Comparison Of An
Unliganded Open And Two Liganded Closed Forms
pdb|1ASL|B Chain B, Crystal Structures Of Escherichia Coli Aspartate
Aminotransferase In Two Conformations: Comparison Of An
Unliganded Open And Two Liganded Closed Forms
pdb|1ASM|A Chain A, Crystal Structures Of Escherichia Coli Aspartate
Aminotransferase In Two Conformations: Comparison Of An
Unliganded Open And Two Liganded Closed Forms
pdb|1ASM|B Chain B, Crystal Structures Of Escherichia Coli Aspartate
Aminotransferase In Two Conformations: Comparison Of An
Unliganded Open And Two Liganded Closed Forms
pdb|1ASN|A Chain A, Crystal Structures Of Escherichia Coli Aspartate
Aminotransferase In Two Conformations: Comparison Of An
Unliganded Open And Two Liganded Closed Forms
pdb|1ASN|B Chain B, Crystal Structures Of Escherichia Coli Aspartate
Aminotransferase In Two Conformations: Comparison Of An
Unliganded Open And Two Liganded Closed Forms
pdb|1ARG|A Chain A, Aspartate Aminotransferase, Phospho-5'-Pyridoxyl Aspartate
Complex
pdb|1ARG|B Chain B, Aspartate Aminotransferase, Phospho-5'-Pyridoxyl Aspartate
Complex
pdb|1C9C|A Chain A, Aspartate Aminotransferase Complexed With
C3-Pyridoxal-5'-Phosphate
pdb|1CQ6|A Chain A, Aspartate Aminotransferase Complex With
C4-Pyridoxal-5p-Phosphate
pdb|1CQ7|A Chain A, Aspartate Aminotransferase (E.C. 2.6.1.1) Complexed With
C5-Pyridoxal- 5p-Phosphate
pdb|1CQ8|A Chain A, Aspartate Aminotransferase (E.C. 2.6.1.1) Complexed With
C6-Pyridoxal- 5p-Phosphate
pdb|1X28|A Chain A, Crystal Structure Of E.Coli Aspat Complexed With N-
Phosphopyridoxyl-L-Glutamic Acid
pdb|1X28|B Chain B, Crystal Structure Of E.Coli Aspat Complexed With N-
Phosphopyridoxyl-L-Glutamic Acid
pdb|1X29|A Chain A, Crystal Structure Of E.Coli Aspat Complexed With N-
Phosphopyridoxyl-2-Methyl-L-Glutamic Acid
pdb|1X29|B Chain B, Crystal Structure Of E.Coli Aspat Complexed With N-
Phosphopyridoxyl-2-Methyl-L-Glutamic Acid
pdb|1X2A|A Chain A, Crystal Structure Of E.Coli Aspat Complexed With N-
Phosphopyridoxyl-D-Glutamic Acid
pdb|1X2A|B Chain B, Crystal Structure Of E.Coli Aspat Complexed With N-
Phosphopyridoxyl-D-Glutamic Acid
pdb|1AAW|A Chain A, The Structural Basis For The Altered Substrate Specificity
Of The R292d Active Site Mutant Of Aspartate
Aminotransferase From E. Coli
pdb|1AMQ|A Chain A, X-Ray Crystallographic Study Of Pyridoxamine
5'-Phosphate-Type Aspartate Aminotransferases From
Escherichia Coli In Three Forms
pdb|1AMR|A Chain A, X-Ray Crystallographic Study Of Pyridoxamine
5'-Phosphate-Type Aspartate Aminotransferases From
Escherichia Coli In Three Forms
pdb|1AMS|A Chain A, X-Ray Crystallographic Study Of Pyridoxamine
5'-Phosphate-Type Aspartate Aminotransferases From
Escherichia Coli In Three Forms
pdb|1ARS|A Chain A, X-ray Crystallographic Study Of Pyridoxal
5'-phosphate-type Aspartate Aminotransferases From
Escherichia Coli In Open And Closed Form
pdb|1ART|A Chain A, X-ray Crystallographic Study Of Pyridoxal
5'-phosphate-type Aspartate Aminotransferases From
Escherichia Coli In Open And Closed Form
pdb|1ASA|A Chain A, The Structural Basis For The Reduced Activity Of The
Y226f(Y225f) Active Site Mutant Of E. Coli Aspartate
Aminotransferase
pdb|1ASD|A Chain A, The Structure Of Wild Type E. Coli Aspartate
Aminotransferase Reconstituted With N-Meplp
pdb|1ASE|A Chain A, The Structure Of Wild Type E. Coli Aspartate
Aminotransferase Reconstituted With Plp-N-Oxide
pdb|3PA9|A Chain A, Mechanism Of Inactivation Of E. Coli Aspartate
Aminotransferase By
(S)-4-Amino-4,5-Dihydro-2-Furancarboxylic Acid (S-Adfa)
Ph 7.5
pdb|3PAA|A Chain A, Mechanism Of Inactivation Of E. Coli Aspartate
Aminotransferase By
(S)-4-Amino-4,5-Dihydro-2-Furancarboxylic Acid (S-Adfa)
Ph 8.0
pdb|3QPG|A Chain A, Crystal Structures Of Escherichia Coli Aspartate
Aminotransferase Reconstituted With 1-Deaza-Pyridoxal
5'-Phosphate: Internal Aldimine And Stable L-Aspartate
External Aldimine
Length = 396
Score = 63.9 bits (154), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/69 (52%), Positives = 45/69 (65%), Gaps = 2/69 (2%)
Query: 40 GCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQS 99
G DPT +QW+ LAQL E+ L FD AYQGFA G LE DA +R FA E + + S
Sbjct: 186 GIDPTLEQWQTLAQLSVEKGWL-PLFDFAYQGFARG-LEEDAEGLRAFAAMHKELIVASS 243
Query: 100 FAKNFGLYS 108
++KNFGLY+
Sbjct: 244 YSKNFGLYN 252
>pdb|1AHY|A Chain A, Aspartate Aminotransferase Hexamutant
pdb|1AHY|B Chain B, Aspartate Aminotransferase Hexamutant
pdb|1AHX|A Chain A, Aspartate Aminotransferase Hexamutant
pdb|1AHX|B Chain B, Aspartate Aminotransferase Hexamutant
pdb|1AHG|A Chain A, Aspartate Aminotransferase Hexamutant
pdb|1AHG|B Chain B, Aspartate Aminotransferase Hexamutant
pdb|1AHF|A Chain A, Aspartate Aminotransferase Hexamutant
pdb|1AHF|B Chain B, Aspartate Aminotransferase Hexamutant
pdb|1AHE|A Chain A, Aspartate Aminotransferase Hexamutant
pdb|1AHE|B Chain B, Aspartate Aminotransferase Hexamutant
Length = 396
Score = 63.9 bits (154), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/69 (52%), Positives = 45/69 (65%), Gaps = 2/69 (2%)
Query: 40 GCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQS 99
G DPT +QW+ LAQL E+ L FD AYQGFA G LE DA +R FA E + + S
Sbjct: 186 GIDPTLEQWQTLAQLSVEKGWL-PLFDFAYQGFARG-LEEDAEGLRAFAAMHKELIVASS 243
Query: 100 FAKNFGLYS 108
++KNFGLY+
Sbjct: 244 YSKNFGLYN 252
>pdb|1G7X|A Chain A, Aspartate Aminotransferase Active Site Mutant
N194aR292LR386L
Length = 396
Score = 63.9 bits (154), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/69 (52%), Positives = 45/69 (65%), Gaps = 2/69 (2%)
Query: 40 GCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQS 99
G DPT +QW+ LAQL E+ L FD AYQGFA G LE DA +R FA E + + S
Sbjct: 186 GIDPTLEQWQTLAQLSVEKGWL-PLFDFAYQGFARG-LEEDAEGLRAFAAMHKELIVASS 243
Query: 100 FAKNFGLYS 108
++KNFGLY+
Sbjct: 244 YSKNFGLYN 252
>pdb|1G7W|A Chain A, Aspartate Aminotransferase Active Site Mutant N194aR386L
Length = 396
Score = 63.9 bits (154), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/69 (52%), Positives = 45/69 (65%), Gaps = 2/69 (2%)
Query: 40 GCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQS 99
G DPT +QW+ LAQL E+ L FD AYQGFA G LE DA +R FA E + + S
Sbjct: 186 GIDPTLEQWQTLAQLSVEKGWL-PLFDFAYQGFARG-LEEDAEGLRAFAAMHKELIVASS 243
Query: 100 FAKNFGLYS 108
++KNFGLY+
Sbjct: 244 YSKNFGLYN 252
>pdb|1G4X|A Chain A, Aspartate Aminotransferase Active Site Mutant N194aR292L
Length = 396
Score = 63.9 bits (154), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/69 (52%), Positives = 45/69 (65%), Gaps = 2/69 (2%)
Query: 40 GCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQS 99
G DPT +QW+ LAQL E+ L FD AYQGFA G LE DA +R FA E + + S
Sbjct: 186 GIDPTLEQWQTLAQLSVEKGWL-PLFDFAYQGFARG-LEEDAEGLRAFAAMHKELIVASS 243
Query: 100 FAKNFGLYS 108
++KNFGLY+
Sbjct: 244 YSKNFGLYN 252
>pdb|2D64|A Chain A, Aspartate Aminotransferase Mutant Mabc With Isovaleric
Acid
pdb|2D65|A Chain A, Aspartate Aminotransferase Mutant Mabc
Length = 396
Score = 63.9 bits (154), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/69 (52%), Positives = 45/69 (65%), Gaps = 2/69 (2%)
Query: 40 GCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQS 99
G DPT +QW+ LAQL E+ L FD AYQGFA G LE DA +R FA E + + S
Sbjct: 186 GIDPTLEQWQTLAQLSVEKGWL-PLFDFAYQGFARG-LEEDAEGLRAFAAMHKELIVASS 243
Query: 100 FAKNFGLYS 108
++KNFGLY+
Sbjct: 244 YSKNFGLYN 252
>pdb|3AAT|A Chain A, Activity And Structure Of The Active-Site Mutants R386y
And R386f Of Escherichia Coli Aspartate Aminotransferase
Length = 396
Score = 63.9 bits (154), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/69 (52%), Positives = 45/69 (65%), Gaps = 2/69 (2%)
Query: 40 GCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQS 99
G DPT +QW+ LAQL E+ L FD AYQGFA G LE DA +R FA E + + S
Sbjct: 186 GIDPTLEQWQTLAQLSVEKGWL-PLFDFAYQGFARG-LEEDAEGLRAFAAMHKELIVASS 243
Query: 100 FAKNFGLYS 108
++KNFGLY+
Sbjct: 244 YSKNFGLYN 252
>pdb|1YAA|A Chain A, Aspartate Aminotransferase From Saccharomyces Cerevisiae
Cytoplasm
pdb|1YAA|B Chain B, Aspartate Aminotransferase From Saccharomyces Cerevisiae
Cytoplasm
pdb|1YAA|C Chain C, Aspartate Aminotransferase From Saccharomyces Cerevisiae
Cytoplasm
pdb|1YAA|D Chain D, Aspartate Aminotransferase From Saccharomyces Cerevisiae
Cytoplasm
Length = 412
Score = 63.9 bits (154), Expect = 2e-11, Method: Composition-based stats.
Identities = 33/72 (45%), Positives = 46/72 (63%), Gaps = 6/72 (8%)
Query: 40 GCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQE----GFEFL 95
G DPT +QW Q+ + + FD+AYQGFA+GDL++DA+AVR ++ F+
Sbjct: 190 GLDPTSEQWVQIVDAIASKNHI-ALFDTAYQGFATGDLDKDAYAVRLGVEKLSTVSPVFV 248
Query: 96 CSQSFAKNFGLY 107
C QSFAKN G+Y
Sbjct: 249 C-QSFAKNAGMY 259
>pdb|2D5Y|A Chain A, Aspartate Aminotransferase Mutant Mc With Isovaleric Acid
Length = 396
Score = 63.9 bits (154), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/69 (52%), Positives = 45/69 (65%), Gaps = 2/69 (2%)
Query: 40 GCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQS 99
G DPT +QW+ LAQL E+ L FD AYQGFA G LE DA +R FA E + + S
Sbjct: 186 GIDPTLEQWQTLAQLSVEKGWL-PLFDFAYQGFARG-LEEDAEGLRAFAAMHKELIVASS 243
Query: 100 FAKNFGLYS 108
++KNFGLY+
Sbjct: 244 YSKNFGLYN 252
>pdb|1IX6|A Chain A, Aspartate Aminotransferase Active Site Mutant V39f
pdb|1IX7|A Chain A, Aspartate Aminotransferase Active Site Mutant V39f Maleate
Complex
Length = 396
Score = 63.9 bits (154), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/69 (52%), Positives = 45/69 (65%), Gaps = 2/69 (2%)
Query: 40 GCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQS 99
G DPT +QW+ LAQL E+ L FD AYQGFA G LE DA +R FA E + + S
Sbjct: 186 GIDPTLEQWQTLAQLSVEKGWL-PLFDFAYQGFARG-LEEDAEGLRAFAAMHKELIVASS 243
Query: 100 FAKNFGLYS 108
++KNFGLY+
Sbjct: 244 YSKNFGLYN 252
>pdb|1IX8|A Chain A, Aspartate Aminotransferase Active Site Mutant V39fN194A
Length = 396
Score = 63.9 bits (154), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/69 (52%), Positives = 45/69 (65%), Gaps = 2/69 (2%)
Query: 40 GCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQS 99
G DPT +QW+ LAQL E+ L FD AYQGFA G LE DA +R FA E + + S
Sbjct: 186 GIDPTLEQWQTLAQLSVEKGWL-PLFDFAYQGFARG-LEEDAEGLRAFAAMHKELIVASS 243
Query: 100 FAKNFGLYS 108
++KNFGLY+
Sbjct: 244 YSKNFGLYN 252
>pdb|3TAT|A Chain A, Tyrosine Aminotransferase From E. Coli
pdb|3TAT|B Chain B, Tyrosine Aminotransferase From E. Coli
pdb|3TAT|C Chain C, Tyrosine Aminotransferase From E. Coli
pdb|3TAT|D Chain D, Tyrosine Aminotransferase From E. Coli
pdb|3TAT|E Chain E, Tyrosine Aminotransferase From E. Coli
pdb|3TAT|F Chain F, Tyrosine Aminotransferase From E. Coli
Length = 397
Score = 62.4 bits (150), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 40 GCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQS 99
G D T DQW + ++ K R L F D AYQGF +G +E DA+A+R A G L S S
Sbjct: 187 GADLTNDQWDAVIEILKAR-ELIPFLDIAYQGFGAG-MEEDAYAIRAIASAGLPALVSNS 244
Query: 100 FAKNFGLY 107
F+K F LY
Sbjct: 245 FSKIFSLY 252
>pdb|3FSL|A Chain A, Crystal Structure Of Tyrosine Aminotransferase Tripple
Mutant (P181q, R183g,A321k) From Escherichia Coli At
2.35 A Resolution
pdb|3FSL|B Chain B, Crystal Structure Of Tyrosine Aminotransferase Tripple
Mutant (P181q, R183g,A321k) From Escherichia Coli At
2.35 A Resolution
pdb|3FSL|C Chain C, Crystal Structure Of Tyrosine Aminotransferase Tripple
Mutant (P181q, R183g,A321k) From Escherichia Coli At
2.35 A Resolution
pdb|3FSL|D Chain D, Crystal Structure Of Tyrosine Aminotransferase Tripple
Mutant (P181q, R183g,A321k) From Escherichia Coli At
2.35 A Resolution
pdb|3FSL|E Chain E, Crystal Structure Of Tyrosine Aminotransferase Tripple
Mutant (P181q, R183g,A321k) From Escherichia Coli At
2.35 A Resolution
pdb|3FSL|F Chain F, Crystal Structure Of Tyrosine Aminotransferase Tripple
Mutant (P181q, R183g,A321k) From Escherichia Coli At
2.35 A Resolution
Length = 397
Score = 62.4 bits (150), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 40 GCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQS 99
G D T DQW + ++ K R L F D AYQGF +G +E DA+A+R A G L S S
Sbjct: 187 GADLTNDQWDAVIEILKAR-ELIPFLDIAYQGFGAG-MEEDAYAIRAIASAGLPALVSNS 244
Query: 100 FAKNFGLY 107
F+K F LY
Sbjct: 245 FSKIFSLY 252
>pdb|1ASF|A Chain A, The Structural Basis For The Reduced Activity Of The
Y226f(Y225f) Active Site Mutant Of E. Coli Aspartate
Aminotransferase
pdb|1ASG|A Chain A, The Structural Basis For The Reduced Activity Of The
Y226f(Y225f) Active Site Mutant Of E. Coli Aspartate
Aminotransferase
Length = 396
Score = 62.4 bits (150), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 35/69 (50%), Positives = 45/69 (65%), Gaps = 2/69 (2%)
Query: 40 GCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQS 99
G DPT +QW+ LAQL E+ L FD A+QGFA G LE DA +R FA E + + S
Sbjct: 186 GIDPTLEQWQTLAQLSVEKGWL-PLFDFAFQGFARG-LEEDAEGLRAFAAMHKELIVASS 243
Query: 100 FAKNFGLYS 108
++KNFGLY+
Sbjct: 244 YSKNFGLYN 252
>pdb|1G4V|A Chain A, Aspartate Aminotransferase Active Site Mutant N194a/y225f
Length = 396
Score = 62.0 bits (149), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 35/69 (50%), Positives = 45/69 (65%), Gaps = 2/69 (2%)
Query: 40 GCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQS 99
G DPT +QW+ LAQL E+ L FD A+QGFA G LE DA +R FA E + + S
Sbjct: 186 GIDPTLEQWQTLAQLSVEKGWL-PLFDFAFQGFARG-LEEDAEGLRAFAAMHKELIVASS 243
Query: 100 FAKNFGLYS 108
++KNFGLY+
Sbjct: 244 YSKNFGLYN 252
>pdb|1AIA|A Chain A, Structural Basis For The Catalytic Activity Of Aspartate
Aminotransferase K258h Lacking The
Pyridoxal-5'-Phosphate Binding Lysine Residue
pdb|1AIA|B Chain B, Structural Basis For The Catalytic Activity Of Aspartate
Aminotransferase K258h Lacking The
Pyridoxal-5'-Phosphate Binding Lysine Residue
pdb|1AIB|A Chain A, Structural Basis For The Catalytic Activity Of Aspartate
Aminotransferase K258h Lacking The
Pyridoxal-5'-Phosphate Binding Lysine Residue
pdb|1AIB|B Chain B, Structural Basis For The Catalytic Activity Of Aspartate
Aminotransferase K258h Lacking The
Pyridoxal-5'-Phosphate Binding Lysine Residue
pdb|1AIC|A Chain A, Structural Basis For The Catalytic Activity Of Aspartate
Aminotransferase K258h Lacking The
Pyridoxal-5'-Phosphate Binding Lysine Residue
pdb|1AIC|B Chain B, Structural Basis For The Catalytic Activity Of Aspartate
Aminotransferase K258h Lacking The
Pyridoxal-5'-Phosphate Binding Lysine Residue
Length = 396
Score = 62.0 bits (149), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 35/69 (50%), Positives = 44/69 (63%), Gaps = 2/69 (2%)
Query: 40 GCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQS 99
G DPT +QW+ LAQL E+ L FD AYQGFA G LE DA +R FA E + + S
Sbjct: 186 GIDPTLEQWQTLAQLSVEKGWL-PLFDFAYQGFARG-LEEDAEGLRAFAAMHKELIVASS 243
Query: 100 FAKNFGLYS 108
++ NFGLY+
Sbjct: 244 YSHNFGLYN 252
>pdb|1BQA|A Chain A, Aspartate Aminotransferase P195a Mutant
pdb|1BQA|B Chain B, Aspartate Aminotransferase P195a Mutant
Length = 396
Score = 62.0 bits (149), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 35/69 (50%), Positives = 44/69 (63%), Gaps = 2/69 (2%)
Query: 40 GCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQS 99
G DPT +QW+ LAQL E+ L FD AYQGFA G LE DA +R FA E + + S
Sbjct: 186 GIDPTLEQWQTLAQLSVEKGWL-PLFDFAYQGFARG-LEEDAEGLRAFAAMHKELIVASS 243
Query: 100 FAKNFGLYS 108
++ NFGLY+
Sbjct: 244 YSXNFGLYN 252
>pdb|2AAT|A Chain A, 2.8-Angstroms-Resolution Crystal Structure Of An
Active-Site Mutant Of Aspartate Aminotransferase From
Escherichia Coli
pdb|4DBC|A Chain A, Substrate Activation In Aspartate Aminotransferase
Length = 396
Score = 62.0 bits (149), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 35/69 (50%), Positives = 44/69 (63%), Gaps = 2/69 (2%)
Query: 40 GCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQS 99
G DPT +QW+ LAQL E+ L FD AYQGFA G LE DA +R FA E + + S
Sbjct: 186 GIDPTLEQWQTLAQLSVEKGWL-PLFDFAYQGFARG-LEEDAEGLRAFAAMHKELIVASS 243
Query: 100 FAKNFGLYS 108
++ NFGLY+
Sbjct: 244 YSANFGLYN 252
>pdb|4F5M|A Chain A, Wild-type E. Coli Aspartate Aminotransferase: A Template
For The Interconversion Of Substrate Specificity And
Activity To Tyrosine Aminotransferase By The Janus
Algorithm.
pdb|4F5M|B Chain B, Wild-type E. Coli Aspartate Aminotransferase: A Template
For The Interconversion Of Substrate Specificity And
Activity To Tyrosine Aminotransferase By The Janus
Algorithm
Length = 406
Score = 62.0 bits (149), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 35/69 (50%), Positives = 44/69 (63%), Gaps = 2/69 (2%)
Query: 40 GCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQS 99
G DPT +QW+ LAQL E+ L FD AYQGFA G LE DA +R FA E + + S
Sbjct: 196 GIDPTLEQWQTLAQLSVEKGWL-PLFDFAYQGFARG-LEEDAEGLRAFAAMHKELIVASS 253
Query: 100 FAKNFGLYS 108
++ NFGLY+
Sbjct: 254 YSXNFGLYN 262
>pdb|2Q7W|A Chain A, Structural Studies Reveals The Inactivation Of E. Coli
L-Aspartate Aminotransferase
(S)-4,5-Amino-Dihydro-2-Thiophenecarboxylic Acid (Sadta)
Via Two Mechanisms At Ph 6.0
pdb|2QBT|A Chain A, Structural Studies Reveal The Inactivation Of E. Coli
L-Aspartate Aminotransferase By
(S)-4,5-Amino-Dihydro-2-Thiophenecarboxylic Acid (Sadta)
Via Two Mechanisms (At Ph 8.0)
pdb|2QA3|A Chain A, Structural Studies Reveal The Inactivation Of E. Coli
L-Aspartate Aminotransferase By
(S)-4,5-Amino-Dihydro-2-Thiophenecarboxylic Acid (Sadta)
Via Two Mechanisms (At Ph6.5)
pdb|2QB2|A Chain A, Structural Studies Reveal The Inactivation Of E. Coli
L-Aspartate Aminotransferase By
(S)-4,5-Dihydro-2thiophenecarboylic Acid (Sadta) Via Two
Mechanisms (At Ph 7.0).
pdb|2QB3|A Chain A, Structural Studies Reveal The Inactivation Of E. Coli
L-aspartate Aminotransferase By
(s)-4,5-dihydro-2-thiophenecarboxylic Acid (sadta) Via
Two Mechanisms (at Ph 7.5)
pdb|3QN6|A Chain A, Crystal Structures Of Escherichia Coli Aspartate
Aminotransferase Reconstituted With 1-Deaza-Pyridoxal
5'-Phosphate: Internal Aldimine And Stable L-Aspartate
External Aldimine
Length = 396
Score = 62.0 bits (149), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 35/69 (50%), Positives = 44/69 (63%), Gaps = 2/69 (2%)
Query: 40 GCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQS 99
G DPT +QW+ LAQL E+ L FD AYQGFA G LE DA +R FA E + + S
Sbjct: 186 GIDPTLEQWQTLAQLSVEKGWL-PLFDFAYQGFARG-LEEDAEGLRAFAAMHKELIVASS 243
Query: 100 FAKNFGLYS 108
++ NFGLY+
Sbjct: 244 YSXNFGLYN 252
>pdb|1TOE|A Chain A, Unliganded Structure Of Hexamutant + A293d Mutant Of E.
Coli Aspartate Aminotransferase
pdb|1TOI|A Chain A, Hydrocinnamic Acid-Bound Structure Of Hexamutant + A293d
Mutant Of E. Coli Aspartate Aminotransferase
Length = 396
Score = 61.6 bits (148), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/69 (50%), Positives = 44/69 (63%), Gaps = 2/69 (2%)
Query: 40 GCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQS 99
G DPT +QW+ LAQL E+ L FD AYQGFA G LE DA +R FA E + + S
Sbjct: 186 GIDPTLEQWQTLAQLSVEKGWL-PLFDFAYQGFARG-LEEDAEGLRAFAAMHKELIVASS 243
Query: 100 FAKNFGLYS 108
++ NFGLY+
Sbjct: 244 YSXNFGLYN 252
>pdb|1BQD|A Chain A, Aspartate Aminotransferase P138aP195A DOUBLE MUTANT
pdb|1BQD|B Chain B, Aspartate Aminotransferase P138aP195A DOUBLE MUTANT
Length = 396
Score = 61.6 bits (148), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/69 (50%), Positives = 44/69 (63%), Gaps = 2/69 (2%)
Query: 40 GCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQS 99
G DPT +QW+ LAQL E+ L FD AYQGFA G LE DA +R FA E + + S
Sbjct: 186 GIDPTLEQWQTLAQLSVEKGWL-PLFDFAYQGFARG-LEEDAEGLRAFAAMHKELIVASS 243
Query: 100 FAKNFGLYS 108
++ NFGLY+
Sbjct: 244 YSXNFGLYN 252
>pdb|3UAK|A Chain A, Crystal Structure Of De Novo Designed Cysteine Esterase
Ech14, Northeast Structural Genomics Consortium Target
Or54
pdb|3UAK|B Chain B, Crystal Structure Of De Novo Designed Cysteine Esterase
Ech14, Northeast Structural Genomics Consortium Target
Or54
Length = 406
Score = 61.6 bits (148), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/71 (50%), Positives = 45/71 (63%), Gaps = 6/71 (8%)
Query: 40 GCDPTEDQWKQLAQLFKERP--SLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCS 97
G DPT +QW+ LAQL E+ LF FF YQGFA G LE DA +R FA E + +
Sbjct: 186 GIDPTLEQWQTLAQLSVEKGWLPLFTFF---YQGFARG-LEEDAEGLRAFAAXHKELIVA 241
Query: 98 QSFAKNFGLYS 108
S++KNFGLY+
Sbjct: 242 SSYSKNFGLYN 252
>pdb|1ASB|A Chain A, The Structural Basis For The Reduced Activity Of The
D223a(D222a) Active Site Mutant Of E. Coli Aspartate
Aminotransferase
pdb|1ASC|A Chain A, The Structural Basis For The Reduced Activity Of The
D223a(D222a) Active Site Mutant Of E. Coli Aspartate
Aminotransferase
pdb|1SPA|A Chain A, Role Of Asp222 In The Catalytic Mechanism Of Escherichia
Coli Aspartate Aminotransferase: The Amino Acid Residue
Which Enhances The Function Of The Enzyme-Bound Coenzyme
Pyridoxal 5'-Phosphate
Length = 396
Score = 60.8 bits (146), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/69 (50%), Positives = 44/69 (63%), Gaps = 2/69 (2%)
Query: 40 GCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQS 99
G DPT +QW+ LAQL E+ L F AYQGFA G LE DA +R FA E + + S
Sbjct: 186 GIDPTLEQWQTLAQLSVEKGWL-PLFAFAYQGFARG-LEEDAEGLRAFAAMHKELIVASS 243
Query: 100 FAKNFGLYS 108
++KNFGLY+
Sbjct: 244 YSKNFGLYN 252
>pdb|1ARH|A Chain A, Aspartate Aminotransferase, Y225rR386A MUTANT
pdb|1ARH|B Chain B, Aspartate Aminotransferase, Y225rR386A MUTANT
Length = 396
Score = 60.8 bits (146), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/69 (50%), Positives = 44/69 (63%), Gaps = 2/69 (2%)
Query: 40 GCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQS 99
G DPT +QW+ LAQL E+ L FD A QGFA G LE DA +R FA E + + S
Sbjct: 186 GIDPTLEQWQTLAQLSVEKGWL-PLFDFARQGFARG-LEEDAEGLRAFAAMHKELIVASS 243
Query: 100 FAKNFGLYS 108
++KNFGLY+
Sbjct: 244 YSKNFGLYN 252
>pdb|3ZZJ|A Chain A, Structure Of An Engineered Aspartate Aminotransferase
pdb|3ZZK|A Chain A, Structure Of An Engineered Aspartate Aminotransferase
pdb|4A00|A Chain A, Structure Of An Engineered Aspartate Aminotransferase
Length = 396
Score = 60.8 bits (146), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/69 (50%), Positives = 44/69 (63%), Gaps = 2/69 (2%)
Query: 40 GCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQS 99
G DPT +QW+ LAQL E+ L FD A QGFA G LE DA +R FA E + + S
Sbjct: 186 GIDPTLEQWQTLAQLSVEKGWL-PLFDFAQQGFARG-LEEDAEGLRAFAAMHKELIVASS 243
Query: 100 FAKNFGLYS 108
++KNFGLY+
Sbjct: 244 YSKNFGLYN 252
>pdb|1TOJ|A Chain A, Hydrocinnamic Acid-Bound Structure Of Srhept Mutant Of E.
Coli Aspartate Aminotransferase
pdb|1TOK|A Chain A, Maleic Acid-bound Structure Of Srhept Mutant Of E. Coli
Aspartate Aminotransferase
pdb|1TOK|B Chain B, Maleic Acid-bound Structure Of Srhept Mutant Of E. Coli
Aspartate Aminotransferase
Length = 396
Score = 59.3 bits (142), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 34/69 (49%), Positives = 43/69 (62%), Gaps = 2/69 (2%)
Query: 40 GCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQS 99
G DPT +QW+ LAQL E+ L FD AYQGFA G LE DA +R FA E + + S
Sbjct: 186 GIDPTLEQWQTLAQLSVEKGWL-PLFDFAYQGFARG-LEEDAEGLRAFAAMHKELIVASS 243
Query: 100 FAKNFGLYS 108
++ NF LY+
Sbjct: 244 YSXNFALYN 252
>pdb|1TOG|A Chain A, Hydrocinnamic Acid-Bound Structure Of Srhept + A293d
Mutant Of E. Coli Aspartate Aminotransferase
pdb|1TOG|B Chain B, Hydrocinnamic Acid-Bound Structure Of Srhept + A293d
Mutant Of E. Coli Aspartate Aminotransferase
Length = 396
Score = 59.3 bits (142), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 34/69 (49%), Positives = 43/69 (62%), Gaps = 2/69 (2%)
Query: 40 GCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQS 99
G DPT +QW+ LAQL E+ L FD AYQGFA G LE DA +R FA E + + S
Sbjct: 186 GIDPTLEQWQTLAQLSVEKGWL-PLFDFAYQGFARG-LEEDAEGLRAFAAMHKELIVASS 243
Query: 100 FAKNFGLYS 108
++ NF LY+
Sbjct: 244 YSXNFALYN 252
>pdb|4F5H|A Chain A, Intercoversion Of Substrate Specificity: E. Coli Aspatate
Aminotransferase To Tyrosine Aminotransferase: Chimera
P3.
pdb|4F5H|B Chain B, Intercoversion Of Substrate Specificity: E. Coli Aspatate
Aminotransferase To Tyrosine Aminotransferase: Chimera
P3
Length = 406
Score = 58.5 bits (140), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 42/69 (60%), Gaps = 2/69 (2%)
Query: 40 GCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQS 99
G DPT +QW+ LAQL E+ L D AYQGF G LE DA +R FA E + + S
Sbjct: 196 GADPTLEQWQTLAQLSVEKGWL-PLIDFAYQGFGRG-LEEDAEGLRAFAAMHKELIVASS 253
Query: 100 FAKNFGLYS 108
++ NFGLY+
Sbjct: 254 YSXNFGLYN 262
>pdb|4F5F|A Chain A, Structure Of Aspartate Aminotransferase Conversion To
Tyrosine Aminotransferase: Chimera P1.
pdb|4F5F|B Chain B, Structure Of Aspartate Aminotransferase Conversion To
Tyrosine Aminotransferase: Chimera P1
Length = 406
Score = 58.5 bits (140), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 42/69 (60%), Gaps = 2/69 (2%)
Query: 40 GCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQS 99
G DPT +QW+ LAQL E+ L D AYQGF G LE DA +R FA E + + S
Sbjct: 196 GIDPTLEQWQTLAQLSVEKGWL-PLIDFAYQGFGRG-LEEDAEGLRAFAAMHKELIVASS 253
Query: 100 FAKNFGLYS 108
++ NFGLY+
Sbjct: 254 YSXNFGLYN 262
>pdb|4F5J|A Chain A, Rational Design And Directed Evolution For Conversion Of
Substrate Specificity From E.coli Aspartate
Aminotransferase To Tyrosine Aminotransferase: Mutant
P5.
pdb|4F5J|B Chain B, Rational Design And Directed Evolution For Conversion Of
Substrate Specificity From E.coli Aspartate
Aminotransferase To Tyrosine Aminotransferase: Mutant P5
Length = 406
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Query: 40 GCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQS 99
G DPT +QW+ LAQL E+ L D AYQGF G LE DA +R FA E + + S
Sbjct: 196 GADPTLEQWQTLAQLSVEKGWL-PLIDIAYQGFGRG-LEEDAEGLRAFAAMHKELIVASS 253
Query: 100 FAKNFGLYS 108
+ NFGLY+
Sbjct: 254 CSXNFGLYN 262
>pdb|4F5G|A Chain A, Rational Design And Directed Evolution Of E. Coli Apartate
Aminotransferase To Tyrosine Aminotransferase: Mutant
P2.
pdb|4F5G|B Chain B, Rational Design And Directed Evolution Of E. Coli Apartate
Aminotransferase To Tyrosine Aminotransferase: Mutant P2
Length = 406
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Query: 40 GCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQS 99
G DPT +QW+ LAQL E+ L D AYQGF G LE DA +R FA E + + S
Sbjct: 196 GADPTLEQWQTLAQLSVEKGWL-PLIDIAYQGFGRG-LEEDAEGLRAFAAMHKELIVASS 253
Query: 100 FAKNFGLYS 108
+ NFGLY+
Sbjct: 254 CSXNFGLYN 262
>pdb|4F5K|A Chain A, Substrate Specificity Conversion Of Aspartate
Aminotransferase To Tyrosine Aminotransferase By The
Janus Algorithm: Chimera P6.
pdb|4F5K|B Chain B, Substrate Specificity Conversion Of Aspartate
Aminotransferase To Tyrosine Aminotransferase By The
Janus Algorithm: Chimera P6
Length = 406
Score = 54.3 bits (129), Expect = 2e-08, Method: Composition-based stats.
Identities = 32/69 (46%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Query: 40 GCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQS 99
G DPT +QW+ LAQL E+ L D AYQGF G LE DA +R FA E + + S
Sbjct: 196 GADPTLEQWQTLAQLSVEKGWL-PLIDIAYQGFGRG-LEEDAEGLRAFAAMHKELIVASS 253
Query: 100 FAKNFGLYS 108
+ NF LY+
Sbjct: 254 CSXNFSLYN 262
>pdb|4F5I|A Chain A, Substrate Specificity Conversion Of E. Coli
Pyridoxal-5'-phosphate Dependent Aspartate
Aminotransferase To Tyrosine Aminotransferase: Chimera
P4.
pdb|4F5I|B Chain B, Substrate Specificity Conversion Of E. Coli
Pyridoxal-5'-phosphate Dependent Aspartate
Aminotransferase To Tyrosine Aminotransferase: Chimera
P4
Length = 406
Score = 53.9 bits (128), Expect = 2e-08, Method: Composition-based stats.
Identities = 32/69 (46%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Query: 40 GCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQS 99
G DPT +QW+ LAQL E+ L D AYQGF G LE DA +R FA E + + S
Sbjct: 196 GIDPTLEQWQTLAQLSVEKGWL-PLIDIAYQGFGRG-LEEDAEGLRAFAAMHKELIVASS 253
Query: 100 FAKNFGLYS 108
+ NF LY+
Sbjct: 254 CSXNFSLYN 262
>pdb|1AY4|A Chain A, Aromatic Amino Acid Aminotransferase Without Substrate
pdb|1AY4|B Chain B, Aromatic Amino Acid Aminotransferase Without Substrate
pdb|1AY5|A Chain A, Aromatic Amino Acid Aminotransferase Complex With Maleate
pdb|1AY5|B Chain B, Aromatic Amino Acid Aminotransferase Complex With Maleate
pdb|1AY8|A Chain A, Aromatic Amino Acid Aminotransferase Complex With
3-Phenylpropionate
pdb|1AY8|B Chain B, Aromatic Amino Acid Aminotransferase Complex With
3-Phenylpropionate
pdb|2AY1|A Chain A, Aromatic Amino Acid Aminotransferase With
4-aminohydrocinnamic Acid
pdb|2AY1|B Chain B, Aromatic Amino Acid Aminotransferase With
4-aminohydrocinnamic Acid
pdb|2AY2|A Chain A, Aromatic Amino Acid Aminotransferase With Cyclohexane
Propionic Acid
pdb|2AY2|B Chain B, Aromatic Amino Acid Aminotransferase With Cyclohexane
Propionic Acid
pdb|2AY3|A Chain A, Aromatic Amino Acid Aminotransferase With
3-(3,4-Dimethoxyphenyl) Propionic Acid
pdb|2AY3|B Chain B, Aromatic Amino Acid Aminotransferase With
3-(3,4-Dimethoxyphenyl) Propionic Acid
pdb|2AY4|A Chain A, Aromatic Amino Acid Aminotransferase With
3-(P-Tolyl)propionic Acid
pdb|2AY4|B Chain B, Aromatic Amino Acid Aminotransferase With
3-(P-Tolyl)propionic Acid
pdb|2AY5|A Chain A, Aromatic Amino Acid Aminotransferase With
3-indolepropionic Acid
pdb|2AY5|B Chain B, Aromatic Amino Acid Aminotransferase With
3-indolepropionic Acid
pdb|2AY6|A Chain A, Aromatic Amino Acid Aminotransferase With 3-Indolebutyric
Acid
pdb|2AY6|B Chain B, Aromatic Amino Acid Aminotransferase With 3-Indolebutyric
Acid
pdb|2AY7|A Chain A, Aromatic Amino Acid Aminotransferase With 4-Phenylbutyric
Acid
pdb|2AY7|B Chain B, Aromatic Amino Acid Aminotransferase With 4-Phenylbutyric
Acid
pdb|2AY8|A Chain A, Aromatic Amino Acid Aminotransferase With
4-(2-Thienyl)butyric Acid
pdb|2AY8|B Chain B, Aromatic Amino Acid Aminotransferase With
4-(2-Thienyl)butyric Acid
pdb|2AY9|A Chain A, Aromatic Amino Acid Aminotransferase With 5-Phenylvaleric
Acid
pdb|2AY9|B Chain B, Aromatic Amino Acid Aminotransferase With 5-Phenylvaleric
Acid
Length = 394
Score = 50.1 bits (118), Expect = 3e-07, Method: Composition-based stats.
Identities = 28/68 (41%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 40 GCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQS 99
G + T DQW ++A + E+ D AYQGF G LE DA R A E L + S
Sbjct: 183 GANLTLDQWAEIASIL-EKTGALPLIDLAYQGFGDG-LEEDAAGTRLIASRIPEVLIAAS 240
Query: 100 FAKNFGLY 107
+KNFG+Y
Sbjct: 241 CSKNFGIY 248
>pdb|3K7Y|A Chain A, Aspartate Aminotransferase Of Plasmodium Falciparum
Length = 405
Score = 47.8 bits (112), Expect = 2e-06, Method: Composition-based stats.
Identities = 20/45 (44%), Positives = 26/45 (57%)
Query: 63 VFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNFGLY 107
+ FD AYQGF +LE D +R F ++ F QSF+KN LY
Sbjct: 210 IIFDIAYQGFGHTNLEEDVLLIRKFEEKNIAFSVCQSFSKNMSLY 254
>pdb|4F4E|A Chain A, Crystal Structure Of Aromatic-Amino-Acid
Aminotransferase From Burkholderia Pseudomallei
Covalently Bound To Pyridoxal Phosphate
pdb|4F4E|B Chain B, Crystal Structure Of Aromatic-Amino-Acid
Aminotransferase From Burkholderia Pseudomallei
Covalently Bound To Pyridoxal Phosphate
Length = 420
Score = 32.7 bits (73), Expect = 0.048, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 21/35 (60%)
Query: 5 SSFSSVQQGPPIEVFAVNKAYLDDPHPKKVNLSVG 39
S FS+V+ P + +N+A+ D P KVNL VG
Sbjct: 23 SLFSAVELAPRDPILGLNEAFNADTRPTKVNLGVG 57
Score = 31.2 bits (69), Expect = 0.17, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 40 GCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFA 83
G D + QW Q+ ++ K R L F D AYQGF +E DA A
Sbjct: 209 GVDLNDAQWAQVVEVVKAR-RLVPFLDIAYQGFGE-SIEADAAA 250
>pdb|4EFF|A Chain A, Crystal Structure Of Aromatic-Amino-Acid
Aminotransferase From Burkholderia Pseudomallei
Length = 420
Score = 32.7 bits (73), Expect = 0.048, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 21/35 (60%)
Query: 5 SSFSSVQQGPPIEVFAVNKAYLDDPHPKKVNLSVG 39
S FS+V+ P + +N+A+ D P KVNL VG
Sbjct: 23 SLFSAVELAPRDPILGLNEAFNADTRPTKVNLGVG 57
Score = 26.9 bits (58), Expect = 2.7, Method: Composition-based stats.
Identities = 30/68 (44%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Query: 40 GCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQS 99
G D + QW Q+ ++ K R L F D AYQGF +E DA AVR FA S S
Sbjct: 209 GVDLNDAQWAQVVEVVKAR-RLVPFLDIAYQGFGE-SIEADAAAVRLFAAANLNVFVSSS 266
Query: 100 FAKNFGLY 107
F+K+F LY
Sbjct: 267 FSKSFSLY 274
>pdb|3JY6|A Chain A, Crystal Structure Of Laci Transcriptional Regulator From
Lactobacillus Brevis
pdb|3JY6|B Chain B, Crystal Structure Of Laci Transcriptional Regulator From
Lactobacillus Brevis
pdb|3JY6|C Chain C, Crystal Structure Of Laci Transcriptional Regulator From
Lactobacillus Brevis
pdb|3JY6|D Chain D, Crystal Structure Of Laci Transcriptional Regulator From
Lactobacillus Brevis
Length = 276
Score = 29.6 bits (65), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 8/72 (11%)
Query: 32 KKVNLSVGGCDP--TEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQ 89
K + + V D + + +K ++ + + R + V FD A+ D+ER+ +R
Sbjct: 8 KLIAVIVANIDDYFSTELFKGISSILESRGYIGVLFD------ANADIEREKTLLRAIGS 61
Query: 90 EGFEFLCSQSFA 101
GF+ L QSF+
Sbjct: 62 RGFDGLILQSFS 73
>pdb|2WNH|A Chain A, Crystal Structure Analysis Of Klebsiella Sp Asr1 Phytase
pdb|2WNH|B Chain B, Crystal Structure Analysis Of Klebsiella Sp Asr1 Phytase
Length = 418
Score = 26.6 bits (57), Expect = 3.6, Method: Composition-based stats.
Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 10/73 (13%)
Query: 21 VNKAYLDDPHPKKVNLSVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQG------FAS 74
VNK + H +++ L GC E + + + L + R + D A+ G +A+
Sbjct: 65 VNKGREEGQHYRQLGLLQAGCPTAESIYVRASPLQRTRATAQALVDGAFPGCGVAIHYAN 124
Query: 75 GD----LERDAFA 83
GD + D FA
Sbjct: 125 GDADPLFQTDKFA 137
>pdb|2WNI|A Chain A, Crystal Structure Analysis Of Klebsiella Sp Asr1 Phytase
pdb|2WNI|B Chain B, Crystal Structure Analysis Of Klebsiella Sp Asr1 Phytase
pdb|2WNI|C Chain C, Crystal Structure Analysis Of Klebsiella Sp Asr1 Phytase
pdb|2WNI|D Chain D, Crystal Structure Analysis Of Klebsiella Sp Asr1 Phytase
pdb|2WU0|A Chain A, Crystal Structure Analysis Of Klebsiella Sp Asr1 Phytase
pdb|2WU0|B Chain B, Crystal Structure Analysis Of Klebsiella Sp Asr1 Phytase
pdb|2WU0|C Chain C, Crystal Structure Analysis Of Klebsiella Sp Asr1 Phytase
pdb|2WU0|D Chain D, Crystal Structure Analysis Of Klebsiella Sp Asr1 Phytase
Length = 418
Score = 26.6 bits (57), Expect = 3.7, Method: Composition-based stats.
Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 10/73 (13%)
Query: 21 VNKAYLDDPHPKKVNLSVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQG------FAS 74
VNK + H +++ L GC E + + + L + R + D A+ G +A+
Sbjct: 65 VNKGREEGQHYRQLGLLQAGCPTAESIYVRASPLQRTRATAQALVDGAFPGCGVAIHYAN 124
Query: 75 GD----LERDAFA 83
GD + D FA
Sbjct: 125 GDADPLFQTDKFA 137
>pdb|4FE9|A Chain A, Crystal Structure Of Susf From Bacteroides
Thetaiotaomicron
Length = 470
Score = 25.4 bits (54), Expect = 7.4, Method: Composition-based stats.
Identities = 9/28 (32%), Positives = 20/28 (71%)
Query: 57 ERPSLFVFFDSAYQGFASGDLERDAFAV 84
E+P++++ D++Y G+ + +E+D F V
Sbjct: 366 EKPNVYLMGDTSYNGWDAQLVEQDLFTV 393
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,362,084
Number of Sequences: 62578
Number of extensions: 124345
Number of successful extensions: 408
Number of sequences better than 100.0: 65
Number of HSP's better than 100.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 237
Number of HSP's gapped (non-prelim): 81
length of query: 109
length of database: 14,973,337
effective HSP length: 73
effective length of query: 36
effective length of database: 10,405,143
effective search space: 374585148
effective search space used: 374585148
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)