Query psy207
Match_columns 109
No_of_seqs 196 out of 1258
Neff 6.7
Searched_HMMs 46136
Date Fri Aug 16 23:32:31 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy207.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/207hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1411|consensus 100.0 4.5E-32 9.8E-37 212.3 7.1 72 37-109 209-280 (427)
2 KOG1412|consensus 100.0 2.4E-29 5.2E-34 195.4 8.1 88 21-109 168-260 (410)
3 COG1448 TyrB Aspartate/tyrosin 99.9 4.5E-27 9.8E-32 185.6 8.4 86 22-109 163-253 (396)
4 PLN02397 aspartate transaminas 99.6 5.5E-15 1.2E-19 117.9 9.4 72 37-109 205-276 (423)
5 PTZ00376 aspartate aminotransf 99.6 1.1E-14 2.4E-19 115.0 9.5 77 32-109 177-258 (404)
6 PRK09257 aromatic amino acid a 99.5 2.6E-14 5.5E-19 112.4 9.3 76 32-109 173-253 (396)
7 COG0436 Aspartate/tyrosine/aro 99.5 3E-14 6.4E-19 113.6 6.1 77 30-109 163-243 (393)
8 PRK06425 histidinol-phosphate 99.4 2.8E-13 6E-18 104.5 7.4 76 29-109 121-200 (332)
9 TIGR03542 DAPAT_plant LL-diami 99.4 1.6E-13 3.5E-18 108.2 5.5 77 30-109 173-253 (402)
10 PRK07590 L,L-diaminopimelate a 99.4 4.4E-13 9.4E-18 106.0 5.9 78 29-109 175-256 (409)
11 COG0079 HisC Histidinol-phosph 99.4 7E-13 1.5E-17 104.8 5.9 71 30-109 145-219 (356)
12 PRK06348 aspartate aminotransf 99.4 8.5E-13 1.8E-17 103.4 6.3 76 30-109 162-241 (384)
13 PLN00143 tyrosine/nicotianamin 99.4 9.7E-13 2.1E-17 104.3 6.5 77 29-109 169-249 (409)
14 PRK06358 threonine-phosphate d 99.4 1.7E-12 3.6E-17 101.1 7.7 76 30-109 141-220 (354)
15 PRK07366 succinyldiaminopimela 99.4 6.2E-13 1.3E-17 104.1 5.3 78 30-109 165-246 (388)
16 PF00155 Aminotran_1_2: Aminot 99.4 1.2E-12 2.7E-17 100.5 6.6 70 37-109 159-228 (363)
17 PRK08056 threonine-phosphate d 99.3 2.9E-12 6.4E-17 99.5 7.9 75 29-109 141-219 (356)
18 KOG0633|consensus 99.3 8.8E-13 1.9E-17 101.6 4.5 91 10-109 135-234 (375)
19 TIGR01264 tyr_amTase_E tyrosin 99.3 2.3E-12 5E-17 101.4 6.3 76 30-109 168-247 (401)
20 PRK09276 LL-diaminopimelate am 99.3 1.9E-12 4.1E-17 101.1 5.3 77 30-109 166-246 (385)
21 PRK08354 putative aminotransfe 99.3 3.9E-12 8.5E-17 97.3 6.9 68 31-109 118-189 (311)
22 PRK08068 transaminase; Reviewe 99.3 1.9E-12 4.2E-17 101.4 5.4 77 30-109 167-247 (389)
23 PLN02187 rooty/superroot1 99.3 3.2E-12 6.9E-17 103.5 6.6 77 29-109 203-283 (462)
24 PRK07568 aspartate aminotransf 99.3 3.3E-12 7.1E-17 99.8 6.0 78 29-109 161-242 (397)
25 PLN00175 aminotransferase fami 99.3 3.8E-12 8.3E-17 101.3 6.4 76 30-109 187-266 (413)
26 PRK01688 histidinol-phosphate 99.3 3.7E-12 8.1E-17 99.0 5.9 72 30-109 145-220 (351)
27 PLN02656 tyrosine transaminase 99.3 5E-12 1.1E-16 100.2 6.7 77 29-109 168-248 (409)
28 PRK08960 hypothetical protein; 99.3 4.3E-12 9.4E-17 99.4 6.2 73 30-109 165-241 (387)
29 PLN00145 tyrosine/nicotianamin 99.3 4.9E-12 1.1E-16 101.3 6.4 77 29-109 189-269 (430)
30 PRK07683 aminotransferase A; V 99.3 4.7E-12 1E-16 99.4 6.1 76 30-109 161-240 (387)
31 PRK06108 aspartate aminotransf 99.3 4.4E-12 9.5E-17 98.4 5.7 78 30-109 158-239 (382)
32 PRK07681 aspartate aminotransf 99.3 3.7E-12 8.1E-17 100.2 5.3 77 30-109 166-246 (399)
33 PRK12414 putative aminotransfe 99.3 3.3E-12 7.1E-17 100.2 4.9 77 30-109 162-242 (384)
34 PRK06959 putative threonine-ph 99.3 8.5E-12 1.8E-16 96.9 6.9 70 32-109 132-205 (339)
35 PRK05957 aspartate aminotransf 99.3 6.4E-12 1.4E-16 98.7 6.2 77 30-109 160-240 (389)
36 PLN02368 alanine transaminase 99.3 1E-11 2.2E-16 99.3 7.4 78 31-109 211-299 (407)
37 PRK07324 transaminase; Validat 99.3 7.9E-12 1.7E-16 98.0 6.6 74 29-109 152-229 (373)
38 PRK07777 aminotransferase; Val 99.3 6.7E-12 1.5E-16 98.2 6.2 77 30-109 159-239 (387)
39 PRK04781 histidinol-phosphate 99.3 9.3E-12 2E-16 97.3 6.8 73 29-109 151-227 (364)
40 PRK07337 aminotransferase; Val 99.3 7.7E-12 1.7E-16 97.9 6.3 73 30-109 163-239 (388)
41 PRK05664 threonine-phosphate d 99.3 1E-11 2.2E-16 95.9 6.8 71 31-109 125-199 (330)
42 PRK07682 hypothetical protein; 99.3 5.1E-12 1.1E-16 98.5 5.2 76 30-109 154-233 (378)
43 PTZ00433 tyrosine aminotransfe 99.3 7.8E-12 1.7E-16 99.0 6.2 76 30-109 177-256 (412)
44 PRK08912 hypothetical protein; 99.3 5.5E-12 1.2E-16 98.7 5.3 77 30-109 159-239 (387)
45 TIGR01140 L_thr_O3P_dcar L-thr 99.3 1.5E-11 3.3E-16 94.8 7.4 72 31-109 126-201 (330)
46 PRK09105 putative aminotransfe 99.3 1.3E-11 2.8E-16 96.9 7.0 73 29-109 164-240 (370)
47 PRK08636 aspartate aminotransf 99.3 6.4E-12 1.4E-16 99.2 5.3 70 37-109 186-255 (403)
48 PRK09082 methionine aminotrans 99.3 6.5E-12 1.4E-16 98.5 5.3 77 30-109 163-243 (386)
49 PRK05942 aspartate aminotransf 99.3 6.2E-12 1.3E-16 98.9 5.0 78 29-109 169-250 (394)
50 TIGR03540 DapC_direct LL-diami 99.3 6.3E-12 1.4E-16 98.1 4.9 77 30-109 164-244 (383)
51 PRK06207 aspartate aminotransf 99.3 9.6E-12 2.1E-16 98.5 5.9 77 30-109 178-258 (405)
52 PRK09147 succinyldiaminopimela 99.2 1.4E-11 3.1E-16 96.7 6.5 79 30-109 166-252 (396)
53 TIGR01265 tyr_nico_aTase tyros 99.2 1.7E-11 3.8E-16 96.7 6.9 77 29-109 168-248 (403)
54 TIGR03538 DapC_gpp succinyldia 99.2 1.5E-11 3.3E-16 96.5 6.3 79 30-109 165-251 (393)
55 PLN02450 1-aminocyclopropane-1 99.2 2.2E-11 4.7E-16 98.7 7.3 78 30-109 191-279 (468)
56 PRK09148 aminotransferase; Val 99.2 1.3E-11 2.7E-16 97.8 5.4 77 30-109 165-245 (405)
57 TIGR03801 asp_4_decarbox aspar 99.2 2E-11 4.3E-16 100.8 6.7 75 28-109 238-317 (521)
58 PRK07865 N-succinyldiaminopime 99.2 1.4E-11 3.1E-16 95.7 5.3 77 30-109 148-230 (364)
59 PRK06855 aminotransferase; Val 99.2 3.4E-11 7.3E-16 96.4 7.4 76 30-109 171-250 (433)
60 PRK13355 bifunctional HTH-doma 99.2 2.3E-11 4.9E-16 99.3 6.4 77 29-109 280-360 (517)
61 PLN02376 1-aminocyclopropane-1 99.2 3.7E-11 8E-16 98.3 7.6 77 30-109 199-286 (496)
62 PRK07309 aromatic amino acid a 99.2 3.7E-11 7.9E-16 94.5 7.3 74 31-109 167-244 (391)
63 PLN02607 1-aminocyclopropane-1 99.2 4.3E-11 9.2E-16 96.7 7.9 79 30-109 200-286 (447)
64 PRK06290 aspartate aminotransf 99.2 1.6E-11 3.4E-16 97.9 5.2 76 30-109 179-258 (410)
65 PRK05166 histidinol-phosphate 99.2 2.3E-11 5.1E-16 94.9 6.1 76 30-109 159-238 (371)
66 PRK08175 aminotransferase; Val 99.2 1.7E-11 3.7E-16 96.4 5.1 77 30-109 164-244 (395)
67 PRK09275 aspartate aminotransf 99.2 2.9E-11 6.2E-16 100.0 6.1 75 28-109 239-318 (527)
68 PRK05839 hypothetical protein; 99.2 3.6E-11 7.7E-16 94.2 6.3 77 30-109 155-239 (374)
69 PRK07550 hypothetical protein; 99.2 3.7E-11 8E-16 94.0 6.1 75 30-109 163-243 (386)
70 PRK08637 hypothetical protein; 99.2 6.5E-11 1.4E-15 93.0 7.4 78 30-109 145-234 (388)
71 PRK01533 histidinol-phosphate 99.2 2.4E-11 5.2E-16 95.3 4.9 75 30-109 151-229 (366)
72 PRK04635 histidinol-phosphate 99.2 3.6E-11 7.7E-16 93.4 5.8 72 29-109 146-221 (354)
73 TIGR03539 DapC_actino succinyl 99.2 2.5E-11 5.4E-16 94.3 4.8 77 30-109 142-224 (357)
74 KOG0257|consensus 99.2 1.3E-11 2.8E-16 99.0 3.2 77 30-109 172-252 (420)
75 PTZ00377 alanine aminotransfer 99.2 7.1E-11 1.5E-15 95.6 7.2 79 30-109 218-307 (481)
76 PRK03158 histidinol-phosphate 99.2 5.9E-11 1.3E-15 91.8 6.3 76 29-109 150-229 (359)
77 PRK08153 histidinol-phosphate 99.2 5.7E-11 1.2E-15 92.9 6.1 73 29-109 154-230 (369)
78 PRK09265 aminotransferase AlaT 99.2 8.3E-11 1.8E-15 92.7 7.0 76 30-109 168-247 (404)
79 PRK15481 transcriptional regul 99.2 3.7E-11 8E-16 95.6 5.0 73 30-109 211-288 (431)
80 PLN02231 alanine transaminase 99.2 7.7E-11 1.7E-15 97.3 7.0 78 30-109 271-359 (534)
81 PRK14809 histidinol-phosphate 99.2 8.5E-11 1.8E-15 91.1 6.8 72 30-109 154-229 (357)
82 TIGR03537 DapC succinyldiamino 99.2 8.3E-11 1.8E-15 91.1 6.7 74 30-109 136-213 (350)
83 PRK08363 alanine aminotransfer 99.1 8.4E-11 1.8E-15 92.5 6.4 75 30-109 166-244 (398)
84 PRK14808 histidinol-phosphate 99.1 1E-10 2.2E-15 90.6 6.7 61 37-109 149-209 (335)
85 PRK02610 histidinol-phosphate 99.1 1.4E-10 3E-15 90.8 7.1 70 30-109 168-241 (374)
86 PRK08361 aspartate aminotransf 99.1 7.7E-11 1.7E-15 92.5 5.0 75 30-109 166-244 (391)
87 PLN03026 histidinol-phosphate 99.1 1.7E-10 3.6E-15 90.8 6.4 70 29-109 174-247 (380)
88 PRK03967 histidinol-phosphate 99.1 2E-10 4.3E-15 88.9 6.7 69 29-109 139-211 (337)
89 PRK06836 aspartate aminotransf 99.1 1.8E-10 4E-15 90.7 6.5 75 29-109 167-251 (394)
90 PRK06107 aspartate aminotransf 99.1 1.8E-10 3.9E-15 90.9 6.4 78 30-109 166-248 (402)
91 PRK07392 threonine-phosphate d 99.1 3.2E-10 6.8E-15 88.1 7.2 65 37-109 159-223 (360)
92 PRK03321 putative aminotransfe 99.1 1.9E-10 4.1E-15 88.8 5.6 76 29-109 144-223 (352)
93 PRK05764 aspartate aminotransf 99.1 2.9E-10 6.3E-15 88.8 6.1 77 30-109 164-245 (393)
94 PRK06225 aspartate aminotransf 99.0 6.1E-10 1.3E-14 87.0 6.4 72 30-109 157-232 (380)
95 PRK02731 histidinol-phosphate 99.0 6.1E-10 1.3E-14 86.3 6.3 76 29-109 153-232 (367)
96 PRK03317 histidinol-phosphate 99.0 9.1E-10 2E-14 85.7 7.1 72 30-109 160-235 (368)
97 PRK05387 histidinol-phosphate 99.0 9.1E-10 2E-14 84.7 6.6 69 31-109 145-217 (353)
98 PRK09440 avtA valine--pyruvate 99.0 9.7E-10 2.1E-14 86.8 6.9 74 29-109 178-255 (416)
99 PRK04870 histidinol-phosphate 99.0 8.6E-10 1.9E-14 85.3 6.3 69 29-109 152-224 (356)
100 PRK14807 histidinol-phosphate 99.0 2.1E-09 4.7E-14 83.3 7.5 69 30-109 148-220 (351)
101 PRK07908 hypothetical protein; 98.9 1.6E-09 3.4E-14 83.8 5.6 69 30-109 139-211 (349)
102 PLN02672 methionine S-methyltr 98.9 3.6E-09 7.7E-14 93.5 7.5 72 37-109 840-917 (1082)
103 PRK00950 histidinol-phosphate 98.9 5.3E-09 1.1E-13 80.7 7.3 69 30-109 158-230 (361)
104 COG1168 MalY Bifunctional PLP- 98.8 6.5E-09 1.4E-13 82.9 6.0 85 22-109 150-239 (388)
105 TIGR01141 hisC histidinol-phos 98.8 1.2E-08 2.6E-13 78.4 6.4 73 28-108 140-216 (346)
106 cd00609 AAT_like Aspartate ami 98.7 3.1E-08 6.6E-13 74.6 6.0 78 27-108 129-210 (350)
107 KOG0256|consensus 98.3 2.2E-06 4.8E-11 69.4 7.1 87 22-109 218-310 (471)
108 PRK10534 L-threonine aldolase; 98.3 1.2E-06 2.7E-11 67.0 4.8 71 31-107 130-202 (333)
109 KOG0259|consensus 98.3 1.5E-06 3.3E-11 69.8 5.2 82 23-108 192-277 (447)
110 PRK07505 hypothetical protein; 98.3 3E-06 6.6E-11 66.9 6.9 74 30-108 179-257 (402)
111 COG1167 ARO8 Transcriptional r 98.2 4.3E-06 9.2E-11 68.0 7.7 72 30-105 226-302 (459)
112 cd06502 TA_like Low-specificit 98.2 2.2E-06 4.8E-11 65.2 5.0 72 30-108 127-202 (338)
113 PRK07049 methionine gamma-lyas 98.2 4E-06 8.7E-11 67.6 6.3 68 29-108 173-248 (427)
114 TIGR03576 pyridox_MJ0158 pyrid 98.2 4.6E-06 1E-10 65.5 6.5 68 30-104 136-206 (346)
115 TIGR00858 bioF 8-amino-7-oxono 98.1 5.5E-06 1.2E-10 63.1 5.5 66 37-108 157-223 (360)
116 PRK13392 5-aminolevulinate syn 98.1 6.3E-06 1.4E-10 65.2 5.9 71 30-108 178-254 (410)
117 PRK05958 8-amino-7-oxononanoat 98.1 1.6E-05 3.4E-10 61.4 7.1 66 37-108 179-245 (385)
118 TIGR00707 argD acetylornithine 98.0 1.3E-05 2.9E-10 62.1 6.5 70 30-108 170-244 (379)
119 PLN02242 methionine gamma-lyas 98.0 1.2E-05 2.6E-10 64.7 6.3 62 31-108 164-229 (418)
120 PRK04073 rocD ornithine--oxo-a 98.0 1.4E-05 3.1E-10 63.1 6.5 64 37-108 197-261 (396)
121 TIGR01825 gly_Cac_T_rel pyrido 98.0 1.2E-05 2.5E-10 62.5 5.7 66 37-108 174-239 (385)
122 PRK02627 acetylornithine amino 98.0 1E-05 2.3E-10 63.1 5.2 70 30-108 182-256 (396)
123 PLN02721 threonine aldolase 97.9 2.3E-05 5E-10 59.9 6.2 40 30-70 137-181 (353)
124 PRK03244 argD acetylornithine 97.9 2.3E-05 4.9E-10 61.6 5.7 61 37-105 194-255 (398)
125 PRK09064 5-aminolevulinate syn 97.9 2.5E-05 5.5E-10 61.5 5.9 70 31-108 179-254 (407)
126 PRK05093 argD bifunctional N-s 97.9 2.1E-05 4.6E-10 62.2 5.4 63 37-108 194-258 (403)
127 PRK02936 argD acetylornithine 97.8 4.5E-05 9.8E-10 59.4 6.2 63 37-108 178-241 (377)
128 PRK01278 argD acetylornithine 97.8 2.1E-05 4.5E-10 61.8 4.2 68 30-105 175-247 (389)
129 cd00610 OAT_like Acetyl ornith 97.8 0.0001 2.2E-09 57.7 7.8 62 37-106 202-264 (413)
130 COG3977 Alanine-alpha-ketoisov 97.8 4.8E-05 1.1E-09 60.1 5.5 72 30-108 179-254 (417)
131 PRK06234 methionine gamma-lyas 97.8 5.9E-05 1.3E-09 60.2 6.1 66 29-108 148-218 (400)
132 PRK07504 O-succinylhomoserine 97.8 6.3E-05 1.4E-09 60.0 6.3 65 29-108 149-217 (398)
133 PRK06460 hypothetical protein; 97.8 6.1E-05 1.3E-09 59.6 6.1 62 29-105 129-194 (376)
134 TIGR01328 met_gam_lyase methio 97.7 7.4E-05 1.6E-09 59.5 6.2 65 29-108 143-211 (391)
135 PLN02822 serine palmitoyltrans 97.7 7.8E-05 1.7E-09 61.0 6.2 66 37-108 256-322 (481)
136 PRK08045 cystathionine gamma-s 97.7 7.9E-05 1.7E-09 59.4 5.9 62 29-105 136-201 (386)
137 PRK05968 hypothetical protein; 97.7 0.00014 3.1E-09 57.8 7.0 65 30-106 147-212 (389)
138 cd06454 KBL_like KBL_like; thi 97.7 9.1E-05 2E-09 56.4 5.5 65 37-108 143-208 (349)
139 TIGR01821 5aminolev_synth 5-am 97.7 9.1E-05 2E-09 58.4 5.6 64 37-108 188-253 (402)
140 PRK02948 cysteine desulfurase; 97.7 8.6E-05 1.9E-09 57.9 5.2 65 30-108 138-206 (381)
141 cd00615 Orn_deC_like Ornithine 97.6 0.00013 2.9E-09 55.5 5.8 73 22-105 146-223 (294)
142 PRK07503 methionine gamma-lyas 97.6 0.00014 3.1E-09 58.1 6.2 65 29-108 149-217 (403)
143 cd01494 AAT_I Aspartate aminot 97.6 0.00017 3.6E-09 48.7 5.5 70 28-108 90-163 (170)
144 TIGR02080 O_succ_thio_ly O-suc 97.6 0.00016 3.5E-09 57.5 6.0 62 29-105 135-200 (382)
145 PRK08249 cystathionine gamma-s 97.6 0.00016 3.5E-09 57.8 5.8 63 29-106 148-214 (398)
146 PLN02955 8-amino-7-oxononanoat 97.6 0.0002 4.2E-09 59.1 6.4 89 13-108 232-325 (476)
147 PRK08360 4-aminobutyrate amino 97.6 0.00016 3.5E-09 58.6 5.8 63 37-108 215-278 (443)
148 PRK06767 methionine gamma-lyas 97.6 0.0002 4.3E-09 56.8 6.1 65 29-108 145-213 (386)
149 COG1448 TyrB Aspartate/tyrosin 97.6 3.9E-05 8.3E-10 61.7 2.0 36 6-41 1-36 (396)
150 TIGR01326 OAH_OAS_sulfhy OAH/O 97.6 0.00022 4.7E-09 57.3 6.3 64 30-108 142-209 (418)
151 PRK08133 O-succinylhomoserine 97.5 0.0002 4.4E-09 56.9 6.0 65 29-108 145-213 (390)
152 PRK08247 cystathionine gamma-s 97.5 0.00027 5.9E-09 55.6 6.6 65 29-105 135-200 (366)
153 PLN02483 serine palmitoyltrans 97.5 0.00019 4E-09 58.9 5.8 61 45-108 256-317 (489)
154 PTZ00125 ornithine aminotransf 97.5 0.00035 7.7E-09 54.8 7.1 69 30-106 178-251 (400)
155 PRK06939 2-amino-3-ketobutyrat 97.5 0.00012 2.5E-09 56.9 4.2 60 37-104 185-246 (397)
156 TIGR00713 hemL glutamate-1-sem 97.5 0.00018 4E-09 57.1 5.3 60 39-108 208-268 (423)
157 PRK05937 8-amino-7-oxononanoat 97.5 0.00027 5.8E-09 55.4 6.0 64 37-108 154-218 (370)
158 KOG0258|consensus 97.5 0.00024 5.3E-09 57.6 5.7 77 27-104 212-298 (475)
159 PLN02624 ornithine-delta-amino 97.5 0.00045 9.7E-09 56.5 7.3 64 37-108 235-299 (474)
160 cd06452 SepCysS Sep-tRNA:Cys-t 97.5 0.00013 2.8E-09 56.6 4.0 64 30-107 139-206 (361)
161 PRK13393 5-aminolevulinate syn 97.5 0.00032 7E-09 55.5 6.1 64 37-108 188-253 (406)
162 PRK07811 cystathionine gamma-s 97.5 0.00022 4.8E-09 56.7 5.2 64 29-107 145-212 (388)
163 PRK06777 4-aminobutyrate amino 97.4 0.00034 7.3E-09 56.2 5.9 63 37-108 209-272 (421)
164 PRK07269 cystathionine gamma-s 97.4 0.00021 4.6E-09 56.5 4.6 62 29-105 135-200 (364)
165 PRK08064 cystathionine beta-ly 97.4 0.00026 5.6E-09 56.4 5.1 62 29-105 137-202 (390)
166 TIGR02539 SepCysS Sep-tRNA:Cys 97.4 0.00032 6.9E-09 55.0 5.4 65 30-108 146-214 (370)
167 TIGR01822 2am3keto_CoA 2-amino 97.4 0.00044 9.6E-09 53.9 6.2 69 30-105 170-243 (393)
168 PRK07671 cystathionine beta-ly 97.4 0.00041 8.8E-09 55.1 5.8 62 29-105 133-198 (377)
169 PRK06084 O-acetylhomoserine am 97.4 0.0006 1.3E-08 55.1 6.7 65 29-108 142-210 (425)
170 PRK12381 bifunctional succinyl 97.4 0.00047 1E-08 54.8 6.0 67 31-105 184-255 (406)
171 TIGR00700 GABAtrnsam 4-aminobu 97.3 0.00047 1E-08 55.2 5.6 63 37-108 208-271 (420)
172 TIGR00709 dat 2,4-diaminobutyr 97.3 0.00069 1.5E-08 54.8 6.5 61 37-106 218-279 (442)
173 TIGR01325 O_suc_HS_sulf O-succ 97.3 0.00053 1.1E-08 54.3 5.5 65 29-108 138-206 (380)
174 PRK05939 hypothetical protein; 97.3 0.00072 1.6E-08 54.1 6.3 64 29-108 130-198 (397)
175 PRK13479 2-aminoethylphosphona 97.3 0.00085 1.8E-08 52.0 6.6 66 29-108 130-200 (368)
176 PRK07179 hypothetical protein; 97.3 0.00051 1.1E-08 54.3 5.3 63 37-106 192-255 (407)
177 TIGR03246 arg_catab_astC succi 97.3 0.00051 1.1E-08 54.5 5.3 67 31-105 180-251 (397)
178 TIGR01979 sufS cysteine desulf 97.3 0.00058 1.3E-08 53.5 5.6 66 29-108 158-227 (403)
179 KOG1412|consensus 97.3 9.8E-05 2.1E-09 58.6 1.0 41 4-44 3-43 (410)
180 PRK09792 4-aminobutyrate trans 97.3 0.0006 1.3E-08 54.8 5.5 61 37-105 209-270 (421)
181 TIGR03301 PhnW-AepZ 2-aminoeth 97.2 0.00066 1.4E-08 51.7 5.3 58 37-108 136-194 (355)
182 PRK08776 cystathionine gamma-s 97.2 0.00062 1.3E-08 54.6 5.2 64 29-107 144-211 (405)
183 cd00614 CGS_like CGS_like: Cys 97.2 0.00098 2.1E-08 52.4 6.2 63 30-107 125-191 (369)
184 PRK13238 tnaA tryptophanase/L- 97.2 0.00048 1E-08 56.3 4.4 38 31-69 178-220 (460)
185 PRK04260 acetylornithine amino 97.2 0.00085 1.8E-08 52.5 5.6 61 37-105 176-237 (375)
186 PRK07050 cystathionine beta-ly 97.2 0.0014 3.1E-08 52.3 6.9 65 29-105 149-214 (394)
187 PRK08088 4-aminobutyrate amino 97.2 0.00074 1.6E-08 54.1 5.2 61 37-105 211-271 (425)
188 PRK08861 cystathionine gamma-s 97.2 0.0009 1.9E-08 53.6 5.5 62 29-105 137-202 (388)
189 PRK00854 rocD ornithine--oxo-a 97.1 0.0012 2.6E-08 51.9 6.0 44 30-74 187-235 (401)
190 PRK07810 O-succinylhomoserine 97.1 0.0012 2.7E-08 52.8 6.1 65 29-108 154-222 (403)
191 PRK08574 cystathionine gamma-s 97.1 0.00089 1.9E-08 53.3 5.3 61 30-106 137-202 (385)
192 cd00378 SHMT Serine-glycine hy 97.1 0.00044 9.5E-09 54.2 3.5 66 29-104 160-226 (402)
193 TIGR01885 Orn_aminotrans ornit 97.1 0.0011 2.4E-08 52.4 5.5 63 37-107 197-260 (401)
194 PRK06918 4-aminobutyrate amino 97.1 0.001 2.2E-08 53.8 5.2 61 39-108 232-293 (451)
195 TIGR01976 am_tr_V_VC1184 cyste 97.0 0.0022 4.7E-08 50.1 6.3 63 30-106 156-222 (397)
196 TIGR02326 transamin_PhnW 2-ami 97.0 0.0018 3.9E-08 50.1 5.8 66 29-108 128-198 (363)
197 TIGR01324 cysta_beta_ly_B cyst 97.0 0.0023 4.9E-08 51.0 6.3 65 29-105 134-199 (377)
198 PRK05967 cystathionine beta-ly 97.0 0.003 6.6E-08 50.8 7.0 65 29-105 148-213 (395)
199 PRK06176 cystathionine gamma-s 97.0 0.0012 2.7E-08 52.4 4.6 63 29-106 133-199 (380)
200 PRK07582 cystathionine gamma-l 97.0 0.0018 3.9E-08 51.1 5.5 62 29-105 131-196 (366)
201 PRK10874 cysteine sulfinate de 96.9 0.0017 3.6E-08 51.0 5.2 66 29-108 159-228 (401)
202 PRK08248 O-acetylhomoserine am 96.9 0.0035 7.5E-08 50.8 7.0 65 29-108 148-216 (431)
203 PRK09295 bifunctional cysteine 96.9 0.0015 3.3E-08 51.5 4.8 66 29-108 163-232 (406)
204 TIGR03403 nifS_epsilon cystein 96.9 0.0029 6.4E-08 49.4 6.2 65 30-108 140-208 (382)
205 PRK08117 4-aminobutyrate amino 96.9 0.0026 5.6E-08 51.1 5.7 56 42-105 224-279 (433)
206 TIGR03392 FeS_syn_CsdA cystein 96.8 0.0033 7.1E-08 49.4 5.9 66 29-108 156-225 (398)
207 PRK00062 glutamate-1-semialdeh 96.8 0.0019 4.1E-08 51.9 4.5 59 38-105 209-268 (426)
208 PRK05994 O-acetylhomoserine am 96.7 0.0033 7.3E-08 50.7 5.6 63 29-106 147-213 (427)
209 PLN02509 cystathionine beta-ly 96.7 0.0061 1.3E-07 50.1 6.9 63 29-106 216-282 (464)
210 PLN02855 Bifunctional selenocy 96.7 0.0051 1.1E-07 48.8 6.1 65 30-108 173-241 (424)
211 PLN03227 serine palmitoyltrans 96.7 0.0053 1.2E-07 48.8 6.1 64 37-107 149-215 (392)
212 PRK04612 argD acetylornithine 96.6 0.0045 9.8E-08 49.7 5.6 56 42-105 204-259 (408)
213 TIGR03531 selenium_SpcS O-phos 96.5 0.0067 1.5E-07 49.7 6.0 64 40-108 216-279 (444)
214 cd06450 DOPA_deC_like DOPA dec 96.4 0.0051 1.1E-07 46.9 4.5 61 37-105 159-219 (345)
215 PRK09264 diaminobutyrate--2-ox 96.4 0.0089 1.9E-07 48.0 6.1 64 37-108 209-273 (425)
216 PLN00144 acetylornithine trans 96.4 0.0043 9.4E-08 49.2 4.2 61 37-105 178-239 (382)
217 PRK05964 adenosylmethionine--8 96.4 0.0078 1.7E-07 48.2 5.4 60 39-106 213-273 (423)
218 TIGR01329 cysta_beta_ly_E cyst 96.4 0.0085 1.8E-07 47.5 5.5 62 29-105 130-195 (378)
219 cd00617 Tnase_like Tryptophana 96.3 0.0018 3.9E-08 52.7 1.7 37 31-68 153-194 (431)
220 PRK08593 4-aminobutyrate amino 96.3 0.011 2.4E-07 48.0 5.9 61 37-105 218-279 (445)
221 PRK09028 cystathionine beta-ly 96.2 0.013 2.8E-07 47.1 6.1 65 29-105 145-210 (394)
222 cd00613 GDC-P Glycine cleavage 96.2 0.0096 2.1E-07 46.4 5.0 63 29-104 158-223 (398)
223 PRK06541 hypothetical protein; 96.2 0.012 2.5E-07 48.1 5.6 60 37-105 232-293 (460)
224 KOG0634|consensus 96.2 0.0064 1.4E-07 49.9 4.0 68 37-105 215-298 (472)
225 PRK00011 glyA serine hydroxyme 96.1 0.012 2.5E-07 46.6 5.2 64 30-104 165-230 (416)
226 TIGR03235 DNA_S_dndA cysteine 96.1 0.017 3.6E-07 44.6 5.7 65 30-108 138-206 (353)
227 PRK09331 Sep-tRNA:Cys-tRNA syn 96.0 0.013 2.9E-07 46.1 5.0 66 30-106 158-224 (387)
228 TIGR02407 ectoine_ectB diamino 95.9 0.016 3.5E-07 46.4 5.3 61 37-106 205-267 (412)
229 PLN02409 serine--glyoxylate am 95.9 0.025 5.4E-07 44.9 6.3 65 30-106 137-205 (401)
230 PF12897 Aminotran_MocR: Alani 95.8 0.025 5.3E-07 46.1 5.8 93 10-103 151-255 (425)
231 PRK06702 O-acetylhomoserine am 95.8 0.016 3.5E-07 47.2 4.7 65 29-108 146-219 (432)
232 PRK06058 4-aminobutyrate amino 95.7 0.04 8.6E-07 44.6 6.6 55 42-105 236-291 (443)
233 PRK03715 argD acetylornithine 95.7 0.029 6.2E-07 44.8 5.6 60 37-105 190-251 (395)
234 PF06838 Met_gamma_lyase: Meth 95.7 0.045 9.7E-07 44.3 6.7 87 7-105 131-225 (403)
235 cd06453 SufS_like Cysteine des 95.6 0.027 5.8E-07 43.5 5.2 65 30-108 139-207 (373)
236 PRK07495 4-aminobutyrate amino 95.6 0.013 2.8E-07 47.3 3.5 59 39-105 211-270 (425)
237 COG0156 BioF 7-keto-8-aminopel 95.5 0.039 8.4E-07 44.6 6.0 74 32-108 172-248 (388)
238 PRK05769 4-aminobutyrate amino 95.3 0.03 6.6E-07 45.4 4.8 56 42-105 238-293 (441)
239 TIGR01437 selA_rel uncharacter 95.3 0.037 8E-07 43.6 5.1 52 37-104 160-211 (363)
240 PRK07812 O-acetylhomoserine am 95.3 0.05 1.1E-06 44.3 5.8 65 29-108 154-222 (436)
241 cd06451 AGAT_like Alanine-glyo 95.2 0.055 1.2E-06 41.5 5.7 63 30-106 124-190 (356)
242 PRK14012 cysteine desulfurase; 95.1 0.055 1.2E-06 42.7 5.5 66 29-108 143-212 (404)
243 PRK08297 L-lysine aminotransfe 95.0 0.08 1.7E-06 43.0 6.3 59 41-107 241-299 (443)
244 PRK06173 adenosylmethionine--8 94.8 0.076 1.6E-06 43.0 5.6 56 42-105 224-279 (429)
245 TIGR00508 bioA adenosylmethion 94.7 0.067 1.5E-06 43.2 5.2 56 42-105 225-280 (427)
246 PRK00615 glutamate-1-semialdeh 94.5 0.11 2.4E-06 42.2 5.9 55 42-105 218-272 (433)
247 PRK04013 argD acetylornithine/ 94.0 0.14 3E-06 40.7 5.4 56 41-105 178-233 (364)
248 PRK11658 UDP-4-amino-4-deoxy-L 93.9 0.068 1.5E-06 42.2 3.6 41 30-74 121-163 (379)
249 PRK00451 glycine dehydrogenase 93.9 0.1 2.2E-06 41.8 4.6 65 29-108 203-274 (447)
250 PF01212 Beta_elim_lyase: Beta 93.9 0.083 1.8E-06 40.9 3.9 74 29-108 123-201 (290)
251 PRK11522 putrescine--2-oxoglut 93.7 0.27 5.8E-06 40.3 6.8 58 39-105 244-303 (459)
252 PRK06082 4-aminobutyrate amino 93.6 0.21 4.6E-06 40.8 6.0 60 37-105 240-300 (459)
253 PRK06209 glutamate-1-semialdeh 93.5 0.43 9.3E-06 38.5 7.6 60 37-105 195-254 (431)
254 TIGR03251 LAT_fam L-lysine 6-t 93.5 0.25 5.5E-06 39.9 6.2 56 41-104 234-289 (431)
255 TIGR03402 FeS_nifS cysteine de 93.4 0.19 4E-06 39.1 5.2 66 29-108 135-204 (379)
256 TIGR03372 putres_am_tran putre 93.4 0.21 4.5E-06 40.8 5.6 60 37-105 235-296 (442)
257 PRK05630 adenosylmethionine--8 93.3 0.22 4.7E-06 40.3 5.5 58 39-104 214-272 (422)
258 TIGR02006 IscS cysteine desulf 93.1 0.22 4.8E-06 39.3 5.2 65 30-108 142-210 (402)
259 PRK05639 4-aminobutyrate amino 93.0 0.3 6.6E-06 39.9 6.0 60 37-105 233-294 (457)
260 COG0626 MetC Cystathionine bet 92.8 0.29 6.3E-06 39.8 5.6 66 29-106 148-214 (396)
261 PRK07678 aminotransferase; Val 92.5 0.3 6.5E-06 39.7 5.4 56 41-105 229-285 (451)
262 PF01053 Cys_Met_Meta_PP: Cys/ 92.5 0.3 6.5E-06 39.3 5.3 64 30-105 140-205 (386)
263 PRK13520 L-tyrosine decarboxyl 92.5 0.15 3.3E-06 39.1 3.5 33 37-73 162-194 (371)
264 PRK07986 adenosylmethionine--8 92.4 0.19 4.2E-06 40.7 4.1 55 42-105 222-277 (428)
265 PLN02482 glutamate-1-semialdeh 92.3 0.34 7.4E-06 39.9 5.5 56 41-105 262-317 (474)
266 PRK13360 omega amino acid--pyr 92.2 0.26 5.7E-06 40.0 4.7 55 42-105 232-287 (442)
267 PLN02760 4-aminobutyrate:pyruv 92.2 0.31 6.7E-06 40.4 5.1 56 41-105 276-332 (504)
268 PF00202 Aminotran_3: Aminotra 92.1 0.13 2.7E-06 40.3 2.6 56 41-105 193-249 (339)
269 PRK07480 putative aminotransfe 91.9 0.39 8.4E-06 39.2 5.3 58 39-105 232-291 (456)
270 PRK07036 hypothetical protein; 91.9 0.39 8.5E-06 39.3 5.3 55 42-105 237-293 (466)
271 PRK06062 hypothetical protein; 91.8 0.46 9.9E-06 38.7 5.6 55 42-105 231-286 (451)
272 KOG0053|consensus 91.5 0.47 1E-05 38.8 5.4 61 30-105 162-226 (409)
273 PRK06105 aminotransferase; Pro 91.4 0.49 1.1E-05 38.6 5.4 59 38-105 230-290 (460)
274 PRK06938 diaminobutyrate--2-ox 91.3 0.6 1.3E-05 38.2 5.9 56 41-105 247-303 (464)
275 PRK07483 hypothetical protein; 91.3 0.45 9.9E-06 38.7 5.1 56 41-105 216-272 (443)
276 PRK12389 glutamate-1-semialdeh 91.3 0.54 1.2E-05 37.9 5.5 56 41-105 216-271 (428)
277 PRK12403 putative aminotransfe 91.3 0.54 1.2E-05 38.4 5.5 60 37-105 233-294 (460)
278 PRK06149 hypothetical protein; 91.1 0.4 8.7E-06 42.7 5.0 60 38-105 757-817 (972)
279 TIGR01977 am_tr_V_EF2568 cyste 91.1 0.4 8.7E-06 36.9 4.5 38 29-70 136-177 (376)
280 PRK08134 O-acetylhomoserine am 91.0 0.87 1.9E-05 37.0 6.5 63 29-106 148-214 (433)
281 PRK07482 hypothetical protein; 91.0 0.58 1.3E-05 38.2 5.5 59 38-105 232-292 (461)
282 COG0160 GabT 4-aminobutyrate a 90.8 0.62 1.3E-05 38.5 5.5 62 37-106 233-295 (447)
283 PRK05965 hypothetical protein; 90.8 0.63 1.4E-05 38.0 5.5 60 37-105 226-287 (459)
284 PRK06931 diaminobutyrate--2-ox 90.8 0.68 1.5E-05 37.8 5.7 56 41-105 241-297 (459)
285 PRK11706 TDP-4-oxo-6-deoxy-D-g 90.7 0.52 1.1E-05 37.0 4.8 40 30-73 119-159 (375)
286 PRK06943 adenosylmethionine--8 90.5 0.63 1.4E-05 38.0 5.3 55 42-105 239-294 (453)
287 TIGR03812 tyr_de_CO2_Arch tyro 90.4 0.21 4.5E-06 38.5 2.3 33 37-73 164-196 (373)
288 PRK13580 serine hydroxymethylt 90.3 0.39 8.5E-06 40.1 3.9 74 29-108 218-293 (493)
289 PRK09221 beta alanine--pyruvat 90.3 0.7 1.5E-05 37.6 5.3 58 39-105 231-290 (445)
290 PRK06917 hypothetical protein; 90.2 0.59 1.3E-05 38.0 4.8 55 42-105 217-272 (447)
291 COG2873 MET17 O-acetylhomoseri 90.1 0.65 1.4E-05 37.9 4.9 67 27-108 144-214 (426)
292 COG4992 ArgD Ornithine/acetylo 89.6 1.6 3.4E-05 35.7 6.8 68 30-105 184-256 (404)
293 PRK06916 adenosylmethionine--8 89.2 1 2.2E-05 36.8 5.5 55 42-105 241-296 (460)
294 TIGR00699 GABAtrns_euk 4-amino 89.0 1.3 2.9E-05 36.5 6.1 62 37-105 262-325 (464)
295 PF01276 OKR_DC_1: Orn/Lys/Arg 88.7 0.13 2.8E-06 42.1 -0.0 83 20-106 155-244 (417)
296 cd00616 AHBA_syn 3-amino-5-hyd 88.7 0.94 2E-05 34.4 4.7 38 29-70 105-143 (352)
297 PRK08742 adenosylmethionine--8 88.4 1.1 2.5E-05 36.8 5.3 55 42-105 254-309 (472)
298 PRK07481 hypothetical protein; 88.0 1.3 2.8E-05 36.1 5.3 34 39-73 226-260 (449)
299 TIGR02379 ECA_wecE TDP-4-keto- 87.4 1.6 3.5E-05 34.6 5.5 39 30-72 119-158 (376)
300 PRK08114 cystathionine beta-ly 87.3 1.7 3.6E-05 35.2 5.6 68 29-107 146-215 (395)
301 PRK07030 adenosylmethionine--8 87.2 1.4 3E-05 36.2 5.1 55 42-105 232-287 (466)
302 PRK05613 O-acetylhomoserine am 87.0 1.9 4.1E-05 35.2 5.8 62 30-106 155-220 (437)
303 PRK15029 arginine decarboxylas 86.8 0.84 1.8E-05 40.0 3.8 69 33-105 315-389 (755)
304 COG4100 Cystathionine beta-lya 86.5 0.71 1.5E-05 37.0 2.9 67 29-105 164-236 (416)
305 PRK04366 glycine dehydrogenase 86.3 1.2 2.6E-05 36.5 4.4 38 29-69 207-247 (481)
306 PF14488 DUF4434: Domain of un 86.3 4.5 9.8E-05 28.8 6.8 60 41-101 15-88 (166)
307 PLN02651 cysteine desulfurase 86.0 1.2 2.6E-05 34.6 4.0 38 29-70 137-178 (364)
308 TIGR00474 selA seryl-tRNA(sec) 85.9 1.7 3.6E-05 35.8 5.0 56 45-105 231-291 (454)
309 COG0520 csdA Selenocysteine ly 84.7 1.7 3.8E-05 35.1 4.5 69 26-108 158-231 (405)
310 PRK04311 selenocysteine syntha 84.5 2.5 5.4E-05 34.9 5.4 55 45-105 236-296 (464)
311 PLN02974 adenosylmethionine-8- 84.3 2.3 5.1E-05 37.6 5.4 34 39-73 598-632 (817)
312 TIGR03588 PseC UDP-4-keto-6-de 83.4 1.5 3.2E-05 34.3 3.5 38 30-71 121-159 (380)
313 PRK13034 serine hydroxymethylt 83.2 3.5 7.6E-05 33.1 5.6 64 30-104 168-233 (416)
314 PRK13237 tyrosine phenol-lyase 83.1 3.4 7.3E-05 34.4 5.6 68 37-107 188-265 (460)
315 PRK15407 lipopolysaccharide bi 82.0 2.6 5.7E-05 34.2 4.6 38 29-70 158-196 (438)
316 TIGR00519 asnASE_I L-asparagin 81.7 2.8 6E-05 33.1 4.4 57 37-100 53-113 (336)
317 smart00870 Asparaginase Aspara 81.3 4.4 9.6E-05 31.7 5.4 58 37-99 51-113 (323)
318 COG2008 GLY1 Threonine aldolas 80.1 2.6 5.5E-05 33.8 3.8 68 32-107 132-205 (342)
319 cd00411 Asparaginase Asparagin 80.1 4 8.7E-05 32.0 4.8 56 37-99 54-113 (323)
320 PRK09461 ansA cytoplasmic aspa 79.8 5 0.00011 31.7 5.3 55 38-99 58-117 (335)
321 PLN03226 serine hydroxymethylt 79.5 4.9 0.00011 33.1 5.4 67 30-108 183-253 (475)
322 PF12757 DUF3812: Protein of u 78.6 1.4 3.1E-05 30.2 1.7 36 27-68 54-89 (126)
323 PRK11096 ansB L-asparaginase I 77.6 6 0.00013 31.6 5.2 56 37-99 76-135 (347)
324 TIGR01814 kynureninase kynuren 76.6 4 8.7E-05 32.2 4.0 62 29-104 170-235 (406)
325 PRK04183 glutamyl-tRNA(Gln) am 74.9 6.3 0.00014 32.3 4.7 57 37-99 127-187 (419)
326 TIGR02617 tnaA_trp_ase tryptop 73.4 9.8 0.00021 31.8 5.5 62 38-106 196-270 (467)
327 COG0252 AnsB L-asparaginase/ar 73.2 8.8 0.00019 30.8 5.1 58 37-100 74-136 (351)
328 TIGR00520 asnASE_II L-asparagi 72.6 8.5 0.00018 30.7 4.9 58 37-99 79-140 (349)
329 PF00710 Asparaginase: Asparag 72.6 3.2 6.9E-05 32.4 2.4 56 37-99 48-108 (313)
330 TIGR02153 gatD_arch glutamyl-t 72.2 9.4 0.0002 31.1 5.1 58 37-100 114-176 (404)
331 PF14258 DUF4350: Domain of un 71.8 14 0.0003 22.0 4.7 36 29-66 34-70 (70)
332 PF03102 NeuB: NeuB family; I 71.0 12 0.00026 28.4 5.1 59 41-101 51-123 (241)
333 PRK06148 hypothetical protein; 70.9 6.7 0.00015 35.4 4.4 59 39-105 798-857 (1013)
334 COG0161 BioA Adenosylmethionin 70.8 6.7 0.00014 32.6 4.0 37 37-74 226-263 (449)
335 PRK06434 cystathionine gamma-l 70.7 8.2 0.00018 31.0 4.4 59 31-106 149-211 (384)
336 COG2240 PdxK Pyridoxal/pyridox 70.1 13 0.00029 29.0 5.3 35 38-73 48-82 (281)
337 COG1889 NOP1 Fibrillarin-like 69.7 8.3 0.00018 29.2 4.0 36 41-76 106-157 (231)
338 PF00128 Alpha-amylase: Alpha 69.2 5.9 0.00013 29.0 3.1 32 44-76 50-81 (316)
339 PLN02590 probable tyrosine dec 69.0 3.2 7E-05 35.0 1.8 30 44-74 302-331 (539)
340 PF02229 PC4: Transcriptional 68.8 1.8 4E-05 25.5 0.3 17 39-55 40-56 (56)
341 PF08672 APC2: Anaphase promot 67.9 8.6 0.00019 23.1 3.1 32 37-69 27-58 (60)
342 PF01075 Glyco_transf_9: Glyco 67.6 12 0.00026 27.1 4.5 32 28-60 102-137 (247)
343 TIGR02618 tyr_phenol_ly tyrosi 67.5 7.8 0.00017 32.1 3.8 30 38-68 183-212 (450)
344 PRK07046 aminotransferase; Val 67.0 11 0.00023 30.9 4.4 31 39-70 232-262 (453)
345 cd02742 GH20_hexosaminidase Be 66.0 7.8 0.00017 29.9 3.3 29 38-67 64-94 (303)
346 PRK15400 lysine decarboxylase 64.9 12 0.00026 32.8 4.6 67 33-105 300-370 (714)
347 PF04019 DUF359: Protein of un 64.8 40 0.00087 23.0 6.3 41 37-88 41-81 (121)
348 cd06563 GH20_chitobiase-like T 64.5 8 0.00017 30.6 3.2 30 37-67 77-108 (357)
349 PLN02880 tyrosine decarboxylas 64.4 7.7 0.00017 32.1 3.2 29 45-74 255-283 (490)
350 PTZ00094 serine hydroxymethylt 63.9 12 0.00026 30.3 4.2 67 30-108 182-252 (452)
351 cd06568 GH20_SpHex_like A subg 63.3 10 0.00022 29.8 3.6 29 38-67 67-97 (329)
352 PF00728 Glyco_hydro_20: Glyco 62.2 7.2 0.00016 30.0 2.5 26 42-68 69-96 (351)
353 cd06565 GH20_GcnA-like Glycosy 61.6 10 0.00023 29.3 3.3 31 36-67 50-82 (301)
354 smart00642 Aamy Alpha-amylase 61.6 16 0.00034 25.9 4.0 30 44-74 68-97 (166)
355 PRK05177 minC septum formation 61.5 19 0.00042 27.1 4.6 32 32-64 50-81 (239)
356 cd06564 GH20_DspB_LnbB-like Gl 61.3 8.7 0.00019 29.9 2.9 30 38-68 74-105 (326)
357 COG1921 SelA Selenocysteine sy 60.9 14 0.0003 30.3 3.9 54 42-105 173-226 (395)
358 KOG1401|consensus 60.4 26 0.00056 29.0 5.4 50 39-93 220-269 (433)
359 KOG0628|consensus 60.2 6.1 0.00013 33.2 1.9 32 44-76 250-281 (511)
360 COG0076 GadB Glutamate decarbo 59.8 13 0.00027 30.8 3.7 38 37-75 214-252 (460)
361 KOG2712|consensus 59.1 10 0.00022 25.6 2.4 19 37-55 77-95 (108)
362 PF00266 Aminotran_5: Aminotra 58.5 39 0.00085 26.1 6.1 65 29-107 138-206 (371)
363 cd06595 GH31_xylosidase_XylS-l 58.4 34 0.00073 26.2 5.6 54 43-97 22-93 (292)
364 KOG1405|consensus 58.3 27 0.0006 28.8 5.2 61 41-108 287-348 (484)
365 COG0075 Serine-pyruvate aminot 57.6 22 0.00047 28.9 4.6 61 20-85 121-185 (383)
366 COG0336 TrmD tRNA-(guanine-N1) 57.5 24 0.00052 27.0 4.5 53 15-72 64-116 (240)
367 PLN02397 aspartate transaminas 57.5 14 0.0003 29.6 3.5 37 4-40 21-57 (423)
368 COG0296 GlgB 1,4-alpha-glucan 57.4 17 0.00036 31.5 4.0 38 37-75 205-242 (628)
369 PF01269 Fibrillarin: Fibrilla 56.8 17 0.00037 27.6 3.6 32 37-68 96-131 (229)
370 COG2240 PdxK Pyridoxal/pyridox 56.7 19 0.00041 28.2 3.9 55 14-68 54-112 (281)
371 cd06570 GH20_chitobiase-like_1 54.7 25 0.00055 27.5 4.4 29 39-68 61-91 (311)
372 cd03230 ABC_DR_subfamily_A Thi 54.3 50 0.0011 22.8 5.5 29 46-75 101-129 (173)
373 PRK05481 lipoyl synthase; Prov 54.3 67 0.0015 24.7 6.7 58 42-102 176-235 (289)
374 KOG3843|consensus 54.2 3.4 7.3E-05 32.9 -0.5 55 43-105 171-228 (432)
375 cd01169 HMPP_kinase 4-amino-5- 53.6 28 0.00061 25.1 4.3 47 21-70 59-105 (242)
376 cd06562 GH20_HexA_HexB-like Be 53.5 16 0.00035 28.8 3.2 28 40-68 64-93 (348)
377 KOG0629|consensus 53.4 14 0.00031 30.9 2.9 51 20-71 243-294 (510)
378 COG3345 GalA Alpha-galactosida 53.3 18 0.00039 31.3 3.5 32 39-71 302-334 (687)
379 PRK04804 minC septum formation 52.4 34 0.00073 25.4 4.6 32 32-64 46-77 (221)
380 TIGR00334 5S_RNA_mat_M5 ribonu 52.0 26 0.00055 25.6 3.8 34 37-71 27-60 (174)
381 TIGR02673 FtsE cell division A 51.6 50 0.0011 23.4 5.3 32 43-75 140-171 (214)
382 PRK07276 DNA polymerase III su 51.5 40 0.00086 26.3 5.0 46 23-68 64-113 (290)
383 PF11116 DUF2624: Protein of u 51.1 11 0.00023 24.5 1.5 28 40-69 28-55 (85)
384 cd06569 GH20_Sm-chitobiase-lik 50.6 20 0.00044 29.4 3.4 30 38-68 89-120 (445)
385 cd03262 ABC_HisP_GlnQ_permease 50.3 48 0.0011 23.4 5.1 33 42-75 137-169 (213)
386 PRK07940 DNA polymerase III su 50.2 44 0.00096 27.0 5.3 46 25-70 79-128 (394)
387 PF11054 Surface_antigen: Spor 50.1 17 0.00036 28.0 2.7 21 37-57 212-232 (254)
388 PRK13992 minC septum formation 49.7 33 0.00071 25.3 4.1 30 33-63 44-73 (205)
389 PRK00513 minC septum formation 49.6 34 0.00073 25.3 4.2 32 32-64 50-81 (214)
390 PF08357 SEFIR: SEFIR domain; 49.3 78 0.0017 21.2 6.1 65 32-99 1-67 (150)
391 PLN02263 serine decarboxylase 49.1 25 0.00054 29.3 3.7 29 45-74 244-277 (470)
392 cd03214 ABC_Iron-Siderophores_ 48.7 82 0.0018 21.8 6.0 31 44-75 101-131 (180)
393 COG1137 YhbG ABC-type (unclass 48.7 58 0.0013 24.9 5.3 48 49-97 148-195 (243)
394 COG2894 MinD Septum formation 48.5 50 0.0011 25.6 5.0 48 20-68 69-122 (272)
395 COG1909 Uncharacterized protei 48.3 69 0.0015 23.2 5.5 51 37-98 86-136 (167)
396 PF00282 Pyridoxal_deC: Pyrido 48.0 19 0.00041 28.7 2.8 27 44-71 209-235 (373)
397 cd03226 ABC_cobalt_CbiO_domain 48.0 61 0.0013 22.9 5.3 37 38-75 124-160 (205)
398 PRK13539 cytochrome c biogenes 47.5 68 0.0015 22.8 5.5 31 44-75 131-161 (207)
399 PRK10619 histidine/lysine/argi 47.3 57 0.0012 24.0 5.2 31 44-75 156-186 (257)
400 PLN02757 sirohydrochlorine fer 46.3 61 0.0013 22.7 4.9 57 37-97 20-77 (154)
401 TIGR02402 trehalose_TreZ malto 45.9 33 0.00072 28.8 4.1 32 42-74 156-187 (542)
402 KOG1359|consensus 45.5 28 0.00061 28.1 3.4 62 41-105 205-266 (417)
403 cd03216 ABC_Carb_Monos_I This 45.3 74 0.0016 21.8 5.3 28 47-75 89-116 (163)
404 COG0859 RfaF ADP-heptose:LPS h 45.2 48 0.001 25.7 4.7 34 31-65 175-213 (334)
405 PRK10419 nikE nickel transport 45.1 85 0.0018 23.4 5.9 38 37-75 148-185 (268)
406 TIGR01166 cbiO cobalt transpor 44.9 67 0.0014 22.4 5.0 29 46-75 133-161 (190)
407 COG0616 SppA Periplasmic serin 44.5 33 0.00072 26.8 3.7 50 16-65 83-135 (317)
408 PF08538 DUF1749: Protein of u 44.3 37 0.00081 26.8 3.9 55 33-88 36-94 (303)
409 cd03231 ABC_CcmA_heme_exporter 44.0 85 0.0018 22.2 5.5 30 45-75 130-159 (201)
410 cd03246 ABCC_Protease_Secretio 43.7 96 0.0021 21.3 5.7 28 47-75 103-130 (173)
411 PF03662 Glyco_hydro_79n: Glyc 43.5 47 0.001 26.4 4.4 66 39-108 102-168 (319)
412 PRK09257 aromatic amino acid a 43.4 36 0.00078 26.7 3.8 34 7-40 2-35 (396)
413 PTZ00376 aspartate aminotransf 43.4 28 0.00062 27.4 3.2 36 5-40 3-38 (404)
414 TIGR02324 CP_lyasePhnL phospho 43.3 73 0.0016 22.8 5.1 34 41-75 150-183 (224)
415 cd03300 ABC_PotA_N PotA is an 43.2 90 0.0019 22.6 5.6 30 45-75 135-164 (232)
416 cd03229 ABC_Class3 This class 43.2 99 0.0022 21.4 5.7 32 43-75 101-134 (178)
417 PF05889 SLA_LP_auto_ag: Solub 43.1 59 0.0013 26.6 4.9 61 37-104 162-225 (389)
418 PRK06871 DNA polymerase III su 43.0 74 0.0016 25.1 5.4 46 23-68 66-116 (325)
419 cd03213 ABCG_EPDR ABCG transpo 42.8 94 0.002 21.9 5.6 29 46-75 117-145 (194)
420 PRK14465 ribosomal RNA large s 42.7 91 0.002 24.9 5.9 83 16-100 239-327 (342)
421 TIGR02530 flg_new flagellar op 42.6 52 0.0011 21.7 3.8 21 37-57 26-46 (96)
422 KOG1402|consensus 42.5 34 0.00074 28.0 3.4 51 23-74 200-255 (427)
423 cd03235 ABC_Metallic_Cations A 42.3 80 0.0017 22.4 5.2 31 44-75 136-166 (213)
424 TIGR03771 anch_rpt_ABC anchore 42.2 73 0.0016 23.0 5.0 34 41-75 114-147 (223)
425 PRK09057 coproporphyrinogen II 42.1 92 0.002 24.7 5.9 67 30-101 55-126 (380)
426 PRK12313 glycogen branching en 42.0 41 0.00089 28.7 4.1 31 44-75 218-248 (633)
427 KOG1368|consensus 42.0 35 0.00075 27.6 3.4 38 30-68 154-196 (384)
428 cd03232 ABC_PDR_domain2 The pl 42.0 82 0.0018 22.1 5.2 33 42-75 108-142 (192)
429 COG0001 HemL Glutamate-1-semia 42.0 46 0.00099 27.6 4.2 37 37-74 212-248 (432)
430 TIGR00678 holB DNA polymerase 41.9 77 0.0017 22.1 5.0 40 29-68 62-105 (188)
431 COG4674 Uncharacterized ABC-ty 41.9 28 0.00061 26.6 2.7 46 42-88 149-194 (249)
432 PRK02769 histidine decarboxyla 41.8 54 0.0012 26.2 4.6 34 37-74 171-207 (380)
433 PRK09580 sufC cysteine desulfu 41.7 85 0.0018 22.8 5.3 31 44-75 149-179 (248)
434 PRK13540 cytochrome c biogenes 41.6 94 0.002 21.9 5.4 30 45-75 132-161 (200)
435 PRK10908 cell division protein 41.6 97 0.0021 22.1 5.6 31 44-75 141-171 (222)
436 cd03215 ABC_Carb_Monos_II This 41.3 99 0.0021 21.5 5.4 32 43-75 105-138 (182)
437 TIGR01189 ccmA heme ABC export 41.3 1E+02 0.0022 21.6 5.5 30 45-75 132-161 (198)
438 PLN03244 alpha-amylase; Provis 41.3 41 0.0009 30.3 4.0 38 37-75 432-469 (872)
439 cd03266 ABC_NatA_sodium_export 41.2 92 0.002 22.1 5.4 30 45-75 141-170 (218)
440 PTZ00344 pyridoxal kinase; Pro 41.2 53 0.0011 25.0 4.3 48 20-67 64-115 (296)
441 PF09673 TrbC_Ftype: Type-F co 40.9 1.1E+02 0.0023 20.3 6.1 42 42-88 7-48 (113)
442 PF13177 DNA_pol3_delta2: DNA 40.9 59 0.0013 22.6 4.2 46 24-69 61-112 (162)
443 cd03238 ABC_UvrA The excision 40.4 91 0.002 22.1 5.2 30 45-75 92-123 (176)
444 PF00694 Aconitase_C: Aconitas 40.3 31 0.00067 23.9 2.6 31 71-104 83-114 (131)
445 cd03286 ABC_MSH6_euk MutS6 hom 40.3 1.4E+02 0.003 22.0 6.3 45 46-90 95-141 (218)
446 cd01020 TroA_b Metal binding p 40.2 52 0.0011 24.7 4.0 33 37-70 184-216 (264)
447 TIGR00960 3a0501s02 Type II (G 39.7 1E+02 0.0022 21.9 5.4 37 38-75 136-172 (216)
448 PF08543 Phos_pyr_kin: Phospho 39.7 44 0.00095 24.8 3.5 57 10-70 40-96 (246)
449 TIGR03799 NOD_PanD_pyr putativ 39.4 27 0.00059 29.3 2.6 28 45-73 281-308 (522)
450 cd03292 ABC_FtsE_transporter F 39.4 1.2E+02 0.0026 21.3 5.7 37 38-75 134-170 (214)
451 PHA00684 hypothetical protein 39.4 85 0.0018 21.8 4.6 50 48-100 62-111 (128)
452 cd03299 ABC_ModC_like Archeal 39.0 1.2E+02 0.0025 22.1 5.7 31 44-75 133-163 (235)
453 cd01018 ZntC Metal binding pro 39.0 1.5E+02 0.0032 22.2 6.3 56 38-103 196-252 (266)
454 PF03460 NIR_SIR_ferr: Nitrite 38.8 15 0.00032 21.7 0.7 26 33-58 11-36 (69)
455 TIGR01184 ntrCD nitrate transp 38.8 1.2E+02 0.0026 21.9 5.7 32 43-75 117-148 (230)
456 PRK13642 cbiO cobalt transport 38.7 96 0.0021 23.2 5.3 36 39-75 139-174 (277)
457 PLN03032 serine decarboxylase; 38.7 45 0.00098 26.7 3.7 33 37-73 172-209 (374)
458 PRK11264 putative amino-acid A 38.6 1.1E+02 0.0024 22.3 5.5 30 45-75 149-178 (250)
459 PRK00207 sulfur transfer compl 38.5 1.2E+02 0.0025 20.5 5.3 47 61-107 37-88 (128)
460 COG3358 Uncharacterized conser 38.4 17 0.00036 27.8 1.1 36 6-41 120-156 (262)
461 cd03256 ABC_PhnC_transporter A 38.3 1.1E+02 0.0024 22.0 5.4 30 45-75 149-178 (241)
462 cd03257 ABC_NikE_OppD_transpor 38.3 1.2E+02 0.0026 21.5 5.6 33 42-75 145-179 (228)
463 cd06598 GH31_transferase_CtsZ 38.1 1.1E+02 0.0025 23.6 5.7 53 44-97 22-89 (317)
464 TIGR03527 selenium_YedF seleni 37.9 27 0.00059 25.6 2.1 63 43-108 102-168 (194)
465 cd03301 ABC_MalK_N The N-termi 37.8 1.2E+02 0.0027 21.3 5.6 37 38-75 128-164 (213)
466 cd03259 ABC_Carb_Solutes_like 37.7 1.2E+02 0.0026 21.4 5.5 30 45-75 135-164 (213)
467 TIGR02211 LolD_lipo_ex lipopro 37.6 1.4E+02 0.0031 21.1 5.9 31 44-75 145-175 (221)
468 PF05209 MinC_N: Septum format 37.5 11 0.00024 24.3 0.0 29 34-64 48-76 (99)
469 PRK11614 livF leucine/isoleuci 37.4 1E+02 0.0023 22.2 5.2 26 49-75 146-171 (237)
470 PRK13650 cbiO cobalt transport 37.3 1.1E+02 0.0024 23.0 5.5 38 37-75 137-174 (279)
471 PRK00366 ispG 4-hydroxy-3-meth 37.0 52 0.0011 26.7 3.7 55 19-79 89-144 (360)
472 cd06592 GH31_glucosidase_KIAA1 36.9 1.5E+02 0.0033 22.7 6.3 56 39-96 23-88 (303)
473 TIGR03608 L_ocin_972_ABC putat 36.9 1.1E+02 0.0024 21.4 5.2 33 42-75 134-168 (206)
474 PLN02978 pyridoxal kinase 36.7 81 0.0018 24.3 4.7 32 38-69 91-126 (308)
475 PRK10895 lipopolysaccharide AB 36.6 1.3E+02 0.0027 21.8 5.6 30 45-75 142-171 (241)
476 PRK10982 galactose/methyl gala 36.6 1.3E+02 0.0029 24.4 6.2 41 35-76 386-426 (491)
477 PRK09441 cytoplasmic alpha-amy 36.5 61 0.0013 26.5 4.2 31 44-75 79-109 (479)
478 PRK09493 glnQ glutamine ABC tr 36.3 1.1E+02 0.0024 22.1 5.2 28 47-75 143-170 (240)
479 PRK13538 cytochrome c biogenes 36.1 1.3E+02 0.0028 21.2 5.4 31 44-75 133-163 (204)
480 TIGR02982 heterocyst_DevA ABC 36.0 1.5E+02 0.0032 21.2 5.8 31 44-75 145-175 (220)
481 PRK07993 DNA polymerase III su 35.8 1E+02 0.0022 24.3 5.2 46 23-68 66-117 (334)
482 TIGR00968 3a0106s01 sulfate AB 35.5 1.1E+02 0.0024 22.2 5.1 36 39-75 129-164 (237)
483 PRK05402 glycogen branching en 35.5 60 0.0013 28.3 4.1 31 44-75 313-343 (726)
484 PRK06427 bifunctional hydroxy- 35.5 69 0.0015 23.6 4.1 46 20-69 63-109 (266)
485 KOG0339|consensus 35.4 96 0.0021 27.0 5.1 60 41-103 350-414 (731)
486 TIGR02195 heptsyl_trn_II lipop 35.4 1.4E+02 0.0029 22.7 5.8 30 31-61 174-208 (334)
487 cd03293 ABC_NrtD_SsuB_transpor 35.2 1.3E+02 0.0029 21.3 5.5 34 41-75 132-165 (220)
488 TIGR01515 branching_enzym alph 35.2 61 0.0013 27.7 4.1 31 44-75 204-234 (613)
489 cd03218 ABC_YhbG The ABC trans 35.1 1.4E+02 0.003 21.3 5.6 29 46-75 139-167 (232)
490 cd03267 ABC_NatA_like Similar 35.0 1.4E+02 0.003 21.7 5.6 31 44-75 157-187 (236)
491 TIGR03864 PQQ_ABC_ATP ABC tran 34.9 1.3E+02 0.0028 21.7 5.4 33 42-75 132-166 (236)
492 PRK06090 DNA polymerase III su 34.9 1.1E+02 0.0024 24.1 5.3 46 23-68 66-117 (319)
493 cd03261 ABC_Org_Solvent_Resist 34.8 1.3E+02 0.0028 21.6 5.4 30 45-75 141-170 (235)
494 TIGR02193 heptsyl_trn_I lipopo 34.7 1E+02 0.0023 23.2 5.0 30 31-61 179-212 (319)
495 PRK05707 DNA polymerase III su 34.7 1.1E+02 0.0024 24.0 5.2 44 25-68 66-115 (328)
496 TIGR03005 ectoine_ehuA ectoine 34.6 1.6E+02 0.0035 21.4 5.9 30 45-75 151-180 (252)
497 cd03225 ABC_cobalt_CbiO_domain 34.6 1.3E+02 0.0028 21.2 5.2 30 45-75 139-168 (211)
498 TIGR01846 type_I_sec_HlyB type 34.4 1.3E+02 0.0028 25.7 5.9 39 36-75 587-627 (694)
499 cd03415 CbiX_CbiC Archaeal sir 34.4 1.5E+02 0.0032 20.1 5.6 43 45-92 16-58 (125)
500 TIGR03811 tyr_de_CO2_Ent tyros 34.3 92 0.002 26.9 5.0 29 44-73 296-326 (608)
No 1
>KOG1411|consensus
Probab=99.97 E-value=4.5e-32 Score=212.31 Aligned_cols=72 Identities=56% Similarity=1.007 Sum_probs=70.4
Q ss_pred ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhhccCCC
Q psy207 37 SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNFGLYSR 109 (109)
Q Consensus 37 ~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~fglyg~ 109 (109)
||||.|+|.|||++|.++++++ +++|++|+|||||++|++++|++++|+|++.+.++++||||+|||||||.
T Consensus 209 NPTGvDPt~eqw~ki~~~~~~k-~~~pffDmAYQGfaSG~~d~DA~avR~F~~~g~~~~laQSyAKNMGLYgE 280 (427)
T KOG1411|consen 209 NPTGVDPTKEQWEKISDLIKEK-NLLPFFDMAYQGFASGDLDKDAQAVRLFVEDGHEILLAQSYAKNMGLYGE 280 (427)
T ss_pred CCCCCCccHHHHHHHHHHhhhc-cccchhhhhhcccccCCchhhHHHHHHHHHcCCceEeehhhhhhcchhhh
Confidence 6899999999999999999999 99999999999999999999999999999999999999999999999995
No 2
>KOG1412|consensus
Probab=99.96 E-value=2.4e-29 Score=195.36 Aligned_cols=88 Identities=52% Similarity=0.933 Sum_probs=77.4
Q ss_pred hhhhhcCCCCCCeeee-----ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEE
Q psy207 21 VNKAYLDDPHPKKVNL-----SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFL 95 (109)
Q Consensus 21 l~~~~~~d~~~~kv~L-----~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~ 95 (109)
+.......+....+.| ||||+|+|+|||++|++++++| +++++||.|||||++||+++|+|++|+|++.+.+++
T Consensus 168 ~Lsdl~~APe~si~iLhaCAhNPTGmDPT~EQW~qia~vik~k-~lf~fFDiAYQGfASGD~~~DawAiR~fV~~g~e~f 246 (410)
T KOG1412|consen 168 FLSDLESAPEGSIIILHACAHNPTGMDPTREQWKQIADVIKSK-NLFPFFDIAYQGFASGDLDADAWAIRYFVEQGFELF 246 (410)
T ss_pred HHHHHhhCCCCcEEeeeccccCCCCCCCCHHHHHHHHHHHHhc-CceeeeehhhcccccCCccccHHHHHHHHhcCCeEE
Confidence 3344343344444444 9999999999999999999999 999999999999999999999999999999999999
Q ss_pred EEechhhhhccCCC
Q psy207 96 CSQSFAKNFGLYSR 109 (109)
Q Consensus 96 v~~SfSK~fglyg~ 109 (109)
|||||+|||||||.
T Consensus 247 v~QSFaKNfGlYne 260 (410)
T KOG1412|consen 247 VCQSFAKNFGLYNE 260 (410)
T ss_pred EEhhhhhhcccccc
Confidence 99999999999984
No 3
>COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=99.94 E-value=4.5e-27 Score=185.63 Aligned_cols=86 Identities=53% Similarity=0.866 Sum_probs=77.2
Q ss_pred hhhhcCCCCCCeeee-----ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEE
Q psy207 22 NKAYLDDPHPKKVNL-----SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLC 96 (109)
Q Consensus 22 ~~~~~~d~~~~kv~L-----~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v 96 (109)
.+..+.-+....|.| ||||.|+|.|||++|+++++++ +++|++|+|||||++| +++|++++|.|++.+.+++|
T Consensus 163 la~L~~a~~~~vvLLH~CcHNPTG~D~t~~qW~~l~~~~~~r-~lip~~D~AYQGF~~G-leeDa~~lR~~a~~~~~~lv 240 (396)
T COG1448 163 LADLKTAPEGSVVLLHGCCHNPTGIDPTEEQWQELADLIKER-GLIPFFDIAYQGFADG-LEEDAYALRLFAEVGPELLV 240 (396)
T ss_pred HHHHHhCCCCCEEEEecCCCCCCCCCCCHHHHHHHHHHHHHc-CCeeeeehhhhhhccc-hHHHHHHHHHHHHhCCcEEE
Confidence 344444444455555 9999999999999999999999 9999999999999999 99999999999999999999
Q ss_pred EechhhhhccCCC
Q psy207 97 SQSFAKNFGLYSR 109 (109)
Q Consensus 97 ~~SfSK~fglyg~ 109 (109)
|+||||||||||+
T Consensus 241 a~S~SKnfgLYgE 253 (396)
T COG1448 241 ASSFSKNFGLYGE 253 (396)
T ss_pred Eehhhhhhhhhhh
Confidence 9999999999995
No 4
>PLN02397 aspartate transaminase
Probab=99.59 E-value=5.5e-15 Score=117.93 Aligned_cols=72 Identities=54% Similarity=0.964 Sum_probs=60.3
Q ss_pred ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhhccCCC
Q psy207 37 SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNFGLYSR 109 (109)
Q Consensus 37 ~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~fglyg~ 109 (109)
||||..+++|+|++|+++++++ ++++|.||+|.+|.+++..++...+..+...+.++++++||||+|||+|+
T Consensus 205 NPTG~v~s~e~l~~i~~~a~~~-~~~vI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vI~~~SfSK~~~~~G~ 276 (423)
T PLN02397 205 NPTGVDPTPEQWEQISDLIKSK-NHLPFFDSAYQGFASGDLDADAQSVRMFVEDGHEILVAQSYAKNMGLYGE 276 (423)
T ss_pred CCCCCCCCHHHHHHHHHHHHhC-CcEEEEecccCCccCCchhhhhHHHHHHHhcCCcEEEEEECcccCCCccc
Confidence 9999999999999999999999 99999999999999864222333444454445679999999999999985
No 5
>PTZ00376 aspartate aminotransferase; Provisional
Probab=99.58 E-value=1.1e-14 Score=115.00 Aligned_cols=77 Identities=57% Similarity=1.022 Sum_probs=63.8
Q ss_pred Ceeee-----ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhhcc
Q psy207 32 KKVNL-----SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNFGL 106 (109)
Q Consensus 32 ~kv~L-----~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~fgl 106 (109)
+++.+ ||||..+++++|++|+++++++ ++++|.|++|.+|.+++.+.+...+..+.+...++++++||||+|||
T Consensus 177 ~~~~~~~~p~NPTG~~~s~~~~~~l~~~a~~~-~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~~ 255 (404)
T PTZ00376 177 SVVLLHACAHNPTGVDPTEEQWKEIADVMKRK-NLIPFFDMAYQGFASGDLDKDAYAIRLFAERGVEFLVAQSFSKNMGL 255 (404)
T ss_pred CEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhC-CcEEEEehhhcCccCCCHHHHHHHHHHHHhcCCcEEEEEeCCCcccc
Confidence 45555 9999999999999999999999 99999999999999864333334455454455689999999999999
Q ss_pred CCC
Q psy207 107 YSR 109 (109)
Q Consensus 107 yg~ 109 (109)
+|+
T Consensus 256 ~Gl 258 (404)
T PTZ00376 256 YGE 258 (404)
T ss_pred ccc
Confidence 985
No 6
>PRK09257 aromatic amino acid aminotransferase; Provisional
Probab=99.55 E-value=2.6e-14 Score=112.42 Aligned_cols=76 Identities=53% Similarity=0.907 Sum_probs=63.2
Q ss_pred Ceeee-----ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhhcc
Q psy207 32 KKVNL-----SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNFGL 106 (109)
Q Consensus 32 ~kv~L-----~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~fgl 106 (109)
+++.+ ||||..+++++|++|+++++++ ++++|.|++|.+|.++ .+++...+..+.....++++++||||+||+
T Consensus 173 ~~~~i~~~p~NPTG~~~s~~~~~~l~~~a~~~-~~~ii~De~Y~~l~~~-~~~~~~~~~~~~~~~~~vi~i~SfSK~~~~ 250 (396)
T PRK09257 173 DVVLLHGCCHNPTGADLTPEQWDELAELLKER-GLIPFLDIAYQGFGDG-LEEDAYGLRAFAAAGLELLVASSFSKNFGL 250 (396)
T ss_pred CEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhC-CcEEEEeccccccccc-hHHHHHHHHHHHhcCCcEEEEEEcCCcCcc
Confidence 45555 9999999999999999999999 9999999999999864 223444555555556789999999999999
Q ss_pred CCC
Q psy207 107 YSR 109 (109)
Q Consensus 107 yg~ 109 (109)
+|+
T Consensus 251 ~Gl 253 (396)
T PRK09257 251 YGE 253 (396)
T ss_pred ccc
Confidence 885
No 7
>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=99.50 E-value=3e-14 Score=113.57 Aligned_cols=77 Identities=17% Similarity=0.292 Sum_probs=62.1
Q ss_pred CCCeeee----ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhhc
Q psy207 30 HPKKVNL----SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNFG 105 (109)
Q Consensus 30 ~~~kv~L----~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~fg 105 (109)
.+|.+.| ||||..++++++++|++++++| ++++|.||+|.+|.+++. ....+..+.....++++.+||||+|+
T Consensus 163 ktk~i~ln~P~NPTGav~~~~~l~~i~~~a~~~-~i~ii~DEiY~~l~yd~~--~~~s~~~~~~~~~~~i~i~s~SK~~~ 239 (393)
T COG0436 163 KTKAIILNSPNNPTGAVYSKEELKAIVELAREH-DIIIISDEIYEELVYDGA--EHPSILELAGARDRTITINSFSKTYG 239 (393)
T ss_pred cceEEEEeCCCCCcCcCCCHHHHHHHHHHHHHc-CeEEEEehhhhhcccCCC--CcCCHhhcCCCcceEEEEeccccccc
Confidence 5666666 9999999999999999999999 999999999999999852 01112112222468999999999999
Q ss_pred cCCC
Q psy207 106 LYSR 109 (109)
Q Consensus 106 lyg~ 109 (109)
|+|.
T Consensus 240 mtGw 243 (393)
T COG0436 240 MTGW 243 (393)
T ss_pred cccc
Confidence 9994
No 8
>PRK06425 histidinol-phosphate aminotransferase; Validated
Probab=99.44 E-value=2.8e-13 Score=104.46 Aligned_cols=76 Identities=13% Similarity=0.188 Sum_probs=61.4
Q ss_pred CCCCeeee----ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhh
Q psy207 29 PHPKKVNL----SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNF 104 (109)
Q Consensus 29 ~~~~kv~L----~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~f 104 (109)
..++.|.+ ||||..++.+++++|++.++++ +.++|.||+|.+|..+.. . ....+.+...++++++||||+|
T Consensus 121 ~~~k~v~l~nP~NPTG~~~s~~~~~~l~~~a~~~-~~~iI~DE~Y~~~~~~~~-~---~~~~~~~~~~~vi~~~SfSK~~ 195 (332)
T PRK06425 121 YNFDLIFIVSPDNPLGNLISRDSLLTISEICRKK-GALLFIDEAFIDFVPNRA-E---EDVLLNRSYGNVIIGRSLTKIL 195 (332)
T ss_pred cCCCEEEEeCCCCCcCCccCHHHHHHHHHHHHHc-CCEEEEecchhccccccc-h---hHHHHhccCCCEEEEeecHHhc
Confidence 35666776 9999999999999999999999 999999999999986421 1 1222333457899999999999
Q ss_pred ccCCC
Q psy207 105 GLYSR 109 (109)
Q Consensus 105 glyg~ 109 (109)
||.|.
T Consensus 196 ~l~Gl 200 (332)
T PRK06425 196 GIPSL 200 (332)
T ss_pred CCchh
Confidence 99984
No 9
>TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh).
Probab=99.43 E-value=1.6e-13 Score=108.18 Aligned_cols=77 Identities=22% Similarity=0.252 Sum_probs=59.7
Q ss_pred CCCeeee----ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhhc
Q psy207 30 HPKKVNL----SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNFG 105 (109)
Q Consensus 30 ~~~kv~L----~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~fg 105 (109)
.++.|.| ||||..++.++|++|+++++++ ++++|.|++|.+|.+++.. ...+..+.+...++++++||||.||
T Consensus 173 ~~~~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~-~~~iI~De~y~~~~~~~~~--~~~~~~~~~~~~~vi~~~SfSK~~g 249 (402)
T TIGR03542 173 KIDIIYLCSPNNPTGTVLTKEQLKELVDYANEH-GSLILFDAAYSAFISDPSL--PHSIFEIPGAKECAIEFRSFSKTAG 249 (402)
T ss_pred CceEEEEeCCCCCCCccCCHHHHHHHHHHHHHc-CeEEEEEchhhhhccCCCC--CcchhhCCCCcccEEEEecCccccC
Confidence 3456666 9999999999999999999999 9999999999999875310 0122222222357899999999999
Q ss_pred cCCC
Q psy207 106 LYSR 109 (109)
Q Consensus 106 lyg~ 109 (109)
+.|+
T Consensus 250 ~pGl 253 (402)
T TIGR03542 250 FTGV 253 (402)
T ss_pred CCCc
Confidence 9985
No 10
>PRK07590 L,L-diaminopimelate aminotransferase; Validated
Probab=99.40 E-value=4.4e-13 Score=105.97 Aligned_cols=78 Identities=22% Similarity=0.253 Sum_probs=60.0
Q ss_pred CCCCeeee----ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhh
Q psy207 29 PHPKKVNL----SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNF 104 (109)
Q Consensus 29 ~~~~kv~L----~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~f 104 (109)
..++.|.| ||||..++.+++++|+++++++ ++++|.||+|.+|..+.- . ...+..+.....++++++||||+|
T Consensus 175 ~~~k~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~-~~~iI~De~Y~~~~~~~~-~-~~~~~~~~~~~~~vi~~~SfSK~~ 251 (409)
T PRK07590 175 EKVDIIYLCFPNNPTGTVLTKEQLKAWVDYAKEN-GSLILFDAAYEAFISDPS-L-PHSIYEIEGARECAIEFRSFSKTA 251 (409)
T ss_pred cCceEEEEeCCCCCcCCcCCHHHHHHHHHHHHHc-CeEEEEEccchhhccCCC-C-CcchhhCCCcccceEEEecCcccc
Confidence 34556666 9999999999999999999999 999999999999986531 0 112222222234689999999999
Q ss_pred ccCCC
Q psy207 105 GLYSR 109 (109)
Q Consensus 105 glyg~ 109 (109)
|+.|+
T Consensus 252 ~~pGl 256 (409)
T PRK07590 252 GFTGT 256 (409)
T ss_pred CCcCc
Confidence 99985
No 11
>COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]
Probab=99.38 E-value=7e-13 Score=104.77 Aligned_cols=71 Identities=23% Similarity=0.330 Sum_probs=58.5
Q ss_pred CCCeeee----ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhhc
Q psy207 30 HPKKVNL----SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNFG 105 (109)
Q Consensus 30 ~~~kv~L----~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~fg 105 (109)
.++.|++ ||||..+++++++++++.+.+ +.++|+||||.+|+.. + .+.... ...+++|.|||||.||
T Consensus 145 ~~~lv~i~nPNNPTG~~~~~~~l~~l~~~~~~--~~~vVvDEAY~eF~~~----~--~~~l~~-~~~nlivlRTfSKa~g 215 (356)
T COG0079 145 KTKLVFLCNPNNPTGTLLPREELRALLEALPE--GGLVVIDEAYIEFSPE----S--SLELLK-YPPNLIVLRTFSKAFG 215 (356)
T ss_pred CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCC--CcEEEEeCchhhcCCc----h--hhhhcc-CCCCEEEEEecHHhhh
Confidence 5678888 999999999999999998744 4699999999999962 2 222232 5678999999999999
Q ss_pred cCCC
Q psy207 106 LYSR 109 (109)
Q Consensus 106 lyg~ 109 (109)
|+|+
T Consensus 216 LAGl 219 (356)
T COG0079 216 LAGL 219 (356)
T ss_pred cchh
Confidence 9985
No 12
>PRK06348 aspartate aminotransferase; Provisional
Probab=99.37 E-value=8.5e-13 Score=103.43 Aligned_cols=76 Identities=22% Similarity=0.331 Sum_probs=61.0
Q ss_pred CCCeeee----ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhhc
Q psy207 30 HPKKVNL----SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNFG 105 (109)
Q Consensus 30 ~~~kv~L----~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~fg 105 (109)
.++.|.+ ||||..++.++|++|+++++++ ++++|.|++|.+|.++. ....+..+.....++++++||||+||
T Consensus 162 ~~~~v~l~~p~NPtG~~~s~~~~~~l~~~a~~~-~~~ii~De~y~~~~~~~---~~~~~~~~~~~~~~vi~~~SfSK~~~ 237 (384)
T PRK06348 162 KTKAIILNSPNNPTGAVFSKETLEEIAKIAIEY-DLFIISDEVYDGFSFYE---DFVPMATLAGMPERTITFGSFSKDFA 237 (384)
T ss_pred CccEEEEeCCCCCCCcCCCHHHHHHHHHHHHHC-CeEEEEecccccceeCC---CccchhhcCCCcCcEEEEecchhccC
Confidence 4566666 9999999999999999999999 99999999999998763 11122223223568999999999999
Q ss_pred cCCC
Q psy207 106 LYSR 109 (109)
Q Consensus 106 lyg~ 109 (109)
++|+
T Consensus 238 l~Gl 241 (384)
T PRK06348 238 MTGW 241 (384)
T ss_pred Cccc
Confidence 9985
No 13
>PLN00143 tyrosine/nicotianamine aminotransferase; Provisional
Probab=99.37 E-value=9.7e-13 Score=104.34 Aligned_cols=77 Identities=12% Similarity=0.151 Sum_probs=61.1
Q ss_pred CCCCeeee----ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhh
Q psy207 29 PHPKKVNL----SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNF 104 (109)
Q Consensus 29 ~~~~kv~L----~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~f 104 (109)
..++++.+ ||||..++.++|++|+++++++ ++++|.|++|.+|.++.. ....+..+ ....++++++||||+|
T Consensus 169 ~~~~~~~~~nP~NPTG~~~s~~~~~~l~~~a~~~-~~~ii~De~Y~~l~~~~~--~~~~~~~~-~~~~~vi~~~SfSK~f 244 (409)
T PLN00143 169 ENTIAMVIINPGNPCGSVYSYEHLNKIAETARKL-GILVIADEVYGHIVFGSK--PFVPMGLF-ASIVPVITLGSISKRW 244 (409)
T ss_pred cCCEEEEEECCCCCCCCccCHHHHHHHHHHHHHc-CCeEEEEccccccccCCC--CCcchhhh-cccCcEEEEccchhhc
Confidence 34566666 9999999999999999999999 999999999999987531 11122222 2345799999999999
Q ss_pred ccCCC
Q psy207 105 GLYSR 109 (109)
Q Consensus 105 glyg~ 109 (109)
+++|+
T Consensus 245 ~~pGl 249 (409)
T PLN00143 245 MIPGW 249 (409)
T ss_pred CCCcc
Confidence 99985
No 14
>PRK06358 threonine-phosphate decarboxylase; Provisional
Probab=99.37 E-value=1.7e-12 Score=101.06 Aligned_cols=76 Identities=16% Similarity=0.281 Sum_probs=60.9
Q ss_pred CCCeeee----ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhhc
Q psy207 30 HPKKVNL----SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNFG 105 (109)
Q Consensus 30 ~~~kv~L----~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~fg 105 (109)
.++.|.+ ||||..++++++++|+++++++ ++++|+|++|.+|..+... ...+..+ +...++++++||||+||
T Consensus 141 ~~~~v~~~~P~NPtG~~~~~~~~~~l~~~a~~~-~~~ii~De~Y~~~~~~~~~--~~~~~~~-~~~~~vi~~~S~SK~~g 216 (354)
T PRK06358 141 EIDLVFLCNPNNPTGQLISKEEMKKILDKCEKR-NIYLIIDEAFMDFLEENET--ISMINYL-ENFKNLIIIRAFTKFFA 216 (354)
T ss_pred CCCEEEEeCCCCCCCCccCHHHHHHHHHHHHhc-CCEEEEeCcccccCCCccc--hhHHHhc-cCCCCEEEEEechhhcc
Confidence 3555555 9999999999999999999999 9999999999999865311 1122222 34578999999999999
Q ss_pred cCCC
Q psy207 106 LYSR 109 (109)
Q Consensus 106 lyg~ 109 (109)
|+|+
T Consensus 217 l~G~ 220 (354)
T PRK06358 217 IPGL 220 (354)
T ss_pred Ccch
Confidence 9984
No 15
>PRK07366 succinyldiaminopimelate transaminase; Validated
Probab=99.37 E-value=6.2e-13 Score=104.08 Aligned_cols=78 Identities=8% Similarity=0.050 Sum_probs=60.1
Q ss_pred CCCeeee----ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhhc
Q psy207 30 HPKKVNL----SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNFG 105 (109)
Q Consensus 30 ~~~kv~L----~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~fg 105 (109)
.++.+.| ||||..++.+++++|+++++++ ++++|.||+|.+|.+++.. ....+..+...+.++++++||||+||
T Consensus 165 ~~k~i~l~~p~NPTG~~~s~~~~~~l~~~a~~~-~~~ii~De~Y~~~~~~~~~-~~~~~~~~~~~~~~vi~~~SfSK~~g 242 (388)
T PRK07366 165 QARLMVLSYPHNPTTAIAPLSFFQEAVAFCQQH-DLVLVHDFPYVDLVFDGEV-EPPSILQADPEKSVSIEFFTLSKSYN 242 (388)
T ss_pred cceEEEEeCCCCCCCccCCHHHHHHHHHHHHHc-CeEEEEecchhhcccCCCC-CCCChhhCCCCcccEEEEeecccccC
Confidence 3555666 9999999999999999999999 9999999999999865311 01122222223457899999999999
Q ss_pred cCCC
Q psy207 106 LYSR 109 (109)
Q Consensus 106 lyg~ 109 (109)
+.|+
T Consensus 243 ~~Gl 246 (388)
T PRK07366 243 MGGF 246 (388)
T ss_pred Ccch
Confidence 9985
No 16
>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A ....
Probab=99.37 E-value=1.2e-12 Score=100.53 Aligned_cols=70 Identities=26% Similarity=0.385 Sum_probs=58.7
Q ss_pred ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhhccCCC
Q psy207 37 SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNFGLYSR 109 (109)
Q Consensus 37 ~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~fglyg~ 109 (109)
||||..++.++|++|+++++++ ++++|+|++|.+|..++. +...+....+...+++++.||||+||+.|+
T Consensus 159 nPtG~~~~~~~l~~l~~~~~~~-~~~ii~De~y~~~~~~~~--~~~~~~~~~~~~~~vi~~~S~SK~~g~~Gl 228 (363)
T PF00155_consen 159 NPTGSVLSLEELRELAELAREY-NIIIIVDEAYSDLIFGDP--DFGPIRSLLDEDDNVIVVGSLSKSFGLPGL 228 (363)
T ss_dssp TTTTBB--HHHHHHHHHHHHHT-TSEEEEEETTTTGBSSSS--HTHHHHGHHTTTSTEEEEEESTTTTTSGGG
T ss_pred cccccccccccccchhhhhccc-ccceeeeeceeccccCCC--ccCcccccccccccceeeeecccccccccc
Confidence 9999999999999999999999 999999999999999863 444434444566779999999999999883
No 17
>PRK08056 threonine-phosphate decarboxylase; Provisional
Probab=99.35 E-value=2.9e-12 Score=99.49 Aligned_cols=75 Identities=15% Similarity=0.237 Sum_probs=60.6
Q ss_pred CCCCeeee----ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhh
Q psy207 29 PHPKKVNL----SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNF 104 (109)
Q Consensus 29 ~~~~kv~L----~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~f 104 (109)
+.++.|.+ ||||..+++++|++|+++++++ ++++|+|++|.+|..+. .. .+..+ ....++++++||||+|
T Consensus 141 ~~~k~v~l~~p~NPTG~~~~~~~~~~i~~~a~~~-~~~ii~De~y~~~~~~~--~~--~~~~~-~~~~~~i~~~S~SK~~ 214 (356)
T PRK08056 141 PDLDCLFLCTPNNPTGLLPERQLLQAIAERCKSL-NIALILDEAFIDFIPDE--TG--FIPQL-ADNPHLWVLRSLTKFY 214 (356)
T ss_pred CCCCEEEEeCCcCCCCCCCCHHHHHHHHHHHHhc-CCEEEEecchhccCCcc--hH--HHHHh-ccCCCEEEEEechhhc
Confidence 45566666 9999999999999999999999 99999999999998542 11 22222 2356899999999999
Q ss_pred ccCCC
Q psy207 105 GLYSR 109 (109)
Q Consensus 105 glyg~ 109 (109)
|++|+
T Consensus 215 ~~~G~ 219 (356)
T PRK08056 215 AIPGL 219 (356)
T ss_pred cCcch
Confidence 99984
No 18
>KOG0633|consensus
Probab=99.34 E-value=8.8e-13 Score=101.62 Aligned_cols=91 Identities=22% Similarity=0.238 Sum_probs=71.6
Q ss_pred CccCCCChhhchh-----hhhcCCCCCCeeee----ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhh
Q psy207 10 VQQGPPIEVFAVN-----KAYLDDPHPKKVNL----SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERD 80 (109)
Q Consensus 10 v~~~p~d~~f~l~-----~~~~~d~~~~kv~L----~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d 80 (109)
|...|..|-|+++ +-...|..++.+++ ||||..+..+.+++|++.- .+.++++||||.+|.. + ++
T Consensus 135 Vvkvpl~pdF~lnvdai~evl~~ds~iK~~F~tSPgNPtg~~ik~~di~KiLe~p---~nglVVvDEAYidFsg-~--~S 208 (375)
T KOG0633|consen 135 VVKVPLNPDFSLNVDAIAEVLELDSKIKCIFLTSPGNPTGSIIKEDDILKILEMP---DNGLVVVDEAYIDFSG-V--ES 208 (375)
T ss_pred EEEecCCCCccccHHHHHHHHhccccceEEEEcCCCCCCcccccHHHHHHHHhCC---CCcEEEEeeeeEeecc-c--cc
Confidence 4455666678773 55667778888888 9999999999999999843 2469999999999984 2 22
Q ss_pred HHHHHHhHHhCCcEEEEechhhhhccCCC
Q psy207 81 AFAVRYFAQEGFEFLCSQSFAKNFGLYSR 109 (109)
Q Consensus 81 ~~~l~~~~~~~~~~~v~~SfSK~fglyg~ 109 (109)
+ -.++...+|++|+|+|||+|||+|.
T Consensus 209 ~---~~lV~kYpNLivlqTlSKsfGLAGi 234 (375)
T KOG0633|consen 209 R---MKLVKKYPNLIVLQTLSKSFGLAGI 234 (375)
T ss_pred c---chHhHhCCceeehhhhhhhcCccee
Confidence 2 1245788999999999999999984
No 19
>TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic. This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs.
Probab=99.33 E-value=2.3e-12 Score=101.38 Aligned_cols=76 Identities=9% Similarity=0.109 Sum_probs=59.8
Q ss_pred CCCeeee----ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhhc
Q psy207 30 HPKKVNL----SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNFG 105 (109)
Q Consensus 30 ~~~kv~L----~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~fg 105 (109)
.++.|.+ ||||..++.++|++|+++++++ ++++|+|++|.+|.++. +....+..+. ...++++++||||+||
T Consensus 168 ~~~~v~~~~p~NPtG~~~~~~~~~~l~~~a~~~-~~~ii~De~y~~~~~~~--~~~~~~~~~~-~~~~vi~~~SfSK~~~ 243 (401)
T TIGR01264 168 KTAALIVNNPSNPCGSVFSRQHLEEILAVAERQ-CLPIIADEIYGDMVFSG--ATFEPLASLS-STVPILSCGGLAKRWL 243 (401)
T ss_pred CceEEEEcCCCCCCCCCCCHHHHHHHHHHHHHC-CCEEEEEhhhhhhccCC--cccccHHHcC-CCCcEEEEccCcccCC
Confidence 4566666 9999999999999999999999 99999999999998653 1222222222 2235999999999999
Q ss_pred cCCC
Q psy207 106 LYSR 109 (109)
Q Consensus 106 lyg~ 109 (109)
++|+
T Consensus 244 ~~Gl 247 (401)
T TIGR01264 244 VPGW 247 (401)
T ss_pred Cccc
Confidence 9985
No 20
>PRK09276 LL-diaminopimelate aminotransferase; Provisional
Probab=99.32 E-value=1.9e-12 Score=101.13 Aligned_cols=77 Identities=13% Similarity=0.136 Sum_probs=59.4
Q ss_pred CCCeeee----ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhhc
Q psy207 30 HPKKVNL----SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNFG 105 (109)
Q Consensus 30 ~~~kv~L----~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~fg 105 (109)
.++.|.| ||||..++.++|++|+++++++ ++++|+|++|.+|..+.. ....+..+.....++++++||||+||
T Consensus 166 ~~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~~-~~~ii~De~y~~~~~~~~--~~~~~~~~~~~~~~~i~~~S~SK~~g 242 (385)
T PRK09276 166 KAKLMFINYPNNPTGAVADLEFFEEVVDFAKKY-DIIVCHDAAYSEIAYDGY--KPPSFLEVPGAKDVGIEFHSLSKTYN 242 (385)
T ss_pred cceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHC-CcEEEEecchhheecCCC--CCCChhccCCCcCCEEEEecchhhcC
Confidence 4566666 8999999999999999999999 999999999999986421 11112112222356899999999999
Q ss_pred cCCC
Q psy207 106 LYSR 109 (109)
Q Consensus 106 lyg~ 109 (109)
++|+
T Consensus 243 ~~Gl 246 (385)
T PRK09276 243 MTGW 246 (385)
T ss_pred Ccch
Confidence 9984
No 21
>PRK08354 putative aminotransferase; Provisional
Probab=99.32 E-value=3.9e-12 Score=97.30 Aligned_cols=68 Identities=21% Similarity=0.312 Sum_probs=58.0
Q ss_pred CCeeee----ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhhcc
Q psy207 31 PKKVNL----SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNFGL 106 (109)
Q Consensus 31 ~~kv~L----~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~fgl 106 (109)
++.+.+ ||||..++.++|++|+++++++ ++++|+||+|.+|..++ . .. ...++++++||||+|||
T Consensus 118 ~~~vi~~~P~NPTG~~~~~~~l~~l~~~a~~~-~~~li~De~y~~f~~~~---~--~~-----~~~~vi~~~S~SK~~~l 186 (311)
T PRK08354 118 NSVVFFCNPNNPDGKFYNFKELKPLLDAVEDR-NALLILDEAFIDFVKKP---E--SP-----EGENIIKLRTFTKSYGL 186 (311)
T ss_pred CCEEEEecCCCCCCCccCHHHHHHHHHHhhhc-CcEEEEeCcchhccccc---c--cc-----CCCcEEEEeccHhhcCC
Confidence 455555 9999999999999999999999 99999999999998763 1 11 25689999999999999
Q ss_pred CCC
Q psy207 107 YSR 109 (109)
Q Consensus 107 yg~ 109 (109)
.|.
T Consensus 187 ~Gl 189 (311)
T PRK08354 187 PGI 189 (311)
T ss_pred ccc
Confidence 984
No 22
>PRK08068 transaminase; Reviewed
Probab=99.32 E-value=1.9e-12 Score=101.42 Aligned_cols=77 Identities=14% Similarity=0.114 Sum_probs=58.7
Q ss_pred CCCeeee----ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhhc
Q psy207 30 HPKKVNL----SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNFG 105 (109)
Q Consensus 30 ~~~kv~L----~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~fg 105 (109)
.++.|.| ||||..++.++|++|+++++++ ++++|+||+|.+|..+.. .....+. ..+...++++++||||+||
T Consensus 167 ~~~~v~l~~P~NPTG~~~s~~~~~~l~~la~~~-~~~ii~Deay~~~~~~~~-~~~s~~~-~~~~~~~~i~~~S~SK~~g 243 (389)
T PRK08068 167 KAKLMYLNYPNNPTGAVATKAFFEETVAFAKKH-NIGVVHDFAYGAIGFDGQ-KPVSFLQ-TPGAKDVGIELYTLSKTFN 243 (389)
T ss_pred cceEEEEECCCCCCCCcCCHHHHHHHHHHHHHc-CeEEEEehhhhhhccCCC-CCcChhh-CCCccCCEEEEecchhccC
Confidence 4455555 8999999999999999999999 999999999998875421 1111121 1123457899999999999
Q ss_pred cCCC
Q psy207 106 LYSR 109 (109)
Q Consensus 106 lyg~ 109 (109)
++|+
T Consensus 244 ~~Gl 247 (389)
T PRK08068 244 MAGW 247 (389)
T ss_pred Cccc
Confidence 9985
No 23
>PLN02187 rooty/superroot1
Probab=99.32 E-value=3.2e-12 Score=103.46 Aligned_cols=77 Identities=17% Similarity=0.174 Sum_probs=60.8
Q ss_pred CCCCeeee----ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhh
Q psy207 29 PHPKKVNL----SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNF 104 (109)
Q Consensus 29 ~~~~kv~L----~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~f 104 (109)
..++++.+ ||||..++++++++|+++++++ ++++|.||+|.+|.+++. ....+..+. ...++++++||||.|
T Consensus 203 ~~~~~v~i~nP~NPTG~v~s~e~l~~i~~~a~~~-~i~iI~DE~Y~~l~f~~~--~~~s~~~~~-~~~~vi~l~SfSK~f 278 (462)
T PLN02187 203 ENTVAMVVINPNNPCGNVYSHDHLKKVAETARKL-GIMVISDEVYDRTIFGDN--PFVSMGKFA-SIVPVLTLAGISKGW 278 (462)
T ss_pred CCcEEEEEeCCCCCCCCccCHHHHHHHHHHHHHC-CCEEEEeccccccccCCC--CceeHHHhc-cCCcEEEEecchhhc
Confidence 34556666 8999999999999999999999 999999999999887531 111233332 234699999999999
Q ss_pred ccCCC
Q psy207 105 GLYSR 109 (109)
Q Consensus 105 glyg~ 109 (109)
++.|+
T Consensus 279 ~~pGl 283 (462)
T PLN02187 279 VVPGW 283 (462)
T ss_pred CCccc
Confidence 99985
No 24
>PRK07568 aspartate aminotransferase; Provisional
Probab=99.31 E-value=3.3e-12 Score=99.85 Aligned_cols=78 Identities=19% Similarity=0.284 Sum_probs=60.7
Q ss_pred CCCCeeee----ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhh
Q psy207 29 PHPKKVNL----SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNF 104 (109)
Q Consensus 29 ~~~~kv~L----~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~f 104 (109)
..++.|.+ ||||..++.++|++|+++++++ ++++++|++|.+|..++- ....+..+.....++++++||||+|
T Consensus 161 ~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~~~~~-~~~ii~De~y~~~~~~~~--~~~s~~~~~~~~~~~i~~~S~SK~~ 237 (397)
T PRK07568 161 PKTKAILISNPGNPTGVVYTKEELEMLAEIAKKH-DLFLISDEVYREFVYDGL--KYTSALSLEGLEDRVIIIDSVSKRY 237 (397)
T ss_pred ccceEEEEECCCCCCCccCCHHHHHHHHHHHHHC-CcEEEEeccchhcccCCC--CccChhhcCCCcCCEEEEecchhhc
Confidence 34556655 8999999999999999999999 999999999999986421 1112222222356899999999999
Q ss_pred ccCCC
Q psy207 105 GLYSR 109 (109)
Q Consensus 105 glyg~ 109 (109)
|++|+
T Consensus 238 ~~~G~ 242 (397)
T PRK07568 238 SACGA 242 (397)
T ss_pred cCCCc
Confidence 99884
No 25
>PLN00175 aminotransferase family protein; Provisional
Probab=99.31 E-value=3.8e-12 Score=101.25 Aligned_cols=76 Identities=20% Similarity=0.254 Sum_probs=60.6
Q ss_pred CCCeeee----ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhhc
Q psy207 30 HPKKVNL----SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNFG 105 (109)
Q Consensus 30 ~~~kv~L----~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~fg 105 (109)
.++.|.+ ||||..+++++|++|+++++++ +++++.|++|.+|.++. +...+..+.....++++++||||+||
T Consensus 187 ~~k~i~i~~p~NPtG~~~s~~~l~~l~~~a~~~-~~~ii~De~Y~~l~~~~---~~~s~~~~~~~~~~vi~i~SfSK~~~ 262 (413)
T PLN00175 187 KTRAILINTPHNPTGKMFTREELELIASLCKEN-DVLAFTDEVYDKLAFEG---DHISMASLPGMYERTVTMNSLGKTFS 262 (413)
T ss_pred CceEEEecCCCCCCCcCCCHHHHHHHHHHHHHc-CcEEEEecccCccccCC---cccChhhCCCCcCcEEEEecchhhcc
Confidence 4555655 9999999999999999999999 99999999999998653 11122223233568999999999999
Q ss_pred cCCC
Q psy207 106 LYSR 109 (109)
Q Consensus 106 lyg~ 109 (109)
+.|+
T Consensus 263 ~~G~ 266 (413)
T PLN00175 263 LTGW 266 (413)
T ss_pred Ccch
Confidence 9984
No 26
>PRK01688 histidinol-phosphate aminotransferase; Provisional
Probab=99.30 E-value=3.7e-12 Score=98.99 Aligned_cols=72 Identities=19% Similarity=0.207 Sum_probs=56.9
Q ss_pred CCCeeee----ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhhc
Q psy207 30 HPKKVNL----SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNFG 105 (109)
Q Consensus 30 ~~~kv~L----~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~fg 105 (109)
.++.|.| ||||..++.++|++|++.+++ +.++|+||||.+|.... + .+. +.....+++|++||||.||
T Consensus 145 ~~~lv~l~nPnNPTG~~~~~~~l~~l~~~~~~--~~~vivDEay~~f~~~~---s--~~~-~~~~~~n~iv~rSfSK~~g 216 (351)
T PRK01688 145 GVKVVYVCSPNNPTGNLINPQDLRTLLELTRG--KAIVVADEAYIEFCPQA---S--LAG-WLAEYPHLVILRTLSKAFA 216 (351)
T ss_pred CCcEEEEeCCCCCCCCCCCHHHHHHHHHhCCC--CcEEEEECchhhcCCCC---C--hHH-HHhhCCCEEEEecchHhhc
Confidence 4566777 999999999999999998753 45899999999997431 2 222 2245679999999999999
Q ss_pred cCCC
Q psy207 106 LYSR 109 (109)
Q Consensus 106 lyg~ 109 (109)
|+|+
T Consensus 217 laGl 220 (351)
T PRK01688 217 LAGL 220 (351)
T ss_pred CHHH
Confidence 9984
No 27
>PLN02656 tyrosine transaminase
Probab=99.30 E-value=5e-12 Score=100.17 Aligned_cols=77 Identities=16% Similarity=0.144 Sum_probs=61.1
Q ss_pred CCCCeeee----ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhh
Q psy207 29 PHPKKVNL----SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNF 104 (109)
Q Consensus 29 ~~~~kv~L----~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~f 104 (109)
..++.|.+ ||||..++.++|++|+++++++ ++++|+|++|.+|.+++. ....+..+ ....++++++||||+|
T Consensus 168 ~~~~~v~l~~P~NPtG~~~s~~~~~~i~~~a~~~-~~~ii~De~y~~~~~~~~--~~~~~~~~-~~~~~vi~~~SfSK~f 243 (409)
T PLN02656 168 QNTVALVIINPGNPCGNVYSYQHLKKIAETAEKL-KILVIADEVYGHLAFGSN--PFVPMGVF-GSIVPVLTLGSLSKRW 243 (409)
T ss_pred cCceEEEEECCCCCCCCCCCHHHHHHHHHHHHHc-CCEEEEehhhhhcccCCC--CcccHHHh-cccCcEEEEcccchhc
Confidence 34566666 9999999999999999999999 999999999999987531 11122222 2345799999999999
Q ss_pred ccCCC
Q psy207 105 GLYSR 109 (109)
Q Consensus 105 glyg~ 109 (109)
++.|+
T Consensus 244 ~~pGl 248 (409)
T PLN02656 244 IVPGW 248 (409)
T ss_pred cCcce
Confidence 99985
No 28
>PRK08960 hypothetical protein; Provisional
Probab=99.30 E-value=4.3e-12 Score=99.41 Aligned_cols=73 Identities=23% Similarity=0.318 Sum_probs=59.0
Q ss_pred CCCeeee----ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhhc
Q psy207 30 HPKKVNL----SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNFG 105 (109)
Q Consensus 30 ~~~kv~L----~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~fg 105 (109)
.++.+.+ ||||..++.+++++|+++++++ ++++|+|++|.+|.+++ +...+ .....++++++||||+||
T Consensus 165 ~~~~i~i~~p~NPtG~~~~~~~~~~l~~~~~~~-~~~li~De~Y~~~~~~~---~~~~~---~~~~~~vi~~~S~SK~~g 237 (387)
T PRK08960 165 DTVGALVASPANPTGTLLSRDELAALSQALRAR-GGHLVVDEIYHGLTYGV---DAASV---LEVDDDAFVLNSFSKYFG 237 (387)
T ss_pred cceEEEEECCCCCCCcCcCHHHHHHHHHHHHHc-CCEEEEEccccccccCC---CCCCh---hhccCCEEEEeecccccC
Confidence 3445555 9999999999999999999999 99999999999998653 11111 234568999999999999
Q ss_pred cCCC
Q psy207 106 LYSR 109 (109)
Q Consensus 106 lyg~ 109 (109)
++|.
T Consensus 238 ~~Gl 241 (387)
T PRK08960 238 MTGW 241 (387)
T ss_pred Cccc
Confidence 9984
No 29
>PLN00145 tyrosine/nicotianamine aminotransferase; Provisional
Probab=99.29 E-value=4.9e-12 Score=101.28 Aligned_cols=77 Identities=14% Similarity=0.165 Sum_probs=61.6
Q ss_pred CCCCeeee----ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhh
Q psy207 29 PHPKKVNL----SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNF 104 (109)
Q Consensus 29 ~~~~kv~L----~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~f 104 (109)
.+++.+.+ ||||..+++++|++|+++++++ ++++|.|++|.+|.+++. ....+..+ ....++++++||||+|
T Consensus 189 ~~~~~i~i~~P~NPtG~v~~~~~l~~i~~~a~~~-~i~ii~De~Y~~~~~~~~--~~~~~~~~-~~~~~vi~~~S~SK~~ 264 (430)
T PLN00145 189 ENTVAMVIINPNNPCGSVYSYEHLAKIAETARKL-GILVIADEVYDHLTFGSK--PFVPMGVF-GEVAPVLTLGSISKRW 264 (430)
T ss_pred cCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHc-CCEEEEeccchhhccCCC--Cccchhhh-cccCcEEEEecccccc
Confidence 45566666 9999999999999999999999 999999999999987531 11122223 2356899999999999
Q ss_pred ccCCC
Q psy207 105 GLYSR 109 (109)
Q Consensus 105 glyg~ 109 (109)
++.|.
T Consensus 265 ~~pG~ 269 (430)
T PLN00145 265 VVPGW 269 (430)
T ss_pred CCCCe
Confidence 99984
No 30
>PRK07683 aminotransferase A; Validated
Probab=99.29 E-value=4.7e-12 Score=99.44 Aligned_cols=76 Identities=14% Similarity=0.302 Sum_probs=59.8
Q ss_pred CCCeeee----ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhhc
Q psy207 30 HPKKVNL----SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNFG 105 (109)
Q Consensus 30 ~~~kv~L----~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~fg 105 (109)
.++.+.+ ||||..+++++|++|+++++++ ++++|.|++|++|.+++ +...+..+.+...++++++||||+||
T Consensus 161 ~~~~i~i~~p~NPtG~~~s~~~~~~l~~~~~~~-~~~ii~De~y~~~~~~~---~~~~~~~~~~~~~~vi~~~s~SK~~~ 236 (387)
T PRK07683 161 KTRCVVLPYPSNPTGVTLSKEELQDIADVLKDK-NIFVLSDEIYSELVYEQ---PHTSIAHFPEMREKTIVINGLSKSHS 236 (387)
T ss_pred CceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHc-CeEEEEecccccceeCC---CcCChhhccCCcCCeEEEeecccccc
Confidence 3455544 9999999999999999999999 99999999999998653 11123223223457999999999999
Q ss_pred cCCC
Q psy207 106 LYSR 109 (109)
Q Consensus 106 lyg~ 109 (109)
+.|+
T Consensus 237 ~pGl 240 (387)
T PRK07683 237 MTGW 240 (387)
T ss_pred Cccc
Confidence 9985
No 31
>PRK06108 aspartate aminotransferase; Provisional
Probab=99.29 E-value=4.4e-12 Score=98.39 Aligned_cols=78 Identities=14% Similarity=0.247 Sum_probs=60.2
Q ss_pred CCCeeee----ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhhc
Q psy207 30 HPKKVNL----SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNFG 105 (109)
Q Consensus 30 ~~~kv~L----~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~fg 105 (109)
.++.|.+ ||||..++.++|++|+++++++ ++++|+|++|.+|..+. ......+..+.+...++++++||||+||
T Consensus 158 ~~~~i~l~~p~NPtG~~~~~~~~~~l~~~~~~~-~~~li~De~y~~~~~~~-~~~~~~~~~~~~~~~~~i~~~S~SK~~g 235 (382)
T PRK06108 158 RTRALFINSPNNPTGWTASRDDLRAILAHCRRH-GLWIVADEVYERLYYAP-GGRAPSFLDIAEPDDRIIFVNSFSKNWA 235 (382)
T ss_pred cceEEEEECCCCCCCcccCHHHHHHHHHHHHHC-CcEEEEehhhhhhccCC-CCCCCCHhhcCCCcCCEEEEeechhhcc
Confidence 4455666 9999999999999999999999 99999999999998751 1111112222233568999999999999
Q ss_pred cCCC
Q psy207 106 LYSR 109 (109)
Q Consensus 106 lyg~ 109 (109)
+.|+
T Consensus 236 ~~G~ 239 (382)
T PRK06108 236 MTGW 239 (382)
T ss_pred Cccc
Confidence 9884
No 32
>PRK07681 aspartate aminotransferase; Provisional
Probab=99.29 E-value=3.7e-12 Score=100.25 Aligned_cols=77 Identities=18% Similarity=0.158 Sum_probs=59.5
Q ss_pred CCCeeee----ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhhc
Q psy207 30 HPKKVNL----SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNFG 105 (109)
Q Consensus 30 ~~~kv~L----~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~fg 105 (109)
.++.|.+ ||||..+++++|++|+++++++ ++++|.|++|.+|.++.. ....+..+.....++++++||||+||
T Consensus 166 ~~k~v~l~~P~NPTG~~~s~~~~~~i~~~a~~~-~~~iI~De~y~~~~~~~~--~~~~~~~~~~~~~~~i~~~S~SK~~~ 242 (399)
T PRK07681 166 KAKMMILNFPGNPVPAMAHEDFFKEVIAFAKKH-NIIVVHDFAYAEFYFDGN--KPISFLSVPGAKEVGVEINSLSKSYS 242 (399)
T ss_pred cceEEEEeCCCCCcCcCCCHHHHHHHHHHHHHc-CeEEEEeccchhheeCCC--CCCChhhCCCCcccEEEEeecccccC
Confidence 4455555 9999999999999999999999 999999999999986531 11111112223457899999999999
Q ss_pred cCCC
Q psy207 106 LYSR 109 (109)
Q Consensus 106 lyg~ 109 (109)
+.|+
T Consensus 243 ~~Gl 246 (399)
T PRK07681 243 LAGS 246 (399)
T ss_pred Cccc
Confidence 9984
No 33
>PRK12414 putative aminotransferase; Provisional
Probab=99.29 E-value=3.3e-12 Score=100.23 Aligned_cols=77 Identities=12% Similarity=0.169 Sum_probs=59.9
Q ss_pred CCCeeee----ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhhc
Q psy207 30 HPKKVNL----SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNFG 105 (109)
Q Consensus 30 ~~~kv~L----~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~fg 105 (109)
.++.|.+ ||||..++++++++|+++++++ ++++++|++|.+|..++-.. ..+..+.+...++++++||||+||
T Consensus 162 ~~~~v~i~~p~NPTG~~~s~~~~~~i~~~a~~~-~~~ii~De~Y~~~~~~~~~~--~~~~~~~~~~~~~i~~~SfSK~~~ 238 (384)
T PRK12414 162 RTRMIIVNTPHNPSATVFSAADLARLAQLTRNT-DIVILSDEVYEHVVFDGARH--HSMARHRELAERSVIVSSFGKSYH 238 (384)
T ss_pred ccEEEEEcCCCCCCCcCCCHHHHHHHHHHHHHC-CeEEEEhhhhhhccCCCCCc--cCcccCcCccCcEEEEeccccccc
Confidence 4556666 9999999999999999999999 99999999999988653111 112212223457999999999999
Q ss_pred cCCC
Q psy207 106 LYSR 109 (109)
Q Consensus 106 lyg~ 109 (109)
+.|+
T Consensus 239 ~pGl 242 (384)
T PRK12414 239 VTGW 242 (384)
T ss_pred Cccc
Confidence 9985
No 34
>PRK06959 putative threonine-phosphate decarboxylase; Provisional
Probab=99.28 E-value=8.5e-12 Score=96.90 Aligned_cols=70 Identities=11% Similarity=0.099 Sum_probs=56.1
Q ss_pred Ceeee----ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhhccC
Q psy207 32 KKVNL----SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNFGLY 107 (109)
Q Consensus 32 ~kv~L----~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~fgly 107 (109)
+.+.+ ||||..++++++++|++.++++ +.++|+||+|.+|... .+ +..+. ...++++++||||.|||.
T Consensus 132 ~~v~l~nPnNPTG~~~s~~~l~~l~~~~~~~-~~~vI~DEay~~~~~~---~s---~~~~~-~~~~vi~l~SfSK~~gl~ 203 (339)
T PRK06959 132 THLIVVNPNNPTAERLPAARLLRWHAQLAAR-GGTLIVDEAFADTLPA---AS---LAAHT-DRPGLVVLRSVGKFFGLA 203 (339)
T ss_pred CEEEEeCCCCCCCCCCCHHHHHHHHHHHHHc-CCEEEEECCCccCCCc---cc---chhcc-CCCCEEEEecChhhcCCc
Confidence 45555 9999999999999999999888 7888999999999743 12 22222 346799999999999999
Q ss_pred CC
Q psy207 108 SR 109 (109)
Q Consensus 108 g~ 109 (109)
|+
T Consensus 204 Gl 205 (339)
T PRK06959 204 GV 205 (339)
T ss_pred ch
Confidence 84
No 35
>PRK05957 aspartate aminotransferase; Provisional
Probab=99.28 E-value=6.4e-12 Score=98.73 Aligned_cols=77 Identities=17% Similarity=0.240 Sum_probs=60.7
Q ss_pred CCCeeee----ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhhc
Q psy207 30 HPKKVNL----SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNFG 105 (109)
Q Consensus 30 ~~~kv~L----~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~fg 105 (109)
.++.|.+ ||||..++++++++|+++++++ ++++|+|++|.+|.++....- .+..+.+...++++++||||+||
T Consensus 160 ~~klv~~~~p~NPtG~~~~~~~~~~i~~~a~~~-~~~li~De~y~~~~~~~~~~~--~~~~~~~~~~~~i~~~S~SK~~g 236 (389)
T PRK05957 160 KTRAIVTISPNNPTGVVYPEALLRAVNQICAEH-GIYHISDEAYEYFTYDGVKHF--SPGSIPGSGNHTISLYSLSKAYG 236 (389)
T ss_pred CceEEEEeCCCCCCCcCcCHHHHHHHHHHHHHc-CcEEEEeccchhccCCCCCcc--ChhhCCCccCcEEEEecchhhcc
Confidence 4555655 8999999999999999999999 999999999999987632111 11122234568999999999999
Q ss_pred cCCC
Q psy207 106 LYSR 109 (109)
Q Consensus 106 lyg~ 109 (109)
+.|+
T Consensus 237 ~~Gl 240 (389)
T PRK05957 237 FASW 240 (389)
T ss_pred Cccc
Confidence 9984
No 36
>PLN02368 alanine transaminase
Probab=99.28 E-value=1e-11 Score=99.32 Aligned_cols=78 Identities=14% Similarity=0.188 Sum_probs=58.8
Q ss_pred CCeeee----ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCCh-h-hhHHHH-HHhH---HhCCcEEEEech
Q psy207 31 PKKVNL----SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDL-E-RDAFAV-RYFA---QEGFEFLCSQSF 100 (109)
Q Consensus 31 ~~kv~L----~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~-~-~d~~~l-~~~~---~~~~~~~v~~Sf 100 (109)
++.+.+ ||||..++++++++|+++++++ ++++|.||+|.+|.+++. . .....+ ..+. +...++++++||
T Consensus 211 ~k~l~l~nP~NPTG~v~s~e~l~~l~~~a~~~-~~~II~DE~Y~~l~y~~~~~~~s~~~~~~~~~~~~~~~~~vI~~~Sf 289 (407)
T PLN02368 211 VRAMVIINPGNPTGQCLSEANLREILKFCYQE-RLVLLGDEVYQQNIYQDERPFISAKKVLMDMGPPISKEVQLVSFHTV 289 (407)
T ss_pred eEEEEEECCCCCCCccCCHHHHHHHHHHHHHc-CCEEEEEccccccccCCCCCcccHHHHHhhhcccccccceEEEEecC
Confidence 344555 9999999999999999999999 999999999999987531 1 111111 1111 124589999999
Q ss_pred hhhh-ccCCC
Q psy207 101 AKNF-GLYSR 109 (109)
Q Consensus 101 SK~f-glyg~ 109 (109)
||+| ||+|+
T Consensus 290 SK~~~~~~Gl 299 (407)
T PLN02368 290 SKGYWGECGQ 299 (407)
T ss_pred CcccccCCcc
Confidence 9998 89985
No 37
>PRK07324 transaminase; Validated
Probab=99.28 E-value=7.9e-12 Score=97.99 Aligned_cols=74 Identities=14% Similarity=0.215 Sum_probs=59.6
Q ss_pred CCCCeeee----ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhh
Q psy207 29 PHPKKVNL----SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNF 104 (109)
Q Consensus 29 ~~~~kv~L----~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~f 104 (109)
+.++.|.+ ||||..++++++++|+++++++ ++++|+|++|.+|.++. .... +.+...+.++++||||+|
T Consensus 152 ~~~kli~i~~p~NPtG~~~~~~~l~~i~~~a~~~-~~~ii~De~y~~l~~~~---~~~s---~~~~~~~~I~~~s~SK~~ 224 (373)
T PRK07324 152 PNTKLICINNANNPTGALMDRAYLEEIVEIARSV-DAYVLSDEVYRPLDEDG---STPS---IADLYEKGISTNSMSKTY 224 (373)
T ss_pred CCCcEEEEeCCCCCCCCCCCHHHHHHHHHHHHHC-CCEEEEEccccccccCC---CCCC---hhhccCCEEEEecchhhc
Confidence 34566666 8999999999999999999999 99999999999998763 1111 112345789999999999
Q ss_pred ccCCC
Q psy207 105 GLYSR 109 (109)
Q Consensus 105 glyg~ 109 (109)
|+.|.
T Consensus 225 ~~~G~ 229 (373)
T PRK07324 225 SLPGI 229 (373)
T ss_pred CCccc
Confidence 99984
No 38
>PRK07777 aminotransferase; Validated
Probab=99.28 E-value=6.7e-12 Score=98.20 Aligned_cols=77 Identities=17% Similarity=0.181 Sum_probs=59.8
Q ss_pred CCCeeee----ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhhc
Q psy207 30 HPKKVNL----SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNFG 105 (109)
Q Consensus 30 ~~~kv~L----~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~fg 105 (109)
.++.|.| ||||..++.++|++|+++++++ ++++|+|++|.+|.+++- ....+..+.+...++++++||||+||
T Consensus 159 ~~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~~-~~~li~De~y~~~~~~~~--~~~~~~~~~~~~~~~i~~~S~SK~~g 235 (387)
T PRK07777 159 RTRALIVNSPHNPTGTVLTAAELAAIAELAVEH-DLLVITDEVYEHLVFDGA--RHLPLATLPGMRERTVTISSAAKTFN 235 (387)
T ss_pred ccEEEEEcCCCCCCCccCCHHHHHHHHHHHHhc-CcEEEEeccchhcccCCC--CcccHhhCCCCcCcEEEEeechhhcc
Confidence 4555655 9999999999999999999999 999999999999986431 11122222223457999999999999
Q ss_pred cCCC
Q psy207 106 LYSR 109 (109)
Q Consensus 106 lyg~ 109 (109)
++|+
T Consensus 236 ~~Gl 239 (387)
T PRK07777 236 VTGW 239 (387)
T ss_pred CcCc
Confidence 9884
No 39
>PRK04781 histidinol-phosphate aminotransferase; Provisional
Probab=99.27 E-value=9.3e-12 Score=97.31 Aligned_cols=73 Identities=22% Similarity=0.221 Sum_probs=58.4
Q ss_pred CCCCeeee----ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhh
Q psy207 29 PHPKKVNL----SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNF 104 (109)
Q Consensus 29 ~~~~kv~L----~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~f 104 (109)
..++.|.+ ||||..++.++|+++++.++ + +.++|+||+|.+|..+. . .+.. .+...++++++||||+|
T Consensus 151 ~~~~lv~l~~p~NPTG~~~~~~~~~~l~~~~~-~-~~~iI~Deay~~f~~~~---~--~~~~-~~~~~~vi~~~SfSK~~ 222 (364)
T PRK04781 151 SNAKLVFLCSPSNPAGSAIALDQIERALQALQ-G-KALVVVDEAYGEFSDVP---S--AVGL-LARYDNLAVLRTLSKAH 222 (364)
T ss_pred cCCeEEEEcCCCCCCCCCcCHHHHHHHHHhCC-C-CcEEEEeCcchhhcCCc---c--hHHH-HhhCCCEEEEecChhhc
Confidence 45677777 99999999999999999763 4 67899999999998532 2 2222 24567899999999999
Q ss_pred ccCCC
Q psy207 105 GLYSR 109 (109)
Q Consensus 105 glyg~ 109 (109)
||.|+
T Consensus 223 gl~Gl 227 (364)
T PRK04781 223 ALAAA 227 (364)
T ss_pred ccccc
Confidence 99985
No 40
>PRK07337 aminotransferase; Validated
Probab=99.27 E-value=7.7e-12 Score=97.90 Aligned_cols=73 Identities=21% Similarity=0.330 Sum_probs=59.0
Q ss_pred CCCeeee----ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhhc
Q psy207 30 HPKKVNL----SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNFG 105 (109)
Q Consensus 30 ~~~kv~L----~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~fg 105 (109)
.++.|.+ ||||..++.+++++|+++++++ ++++|+|++|++|..++.... +.....++++++||||+||
T Consensus 163 ~~~~v~l~~p~NPtG~~~~~~~~~~i~~~a~~~-~~~ii~De~y~~~~~~~~~~~------~~~~~~~vi~~~S~SK~~~ 235 (388)
T PRK07337 163 RTRGVLLASPSNPTGTSIAPDELRRIVEAVRAR-GGFTIVDEIYQGLSYDAAPVS------ALSLGDDVITINSFSKYFN 235 (388)
T ss_pred cceEEEEECCCCCCCcCcCHHHHHHHHHHHHHC-CCEEEEeccccccccCCCCcC------hhhccCCEEEEEechhhcC
Confidence 4456665 9999999999999999999999 999999999999986531111 1123567999999999999
Q ss_pred cCCC
Q psy207 106 LYSR 109 (109)
Q Consensus 106 lyg~ 109 (109)
+.|+
T Consensus 236 ~~G~ 239 (388)
T PRK07337 236 MTGW 239 (388)
T ss_pred Cchh
Confidence 9884
No 41
>PRK05664 threonine-phosphate decarboxylase; Reviewed
Probab=99.27 E-value=1e-11 Score=95.87 Aligned_cols=71 Identities=15% Similarity=0.151 Sum_probs=57.1
Q ss_pred CCeeee----ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhhcc
Q psy207 31 PKKVNL----SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNFGL 106 (109)
Q Consensus 31 ~~kv~L----~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~fgl 106 (109)
++.+.+ ||||..++.+++++|++.++++ +.++|.||+|.+|.... . +..+. ...++++++||||+||+
T Consensus 125 ~~~v~l~nP~NPTG~~~s~~~l~~l~~~~~~~-~~~iI~DE~y~~~~~~~---s---~~~~~-~~~~vi~~~SfSK~~gl 196 (330)
T PRK05664 125 LDVLVVVNPNNPTGRRFDPARLLAWHARLAAR-GGWLVVDEAFMDNTPQH---S---LAACA-HRPGLIVLRSFGKFFGL 196 (330)
T ss_pred CCEEEEeCCcCCCCCccCHHHHHHHHHHHHhc-CCEEEEECCcccCCCcc---c---ccccc-cCCCEEEEeeccccccC
Confidence 445555 9999999999999999999999 89999999999886321 1 12222 35689999999999999
Q ss_pred CCC
Q psy207 107 YSR 109 (109)
Q Consensus 107 yg~ 109 (109)
.|+
T Consensus 197 ~Gl 199 (330)
T PRK05664 197 AGA 199 (330)
T ss_pred CCc
Confidence 985
No 42
>PRK07682 hypothetical protein; Validated
Probab=99.27 E-value=5.1e-12 Score=98.48 Aligned_cols=76 Identities=14% Similarity=0.219 Sum_probs=60.5
Q ss_pred CCCeeee----ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhhc
Q psy207 30 HPKKVNL----SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNFG 105 (109)
Q Consensus 30 ~~~kv~L----~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~fg 105 (109)
.++.|.+ ||||..+++++|++|+++++++ ++++|+|++|.+|.++. ....+..+.+...+++++.||||.||
T Consensus 154 ~~~~v~~~~p~NPtG~~~s~~~~~~l~~~~~~~-~~~ii~De~y~~~~~~~---~~~~~~~~~~~~~~~i~~~S~SK~~~ 229 (378)
T PRK07682 154 KTKAILLCSPNNPTGAVLNKSELEEIAVIVEKH-DLIVLSDEIYAELTYDE---AYTSFASIKGMRERTILISGFSKGFA 229 (378)
T ss_pred ccEEEEEECCCCCcCcCcCHHHHHHHHHHHHHc-CcEEEEehhhhhcccCC---CCCChhhcccccCCEEEEecCccccc
Confidence 4555655 9999999999999999999999 99999999999998763 11122222233468999999999999
Q ss_pred cCCC
Q psy207 106 LYSR 109 (109)
Q Consensus 106 lyg~ 109 (109)
+.|+
T Consensus 230 ~~Gl 233 (378)
T PRK07682 230 MTGW 233 (378)
T ss_pred Chhh
Confidence 9884
No 43
>PTZ00433 tyrosine aminotransferase; Provisional
Probab=99.27 E-value=7.8e-12 Score=99.04 Aligned_cols=76 Identities=17% Similarity=0.161 Sum_probs=59.6
Q ss_pred CCCeeee----ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhhc
Q psy207 30 HPKKVNL----SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNFG 105 (109)
Q Consensus 30 ~~~kv~L----~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~fg 105 (109)
.++.|.+ ||||..+++++|++|+++++++ ++++|+|++|.+|.++.. ....+..+. ...++++++||||+||
T Consensus 177 ~~~~i~~~~p~NPtG~~~s~~~~~~l~~~a~~~-~~~ii~De~y~~~~~~~~--~~~~~~~~~-~~~~~i~~~SfSK~~~ 252 (412)
T PTZ00433 177 RTKALIMTNPSNPCGSNFSRKHVEDIIRLCEEL-RLPLISDEIYAGMVFNGA--TFTSVADFD-TTVPRVILGGTAKNLV 252 (412)
T ss_pred CceEEEEeCCCCCCCcccCHHHHHHHHHHHHHc-CCeEEEeccccccccCCC--Cccchhhcc-CCCceEEEccchhhcC
Confidence 4566666 8999999999999999999999 999999999999986531 111232232 2335889999999999
Q ss_pred cCCC
Q psy207 106 LYSR 109 (109)
Q Consensus 106 lyg~ 109 (109)
+.|+
T Consensus 253 ~pGl 256 (412)
T PTZ00433 253 VPGW 256 (412)
T ss_pred CCCe
Confidence 9985
No 44
>PRK08912 hypothetical protein; Provisional
Probab=99.27 E-value=5.5e-12 Score=98.68 Aligned_cols=77 Identities=14% Similarity=0.086 Sum_probs=59.3
Q ss_pred CCCeeee----ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhhc
Q psy207 30 HPKKVNL----SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNFG 105 (109)
Q Consensus 30 ~~~kv~L----~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~fg 105 (109)
.++.|.+ ||||..++.++|++|+++++++ ++++|+|++|.+|..++. ....+..+.+...+++++.||||+||
T Consensus 159 ~~~~v~l~~p~NPtG~~~s~~~~~~i~~~~~~~-~~~ii~De~y~~~~~~~~--~~~~~~~~~~~~~~~i~~~S~SK~~g 235 (387)
T PRK08912 159 RTKAVLLNNPLNPAGKVFPREELALLAEFCQRH-DAVAICDEVWEHVVFDGR--RHIPLMTLPGMRERTVKIGSAGKIFS 235 (387)
T ss_pred cceEEEEeCCCCCcCcccCHHHHHHHHHHHHHC-CeEEEEhhhhhhcccCCC--CCcChhhCCCccCceEEEeechhhcc
Confidence 4455555 9999999999999999999999 999999999999886531 11111112122357999999999999
Q ss_pred cCCC
Q psy207 106 LYSR 109 (109)
Q Consensus 106 lyg~ 109 (109)
++|+
T Consensus 236 ~~Gl 239 (387)
T PRK08912 236 LTGW 239 (387)
T ss_pred CcCc
Confidence 9984
No 45
>TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase. This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella.
Probab=99.26 E-value=1.5e-11 Score=94.76 Aligned_cols=72 Identities=19% Similarity=0.183 Sum_probs=58.5
Q ss_pred CCeeee----ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhhcc
Q psy207 31 PKKVNL----SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNFGL 106 (109)
Q Consensus 31 ~~kv~L----~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~fgl 106 (109)
++.|.+ ||||..++.++|++|+++++++ ++++++|++|++|..+. + +..+.....++++++||||+||+
T Consensus 126 ~~~v~i~~p~NPtG~~~~~~~~~~l~~~a~~~-~~~ii~De~y~~~~~~~---~---~~~~~~~~~~~i~~~S~SK~~g~ 198 (330)
T TIGR01140 126 LDVLVLCNPNNPTGRLIPPETLLALAARLRAR-GGWLVVDEAFIDFTPDA---S---LAPQAARFPGLVVLRSLTKFFGL 198 (330)
T ss_pred CCEEEEeCCCCCCCCCCCHHHHHHHHHHhHhc-CCEEEEECcccccCCcc---c---hhhHhccCCCEEEEEecchhhcC
Confidence 345555 8999999999999999999999 99999999999998541 2 11122335789999999999999
Q ss_pred CCC
Q psy207 107 YSR 109 (109)
Q Consensus 107 yg~ 109 (109)
+|+
T Consensus 199 ~G~ 201 (330)
T TIGR01140 199 AGL 201 (330)
T ss_pred chh
Confidence 884
No 46
>PRK09105 putative aminotransferase; Provisional
Probab=99.26 E-value=1.3e-11 Score=96.90 Aligned_cols=73 Identities=16% Similarity=0.284 Sum_probs=56.7
Q ss_pred CCCCeeee----ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhh
Q psy207 29 PHPKKVNL----SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNF 104 (109)
Q Consensus 29 ~~~~kv~L----~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~f 104 (109)
..++.|.+ ||||..+++++|+++++. .++ +.++|+||+|.+|..+. + .. .+.+...++++++||||+|
T Consensus 164 ~~~~~v~l~nP~NPTG~~~~~~~l~~l~~~-~~~-~~~lIvDEaY~~f~~~~---s--~~-~~~~~~~~vi~~~SfSK~~ 235 (370)
T PRK09105 164 PNAGLIYICNPNNPTGTVTPRADIEWLLAN-KPA-GSVLLVDEAYIHFSDAP---S--VV-DLVAQRKDLIVLRTFSKLY 235 (370)
T ss_pred CCCCEEEEeCCCCCCCcCcCHHHHHHHHHh-CCC-CcEEEEECchHHhccCc---c--hH-HHHhhCCCEEEEecccHhh
Confidence 34455666 999999999999999986 456 78999999999986431 1 11 2234567899999999999
Q ss_pred ccCCC
Q psy207 105 GLYSR 109 (109)
Q Consensus 105 glyg~ 109 (109)
|++|+
T Consensus 236 g~~Gl 240 (370)
T PRK09105 236 GMAGM 240 (370)
T ss_pred cCCcc
Confidence 99984
No 47
>PRK08636 aspartate aminotransferase; Provisional
Probab=99.26 E-value=6.4e-12 Score=99.16 Aligned_cols=70 Identities=11% Similarity=0.149 Sum_probs=55.1
Q ss_pred ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhhccCCC
Q psy207 37 SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNFGLYSR 109 (109)
Q Consensus 37 ~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~fglyg~ 109 (109)
||||..+|.++|++|+++++++ ++++|.|++|.+|.++.. ....+..+......+++++||||+||+.|+
T Consensus 186 NPTG~~~s~~~~~~l~~~a~~~-~~~II~De~Y~~l~~~~~--~~~~~~~~~~~~~~~i~~~S~SK~~~~~Gl 255 (403)
T PRK08636 186 NPTTATVEKSFYERLVALAKKE-RFYIISDIAYADITFDGY--KTPSILEVEGAKDVAVESYTLSKSYNMAGW 255 (403)
T ss_pred CCCCccCCHHHHHHHHHHHHHc-CcEEEEeccchhhccCCC--CCCChhcCCCccccEEEEEecccccCCccc
Confidence 9999999999999999999999 999999999999986521 111222222223456779999999999985
No 48
>PRK09082 methionine aminotransferase; Validated
Probab=99.26 E-value=6.5e-12 Score=98.51 Aligned_cols=77 Identities=17% Similarity=0.204 Sum_probs=60.2
Q ss_pred CCCeeee----ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhhc
Q psy207 30 HPKKVNL----SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNFG 105 (109)
Q Consensus 30 ~~~kv~L----~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~fg 105 (109)
.++.|.+ ||||..+++++|++|+++++++ ++++|+|++|.+|..++- +.. .+..+.+...+++++.||||+||
T Consensus 163 ~~~~v~l~~p~NPtG~~~~~~~~~~i~~~a~~~-~i~li~De~y~~~~~~~~-~~~-s~~~~~~~~~~~i~~~S~SK~~~ 239 (386)
T PRK09082 163 RTRLIILNTPHNPSGTVWSAADMRALWQLIAGT-DIYVLSDEVYEHIVFDGA-GHA-SVLRHPELRERAFVVSSFGKTYH 239 (386)
T ss_pred cceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHC-CEEEEEehhhhhhccCCC-CCC-ChhhCcCccCcEEEEeechhhcc
Confidence 4555656 9999999999999999999999 999999999999987531 111 12112233568999999999999
Q ss_pred cCCC
Q psy207 106 LYSR 109 (109)
Q Consensus 106 lyg~ 109 (109)
++|+
T Consensus 240 ~~G~ 243 (386)
T PRK09082 240 VTGW 243 (386)
T ss_pred chhh
Confidence 9984
No 49
>PRK05942 aspartate aminotransferase; Provisional
Probab=99.26 E-value=6.2e-12 Score=98.87 Aligned_cols=78 Identities=6% Similarity=0.113 Sum_probs=59.1
Q ss_pred CCCCeeee----ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhh
Q psy207 29 PHPKKVNL----SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNF 104 (109)
Q Consensus 29 ~~~~kv~L----~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~f 104 (109)
+.++.|.| ||||..++.++|++|+++++++ ++++|+|++|.+|.+++... ..+..+.+....+++++||||+|
T Consensus 169 ~~~k~i~l~~P~NPtG~~~s~~~~~~i~~~a~~~-~~~iI~De~y~~~~~~~~~~--~~~~~~~~~~~~~i~~~SfSK~~ 245 (394)
T PRK05942 169 QQAKILYFNYPSNPTTATAPREFFEEIVAFARKY-EIMLVHDLCYAELAFDGYQP--TSLLEIPGAKDIGVEFHTLSKTY 245 (394)
T ss_pred ccceEEEEcCCCCCCCCcCCHHHHHHHHHHHHHc-CeEEEEeccchhhccCCCCC--CChhhCCCccccEEEEecchhcc
Confidence 35566665 9999999999999999999999 99999999999998642111 11221212234568899999999
Q ss_pred ccCCC
Q psy207 105 GLYSR 109 (109)
Q Consensus 105 glyg~ 109 (109)
|+.|+
T Consensus 246 ~~~Gl 250 (394)
T PRK05942 246 NMAGW 250 (394)
T ss_pred CChhh
Confidence 99884
No 50
>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.
Probab=99.25 E-value=6.3e-12 Score=98.11 Aligned_cols=77 Identities=17% Similarity=0.155 Sum_probs=58.8
Q ss_pred CCCeeee----ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhhc
Q psy207 30 HPKKVNL----SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNFG 105 (109)
Q Consensus 30 ~~~kv~L----~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~fg 105 (109)
.++.|.+ ||||..++.++|++|+++++++ ++++|.|++|.+|.+++. ....+..+.....+++++.||||+||
T Consensus 164 ~~~~v~i~~P~NPtG~~~~~~~~~~i~~~a~~~-~~~ii~De~y~~l~~~~~--~~~~~~~~~~~~~~~i~~~SfSK~~g 240 (383)
T TIGR03540 164 KAKLMFINYPNNPTGAVAPLKFFKELVEFAKEY-NIIVCHDNAYSEITFDGY--KAPSFLEVDGAKDVGIEFHSLSKTYN 240 (383)
T ss_pred cceEEEEeCCCCCcCccCCHHHHHHHHHHHHHc-CEEEEEecchhhhccCCC--CCcCcccCCCcccCEEEEEecccccC
Confidence 4556666 8999999999999999999999 999999999999876421 11111112112356789999999999
Q ss_pred cCCC
Q psy207 106 LYSR 109 (109)
Q Consensus 106 lyg~ 109 (109)
++|+
T Consensus 241 ~~Gl 244 (383)
T TIGR03540 241 MTGW 244 (383)
T ss_pred Cccc
Confidence 9984
No 51
>PRK06207 aspartate aminotransferase; Provisional
Probab=99.25 E-value=9.6e-12 Score=98.55 Aligned_cols=77 Identities=13% Similarity=0.079 Sum_probs=59.9
Q ss_pred CCCeeee----ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhhc
Q psy207 30 HPKKVNL----SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNFG 105 (109)
Q Consensus 30 ~~~kv~L----~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~fg 105 (109)
.++.|.+ ||||..++.+++++|+++++++ ++++|.|++|.+|.++.- ....+..+.....+++++.||||+||
T Consensus 178 ~~k~v~l~~P~NPTG~~~s~e~l~~l~~~a~~~-~~~iI~De~Y~~~~~~~~--~~~~~~~~~~~~~~vi~i~SfSK~~~ 254 (405)
T PRK06207 178 GVRVFLFSNPNNPAGVVYSAEEIAQIAALARRY-GATVIVDQLYSRLLYDGT--SYTHLRALPIDPENVITIMGPSKTES 254 (405)
T ss_pred cCeEEEECCCCCCCCcCCCHHHHHHHHHHHHHc-CCEEEEeccccccccCCC--CCCchhcCCCCcCcEEEEecchhhcc
Confidence 3455555 9999999999999999999999 999999999999986421 11112222223568999999999999
Q ss_pred cCCC
Q psy207 106 LYSR 109 (109)
Q Consensus 106 lyg~ 109 (109)
+.|+
T Consensus 255 lpGl 258 (405)
T PRK06207 255 LSGY 258 (405)
T ss_pred Cccc
Confidence 9984
No 52
>PRK09147 succinyldiaminopimelate transaminase; Provisional
Probab=99.24 E-value=1.4e-11 Score=96.71 Aligned_cols=79 Identities=14% Similarity=0.115 Sum_probs=60.1
Q ss_pred CCCeeee----ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhH----HhCCcEEEEechh
Q psy207 30 HPKKVNL----SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFA----QEGFEFLCSQSFA 101 (109)
Q Consensus 30 ~~~kv~L----~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~----~~~~~~~v~~SfS 101 (109)
.++.+.| ||||..++++++++|+++++++ ++++|.||+|.+|.+++-......+.... ....++++++|||
T Consensus 166 ~~k~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~-~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~S 244 (396)
T PRK09147 166 RTQLLFVCSPGNPTGAVLPLDDWKKLFALSDRY-GFVIASDECYSEIYFDEAAPPLGLLEAAAELGRDDFKRLVVFHSLS 244 (396)
T ss_pred ccEEEEEcCCCCCcCccCCHHHHHHHHHHHHHc-CeEEEeeccccccccCCCCCCchhhhhccccCccccccEEEEeccc
Confidence 4566666 9999999999999999999999 99999999999998653101111121111 1246899999999
Q ss_pred hhhccCCC
Q psy207 102 KNFGLYSR 109 (109)
Q Consensus 102 K~fglyg~ 109 (109)
|.||+.|+
T Consensus 245 K~~~~~Gl 252 (396)
T PRK09147 245 KRSNVPGL 252 (396)
T ss_pred cccCCccc
Confidence 99999984
No 53
>TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases. This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley.
Probab=99.24 E-value=1.7e-11 Score=96.70 Aligned_cols=77 Identities=14% Similarity=0.190 Sum_probs=61.0
Q ss_pred CCCCeeee----ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhh
Q psy207 29 PHPKKVNL----SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNF 104 (109)
Q Consensus 29 ~~~~kv~L----~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~f 104 (109)
.+++.|.+ ||||..++.++|++|+++++++ ++++|+|++|.+|..++ +....+..+. ...+++++.||||+|
T Consensus 168 ~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~-~~~ii~De~y~~~~~~~--~~~~~~~~~~-~~~~vi~~~S~SK~~ 243 (403)
T TIGR01265 168 EKTVAIVVINPSNPCGSVFSRDHLQKIAEVARKL-GIPIIADEIYGHMVFGD--APFIPMASFA-SIVPVLSLGGISKRW 243 (403)
T ss_pred cCccEEEEecCCCCCCCCCCHHHHHHHHHHHHHC-CCEEEEEccccccccCC--CCccchhhhc-cCCcEEEEeeccccc
Confidence 34566666 9999999999999999999999 99999999999998653 1111232232 345799999999999
Q ss_pred ccCCC
Q psy207 105 GLYSR 109 (109)
Q Consensus 105 glyg~ 109 (109)
++.|+
T Consensus 244 ~~pGl 248 (403)
T TIGR01265 244 VVPGW 248 (403)
T ss_pred CCCcc
Confidence 99985
No 54
>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase. This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=99.24 E-value=1.5e-11 Score=96.51 Aligned_cols=79 Identities=18% Similarity=0.095 Sum_probs=59.8
Q ss_pred CCCeeee----ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHH----hCCcEEEEechh
Q psy207 30 HPKKVNL----SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQ----EGFEFLCSQSFA 101 (109)
Q Consensus 30 ~~~kv~L----~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~----~~~~~~v~~SfS 101 (109)
.++.|.+ ||||..++.+++++|+++++++ ++++|.|++|.+|..++...-...+..+.. ...++++++|||
T Consensus 165 ~~k~i~l~~p~NPtG~~~s~~~~~~l~~~a~~~-~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~S 243 (393)
T TIGR03538 165 RCQLLFVCSPGNPTGAVLSLDTLKKLIELADQY-GFIIASDECYSELYFDEGNPPAGLLQAAAQLGRDDFRRCLVFHSLS 243 (393)
T ss_pred cceEEEEeCCCCCcCcccCHHHHHHHHHHHHHC-CEEEEECcchhhcccCCCCCCcCHHHhcccccccccccEEEEecch
Confidence 4566666 9999999999999999999999 999999999999986521000001111111 246899999999
Q ss_pred hhhccCCC
Q psy207 102 KNFGLYSR 109 (109)
Q Consensus 102 K~fglyg~ 109 (109)
|.||+.|+
T Consensus 244 K~~~~~Gl 251 (393)
T TIGR03538 244 KRSNLPGL 251 (393)
T ss_pred hhcCCccc
Confidence 99999984
No 55
>PLN02450 1-aminocyclopropane-1-carboxylate synthase
Probab=99.24 E-value=2.2e-11 Score=98.74 Aligned_cols=78 Identities=15% Similarity=0.169 Sum_probs=59.9
Q ss_pred CCCeeee----ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHH-------hCCcEEEEe
Q psy207 30 HPKKVNL----SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQ-------EGFEFLCSQ 98 (109)
Q Consensus 30 ~~~kv~L----~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~-------~~~~~~v~~ 98 (109)
.++.|.| ||||..+++|++++|+++++++ ++++|.||+|.++.+++... ...+....+ ...++++++
T Consensus 191 ~~k~v~l~nP~NPTG~~~s~e~l~~ll~~a~~~-~~~iI~DE~Y~~~~f~~~~~-~s~l~~~~~~~~~~~~~~~~vi~l~ 268 (468)
T PLN02450 191 KVKGVLITNPSNPLGTTTTRTELNLLVDFITAK-NIHLISDEIYSGTVFDSPGF-VSVMEVLKDRKLENTDVSNRVHIVY 268 (468)
T ss_pred CeeEEEEecCCCCCCcccCHHHHHHHHHHHHHC-CcEEEEEccccccccCCCCc-ccHHHHhhhcccccCCCCCcEEEEE
Confidence 4555666 8999999999999999999999 99999999999986543111 012222211 246899999
Q ss_pred chhhhhccCCC
Q psy207 99 SFAKNFGLYSR 109 (109)
Q Consensus 99 SfSK~fglyg~ 109 (109)
||||.||+.|+
T Consensus 269 S~SK~~~l~Gl 279 (468)
T PLN02450 269 SLSKDLGLPGF 279 (468)
T ss_pred eccccCCCCCc
Confidence 99999999985
No 56
>PRK09148 aminotransferase; Validated
Probab=99.23 E-value=1.3e-11 Score=97.78 Aligned_cols=77 Identities=14% Similarity=0.112 Sum_probs=57.8
Q ss_pred CCCeeee----ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhhc
Q psy207 30 HPKKVNL----SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNFG 105 (109)
Q Consensus 30 ~~~kv~L----~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~fg 105 (109)
.++.|.+ ||||..++.+++++|+++++++ ++++|+|++|.+|.++.- ....+..+......+++++||||.||
T Consensus 165 ~~~~v~l~~P~NPtG~~~s~~~l~~l~~~a~~~-~~~ii~De~Y~~~~~~~~--~~~s~~~~~~~~~~~i~~~SfSK~~~ 241 (405)
T PRK09148 165 KPIALIVNYPSNPTAYVADLDFYKDVVAFAKKH-DIIILSDLAYSEIYFDGN--PPPSVLQVPGAKDVTVEFTSMSKTFS 241 (405)
T ss_pred cceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHc-CeEEEEeccchhhhcCCC--CCCChhhCCCccCcEEEEeccccccC
Confidence 3444555 8999999999999999999999 999999999999986531 11112112112345788999999999
Q ss_pred cCCC
Q psy207 106 LYSR 109 (109)
Q Consensus 106 lyg~ 109 (109)
+.|+
T Consensus 242 ~pGl 245 (405)
T PRK09148 242 MAGW 245 (405)
T ss_pred Ccch
Confidence 9984
No 57
>TIGR03801 asp_4_decarbox aspartate 4-decarboxylase. This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1).
Probab=99.23 E-value=2e-11 Score=100.80 Aligned_cols=75 Identities=19% Similarity=0.347 Sum_probs=59.7
Q ss_pred CCCCCeeee----ccCCCCCCHHHHHHHHHHHHhC-CCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhh
Q psy207 28 DPHPKKVNL----SVGGCDPTEDQWKQLAQLFKER-PSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAK 102 (109)
Q Consensus 28 d~~~~kv~L----~~~~~~lt~eqw~~i~~~~~~~-p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK 102 (109)
++.++.+.| ||||..++++++++|+++++++ +++++|.||+|..|.... .+ .+. ....++++++||||
T Consensus 238 ~~~~kai~l~nP~NPTG~vls~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~~~--~s--l~~---~~~~~vI~v~SfSK 310 (521)
T TIGR03801 238 DPSIKALFVVNPSNPPSVAMSDESIEKIVDIVANDRPDLMILTDDVYGTFVDDF--RS--LFA---ELPYNTIGVYSFSK 310 (521)
T ss_pred CCCCcEEEEeCCCCCCCCCCCHHHHHHHHHHHHhcCCCeEEEECCCchhhcccc--cc--hhh---hCCCCEEEEEcchh
Confidence 456667776 9999999999999999999874 589999999999998531 11 111 12358999999999
Q ss_pred hhccCCC
Q psy207 103 NFGLYSR 109 (109)
Q Consensus 103 ~fglyg~ 109 (109)
+||++|.
T Consensus 311 ~fg~~G~ 317 (521)
T TIGR03801 311 YFGATGW 317 (521)
T ss_pred hccCchh
Confidence 9999984
No 58
>PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed
Probab=99.22 E-value=1.4e-11 Score=95.68 Aligned_cols=77 Identities=17% Similarity=0.145 Sum_probs=58.9
Q ss_pred CCCeeee----ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHh--HHhCCcEEEEechhhh
Q psy207 30 HPKKVNL----SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYF--AQEGFEFLCSQSFAKN 103 (109)
Q Consensus 30 ~~~kv~L----~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~--~~~~~~~~v~~SfSK~ 103 (109)
.++.|.+ ||||..++.++|++|+++++++ ++++|.|++|.+|..+. .....+... .....++++++||||+
T Consensus 148 ~~~~v~~~~p~NPtG~~~~~~~~~~i~~~a~~~-~~~ii~De~y~~~~~~~--~~~~~~~~~~~~~~~~~~i~~~S~SK~ 224 (364)
T PRK07865 148 RPALIWLNSPSNPTGRVLGVDHLRKVVAWARER-GAVVASDECYLELGWDA--EPVSILDPRVCGGDHTGLLAVHSLSKQ 224 (364)
T ss_pred cceEEEEcCCCCCCCccCCHHHHHHHHHHHHHc-CCEEEEecchhhhccCC--CCCccccccccCCccceEEEEeechhc
Confidence 4456666 9999999999999999999999 99999999999998653 111111100 0124689999999999
Q ss_pred hccCCC
Q psy207 104 FGLYSR 109 (109)
Q Consensus 104 fglyg~ 109 (109)
||+.|+
T Consensus 225 ~~~~Gl 230 (364)
T PRK07865 225 SNLAGY 230 (364)
T ss_pred cCCCce
Confidence 999884
No 59
>PRK06855 aminotransferase; Validated
Probab=99.22 E-value=3.4e-11 Score=96.38 Aligned_cols=76 Identities=11% Similarity=0.169 Sum_probs=58.3
Q ss_pred CCCeeee----ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhhc
Q psy207 30 HPKKVNL----SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNFG 105 (109)
Q Consensus 30 ~~~kv~L----~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~fg 105 (109)
.++.+.+ ||||..++++++++|+++++++ ++++|.|++|.+|.+++- ....+..+.. ...++++.||||+|+
T Consensus 171 ~~~~i~l~~P~NPTG~~~s~~~~~~l~~~a~~~-~~~II~De~Y~~l~~~~~--~~~sl~~~~~-~~~~I~~~S~SK~~~ 246 (433)
T PRK06855 171 SIAGILLINPDNPTGAVYPKEILREIVDIAREY-DLFIICDEIYNNIVYNGK--KTVPLSEVIG-DVPGIALKGISKELP 246 (433)
T ss_pred CceEEEEECCCCCCCcCCCHHHHHHHHHHHHHc-CCEEEEeccccccccCCC--CCCCHHHHcC-cCCeEEEecCccccC
Confidence 3445555 9999999999999999999999 999999999999986431 1112222221 235799999999999
Q ss_pred cCCC
Q psy207 106 LYSR 109 (109)
Q Consensus 106 lyg~ 109 (109)
+.|+
T Consensus 247 ~pGl 250 (433)
T PRK06855 247 WPGS 250 (433)
T ss_pred CCcc
Confidence 9885
No 60
>PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional
Probab=99.21 E-value=2.3e-11 Score=99.35 Aligned_cols=77 Identities=16% Similarity=0.247 Sum_probs=58.4
Q ss_pred CCCCeeee----ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhh
Q psy207 29 PHPKKVNL----SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNF 104 (109)
Q Consensus 29 ~~~~kv~L----~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~f 104 (109)
+.++.|.+ ||||..++++++++|+++++++ ++++|.||+|.+|.+++.. ...+..+. .+..+++++||||+|
T Consensus 280 ~~~k~i~i~nP~NPTG~v~~~~~l~~i~~~a~~~-~~~ii~DE~Y~~~~~~~~~--~~s~~~~~-~~~~vi~~~S~SK~~ 355 (517)
T PRK13355 280 SRTKAIVIINPNNPTGALYPREVLQQIVDIAREH-QLIIFSDEIYDRLVMDGLE--HTSIASLA-PDLFCVTFSGLSKSH 355 (517)
T ss_pred cCceEEEEECCCCCCCcCcCHHHHHHHHHHHHHc-CcEEEEehhhhhhcCCCCC--cccHHHhC-CCCeEEEEecchhhc
Confidence 34555656 9999999999999999999999 9999999999999865311 11221111 233467789999999
Q ss_pred ccCCC
Q psy207 105 GLYSR 109 (109)
Q Consensus 105 glyg~ 109 (109)
|++|.
T Consensus 356 ~~~G~ 360 (517)
T PRK13355 356 MIAGY 360 (517)
T ss_pred cCccc
Confidence 99984
No 61
>PLN02376 1-aminocyclopropane-1-carboxylate synthase
Probab=99.21 E-value=3.7e-11 Score=98.29 Aligned_cols=77 Identities=17% Similarity=0.167 Sum_probs=57.8
Q ss_pred CCCeeee----ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHh------C-CcEEEEe
Q psy207 30 HPKKVNL----SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQE------G-FEFLCSQ 98 (109)
Q Consensus 30 ~~~kv~L----~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~------~-~~~~v~~ 98 (109)
.++.|.| ||||..++++++++|+++++++ ++++|.||+|.++.+++. +...+..+.+. + ..+++++
T Consensus 199 ~~k~l~l~nP~NPTG~~~s~e~l~~L~~~a~~~-~i~lI~DEiY~~~~f~~~--~~~si~~l~~~~~~~~~~~~~v~vv~ 275 (496)
T PLN02376 199 KVKGLILTNPSNPLGTMLDKDTLTNLVRFVTRK-NIHLVVDEIYAATVFAGG--DFVSVAEVVNDVDISEVNVDLIHIVY 275 (496)
T ss_pred CeeEEEEcCCCCCCCccCCHHHHHHHHHHHHHc-CCEEEEEcCccccccCCC--CcccHHHhhccccccccCCCeEEEEE
Confidence 4455666 9999999999999999999999 999999999999875421 11122222111 1 3567899
Q ss_pred chhhhhccCCC
Q psy207 99 SFAKNFGLYSR 109 (109)
Q Consensus 99 SfSK~fglyg~ 109 (109)
||||.||+.|+
T Consensus 276 S~SK~~glpGl 286 (496)
T PLN02376 276 SLSKDMGLPGF 286 (496)
T ss_pred eccccCCCCcc
Confidence 99999999985
No 62
>PRK07309 aromatic amino acid aminotransferase; Validated
Probab=99.21 E-value=3.7e-11 Score=94.53 Aligned_cols=74 Identities=19% Similarity=0.240 Sum_probs=58.0
Q ss_pred CCeeee----ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhhcc
Q psy207 31 PKKVNL----SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNFGL 106 (109)
Q Consensus 31 ~~kv~L----~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~fgl 106 (109)
++.|.| ||||..++.++|++|+++++++ ++++|+|++|.+|..++. ....+..+ ...++++++||||+||+
T Consensus 167 ~~~i~l~~P~NPtG~~~s~~~~~~l~~~~~~~-~~~ii~D~~y~~~~~~~~--~~~~~~~~--~~~~~i~~~S~SK~~g~ 241 (391)
T PRK07309 167 LKAVILNYPANPTGVTYSREQIKALADVLKKY-DIFVISDEVYSELTYTGE--PHVSIAEY--LPDQTILINGLSKSHAM 241 (391)
T ss_pred eEEEEEECCCCCCCcCcCHHHHHHHHHHHHHc-CcEEEEEccccceeeCCC--CCCCHHHh--ccCCEEEEecChhhccC
Confidence 455555 8999999999999999999999 999999999999986321 11111111 23579999999999999
Q ss_pred CCC
Q psy207 107 YSR 109 (109)
Q Consensus 107 yg~ 109 (109)
+|+
T Consensus 242 ~Gl 244 (391)
T PRK07309 242 TGW 244 (391)
T ss_pred ccc
Confidence 984
No 63
>PLN02607 1-aminocyclopropane-1-carboxylate synthase
Probab=99.21 E-value=4.3e-11 Score=96.70 Aligned_cols=79 Identities=13% Similarity=0.123 Sum_probs=58.9
Q ss_pred CCCeeee----ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChh-hhHHHH-HHhH--HhCCcEEEEechh
Q psy207 30 HPKKVNL----SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLE-RDAFAV-RYFA--QEGFEFLCSQSFA 101 (109)
Q Consensus 30 ~~~kv~L----~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~-~d~~~l-~~~~--~~~~~~~v~~SfS 101 (109)
..+.+.| ||||..+++|+|++|+++++++ ++++|+||+|.++.+++.+ .+...+ .... ....++++++|||
T Consensus 200 ~vk~lll~nP~NPtG~~~s~e~l~~l~~~~~~~-~i~lI~DEiYa~~~f~~~~f~S~~s~~~~~~~~~~~~~v~vi~s~S 278 (447)
T PLN02607 200 RVRGVLITNPSNPLGATVQRSVLEDILDFVVRK-NIHLVSDEIYSGSVFSASEFVSVAEIVEARGYKGVAERVHIVYSLS 278 (447)
T ss_pred CeeEEEEeCCCCCcCcccCHHHHHHHHHHHHHC-CCEEEEeccccccccCCCCcccHHHHHhhcCCCCCcCcEEEEEcch
Confidence 3445555 9999999999999999999999 9999999999997665311 121111 1110 1145799999999
Q ss_pred hhhccCCC
Q psy207 102 KNFGLYSR 109 (109)
Q Consensus 102 K~fglyg~ 109 (109)
|.||+.|+
T Consensus 279 K~fg~~Gl 286 (447)
T PLN02607 279 KDLGLPGF 286 (447)
T ss_pred hcCCCCcc
Confidence 99999985
No 64
>PRK06290 aspartate aminotransferase; Provisional
Probab=99.21 E-value=1.6e-11 Score=97.88 Aligned_cols=76 Identities=16% Similarity=0.192 Sum_probs=59.2
Q ss_pred CCCeeee----ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhhc
Q psy207 30 HPKKVNL----SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNFG 105 (109)
Q Consensus 30 ~~~kv~L----~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~fg 105 (109)
.++.|.| ||||..++.+++++|+++++++ ++++|.|++|.+|.+++.... .. .+.....++++++||||.||
T Consensus 179 ~~k~i~l~nP~NPTG~v~s~e~l~~l~~la~~~-~~~iI~DEaY~~~~~~~~~~s--~~-~~~~~~~~~I~i~SfSK~~g 254 (410)
T PRK06290 179 KAKLLYLNYPNNPTGAVATKEFYEEVVDFAKEN-NIIVVQDAAYAALTFDGKPLS--FL-SVPGAKEVGVEIHSLSKAYN 254 (410)
T ss_pred cceEEEEECCCCCCCcCCCHHHHHHHHHHHHHc-CeEEEEecchhhceeCCCCcC--hh-cCCCccccEEEEeechhhcC
Confidence 4556666 9999999999999999999999 999999999999976531111 11 12223356799999999999
Q ss_pred cCCC
Q psy207 106 LYSR 109 (109)
Q Consensus 106 lyg~ 109 (109)
+.|+
T Consensus 255 ~~Gl 258 (410)
T PRK06290 255 MTGW 258 (410)
T ss_pred Cchh
Confidence 9984
No 65
>PRK05166 histidinol-phosphate aminotransferase; Provisional
Probab=99.21 E-value=2.3e-11 Score=94.91 Aligned_cols=76 Identities=22% Similarity=0.381 Sum_probs=58.2
Q ss_pred CCCeeee----ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhhc
Q psy207 30 HPKKVNL----SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNFG 105 (109)
Q Consensus 30 ~~~kv~L----~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~fg 105 (109)
.++.|.+ ||||..++.++|++|++.++ + +.++++|++|.+|..+..... .+..+.+...++++++||||.||
T Consensus 159 ~~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~-~-~~~ii~De~y~~~~~~~~~~~--~~~~~~~~~~~vi~i~SfSK~~~ 234 (371)
T PRK05166 159 APRMLMFSNPSNPVGSWLTADQLARVLDATP-P-ETLIVVDEAYAEYAAGDDYPS--ALTLLKARGLPWIVLRTFSKAYG 234 (371)
T ss_pred CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCC-C-CcEEEEECcHHHhcCCcCccc--HHHHHhhcCCCEEEEeechHhhh
Confidence 4566666 99999999999999999764 4 678999999999996531112 23333334568999999999999
Q ss_pred cCCC
Q psy207 106 LYSR 109 (109)
Q Consensus 106 lyg~ 109 (109)
+.|+
T Consensus 235 l~Gl 238 (371)
T PRK05166 235 LAGL 238 (371)
T ss_pred cchh
Confidence 9884
No 66
>PRK08175 aminotransferase; Validated
Probab=99.20 E-value=1.7e-11 Score=96.37 Aligned_cols=77 Identities=13% Similarity=0.128 Sum_probs=58.2
Q ss_pred CCCeeee----ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhhc
Q psy207 30 HPKKVNL----SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNFG 105 (109)
Q Consensus 30 ~~~kv~L----~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~fg 105 (109)
.++.|.+ ||||..++.++|++|+++++++ ++++|.|++|.+|.+++.... .+..+......+++++||||+||
T Consensus 164 ~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~-~i~ii~De~y~~l~~~~~~~~--~~~~~~~~~~~~i~~~S~SK~~g 240 (395)
T PRK08175 164 KPKMMILGFPSNPTAQCVELEFFEKVVALAKRY-DVLVVHDLAYADIVYDGWKAP--SIMQVPGAKDVAVEFFTLSKSYN 240 (395)
T ss_pred CceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHc-CcEEEEecchHhhccCCCCCc--chhcCCCcccCEEEEeecccccc
Confidence 4455555 8999999999999999999999 999999999999986531111 11111112346788999999999
Q ss_pred cCCC
Q psy207 106 LYSR 109 (109)
Q Consensus 106 lyg~ 109 (109)
+.|+
T Consensus 241 ~pGl 244 (395)
T PRK08175 241 MAGW 244 (395)
T ss_pred Ccch
Confidence 9884
No 67
>PRK09275 aspartate aminotransferase; Provisional
Probab=99.19 E-value=2.9e-11 Score=99.99 Aligned_cols=75 Identities=24% Similarity=0.395 Sum_probs=59.1
Q ss_pred CCCCCeeee----ccCCCCCCHHHHHHHHHHHHh-CCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhh
Q psy207 28 DPHPKKVNL----SVGGCDPTEDQWKQLAQLFKE-RPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAK 102 (109)
Q Consensus 28 d~~~~kv~L----~~~~~~lt~eqw~~i~~~~~~-~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK 102 (109)
++.++.+.| ||||..+++++|++|++++++ ++++++|.||+|..|..+. .+ .+. ....++++++||||
T Consensus 239 ~~~tkai~l~nP~NPTG~v~s~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~~~--~s--~~~---~~~~~~I~v~SfSK 311 (527)
T PRK09275 239 DPSIKALFLVNPSNPPSVAMSDESLEKIADIVNEKRPDLMIITDDVYGTFVDDF--RS--LFA---VLPYNTILVYSFSK 311 (527)
T ss_pred CCCCCEEEEeCCcCCcCCCCCHHHHHHHHHHHHhcCCCcEEEECCCChhhcccc--cC--HHH---hCCCCEEEEeehhh
Confidence 455666776 999999999999999999964 3489999999999998531 11 111 12358999999999
Q ss_pred hhccCCC
Q psy207 103 NFGLYSR 109 (109)
Q Consensus 103 ~fglyg~ 109 (109)
+|||+|.
T Consensus 312 ~f~mtG~ 318 (527)
T PRK09275 312 YFGATGW 318 (527)
T ss_pred hccCcHh
Confidence 9999984
No 68
>PRK05839 hypothetical protein; Provisional
Probab=99.19 E-value=3.6e-11 Score=94.22 Aligned_cols=77 Identities=12% Similarity=0.047 Sum_probs=59.2
Q ss_pred CCCeeee----ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHh----HHhCCcEEEEechh
Q psy207 30 HPKKVNL----SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYF----AQEGFEFLCSQSFA 101 (109)
Q Consensus 30 ~~~kv~L----~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~----~~~~~~~~v~~SfS 101 (109)
.++.|.| ||||..++++++++|+++++++ ++++|.||+|.+|..+..... .+... .....++++++|||
T Consensus 155 ~~k~v~i~nP~NPTG~~~s~~~l~~i~~~~~~~-~~~ii~DE~Y~~~~~~~~~~s--~~~~~~~~~~~~~~~vi~~~SfS 231 (374)
T PRK05839 155 EVDLVILNSPNNPTGRTLSLEELIEWVKLALKH-DFILINDECYSEIYENTPPPS--LLEASILVGNESFKNVLVINSIS 231 (374)
T ss_pred cccEEEEeCCCCCcCcccCHHHHHHHHHHHHHc-CCEEEeccchhhcccCCCCCC--HhhhhcccCccccCcEEEEeccc
Confidence 3566666 9999999999999999999999 999999999999975421111 11111 01236899999999
Q ss_pred hhhccCCC
Q psy207 102 KNFGLYSR 109 (109)
Q Consensus 102 K~fglyg~ 109 (109)
|.||+.|+
T Consensus 232 K~~~~~Gl 239 (374)
T PRK05839 232 KRSSAPGL 239 (374)
T ss_pred cccCCccc
Confidence 99999985
No 69
>PRK07550 hypothetical protein; Provisional
Probab=99.18 E-value=3.7e-11 Score=94.00 Aligned_cols=75 Identities=20% Similarity=0.320 Sum_probs=59.0
Q ss_pred CCCeeee----ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhH--HhCCcEEEEechhhh
Q psy207 30 HPKKVNL----SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFA--QEGFEFLCSQSFAKN 103 (109)
Q Consensus 30 ~~~kv~L----~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~--~~~~~~~v~~SfSK~ 103 (109)
.++.|.+ ||||..++.++|++|+++++++ ++++|.|++|.+|..+.. . ....+. +...+++++.||||+
T Consensus 163 ~~~~v~~~~P~NPtG~~~~~~~~~~i~~~~~~~-~~~iI~Dd~y~~~~~~~~--~--~~~~~~~~~~~~~~i~~~S~SK~ 237 (386)
T PRK07550 163 RTRAIALVTPNNPTGVVYPPELLHELYDLARRH-GIALILDETYRDFDSGGG--A--PHDLFADPDWDDTLVHLYSFSKS 237 (386)
T ss_pred cCcEEEEeCCCCCCCcccCHHHHHHHHHHHHHc-CeEEEEeccchhhccCCC--C--CcchhhCCCccccEEEEecchhh
Confidence 4566566 8999999999999999999999 999999999999975421 1 111121 235679999999999
Q ss_pred hccCCC
Q psy207 104 FGLYSR 109 (109)
Q Consensus 104 fglyg~ 109 (109)
||+.|+
T Consensus 238 ~g~~G~ 243 (386)
T PRK07550 238 YALTGH 243 (386)
T ss_pred ccCccc
Confidence 999874
No 70
>PRK08637 hypothetical protein; Provisional
Probab=99.18 E-value=6.5e-11 Score=93.05 Aligned_cols=78 Identities=18% Similarity=0.187 Sum_probs=56.5
Q ss_pred CCCeeee-----ccCCCCCCHHHHHHHHHHHHh-----CCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcE--EEE
Q psy207 30 HPKKVNL-----SVGGCDPTEDQWKQLAQLFKE-----RPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEF--LCS 97 (109)
Q Consensus 30 ~~~kv~L-----~~~~~~lt~eqw~~i~~~~~~-----~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~--~v~ 97 (109)
..+++.+ ||||..+|+++|++|++++++ + ++++|.||+|.+|.+++-... .....+.+...++ +++
T Consensus 145 ~~~~~~~~~~P~NPTG~~~s~~~~~~l~~~~~~~~~~~~-~~~iI~De~Y~~l~~~~~~~~-~~~~~~~~~~~~vi~i~~ 222 (388)
T PRK08637 145 KGKVIVILNFPNNPTGYTPTEKEATAIVEAIKELADAGT-KVVAVVDDAYFGLFYEDSYKE-SLFAALANLHSNILAVKL 222 (388)
T ss_pred CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHHHHHHhcCC-cEEEEecccchhcccCCccch-hhHHHhhcccccceEEEe
Confidence 3455554 999999999999999999875 7 899999999999986531111 1122233344454 455
Q ss_pred echhhhhccCCC
Q psy207 98 QSFAKNFGLYSR 109 (109)
Q Consensus 98 ~SfSK~fglyg~ 109 (109)
+||||.|+++|+
T Consensus 223 ~s~SK~~~~pGl 234 (388)
T PRK08637 223 DGATKEEFVWGF 234 (388)
T ss_pred ccccccCCCccc
Confidence 699999999985
No 71
>PRK01533 histidinol-phosphate aminotransferase; Validated
Probab=99.18 E-value=2.4e-11 Score=95.34 Aligned_cols=75 Identities=19% Similarity=0.292 Sum_probs=57.5
Q ss_pred CCCeeee----ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhhc
Q psy207 30 HPKKVNL----SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNFG 105 (109)
Q Consensus 30 ~~~kv~L----~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~fg 105 (109)
.++.|.| ||||..++.+++++|++.++++ + ++|+||+|.+|..+. .....+..+ +...++++++||||.||
T Consensus 151 ~~~~v~i~~P~NPTG~~~~~~~l~~l~~~~~~~-~-~~iiDe~y~~~~~~~--~~~~~~~~~-~~~~~vi~~~SfSK~~~ 225 (366)
T PRK01533 151 DTKIVWICNPNNPTGTYVNDRKLTQFIEGISEN-T-LIVIDEAYYEYVTAK--DFPETLPLL-EKHKNILVLRTFSKAYG 225 (366)
T ss_pred CCcEEEEeCCCCCCCCCcCHHHHHHHHHhCCCC-C-EEEEEccHHHhhccc--cCcchhHHh-ccCCCEEEEeCchHHhc
Confidence 4566666 9999999999999999998766 5 677799999998642 111122222 34678999999999999
Q ss_pred cCCC
Q psy207 106 LYSR 109 (109)
Q Consensus 106 lyg~ 109 (109)
|.|+
T Consensus 226 l~Gl 229 (366)
T PRK01533 226 LASF 229 (366)
T ss_pred ChHH
Confidence 9984
No 72
>PRK04635 histidinol-phosphate aminotransferase; Provisional
Probab=99.18 E-value=3.6e-11 Score=93.37 Aligned_cols=72 Identities=19% Similarity=0.242 Sum_probs=56.6
Q ss_pred CCCCeeee----ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhh
Q psy207 29 PHPKKVNL----SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNF 104 (109)
Q Consensus 29 ~~~~kv~L----~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~f 104 (109)
..++.|.| ||||..++.+++++|++.+ +++++|+||||.+|.... . ... +.+...++++++||||+|
T Consensus 146 ~~~~li~i~nP~NPTG~~~~~~~l~~l~~~~---~~~~vivDeay~~~~~~~---s--~~~-~~~~~~~~iv~~S~SK~~ 216 (354)
T PRK04635 146 DGAKLVFICNPNNPTGTVIDRADIEQLIEMT---PDAIVVVDEAYIEFCPEY---S--VAD-LLASYPNLVVLRTLSKAF 216 (354)
T ss_pred cCCCEEEEeCCCCCCCccCCHHHHHHHHHhC---CCcEEEEeCchHhhccCc---c--hHH-HHhhCCCEEEEechHHHh
Confidence 45667777 9999999999999999875 367999999999997431 2 111 234567899999999999
Q ss_pred ccCCC
Q psy207 105 GLYSR 109 (109)
Q Consensus 105 glyg~ 109 (109)
|+.|.
T Consensus 217 ~l~Gl 221 (354)
T PRK04635 217 ALAGA 221 (354)
T ss_pred hhhHH
Confidence 99873
No 73
>TIGR03539 DapC_actino succinyldiaminopimelate transaminase. This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=99.18 E-value=2.5e-11 Score=94.33 Aligned_cols=77 Identities=17% Similarity=0.146 Sum_probs=58.6
Q ss_pred CCCeeee----ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHH--hHHhCCcEEEEechhhh
Q psy207 30 HPKKVNL----SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRY--FAQEGFEFLCSQSFAKN 103 (109)
Q Consensus 30 ~~~kv~L----~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~--~~~~~~~~~v~~SfSK~ 103 (109)
.++.|.+ ||||..++.++|++|+++++++ ++++|.|++|.+|.++.. ....+.. ......++++++||||.
T Consensus 142 ~~~~v~~~~p~NPtG~~~~~~~~~~i~~~a~~~-~~~ii~De~y~~~~~~~~--~~~~~~~~~~~~~~~~vi~~~S~SK~ 218 (357)
T TIGR03539 142 GPDLIWLNSPGNPTGRVLSVDELRAIVAWARER-GAVVASDECYLELGWEGR--PVSILDPRVCGGDHTGLLAVHSLSKR 218 (357)
T ss_pred CccEEEEeCCCCCcCccCCHHHHHHHHHHHHHc-CeEEEEecchhhhccCCC--CccceecccCCCccccEEEEeccccc
Confidence 4455655 9999999999999999999999 999999999999886531 1111100 00123579999999999
Q ss_pred hccCCC
Q psy207 104 FGLYSR 109 (109)
Q Consensus 104 fglyg~ 109 (109)
||+.|+
T Consensus 219 ~~~~G~ 224 (357)
T TIGR03539 219 SNLAGY 224 (357)
T ss_pred cCCCce
Confidence 999984
No 74
>KOG0257|consensus
Probab=99.18 E-value=1.3e-11 Score=98.97 Aligned_cols=77 Identities=19% Similarity=0.243 Sum_probs=61.7
Q ss_pred CCCeeee----ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhhc
Q psy207 30 HPKKVNL----SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNFG 105 (109)
Q Consensus 30 ~~~kv~L----~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~fg 105 (109)
.++.|.+ ||||...++||+++|+++++++ ++++|+||+|.-|.+++-+.-+ +..+.....+++-..||||+||
T Consensus 172 kTk~Ii~ntPhNPtGkvfsReeLe~ia~l~~k~-~~lvisDevYe~~v~d~~~h~r--~aslPgm~ertitvgS~gKtf~ 248 (420)
T KOG0257|consen 172 KTKAIILNTPHNPTGKVFSREELERIAELCKKH-GLLVISDEVYEWLVYDGNKHIR--IASLPGMYERTITVGSFGKTFG 248 (420)
T ss_pred CccEEEEeCCCCCcCcccCHHHHHHHHHHHHHC-CEEEEEhhHhHHHhhCCCccee--eecCCchhheEEEeccccceee
Confidence 4566666 9999999999999999999999 9999999999999987421111 1112345568888999999999
Q ss_pred cCCC
Q psy207 106 LYSR 109 (109)
Q Consensus 106 lyg~ 109 (109)
++|.
T Consensus 249 ~TGW 252 (420)
T KOG0257|consen 249 VTGW 252 (420)
T ss_pred eeee
Confidence 9983
No 75
>PTZ00377 alanine aminotransferase; Provisional
Probab=99.17 E-value=7.1e-11 Score=95.62 Aligned_cols=79 Identities=18% Similarity=0.227 Sum_probs=57.7
Q ss_pred CCCeeee----ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCC-Chh-hhHHH-HHHhHHh---CCcEEEEec
Q psy207 30 HPKKVNL----SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASG-DLE-RDAFA-VRYFAQE---GFEFLCSQS 99 (109)
Q Consensus 30 ~~~kv~L----~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g-~~~-~d~~~-l~~~~~~---~~~~~v~~S 99 (109)
.++.+.+ ||||..++++++++|+++++++ ++++|.|++|++|.++ +.. ..... +..+... ..++++++|
T Consensus 218 ~~k~l~l~~P~NPTG~~~s~e~~~~i~~~a~~~-~~~iI~De~Y~~l~~~~~~~~~s~~~~~~~l~~~~~~~~~vi~~~S 296 (481)
T PTZ00377 218 TPRALVVINPGNPTGQVLTRDVMEEIIKFCYEK-GIVLMADEVYQENIYDGEKPFISFRKVLLELPAEYNTDVELVSFHS 296 (481)
T ss_pred CeeEEEEECCCCCCCcCCCHHHHHHHHHHHHHC-CCEEEEehhhHhhccCCCCCcccHHHHHHhhcccccCCeEEEEEec
Confidence 3454555 9999999999999999999999 9999999999998863 211 11111 1112111 236999999
Q ss_pred hhhh-hccCCC
Q psy207 100 FAKN-FGLYSR 109 (109)
Q Consensus 100 fSK~-fglyg~ 109 (109)
|||. |||+|+
T Consensus 297 ~SK~~~~~~Gl 307 (481)
T PTZ00377 297 TSKGIIGECGR 307 (481)
T ss_pred CCcccccCCcC
Confidence 9998 699885
No 76
>PRK03158 histidinol-phosphate aminotransferase; Provisional
Probab=99.16 E-value=5.9e-11 Score=91.81 Aligned_cols=76 Identities=16% Similarity=0.281 Sum_probs=57.9
Q ss_pred CCCCeeee----ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhh
Q psy207 29 PHPKKVNL----SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNF 104 (109)
Q Consensus 29 ~~~~kv~L----~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~f 104 (109)
..++.|.+ ||||..++.++|.++++.+ ++ ++++|+||+|.+|..++...+ .+..+ +...++++++||||+|
T Consensus 150 ~~~~~v~i~~p~NPtG~~~~~~~l~~~~~~~-~~-~~~ii~De~y~~~~~~~~~~~--~~~~~-~~~~~vi~~~S~SK~~ 224 (359)
T PRK03158 150 EQTKIVWICNPNNPTGTYVNHEELLSFLESV-PS-HVLVVLDEAYYEYVTAEDYPD--TLPLL-EKYENLIVLRTFSKAY 224 (359)
T ss_pred CCCCEEEEeCCCCCCCCCCCHHHHHHHHHhC-CC-CcEEEEECchHhhcCCccccc--HHHHH-HhcCCEEEEEechHhh
Confidence 34555655 9999999999999999876 36 889999999999986531112 22222 3556899999999999
Q ss_pred ccCCC
Q psy207 105 GLYSR 109 (109)
Q Consensus 105 glyg~ 109 (109)
|+.|+
T Consensus 225 g~~Gl 229 (359)
T PRK03158 225 GLAAL 229 (359)
T ss_pred cCcch
Confidence 99984
No 77
>PRK08153 histidinol-phosphate aminotransferase; Provisional
Probab=99.16 E-value=5.7e-11 Score=92.92 Aligned_cols=73 Identities=16% Similarity=0.211 Sum_probs=57.2
Q ss_pred CCCCeeee----ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhh
Q psy207 29 PHPKKVNL----SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNF 104 (109)
Q Consensus 29 ~~~~kv~L----~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~f 104 (109)
..++.+.+ ||||..++.+++++|++.++ + +.++|+||+|.+|..+. .... +....+++++++||||+|
T Consensus 154 ~~~~~i~l~~P~NPtG~~~~~~~l~~l~~~~~-~-~~~lI~DE~y~~~~~~~---~~~~---~~~~~~~~i~~~SfSK~~ 225 (369)
T PRK08153 154 ENAPLVYLANPDNPMGSWHPAADIVAFIEALP-E-TTLLVLDEAYCETAPAG---AAPP---IDTDDPNVIRMRTFSKAY 225 (369)
T ss_pred cCCcEEEEeCCCCCCCCCCCHHHHHHHHHhCC-C-CcEEEEeCchhhhcCcc---cchh---hhhcCCCEEEEecchHhc
Confidence 34556656 99999999999999999764 5 77999999999998653 1112 223456899999999999
Q ss_pred ccCCC
Q psy207 105 GLYSR 109 (109)
Q Consensus 105 glyg~ 109 (109)
|+.|+
T Consensus 226 g~~Gl 230 (369)
T PRK08153 226 GLAGA 230 (369)
T ss_pred cCcch
Confidence 99984
No 78
>PRK09265 aminotransferase AlaT; Validated
Probab=99.16 E-value=8.3e-11 Score=92.74 Aligned_cols=76 Identities=11% Similarity=0.243 Sum_probs=58.7
Q ss_pred CCCeeee----ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhhc
Q psy207 30 HPKKVNL----SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNFG 105 (109)
Q Consensus 30 ~~~kv~L----~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~fg 105 (109)
.++.|.+ ||||..++.+++++|+++++++ ++++|+|++|.+|.++.-.. ..+..+. .+.++++++||||+||
T Consensus 168 ~~~~v~l~~P~NPtG~~~~~~~~~~i~~~a~~~-~~~ii~De~y~~~~~~~~~~--~~~~~~~-~~~~vi~~~S~SK~~~ 243 (404)
T PRK09265 168 RTKAIVIINPNNPTGAVYSKELLEEIVEIARQH-NLIIFADEIYDKILYDGAVH--ISIASLA-PDLLCVTFNGLSKAYR 243 (404)
T ss_pred cceEEEEECCCCCCCcCCCHHHHHHHHHHHHHC-CCEEEEehhhhhccCCCCCc--CCHHHcC-CCceEEEEecchhhcc
Confidence 4555665 8999999999999999999999 99999999999998653111 1121121 2346899999999999
Q ss_pred cCCC
Q psy207 106 LYSR 109 (109)
Q Consensus 106 lyg~ 109 (109)
+.|+
T Consensus 244 ~pGl 247 (404)
T PRK09265 244 VAGF 247 (404)
T ss_pred Cccc
Confidence 9884
No 79
>PRK15481 transcriptional regulatory protein PtsJ; Provisional
Probab=99.16 E-value=3.7e-11 Score=95.58 Aligned_cols=73 Identities=19% Similarity=0.314 Sum_probs=57.8
Q ss_pred CCCeeee-----ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhh
Q psy207 30 HPKKVNL-----SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNF 104 (109)
Q Consensus 30 ~~~kv~L-----~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~f 104 (109)
.++.+.+ ||||..++.++|++|++++++++++++|.|++|.+|..+.. .+ .+ .....++++++||||+|
T Consensus 211 ~~k~i~~~p~p~NPTG~~~s~~~~~~l~~la~~~~~~~ii~De~Y~~~~~~~~-~~--~~---~~~~~~vi~~~SfSK~~ 284 (431)
T PRK15481 211 GARAVILTPRAHNPTGCSLSARRAAALRNLLARYPQVLVIIDDHFALLSSSPY-HS--VI---PQTTQRWALIRSVSKAL 284 (431)
T ss_pred CCCEEEECCCCCCCCCccCCHHHHHHHHHHHHhcCCceEEecCchhhhccCCC-CC--CC---cCCCCCEEEEeeecccc
Confidence 4566665 99999999999999999999887889999999999975321 11 11 11346899999999999
Q ss_pred ccCCC
Q psy207 105 GLYSR 109 (109)
Q Consensus 105 glyg~ 109 (109)
| .|+
T Consensus 285 ~-~Gl 288 (431)
T PRK15481 285 G-PDL 288 (431)
T ss_pred C-CCc
Confidence 9 884
No 80
>PLN02231 alanine transaminase
Probab=99.16 E-value=7.7e-11 Score=97.32 Aligned_cols=78 Identities=15% Similarity=0.247 Sum_probs=58.1
Q ss_pred CCCeeee----ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHH------hCCcEEEEec
Q psy207 30 HPKKVNL----SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQ------EGFEFLCSQS 99 (109)
Q Consensus 30 ~~~kv~L----~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~------~~~~~~v~~S 99 (109)
.++.+.+ ||||..+++|+|++|+++++++ ++++|.||+|+++.+++- +....+..+.. ...++++++|
T Consensus 271 ~~k~ivl~nP~NPTG~vls~e~l~~Iv~~a~~~-~l~lI~DEvY~~l~y~~~-~~~~s~~~~~~~~g~~~~~~~vi~l~S 348 (534)
T PLN02231 271 TVRALVVINPGNPTGQVLAEENQRDIVEFCKQE-GLVLLADEVYQENVYVPD-KKFHSFKKVARSMGYGEKDISLVSFQS 348 (534)
T ss_pred CeEEEEEeCCCCCCCcCCCHHHHHHHHHHHHHc-CCEEEEEccchhcccCCC-CCcccHHHHHhhhccccCCceEEEEec
Confidence 3455555 9999999999999999999999 999999999999987421 11112222211 2347999999
Q ss_pred hhhhh-ccCCC
Q psy207 100 FAKNF-GLYSR 109 (109)
Q Consensus 100 fSK~f-glyg~ 109 (109)
|||.| |+.|+
T Consensus 349 ~SK~~~g~pGl 359 (534)
T PLN02231 349 VSKGYYGECGK 359 (534)
T ss_pred cCcccccCCcc
Confidence 99975 88884
No 81
>PRK14809 histidinol-phosphate aminotransferase; Provisional
Probab=99.15 E-value=8.5e-11 Score=91.10 Aligned_cols=72 Identities=26% Similarity=0.338 Sum_probs=56.8
Q ss_pred CCCeeee----ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhhc
Q psy207 30 HPKKVNL----SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNFG 105 (109)
Q Consensus 30 ~~~kv~L----~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~fg 105 (109)
.++.|.+ ||||..++.++|++|++.++ + +.++|.||+|.+|..+. . .+..+ +...++++++||||+||
T Consensus 154 ~~k~i~l~~p~NPTG~~~s~~~~~~l~~~~~-~-~~~iI~De~y~~~~~~~---~--~~~~~-~~~~~vi~~~SfSK~~~ 225 (357)
T PRK14809 154 GERIVYLTSPHNPTGSEIPLDEVEALAERTD-E-ETLVVVDEAYGEFAERP---S--AVALV-EERDDVAVLRTFSKAYG 225 (357)
T ss_pred CCcEEEEeCCCCCCCcCCCHHHHHHHHHhCc-c-CcEEEEechhhhccCCc---h--hHHHH-hhCCCEEEEecchhHhc
Confidence 3556666 99999999999999999875 4 57899999999998542 2 22222 34578999999999999
Q ss_pred cCCC
Q psy207 106 LYSR 109 (109)
Q Consensus 106 lyg~ 109 (109)
+.|+
T Consensus 226 ~~Gl 229 (357)
T PRK14809 226 LAGL 229 (357)
T ss_pred Ccch
Confidence 9984
No 82
>TIGR03537 DapC succinyldiaminopimelate transaminase. Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.
Probab=99.15 E-value=8.3e-11 Score=91.05 Aligned_cols=74 Identities=16% Similarity=0.183 Sum_probs=58.4
Q ss_pred CCCeeee----ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhhc
Q psy207 30 HPKKVNL----SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNFG 105 (109)
Q Consensus 30 ~~~kv~L----~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~fg 105 (109)
.++.+.+ ||||..+++++|++|+++++++ ++++|.|++|.++..++...+ +..+ ...+++++.||||+||
T Consensus 136 ~~~~i~i~~p~NPtG~~~~~~~~~~l~~~a~~~-~~~ii~De~y~~~~~~~~~~~---~~~~--~~~~~i~~~s~SK~~g 209 (350)
T TIGR03537 136 ETKIVWINYPHNPTGATAPRSYLKETIAMCREH-GIILCSDECYTEIYFGEPPHS---ALEV--GIENVLAFHSLSKRSG 209 (350)
T ss_pred ccEEEEEeCCCCCcCcccCHHHHHHHHHHHHHc-CcEEEEeccccccccCCCCCc---hhhc--CcCCEEEEeecccccC
Confidence 4455554 9999999999999999999999 999999999999876642111 1111 2357999999999999
Q ss_pred cCCC
Q psy207 106 LYSR 109 (109)
Q Consensus 106 lyg~ 109 (109)
+.|+
T Consensus 210 ~~Gl 213 (350)
T TIGR03537 210 MTGY 213 (350)
T ss_pred Cccc
Confidence 9884
No 83
>PRK08363 alanine aminotransferase; Validated
Probab=99.14 E-value=8.4e-11 Score=92.45 Aligned_cols=75 Identities=12% Similarity=0.137 Sum_probs=59.1
Q ss_pred CCCeeee----ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhhc
Q psy207 30 HPKKVNL----SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNFG 105 (109)
Q Consensus 30 ~~~kv~L----~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~fg 105 (109)
.++.|.+ ||||..++.++|++|+++++++ ++++|.|++|.+|.... ....+..+. ...++++++||||+|+
T Consensus 166 ~~~~v~l~~p~NPtG~~~~~~~~~~l~~~a~~~-~~~li~Deay~~~~~~~---~~~~~~~~~-~~~~vi~~~SfSK~~~ 240 (398)
T PRK08363 166 KTKAIAVINPNNPTGALYEKKTLKEILDIAGEH-DLPVISDEIYDLMTYEG---KHVSPGSLT-KDVPVIVMNGLSKVYF 240 (398)
T ss_pred ceEEEEEECCCCCCCcCcCHHHHHHHHHHHHHc-CeEEEEhhhhhhhccCC---cccCHHHcC-cCCcEEEEecchhccC
Confidence 4456666 8999999999999999999999 99999999999987542 111222222 3457999999999999
Q ss_pred cCCC
Q psy207 106 LYSR 109 (109)
Q Consensus 106 lyg~ 109 (109)
+.|+
T Consensus 241 ~~Gl 244 (398)
T PRK08363 241 ATGW 244 (398)
T ss_pred Cccc
Confidence 9884
No 84
>PRK14808 histidinol-phosphate aminotransferase; Provisional
Probab=99.14 E-value=1e-10 Score=90.62 Aligned_cols=61 Identities=20% Similarity=0.303 Sum_probs=49.1
Q ss_pred ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhhccCCC
Q psy207 37 SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNFGLYSR 109 (109)
Q Consensus 37 ~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~fglyg~ 109 (109)
||||..+++++|++|+ ++ ++++|+||+|.+|..+ .. .. ..+...++++++||||+||++|+
T Consensus 149 NPTG~~~s~~~l~~l~----~~-~~~ii~DE~Y~~f~~~----~~--~~-~~~~~~~vi~~~S~SK~~~l~Gl 209 (335)
T PRK14808 149 NPTGHVFEREEIERIL----KT-GAFVALDEAYYEFHGE----SY--VD-LLKKYENLAVIRTFSKAFSLAAQ 209 (335)
T ss_pred CCCCCCcCHHHHHHHH----hc-CCEEEEECchhhhcCC----ch--HH-HHHhCCCEEEEEechhhccCccc
Confidence 9999999999999997 36 8899999999999622 11 11 12345689999999999999984
No 85
>PRK02610 histidinol-phosphate aminotransferase; Provisional
Probab=99.13 E-value=1.4e-10 Score=90.82 Aligned_cols=70 Identities=23% Similarity=0.284 Sum_probs=55.0
Q ss_pred CCCeeee----ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhhc
Q psy207 30 HPKKVNL----SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNFG 105 (109)
Q Consensus 30 ~~~kv~L----~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~fg 105 (109)
.++.|.| ||||..++++++++++++. + ++++|.||+|.+|.... .+..+ ....++++++||||+||
T Consensus 168 ~~k~i~l~~P~NPTG~~~s~~~l~~l~~~~--~-~~~iI~De~Y~~~~~~~------~~~~~-~~~~~~ivi~SfSK~~g 237 (374)
T PRK02610 168 PVRVVFVVHPNSPTGNPLTAAELEWLRSLP--E-DILVVIDEAYFEFSQTT------LVGEL-AQHPNWVILRTFSKAFR 237 (374)
T ss_pred CceEEEEeCCCCCCCCCCCHHHHHHHHhcc--C-CcEEEEeccccccCccc------hHHHH-hcCCCEEEEEecchhcc
Confidence 4566666 9999999999999999864 5 78999999999996321 12222 23567999999999999
Q ss_pred cCCC
Q psy207 106 LYSR 109 (109)
Q Consensus 106 lyg~ 109 (109)
+.|+
T Consensus 238 ~~Gl 241 (374)
T PRK02610 238 LAAH 241 (374)
T ss_pred Cccc
Confidence 9985
No 86
>PRK08361 aspartate aminotransferase; Provisional
Probab=99.11 E-value=7.7e-11 Score=92.46 Aligned_cols=75 Identities=13% Similarity=0.314 Sum_probs=57.9
Q ss_pred CCCeeee----ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhhc
Q psy207 30 HPKKVNL----SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNFG 105 (109)
Q Consensus 30 ~~~kv~L----~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~fg 105 (109)
.++.|.+ ||||..++.++|++|+++++++ ++++|+|++|.+|..++.. ...+..+ ...+++++.||||+||
T Consensus 166 ~~~~v~i~~p~NPtG~~~~~~~~~~l~~~~~~~-~~~ii~De~y~~~~~~~~~--~~~~~~~--~~~~~i~~~s~SK~~~ 240 (391)
T PRK08361 166 RTRMIVINYPNNPTGATLDKEVAKAIADIAEDY-NIYILSDEPYEHFLYEGAK--HYPMIKY--APDNTILANSFSKTFA 240 (391)
T ss_pred ccEEEEEeCCCCCCCcCcCHHHHHHHHHHHHHc-CeEEEEEcccccceeCCCC--CCCHhhc--CCCCEEEEecCchhcC
Confidence 4455555 9999999999999999999999 9999999999999754211 1111111 2357899999999999
Q ss_pred cCCC
Q psy207 106 LYSR 109 (109)
Q Consensus 106 lyg~ 109 (109)
+.|+
T Consensus 241 ~~Gl 244 (391)
T PRK08361 241 MTGW 244 (391)
T ss_pred CcHh
Confidence 9883
No 87
>PLN03026 histidinol-phosphate aminotransferase; Provisional
Probab=99.10 E-value=1.7e-10 Score=90.80 Aligned_cols=70 Identities=21% Similarity=0.407 Sum_probs=54.8
Q ss_pred CCCCeeee----ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhh
Q psy207 29 PHPKKVNL----SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNF 104 (109)
Q Consensus 29 ~~~~kv~L----~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~f 104 (109)
..++.|.| ||||..++.+++++|++. .+++++||+|.+|..+. +. +. ..+...++++++||||+|
T Consensus 174 ~~~~~v~l~~P~NPTG~~~~~~~l~~l~~~-----~~~vi~DeaY~~~~~~~---~~--~~-~~~~~~~viv~~SfSK~~ 242 (380)
T PLN03026 174 HKPKLLFLTSPNNPDGSIISDDDLLKILEL-----PILVVLDEAYIEFSTQE---SR--MK-WVKKYDNLIVLRTFSKRA 242 (380)
T ss_pred cCCcEEEEeCCCCCCCCCCCHHHHHHHHhc-----CCEEEEECcchhhcCCc---ch--HH-HHHhCCCEEEEecchHhh
Confidence 45566666 999999999999999873 37999999999997542 21 21 223567899999999999
Q ss_pred ccCCC
Q psy207 105 GLYSR 109 (109)
Q Consensus 105 glyg~ 109 (109)
||+|+
T Consensus 243 glaGl 247 (380)
T PLN03026 243 GLAGL 247 (380)
T ss_pred cCccc
Confidence 99984
No 88
>PRK03967 histidinol-phosphate aminotransferase; Provisional
Probab=99.10 E-value=2e-10 Score=88.87 Aligned_cols=69 Identities=22% Similarity=0.302 Sum_probs=53.3
Q ss_pred CCCCeeee----ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhh
Q psy207 29 PHPKKVNL----SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNF 104 (109)
Q Consensus 29 ~~~~kv~L----~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~f 104 (109)
.+.+.+.+ ||||..++.+++.+++ ++ ++++|+|++|.+|.... ... +.+...++++++||||+|
T Consensus 139 ~~~~~v~~~~P~NPtG~~~~~~~l~~i~----~~-~~~ii~De~y~~~~~~~------~~~-~~~~~~~vi~l~S~SK~~ 206 (337)
T PRK03967 139 KNASAVFICSPNNPTGNLQPEEEILKVL----ET-GKPVVLDEAYAEFSGKS------LIG-LIDEYPNLILLRTFSKAF 206 (337)
T ss_pred cCCCEEEEeCCCCCCCCCCCHHHHHHHH----hc-CCEEEEECchhhhcccc------hHH-HHhhCCCEEEEecchHhh
Confidence 34556666 9999999999888876 36 88999999999997321 111 224567899999999999
Q ss_pred ccCCC
Q psy207 105 GLYSR 109 (109)
Q Consensus 105 glyg~ 109 (109)
|++|+
T Consensus 207 ~l~Gl 211 (337)
T PRK03967 207 GLAGI 211 (337)
T ss_pred cchhh
Confidence 99984
No 89
>PRK06836 aspartate aminotransferase; Provisional
Probab=99.10 E-value=1.8e-10 Score=90.65 Aligned_cols=75 Identities=23% Similarity=0.314 Sum_probs=59.4
Q ss_pred CCCCeeee----ccCCCCCCHHHHHHHHHHHHh------CCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEe
Q psy207 29 PHPKKVNL----SVGGCDPTEDQWKQLAQLFKE------RPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQ 98 (109)
Q Consensus 29 ~~~~kv~L----~~~~~~lt~eqw~~i~~~~~~------~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~ 98 (109)
..++.|.+ ||||..++.++|++|++++++ + ++++|.|++|++|..+. .....+ .+...++++++
T Consensus 167 ~~~~~v~~~~p~NPtG~~~~~~~~~~l~~la~~~~~~~~~-~~~ii~De~y~~~~~~~--~~~~~~---~~~~~~~i~~~ 240 (394)
T PRK06836 167 PKTKAVIINSPNNPTGVVYSEETLKALAALLEEKSKEYGR-PIYLISDEPYREIVYDG--AEVPYI---FKYYDNSIVVY 240 (394)
T ss_pred cCceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHhhhccCC-CeEEEEeccccccccCC--CCCCCh---HHccCcEEEEe
Confidence 34566666 999999999999999999998 7 89999999999997652 111111 12345899999
Q ss_pred chhhhhccCCC
Q psy207 99 SFAKNFGLYSR 109 (109)
Q Consensus 99 SfSK~fglyg~ 109 (109)
||||+||+.|+
T Consensus 241 S~SK~~~~pGl 251 (394)
T PRK06836 241 SFSKSLSLPGE 251 (394)
T ss_pred cchhhccCcce
Confidence 99999999884
No 90
>PRK06107 aspartate aminotransferase; Provisional
Probab=99.10 E-value=1.8e-10 Score=90.90 Aligned_cols=78 Identities=15% Similarity=0.201 Sum_probs=58.9
Q ss_pred CCCeeee----ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhH-HhCCcEEEEechhhhh
Q psy207 30 HPKKVNL----SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFA-QEGFEFLCSQSFAKNF 104 (109)
Q Consensus 30 ~~~kv~L----~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~-~~~~~~~v~~SfSK~f 104 (109)
.++.|.+ ||||..++.++|++|++++++++++++|+|++|.+|.+++.. ...+..+. +...+++++.||||+|
T Consensus 166 ~~~~v~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~~iI~De~y~~l~~~~~~--~~~~~~~~~~~~~~vi~~~S~SK~~ 243 (402)
T PRK06107 166 RTRWLILNAPSNPTGAVYSRAELRALADVLLRHPHVLVLTDDIYDHIRFDDEP--TPHLLAAAPELRDRVLVTNGVSKTY 243 (402)
T ss_pred CceEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCCeEEEEehhccccccCCCC--CCCHHHhCcCccCCEEEEeccchhh
Confidence 4455655 999999999999999999999658999999999988654311 11122221 2245899999999999
Q ss_pred ccCCC
Q psy207 105 GLYSR 109 (109)
Q Consensus 105 glyg~ 109 (109)
|+.|.
T Consensus 244 ~~pGl 248 (402)
T PRK06107 244 AMTGW 248 (402)
T ss_pred cCccc
Confidence 99884
No 91
>PRK07392 threonine-phosphate decarboxylase; Validated
Probab=99.08 E-value=3.2e-10 Score=88.13 Aligned_cols=65 Identities=17% Similarity=0.175 Sum_probs=48.4
Q ss_pred ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhhccCCC
Q psy207 37 SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNFGLYSR 109 (109)
Q Consensus 37 ~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~fglyg~ 109 (109)
||||..++++++.++++ ++ + ++|+||+|.+|..+.. ....+..+ +...++++++||||.|||.|+
T Consensus 159 NPTG~~~~~~~l~~l~~---~~-~-~~IiDE~y~~~~~~~~--~~s~~~~~-~~~~~vi~i~S~SK~~~l~Gl 223 (360)
T PRK07392 159 NPTGKLWSREAILPLLE---QF-A-LVVVDEAFMDFLPPDA--EQSLIPCL-AEYPNLIILRSLTKFYSLPGL 223 (360)
T ss_pred CCCCCCcCHHHHHHHHH---HC-C-EEEEECchhhhccCcc--ccchHHHh-hcCCCEEEEEechhhhcCCch
Confidence 99999999998877764 56 6 4666999999986531 11122222 455789999999999999985
No 92
>PRK03321 putative aminotransferase; Provisional
Probab=99.08 E-value=1.9e-10 Score=88.77 Aligned_cols=76 Identities=16% Similarity=0.281 Sum_probs=58.6
Q ss_pred CCCCeeee----ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhh
Q psy207 29 PHPKKVNL----SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNF 104 (109)
Q Consensus 29 ~~~~kv~L----~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~f 104 (109)
..++.|.+ ||||..++.++|.++++.. ++ ++++++|++|++|..++.... .+..+ +...++++++||||+|
T Consensus 144 ~~~~~v~l~~p~NPtG~~~~~~~l~~l~~~~-~~-~~~ii~De~y~~~~~~~~~~~--~~~~~-~~~~~vi~~~S~SK~~ 218 (352)
T PRK03321 144 DRTRLIFVCNPNNPTGTVVTPAELARFLDAV-PA-DVLVVLDEAYVEYVRDDDVPD--GLELV-RDHPNVVVLRTFSKAY 218 (352)
T ss_pred cCCCEEEEeCCCCCcCCCcCHHHHHHHHHhC-CC-CeEEEEechHHHhccCcCCCc--HHHHH-hhCCCEEEEecchHHh
Confidence 35566776 9999999999999999864 46 889999999999987631112 23323 3457899999999999
Q ss_pred ccCCC
Q psy207 105 GLYSR 109 (109)
Q Consensus 105 glyg~ 109 (109)
|+.|.
T Consensus 219 g~~Gl 223 (352)
T PRK03321 219 GLAGL 223 (352)
T ss_pred hhHHH
Confidence 99873
No 93
>PRK05764 aspartate aminotransferase; Provisional
Probab=99.06 E-value=2.9e-10 Score=88.79 Aligned_cols=77 Identities=13% Similarity=0.232 Sum_probs=59.6
Q ss_pred CCCeeee----ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHh-HHhCCcEEEEechhhhh
Q psy207 30 HPKKVNL----SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYF-AQEGFEFLCSQSFAKNF 104 (109)
Q Consensus 30 ~~~kv~L----~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~-~~~~~~~~v~~SfSK~f 104 (109)
..+.|.+ ||||..++.+++++|+++++++ ++++++|++|.+|..+.. ....+..+ .+...+++++.||||.+
T Consensus 164 ~~~~v~~~~p~NPtG~~~~~~~~~~l~~~a~~~-~~~ii~De~y~~~~~~~~--~~~~~~~~~~~~~~~~i~~~s~SK~~ 240 (393)
T PRK05764 164 KTKALILNSPSNPTGAVYSPEELEAIADVAVEH-DIWVLSDEIYEKLVYDGA--EFTSIASLSPELRDRTITVNGFSKAY 240 (393)
T ss_pred cceEEEEECCCCCCCcccCHHHHHHHHHHHHHC-CcEEEEeccccceeeCCC--CcccHHHcCCCCcCCEEEEecCcccc
Confidence 4455555 8999999999999999999999 999999999999986421 11122222 23456899999999999
Q ss_pred ccCCC
Q psy207 105 GLYSR 109 (109)
Q Consensus 105 glyg~ 109 (109)
|+.|+
T Consensus 241 ~~~G~ 245 (393)
T PRK05764 241 AMTGW 245 (393)
T ss_pred cCccc
Confidence 99884
No 94
>PRK06225 aspartate aminotransferase; Provisional
Probab=99.02 E-value=6.1e-10 Score=86.97 Aligned_cols=72 Identities=24% Similarity=0.385 Sum_probs=57.5
Q ss_pred CCCeeee----ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhhc
Q psy207 30 HPKKVNL----SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNFG 105 (109)
Q Consensus 30 ~~~kv~L----~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~fg 105 (109)
.++.|.+ ||||..++.++|++|+++++++ ++++|+|++|.+|..+.. .+..+ ...+++++.||||+||
T Consensus 157 ~~~~v~l~~p~NptG~~~~~~~~~~i~~~a~~~-~~~ii~De~y~~~~~~~~-----~~~~~--~~~~~i~~~s~SK~~g 228 (380)
T PRK06225 157 NTRLIYLIDPLNPLGSSYTEEEIKEFAEIARDN-DAFLLHDCTYRDFAREHT-----LAAEY--APEHTVTSYSFSKIFG 228 (380)
T ss_pred CceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHC-CcEEEEehhHHHHhccCC-----chhhc--CCCCEEEEeechhhcC
Confidence 4556555 7999999999999999999999 999999999999876531 11111 2367899999999999
Q ss_pred cCCC
Q psy207 106 LYSR 109 (109)
Q Consensus 106 lyg~ 109 (109)
+.|+
T Consensus 229 ~~G~ 232 (380)
T PRK06225 229 MAGL 232 (380)
T ss_pred Cccc
Confidence 9874
No 95
>PRK02731 histidinol-phosphate aminotransferase; Validated
Probab=99.02 E-value=6.1e-10 Score=86.27 Aligned_cols=76 Identities=16% Similarity=0.274 Sum_probs=58.5
Q ss_pred CCCCeeee----ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhh
Q psy207 29 PHPKKVNL----SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNF 104 (109)
Q Consensus 29 ~~~~kv~L----~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~f 104 (109)
..++.|.+ ||||..++.++++++++.++ + ++++++|++|.++..++.... .+..+ +...+++++.||||+|
T Consensus 153 ~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~-~-~~~li~De~y~~~~~~~~~~~--~~~~~-~~~~~~i~~~S~SK~~ 227 (367)
T PRK02731 153 PRTRLVFIANPNNPTGTYLPAEEVERFLAGVP-P-DVLVVLDEAYAEYVRRKDYED--GLELV-AKFPNVVVTRTFSKAY 227 (367)
T ss_pred CCCcEEEEeCCCCCCCcCCCHHHHHHHHHhCC-C-CcEEEEECcHHHhccCcCccc--HHHHH-hhcCCEEEEeeehHhh
Confidence 34556666 99999999999999999763 6 889999999999987532111 23322 3567899999999999
Q ss_pred ccCCC
Q psy207 105 GLYSR 109 (109)
Q Consensus 105 glyg~ 109 (109)
|+.|+
T Consensus 228 g~~G~ 232 (367)
T PRK02731 228 GLAGL 232 (367)
T ss_pred cCccc
Confidence 99873
No 96
>PRK03317 histidinol-phosphate aminotransferase; Provisional
Probab=99.01 E-value=9.1e-10 Score=85.66 Aligned_cols=72 Identities=21% Similarity=0.261 Sum_probs=54.8
Q ss_pred CCCeeee----ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhhc
Q psy207 30 HPKKVNL----SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNFG 105 (109)
Q Consensus 30 ~~~kv~L----~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~fg 105 (109)
.++.|.+ ||||..++.+++++|++.+ +.++|+||+|.+|..+.. .. ....+ +...++++++||||+||
T Consensus 160 ~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~----~~~lI~DE~y~~~~~~~~-~~--~~~~~-~~~~~~i~~~SfSK~~g 231 (368)
T PRK03317 160 RPDVVFLTSPNNPTGTALPLDDVEAILDAA----PGIVVVDEAYAEFRRSGT-PS--ALTLL-PEYPRLVVSRTMSKAFA 231 (368)
T ss_pred CCCEEEEeCCCCCCCCCCCHHHHHHHHHHC----CceEEEeCCchhhcccCC-cC--HHHHH-HhCCCEEEEEechhhhc
Confidence 3455555 9999999999999999866 579999999999975321 11 22222 34568999999999999
Q ss_pred cCCC
Q psy207 106 LYSR 109 (109)
Q Consensus 106 lyg~ 109 (109)
+.|+
T Consensus 232 ~~Gl 235 (368)
T PRK03317 232 FAGG 235 (368)
T ss_pred cchh
Confidence 9884
No 97
>PRK05387 histidinol-phosphate aminotransferase; Provisional
Probab=99.00 E-value=9.1e-10 Score=84.75 Aligned_cols=69 Identities=17% Similarity=0.191 Sum_probs=53.3
Q ss_pred CCeeee----ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhhcc
Q psy207 31 PKKVNL----SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNFGL 106 (109)
Q Consensus 31 ~~kv~L----~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~fgl 106 (109)
.+.|.+ ||||..++.++|++|++.. + ++++++|++|.+|... . ... +.+...++++++||||+||+
T Consensus 145 ~~~v~~~~P~NPtG~~~~~~~~~~l~~~~--~-~~~livDe~y~~~~~~----~--~~~-~~~~~~~~i~~~S~SK~~~~ 214 (353)
T PRK05387 145 NGGIIFPNPNAPTGIALPLAEIERILAAN--P-DSVVVIDEAYVDFGGE----S--AIP-LIDRYPNLLVVQTFSKSRSL 214 (353)
T ss_pred CCEEEEeCCCCCCCCCCCHHHHHHHHHhC--C-CcEEEEeCcccccCCc----c--hHH-HHhhCCCEEEEEehhHhhcc
Confidence 345555 9999999999999999843 4 8899999999988522 1 122 22445789999999999999
Q ss_pred CCC
Q psy207 107 YSR 109 (109)
Q Consensus 107 yg~ 109 (109)
+|+
T Consensus 215 ~Gl 217 (353)
T PRK05387 215 AGL 217 (353)
T ss_pred hhh
Confidence 884
No 98
>PRK09440 avtA valine--pyruvate transaminase; Provisional
Probab=99.00 E-value=9.7e-10 Score=86.78 Aligned_cols=74 Identities=16% Similarity=0.170 Sum_probs=55.2
Q ss_pred CCCCeeee----ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhh
Q psy207 29 PHPKKVNL----SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNF 104 (109)
Q Consensus 29 ~~~~kv~L----~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~f 104 (109)
..++.+.+ ||||..++.+++++|+++++++ ++++|.|++|..+..+ .. ..........++++++||||.
T Consensus 178 ~~~~~i~l~~P~NPTG~~~s~~~~~~l~~~a~~~-~~~iI~De~Y~~~~~~-~~----~~~~~~~~~~~vI~~~SfSK~- 250 (416)
T PRK09440 178 EDTGAICVSRPTNPTGNVLTDEELEKLDALARQH-NIPLLIDNAYGPPFPG-II----FSEATPLWNPNIILCMSLSKL- 250 (416)
T ss_pred CCceEEEEecCCCCCCccCCHHHHHHHHHHHHHc-CCcEEEeCCccccCCC-cc----hhhcCccccCCeEEEeccccc-
Confidence 34455555 9999999999999999999999 9999999999765432 10 000000124689999999995
Q ss_pred ccCCC
Q psy207 105 GLYSR 109 (109)
Q Consensus 105 glyg~ 109 (109)
++.|+
T Consensus 251 ~~pGl 255 (416)
T PRK09440 251 GLPGV 255 (416)
T ss_pred CCCcc
Confidence 99885
No 99
>PRK04870 histidinol-phosphate aminotransferase; Provisional
Probab=98.99 E-value=8.6e-10 Score=85.35 Aligned_cols=69 Identities=22% Similarity=0.237 Sum_probs=53.1
Q ss_pred CCCCeeee----ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhh
Q psy207 29 PHPKKVNL----SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNF 104 (109)
Q Consensus 29 ~~~~kv~L----~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~f 104 (109)
..++.|.| ||||..++.++|++|++.+ +.++|+|++|++|..+.. ...+ ....++++++|||| |
T Consensus 152 ~~~~~v~l~~p~NPtG~~~~~~~~~~i~~~~----~~~ii~De~y~~~~~~~~------~~~~-~~~~~vi~~~S~SK-~ 219 (356)
T PRK04870 152 HRPALVFLAYPNNPTGNLFDDADVERIIEAA----PGLVVVDEAYQPFAGDSW------LPRL-ARFPNLLVMRTVSK-L 219 (356)
T ss_pred CCCCEEEEcCCCCCCCCCCCHHHHHHHHHHC----CCEEEEECCchhhcCcch------HHHH-hhCCCEEEEecchh-h
Confidence 34566666 9999999999999999976 457889999999975321 1112 34568999999999 9
Q ss_pred ccCCC
Q psy207 105 GLYSR 109 (109)
Q Consensus 105 glyg~ 109 (109)
|+.|+
T Consensus 220 ~~~Gl 224 (356)
T PRK04870 220 GLAGL 224 (356)
T ss_pred hhHHH
Confidence 99873
No 100
>PRK14807 histidinol-phosphate aminotransferase; Provisional
Probab=98.97 E-value=2.1e-09 Score=83.32 Aligned_cols=69 Identities=25% Similarity=0.324 Sum_probs=52.4
Q ss_pred CCCeeee----ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhhc
Q psy207 30 HPKKVNL----SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNFG 105 (109)
Q Consensus 30 ~~~kv~L----~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~fg 105 (109)
.++.|.| ||||..++.++++++++ ++ +.++|+|++|.+|. +. .. ... .+...++++++||||.||
T Consensus 148 ~~k~v~l~~p~NPtG~~~~~~~l~~l~~---~~-~~~~ivDe~y~~~~-~~---~~--~~~-~~~~~~vi~~~S~SK~~~ 216 (351)
T PRK14807 148 QPKLVFLCNPNNPTGSVIEREDIIKIIE---KS-RGIVVVDEAYFEFY-GN---TI--VDV-INEFENLIVLRTLSKAFG 216 (351)
T ss_pred CCCEEEEeCCCCCCCCCCCHHHHHHHHH---hC-CCEEEEeCcchhhc-cc---ch--HHH-hhhCCCEEEEecchHhcc
Confidence 5566666 99999999999998876 44 55788999999985 42 11 111 234568999999999999
Q ss_pred cCCC
Q psy207 106 LYSR 109 (109)
Q Consensus 106 lyg~ 109 (109)
+.|+
T Consensus 217 ~~Gl 220 (351)
T PRK14807 217 LAGL 220 (351)
T ss_pred cchh
Confidence 9984
No 101
>PRK07908 hypothetical protein; Provisional
Probab=98.93 E-value=1.6e-09 Score=83.79 Aligned_cols=69 Identities=14% Similarity=0.125 Sum_probs=50.4
Q ss_pred CCCeeee----ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhhc
Q psy207 30 HPKKVNL----SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNFG 105 (109)
Q Consensus 30 ~~~kv~L----~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~fg 105 (109)
.++.+.+ ||||..++.++|.++++ + +.++|+|++|.+|..+.. . .+... ...++++++||||.||
T Consensus 139 ~~~~i~l~np~NPTG~~~~~~~l~~l~~----~-~~~iIvDe~y~~~~~~~~-~---~l~~~--~~~~~i~i~S~SK~~~ 207 (349)
T PRK07908 139 DADLVVIGNPTNPTSVLHPAEQLLALRR----P-GRILVVDEAFADAVPGEP-E---SLAGD--DLPGVLVLRSLTKTWS 207 (349)
T ss_pred CCCEEEEcCCCCCCCCCcCHHHHHHHHh----c-CCEEEEECcchhhccCCc-c---ccccc--cCCCEEEEeecccccC
Confidence 4555556 99999999998877753 4 668888999999865531 1 22111 2347999999999999
Q ss_pred cCCC
Q psy207 106 LYSR 109 (109)
Q Consensus 106 lyg~ 109 (109)
+.|+
T Consensus 208 l~Gl 211 (349)
T PRK07908 208 LAGL 211 (349)
T ss_pred Cccc
Confidence 9884
No 102
>PLN02672 methionine S-methyltransferase
Probab=98.91 E-value=3.6e-09 Score=93.45 Aligned_cols=72 Identities=7% Similarity=0.128 Sum_probs=54.8
Q ss_pred ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHH----HhHHh--CCcEEEEechhhhhccCCC
Q psy207 37 SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVR----YFAQE--GFEFLCSQSFAKNFGLYSR 109 (109)
Q Consensus 37 ~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~----~~~~~--~~~~~v~~SfSK~fglyg~ 109 (109)
||||..++++++++|+++++++ ++++|.||+|.++.++.-....+.+. .+... ..++++++||||.|++.|+
T Consensus 840 NPTG~v~S~eeLe~Llela~k~-di~VIsDEaYsdL~Fd~~~~s~~sl~s~l~~~~~~sks~nVIvL~SfSKkf~lpGL 917 (1082)
T PLN02672 840 NPTGLLYSNSEIEEILSVCAKY-GARVIIDTSFSGLEYDTSGWGGWDLKSILSRLKSSNPSFAVALLGGLSTELLSGGH 917 (1082)
T ss_pred CCcCccCCHHHHHHHHHHHHHc-CCEEEEeCCCCccccCCCCCcccchhhHHHHhccccCCceEEEEeCcHHhhccHHH
Confidence 7999999999999999999999 99999999999888752110011111 11111 2479999999999999984
No 103
>PRK00950 histidinol-phosphate aminotransferase; Validated
Probab=98.89 E-value=5.3e-09 Score=80.73 Aligned_cols=69 Identities=28% Similarity=0.356 Sum_probs=53.1
Q ss_pred CCCeeee----ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhhc
Q psy207 30 HPKKVNL----SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNFG 105 (109)
Q Consensus 30 ~~~kv~L----~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~fg 105 (109)
.++.|.+ ||||..++.++++++++ ++ ++++++|++|.+|..++ . ..+.....++++++||||+||
T Consensus 158 ~~~~v~~~~p~nptG~~~~~~~l~~l~~---~~-~~~li~De~y~~~~~~~----~---~~~~~~~~~vi~~~S~SK~~g 226 (361)
T PRK00950 158 KTKVIFLCTPNNPTGNLIPEEDIRKILE---ST-DALVFVDEAYVEFAEYD----Y---TPLALEYDNLIIGRTFSKVFG 226 (361)
T ss_pred CCCEEEEeCCCCCCCCCcCHHHHHHHHH---HC-CcEEEEECchhhhCccc----h---HHHHHhcCCEEEEEeehHhhc
Confidence 4555666 99999999999888865 56 88999999999997322 1 112234468999999999999
Q ss_pred cCCC
Q psy207 106 LYSR 109 (109)
Q Consensus 106 lyg~ 109 (109)
+.|+
T Consensus 227 ~~Gl 230 (361)
T PRK00950 227 LAGL 230 (361)
T ss_pred Cchh
Confidence 9873
No 104
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=98.83 E-value=6.5e-09 Score=82.86 Aligned_cols=85 Identities=16% Similarity=0.103 Sum_probs=63.1
Q ss_pred hhhhcCCCCCCeeee----ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhh-hHHHHHHhHHhCCcEEE
Q psy207 22 NKAYLDDPHPKKVNL----SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLER-DAFAVRYFAQEGFEFLC 96 (109)
Q Consensus 22 ~~~~~~d~~~~kv~L----~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~-d~~~l~~~~~~~~~~~v 96 (109)
.++-..+...+...| ||||...|.|++.+|++++++| ++.+|+||+.+++..+.-.. ....+. .....+.+.
T Consensus 150 LE~~~~~~~vkl~iLCnPHNP~Grvwt~eeL~~i~elc~kh-~v~VISDEIHaDlv~~g~~h~~~a~ls--~~~a~~~it 226 (388)
T COG1168 150 LEKAFVDERVKLFILCNPHNPTGRVWTKEELRKIAELCLRH-GVRVISDEIHADLVLGGHKHIPFASLS--ERFADNSIT 226 (388)
T ss_pred HHHHHhcCCccEEEEeCCCCCCCccccHHHHHHHHHHHHHc-CCEEEeecccccccccCCCccchhhcC--hhhhcceEE
Confidence 343344444333333 9999999999999999999999 99999999999999874111 111221 123478999
Q ss_pred EechhhhhccCCC
Q psy207 97 SQSFAKNFGLYSR 109 (109)
Q Consensus 97 ~~SfSK~fglyg~ 109 (109)
|-|-||+|.+.|+
T Consensus 227 ~~saSKtFNlaGL 239 (388)
T COG1168 227 LTSASKTFNLAGL 239 (388)
T ss_pred Eeeccccccchhh
Confidence 9999999999984
No 105
>TIGR01141 hisC histidinol-phosphate aminotransferase. Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme.
Probab=98.80 E-value=1.2e-08 Score=78.38 Aligned_cols=73 Identities=22% Similarity=0.310 Sum_probs=56.3
Q ss_pred CCCCCeeee----ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhh
Q psy207 28 DPHPKKVNL----SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKN 103 (109)
Q Consensus 28 d~~~~kv~L----~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~ 103 (109)
+..++.|.+ ||||..++.++|+++++..+ + +.++++|++|.+|..+. + ....+ ....+++++.||||+
T Consensus 140 ~~~~~~v~l~~p~NptG~~~~~~~~~~l~~~~~-~-~~~ii~D~~y~~~~~~~---~--~~~~~-~~~~~~i~~~S~sK~ 211 (346)
T TIGR01141 140 DDKPKLVFLCSPNNPTGNLLSRSDIEAVLERTP-E-DALVVVDEAYGEFSGEP---S--TLPLL-AEYPNLIVLRTLSKA 211 (346)
T ss_pred CCCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCC-C-CcEEEEECchhhhcCCc---c--HHHHH-hhCCCEEEEehhhHh
Confidence 344556666 99999999999999999886 6 88999999999887542 1 11222 234578999999999
Q ss_pred hccCC
Q psy207 104 FGLYS 108 (109)
Q Consensus 104 fglyg 108 (109)
||+.|
T Consensus 212 ~g~~G 216 (346)
T TIGR01141 212 FGLAG 216 (346)
T ss_pred hhchh
Confidence 99877
No 106
>cd00609 AAT_like Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi
Probab=98.71 E-value=3.1e-08 Score=74.59 Aligned_cols=78 Identities=23% Similarity=0.334 Sum_probs=59.9
Q ss_pred CCCCCCeeee----ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhh
Q psy207 27 DDPHPKKVNL----SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAK 102 (109)
Q Consensus 27 ~d~~~~kv~L----~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK 102 (109)
.++.++.|.+ ||||..++.+++++|+++++++ ++++++|+||.++..+....+ ...........++..|+||
T Consensus 129 ~~~~~~~v~i~~~~~~tG~~~~~~~l~~l~~~~~~~-~~~~ivD~a~~~~~~~~~~~~---~~~~~~~~~~~~~~~s~~K 204 (350)
T cd00609 129 KTPKTKLLYLNNPNNPTGAVLSEEELEELAELAKKH-GILIISDEAYAELVYDGEPPP---ALALLDAYERVIVLRSFSK 204 (350)
T ss_pred cCccceEEEEECCCCCCCcccCHHHHHHHHHHHHhC-CeEEEEecchhhceeCCcccc---cccCcCccCcEEEEeeccc
Confidence 3455666666 8999999999999999999999 999999999999887632211 1111234557899999999
Q ss_pred hhccCC
Q psy207 103 NFGLYS 108 (109)
Q Consensus 103 ~fglyg 108 (109)
++|+.|
T Consensus 205 ~~~~~g 210 (350)
T cd00609 205 TFGLPG 210 (350)
T ss_pred ccCCcc
Confidence 998765
No 107
>KOG0256|consensus
Probab=98.30 E-value=2.2e-06 Score=69.40 Aligned_cols=87 Identities=21% Similarity=0.177 Sum_probs=63.1
Q ss_pred hhhhcCCCCCCeeee----ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhh-hHHHHHHhHH-hCCcEE
Q psy207 22 NKAYLDDPHPKKVNL----SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLER-DAFAVRYFAQ-EGFEFL 95 (109)
Q Consensus 22 ~~~~~~d~~~~kv~L----~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~-d~~~l~~~~~-~~~~~~ 95 (109)
+++-+.+..-+-|.+ ||-|+.+++|++..+++++++| ++.+|+||+|.+=..++.+- +...++.-.+ ...++-
T Consensus 218 ~~A~~~~~kVkGvlitNPsNPLG~~~~~e~L~~ll~Fa~~k-niHvI~DEIya~sVF~~~~F~Sv~ev~~~~~~~~~rvH 296 (471)
T KOG0256|consen 218 NQARKLGLKVKGVLITNPSNPLGTTLSPEELISLLNFASRK-NIHVISDEIYAGSVFDKSEFRSVLEVRKDPHLDPDRVH 296 (471)
T ss_pred HHHHHhCCceeEEEEeCCCCCCCCccCHHHHHHHHHHHhhc-ceEEEeehhhcccccCccCceEHHHHhhccccCCCcEE
Confidence 333334444444444 8999999999999999999999 99999999999988774311 1122222111 346889
Q ss_pred EEechhhhhccCCC
Q psy207 96 CSQSFAKNFGLYSR 109 (109)
Q Consensus 96 v~~SfSK~fglyg~ 109 (109)
+..|.||-|||-|.
T Consensus 297 ivyslSKD~GlpGf 310 (471)
T KOG0256|consen 297 IVYSLSKDFGLPGF 310 (471)
T ss_pred EEEEeccccCCCce
Confidence 99999999999873
No 108
>PRK10534 L-threonine aldolase; Provisional
Probab=98.27 E-value=1.2e-06 Score=66.97 Aligned_cols=71 Identities=20% Similarity=0.127 Sum_probs=47.5
Q ss_pred CCeeee--ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhhccC
Q psy207 31 PKKVNL--SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNFGLY 107 (109)
Q Consensus 31 ~~kv~L--~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~fgly 107 (109)
++.|.| +++|..++.+++++|+++++++ ++++++||||.-+..+...... ..+....+.++ .||||.||+.
T Consensus 130 ~~lv~l~np~~G~v~~~~~l~~i~~~~~~~-~~~lvvDEA~~~~~~~~~~~~~---~~~~~~~~~~~--~s~SK~~~~~ 202 (333)
T PRK10534 130 TRLLSLENTHNGKVLPREYLKQAWEFTRER-NLALHVDGARIFNAVVAYGCEL---KEITQYCDSFT--ICLSKGLGTP 202 (333)
T ss_pred ceEEEEecCCCCeecCHHHHHHHHHHHHHc-CCeEEeeHHHHHHHHHHcCCCH---HHHHhcCCEEE--EEeEcCCCCc
Confidence 455666 7899999999999999999998 9999999998722111000111 11222223333 4899999973
No 109
>KOG0259|consensus
Probab=98.26 E-value=1.5e-06 Score=69.84 Aligned_cols=82 Identities=18% Similarity=0.211 Sum_probs=66.3
Q ss_pred hhhcCCCCCCeeee----ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEe
Q psy207 23 KAYLDDPHPKKVNL----SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQ 98 (109)
Q Consensus 23 ~~~~~d~~~~kv~L----~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~ 98 (109)
-...+|.++..+.+ ||+|..+|.+.+++|++++++. ++.+|.||.|..+.+|+ .-...+..|. .-..++.+.
T Consensus 192 veal~DENT~AivviNP~NPcGnVys~~HL~kiae~A~kl-gi~vIaDEVY~~~vfg~--~pfvpmg~fs-siVPVitlg 267 (447)
T KOG0259|consen 192 VEALADENTVAIVVINPNNPCGNVYSEDHLKKIAETAKKL-GIMVIADEVYGHTVFGD--KPFVPMGKFS-SIVPVITLG 267 (447)
T ss_pred HHHhhccCeeEEEEeCCCCCCcccccHHHHHHHHHHHHHh-CCeEEehhhcceeecCC--CCccchhhcc-ccCceEeec
Confidence 34567777776666 9999999999999999999999 99999999999999996 3334455554 456899999
Q ss_pred chhhhhccCC
Q psy207 99 SFAKNFGLYS 108 (109)
Q Consensus 99 SfSK~fglyg 108 (109)
|.||-|=.-|
T Consensus 268 gisKrW~VPG 277 (447)
T KOG0259|consen 268 GISKRWIVPG 277 (447)
T ss_pred ccccccccCC
Confidence 9999875433
No 110
>PRK07505 hypothetical protein; Provisional
Probab=98.26 E-value=3e-06 Score=66.92 Aligned_cols=74 Identities=18% Similarity=0.156 Sum_probs=48.8
Q ss_pred CCCeeee----ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHH-hCCcEEEEechhhhh
Q psy207 30 HPKKVNL----SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQ-EGFEFLCSQSFAKNF 104 (109)
Q Consensus 30 ~~~kv~L----~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~-~~~~~~v~~SfSK~f 104 (109)
.++.+.| ||+|...+ +++|.++++++ ++++|+||+|.....|.... .+....+.. ..+++++++||||.|
T Consensus 179 ~~~~~vl~~p~~~~G~~~~---~~~i~~l~~~~-~~~li~DEa~~~~~~g~~g~-~~~~~~~~~~~~d~~i~~~s~sK~~ 253 (402)
T PRK07505 179 NKTVAYVADGVYSMGGIAP---VKELLRLQEKY-GLFLYIDDAHGLSIYGKNGE-GYVRSELDYRLNERTIIAASLGKAF 253 (402)
T ss_pred CCCEEEEEecccccCCcCC---HHHHHHHHHHc-CCEEEEECcccccCcCCCCC-chHHHHcCCCCCCCeEEEEechhhh
Confidence 3455555 89998877 56677778889 99999999973222221101 112222322 456799999999999
Q ss_pred ccCC
Q psy207 105 GLYS 108 (109)
Q Consensus 105 glyg 108 (109)
|+.|
T Consensus 254 ~~~G 257 (402)
T PRK07505 254 GASG 257 (402)
T ss_pred hccC
Confidence 9865
No 111
>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]
Probab=98.24 E-value=4.3e-06 Score=68.02 Aligned_cols=72 Identities=17% Similarity=0.233 Sum_probs=58.7
Q ss_pred CCCeeee-----ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhh
Q psy207 30 HPKKVNL-----SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNF 104 (109)
Q Consensus 30 ~~~kv~L-----~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~f 104 (109)
.+|.+.+ ||||..++.+.-++|+++++++ ++++|=|..|..|.++..+.. .+..+ ....+++.+.||||+.
T Consensus 226 ~~k~~y~~P~~qNPtG~tms~~rR~~Ll~lA~~~-~~~IIEDD~y~el~~~~~p~~--~l~~l-d~~~rViy~gSFSK~l 301 (459)
T COG1167 226 KPKAVYVTPTFQNPTGVTMSLERRKALLALAEKY-DVLIIEDDYYGELRYDGPPPP--PLKAL-DAPGRVIYLGSFSKTL 301 (459)
T ss_pred CCcEEEECCCCCCCCCCccCHHHHHHHHHHHHHc-CCeEEeeCcchhhhcCCCCCC--ChHhh-CCCCCEEEEeeehhhc
Confidence 5677777 9999999999999999999888 999999999999998742211 22222 3567999999999986
Q ss_pred c
Q psy207 105 G 105 (109)
Q Consensus 105 g 105 (109)
.
T Consensus 302 ~ 302 (459)
T COG1167 302 A 302 (459)
T ss_pred c
Confidence 3
No 112
>cd06502 TA_like Low-specificity threonine aldolase (TA). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.
Probab=98.21 E-value=2.2e-06 Score=65.16 Aligned_cols=72 Identities=25% Similarity=0.266 Sum_probs=48.3
Q ss_pred CCCeeee----ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhhc
Q psy207 30 HPKKVNL----SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNFG 105 (109)
Q Consensus 30 ~~~kv~L----~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~fg 105 (109)
.++.|.+ || |..++.+++++|+++++++ ++++++|+||..+..+..... +... ..+..+ ++.|+||.||
T Consensus 127 ~~~~v~l~~p~n~-g~~~~~~~l~~i~~~~~~~-~~~livDea~~~~~~~~~~~~---~~~~-~~~~d~-~~~s~sK~~~ 199 (338)
T cd06502 127 PPSLVSLENTTEG-GTVYPLDELKAISALAKEN-GLPLHLDGARLANAAAALGVA---LKTY-KSGVDS-VSFCLSKGGG 199 (338)
T ss_pred cceEEEEEeecCC-ccccCHHHHHHHHHHHHHc-CCeEeechHHHHHHHHhcCCC---HHHH-HhcCCE-EEEeccccCC
Confidence 4556666 55 5566999999999999999 999999999865431100011 1111 124454 5779999999
Q ss_pred cCC
Q psy207 106 LYS 108 (109)
Q Consensus 106 lyg 108 (109)
+.|
T Consensus 200 ~~~ 202 (338)
T cd06502 200 APV 202 (338)
T ss_pred Ccc
Confidence 865
No 113
>PRK07049 methionine gamma-lyase; Validated
Probab=98.18 E-value=4e-06 Score=67.62 Aligned_cols=68 Identities=12% Similarity=0.086 Sum_probs=50.9
Q ss_pred CCCCeeee----ccCCCCCCHHHHHHHHHHHHh---CCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechh
Q psy207 29 PHPKKVNL----SVGGCDPTEDQWKQLAQLFKE---RPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFA 101 (109)
Q Consensus 29 ~~~~kv~L----~~~~~~lt~eqw~~i~~~~~~---~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfS 101 (109)
.+++.|.| ||||..++.+++.+|++.+++ + ++++++|++|.++..-. .+ +.+ ..+|++|||
T Consensus 173 ~~tklv~lesP~NPtg~v~d~~~l~~la~~~~~~~~~-~~~vvvDety~~~~~~~------pl----~~g-~divv~S~S 240 (427)
T PRK07049 173 GRVSLILIETPANPTNSLVDVAAVRRVADAIEARQGH-RPIIACDNTLLGPVFQK------PL----EHG-ADLSVYSLT 240 (427)
T ss_pred CCceEEEEECCCCCCCcccCHHHHHHHHHHhhhcccC-CCEEEEECCccccccCC------cc----ccC-CCEEEEcCc
Confidence 45667777 999999999999999998654 4 77999999998764221 22 123 357888999
Q ss_pred hhhc-cCC
Q psy207 102 KNFG-LYS 108 (109)
Q Consensus 102 K~fg-lyg 108 (109)
|+|| +.|
T Consensus 241 K~~gG~~g 248 (427)
T PRK07049 241 KYVGGHSD 248 (427)
T ss_pred eeecCCCC
Confidence 9999 444
No 114
>TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family. Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog.
Probab=98.18 E-value=4.6e-06 Score=65.47 Aligned_cols=68 Identities=16% Similarity=0.119 Sum_probs=46.7
Q ss_pred CCCeeee---ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhh
Q psy207 30 HPKKVNL---SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNF 104 (109)
Q Consensus 30 ~~~kv~L---~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~f 104 (109)
.++.|.+ +++|..++++++++|+++++++ +.++++||||..+..|...... .. ..+.++ ++.||||++
T Consensus 136 ~~~lIiitg~s~~G~v~~~~~L~~i~~la~~~-~~~livDEAy~~~~~~~~~~~~-~~----~~~~di-vv~s~SKal 206 (346)
T TIGR03576 136 GTSLVVITGSTMDLKVVSEEDLKRVIKQAKSK-EAIVLVDDASGARVRRLYGQPP-AL----DLGADL-VVTSTDKLM 206 (346)
T ss_pred CceEEEEECCCCCCcccCHHHHHHHHHHHHHc-CCEEEEECCccccccccCCCCC-HH----HcCCcE-EEeccchhc
Confidence 3455666 5555578899999999999999 9999999999877543211110 11 233454 456999965
No 115
>TIGR00858 bioF 8-amino-7-oxononanoate synthase. This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model.
Probab=98.11 E-value=5.5e-06 Score=63.14 Aligned_cols=66 Identities=20% Similarity=0.196 Sum_probs=43.1
Q ss_pred ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHh-HHhCCcEEEEechhhhhccCC
Q psy207 37 SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYF-AQEGFEFLCSQSFAKNFGLYS 108 (109)
Q Consensus 37 ~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~-~~~~~~~~v~~SfSK~fglyg 108 (109)
|++|.. +.+++|.++++++ ++++|+|++|..+..+..... .+..+ .....+++++.||||+||+.|
T Consensus 157 ~~~G~~---~~~~~i~~l~~~~-~~~li~De~~~~~~~~~~~~~--~~~~~~~~~~~~~i~i~s~sK~~~~~g 223 (360)
T TIGR00858 157 SMDGDI---APLPQLVALAERY-GAWLMVDDAHGTGVLGEDGRG--TLEHFGLKPEPVDIQVGTLSKALGSYG 223 (360)
T ss_pred cCCCCC---cCHHHHHHHHHHc-CcEEEEECcccccCcCCCCCc--hHHhcCCCccCCcEEEEechhhhhccC
Confidence 455544 3467788888899 999999999975543321011 11111 112356889999999999865
No 116
>PRK13392 5-aminolevulinate synthase; Provisional
Probab=98.11 E-value=6.3e-06 Score=65.17 Aligned_cols=71 Identities=17% Similarity=0.236 Sum_probs=46.2
Q ss_pred CCCeeee----ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccc-cccCCChhhhHHHHHHhHHhCCcE-EEEechhhh
Q psy207 30 HPKKVNL----SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQ-GFASGDLERDAFAVRYFAQEGFEF-LCSQSFAKN 103 (109)
Q Consensus 30 ~~~kv~L----~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~-gf~~g~~~~d~~~l~~~~~~~~~~-~v~~SfSK~ 103 (109)
.++.|.+ ||||...+ +++|.++++++ ++++++|+||. |+. |...... ... .....++ ++++||||+
T Consensus 178 ~t~~v~i~~~~n~tG~~~~---l~~i~~l~~~~-~~~livDea~~~g~~-g~~g~g~--~~~-~~~~~~~div~~tlsK~ 249 (410)
T PRK13392 178 RPKLIAFESVYSMDGDIAP---IEAICDLADRY-NALTYVDEVHAVGLY-GARGGGI--AER-DGLMDRIDMIQGTLAKA 249 (410)
T ss_pred CCEEEEEeCCCCCCccccc---HHHHHHHHHHc-CCEEEEECCccccCc-CCCCCch--hhh-ccCCCCCcEEEEEChHh
Confidence 3445555 88998877 67778888899 99999999998 542 2100111 111 1111122 788999999
Q ss_pred hccCC
Q psy207 104 FGLYS 108 (109)
Q Consensus 104 fglyg 108 (109)
||+.|
T Consensus 250 ~g~~G 254 (410)
T PRK13392 250 FGCLG 254 (410)
T ss_pred hhccc
Confidence 99876
No 117
>PRK05958 8-amino-7-oxononanoate synthase; Reviewed
Probab=98.06 E-value=1.6e-05 Score=61.41 Aligned_cols=66 Identities=15% Similarity=0.109 Sum_probs=43.2
Q ss_pred ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHH-hHHhCCcEEEEechhhhhccCC
Q psy207 37 SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRY-FAQEGFEFLCSQSFAKNFGLYS 108 (109)
Q Consensus 37 ~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~-~~~~~~~~~v~~SfSK~fglyg 108 (109)
|++|.. +.+++|+++++++ ++++++|++|..+..+..... .... -.....+++++.||||+||+.|
T Consensus 179 ~~~G~~---~~l~~i~~ia~~~-~~~li~De~~~~g~~~~~g~~--~~~~~~~~~~~~~i~~~s~sK~~~~~G 245 (385)
T PRK05958 179 SMDGDL---APLAELVALARRH-GAWLLVDEAHGTGVLGPQGRG--LAAEAGLAGEPDVILVGTLGKALGSSG 245 (385)
T ss_pred cCCCCc---CCHHHHHHHHHHh-CCEEEEECcccccccCCCCCc--hHHhhCCCCCCceEEEEechhhcccCC
Confidence 455543 4477888888899 999999999954322310011 1111 1123567899999999999865
No 118
>TIGR00707 argD acetylornithine and succinylornithine aminotransferases. Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097)
Probab=98.05 E-value=1.3e-05 Score=62.08 Aligned_cols=70 Identities=20% Similarity=0.367 Sum_probs=48.2
Q ss_pred CCCeeee----ccCCC-CCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhh
Q psy207 30 HPKKVNL----SVGGC-DPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNF 104 (109)
Q Consensus 30 ~~~kv~L----~~~~~-~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~f 104 (109)
.++.|.+ |+||. .++.++|++|.++++++ ++++++||+|.+|.... .......+ ...++++ ||||.+
T Consensus 170 ~~~~v~~~p~~~~~g~~~~~~~~l~~i~~l~~~~-~~~~i~De~~~~~~~~g---~~~~~~~~-~~~~d~~---t~sK~~ 241 (379)
T TIGR00707 170 ETAAVIVEPIQGEGGVNPASAEFLKALREICKDK-DALLIFDEVQTGIGRTG---KFFAYEHY-GIEPDII---TLAKGL 241 (379)
T ss_pred CeeEEEEEccccCCCCccCCHHHHHHHHHHHHHc-CCEEEEeccccCCCccc---hhhhHHhc-CCCCCEE---EEcccc
Confidence 3456666 45564 47999999999999999 99999999999986431 11111111 2334533 799999
Q ss_pred ccCC
Q psy207 105 GLYS 108 (109)
Q Consensus 105 glyg 108 (109)
| .|
T Consensus 242 ~-~G 244 (379)
T TIGR00707 242 G-GG 244 (379)
T ss_pred c-CC
Confidence 9 66
No 119
>PLN02242 methionine gamma-lyase
Probab=98.04 E-value=1.2e-05 Score=64.74 Aligned_cols=62 Identities=15% Similarity=0.130 Sum_probs=46.5
Q ss_pred CCeeee----ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhhcc
Q psy207 31 PKKVNL----SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNFGL 106 (109)
Q Consensus 31 ~~kv~L----~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~fgl 106 (109)
++.|.+ ||||... ++++|+++++++ ++++++|++|..+..+. . +.+ .-++++||||+||.
T Consensus 164 tklV~lesp~NPtG~v~---dl~~I~~la~~~-gi~livDea~~~~~~~~-------~----~~g-~divv~S~SK~l~g 227 (418)
T PLN02242 164 TKVLYFESISNPTLTVA---DIPELARIAHEK-GVTVVVDNTFAPMVLSP-------A----RLG-ADVVVHSISKFISG 227 (418)
T ss_pred CEEEEEecCCCCCCccc---CHHHHHHHHHHh-CCEEEEECCCCccCCCH-------H----HcC-CcEEEEeCccccCC
Confidence 566666 8888766 577888888899 99999999998766431 1 112 34778999999987
Q ss_pred CC
Q psy207 107 YS 108 (109)
Q Consensus 107 yg 108 (109)
.|
T Consensus 228 ~g 229 (418)
T PLN02242 228 GA 229 (418)
T ss_pred CC
Confidence 65
No 120
>PRK04073 rocD ornithine--oxo-acid transaminase; Provisional
Probab=98.03 E-value=1.4e-05 Score=63.09 Aligned_cols=64 Identities=17% Similarity=0.214 Sum_probs=46.1
Q ss_pred ccCCCCCCH-HHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhhccCC
Q psy207 37 SVGGCDPTE-DQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNFGLYS 108 (109)
Q Consensus 37 ~~~~~~lt~-eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~fglyg 108 (109)
||||..+++ +.|++|.++++++ ++++++||+|.||.... ..++... ....++++ +|||.+|+.|
T Consensus 197 ~~~G~~~~~~~~l~~l~~l~~~~-g~lli~DEv~~g~g~~g---~~~~~~~-~~~~pdi~---~~sK~lg~gg 261 (396)
T PRK04073 197 GEAGINIPPEGFLKAARELCKEE-NVLFIADEIQTGLGRTG---KLFACDW-DNVTPDMY---ILGKALGGGV 261 (396)
T ss_pred CCCCCccCCHHHHHHHHHHHHHc-CCEEEEecchhCCCcCc---HHHHhhh-cCCCCCEE---EecccccCCC
Confidence 888988765 5699999999999 99999999999986432 1122221 12334533 5899999865
No 121
>TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative. This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions.
Probab=98.01 E-value=1.2e-05 Score=62.52 Aligned_cols=66 Identities=18% Similarity=0.219 Sum_probs=44.1
Q ss_pred ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhhccCC
Q psy207 37 SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNFGLYS 108 (109)
Q Consensus 37 ~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~fglyg 108 (109)
|+||...+ +++|+++++++ ++++++|++|..+..+..... ....+.-.....+++.||||.||+.|
T Consensus 174 ~~tG~~~~---~~~i~~l~~~~-~~~li~De~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~s~sK~~~~~g 239 (385)
T TIGR01825 174 SMDGDVAP---LPEIVELAERY-GAVTYVDDAHGSGVMGEAGRG--TVHHFGLEDKVDIQVGTLSKAIGVVG 239 (385)
T ss_pred cCCCCccC---HHHHHHHHHHh-CCEEEEECcccccCcCCCCCc--cHhhcCCCcCCcEEEEeccHHhhcCC
Confidence 77776544 67889999999 999999999976544311011 11111111346788999999999764
No 122
>PRK02627 acetylornithine aminotransferase; Provisional
Probab=98.00 E-value=1e-05 Score=63.13 Aligned_cols=70 Identities=20% Similarity=0.343 Sum_probs=49.4
Q ss_pred CCCeeee----ccCC-CCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhh
Q psy207 30 HPKKVNL----SVGG-CDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNF 104 (109)
Q Consensus 30 ~~~kv~L----~~~~-~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~f 104 (109)
.++.|.+ |||| ..++++.+++|.++++++ ++++|+||+|.||.... .......+ ...+++ .||||.+
T Consensus 182 ~~~~vii~p~~~~~G~~~~~~~~l~~l~~l~~~~-~~~lI~DE~~~g~g~~g---~~~~~~~~-~~~pdi---~t~sK~~ 253 (396)
T PRK02627 182 KTAAVMLEPIQGEGGVNPADKEYLQALRELCDEN-GILLILDEVQTGMGRTG---KLFAYQHY-GIEPDI---MTLAKGL 253 (396)
T ss_pred CeEEEEEecccCCCCCccCCHHHHHHHHHHHHHc-CCEEEEechhcCCCccC---ceeeehhc-CCCCCE---EEEcchh
Confidence 4456666 6677 688999999999999999 99999999999996431 11122112 223443 3799999
Q ss_pred ccCC
Q psy207 105 GLYS 108 (109)
Q Consensus 105 glyg 108 (109)
| .|
T Consensus 254 ~-~G 256 (396)
T PRK02627 254 G-GG 256 (396)
T ss_pred h-CC
Confidence 8 55
No 123
>PLN02721 threonine aldolase
Probab=97.95 E-value=2.3e-05 Score=59.90 Aligned_cols=40 Identities=20% Similarity=0.241 Sum_probs=35.1
Q ss_pred CCCeeee-----ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccc
Q psy207 30 HPKKVNL-----SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQ 70 (109)
Q Consensus 30 ~~~kv~L-----~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~ 70 (109)
.++.|.| ||||..++.++|++|+++++++ ++++++|+||.
T Consensus 137 ~~~~v~l~~~~~np~G~~~~~~~l~~l~~l~~~~-g~~livD~a~~ 181 (353)
T PLN02721 137 TTRLICLENTHANCGGRCLSVEYTDKVGELAKRH-GLKLHIDGARI 181 (353)
T ss_pred cceEEEEeccccccCCccccHHHHHHHHHHHHHc-CCEEEEEchhh
Confidence 4556666 5789999999999999999999 99999999985
No 124
>PRK03244 argD acetylornithine aminotransferase; Provisional
Probab=97.91 E-value=2.3e-05 Score=61.64 Aligned_cols=61 Identities=15% Similarity=0.190 Sum_probs=44.1
Q ss_pred ccCCCCCCHHH-HHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhhc
Q psy207 37 SVGGCDPTEDQ-WKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNFG 105 (109)
Q Consensus 37 ~~~~~~lt~eq-w~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~fg 105 (109)
||||..+.+++ |++|.++++++ ++++++||+|.||.... ..+..... ...+++ -||||.+|
T Consensus 194 ~~~G~~~~~~~~l~~l~~l~~~~-~~llI~DEv~~g~gr~g---~~~~~~~~-~~~pDi---~t~sK~l~ 255 (398)
T PRK03244 194 GEAGVVPPPAGYLAAAREITDRH-GALLVLDEVQTGIGRTG---AWFAHQHD-GVTPDV---VTLAKGLG 255 (398)
T ss_pred CCCCCcCCCHHHHHHHHHHHHHc-CCEEEEeccccCCcccc---hHHhhhhh-CCCCCE---EEEchhhh
Confidence 88898876655 99999999999 99999999999986432 11122221 233553 38899998
No 125
>PRK09064 5-aminolevulinate synthase; Validated
Probab=97.91 E-value=2.5e-05 Score=61.51 Aligned_cols=70 Identities=17% Similarity=0.224 Sum_probs=44.9
Q ss_pred CCeeee----ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccc-cccCCChhhhHHHHHHhHHh-CCcEEEEechhhhh
Q psy207 31 PKKVNL----SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQ-GFASGDLERDAFAVRYFAQE-GFEFLCSQSFAKNF 104 (109)
Q Consensus 31 ~~kv~L----~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~-gf~~g~~~~d~~~l~~~~~~-~~~~~v~~SfSK~f 104 (109)
++.|.+ |++|.... +++|.++++++ ++++++||||. |+. |...... .... +. ....++++||||+|
T Consensus 179 ~~~v~~~~v~s~~G~~~~---l~~i~~l~~~~-~~~livDEa~~~G~~-g~~g~g~--~~~~-~~~~~~div~~t~sKa~ 250 (407)
T PRK09064 179 PKLIAFESVYSMDGDIAP---IAEICDLADKY-NALTYLDEVHAVGMY-GPRGGGI--AERD-GLMDRIDIIEGTLAKAF 250 (407)
T ss_pred CeEEEEeCCCCCCccccC---HHHHHHHHHHc-CCEEEEECCCccccc-CCCCCCh--HHhc-CCCCCCeEEEEecchhh
Confidence 445555 66665554 77888888899 99999999997 532 2110111 1111 11 12367899999999
Q ss_pred ccCC
Q psy207 105 GLYS 108 (109)
Q Consensus 105 glyg 108 (109)
|+.|
T Consensus 251 g~~G 254 (407)
T PRK09064 251 GVMG 254 (407)
T ss_pred hccC
Confidence 9876
No 126
>PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed
Probab=97.90 E-value=2.1e-05 Score=62.24 Aligned_cols=63 Identities=21% Similarity=0.250 Sum_probs=45.0
Q ss_pred ccCCCC--CCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhhccCC
Q psy207 37 SVGGCD--PTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNFGLYS 108 (109)
Q Consensus 37 ~~~~~~--lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~fglyg 108 (109)
+|+|.. ++++.+++|.++++++ ++++|+||+|.||.... .......+ ...+. +.||||++| .|
T Consensus 194 ~~~gg~~~~~~~~l~~l~~l~~~~-g~~lI~DEv~~g~g~~g---~~~~~~~~-~~~pd---i~s~sK~l~-~G 258 (403)
T PRK05093 194 QGEGGVIPATPEFLQGLRELCDQH-NALLIFDEVQTGMGRTG---DLFAYMHY-GVTPD---ILTSAKALG-GG 258 (403)
T ss_pred cCCCCCccCCHHHHHHHHHHHHHc-CCEEEEechhhCCCCCc---cchhhhhc-CCCCC---EEEeccccc-CC
Confidence 555554 4999999999999999 99999999999996542 11121111 22344 469999998 44
No 127
>PRK02936 argD acetylornithine aminotransferase; Provisional
Probab=97.84 E-value=4.5e-05 Score=59.43 Aligned_cols=63 Identities=19% Similarity=0.273 Sum_probs=44.7
Q ss_pred ccCCCC-CCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhhccCC
Q psy207 37 SVGGCD-PTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNFGLYS 108 (109)
Q Consensus 37 ~~~~~~-lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~fglyg 108 (109)
+++|.. .+++.|++|.++++++ ++++|+||+|.||.... .......+ ...+++ .||||.+| .|
T Consensus 178 ~~~G~~~~~~~~l~~l~~l~~~~-~~~lI~DEv~~g~g~~g---~~~~~~~~-~~~~di---~t~sK~l~-~G 241 (377)
T PRK02936 178 GEGGVIPADPAFLQEVQTLCKKF-GALLIIDEVQTGIGRTG---TLFAYEQF-GLDPDI---VTVAKGLG-NG 241 (377)
T ss_pred CCCCCccCCHHHHHHHHHHHHHc-CCEEEEeccccCCCcCc---hhhHHHhh-CCCCcE---EEEccccc-CC
Confidence 555554 6899999999999999 99999999999986532 11222222 223443 37999998 55
No 128
>PRK01278 argD acetylornithine transaminase protein; Provisional
Probab=97.83 E-value=2.1e-05 Score=61.76 Aligned_cols=68 Identities=24% Similarity=0.349 Sum_probs=47.4
Q ss_pred CCCeeee----ccCC-CCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhh
Q psy207 30 HPKKVNL----SVGG-CDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNF 104 (109)
Q Consensus 30 ~~~kv~L----~~~~-~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~f 104 (109)
..+.|.+ |++| ..++++.|++|.++++++ ++++|+||+|.||.... .......+ ...+. +.||||++
T Consensus 175 ~~~avivep~~~~~G~~~~~~~~l~~l~~l~~~~-g~~lI~DEv~~g~g~~g---~~~~~~~~-~~~pd---i~t~sK~l 246 (389)
T PRK01278 175 NTAAILIEPIQGEGGIRPAPDEFLKGLRQLCDEN-GLLLIFDEVQCGMGRTG---KLFAHEWA-GVTPD---IMAVAKGI 246 (389)
T ss_pred CeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHc-CCEEEEeccccCCCcCC---cceeeccc-CCCCC---EEEEehhc
Confidence 3455555 5566 688999999999999999 99999999999986421 11111111 12234 34899999
Q ss_pred c
Q psy207 105 G 105 (109)
Q Consensus 105 g 105 (109)
|
T Consensus 247 ~ 247 (389)
T PRK01278 247 G 247 (389)
T ss_pred c
Confidence 7
No 129
>cd00610 OAT_like Acetyl ornithine aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation.
Probab=97.81 E-value=0.0001 Score=57.67 Aligned_cols=62 Identities=23% Similarity=0.371 Sum_probs=43.6
Q ss_pred ccCCCC-CCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhhcc
Q psy207 37 SVGGCD-PTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNFGL 106 (109)
Q Consensus 37 ~~~~~~-lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~fgl 106 (109)
+++|.. +++++|++|.++++++ ++++++||+|.||.... .......+ ...++ +.||||.+|.
T Consensus 202 ~~~G~~~~~~~~l~~l~~l~~~~-~~~li~Dev~~g~g~~g---~~~~~~~~-~~~~d---~~t~sK~l~~ 264 (413)
T cd00610 202 GEGGVIVPPPGYLKALRELCRKH-GILLIADEVQTGFGRTG---KMFAFEHF-GVEPD---IVTLGKGLGG 264 (413)
T ss_pred CCCCCccCCHHHHHHHHHHHHHc-CCEEEEeccccCCCcCc---chhhHhhc-CCCCC---eEEEcccccC
Confidence 666775 4888899999999999 99999999999984321 11122221 22344 3489999986
No 130
>COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism]
Probab=97.79 E-value=4.8e-05 Score=60.15 Aligned_cols=72 Identities=19% Similarity=0.209 Sum_probs=53.8
Q ss_pred CCCeeee----ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhhc
Q psy207 30 HPKKVNL----SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNFG 105 (109)
Q Consensus 30 ~~~kv~L----~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~fg 105 (109)
..-.|++ ||||..+|.||..+|.++.+.+ ++-++.|.||--=-.+=.-.|+..+ -+.|++.|.|+||. |
T Consensus 179 ~~g~ic~SRPtNPTGNVlTdeE~~kldalA~~~-giPliIDnAYg~PFP~iifsd~~~~-----w~~NiilC~SLSK~-G 251 (417)
T COG3977 179 STGAICVSRPTNPTGNVLTDEELAKLDALARQH-GIPLIIDNAYGVPFPGIIFSDATPL-----WNENIILCMSLSKL-G 251 (417)
T ss_pred ccceEEecCCCCCCCCcccHHHHHHHHHHhhhc-CCcEEEecccCCCCCceeccccccc-----CCCCEEEEeehhhc-C
Confidence 3345555 9999999999999999999999 9999999999643333111233232 46899999999994 5
Q ss_pred cCC
Q psy207 106 LYS 108 (109)
Q Consensus 106 lyg 108 (109)
|-|
T Consensus 252 LPG 254 (417)
T COG3977 252 LPG 254 (417)
T ss_pred CCC
Confidence 544
No 131
>PRK06234 methionine gamma-lyase; Provisional
Probab=97.78 E-value=5.9e-05 Score=60.19 Aligned_cols=66 Identities=18% Similarity=0.112 Sum_probs=46.0
Q ss_pred CCCCeeee----ccCCCCCCHHHHHHHHHHHHhC-CCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhh
Q psy207 29 PHPKKVNL----SVGGCDPTEDQWKQLAQLFKER-PSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKN 103 (109)
Q Consensus 29 ~~~~kv~L----~~~~~~lt~eqw~~i~~~~~~~-p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~ 103 (109)
++++.|.+ ||||...+ +++|+++++++ +++++++|++|.....+. .+ +.+ .-++++|+||+
T Consensus 148 ~~tklI~iesP~NPtG~v~d---l~~I~~la~~~~~~i~livDea~~~~~~~~------~l----~~g-~Divv~S~sK~ 213 (400)
T PRK06234 148 ANTKVVYLETPANPTLKVTD---IKAISNIAHENNKECLVFVDNTFCTPYIQR------PL----QLG-ADVVVHSATKY 213 (400)
T ss_pred cCCeEEEEECCCCCCCCcCC---HHHHHHHHHhcCCCCEEEEECCCCchhcCC------ch----hhC-CcEEEeecccc
Confidence 35667776 88998777 56666666674 378999999998665432 12 112 23789999999
Q ss_pred hccCC
Q psy207 104 FGLYS 108 (109)
Q Consensus 104 fglyg 108 (109)
+|..|
T Consensus 214 l~g~g 218 (400)
T PRK06234 214 LNGHG 218 (400)
T ss_pred ccCCC
Confidence 98765
No 132
>PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed
Probab=97.78 E-value=6.3e-05 Score=60.03 Aligned_cols=65 Identities=12% Similarity=0.038 Sum_probs=46.7
Q ss_pred CCCCeeee----ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhh
Q psy207 29 PHPKKVNL----SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNF 104 (109)
Q Consensus 29 ~~~~kv~L----~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~f 104 (109)
++++.|.+ ||+|...+ +++|.++++++ ++++++|++|....... .+ +.+. -+++.|+||+|
T Consensus 149 ~~tklV~lesp~NptG~v~d---l~~I~~la~~~-gi~lvvD~a~a~~~~~~------~~----~~ga-Divv~S~sK~l 213 (398)
T PRK07504 149 PNTKVFFLESPTNPTLEVID---IAAVAKIANQA-GAKLVVDNVFATPLFQK------PL----ELGA-HIVVYSATKHI 213 (398)
T ss_pred cCceEEEEECCCCCCcEecC---HHHHHHHHHHc-CCEEEEECCccccccCC------ch----hhCC-CEEEeeccccc
Confidence 45667776 88888886 66677777888 99999999997544321 12 2233 35799999999
Q ss_pred ccCC
Q psy207 105 GLYS 108 (109)
Q Consensus 105 glyg 108 (109)
|..|
T Consensus 214 ~g~g 217 (398)
T PRK07504 214 DGQG 217 (398)
T ss_pred cCCc
Confidence 8765
No 133
>PRK06460 hypothetical protein; Provisional
Probab=97.77 E-value=6.1e-05 Score=59.65 Aligned_cols=62 Identities=13% Similarity=0.073 Sum_probs=44.7
Q ss_pred CCCCeeee----ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhh
Q psy207 29 PHPKKVNL----SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNF 104 (109)
Q Consensus 29 ~~~~kv~L----~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~f 104 (109)
++++.|.+ ||||...+.++ |+++++++ ++++++|++|..+.... .+ +.+ ..++++|+||+|
T Consensus 129 ~~tklV~l~sp~NPtG~v~d~~~---I~~la~~~-g~~vivDea~~~~~~~~------~l----~~~-~divv~S~sK~l 193 (376)
T PRK06460 129 KRYDVVFVENITNPLLRVVDITE---LSKVCKEN-GSILIVDATFSTPINQK------PL----ELG-ADIVVHSASKFL 193 (376)
T ss_pred CCceEEEEECCCCCCCcccCHHH---HHHHHHHc-CCEEEEECCcCccccCC------hh----hcC-CCEEEeecceec
Confidence 45566776 99999999875 56666788 99999999997643221 11 122 348899999998
Q ss_pred c
Q psy207 105 G 105 (109)
Q Consensus 105 g 105 (109)
|
T Consensus 194 ~ 194 (376)
T PRK06460 194 A 194 (376)
T ss_pred c
Confidence 5
No 134
>TIGR01328 met_gam_lyase methionine gamma-lyase. This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine.
Probab=97.75 E-value=7.4e-05 Score=59.50 Aligned_cols=65 Identities=14% Similarity=0.084 Sum_probs=46.0
Q ss_pred CCCCeeee----ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhh
Q psy207 29 PHPKKVNL----SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNF 104 (109)
Q Consensus 29 ~~~~kv~L----~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~f 104 (109)
++++.|.+ ||+|...+ +++|+++++++ ++++++|++|.....+. .+ +.+.. ++++|+||.+
T Consensus 143 ~~tklV~le~p~Np~G~v~d---l~~I~~la~~~-gi~livD~a~a~~~~~~------~~----~~g~D-ivv~S~sK~l 207 (391)
T TIGR01328 143 DNTKIVYFETPANPTMKLID---MERVCRDAHSQ-GVKVIVDNTFATPMLTN------PV----ALGVD-VVVHSATKYI 207 (391)
T ss_pred cCCeEEEEECCCCCCCcccC---HHHHHHHHHHc-CCEEEEECCCchhccCC------ch----hcCCC-EEEccccccc
Confidence 45666666 77877665 66777778888 99999999997544332 12 23334 7789999999
Q ss_pred ccCC
Q psy207 105 GLYS 108 (109)
Q Consensus 105 glyg 108 (109)
|..|
T Consensus 208 gg~g 211 (391)
T TIGR01328 208 GGHG 211 (391)
T ss_pred cCCC
Confidence 9765
No 135
>PLN02822 serine palmitoyltransferase
Probab=97.73 E-value=7.8e-05 Score=61.02 Aligned_cols=66 Identities=11% Similarity=0.045 Sum_probs=44.6
Q ss_pred ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhH-HhCCcEEEEechhhhhccCC
Q psy207 37 SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFA-QEGFEFLCSQSFAKNFGLYS 108 (109)
Q Consensus 37 ~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~-~~~~~~~v~~SfSK~fglyg 108 (109)
+++|...+ +++|+++++++ ++++++||+|.-...|.-.+. ...++- .....-+++.||||+||+.|
T Consensus 256 ~~~G~i~~---L~~i~~l~~k~-~~~LIvDEa~s~gvlG~~G~G--~~e~~~v~~~~~dii~~s~sKalg~~G 322 (481)
T PLN02822 256 QNSGQIAP---LDEIVRLKEKY-RFRVLLDESNSFGVLGKSGRG--LSEHFGVPIEKIDIITAAMGHALATEG 322 (481)
T ss_pred CCCCCccC---HHHHHHHHHHc-CCEEEEECCccccccCCCCCC--hHHHcCCCCCCCeEEEecchhhhhhCC
Confidence 77888877 67888888899 999999999983333421111 112221 11233478899999999876
No 136
>PRK08045 cystathionine gamma-synthase; Provisional
Probab=97.72 E-value=7.9e-05 Score=59.38 Aligned_cols=62 Identities=18% Similarity=0.144 Sum_probs=44.7
Q ss_pred CCCCeeee----ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhh
Q psy207 29 PHPKKVNL----SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNF 104 (109)
Q Consensus 29 ~~~~kv~L----~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~f 104 (109)
++++.|.| ||||..++. ++|.++++++ ++++++|++|....... .+ +.+.. ++++|++|++
T Consensus 136 ~~tklV~l~sP~NPtG~v~di---~~I~~ia~~~-g~~vivDeay~~~~~~~------pl----~~gaD-ivv~S~tK~l 200 (386)
T PRK08045 136 EKPKLVLVESPSNPLLRVVDI---AKICHLAREA-GAVSVVDNTFLSPALQN------PL----ALGAD-LVLHSCTKYL 200 (386)
T ss_pred cCCeEEEEECCCCCCCEecCH---HHHHHHHHHc-CCEEEEECCCCccccCC------ch----hhCCC-EEEeecceec
Confidence 35667776 999988875 5666667788 99999999997654321 22 22334 7899999998
Q ss_pred c
Q psy207 105 G 105 (109)
Q Consensus 105 g 105 (109)
|
T Consensus 201 ~ 201 (386)
T PRK08045 201 N 201 (386)
T ss_pred c
Confidence 6
No 137
>PRK05968 hypothetical protein; Provisional
Probab=97.69 E-value=0.00014 Score=57.83 Aligned_cols=65 Identities=20% Similarity=0.170 Sum_probs=50.7
Q ss_pred CCCeeee-ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhhcc
Q psy207 30 HPKKVNL-SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNFGL 106 (109)
Q Consensus 30 ~~~kv~L-~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~fgl 106 (109)
.++.|.+ ||++..+...++++|+++++++ ++.+++|++|....... .+ +.+.. ++++|+||.++-
T Consensus 147 ~tklV~ie~pt~~~~~~~dl~~i~~la~~~-gi~vivD~a~a~~~~~~------p~----~~g~D-ivv~S~tK~l~g 212 (389)
T PRK05968 147 GAKLLYLESPTSWVFELQDVAALAALAKRH-GVVTMIDNSWASPVFQR------PI----TLGVD-LVIHSASKYLGG 212 (389)
T ss_pred cCCEEEEECCCCCCCcHHHHHHHHHHHHHc-CCEEEEECCCcchhccC------ch----hcCCc-EEEeeccccccC
Confidence 4566666 9999999999999999999999 99999999986554321 12 12333 678899999985
No 138
>cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.
Probab=97.68 E-value=9.1e-05 Score=56.41 Aligned_cols=65 Identities=22% Similarity=0.184 Sum_probs=42.2
Q ss_pred ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhH-HhCCcEEEEechhhhhccCC
Q psy207 37 SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFA-QEGFEFLCSQSFAKNFGLYS 108 (109)
Q Consensus 37 ~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~-~~~~~~~v~~SfSK~fglyg 108 (109)
||||... ++++|+++++++ ++++++|++|.....+. ....+..+. ......+++.|+||+||+.|
T Consensus 143 ~~tG~~~---~~~~i~~~~~~~-~~~livD~a~~~g~~~~---~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g 208 (349)
T cd06454 143 SMDGDIA---PLPELVDLAKKY-GAILFVDEAHSVGVYGP---HGRGVEEFGGLTDDVDIIMGTLGKAFGAVG 208 (349)
T ss_pred cCCCCcc---CHHHHHHHHHHc-CCEEEEEccccccccCC---CCCChhhhccccccCcEEEeechhhhcccC
Confidence 7888654 467888888899 99999999986211121 000111111 22345788999999999754
No 139
>TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase. This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives.
Probab=97.68 E-value=9.1e-05 Score=58.39 Aligned_cols=64 Identities=16% Similarity=0.170 Sum_probs=42.0
Q ss_pred ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccc-cccCCChhhhHHHHHHhHHh-CCcEEEEechhhhhccCC
Q psy207 37 SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQ-GFASGDLERDAFAVRYFAQE-GFEFLCSQSFAKNFGLYS 108 (109)
Q Consensus 37 ~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~-gf~~g~~~~d~~~l~~~~~~-~~~~~v~~SfSK~fglyg 108 (109)
||+|.... +++|.++++++ +.++++|+||. |+. |...... ...+ .. ....++..||||+||+.|
T Consensus 188 ~~~G~~~~---l~~i~~l~~~~-~~~livDea~~~G~~-g~~g~g~--~~~~-~~~~~~div~~t~sKa~g~~G 253 (402)
T TIGR01821 188 SMDGDIAP---IEEICDLADKY-GALTYLDEVHAVGLY-GPRGGGI--AERD-GLMHRIDIIEGTLAKAFGVVG 253 (402)
T ss_pred CCCCCccC---HHHHHHHHHHc-CCEEEEeCccccccc-CCCCCcc--chhc-cCCCCCeEEEEechhhhccCC
Confidence 78887765 77888888899 99999999987 432 2110111 1111 11 112577899999999865
No 140
>PRK02948 cysteine desulfurase; Provisional
Probab=97.65 E-value=8.6e-05 Score=57.86 Aligned_cols=65 Identities=22% Similarity=0.161 Sum_probs=45.9
Q ss_pred CCCeeee----ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhhc
Q psy207 30 HPKKVNL----SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNFG 105 (109)
Q Consensus 30 ~~~kv~L----~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~fg 105 (109)
.++.|.+ ||||...+.+ +|.++++++ +.++++| +||.|+.-.+ | + .+.+ .-+++.|+||.||
T Consensus 138 ~~~lv~~~~~~n~tG~~~~~~---~I~~l~~~~-~~~vivD-~~~~~g~~~~--~---~---~~~~-~d~~~~s~~K~~g 203 (381)
T PRK02948 138 DTVLASIQHANSEIGTIQPIA---EIGALLKKY-NVLFHSD-CVQTFGKLPI--D---V---FEMG-IDSLSVSAHKIYG 203 (381)
T ss_pred CCEEEEEECCcCCcEeehhHH---HHHHHHHHc-CCEEEEE-Chhhcccccc--C---c---ccCC-CCEEEecHHhcCC
Confidence 4455656 8999988754 677777788 9999999 7888864321 2 1 1223 3456889999999
Q ss_pred cCC
Q psy207 106 LYS 108 (109)
Q Consensus 106 lyg 108 (109)
..|
T Consensus 204 p~G 206 (381)
T PRK02948 204 PKG 206 (381)
T ss_pred CCc
Confidence 876
No 141
>cd00615 Orn_deC_like Ornithine decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.
Probab=97.63 E-value=0.00013 Score=55.50 Aligned_cols=73 Identities=21% Similarity=0.147 Sum_probs=47.0
Q ss_pred hhhhcCCCCCCeeee---ccCCCCCCHHHHHHHHHHHHhCCCcEEEEeccccccc-CC-ChhhhHHHHHHhHHhCCcEEE
Q psy207 22 NKAYLDDPHPKKVNL---SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFA-SG-DLERDAFAVRYFAQEGFEFLC 96 (109)
Q Consensus 22 ~~~~~~d~~~~kv~L---~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~-~g-~~~~d~~~l~~~~~~~~~~~v 96 (109)
.+.....+.++.|.+ |++|...+ +++|+++++++ ++++++|+||.... .+ .+..+ . .....-++
T Consensus 146 ~~~l~~~~~~k~v~l~~p~~~G~~~d---l~~I~~~~~~~-g~~livDeA~~~~~~~~~~~~~~--~-----~~~~~div 214 (294)
T cd00615 146 KKALIEHPDAKAAVITNPTYYGICYN---LRKIVEEAHHR-GLPVLVDEAHGAHFRFHPILPSS--A-----AMAGADIV 214 (294)
T ss_pred HHHHHhCCCceEEEEECCCCCCEecC---HHHHHHHHHhc-CCeEEEECcchhhhccCcccCcc--h-----hhcCCcEE
Confidence 344434455666777 55676664 67888888899 99999999987532 22 11111 1 12235688
Q ss_pred Eechhhhhc
Q psy207 97 SQSFAKNFG 105 (109)
Q Consensus 97 ~~SfSK~fg 105 (109)
++|++|+++
T Consensus 215 ~~S~hK~l~ 223 (294)
T cd00615 215 VQSTHKTLP 223 (294)
T ss_pred EEchhcccc
Confidence 999999874
No 142
>PRK07503 methionine gamma-lyase; Provisional
Probab=97.63 E-value=0.00014 Score=58.07 Aligned_cols=65 Identities=15% Similarity=0.074 Sum_probs=46.4
Q ss_pred CCCCeeee----ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhh
Q psy207 29 PHPKKVNL----SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNF 104 (109)
Q Consensus 29 ~~~~kv~L----~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~f 104 (109)
++++.|.+ ||+|...+ +++|+++++++ ++++++|++|.....+. .+ +.+.. +++.|+||++
T Consensus 149 ~~tklV~le~p~NPtG~~~d---i~~I~~la~~~-gi~lIvD~a~a~~~~~~------~l----~~g~D-i~v~S~tK~l 213 (403)
T PRK07503 149 DKTRMVYFETPANPNMRLVD---IAAVAEIAHGA-GAKVVVDNTYCTPYLQR------PL----ELGAD-LVVHSATKYL 213 (403)
T ss_pred ccCcEEEEeCCCCCCCeeeC---HHHHHHHHHHc-CCEEEEECCCcccccCC------ch----hhCCC-EEEccccccc
Confidence 35677775 88887765 56777777899 99999999997544332 12 12223 7889999999
Q ss_pred ccCC
Q psy207 105 GLYS 108 (109)
Q Consensus 105 glyg 108 (109)
|..|
T Consensus 214 ~g~g 217 (403)
T PRK07503 214 GGHG 217 (403)
T ss_pred cCCC
Confidence 9754
No 143
>cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis
Probab=97.61 E-value=0.00017 Score=48.73 Aligned_cols=70 Identities=24% Similarity=0.310 Sum_probs=46.4
Q ss_pred CCCCCeeee----ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhh
Q psy207 28 DPHPKKVNL----SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKN 103 (109)
Q Consensus 28 d~~~~kv~L----~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~ 103 (109)
+.+++.+.+ |++|...+. ++|+++++++ ++++++|++|.++..+... . .....+ .-+++.|++|+
T Consensus 90 ~~~~~~v~~~~~~~~~g~~~~~---~~l~~~~~~~-~~~li~D~a~~~~~~~~~~-----~-~~~~~~-~d~~~~s~~K~ 158 (170)
T cd01494 90 KPNVALIVITPNTTSGGVLVPL---KEIRKIAKEY-GILLLVDAASAGGASPAPG-----V-LIPEGG-ADVVTFSLHKN 158 (170)
T ss_pred cCceEEEEEecCcCCCCeEcCH---HHHHHHHHHc-CCEEEEecccccccccccc-----c-cccccc-CCEEEEEcccc
Confidence 345555555 566766655 6667777788 9999999999999876311 0 011223 34667899999
Q ss_pred hccCC
Q psy207 104 FGLYS 108 (109)
Q Consensus 104 fglyg 108 (109)
||..|
T Consensus 159 ~~~~~ 163 (170)
T cd01494 159 LGGEG 163 (170)
T ss_pred cCCCc
Confidence 98643
No 144
>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine.
Probab=97.59 E-value=0.00016 Score=57.46 Aligned_cols=62 Identities=19% Similarity=0.149 Sum_probs=43.6
Q ss_pred CCCCeeee----ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhh
Q psy207 29 PHPKKVNL----SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNF 104 (109)
Q Consensus 29 ~~~~kv~L----~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~f 104 (109)
++++.|.+ ||||..++.+ +|+++++++ ++++++|++|..+.... .+. .+.. ++++|+||++
T Consensus 135 ~~tklV~l~~p~NPtG~~~dl~---~I~~la~~~-g~~vvvD~a~~~~~~~~------pl~----~gaD-ivv~S~sK~l 199 (382)
T TIGR02080 135 QKPKLVLIETPSNPLLRVVDIA---KICHLAKAV-GAVVVVDNTFLSPALQN------PLA----LGAD-LVLHSCTKYL 199 (382)
T ss_pred cCceEEEEECCCCCCCEecCHH---HHHHHHHHc-CCEEEEECCCcccccCC------chh----hCCC-EEEeecceec
Confidence 34666776 9999988765 566667788 99999999997554221 121 2222 7789999988
Q ss_pred c
Q psy207 105 G 105 (109)
Q Consensus 105 g 105 (109)
+
T Consensus 200 ~ 200 (382)
T TIGR02080 200 N 200 (382)
T ss_pred c
Confidence 6
No 145
>PRK08249 cystathionine gamma-synthase; Provisional
Probab=97.58 E-value=0.00016 Score=57.83 Aligned_cols=63 Identities=16% Similarity=0.052 Sum_probs=45.1
Q ss_pred CCCCeeee----ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhh
Q psy207 29 PHPKKVNL----SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNF 104 (109)
Q Consensus 29 ~~~~kv~L----~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~f 104 (109)
++++.|.+ ||+|...+ +++|+++++++ ++++++|++|..+.... .+ ..+.. ++++|+||.+
T Consensus 148 ~~tklV~ie~p~NPtg~v~d---l~~I~~la~~~-gi~livD~t~a~~~~~~------~l----~~~~D-ivv~S~sK~l 212 (398)
T PRK08249 148 KGCDLLYLETPTNPTLKIVD---IERLAAAAKKV-GALVVVDNTFATPINQN------PL----ALGAD-LVIHSATKFL 212 (398)
T ss_pred CCCeEEEEECCCCCCCccCC---HHHHHHHHHHc-CCEEEEECCcCccccCC------ch----hhCCC-EEeccCceec
Confidence 35677776 88898887 55677778889 99999999998655332 11 12333 5679999999
Q ss_pred cc
Q psy207 105 GL 106 (109)
Q Consensus 105 gl 106 (109)
|-
T Consensus 213 ~g 214 (398)
T PRK08249 213 SG 214 (398)
T ss_pred CC
Confidence 73
No 146
>PLN02955 8-amino-7-oxononanoate synthase
Probab=97.58 E-value=0.0002 Score=59.14 Aligned_cols=89 Identities=21% Similarity=0.186 Sum_probs=55.0
Q ss_pred CCCChhhchhhhhcCCCCCCeeee-----ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHh
Q psy207 13 GPPIEVFAVNKAYLDDPHPKKVNL-----SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYF 87 (109)
Q Consensus 13 ~p~d~~f~l~~~~~~d~~~~kv~L-----~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~ 87 (109)
.+.|.. .|.+..+.....+++.+ +..|.... +++|.++++++ +.++++|||+-.+..|.--.- ..+.+
T Consensus 232 ~HND~~-~Le~~L~~~~~~~~~Vv~EgV~SmdGdiap---L~eL~~L~~~~-ga~LiVDEAH~~Gv~G~~G~G--~~e~~ 304 (476)
T PLN02955 232 RHCDMY-HLNSLLSSCKMKRKVVVTDSLFSMDGDFAP---MEELSQLRKKY-GFLLVIDDAHGTFVCGENGGG--VAEEF 304 (476)
T ss_pred CCCCHH-HHHHHHHhCCCCceEEEEeCCCCCCCCcCC---HHHHHHHHHHc-CcEEEEcccccCceecCCCCc--HHHHh
Confidence 344443 44444433233334444 55665555 66677777788 999999999987776631111 22223
Q ss_pred HHhCCcEEEEechhhhhccCC
Q psy207 88 AQEGFEFLCSQSFAKNFGLYS 108 (109)
Q Consensus 88 ~~~~~~~~v~~SfSK~fglyg 108 (109)
--.....+++.||||+||..|
T Consensus 305 g~~~di~ii~~TLsKA~G~~G 325 (476)
T PLN02955 305 NCEADVDLCVGTLSKAAGCHG 325 (476)
T ss_pred CCCCCCcEEEEeCccchhccC
Confidence 213467799999999999876
No 147
>PRK08360 4-aminobutyrate aminotransferase; Provisional
Probab=97.57 E-value=0.00016 Score=58.62 Aligned_cols=63 Identities=21% Similarity=0.378 Sum_probs=45.2
Q ss_pred ccCCCCCC-HHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhhccCC
Q psy207 37 SVGGCDPT-EDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNFGLYS 108 (109)
Q Consensus 37 ~~~~~~lt-~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~fglyg 108 (109)
|+||..+. ++.+++|.++++++ ++++|+||+|.||.... ..++...+ ...+.++ +|||.+| .|
T Consensus 215 ~~~G~~~~~~~~l~~l~~l~~~~-g~llI~DEv~~g~gr~G---~~~a~~~~-~~~pDii---tlsK~l~-~G 278 (443)
T PRK08360 215 GDAGMIVPPEDYFKKLKKILDEH-GILLVVDEVQSGLGRTG---KWFAIEHF-GVEPDII---TLGKPLG-GG 278 (443)
T ss_pred CCCCCcCCCHHHHHHHHHHHHHc-CCEEEEeccccCCCcCc---cchhhhhc-CCCCCEE---Eeccccc-CC
Confidence 88888776 66799999999999 99999999999996421 11222222 2334533 7799998 44
No 148
>PRK06767 methionine gamma-lyase; Provisional
Probab=97.56 E-value=0.0002 Score=56.81 Aligned_cols=65 Identities=20% Similarity=0.171 Sum_probs=44.6
Q ss_pred CCCCeeee----ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhh
Q psy207 29 PHPKKVNL----SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNF 104 (109)
Q Consensus 29 ~~~~kv~L----~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~f 104 (109)
++++.|.+ ||+|...+. ++|.++++++ ++++++|++|.....+ .. + ..+.. ++++|+||.+
T Consensus 145 ~~tklV~lesp~NptG~v~dl---~~I~~la~~~-g~~vivD~a~a~~~~~---~p---l----~~g~D-iv~~S~sK~l 209 (386)
T PRK06767 145 PNTKLIFVETPINPTMKLIDL---KQVIRVAKRN-GLLVIVDNTFCSPYLQ---RP---L----ELGCD-AVVHSATKYI 209 (386)
T ss_pred cCceEEEEeCCCCCCceecCH---HHHHHHHHHc-CCEEEEECCCcccccC---Cc---h----hcCCc-EEEecCccee
Confidence 35677776 888887764 5666777788 9999999998532222 11 1 12333 6788999999
Q ss_pred ccCC
Q psy207 105 GLYS 108 (109)
Q Consensus 105 glyg 108 (109)
|..|
T Consensus 210 ~g~g 213 (386)
T PRK06767 210 GGHG 213 (386)
T ss_pred cCCC
Confidence 8754
No 149
>COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=97.56 E-value=3.9e-05 Score=61.67 Aligned_cols=36 Identities=31% Similarity=0.659 Sum_probs=32.7
Q ss_pred cccCCccCCCChhhchhhhhcCCCCCCeeeeccCCC
Q psy207 6 SFSSVQQGPPIEVFAVNKAYLDDPHPKKVNLSVGGC 41 (109)
Q Consensus 6 ~f~~v~~~p~d~~f~l~~~~~~d~~~~kv~L~~~~~ 41 (109)
.|++|+..|+|||++|++.|++|+.++||||++|.+
T Consensus 1 ~F~~i~~~p~DpIlgL~e~f~~D~R~~KVNLgIGvY 36 (396)
T COG1448 1 MFEKIEAAPADPILGLKEAFKADPRPNKVNLGIGVY 36 (396)
T ss_pred CccccccCCCCchhHHHHHHhcCCCcCeeeeeeeee
Confidence 389999999999999999999999999999965544
No 150
>TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities.
Probab=97.55 E-value=0.00022 Score=57.27 Aligned_cols=64 Identities=14% Similarity=0.119 Sum_probs=45.2
Q ss_pred CCCeeee----ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhhc
Q psy207 30 HPKKVNL----SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNFG 105 (109)
Q Consensus 30 ~~~kv~L----~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~fg 105 (109)
.++.|.+ ||+|...+ +++|+++++++ ++++++|++|...... + .+ +.+ .-++++||||.+|
T Consensus 142 ~t~~V~le~p~NPtg~v~d---l~~I~~la~~~-~i~livD~t~~~~~~~----~--~l----~~g-~Divv~S~sK~l~ 206 (418)
T TIGR01326 142 NTKAVFAETIGNPAINVPD---IEAIAEVAHAH-GVPLIVDNTFATPYLC----R--PI----DHG-ADIVVHSATKYIG 206 (418)
T ss_pred CCeEEEEECCCCCCCeecC---HHHHHHHHHHc-CCEEEEECCCchhhcC----C--ch----hcC-CeEEEECcccccc
Confidence 4566666 88887665 66788888899 9999999998522111 1 11 223 3678999999999
Q ss_pred cCC
Q psy207 106 LYS 108 (109)
Q Consensus 106 lyg 108 (109)
..|
T Consensus 207 g~G 209 (418)
T TIGR01326 207 GHG 209 (418)
T ss_pred CCc
Confidence 876
No 151
>PRK08133 O-succinylhomoserine sulfhydrylase; Validated
Probab=97.55 E-value=0.0002 Score=56.93 Aligned_cols=65 Identities=15% Similarity=0.100 Sum_probs=46.4
Q ss_pred CCCCeeee----ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhh
Q psy207 29 PHPKKVNL----SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNF 104 (109)
Q Consensus 29 ~~~~kv~L----~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~f 104 (109)
++++.|.+ ||+|...+ +++|+++++++ ++++++|++|....... .+ +.+.. +++.|+||++
T Consensus 145 ~~tklV~ie~p~NptG~v~d---l~~I~~la~~~-gi~livD~t~~~~~~~~------pl----~~g~D-ivv~S~sK~~ 209 (390)
T PRK08133 145 PNTKLFFLETPSNPLTELAD---IAALAEIAHAA-GALLVVDNCFCTPALQQ------PL----KLGAD-VVIHSATKYL 209 (390)
T ss_pred cCCeEEEEECCCCCCCCcCC---HHHHHHHHHHc-CCEEEEECCCcccccCC------ch----hhCCc-EEEeecceee
Confidence 45666775 89998875 67888888899 99999999985443221 12 12333 6799999999
Q ss_pred ccCC
Q psy207 105 GLYS 108 (109)
Q Consensus 105 glyg 108 (109)
|..|
T Consensus 210 ~g~g 213 (390)
T PRK08133 210 DGQG 213 (390)
T ss_pred cCCc
Confidence 8765
No 152
>PRK08247 cystathionine gamma-synthase; Reviewed
Probab=97.54 E-value=0.00027 Score=55.58 Aligned_cols=65 Identities=18% Similarity=0.266 Sum_probs=47.1
Q ss_pred CCCCeeee-ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhhc
Q psy207 29 PHPKKVNL-SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNFG 105 (109)
Q Consensus 29 ~~~~kv~L-~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~fg 105 (109)
++++.|.+ +|+.-..+.+++++|+++++++ ++++++|++|..-..+. .+ +.+ .-++++|+||.+|
T Consensus 135 ~~tklv~le~P~NP~~~~~dl~~I~~la~~~-g~~lIvD~t~~~~~~~~------p~----~~g-~di~i~S~sK~~~ 200 (366)
T PRK08247 135 PNTKAIFIETPTNPLMQETDIAAIAKIAKKH-GLLLIVDNTFYTPVLQR------PL----EEG-ADIVIHSATKYLG 200 (366)
T ss_pred cCceEEEEECCCCCCCcHHHHHHHHHHHHHc-CCEEEEECCCccccccC------ch----hcC-CcEEEeecceecc
Confidence 35677777 5665567889999999999999 99999999994222121 11 112 3478999999997
No 153
>PLN02483 serine palmitoyltransferase
Probab=97.53 E-value=0.00019 Score=58.94 Aligned_cols=61 Identities=18% Similarity=0.224 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhH-HhCCcEEEEechhhhhccCC
Q psy207 45 EDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFA-QEGFEFLCSQSFAKNFGLYS 108 (109)
Q Consensus 45 ~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~-~~~~~~~v~~SfSK~fglyg 108 (109)
..++++|+++++++ ++++++||||.-...|.-.+. ....+. ......+++.||||+||+.|
T Consensus 256 ~~~l~~I~~la~~~-~~~livDEa~s~g~~G~~G~g--~~~~~~v~~~~~dI~~~SfSKs~g~~G 317 (489)
T PLN02483 256 LCKLPEIVAVCKKY-KAYVYLDEAHSIGAVGKTGRG--VCELLGVDPADVDIMMGTFTKSFGSCG 317 (489)
T ss_pred ccCHHHHHHHHHHc-CCEEEEECcCccCccCCCCCc--hHHhcCCCcccCcEEEEecchhcccCc
Confidence 45788889999999 999999999862222310011 111111 11234688999999999876
No 154
>PTZ00125 ornithine aminotransferase-like protein; Provisional
Probab=97.53 E-value=0.00035 Score=54.75 Aligned_cols=69 Identities=13% Similarity=0.115 Sum_probs=46.9
Q ss_pred CCCeeee----ccCCCCCC-HHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhh
Q psy207 30 HPKKVNL----SVGGCDPT-EDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNF 104 (109)
Q Consensus 30 ~~~kv~L----~~~~~~lt-~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~f 104 (109)
..+.|.+ ||||..++ ++.|++|.++++++ ++++++||+|.||+... ........ ...+.++ +|||.+
T Consensus 178 ~~~~v~~ep~~~~~G~~~~~~~~l~~l~~l~~~~-~~lli~Dev~~g~g~~G---~~~~~~~~-~~~pd~~---~~sK~l 249 (400)
T PTZ00125 178 NVAAFIVEPIQGEAGVIVPDDGYLKQVYELCKKY-NVLLIVDEIQTGLGRTG---KLLAHDHE-GVKPDIV---LLGKAL 249 (400)
T ss_pred CeEEEEEcCccCCCCCccCCHHHHHHHHHHHHHc-CCEEEEeccccCCCccc---hhhHHHhc-CCCCCEE---EEcccc
Confidence 4455655 78898775 56699999999999 99999999999886421 11122111 2234543 478998
Q ss_pred cc
Q psy207 105 GL 106 (109)
Q Consensus 105 gl 106 (109)
+.
T Consensus 250 ~~ 251 (400)
T PTZ00125 250 SG 251 (400)
T ss_pred cC
Confidence 75
No 155
>PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional
Probab=97.52 E-value=0.00012 Score=56.89 Aligned_cols=60 Identities=18% Similarity=0.228 Sum_probs=38.4
Q ss_pred ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccc-cccCCChhhhHHHHHHhHHhC-CcEEEEechhhhh
Q psy207 37 SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQ-GFASGDLERDAFAVRYFAQEG-FEFLCSQSFAKNF 104 (109)
Q Consensus 37 ~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~-gf~~g~~~~d~~~l~~~~~~~-~~~~v~~SfSK~f 104 (109)
|++|. .+.+++|+++++++ ++++|+|++|. |+...+. .. ....+ ... ...+++.||||.|
T Consensus 185 ~~~G~---~~~~~~l~~la~~~-~~~li~De~~~~g~~~~~~-~~--~~~~~-~~~~~~~i~~~S~sK~~ 246 (397)
T PRK06939 185 SMDGD---IAPLPEICDLADKY-DALVMVDDSHAVGFVGENG-RG--TVEHF-GVMDRVDIITGTLGKAL 246 (397)
T ss_pred CCCCC---cCCHHHHHHHHHHh-CCEEEEECcccccCcCCCC-CC--HHHHc-CCCCCCcEEEEECHHHh
Confidence 45554 35688899999999 99999999995 4432110 11 11111 111 2358899999999
No 156
>TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase. This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases.
Probab=97.51 E-value=0.00018 Score=57.15 Aligned_cols=60 Identities=23% Similarity=0.298 Sum_probs=43.3
Q ss_pred CCCCCC-HHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhhccCC
Q psy207 39 GGCDPT-EDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNFGLYS 108 (109)
Q Consensus 39 ~~~~lt-~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~fglyg 108 (109)
+|..++ ++.|++|.++++++ ++++|+||+|.||..|. . .....+ ...+++ .||||.+| .|
T Consensus 208 ~G~~~~~~~~l~~l~~l~~~~-~~llI~DEv~~g~r~g~---~-~~~~~~-~~~pDi---~t~sK~l~-~G 268 (423)
T TIGR00713 208 MGVVPPKPEFLAGLRALTEEY-GSLLIFDEVMTGFRVAL---G-GAQEYF-GVEPDL---TTLGKIIG-GG 268 (423)
T ss_pred CCCcCCCHHHHHHHHHHHHHh-CCEEEEEccccccccCc---c-hhHHHh-CCCcch---hhhhhhhc-CC
Confidence 465555 69999999999999 99999999999996652 1 122222 233453 37999998 55
No 157
>PRK05937 8-amino-7-oxononanoate synthase; Provisional
Probab=97.50 E-value=0.00027 Score=55.36 Aligned_cols=64 Identities=19% Similarity=0.151 Sum_probs=41.0
Q ss_pred ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHH-HHhHHhCCcEEEEechhhhhccCC
Q psy207 37 SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAV-RYFAQEGFEFLCSQSFAKNFGLYS 108 (109)
Q Consensus 37 ~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l-~~~~~~~~~~~v~~SfSK~fglyg 108 (109)
|++|.... +++|.++++++ ++++++|+||.--..|. +...+ ..+. .....++..||||.||..|
T Consensus 154 s~~G~i~p---l~eI~~l~~~~-~~~livDea~~~G~~g~---~g~g~~~~~~-~~~~~~~~~tlsK~~g~~G 218 (370)
T PRK05937 154 SFKGTLAP---LEQIIALSKKY-HAHLIVDEAHAMGIFGD---DGKGFCHSLG-YENFYAVLVTYSKALGSMG 218 (370)
T ss_pred CCCCCccC---HHHHHHHHHHc-CCEEEEECCccccccCC---CCCchHHhhC-CCCCcEEEEechhhhhcCc
Confidence 77887776 66777778888 99999999997311121 11111 1111 1122367899999999876
No 158
>KOG0258|consensus
Probab=97.49 E-value=0.00024 Score=57.62 Aligned_cols=77 Identities=13% Similarity=0.194 Sum_probs=57.6
Q ss_pred CCCCCCeeee----ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCC---hhhhHHHHHHhHH---hCCcEEE
Q psy207 27 DDPHPKKVNL----SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGD---LERDAFAVRYFAQ---EGFEFLC 96 (109)
Q Consensus 27 ~d~~~~kv~L----~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~---~~~d~~~l~~~~~---~~~~~~v 96 (109)
+..+++...+ ||||..+++|-+++|+.+++++ +++++-||.||+-.+.+ +-.-...++.+-+ ....++-
T Consensus 212 k~i~~r~lvvINPGNPTGqvls~e~ie~i~~fa~~~-~l~llaDEVYQ~Nvy~~~skFhSfKKvl~emg~~~~~~v~L~S 290 (475)
T KOG0258|consen 212 KGINPRALVVINPGNPTGQVLSEENIEGIICFAAEE-GLVLLADEVYQDNVYTTGSKFHSFKKVLHEMGNPYPDNVSLAS 290 (475)
T ss_pred ccCCceEEEEECCCCccchhhcHHHHHHHHHHHHHc-CeEEechHHHHhhccCCCcchHhHHHHHHHhcCccCCceEEEe
Confidence 5556665555 9999999999999999999999 99999999999977653 1111233333331 2457888
Q ss_pred Eechhhhh
Q psy207 97 SQSFAKNF 104 (109)
Q Consensus 97 ~~SfSK~f 104 (109)
.+|-||++
T Consensus 291 fhSvSKGy 298 (475)
T KOG0258|consen 291 FHSVSKGY 298 (475)
T ss_pred eecccccc
Confidence 89999976
No 159
>PLN02624 ornithine-delta-aminotransferase
Probab=97.48 E-value=0.00045 Score=56.45 Aligned_cols=64 Identities=16% Similarity=0.200 Sum_probs=44.7
Q ss_pred ccCCCCCCHHH-HHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhhccCC
Q psy207 37 SVGGCDPTEDQ-WKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNFGLYS 108 (109)
Q Consensus 37 ~~~~~~lt~eq-w~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~fglyg 108 (109)
|++|..+++++ |++|.++++++ ++++++||+|.||+... ..+..... ...+.+++ |||.+|..+
T Consensus 235 ~~~G~v~p~~~~L~~l~~lc~~~-gillI~DEv~tG~GrtG---~~~a~~~~-~i~pDiv~---lsK~lggG~ 299 (474)
T PLN02624 235 GEAGVVIPPDGYLKAVRELCSKH-NVLMIADEIQTGLARTG---KMLACDWE-EVRPDVVI---LGKALGGGV 299 (474)
T ss_pred CCCCCcCCCHHHHHHHHHHHHHc-CCEEEEeccccCcCcCc---chhhHHhc-CCCCCEEE---ecccccCCC
Confidence 88898877664 99999999999 99999999999986321 11122111 22344343 699998643
No 160
>cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface.
Probab=97.47 E-value=0.00013 Score=56.64 Aligned_cols=64 Identities=19% Similarity=0.195 Sum_probs=43.3
Q ss_pred CCCeeee----ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhhc
Q psy207 30 HPKKVNL----SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNFG 105 (109)
Q Consensus 30 ~~~kv~L----~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~fg 105 (109)
.++.|.+ ||+|. ..++++|+++++++ ++++++|+||.. |..+.+. . +.+ .-+++.|+||+++
T Consensus 139 ~~~lv~l~~p~n~tG~---~~~~~~i~~~~~~~-~~~vivD~a~~~---g~~~~~~---~---~~~-~d~~~~s~~K~l~ 204 (361)
T cd06452 139 PPALALLTHVDGNYGN---LHDAKKIAKVCHEY-GVPLLLNGAYTV---GRMPVSG---K---ELG-ADFIVGSGHKSMA 204 (361)
T ss_pred CceEEEEECCCCCCee---eccHHHHHHHHHHc-CCeEEEECCccc---CCcCCCH---H---HcC-CCEEEecCCcccc
Confidence 4556666 45664 46788899999999 999999999973 2111111 1 112 3478999999998
Q ss_pred cC
Q psy207 106 LY 107 (109)
Q Consensus 106 ly 107 (109)
.-
T Consensus 205 ~~ 206 (361)
T cd06452 205 AS 206 (361)
T ss_pred CC
Confidence 53
No 161
>PRK13393 5-aminolevulinate synthase; Provisional
Probab=97.46 E-value=0.00032 Score=55.48 Aligned_cols=64 Identities=14% Similarity=0.187 Sum_probs=41.6
Q ss_pred ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccc-cccCCChhhhHHHHHHhHHhCC-cEEEEechhhhhccCC
Q psy207 37 SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQ-GFASGDLERDAFAVRYFAQEGF-EFLCSQSFAKNFGLYS 108 (109)
Q Consensus 37 ~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~-gf~~g~~~~d~~~l~~~~~~~~-~~~v~~SfSK~fglyg 108 (109)
|++|...+ +++|.++++++ ++++++|+||. |+. |...... .... .... ..++..||||.||+.|
T Consensus 188 ~~~G~~~~---l~~i~~l~~~~-~~~livDea~~~g~~-g~~G~g~--~~~~-~~~~~~~i~~~tlsKa~g~~G 253 (406)
T PRK13393 188 SMDGDIAP---IAEICDVAEKH-GAMTYLDEVHAVGLY-GPRGGGI--AERE-GLADRLTIIEGTLAKAFGVMG 253 (406)
T ss_pred CCCCchhC---HHHHHHHHHHc-CCEEEEECCcccccc-CCCCCch--hhhc-CCCCCCeEEEEeCchhhcccC
Confidence 67777666 77788888899 99999999986 652 2110111 1111 1111 2577799999999865
No 162
>PRK07811 cystathionine gamma-synthase; Provisional
Probab=97.46 E-value=0.00022 Score=56.68 Aligned_cols=64 Identities=17% Similarity=0.131 Sum_probs=45.2
Q ss_pred CCCCeeee----ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhh
Q psy207 29 PHPKKVNL----SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNF 104 (109)
Q Consensus 29 ~~~~kv~L----~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~f 104 (109)
++++.|.+ ||+| +..++++|+++++++ ++++++|++|.....+. .+. .+.. +++.|+||.+
T Consensus 145 ~~tklV~ie~p~NPtg---~~~dl~~I~~la~~~-gi~lIvD~a~a~~~~~~------p~~----~gaD-ivv~S~sK~l 209 (388)
T PRK07811 145 PRTKLIWVETPTNPLL---SITDIAALAELAHDA-GAKVVVDNTFASPYLQQ------PLA----LGAD-VVVHSTTKYI 209 (388)
T ss_pred cCCeEEEEECCCCCcc---eecCHHHHHHHHHHc-CCEEEEECCCCccccCC------chh----hCCc-EEEecCceee
Confidence 35667766 5665 557788888888899 99999999997554332 121 2223 7899999999
Q ss_pred ccC
Q psy207 105 GLY 107 (109)
Q Consensus 105 gly 107 (109)
|-.
T Consensus 210 ~g~ 212 (388)
T PRK07811 210 GGH 212 (388)
T ss_pred cCC
Confidence 853
No 163
>PRK06777 4-aminobutyrate aminotransferase; Provisional
Probab=97.42 E-value=0.00034 Score=56.20 Aligned_cols=63 Identities=24% Similarity=0.434 Sum_probs=45.8
Q ss_pred ccCCC-CCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhhccCC
Q psy207 37 SVGGC-DPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNFGLYS 108 (109)
Q Consensus 37 ~~~~~-~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~fglyg 108 (109)
+.+|. .++++.|++|.++++++ ++++|+||+|.||.... ..++...+ ...+.++ +|||.+| -|
T Consensus 209 ~~~G~~~~~~~~l~~l~~lc~~~-g~llI~DEv~tg~gr~g---~~~~~~~~-~~~pDiv---~~sK~l~-~G 272 (421)
T PRK06777 209 GEGGFNVAPPEFMSALRTLCDEH-GILLIADEVQTGFARTG---KLFAMEYY-DVKPDLI---TMAKSLG-GG 272 (421)
T ss_pred CCCCCccCCHHHHHHHHHHHHHc-CCEEEEechhhCCccCC---chhhhhhc-CCCCCEE---eeehhhc-CC
Confidence 55665 58999999999999999 99999999999996432 12233333 2334533 7999998 44
No 164
>PRK07269 cystathionine gamma-synthase; Reviewed
Probab=97.42 E-value=0.00021 Score=56.50 Aligned_cols=62 Identities=13% Similarity=0.126 Sum_probs=42.7
Q ss_pred CCCCeeee----ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhh
Q psy207 29 PHPKKVNL----SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNF 104 (109)
Q Consensus 29 ~~~~kv~L----~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~f 104 (109)
++++.|.+ ||+|... ++++|+++++++ ++++++|++|..-..+. .+. .+.. ++++|++|.+
T Consensus 135 ~~TklV~lesP~NPtg~~~---di~~I~~la~~~-gi~vvvD~t~~~~~~~~------pl~----~gaD-ivv~S~tK~l 199 (364)
T PRK07269 135 EDTDIVYIETPTNPLMVEF---DIEKVAKLAHAK-GAKVIVDNTFYSPIYQR------PIE----LGAD-IVLHSATKYL 199 (364)
T ss_pred cCceEEEEECCCCCCCeee---CHHHHHHHHHHc-CCEEEEECCCcccccCC------chh----hCCc-EEEecCceec
Confidence 45677766 7777655 677788888899 99999999963222121 222 2222 7899999999
Q ss_pred c
Q psy207 105 G 105 (109)
Q Consensus 105 g 105 (109)
|
T Consensus 200 ~ 200 (364)
T PRK07269 200 S 200 (364)
T ss_pred c
Confidence 7
No 165
>PRK08064 cystathionine beta-lyase; Provisional
Probab=97.42 E-value=0.00026 Score=56.36 Aligned_cols=62 Identities=15% Similarity=0.077 Sum_probs=43.7
Q ss_pred CCCCeeee----ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhh
Q psy207 29 PHPKKVNL----SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNF 104 (109)
Q Consensus 29 ~~~~kv~L----~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~f 104 (109)
++++.|.+ ||+|...+ +++|.++++++ ++++++|++|..+.... .+ +.+. -++++|+||.+
T Consensus 137 ~~tklV~l~~p~NptG~~~d---l~~I~~la~~~-g~~vvvD~a~~~~~~~~------~~----~~g~-Divv~S~tK~~ 201 (390)
T PRK08064 137 PNTKLFYVETPSNPLLKVTD---IRGVVKLAKAI-GCLTFVDNTFLTPLLQK------PL----DLGA-DVVLHSATKFL 201 (390)
T ss_pred CCceEEEEECCCCCCcEecc---HHHHHHHHHHc-CCEEEEECCCCcccccC------ch----hhCC-cEEEeecceec
Confidence 35567776 88887764 56777778888 99999999987654321 11 1233 36789999998
Q ss_pred c
Q psy207 105 G 105 (109)
Q Consensus 105 g 105 (109)
+
T Consensus 202 ~ 202 (390)
T PRK08064 202 A 202 (390)
T ss_pred c
Confidence 6
No 166
>TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA.
Probab=97.41 E-value=0.00032 Score=54.96 Aligned_cols=65 Identities=18% Similarity=0.157 Sum_probs=42.9
Q ss_pred CCCeeee----ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhhc
Q psy207 30 HPKKVNL----SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNFG 105 (109)
Q Consensus 30 ~~~kv~L----~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~fg 105 (109)
.++.|.+ ||+|. ...+++|+++++++ +.++++|+||.....+ .+. . +.+..++ +.||||+||
T Consensus 146 ~~~lv~~~~p~~~~G~---~~~l~~i~~la~~~-~~~livDea~~~g~~~---~~~--~----~~~~di~-v~s~sK~~~ 211 (370)
T TIGR02539 146 PPVLALLTHVDGEYGN---LPDAGKVAKVCREK-GVPLLLNCAYTVGRMP---VSA--K----EIGADFI-VGSGHKSMA 211 (370)
T ss_pred CcEEEEEECCCCCCcc---ccCHHHHHHHHHHc-CCeEEEECccccCCcC---CCH--H----HcCCCEE-EeeCccccc
Confidence 3456665 55665 45566788888899 9999999999864322 121 1 2234554 599999998
Q ss_pred cCC
Q psy207 106 LYS 108 (109)
Q Consensus 106 lyg 108 (109)
..|
T Consensus 212 ~~g 214 (370)
T TIGR02539 212 ASG 214 (370)
T ss_pred CCC
Confidence 643
No 167
>TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase. This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function.
Probab=97.41 E-value=0.00044 Score=53.92 Aligned_cols=69 Identities=16% Similarity=0.231 Sum_probs=42.4
Q ss_pred CCCeeee----ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccc-cccCCChhhhHHHHHHhHHhCCcEEEEechhhhh
Q psy207 30 HPKKVNL----SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQ-GFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNF 104 (109)
Q Consensus 30 ~~~kv~L----~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~-gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~f 104 (109)
.++.|.+ ||||...+ +++|+++++++ ++++++|++|. |+..... .. ......-.....+++.||||.+
T Consensus 170 ~~~~v~~~~v~~~tG~~~~---l~~i~~la~~~-~~~li~De~~~~g~~~~~~-~~--~~~~~~~~~~~di~~~s~sK~l 242 (393)
T TIGR01822 170 RHRLIATDGVFSMDGVIAP---LDEICDLADKY-DALVMVDECHATGFLGPTG-RG--SHELCGVMGRVDIITGTLGKAL 242 (393)
T ss_pred CceEEEEeCCccCCCCcCC---HHHHHHHHHHc-CCEEEEECCccccCcCCCC-Cc--hHHhcCCCCCCeEEEEEChHHh
Confidence 3444554 78887654 67788888899 99999999993 4431110 11 1111110112347888999998
Q ss_pred c
Q psy207 105 G 105 (109)
Q Consensus 105 g 105 (109)
|
T Consensus 243 ~ 243 (393)
T TIGR01822 243 G 243 (393)
T ss_pred h
Confidence 6
No 168
>PRK07671 cystathionine beta-lyase; Provisional
Probab=97.38 E-value=0.00041 Score=55.06 Aligned_cols=62 Identities=18% Similarity=0.200 Sum_probs=42.8
Q ss_pred CCCCeeee----ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhh
Q psy207 29 PHPKKVNL----SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNF 104 (109)
Q Consensus 29 ~~~~kv~L----~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~f 104 (109)
++++.|.+ ||+|.. .++++|.++++++ ++++++|++|.....+. .+ +.+. -++++|+||.+
T Consensus 133 ~~tklV~le~P~NPtg~~---~dl~~I~~la~~~-g~~lvvD~a~~~~~~~~------p~----~~g~-Divv~S~sK~l 197 (377)
T PRK07671 133 PNTKAIYVETPTNPLLKI---TDIKKISTIAKEK-GLLTIVDNTFMTPYWQS------PI----SLGA-DIVLHSATKYL 197 (377)
T ss_pred CCCeEEEEECCCCCCCcc---cCHHHHHHHHHHc-CCEEEEECCCCccccCC------hh----hhCC-eEEEecCcccc
Confidence 35566666 777765 4566777778888 99999999986533221 12 2222 38899999999
Q ss_pred c
Q psy207 105 G 105 (109)
Q Consensus 105 g 105 (109)
|
T Consensus 198 ~ 198 (377)
T PRK07671 198 G 198 (377)
T ss_pred c
Confidence 7
No 169
>PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=97.37 E-value=0.0006 Score=55.07 Aligned_cols=65 Identities=15% Similarity=0.116 Sum_probs=45.8
Q ss_pred CCCCeeee----ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhh
Q psy207 29 PHPKKVNL----SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNF 104 (109)
Q Consensus 29 ~~~~kv~L----~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~f 104 (109)
++++.|.+ ||+|..++ +++|.++++++ ++++|+|++|....... .+ +.+.. +++.|++|.+
T Consensus 142 ~~tklV~lesp~NPtG~v~d---l~~I~~la~~~-~i~vVvD~a~a~~~~~~------p~----~~gaD-ivv~S~tK~l 206 (425)
T PRK06084 142 ERTKAVFCESIGNPAGNIID---IQALADAAHRH-GVPLIVDNTVATPVLCR------PF----EHGAD-IVVHSLTKYI 206 (425)
T ss_pred cCCcEEEEeCCCCCCCeecC---HHHHHHHHHHc-CCEEEEECCCcccccCC------hh----hcCCC-EEEECchhcc
Confidence 35666776 89998887 56777778889 99999999996332221 12 22333 7899999999
Q ss_pred ccCC
Q psy207 105 GLYS 108 (109)
Q Consensus 105 glyg 108 (109)
|..|
T Consensus 207 ~G~g 210 (425)
T PRK06084 207 GGHG 210 (425)
T ss_pred cccc
Confidence 8654
No 170
>PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional
Probab=97.36 E-value=0.00047 Score=54.82 Aligned_cols=67 Identities=16% Similarity=0.210 Sum_probs=45.3
Q ss_pred CCeeee---ccCCCC--CCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhhc
Q psy207 31 PKKVNL---SVGGCD--PTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNFG 105 (109)
Q Consensus 31 ~~kv~L---~~~~~~--lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~fg 105 (109)
...|.+ +++|.. ++++.|++|.++++++ ++++|+||+|.||.... ..++...+ ...+++ .||||++|
T Consensus 184 ~aaviiEPv~~~gg~~~~~~~~l~~l~~l~~~~-~~llI~DEv~tG~gr~G---~~~~~~~~-~v~pDi---~t~sK~l~ 255 (406)
T PRK12381 184 TCAVIVEPIQGEGGVIPADKAFLQGLRELCDRH-NALLIFDEVQTGVGRTG---ELYAYMHY-GVTPDV---LTTAKALG 255 (406)
T ss_pred eeEEEEeCCcCCCCCcCCCHHHHHHHHHHHHHc-CCEEEEcchhhCCCCCc---chhhhHhh-CCCCCE---EEehhhhh
Confidence 334444 444433 4899999999999999 99999999999995432 12222222 223443 49999997
No 171
>TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.
Probab=97.33 E-value=0.00047 Score=55.19 Aligned_cols=63 Identities=21% Similarity=0.241 Sum_probs=43.6
Q ss_pred ccCCCC-CCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhhccCC
Q psy207 37 SVGGCD-PTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNFGLYS 108 (109)
Q Consensus 37 ~~~~~~-lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~fglyg 108 (109)
+-+|.. ++++.|++|.++++++ ++++|+||+|.||.... ..++...+ ...+.+ .+|||.+| .|
T Consensus 208 g~~G~~~~~~~~l~~l~~lc~~~-gillI~DEV~tg~gr~g---~~~a~~~~-~~~pDi---~~lsK~l~-~G 271 (420)
T TIGR00700 208 GEGGFIVPAKGFVPALLDWCREH-GIVFIADEVQTGFARTG---AMFACEHE-GPEPDL---ITTAKSLA-DG 271 (420)
T ss_pred CCCCCccCCHHHHHHHHHHHHHc-CCEEEEEecccCCcccc---hhHHHhhc-CCCCCE---EEeecccc-CC
Confidence 445554 5666699999999999 99999999999996432 12233322 233553 35999998 44
No 172
>TIGR00709 dat 2,4-diaminobutyrate 4-transaminases. This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase.
Probab=97.31 E-value=0.00069 Score=54.78 Aligned_cols=61 Identities=16% Similarity=0.302 Sum_probs=46.5
Q ss_pred ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccC-CChhhhHHHHHHhHHhCCcEEEEechhhhhcc
Q psy207 37 SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFAS-GDLERDAFAVRYFAQEGFEFLCSQSFAKNFGL 106 (109)
Q Consensus 37 ~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~-g~~~~d~~~l~~~~~~~~~~~v~~SfSK~fgl 106 (109)
+++...++++.|+++.++++++ ++++|+||+|.||.. |. .++...+ ...+.+++ |||.+|.
T Consensus 218 ~~G~~~~~~~yl~~lr~lc~~~-g~llI~DEV~tGfGRtG~----~~a~~~~-gv~PDiv~---~gK~l~~ 279 (442)
T TIGR00709 218 EGGVVAAPSEWLQKIREVTRKH-DIKLILDEVQAGFGRSGT----MFAFEHA-GIEPDFVV---MSKAVGG 279 (442)
T ss_pred CCCCccCCHHHHHHHHHHHHHc-CCEEEEeccccCCCCCCc----hhHHHHc-CCCCcEEE---EcccccC
Confidence 4445568999999999999999 999999999999974 42 3344443 34466555 8999886
No 173
>TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis.
Probab=97.30 E-value=0.00053 Score=54.29 Aligned_cols=65 Identities=17% Similarity=0.131 Sum_probs=44.5
Q ss_pred CCCCeeee----ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhh
Q psy207 29 PHPKKVNL----SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNF 104 (109)
Q Consensus 29 ~~~~kv~L----~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~f 104 (109)
++++.|.+ ||+|... ++++|.++++++ ++++++|++|..+.... .+ +.+.. +++.|+||.+
T Consensus 138 ~~tklV~le~p~np~g~~~---dl~~I~~la~~~-gi~livD~a~~~~~~~~------pl----~~g~D-ivv~S~sK~l 202 (380)
T TIGR01325 138 PNTKLVFVETPSNPLGELV---DIAALAELAHAI-GALLVVDNVFATPVLQQ------PL----KLGAD-VVVYSATKHI 202 (380)
T ss_pred CCceEEEEECCCCCCCeee---CHHHHHHHHHHc-CCEEEEECCCcccccCC------ch----hhCCC-EEEeecccee
Confidence 35666666 6666655 567788888899 99999999997544221 12 22334 6677999999
Q ss_pred ccCC
Q psy207 105 GLYS 108 (109)
Q Consensus 105 glyg 108 (109)
|..|
T Consensus 203 ~g~g 206 (380)
T TIGR01325 203 DGQG 206 (380)
T ss_pred cCCC
Confidence 7543
No 174
>PRK05939 hypothetical protein; Provisional
Probab=97.30 E-value=0.00072 Score=54.15 Aligned_cols=64 Identities=19% Similarity=0.224 Sum_probs=45.7
Q ss_pred CCCCeeee----ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccc-cccCCChhhhHHHHHHhHHhCCcEEEEechhhh
Q psy207 29 PHPKKVNL----SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQ-GFASGDLERDAFAVRYFAQEGFEFLCSQSFAKN 103 (109)
Q Consensus 29 ~~~~kv~L----~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~-gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~ 103 (109)
++++.|.+ ||+|.. .++++|+++++++ ++++++|++|. +.... .. +.+ --+++.|+||.
T Consensus 130 ~~tklV~vesp~NptG~v---~dl~~I~~la~~~-gi~livD~t~a~~~~~~-------~~----~~g-aDivv~S~sK~ 193 (397)
T PRK05939 130 PNTRMVFVETIANPGTQV---ADLAGIGALCRER-GLLYVVDNTMTSPWLFR-------PK----DVG-ASLVINSLSKY 193 (397)
T ss_pred CCCeEEEEECCCCCCCCH---HhHHHHHHHHHHc-CCEEEEECCcccccccC-------cc----ccC-CEEEEecCeec
Confidence 45666766 677755 6799999999999 99999999974 22111 11 122 34789999999
Q ss_pred hccCC
Q psy207 104 FGLYS 108 (109)
Q Consensus 104 fglyg 108 (109)
||..|
T Consensus 194 ~~g~g 198 (397)
T PRK05939 194 IAGHG 198 (397)
T ss_pred ccCCC
Confidence 99755
No 175
>PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional
Probab=97.29 E-value=0.00085 Score=51.96 Aligned_cols=66 Identities=24% Similarity=0.291 Sum_probs=44.2
Q ss_pred CCCCeeee----ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhh-
Q psy207 29 PHPKKVNL----SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKN- 103 (109)
Q Consensus 29 ~~~~kv~L----~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~- 103 (109)
+..+.|.+ ||||...+ +++|+++++++ +.++++| +|+.|+...+ | +.+.+..+++ .|++|.
T Consensus 130 ~~~~~v~~~~~~~~tG~~~~---~~~i~~l~~~~-~~~livD-a~~~~g~~~~--~------~~~~~~d~~v-~s~~K~l 195 (368)
T PRK13479 130 PRITHVALVHCETTTGILNP---LDEIAAVAKRH-GKRLIVD-AMSSFGAIPI--D------IAELGIDALI-SSANKCI 195 (368)
T ss_pred CCCcEEEEEcccCccccccC---HHHHHHHHHHc-CCEEEEE-cccccCCccc--c------ccccCceEEE-ecCcccc
Confidence 33445555 78998877 45777778899 8999999 8898853221 1 1123456665 588886
Q ss_pred hccCC
Q psy207 104 FGLYS 108 (109)
Q Consensus 104 fglyg 108 (109)
+|..|
T Consensus 196 ~g~~G 200 (368)
T PRK13479 196 EGVPG 200 (368)
T ss_pred ccCCC
Confidence 47776
No 176
>PRK07179 hypothetical protein; Provisional
Probab=97.28 E-value=0.00051 Score=54.30 Aligned_cols=63 Identities=17% Similarity=0.099 Sum_probs=40.8
Q ss_pred ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCc-EEEEechhhhhcc
Q psy207 37 SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFE-FLCSQSFAKNFGL 106 (109)
Q Consensus 37 ~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~-~~v~~SfSK~fgl 106 (109)
||||...+ +++|.++++++ ++++++|++|.....|. .....+..+ ..... -+++.|+||.+|.
T Consensus 192 n~tG~i~p---l~~I~~l~~~~-~~~livDea~~~g~~g~--~g~g~~~~~-~~~~~vdi~~~S~sK~~g~ 255 (407)
T PRK07179 192 STTGTIAP---LADIVDIAEEF-GCVLVVDESHSLGTHGP--QGAGLVAEL-GLTSRVHFITASLAKAFAG 255 (407)
T ss_pred CCCCcccc---HHHHHHHHHHc-CCEEEEECcccccCcCC--CCCchHHhc-CCCCCCCEEEeechHhhhc
Confidence 88998887 56777888899 99999999986432231 011012111 11122 3789999999984
No 177
>TIGR03246 arg_catab_astC succinylornithine transaminase family. Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason.
Probab=97.28 E-value=0.00051 Score=54.46 Aligned_cols=67 Identities=19% Similarity=0.266 Sum_probs=44.9
Q ss_pred CCeeee----ccCCCC-CCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhhc
Q psy207 31 PKKVNL----SVGGCD-PTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNFG 105 (109)
Q Consensus 31 ~~kv~L----~~~~~~-lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~fg 105 (109)
...|.+ +.+|.. ++++.|++|.++++++ ++++|+||+|.||+... ..++...+ ...+.+ .||||.+|
T Consensus 180 ~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~-g~llI~DEv~tG~Gr~G---~~~a~~~~-gv~pDi---~t~~K~lg 251 (397)
T TIGR03246 180 TCAVIVEPIQGEGGVVPADPAFLKGLRELCDRH-NALLIFDEVQTGVGRTG---ELYAYMHY-GVTPDI---LTSAKALG 251 (397)
T ss_pred eEEEEEecccCCCCCcCCCHHHHHHHHHHHHHc-CCEEEEechhhcCCccc---cchhhhhc-CCCCCE---EEeehhhh
Confidence 344555 444543 4899999999999999 99999999999994321 11122222 123443 37999986
No 178
>TIGR01979 sufS cysteine desulfurases, SufS subfamily. This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved.
Probab=97.28 E-value=0.00058 Score=53.50 Aligned_cols=66 Identities=20% Similarity=0.107 Sum_probs=45.1
Q ss_pred CCCCeeee----ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhh
Q psy207 29 PHPKKVNL----SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNF 104 (109)
Q Consensus 29 ~~~~kv~L----~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~f 104 (109)
+.++.|.+ ||||...+ +++|.++++++ ++++++|.+|.. |..+-|. .+.+. -+++.|++|.+
T Consensus 158 ~~~~lv~~~~~~~~tG~~~~---~~~i~~~~~~~-~~~~ivD~a~~~---g~~~~~~------~~~~~-d~~~~s~~K~~ 223 (403)
T TIGR01979 158 EKTKLVAITHVSNVLGTVNP---VEEIAKLAHQV-GAKVLVDGAQAV---PHMPVDV------QALDC-DFYVFSGHKMY 223 (403)
T ss_pred cCCeEEEEEcccccccccCC---HHHHHHHHHHc-CCEEEEEchhhc---CccccCc------cccCC-CEEEEeccccc
Confidence 34555666 88998887 55677778889 999999999843 2111121 12233 36788999999
Q ss_pred ccCC
Q psy207 105 GLYS 108 (109)
Q Consensus 105 glyg 108 (109)
|..|
T Consensus 224 gp~G 227 (403)
T TIGR01979 224 GPTG 227 (403)
T ss_pred CCCC
Confidence 9876
No 179
>KOG1412|consensus
Probab=97.26 E-value=9.8e-05 Score=58.57 Aligned_cols=41 Identities=41% Similarity=0.703 Sum_probs=38.1
Q ss_pred cccccCCccCCCChhhchhhhhcCCCCCCeeeeccCCCCCC
Q psy207 4 ESSFSSVQQGPPIEVFAVNKAYLDDPHPKKVNLSVGGCDPT 44 (109)
Q Consensus 4 ~s~f~~v~~~p~d~~f~l~~~~~~d~~~~kv~L~~~~~~lt 44 (109)
.|+|++||.+||+++|.+++.|..|..|.||+|+.+.+..+
T Consensus 3 ~s~f~~I~~a~p~~vf~~~~~y~~d~~p~KvnL~igAYRtd 43 (410)
T KOG1412|consen 3 MSFFANIPVAPPIEVFKLNASYGEDLDPVKVNLGIGAYRTD 43 (410)
T ss_pred cchhcCCccCChHHHHhhHHHhcccCCcceeecccceEEcC
Confidence 57899999999999999999999999999999999988654
No 180
>PRK09792 4-aminobutyrate transaminase; Provisional
Probab=97.25 E-value=0.0006 Score=54.78 Aligned_cols=61 Identities=21% Similarity=0.377 Sum_probs=46.6
Q ss_pred ccCCCCC-CHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhhc
Q psy207 37 SVGGCDP-TEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNFG 105 (109)
Q Consensus 37 ~~~~~~l-t~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~fg 105 (109)
+++|+.+ +++.|++|.++++++ ++++|+||+|.||.... ..++...+- ..+. +.||||.+|
T Consensus 209 ~~~G~~~~~~~~l~~l~~lc~~~-g~llI~DEv~tg~gr~G---~~~a~~~~~-~~pD---i~t~gK~l~ 270 (421)
T PRK09792 209 GEGGFNVAPKELVAAIRRLCDEH-GIVMIADEVQSGFARTG---KLFAMDHYA-DKPD---LMTMAKSLA 270 (421)
T ss_pred CCCCCccCCHHHHHHHHHHHHHc-CCEEEEeccccCCCCCC---chhHHHhcC-CCCc---EEEeehhhc
Confidence 7888765 999999999999999 99999999999996432 223444442 2344 578999987
No 181
>TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase. This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different.
Probab=97.23 E-value=0.00066 Score=51.72 Aligned_cols=58 Identities=14% Similarity=0.198 Sum_probs=38.8
Q ss_pred ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhh-ccCC
Q psy207 37 SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNF-GLYS 108 (109)
Q Consensus 37 ~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~f-glyg 108 (109)
|++|...+ +++|+++++++ +.++++|. |+.|..-. -+ + .+.+.. +++.|+||.+ |+.|
T Consensus 136 ~~~G~~~~---~~~i~~l~~~~-~~~livD~-~~s~g~~~--~~---~---~~~~~d-~~~~s~~K~l~~~~G 194 (355)
T TIGR03301 136 TTTGILNP---LEAIAKVARSH-GAVLIVDA-MSSFGAIP--ID---I---EELDVD-ALIASANKCLEGVPG 194 (355)
T ss_pred CcccchhH---HHHHHHHHHHc-CCEEEEEe-ccccCCcc--cc---h---hhcCcc-EEEecCCcccccCCc
Confidence 57777654 67888888899 99999995 66664211 11 1 122333 5689999986 6766
No 182
>PRK08776 cystathionine gamma-synthase; Provisional
Probab=97.22 E-value=0.00062 Score=54.63 Aligned_cols=64 Identities=16% Similarity=0.100 Sum_probs=44.7
Q ss_pred CCCCeeee----ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhh
Q psy207 29 PHPKKVNL----SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNF 104 (109)
Q Consensus 29 ~~~~kv~L----~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~f 104 (109)
++++.|.+ ||+|... ++++|+++++++ ++++++|++|..-. .. . .+ +.+.. +++.|.+|++
T Consensus 144 ~~tklV~l~~P~NPtG~v~---dl~~I~~la~~~-gi~vIvD~a~a~~~---~~-~--pl----~~gaD-ivv~S~tK~l 208 (405)
T PRK08776 144 QSPKLVLIETPSNPLLRIT---DLRFVIEAAHKV-GALTVVDNTFLSPA---LQ-K--PL----EFGAD-LVLHSTTKYI 208 (405)
T ss_pred cCCeEEEEECCCCCCCccC---CHHHHHHHHHHc-CCEEEEECCCcccc---cC-C--cc----cccCC-EEEecCceee
Confidence 45667776 8898874 567788888899 99999999996421 11 1 12 12323 7789999999
Q ss_pred ccC
Q psy207 105 GLY 107 (109)
Q Consensus 105 gly 107 (109)
|-.
T Consensus 209 ~g~ 211 (405)
T PRK08776 209 NGH 211 (405)
T ss_pred cCC
Confidence 743
No 183
>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis. This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.
Probab=97.22 E-value=0.00098 Score=52.38 Aligned_cols=63 Identities=16% Similarity=0.082 Sum_probs=43.8
Q ss_pred CCCeeee----ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhhc
Q psy207 30 HPKKVNL----SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNFG 105 (109)
Q Consensus 30 ~~~kv~L----~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~fg 105 (109)
+++.|.+ ||+|...+ +++|+++++++ ++++++|++|....... .+ +.+. -+++.|+||.+|
T Consensus 125 ~~~~v~~e~~~np~g~~~d---l~~i~~la~~~-g~~livD~t~~~~~~~~------~~----~~g~-Divv~S~tK~l~ 189 (369)
T cd00614 125 ETKLVYVESPTNPTLKVVD---IEAIAELAHEH-GALLVVDNTFATPYLQR------PL----ELGA-DIVVHSATKYIG 189 (369)
T ss_pred CCeEEEEECCCCCCCeecC---HHHHHHHHHHc-CCEEEEECCCcchhcCC------hh----hhCC-cEEEeccceecc
Confidence 5666666 77776655 67888888899 99999999986433211 12 2232 367899999998
Q ss_pred cC
Q psy207 106 LY 107 (109)
Q Consensus 106 ly 107 (109)
..
T Consensus 190 g~ 191 (369)
T cd00614 190 GH 191 (369)
T ss_pred CC
Confidence 54
No 184
>PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional
Probab=97.20 E-value=0.00048 Score=56.26 Aligned_cols=38 Identities=13% Similarity=0.147 Sum_probs=33.0
Q ss_pred CCeeee----ccCC-CCCCHHHHHHHHHHHHhCCCcEEEEeccc
Q psy207 31 PKKVNL----SVGG-CDPTEDQWKQLAQLFKERPSLFVFFDSAY 69 (109)
Q Consensus 31 ~~kv~L----~~~~-~~lt~eqw~~i~~~~~~~p~~~~~~D~AY 69 (109)
++.|.+ ||+| ..++.++|++|.++++++ +++++.|+|+
T Consensus 178 tk~Ivl~~p~NptGG~v~s~~~l~~I~~ia~~~-gi~li~Daa~ 220 (460)
T PRK13238 178 VPFIVMTITNNSAGGQPVSMANLRAVYEIAKKY-GIPVVIDAAR 220 (460)
T ss_pred eeEEEEecCCCCCCCcCCCHHHHHHHHHHHHHc-CCEEEEECcc
Confidence 445555 8886 899999999999999999 9999999966
No 185
>PRK04260 acetylornithine aminotransferase; Provisional
Probab=97.19 E-value=0.00085 Score=52.48 Aligned_cols=61 Identities=18% Similarity=0.279 Sum_probs=43.2
Q ss_pred ccCCCC-CCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhhc
Q psy207 37 SVGGCD-PTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNFG 105 (109)
Q Consensus 37 ~~~~~~-lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~fg 105 (109)
|++|+. ++.+.|+++.++++++ +.++++||+|.||.... ..+....+ ...+++ .||||.+|
T Consensus 176 ~~~G~~~~~~~~l~~~~~l~~~~-~~~~i~De~~~g~g~~g---~~~~~~~~-~~~pdi---~t~sK~l~ 237 (375)
T PRK04260 176 GESGVLPADKDFVKALADYCQET-GILLIVDEVQTGMGRTG---KLYAFEHY-GIEPDI---FTLAKGLA 237 (375)
T ss_pred CCCCCcCCCHHHHHHHHHHHHHc-CCEEEEechhhCCCccc---chhhhHhh-CCCCCE---EEeccccc
Confidence 777775 5678899999999999 99999999999986432 12222111 234553 38999886
No 186
>PRK07050 cystathionine beta-lyase; Provisional
Probab=97.18 E-value=0.0014 Score=52.28 Aligned_cols=65 Identities=14% Similarity=0.192 Sum_probs=47.8
Q ss_pred CCCCeeee-ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhhc
Q psy207 29 PHPKKVNL-SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNFG 105 (109)
Q Consensus 29 ~~~~kv~L-~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~fg 105 (109)
++++.|.+ ||+....+.+++++|+++++++ ++++++|++|.--..-. .+ +.+. -+++.|+||.++
T Consensus 149 ~~tklV~le~p~Np~~~~~di~~I~~ia~~~-gi~livD~a~a~~~~~~------~l----~~Ga-Di~v~S~tK~~~ 214 (394)
T PRK07050 149 PNTRLIWLEAPGSVTMEVPDVPAITAAARAR-GVVTAIDNTYSAGLAFK------PF----EHGV-DISVQALTKYQS 214 (394)
T ss_pred CCCeEEEEECCCCCCccHhhHHHHHHHHHHc-CCEEEEECCcccccccC------HH----HcCC-eEEEEECCceec
Confidence 45677776 6776678999999999999999 99999999985422111 12 1222 377999999985
No 187
>PRK08088 4-aminobutyrate aminotransferase; Validated
Probab=97.18 E-value=0.00074 Score=54.08 Aligned_cols=61 Identities=18% Similarity=0.241 Sum_probs=45.2
Q ss_pred ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhhc
Q psy207 37 SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNFG 105 (109)
Q Consensus 37 ~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~fg 105 (109)
++|...++++.+++|.++++++ ++++|.||+|.||.... ..+++... ...+. +.||||.+|
T Consensus 211 ~~G~~~~~~~~~~~l~~l~~~~-~~~lI~Dev~~g~g~~g---~~~~~~~~-~~~pd---i~s~sK~l~ 271 (425)
T PRK08088 211 EGGFYAASPAFMQRLRALCDEH-GIMLIADEVQTGAGRTG---TLFAMEQM-GVAAD---LTTFAKSIA 271 (425)
T ss_pred CCCCcCCCHHHHHHHHHHHHHc-CCEEEEeccccCCCcCc---chhHHhhc-CCCCC---EEEEecccc
Confidence 6677788999999999999999 99999999999985431 12222221 12233 689999987
No 188
>PRK08861 cystathionine gamma-synthase; Provisional
Probab=97.16 E-value=0.0009 Score=53.58 Aligned_cols=62 Identities=18% Similarity=0.098 Sum_probs=44.6
Q ss_pred CCCCeeee----ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhh
Q psy207 29 PHPKKVNL----SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNF 104 (109)
Q Consensus 29 ~~~~kv~L----~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~f 104 (109)
++++.|.+ ||||..++.+ +|+++++++ ++++++|++|....... .+ +.+.. ++++|++|++
T Consensus 137 ~~tklV~lesP~NPtG~v~dl~---~I~~la~~~-gi~vIvDea~~~~~~~~------pl----~~GaD-ivv~S~tK~l 201 (388)
T PRK08861 137 KKPKLILLETPSNPLVRVVDIA---ELCQKAKAV-GALVAVDNTFLTPVLQK------PL----ELGAD-FVIHSTTKYI 201 (388)
T ss_pred cCCeEEEEECCCCCCCcccCHH---HHHHHHHHc-CCEEEEECCccccccCC------Cc----ccCCC-EEEeecceec
Confidence 35677877 9999998855 666777788 99999999997543221 11 22334 6789999988
Q ss_pred c
Q psy207 105 G 105 (109)
Q Consensus 105 g 105 (109)
|
T Consensus 202 ~ 202 (388)
T PRK08861 202 N 202 (388)
T ss_pred c
Confidence 7
No 189
>PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed
Probab=97.14 E-value=0.0012 Score=51.92 Aligned_cols=44 Identities=9% Similarity=0.184 Sum_probs=36.5
Q ss_pred CCCeeee----ccCCCCCC-HHHHHHHHHHHHhCCCcEEEEecccccccC
Q psy207 30 HPKKVNL----SVGGCDPT-EDQWKQLAQLFKERPSLFVFFDSAYQGFAS 74 (109)
Q Consensus 30 ~~~kv~L----~~~~~~lt-~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~ 74 (109)
.++.|.+ ||+|..++ ++.|++|.++++++ ++++|+||+|.||..
T Consensus 187 ~~~aii~e~~~~~~G~~~~~~~~l~~l~~l~~~~-gi~lI~DEv~~g~g~ 235 (401)
T PRK00854 187 NTVAFLVEPIQGEAGVIIPPAGYFTRVRELCTAN-NVTLILDEIQTGLGR 235 (401)
T ss_pred CeEEEEEccccCCCCCcCCCHHHHHHHHHHHHHc-CCEEEEechhhCCCC
Confidence 3445555 88998887 45699999999999 999999999999865
No 190
>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional
Probab=97.14 E-value=0.0012 Score=52.85 Aligned_cols=65 Identities=11% Similarity=0.000 Sum_probs=45.3
Q ss_pred CCCCeeee----ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhh
Q psy207 29 PHPKKVNL----SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNF 104 (109)
Q Consensus 29 ~~~~kv~L----~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~f 104 (109)
++++.|.+ ||+|... ++++|+++++++ ++++++|++|....... .+ +.+.. ++++|++|.+
T Consensus 154 ~~tklV~~esp~Nptg~v~---dl~~I~~la~~~-g~~vivD~a~a~~~~~~------~~----~~gaD-ivv~S~tK~l 218 (403)
T PRK07810 154 VPTQAVFFETPSNPMQSLV---DIAAVSELAHAA-GAKVVLDNVFATPLLQR------GL----PLGAD-VVVYSGTKHI 218 (403)
T ss_pred cCceEEEEECCCCCCCeec---CHHHHHHHHHHc-CCEEEEECCCCccccCC------hh----hcCCc-EEEccCCcee
Confidence 35667765 7777666 477778888899 99999999986443321 12 22333 5689999999
Q ss_pred ccCC
Q psy207 105 GLYS 108 (109)
Q Consensus 105 glyg 108 (109)
|..|
T Consensus 219 ~g~g 222 (403)
T PRK07810 219 DGQG 222 (403)
T ss_pred cCCc
Confidence 8755
No 191
>PRK08574 cystathionine gamma-synthase; Provisional
Probab=97.13 E-value=0.00089 Score=53.31 Aligned_cols=61 Identities=15% Similarity=0.083 Sum_probs=42.7
Q ss_pred CCCeeee----ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccc-cccCCChhhhHHHHHHhHHhCCcEEEEechhhhh
Q psy207 30 HPKKVNL----SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQ-GFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNF 104 (109)
Q Consensus 30 ~~~kv~L----~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~-gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~f 104 (109)
+++.|.+ ||+|...+ +++|+++++++ ++++++|++|. ++... .+ +.+. -+++.|+||.+
T Consensus 137 ~tklV~ie~p~NPtG~v~d---l~~I~~la~~~-gi~livD~t~a~~~~~~-------~l----~~Ga-Divv~S~sK~l 200 (385)
T PRK08574 137 RTKLVFIETMTNPTLKVID---VPEVAKAAKEL-GAILVVDNTFATPLLYR-------PL----RHGA-DFVVHSLTKYI 200 (385)
T ss_pred CceEEEEECCCCCCCEecC---HHHHHHHHHHc-CCEEEEECCCCccccCC-------hh----hhCC-cEEEeeCceee
Confidence 4566666 89888877 55778888899 99999999983 32211 12 1233 36788999999
Q ss_pred cc
Q psy207 105 GL 106 (109)
Q Consensus 105 gl 106 (109)
|-
T Consensus 201 ~g 202 (385)
T PRK08574 201 AG 202 (385)
T ss_pred cC
Confidence 74
No 192
>cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites.
Probab=97.13 E-value=0.00044 Score=54.19 Aligned_cols=66 Identities=17% Similarity=0.349 Sum_probs=43.3
Q ss_pred CCCCeeeeccCCCCCCHHHHHHHHHHHHhCCCcEEEEecc-cccccCCChhhhHHHHHHhHHhCCcEEEEechhhhh
Q psy207 29 PHPKKVNLSVGGCDPTEDQWKQLAQLFKERPSLFVFFDSA-YQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNF 104 (109)
Q Consensus 29 ~~~~kv~L~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~A-Y~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~f 104 (109)
..++.|.++...+ .+..++++|+++++++ ++++++|++ |.|+..+..... .+ . +.. +++.|+||+|
T Consensus 160 ~~~~~v~~~~~~~-~~~~~~~~I~~l~~~~-~~~li~D~a~~~g~~~~g~~~~--~~----~-~~d-v~~~s~sK~l 226 (402)
T cd00378 160 FKPKLIVAGASAY-PRPIDFKRFREIADEV-GAYLLVDMAHVAGLVAGGVFPN--PL----P-GAD-VVTTTTHKTL 226 (402)
T ss_pred CCCCEEEecCccc-CCCcCHHHHHHHHHhc-CCEEEEEccchhhhhhcccCCC--cc----c-CCc-EEEeccccCC
Confidence 4566777643332 3445788999999999 999999999 577653211000 11 1 234 5799999988
No 193
>TIGR01885 Orn_aminotrans ornithine aminotransferase. This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis.
Probab=97.10 E-value=0.0011 Score=52.35 Aligned_cols=63 Identities=11% Similarity=0.146 Sum_probs=43.2
Q ss_pred ccCCCCCC-HHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhhccC
Q psy207 37 SVGGCDPT-EDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNFGLY 107 (109)
Q Consensus 37 ~~~~~~lt-~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~fgly 107 (109)
+++|.... .+.|++|.++++++ ++++++||+|.||.... + .+..... ...+.++ +|||.+|..
T Consensus 197 ~~~G~~~~~~~~l~~l~~l~~~~-~~lli~DEv~~g~g~~G--~-~~~~~~~-~~~~di~---~~gK~l~~g 260 (401)
T TIGR01885 197 GEAGVVVPDDGYLKKVRELCTKH-NVLLIADEIQTGLGRTG--K-LLCVDHE-NVKPDIV---LLGKALSGG 260 (401)
T ss_pred CCCCCccCCHHHHHHHHHHHHHc-CCEEEEechhhCCCccc--h-hhHHhhc-CCCCCEE---EeeccccCC
Confidence 77787665 55799999999999 99999999999986432 1 1122111 2234543 478999864
No 194
>PRK06918 4-aminobutyrate aminotransferase; Reviewed
Probab=97.07 E-value=0.001 Score=53.83 Aligned_cols=61 Identities=21% Similarity=0.367 Sum_probs=43.1
Q ss_pred CCC-CCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhhccCC
Q psy207 39 GGC-DPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNFGLYS 108 (109)
Q Consensus 39 ~~~-~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~fglyg 108 (109)
+|. .++++.|++|.++++++ ++++|+||.|.||.... ..++...+ ...+. +.||||.+| .|
T Consensus 232 gG~~~~~~~~l~~l~~l~~~~-gillI~DEV~tg~gr~g---~~~a~~~~-~v~pD---i~t~sK~l~-~G 293 (451)
T PRK06918 232 GGFIVPSKKFVQEVRNICSEH-GILFVADEIQTGFARTG---KYFAIEHF-DVVPD---LITVSKSLG-AG 293 (451)
T ss_pred CCCccCCHHHHHHHHHHHHHc-CCEEEEeccccCcCccC---ceehhHhc-CCCCC---EEeeehhhc-CC
Confidence 354 56677799999999999 99999999999996432 12233333 12245 348999998 45
No 195
>TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily. This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase.
Probab=97.00 E-value=0.0022 Score=50.09 Aligned_cols=63 Identities=22% Similarity=0.267 Sum_probs=42.8
Q ss_pred CCCeeee----ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhhc
Q psy207 30 HPKKVNL----SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNFG 105 (109)
Q Consensus 30 ~~~kv~L----~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~fg 105 (109)
.++.|.+ ||||...+ +++|.++++++ ++++++|+|+. ...+.+ | +.+.+..+++ .|++|.||
T Consensus 156 ~~~lv~i~~~~n~tG~~~~---~~~i~~~~~~~-~~~~ivD~a~~-~~~~~~--~------~~~~~~d~~~-~s~~K~~g 221 (397)
T TIGR01976 156 RTRLVAVTAASNTLGSIVD---LAAITELVHAA-GALVVVDAVHY-APHGLI--D------VQATGADFLT-CSAYKFFG 221 (397)
T ss_pred CceEEEEeCCCCCCCccCC---HHHHHHHHHHc-CCEEEEehhhh-ccccCC--C------HHHcCCCEEE-EechhhcC
Confidence 4556666 99998764 77788888899 99999999863 222211 1 1133455554 79999997
Q ss_pred c
Q psy207 106 L 106 (109)
Q Consensus 106 l 106 (109)
.
T Consensus 222 ~ 222 (397)
T TIGR01976 222 P 222 (397)
T ss_pred C
Confidence 4
No 196
>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase. Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli.
Probab=97.00 E-value=0.0018 Score=50.11 Aligned_cols=66 Identities=18% Similarity=0.206 Sum_probs=43.7
Q ss_pred CCCCeeee----ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhh
Q psy207 29 PHPKKVNL----SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNF 104 (109)
Q Consensus 29 ~~~~kv~L----~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~f 104 (109)
+..+.|.+ ||||...+. ++|+++++++ +.++++| +||.+..-. -| +. +.+.. +++.|++|.+
T Consensus 128 ~~~~~v~~~~~~~~tG~~~~i---~~I~~l~~~~-g~~livD-~~~~~g~~~--~~---~~---~~~~D-~~~~s~~K~l 193 (363)
T TIGR02326 128 PAITHIALVHCETTTGILNPI---EAVAKLAHRH-GKVTIVD-AMSSFGGIP--ID---IA---ELHID-YLISSANKCI 193 (363)
T ss_pred CCccEEEEEeecCCccccCcH---HHHHHHHHHc-CCEEEEE-ccccccCcc--cc---hh---hcCcc-EEEecCcccc
Confidence 33444544 899998874 6788888899 9999999 677774322 12 11 23445 4467999986
Q ss_pred -ccCC
Q psy207 105 -GLYS 108 (109)
Q Consensus 105 -glyg 108 (109)
|..|
T Consensus 194 ~~p~G 198 (363)
T TIGR02326 194 QGVPG 198 (363)
T ss_pred ccCCc
Confidence 6655
No 197
>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=96.99 E-value=0.0023 Score=50.97 Aligned_cols=65 Identities=12% Similarity=0.163 Sum_probs=47.3
Q ss_pred CCCCeeee-ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhhc
Q psy207 29 PHPKKVNL-SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNFG 105 (109)
Q Consensus 29 ~~~~kv~L-~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~fg 105 (109)
+.++.|.+ +|+-......++++|+++++++ ++++++|++|..-.... .+ +.+.. +++.|++|.+|
T Consensus 134 ~~tklV~lesp~Np~g~~~dl~~I~~la~~~-g~~livD~t~a~g~~~~------pl----~~gaD-ivv~S~tK~l~ 199 (377)
T TIGR01324 134 PNTKVLFLEAPSSITFEIQDIPAIAKAARNP-GIVIMIDNTWAAGLLFK------PL----EHGVD-ISIQAGTKYLV 199 (377)
T ss_pred CCceEEEEECCCCCCCcHHHHHHHHHHHHHc-CCEEEEECCCccccccC------cc----ccCce-EEEecCceecc
Confidence 45666666 4555667888999999999999 99999999986422221 11 23444 57899999997
No 198
>PRK05967 cystathionine beta-lyase; Provisional
Probab=96.97 E-value=0.003 Score=50.84 Aligned_cols=65 Identities=14% Similarity=0.148 Sum_probs=49.8
Q ss_pred CCCCeeee-ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhhc
Q psy207 29 PHPKKVNL-SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNFG 105 (109)
Q Consensus 29 ~~~~kv~L-~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~fg 105 (109)
++++.|.+ +|+.-.++..++++|+++++++ ++++++|++|.....-. .+ +.+.. +|+.|.+|.++
T Consensus 148 ~~TklV~lesPsNP~l~v~dl~~I~~la~~~-g~~vvVD~t~a~p~~~~------pl----~~GaD-ivv~S~tKy~~ 213 (395)
T PRK05967 148 PNTKVVHTEAPGSNTFEMQDIPAIAEAAHRH-GAIVMMDNTWATPLYFR------PL----DFGVD-ISIHAATKYPS 213 (395)
T ss_pred cCceEEEEECCCCCCCcHHHHHHHHHHHHHh-CCEEEEECCccCceecC------hh----HcCCC-EEEEecccccC
Confidence 45777888 4777788999999999999999 99999999997543221 22 24445 67999999855
No 199
>PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated
Probab=96.95 E-value=0.0012 Score=52.41 Aligned_cols=63 Identities=19% Similarity=0.164 Sum_probs=44.3
Q ss_pred CCCCeeee----ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhh
Q psy207 29 PHPKKVNL----SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNF 104 (109)
Q Consensus 29 ~~~~kv~L----~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~f 104 (109)
++++.|.+ ||+|...+ +++|+++++++ ++++++|++|.....+. .+ +.+.. +++.|++|.+
T Consensus 133 ~~t~lV~lesP~Nptg~~~d---i~~I~~la~~~-gi~vivD~t~a~~~~~~------p~----~~gaD-ivv~S~tK~l 197 (380)
T PRK06176 133 PNTKALYLETPSNPLLKITD---LAQCASVAKDH-GLLTIVDNTFATPYYQN------PL----LLGAD-IVVHSGTKYL 197 (380)
T ss_pred cCceEEEEECCCCCCceecC---HHHHHHHHHHc-CCEEEEECCccccccCC------cc----ccCCC-EEEecCceec
Confidence 45667776 77776664 66778888899 99999999997543331 11 12333 7799999999
Q ss_pred cc
Q psy207 105 GL 106 (109)
Q Consensus 105 gl 106 (109)
|-
T Consensus 198 ~g 199 (380)
T PRK06176 198 GG 199 (380)
T ss_pred cC
Confidence 74
No 200
>PRK07582 cystathionine gamma-lyase; Validated
Probab=96.95 E-value=0.0018 Score=51.06 Aligned_cols=62 Identities=18% Similarity=0.101 Sum_probs=41.5
Q ss_pred CCCCeeee----ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhh
Q psy207 29 PHPKKVNL----SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNF 104 (109)
Q Consensus 29 ~~~~kv~L----~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~f 104 (109)
++++.|.+ ||+|. ..++++|+++++++ ++++++|++|.... |. . .+ +.+.. ++++|+||++
T Consensus 131 ~~t~lV~le~p~NPtg~---v~di~~I~~~a~~~-g~~lvVD~t~~~~~-~~--~---p~----~~g~D-ivv~S~sK~l 195 (366)
T PRK07582 131 AGADLVLAETPSNPGLD---VCDLAALAAAAHAA-GALLVVDNTTATPL-GQ--R---PL----ELGAD-LVVASDTKAL 195 (366)
T ss_pred cCceEEEEECCCCCCCC---ccCHHHHHHHHHHc-CCEEEEECCCCCcc-cc--C---ch----hcCCc-EEEecccccc
Confidence 34566666 66664 44678888888899 99999999995321 21 1 12 12334 5779999998
Q ss_pred c
Q psy207 105 G 105 (109)
Q Consensus 105 g 105 (109)
+
T Consensus 196 ~ 196 (366)
T PRK07582 196 T 196 (366)
T ss_pred c
Confidence 4
No 201
>PRK10874 cysteine sulfinate desulfinase; Provisional
Probab=96.95 E-value=0.0017 Score=51.04 Aligned_cols=66 Identities=20% Similarity=0.251 Sum_probs=44.6
Q ss_pred CCCCeeee----ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhh
Q psy207 29 PHPKKVNL----SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNF 104 (109)
Q Consensus 29 ~~~~kv~L----~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~f 104 (109)
+.++.|.+ ||||...+. ++|+++++++ ++++++|++|.- |...-|. . +.+.. +++.|++|.|
T Consensus 159 ~~t~lv~i~~~~n~tG~~~~~---~~i~~l~~~~-g~~~ivD~a~~~---g~~~~~~---~---~~~~d-~~~~s~~K~~ 224 (401)
T PRK10874 159 PRTRILALGQMSNVTGGCPDL---ARAITLAHQA-GMVVMVDGAQGA---VHFPADV---Q---ALDID-FYAFSGHKLY 224 (401)
T ss_pred cCcEEEEEeCCcccccCcCCH---HHHHHHHHHc-CCEEEEECCccc---ccccCCc---h---hcCCC-EEEEeccccc
Confidence 45566666 899999865 4677777888 999999999842 2111121 1 12333 4578999999
Q ss_pred ccCC
Q psy207 105 GLYS 108 (109)
Q Consensus 105 glyg 108 (109)
|..|
T Consensus 225 gp~G 228 (401)
T PRK10874 225 GPTG 228 (401)
T ss_pred CCCc
Confidence 9876
No 202
>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=96.93 E-value=0.0035 Score=50.82 Aligned_cols=65 Identities=18% Similarity=0.208 Sum_probs=45.5
Q ss_pred CCCCeeee----ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhh
Q psy207 29 PHPKKVNL----SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNF 104 (109)
Q Consensus 29 ~~~~kv~L----~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~f 104 (109)
++++.|.+ ||||...+.+ +|+++++++ ++++++|++|. .+.... .+ +.+.. ++++|++|.+
T Consensus 148 ~~tklV~l~sp~NPtG~v~di~---~I~~la~~~-gi~vIvD~t~a---~~~~~~---pl----~~gaD-ivv~S~tK~l 212 (431)
T PRK08248 148 DKTKALFAETIGNPKGDVLDIE---AVAAIAHEH-GIPLIVDNTFA---SPYLLR---PI----EHGAD-IVVHSATKFI 212 (431)
T ss_pred CCCeEEEEECCCCCCCcccCHH---HHHHHHHHc-CCEEEEeCCCC---ccccCC---hh----HcCCC-EEEEcCcccc
Confidence 35667777 8999888754 677777889 99999999974 221111 12 23444 5679999999
Q ss_pred ccCC
Q psy207 105 GLYS 108 (109)
Q Consensus 105 glyg 108 (109)
|..|
T Consensus 213 gg~g 216 (431)
T PRK08248 213 GGHG 216 (431)
T ss_pred CCCC
Confidence 9876
No 203
>PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated
Probab=96.92 E-value=0.0015 Score=51.51 Aligned_cols=66 Identities=17% Similarity=0.160 Sum_probs=44.9
Q ss_pred CCCCeeee----ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhh
Q psy207 29 PHPKKVNL----SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNF 104 (109)
Q Consensus 29 ~~~~kv~L----~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~f 104 (109)
+.++.|.+ ||||...+. ++|+++++++ ++++++|++|.... -.+ | + .+.+.. +++.|++|.+
T Consensus 163 ~~t~lv~l~~~~n~tG~~~~~---~~i~~~~~~~-~~~vivD~a~~~g~-~~~--~---~---~~~~~D-~~~~s~~K~~ 228 (406)
T PRK09295 163 ERTRLLAITHVSNVLGTENPL---AEMIALAHQH-GAKVLVDGAQAVMH-HPV--D---V---QALDCD-FYVFSGHKLY 228 (406)
T ss_pred CCcEEEEEecchhcccccCCH---HHHHHHHHHc-CCEEEEEcccccCc-ccc--C---c---hhcCCC-EEEeehhhcc
Confidence 34566666 999999875 5567777888 99999999974322 111 2 1 122334 5678999999
Q ss_pred ccCC
Q psy207 105 GLYS 108 (109)
Q Consensus 105 glyg 108 (109)
|..|
T Consensus 229 gp~G 232 (406)
T PRK09295 229 GPTG 232 (406)
T ss_pred CCCC
Confidence 9876
No 204
>TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type. Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation.
Probab=96.90 E-value=0.0029 Score=49.36 Aligned_cols=65 Identities=18% Similarity=0.210 Sum_probs=44.6
Q ss_pred CCCeeee----ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhhc
Q psy207 30 HPKKVNL----SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNFG 105 (109)
Q Consensus 30 ~~~kv~L----~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~fg 105 (109)
.++.|.+ ||||...+.+ +|.++++++ ++++++|.++ .+..-.+ | +.+.+.. +++.|+.|.+|
T Consensus 140 ~t~lv~~~~~~n~tG~~~~~~---~I~~la~~~-g~~~ivD~a~-~~g~~~~--~------~~~~~~D-~~~~s~~K~~g 205 (382)
T TIGR03403 140 KTALVSVMWANNETGMIFPIK---EIGEICKER-GVLFHTDAVQ-AIGKIPV--D------VQKAGVD-FLSFSAHKFHG 205 (382)
T ss_pred CCeEEEEEcccCCCccccCHH---HHHHHHHHc-CCEEEEechh-hcCCCcc--C------ccccCCC-EEEEcchhhCC
Confidence 4455555 8999999865 666777788 9999999994 4432111 1 1133456 67899999988
Q ss_pred cCC
Q psy207 106 LYS 108 (109)
Q Consensus 106 lyg 108 (109)
..|
T Consensus 206 p~G 208 (382)
T TIGR03403 206 PKG 208 (382)
T ss_pred CCc
Confidence 776
No 205
>PRK08117 4-aminobutyrate aminotransferase; Provisional
Probab=96.85 E-value=0.0026 Score=51.09 Aligned_cols=56 Identities=21% Similarity=0.375 Sum_probs=40.8
Q ss_pred CCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhhc
Q psy207 42 DPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNFG 105 (109)
Q Consensus 42 ~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~fg 105 (109)
.++++.|++|.++++++ ++++|+||+|.||.... ..++...+ ...+. +.||||.+|
T Consensus 224 ~~~~~~l~~l~~lc~~~-g~llI~DEv~tG~gr~G---~~~~~~~~-gv~pD---i~t~sK~lg 279 (433)
T PRK08117 224 VPPKSFLKKLREICDRH-GILLIFDEVQTGFGRTG---EWFAAQTF-GVVPD---IMTIAKGIA 279 (433)
T ss_pred cCCHHHHHHHHHHHHHc-CCEEEEecchhccCccc---cchhHhhc-CCCCC---Eeehhhhcc
Confidence 57899999999999999 99999999999985431 11122222 12233 369999998
No 206
>TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA. Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.
Probab=96.82 E-value=0.0033 Score=49.35 Aligned_cols=66 Identities=21% Similarity=0.234 Sum_probs=44.3
Q ss_pred CCCCeeee----ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhh
Q psy207 29 PHPKKVNL----SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNF 104 (109)
Q Consensus 29 ~~~~kv~L----~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~f 104 (109)
++++.|.+ ||||...+ +++|+++++++ ++++++|++|.... ..+ +. . +.+.. +++.|++|.|
T Consensus 156 ~~t~lv~i~~~~n~tG~~~~---~~~i~~~~~~~-~~~~ivD~a~~~~~-~~~--~~---~---~~~~d-~~~~s~~K~~ 221 (398)
T TIGR03392 156 PRTRILALGQMSNVTGGCPD---LARAITLAHQY-GAVVVVDGAQGVVH-GPP--DV---Q---ALDID-FYAFSGHKLY 221 (398)
T ss_pred cCceEEEEECccccccccCC---HHHHHHHHHHc-CCEEEEEhhhhcCC-CCC--Ch---h---hcCCC-EEEEeccccc
Confidence 34566666 89999976 55688888899 99999999985322 111 21 1 12333 4467777999
Q ss_pred ccCC
Q psy207 105 GLYS 108 (109)
Q Consensus 105 glyg 108 (109)
|..|
T Consensus 222 gp~G 225 (398)
T TIGR03392 222 GPTG 225 (398)
T ss_pred CCCc
Confidence 9876
No 207
>PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional
Probab=96.81 E-value=0.0019 Score=51.89 Aligned_cols=59 Identities=22% Similarity=0.298 Sum_probs=41.9
Q ss_pred cCCCCC-CHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhhc
Q psy207 38 VGGCDP-TEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNFG 105 (109)
Q Consensus 38 ~~~~~l-t~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~fg 105 (109)
-+|... +++.|++|.++++++ ++++++||+|.||..|. ......+ ...+. +.+|||.+|
T Consensus 209 ~~G~~~~~~~~l~~l~~l~~~~-~~llI~DEv~~G~r~g~----~~~~~~~-~~~pD---i~~~gK~l~ 268 (426)
T PRK00062 209 NMGVVPPKPGFLEGLRELCDEH-GALLIFDEVMTGFRVAL----GGAQGYY-GVTPD---LTTLGKIIG 268 (426)
T ss_pred CCCCcCCCHHHHHHHHHHHHHc-CCEEEEeechhccccCC----ccHHHHh-CCCcc---hHhhhhHhh
Confidence 355555 588899999999999 99999999999996553 1122222 12234 368999987
No 208
>PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=96.75 E-value=0.0033 Score=50.72 Aligned_cols=63 Identities=17% Similarity=0.260 Sum_probs=44.1
Q ss_pred CCCCeeee----ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhh
Q psy207 29 PHPKKVNL----SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNF 104 (109)
Q Consensus 29 ~~~~kv~L----~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~f 104 (109)
++++.|.+ ||+|...+ +++|+++++++ ++++++|+++..-... . .+ +.+.. +++.|++|.+
T Consensus 147 ~~tklV~vesp~NptG~v~d---l~~I~~la~~~-gi~livD~a~a~~~~~----~--pl----~~gaD-ivv~S~tK~l 211 (427)
T PRK05994 147 PRTKAIFIESIANPGGTVTD---IAAIAEVAHRA-GLPLIVDNTLASPYLI----R--PI----EHGAD-IVVHSLTKFL 211 (427)
T ss_pred cCCeEEEEECCCCCCCeecC---HHHHHHHHHHc-CCEEEEECCccccccC----C--cc----ccCCc-EEEEcCcccc
Confidence 35666777 88998775 67888888899 9999999998521111 1 11 23444 6689999998
Q ss_pred cc
Q psy207 105 GL 106 (109)
Q Consensus 105 gl 106 (109)
|-
T Consensus 212 gg 213 (427)
T PRK05994 212 GG 213 (427)
T ss_pred CC
Confidence 73
No 209
>PLN02509 cystathionine beta-lyase
Probab=96.71 E-value=0.0061 Score=50.11 Aligned_cols=63 Identities=16% Similarity=0.143 Sum_probs=43.7
Q ss_pred CCCCeeee----ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhh
Q psy207 29 PHPKKVNL----SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNF 104 (109)
Q Consensus 29 ~~~~kv~L----~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~f 104 (109)
++++.|.+ ||+|. ..++++|+++++++ ++++++|++|..-..+. .+ +.+. -++++|++|.+
T Consensus 216 ~~TklV~lesPsNPtG~---i~Dl~~I~~lAk~~-g~~lIVD~A~a~~~~~~------pl----~~ga-Divv~S~tK~l 280 (464)
T PLN02509 216 PQTKLVWLESPTNPRQQ---ISDIRKIAEMAHAQ-GALVLVDNSIMSPVLSR------PL----ELGA-DIVMHSATKFI 280 (464)
T ss_pred cCCeEEEEECCCCCCCC---HHHHHHHHHHHHHc-CCEEEEECCccccccCC------hh----hcCC-cEEEecCcccc
Confidence 34555655 66664 68899999999999 99999999964322221 12 2233 37799999988
Q ss_pred cc
Q psy207 105 GL 106 (109)
Q Consensus 105 gl 106 (109)
+=
T Consensus 281 ~G 282 (464)
T PLN02509 281 AG 282 (464)
T ss_pred cC
Confidence 63
No 210
>PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase
Probab=96.67 E-value=0.0051 Score=48.85 Aligned_cols=65 Identities=18% Similarity=0.125 Sum_probs=44.3
Q ss_pred CCCeeee----ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhhc
Q psy207 30 HPKKVNL----SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNFG 105 (109)
Q Consensus 30 ~~~kv~L----~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~fg 105 (109)
.++.|.+ ||||..++.+ +|+++++++ ++++++|.+|. + |...-| + .+.+.. +++.|++|.+|
T Consensus 173 ~t~lv~i~~~~n~tG~~~~~~---~I~~l~~~~-g~~vivD~a~~-~--g~~~~~---~---~~~~~d-~~~~s~~K~~g 238 (424)
T PLN02855 173 KTKLVATHHVSNVLGSILPVE---DIVHWAHAV-GAKVLVDACQS-V--PHMPVD---V---QTLGAD-FLVASSHKMCG 238 (424)
T ss_pred CceEEEEeCccccccccCCHH---HHHHHHHHc-CCEEEEEhhhh-c--CCcCCC---c---hhcCCC-EEEeecccccC
Confidence 4566666 9999999865 566777788 99999999983 2 211111 1 123444 45999999888
Q ss_pred cCC
Q psy207 106 LYS 108 (109)
Q Consensus 106 lyg 108 (109)
..|
T Consensus 239 p~G 241 (424)
T PLN02855 239 PTG 241 (424)
T ss_pred CCc
Confidence 765
No 211
>PLN03227 serine palmitoyltransferase-like protein; Provisional
Probab=96.65 E-value=0.0053 Score=48.84 Aligned_cols=64 Identities=17% Similarity=0.196 Sum_probs=40.9
Q ss_pred ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccC-CChhhhHHHHHHhH--HhCCcEEEEechhhhhccC
Q psy207 37 SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFAS-GDLERDAFAVRYFA--QEGFEFLCSQSFAKNFGLY 107 (109)
Q Consensus 37 ~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~-g~~~~d~~~l~~~~--~~~~~~~v~~SfSK~fgly 107 (109)
|++|...+ +++|.++++++ ++++++||+|. |.. |.. -.....++- .....-+++.|+||.+|.-
T Consensus 149 ~~~G~i~~---l~~i~~l~~~~-g~~livDe~~~-~g~~g~~--G~g~~~~~g~~p~~~~Div~~slsk~~g~~ 215 (392)
T PLN03227 149 KNTGTLAP---LKELVALKEEF-HYRLILDESFS-FGTLGKS--GRGSLEHAGLKPMVHAEIVTFSLENAFGSV 215 (392)
T ss_pred CCCCcccC---HHHHHHHHHHc-CCEEEEECccc-ccccCCC--CCcHHHHcCCCCCCCceEEEeechhhhhcc
Confidence 66777666 77888999999 99999999995 442 211 011222221 1112257788999998743
No 212
>PRK04612 argD acetylornithine transaminase protein; Provisional
Probab=96.64 E-value=0.0045 Score=49.68 Aligned_cols=56 Identities=14% Similarity=0.149 Sum_probs=39.8
Q ss_pred CCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhhc
Q psy207 42 DPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNFG 105 (109)
Q Consensus 42 ~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~fg 105 (109)
.++++.|++|.++++++ ++++|+||+|.||.... ..+... .......+.||||.+|
T Consensus 204 ~~~~~~l~~l~~l~~~~-g~llI~DEv~tg~gr~G---~~~a~~----~~~~~pdi~t~~K~l~ 259 (408)
T PRK04612 204 PAAPGFLARVRALCDQH-DALLVLDEIQCGMGRTG---TLFAHW----QEQVTPDIVTLAKALG 259 (408)
T ss_pred CCCHHHHHHHHHHHHHc-CCEEEEeccccCCCcCC---chhhhh----hcCCCCCEEEEcchhc
Confidence 34578999999999999 99999999999986532 111211 1112334679999998
No 213
>TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase. In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein.
Probab=96.54 E-value=0.0067 Score=49.70 Aligned_cols=64 Identities=14% Similarity=0.047 Sum_probs=42.1
Q ss_pred CCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhhccCC
Q psy207 40 GCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNFGLYS 108 (109)
Q Consensus 40 ~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~fglyg 108 (109)
+.....++|++|+++++++ ++++++|+||-....- . ...++.-.+.+.--++++|++|++.+.|
T Consensus 216 ~~~g~~ddL~eIa~la~k~-gI~lIvDaAyg~~~~~-~---~~~~~~g~~~Grad~vv~s~hK~l~~pg 279 (444)
T TIGR03531 216 FAPRSPDDIEEIAKICANY-DIPHIVNNAYGLQSNK-Y---MELINKAIKVGRVDAVVSSTDKNFMVPV 279 (444)
T ss_pred CCCcchhCHHHHHHHHHHc-CCEEEEECcCcCcChh-h---hhhhhccccccCCCeEEEeCccCCCCCC
Confidence 3345799999999999999 9999999999753211 0 0011100112111466889999998754
No 214
>cd06450 DOPA_deC_like DOPA decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.
Probab=96.43 E-value=0.0051 Score=46.89 Aligned_cols=61 Identities=20% Similarity=0.049 Sum_probs=39.7
Q ss_pred ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhhc
Q psy207 37 SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNFG 105 (109)
Q Consensus 37 ~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~fg 105 (109)
||+|.. +++++|+++++++ ++++++|.||.++.... +...... .....--+++.|++|.++
T Consensus 159 ~~tG~~---~~~~~i~~~~~~~-~~~l~vD~a~~~~~~~~-~~~~~~~---~~~~~~d~~~~s~~K~l~ 219 (345)
T cd06450 159 TDTGAI---DPLEEIADLAEKY-DLWLHVDAAYGGFLLPF-PEPRHLD---FGIERVDSISVDPHKYGL 219 (345)
T ss_pred CCCCCC---CCHHHHHHHHHHh-CCeEEEechhhHHHhhC-hhhHHHh---cCccccCEEEEchhHhhC
Confidence 788875 5688889999999 99999999998877431 1111111 111111245779999764
No 215
>PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated
Probab=96.42 E-value=0.0089 Score=48.03 Aligned_cols=64 Identities=16% Similarity=0.277 Sum_probs=44.8
Q ss_pred ccCCC-CCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhhccCC
Q psy207 37 SVGGC-DPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNFGLYS 108 (109)
Q Consensus 37 ~~~~~-~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~fglyg 108 (109)
+-+|. .++++.|++|.++++++ ++++|+||++.||+.-. ..+....+ ...+.+ .+|||.+|-.|
T Consensus 209 g~~G~~~~~~~~l~~l~~lc~~~-g~llI~DEV~tG~GrtG---~~~~~~~~-~v~PDi---~t~~K~l~~~G 273 (425)
T PRK09264 209 GEGGINVASAEWLQRLAKLCRKH-DILLIVDDIQAGCGRTG---TFFSFERA-GITPDI---VTLSKSISGYG 273 (425)
T ss_pred CCCCCcCCCHHHHHHHHHHHHHc-CcEEEEechhhCCcccc---HHHHHhhc-CCCCCE---EEeccccCCCc
Confidence 44554 67999999999999999 99999999999985321 12222222 234553 37799887644
No 216
>PLN00144 acetylornithine transaminase
Probab=96.42 E-value=0.0043 Score=49.19 Aligned_cols=61 Identities=20% Similarity=0.269 Sum_probs=42.8
Q ss_pred ccCCC-CCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhhc
Q psy207 37 SVGGC-DPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNFG 105 (109)
Q Consensus 37 ~~~~~-~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~fg 105 (109)
||+|+ .++++-|++|.++++++ ++++|.||+|.||.... ..++...+ ...++ +-||||.+|
T Consensus 178 ~~gg~~~~~~~~~~~l~~l~~~~-g~llI~DEv~tg~gr~g---~~~~~~~~-~~~PD---i~t~sK~l~ 239 (382)
T PLN00144 178 GEGGIYPATKEFLQGLRALCDEA-GALLVFDEVQCGLGRTG---YLWAHEAY-GVEPD---IMTLAKPLA 239 (382)
T ss_pred CCCCCccCCHHHHHHHHHHHHHc-CCEEEEechhhCCCccc---hHhhhhhc-CCCCC---EEEeccccc
Confidence 66444 44666799999999999 99999999999995432 11222222 23455 778899886
No 217
>PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=96.37 E-value=0.0078 Score=48.17 Aligned_cols=60 Identities=17% Similarity=0.247 Sum_probs=41.3
Q ss_pred CCCCC-CHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhhcc
Q psy207 39 GGCDP-TEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNFGL 106 (109)
Q Consensus 39 ~~~~l-t~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~fgl 106 (109)
+|+.+ +++.|++|.++++++ ++++|+||++.||.... ..++...+ ...+.+ -++||.+|-
T Consensus 213 gG~~~~~~~~l~~l~~lc~~~-g~llI~DEv~tg~gr~G---~~~a~~~~-~v~pDi---~~~~K~l~g 273 (423)
T PRK05964 213 GGMLFYDPRYLAELRRICDRH-GVLLIFDEIATGFGRTG---TLFACEQA-GVSPDI---MCLSKGLTG 273 (423)
T ss_pred CCcccCCHHHHHHHHHHHHHc-CCEEEEechhhCCCcCc---chhHHHhc-CCCCCe---eeeehhhhc
Confidence 45544 999999999999999 99999999999985321 11122221 233443 367898853
No 218
>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=96.35 E-value=0.0085 Score=47.52 Aligned_cols=62 Identities=15% Similarity=0.150 Sum_probs=41.5
Q ss_pred CCCCeeee----ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhh
Q psy207 29 PHPKKVNL----SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNF 104 (109)
Q Consensus 29 ~~~~kv~L----~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~f 104 (109)
++++.|.+ ||+|... ++++|+++++++ ++++++|++|..-... . .+ +.+.. +++.|++|++
T Consensus 130 ~~tklv~le~psnptg~v~---dl~~I~~la~~~-g~~vivD~a~~~~~~~----~--~l----~~g~D-i~v~S~tK~l 194 (378)
T TIGR01329 130 PKTKLVLLESPTNPLQKIV---DIRKISEMAHAQ-NALVVVDNTMMSPLLC----N--PL----ELGAD-IVYHSATKFL 194 (378)
T ss_pred cCceEEEEECCCCCCCeee---cHHHHHHHHHHc-CCEEEEECCCcccccC----C--hh----hcCCc-EEEEecceec
Confidence 45566666 6666655 488888999999 9999999997321111 1 22 12333 7789999987
Q ss_pred c
Q psy207 105 G 105 (109)
Q Consensus 105 g 105 (109)
+
T Consensus 195 ~ 195 (378)
T TIGR01329 195 A 195 (378)
T ss_pred c
Confidence 5
No 219
>cd00617 Tnase_like Tryptophanase family (Tnase). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia.
Probab=96.35 E-value=0.0018 Score=52.66 Aligned_cols=37 Identities=16% Similarity=0.218 Sum_probs=32.7
Q ss_pred CCeeee----ccC-CCCCCHHHHHHHHHHHHhCCCcEEEEecc
Q psy207 31 PKKVNL----SVG-GCDPTEDQWKQLAQLFKERPSLFVFFDSA 68 (109)
Q Consensus 31 ~~kv~L----~~~-~~~lt~eqw~~i~~~~~~~p~~~~~~D~A 68 (109)
++.|.| ||+ |...+.+++++|.++++++ +++++.|.|
T Consensus 153 ~~~I~v~~p~N~~gG~~~s~~~l~~i~eia~~~-gi~li~DaA 194 (431)
T cd00617 153 IPYIVLTITNNTAGGQPVSMANLREVRELAHKY-GIPVVLDAA 194 (431)
T ss_pred ccEEEEECCcCCCCCccCCHHHHHHHHHHHHHc-CCEEEEEch
Confidence 344555 786 9999999999999999999 999999999
No 220
>PRK08593 4-aminobutyrate aminotransferase; Provisional
Probab=96.29 E-value=0.011 Score=47.98 Aligned_cols=61 Identities=20% Similarity=0.361 Sum_probs=43.8
Q ss_pred ccCCC-CCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhhc
Q psy207 37 SVGGC-DPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNFG 105 (109)
Q Consensus 37 ~~~~~-~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~fg 105 (109)
+.+|. .++++-|++|.++++++ ++++|+||++.||.... ..++...+ ...+.+ .+|||.+|
T Consensus 218 g~gG~~~~~~~yl~~l~~lc~~~-g~llI~DEv~tg~GrtG---~~~a~~~~-gv~pDi---~t~gK~l~ 279 (445)
T PRK08593 218 GDGGLLEPVPGYFEALYKFCREH-GILFAVDDIQQGLGRTG---KWSSISHF-NITPDL---MSFGKSLA 279 (445)
T ss_pred CCCCCcCCCHHHHHHHHHHHHHc-CCEEEEechhhCCCcCc---hHHHHHhc-CCCCCE---eeeccccc
Confidence 44455 48999999999999999 99999999999995431 12233333 233453 37899887
No 221
>PRK09028 cystathionine beta-lyase; Provisional
Probab=96.25 E-value=0.013 Score=47.12 Aligned_cols=65 Identities=18% Similarity=0.284 Sum_probs=45.7
Q ss_pred CCCCeeee-ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhhc
Q psy207 29 PHPKKVNL-SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNFG 105 (109)
Q Consensus 29 ~~~~kv~L-~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~fg 105 (109)
++++.|.+ +|+.-.....++++|+++++++ ++++++|++|..-..- + .+ +.+.. +|.+|.+|.++
T Consensus 145 ~~TklV~lespsNPtg~v~dl~~I~~la~~~-g~~lvvD~t~a~p~~~----~--Pl----~~GaD-ivv~S~tK~l~ 210 (394)
T PRK09028 145 PNTKVLFLESPGSITMEVQDVPTLSRIAHEH-DIVVMLDNTWASPINS----R--PF----EMGVD-ISIQAATKYIV 210 (394)
T ss_pred cCceEEEEECCCCCCCcHHHHHHHHHHHHHc-CCEEEEECCccccccC----C--cc----ccCce-EEEEeCCeEec
Confidence 45677777 4444456678999999999999 9999999999642211 1 12 23333 66899999985
No 222
>cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits. This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life.
Probab=96.20 E-value=0.0096 Score=46.40 Aligned_cols=63 Identities=16% Similarity=0.165 Sum_probs=41.9
Q ss_pred CCCCeeee---ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhh
Q psy207 29 PHPKKVNL---SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNF 104 (109)
Q Consensus 29 ~~~~kv~L---~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~f 104 (109)
+.++.|.+ +++|.. .+.|++|.++++++ ++++++|+++.... +....+ ..+ .-+++.|++|.+
T Consensus 158 ~~t~~viv~~~~~~G~~--~~~l~~i~~la~~~-g~~livD~~~~~~~-~~~~~~--------~~~-~d~~~~s~~K~~ 223 (398)
T cd00613 158 EEVAALMVQYPNTLGVF--EDLIKEIADIAHSA-GALVYVDGDNLNLT-GLKPPG--------EYG-ADIVVGNLQKTG 223 (398)
T ss_pred CCeEEEEEECCCCCcee--cchHHHHHHHHHhc-CCEEEEEecccccc-CCCChH--------HcC-CCEEEeeccccC
Confidence 34555666 666665 35579999999999 99999999754322 211111 112 357799999998
No 223
>PRK06541 hypothetical protein; Provisional
Probab=96.19 E-value=0.012 Score=48.12 Aligned_cols=60 Identities=18% Similarity=0.403 Sum_probs=43.1
Q ss_pred ccCCCC-CCHHHHHHHHHHHHhCCCcEEEEeccccccc-CCChhhhHHHHHHhHHhCCcEEEEechhhhhc
Q psy207 37 SVGGCD-PTEDQWKQLAQLFKERPSLFVFFDSAYQGFA-SGDLERDAFAVRYFAQEGFEFLCSQSFAKNFG 105 (109)
Q Consensus 37 ~~~~~~-lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~-~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~fg 105 (109)
+.+|.. ++++-|++|.++++++ ++++|+||++.||+ .|. .++...+ ...+.++ +|||.+|
T Consensus 232 g~~G~~~~~~~yl~~l~~lc~~~-g~llI~DEV~tGfGR~G~----~~a~~~~-gv~PDiv---t~gK~l~ 293 (460)
T PRK06541 232 NAGGCFPPPPGYFERVREICDRY-DVLLVSDEVICAFGRLGE----MFGCERF-GYVPDII---TCAKGIT 293 (460)
T ss_pred CCCCCccCCHHHHHHHHHHHHHc-CCEEEEechhhCCCcCch----hhhhhhc-CCCCCEE---Eeccccc
Confidence 566765 5689999999999999 99999999999994 332 1222222 2235544 5899887
No 224
>KOG0634|consensus
Probab=96.19 E-value=0.0064 Score=49.89 Aligned_cols=68 Identities=18% Similarity=0.227 Sum_probs=50.3
Q ss_pred ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCCh------hhhHHHHHHhH----------HhCCcEEEEech
Q psy207 37 SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDL------ERDAFAVRYFA----------QEGFEFLCSQSF 100 (109)
Q Consensus 37 ~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~------~~d~~~l~~~~----------~~~~~~~v~~Sf 100 (109)
||||..++.|.-++|.++++++ ++++|-|+.|-=+..+.. +.-+...+.|. +..-+++-.-||
T Consensus 215 NPTG~tls~errk~iy~LArKy-DfLIVeDdpYy~Lq~~~y~~~~~~~~p~~s~~~f~k~l~~sflslDtdGrVIr~dSF 293 (472)
T KOG0634|consen 215 NPTGNTLSLERRKKIYQLARKY-DFLIVEDDPYYFLQMNTYNPSLELESPAHSSSMFLKSLVPSFLSLDTDGRVIRNDSF 293 (472)
T ss_pred CCCCCccCHHHHHHHHHHHHHc-CEEEEecCccceeeccccCCCccccCccccHHHHHHhhcCCcccccccccEEeccch
Confidence 9999999999999999999999 999999999876665521 11111111222 234588999999
Q ss_pred hhhhc
Q psy207 101 AKNFG 105 (109)
Q Consensus 101 SK~fg 105 (109)
||-++
T Consensus 294 SKiia 298 (472)
T KOG0634|consen 294 SKIIA 298 (472)
T ss_pred hhhhc
Confidence 99764
No 225
>PRK00011 glyA serine hydroxymethyltransferase; Reviewed
Probab=96.14 E-value=0.012 Score=46.60 Aligned_cols=64 Identities=14% Similarity=0.236 Sum_probs=40.1
Q ss_pred CCCeeeeccCCCCCCHHHHHHHHHHHHhCCCcEEEEeccc-ccccCC-ChhhhHHHHHHhHHhCCcEEEEechhhhh
Q psy207 30 HPKKVNLSVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAY-QGFASG-DLERDAFAVRYFAQEGFEFLCSQSFAKNF 104 (109)
Q Consensus 30 ~~~kv~L~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY-~gf~~g-~~~~d~~~l~~~~~~~~~~~v~~SfSK~f 104 (109)
.++.|.++.+.. .....+++|+++++++ ++++++|+|| .|+... ....+ + . +.. +++.||||++
T Consensus 165 ~~k~v~~~~~~~-~~~~~~~~I~~la~~~-~~~livD~a~~~g~~~~g~~~~~---~----~-~~d-i~~~S~~K~l 230 (416)
T PRK00011 165 KPKLIIAGASAY-SRPIDFKRFREIADEV-GAYLMVDMAHIAGLVAAGVHPSP---V----P-HAD-VVTTTTHKTL 230 (416)
T ss_pred CCCEEEECCCcC-CCccCHHHHHHHHHHc-CCEEEEECcchhcccccCccCCC---C----C-CCc-EEEecCCcCC
Confidence 466677632222 1334688999999999 9999999996 444322 11001 1 1 222 6689999987
No 226
>TIGR03235 DNA_S_dndA cysteine desulfurase DndA. This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase.
Probab=96.07 E-value=0.017 Score=44.58 Aligned_cols=65 Identities=15% Similarity=0.232 Sum_probs=42.2
Q ss_pred CCCeeee----ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhhc
Q psy207 30 HPKKVNL----SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNFG 105 (109)
Q Consensus 30 ~~~kv~L----~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~fg 105 (109)
+++.|.+ ||||...+ +++|+++++++ ++++++|++.. +..-.+ |. .+.+..+++ .|+.|.+|
T Consensus 138 ~~~lv~~~~~~n~tG~~~~---~~~I~~l~~~~-~~~~ivD~a~~-~g~~~~--~~------~~~~~D~~~-~s~~K~~g 203 (353)
T TIGR03235 138 DTLLVSIMHVNNETGSIQP---IREIAEVLEAH-EAFFHVDAAQV-VGKITV--DL------SADRIDLIS-CSGHKIYG 203 (353)
T ss_pred CCEEEEEEcccCCceeccC---HHHHHHHHHHc-CCEEEEEchhh-cCCccc--cc------cccCCCEEE-eehhhcCC
Confidence 4555655 89999876 57777788899 99999999843 221111 11 123455554 47789888
Q ss_pred cCC
Q psy207 106 LYS 108 (109)
Q Consensus 106 lyg 108 (109)
..|
T Consensus 204 p~g 206 (353)
T TIGR03235 204 PKG 206 (353)
T ss_pred CCc
Confidence 665
No 227
>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional
Probab=96.00 E-value=0.013 Score=46.12 Aligned_cols=66 Identities=21% Similarity=0.219 Sum_probs=44.0
Q ss_pred CCCeeee-ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhhcc
Q psy207 30 HPKKVNL-SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNFGL 106 (109)
Q Consensus 30 ~~~kv~L-~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~fgl 106 (109)
.++.|.+ +|+...-+...+++|+++++++ ++++++|+||.. |.++.+.. +.+.. +++.|++|+++.
T Consensus 158 ~~~lV~l~~~~~~tG~~~~l~~I~~la~~~-g~~livD~a~~~---g~~~~~~~------~~g~D-~~~~s~~K~l~~ 224 (387)
T PRK09331 158 PPALALLTHVDGNYGNLADAKKVAKVAHEY-GIPFLLNGAYTV---GRMPVDGK------KLGAD-FIVGSGHKSMAA 224 (387)
T ss_pred CCEEEEEECCCCCCcccccHHHHHHHHHHc-CCEEEEECCccc---CCcCCCHH------HcCCC-EEEeeCcccccC
Confidence 4566666 4544444566788999999999 999999999862 22212221 12333 568999999975
No 228
>TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase. Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance.
Probab=95.95 E-value=0.016 Score=46.41 Aligned_cols=61 Identities=15% Similarity=0.289 Sum_probs=44.3
Q ss_pred ccCCC-CCCHHHHHHHHHHHHhCCCcEEEEecccccccC-CChhhhHHHHHHhHHhCCcEEEEechhhhhcc
Q psy207 37 SVGGC-DPTEDQWKQLAQLFKERPSLFVFFDSAYQGFAS-GDLERDAFAVRYFAQEGFEFLCSQSFAKNFGL 106 (109)
Q Consensus 37 ~~~~~-~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~-g~~~~d~~~l~~~~~~~~~~~v~~SfSK~fgl 106 (109)
+.+|+ .++++-|++|.++++++ ++++|+||++.||.. |. .++...+ ...++++ +|||.+|=
T Consensus 205 g~~G~~~~~~~~l~~l~~lc~~~-g~llI~DEV~tG~GRtG~----~~a~~~~-~v~PDi~---~~~K~lg~ 267 (412)
T TIGR02407 205 GEGGINVASDEWLQRLEKLCRRH-DILLIVDDIQAGCGRTGT----FFSFEPA-GIEPDIV---CLSKSISG 267 (412)
T ss_pred CCCCCccCCHHHHHHHHHHHHHc-CCEEEEechhhCCCccch----hHHhccc-CCCCCEE---EechhccC
Confidence 66677 68999999999999999 999999999999953 31 1122211 2345643 58999774
No 229
>PLN02409 serine--glyoxylate aminotransaminase
Probab=95.95 E-value=0.025 Score=44.95 Aligned_cols=65 Identities=15% Similarity=0.224 Sum_probs=44.2
Q ss_pred CCCeeee----ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhhc
Q psy207 30 HPKKVNL----SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNFG 105 (109)
Q Consensus 30 ~~~kv~L----~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~fg 105 (109)
.++.|.+ ||||...+.+++.++++ ++++ ++++++|.++. + |..+-|. .+.+.. +++.|.+|.|+
T Consensus 137 ~~k~v~~~~~~~~tG~~~~~~~i~~l~~-~~~~-g~~~vvD~v~s-~--g~~~id~------~~~~~D-~~~~s~~K~l~ 204 (401)
T PLN02409 137 KIKAVCVVHNETSTGVTNDLAGVRKLLD-CAQH-PALLLVDGVSS-I--GALDFRM------DEWGVD-VALTGSQKALS 204 (401)
T ss_pred CccEEEEEeecccccccCCHHHHHHHHh-hhcc-CcEEEEEcccc-c--CCccccc------cccCcc-EEEEcCccccC
Confidence 4566666 79999999888888877 8888 99999998864 3 3221111 122445 44556699986
Q ss_pred c
Q psy207 106 L 106 (109)
Q Consensus 106 l 106 (109)
.
T Consensus 205 ~ 205 (401)
T PLN02409 205 L 205 (401)
T ss_pred c
Confidence 5
No 230
>PF12897 Aminotran_MocR: Alanine-glyoxylate amino-transferase; InterPro: IPR024551 This entry represents a family of putative aminotransferases.; PDB: 3D6K_C 3EZ1_A 3PPL_B.
Probab=95.83 E-value=0.025 Score=46.08 Aligned_cols=93 Identities=19% Similarity=0.201 Sum_probs=53.3
Q ss_pred CccCCCChhhchhhhhc-CCCCCCeeee-----ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccc--cccCCChhhhH
Q psy207 10 VQQGPPIEVFAVNKAYL-DDPHPKKVNL-----SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQ--GFASGDLERDA 81 (109)
Q Consensus 10 v~~~p~d~~f~l~~~~~-~d~~~~kv~L-----~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~--gf~~g~~~~d~ 81 (109)
||..+.=|-+...++.. .|+.-|-+-. ||||..++.|-.++++++=-..|++-+++|.||. .|... .+++.
T Consensus 151 VpM~~dGPDmD~Ve~LV~~D~svKGiWcVP~ySNPtG~tySde~vrrlA~m~~AA~DFRI~WDNAY~vHhL~~~-~~~~~ 229 (425)
T PF12897_consen 151 VPMTEDGPDMDMVEELVAEDPSVKGIWCVPKYSNPTGITYSDEVVRRLAAMKTAAPDFRIFWDNAYAVHHLYDE-EPRDA 229 (425)
T ss_dssp EEEETTEE-HHHHHHHTHTSTTEEEEEE-SSS-TTT-----HHHHHHHHHS--SSTT-EEEEE-TTTT-BSSSS-SS---
T ss_pred cCCCCCCCCHHHHHHHHhcCCccceEEeCCCccCCCCccCCHHHHHHHhcCCcCCcCeEEEeecCceEeecccc-ccchh
Confidence 44444445556667765 4555553333 9999999999999999873334689999999984 55322 22232
Q ss_pred --HHHHHhHHh--CCcEEEEechhhh
Q psy207 82 --FAVRYFAQE--GFEFLCSQSFAKN 103 (109)
Q Consensus 82 --~~l~~~~~~--~~~~~v~~SfSK~ 103 (109)
-.+..+.+. .+++++.-|.||-
T Consensus 230 ~~nil~~~~~AGnpdrv~~F~STSKI 255 (425)
T PF12897_consen 230 LLNILDACAKAGNPDRVYVFASTSKI 255 (425)
T ss_dssp ---HHHHHHHTT-TTSEEEEEESTTT
T ss_pred hhHHHHHHHHcCCCCeEEEEeccccc
Confidence 244555543 4689999999994
No 231
>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=95.78 E-value=0.016 Score=47.22 Aligned_cols=65 Identities=17% Similarity=0.122 Sum_probs=42.7
Q ss_pred CCCCeeee----ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhh--
Q psy207 29 PHPKKVNL----SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAK-- 102 (109)
Q Consensus 29 ~~~~kv~L----~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK-- 102 (109)
++++.|.+ ||++..++ +++|+++++++ ++++++|.+|. +.- ..+-+ +.+.. +|++|+||
T Consensus 146 ~~Tk~I~~e~pgnP~~~v~D---i~~I~~iA~~~-gi~livD~T~~---tP~------~~~pl-~~GAD-Ivv~S~TKy~ 210 (432)
T PRK06702 146 DKTKLVYAESLGNPAMNVLN---FKEFSDAAKEL-EVPFIVDNTLA---TPY------LCQAF-EHGAN-IIVHSTTKYI 210 (432)
T ss_pred cCCeEEEEEcCCCccccccC---HHHHHHHHHHc-CCEEEEECCCC---chh------hCChh-hcCCC-EEEEcccccc
Confidence 45667777 66666555 77888888899 99999999983 221 11111 23333 77999999
Q ss_pred ---hhccCC
Q psy207 103 ---NFGLYS 108 (109)
Q Consensus 103 ---~fglyg 108 (109)
+.+|.|
T Consensus 211 ~Ghsd~l~G 219 (432)
T PRK06702 211 DGHASSLGG 219 (432)
T ss_pred CCCcceece
Confidence 555544
No 232
>PRK06058 4-aminobutyrate aminotransferase; Provisional
Probab=95.68 E-value=0.04 Score=44.61 Aligned_cols=55 Identities=24% Similarity=0.272 Sum_probs=40.1
Q ss_pred CCCHHHHHHHHHHHHhCCCcEEEEecccccccC-CChhhhHHHHHHhHHhCCcEEEEechhhhhc
Q psy207 42 DPTEDQWKQLAQLFKERPSLFVFFDSAYQGFAS-GDLERDAFAVRYFAQEGFEFLCSQSFAKNFG 105 (109)
Q Consensus 42 ~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~-g~~~~d~~~l~~~~~~~~~~~v~~SfSK~fg 105 (109)
.++++.|++|.++++++ ++++|+||++.||.. |. .++...+ ...+.++ +++|.+|
T Consensus 236 ~p~~~yl~~lr~lc~~~-gillI~DEV~tGfgRtG~----~fa~~~~-gv~PDiv---~~gK~l~ 291 (443)
T PRK06058 236 VPAEGFLPALLEWCREN-GVVFIADEVQTGFARTGA----WFACEHE-GIVPDLI---TTAKGIA 291 (443)
T ss_pred CCCHHHHHHHHHHHHHc-CCEEEEeccccCCCcChh----hhHHHhc-CCCCCEE---EEccccc
Confidence 46799999999999999 999999999999953 32 2233322 2334544 4589887
No 233
>PRK03715 argD acetylornithine transaminase protein; Provisional
Probab=95.66 E-value=0.029 Score=44.83 Aligned_cols=60 Identities=25% Similarity=0.360 Sum_probs=42.1
Q ss_pred ccCCCC-CCHHHHHHHHHHHHhCCCcEEEEecccccccC-CChhhhHHHHHHhHHhCCcEEEEechhhhhc
Q psy207 37 SVGGCD-PTEDQWKQLAQLFKERPSLFVFFDSAYQGFAS-GDLERDAFAVRYFAQEGFEFLCSQSFAKNFG 105 (109)
Q Consensus 37 ~~~~~~-lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~-g~~~~d~~~l~~~~~~~~~~~v~~SfSK~fg 105 (109)
+.+|.. ++++.|++|.++++++ ++++|+||++.||+. |. -++...+ ...+.+ -+|||.+|
T Consensus 190 ~~gG~~~~~~~~l~~l~~l~~~~-~~llI~DEv~tG~GRtG~----~~a~~~~-gv~PDi---~t~gK~lg 251 (395)
T PRK03715 190 GEGGVIPATREFMQQLRALTKQH-GLLLIVDEVQTGCGRTGT----LFAYELS-GIEPDI---MTLGKGIG 251 (395)
T ss_pred CCCCCccCCHHHHHHHHHHHHHc-CCEEEEeccccCCCCCcc----hhhHhhc-CCCCce---eeehhhhh
Confidence 444544 5899999999999999 999999999999843 32 1222222 233453 47789887
No 234
>PF06838 Met_gamma_lyase: Methionine gamma-lyase ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria [].; PDB: 3JZL_A 3I16_C 3GWP_A 3FD0_B 3HT4_F.
Probab=95.66 E-value=0.045 Score=44.34 Aligned_cols=87 Identities=26% Similarity=0.434 Sum_probs=51.3
Q ss_pred ccCCccCCC-Chhh-chhhhhcCCCCCCeeee-ccCCC----CCCHHHHHHHHHHHHh-CCCcEEEEecccccccCCChh
Q psy207 7 FSSVQQGPP-IEVF-AVNKAYLDDPHPKKVNL-SVGGC----DPTEDQWKQLAQLFKE-RPSLFVFFDSAYQGFASGDLE 78 (109)
Q Consensus 7 f~~v~~~p~-d~~f-~l~~~~~~d~~~~kv~L-~~~~~----~lt~eqw~~i~~~~~~-~p~~~~~~D~AY~gf~~g~~~ 78 (109)
|..|++.+. ..-+ ++.++.+ ++++.|.+ --+|+ .++.+|++++++.+|+ +|++++++|.-|-+|... .|
T Consensus 131 Y~~v~L~~dg~~D~~~i~~~~~--~~tk~v~IQRSrGYs~R~sl~i~~I~~~i~~vk~~~p~~iifVDNCYGEFvE~-~E 207 (403)
T PF06838_consen 131 YREVPLTEDGTIDWEAIKKALK--PNTKMVLIQRSRGYSWRPSLTIEEIKEIIKFVKEINPDVIIFVDNCYGEFVET-QE 207 (403)
T ss_dssp EEE--B-TTSSB-HHHHHHHHH--TTEEEEEEE-S-TTSSS----HHHHHHHHHHHHHH-TTSEEEEE-TTTTTTSS-S-
T ss_pred eEEEeecCCCCcCHHHHHHhhc--cCceEEEEecCCCCCCCCCCCHHHHHHHHHHHHhhCCCeEEEEeCCcceeccc-cC
Confidence 455666552 2222 2233333 55666666 44555 6899999999999997 688999999999999854 22
Q ss_pred hhHHHHHHhHHhCCcEEEEechhhhhc
Q psy207 79 RDAFAVRYFAQEGFEFLCSQSFAKNFG 105 (109)
Q Consensus 79 ~d~~~l~~~~~~~~~~~v~~SfSK~fg 105 (109)
.. +.+..++ +-|+=||-|
T Consensus 208 P~--------~vGADl~-aGSLIKNpG 225 (403)
T PF06838_consen 208 PT--------EVGADLM-AGSLIKNPG 225 (403)
T ss_dssp GG--------GGT-SEE-EEETTSGGG
T ss_pred cc--------ccchhhe-eccceeCCC
Confidence 22 3555644 899999987
No 235
>cd06453 SufS_like Cysteine desulfurase (SufS)-like. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine.
Probab=95.62 E-value=0.027 Score=43.55 Aligned_cols=65 Identities=25% Similarity=0.284 Sum_probs=42.4
Q ss_pred CCCeeee----ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhhc
Q psy207 30 HPKKVNL----SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNFG 105 (109)
Q Consensus 30 ~~~kv~L----~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~fg 105 (109)
.++.|.+ ||||...+. ++|+++++++ ++++++|.+|.. |....+ +.+.+..+ ++.|+.|.+|
T Consensus 139 ~~~~v~~~~~~~~tG~~~~~---~~i~~~~~~~-~~~li~D~a~~~---~~~~~~------~~~~~~d~-~~~s~~K~~~ 204 (373)
T cd06453 139 RTKLVAVTHVSNVLGTINPV---KEIGEIAHEA-GVPVLVDGAQSA---GHMPVD------VQDLGCDF-LAFSGHKMLG 204 (373)
T ss_pred CceEEEEeCcccccCCcCCH---HHHHHHHHHc-CCEEEEEhhhhc---Cceeee------ccccCCCE-EEeccccccC
Confidence 5566666 789988775 4667777788 999999999863 211111 11223443 4568889998
Q ss_pred cCC
Q psy207 106 LYS 108 (109)
Q Consensus 106 lyg 108 (109)
..|
T Consensus 205 ~~g 207 (373)
T cd06453 205 PTG 207 (373)
T ss_pred CCC
Confidence 744
No 236
>PRK07495 4-aminobutyrate aminotransferase; Provisional
Probab=95.61 E-value=0.013 Score=47.29 Aligned_cols=59 Identities=22% Similarity=0.369 Sum_probs=42.3
Q ss_pred CC-CCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhhc
Q psy207 39 GG-CDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNFG 105 (109)
Q Consensus 39 ~~-~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~fg 105 (109)
+| ..++++-|++|.++++++ ++++|+||+|.||.... ..++...+ ...+. +.||||.+|
T Consensus 211 ~G~~~~~~~~l~~l~~l~~~~-g~llI~DEv~tG~gr~G---~~~a~~~~-gv~pD---i~tlsK~l~ 270 (425)
T PRK07495 211 GGFYPAPAAFMKALRELCDQH-GILLIADEVQTGFARTG---KLFAMEHH-EVAAD---LTTMAKGLA 270 (425)
T ss_pred CCCccCCHHHHHHHHHHHHHc-CCEEEEechhhcCCcCC---Cceeeccc-CCCCC---EEeehhhhc
Confidence 55 458999999999999999 99999999999995431 11222211 12233 578899987
No 237
>COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]
Probab=95.54 E-value=0.039 Score=44.64 Aligned_cols=74 Identities=16% Similarity=0.133 Sum_probs=50.0
Q ss_pred Ceeee--ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhH-HhCCcEEEEechhhhhccCC
Q psy207 32 KKVNL--SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFA-QEGFEFLCSQSFAKNFGLYS 108 (109)
Q Consensus 32 ~kv~L--~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~-~~~~~~~v~~SfSK~fglyg 108 (109)
+++.+ +.=.++=+-..+++|+++.++. +.++++|||+-==..|+--+. ..+++- ......++..||||+||-+|
T Consensus 172 ~~~IvtegVfSMdGdiApL~~l~~L~~ky-~a~L~VDEAHa~Gv~G~~GrG--~~e~~g~~~~~vdi~~gTlsKAlGs~G 248 (388)
T COG0156 172 RKLIVTEGVFSMDGDIAPLPELVELAEKY-GALLYVDEAHAVGVLGPNGRG--LAEHFGLEPEEVDIIVGTLGKALGSSG 248 (388)
T ss_pred ceEEEEeccccCCCCcCCHHHHHHHHHHh-CcEEEEEccccccccCCCCcc--HHHHhCCCCccceEEEEEchhhhcccC
Confidence 45555 5555566777889999999999 999999999864444531111 222331 11233788999999999877
No 238
>PRK05769 4-aminobutyrate aminotransferase; Provisional
Probab=95.33 E-value=0.03 Score=45.38 Aligned_cols=56 Identities=20% Similarity=0.368 Sum_probs=39.8
Q ss_pred CCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhhc
Q psy207 42 DPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNFG 105 (109)
Q Consensus 42 ~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~fg 105 (109)
.++++.|++|.++++++ ++++++||++.||.... ..++...+ ...+.++ +|||.+|
T Consensus 238 ~~~~~~l~~l~~l~~~~-g~lli~DEv~tG~gr~G---~~~a~~~~-gv~pDiv---t~~K~l~ 293 (441)
T PRK05769 238 VPPKNFFKELRKLADKY-GILLIDDEVQTGMGRTG---KMFAIEHF-GVEPDII---TLAKAIA 293 (441)
T ss_pred CCCHHHHHHHHHHHHHc-CCEEEEechhhCCCccc---ceehhhcc-CCCCCEE---EEccccc
Confidence 57899999999999999 99999999999985321 11122222 2234544 5899987
No 239
>TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme. This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation.
Probab=95.31 E-value=0.037 Score=43.57 Aligned_cols=52 Identities=27% Similarity=0.211 Sum_probs=35.2
Q ss_pred ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhh
Q psy207 37 SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNF 104 (109)
Q Consensus 37 ~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~f 104 (109)
||+|...+.+ +|+++++++ ++.+++|+||. .++ +.+.+.+. -++++|++|++
T Consensus 160 ~~~g~~~~~~---~i~~~a~~~-gi~vivD~a~~----~~~-------~~~~~~g~-D~~~~S~~K~l 211 (363)
T TIGR01437 160 CVQKSMLSVE---DAAQVAQEH-NLPLIVDAAAE----EDL-------QKYYRLGA-DLVIYSGAKAI 211 (363)
T ss_pred CCcCCcCCHH---HHHHHHHHc-CCeEEEECCCC----Cch-------HHHHHcCC-CEEEEeCCccc
Confidence 5677777765 567888899 99999999985 112 11112333 35679999966
No 240
>PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=95.25 E-value=0.05 Score=44.30 Aligned_cols=65 Identities=15% Similarity=0.097 Sum_probs=41.9
Q ss_pred CCCCeeee----ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhh
Q psy207 29 PHPKKVNL----SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNF 104 (109)
Q Consensus 29 ~~~~kv~L----~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~f 104 (109)
++++.|.+ ||+|...+- ++|+++++++ ++++++|.+... +-.. . .+ +.+..++ ++|++|.+
T Consensus 154 ~~tklV~ie~~sNp~G~v~Dl---~~I~~la~~~-gi~liVD~t~a~---~~~~-~--pl----~~GaDiv-v~S~tK~l 218 (436)
T PRK07812 154 PNTKAFFAETISNPQIDVLDI---PGVAEVAHEA-GVPLIVDNTIAT---PYLI-R--PL----EHGADIV-VHSATKYL 218 (436)
T ss_pred CCCeEEEEECCCCCCCeecCH---HHHHHHHHHc-CCEEEEECCCcc---cccC-C--ch----hcCCCEE-EEeccccc
Confidence 45566665 777776665 5666777788 999999997432 2111 1 12 3455655 59999999
Q ss_pred ccCC
Q psy207 105 GLYS 108 (109)
Q Consensus 105 glyg 108 (109)
|--|
T Consensus 219 gg~G 222 (436)
T PRK07812 219 GGHG 222 (436)
T ss_pred CCCC
Confidence 8543
No 241
>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.
Probab=95.21 E-value=0.055 Score=41.54 Aligned_cols=63 Identities=16% Similarity=0.191 Sum_probs=40.4
Q ss_pred CCCeeee----ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhhc
Q psy207 30 HPKKVNL----SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNFG 105 (109)
Q Consensus 30 ~~~kv~L----~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~fg 105 (109)
.++.|.+ ||+|...+.+ +|.++++++ ++++++|++|. +.. ..-+ + .+.+..++ ..|.+|.||
T Consensus 124 ~~~~v~i~~~~~~~G~~~~~~---~i~~~a~~~-~~~li~D~~~~-~g~--~~~~---~---~~~~~d~~-~~s~~K~l~ 189 (356)
T cd06451 124 DIKAVTLTHNETSTGVLNPLE---GIGALAKKH-DALLIVDAVSS-LGG--EPFR---M---DEWGVDVA-YTGSQKALG 189 (356)
T ss_pred CCCEEEEeccCCCcccccCHH---HHHHHHHhc-CCEEEEeeehh-ccC--cccc---c---cccCccEE-EecCchhcc
Confidence 4566666 7799887755 566667788 99999999753 421 1111 1 12344544 568899988
Q ss_pred c
Q psy207 106 L 106 (109)
Q Consensus 106 l 106 (109)
.
T Consensus 190 ~ 190 (356)
T cd06451 190 A 190 (356)
T ss_pred C
Confidence 5
No 242
>PRK14012 cysteine desulfurase; Provisional
Probab=95.08 E-value=0.055 Score=42.70 Aligned_cols=66 Identities=17% Similarity=0.213 Sum_probs=42.2
Q ss_pred CCCCeeee----ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhh
Q psy207 29 PHPKKVNL----SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNF 104 (109)
Q Consensus 29 ~~~~kv~L----~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~f 104 (109)
..++.|.+ ||||...+ +++|.++++++ ++++++|.|+. +..-.+ + + .+.+..+ ++.|+.|.+
T Consensus 143 ~~t~lv~~~~~~n~tG~~~~---~~~I~~la~~~-g~~vivD~a~~-~g~~~~--~---~---~~~~~D~-~~~s~~K~~ 208 (404)
T PRK14012 143 DDTILVSIMHVNNEIGVIQD---IAAIGEICRER-GIIFHVDAAQS-VGKVPI--D---L---SKLKVDL-MSFSAHKIY 208 (404)
T ss_pred CCCEEEEEECcCCCccchhh---HHHHHHHHHHc-CCEEEEEcchh-cCCccc--C---c---ccCCCCE-EEEehhhcc
Confidence 34455555 88897775 56788888899 99999999864 322111 1 1 1223444 455889988
Q ss_pred ccCC
Q psy207 105 GLYS 108 (109)
Q Consensus 105 glyg 108 (109)
|-.|
T Consensus 209 gp~g 212 (404)
T PRK14012 209 GPKG 212 (404)
T ss_pred CCCc
Confidence 7554
No 243
>PRK08297 L-lysine aminotransferase; Provisional
Probab=95.01 E-value=0.08 Score=43.02 Aligned_cols=59 Identities=15% Similarity=0.256 Sum_probs=42.2
Q ss_pred CCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhhccC
Q psy207 41 CDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNFGLY 107 (109)
Q Consensus 41 ~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~fgly 107 (109)
..++++-|++|.++++++ ++++|+||++.||..-. ..++...+ ...+.++ +|+|.+++.
T Consensus 241 ~~pp~~yl~~lr~lc~~~-g~llI~DEV~tGfGRtG---~~~a~~~~-gv~PDiv---~~gK~l~~~ 299 (443)
T PRK08297 241 NHFRPEFFAAMRELCDEH-DALLIFDEVQTGVGLTG---TAWAYQQL-GVRPDIV---AFGKKTQVC 299 (443)
T ss_pred cCCCHHHHHHHHHHHHHc-CCEEEEechhhccCccc---hHHHHHhc-CCCCCEE---Eeccccccc
Confidence 468899999999999999 99999999999995321 12233332 2346655 478887654
No 244
>PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=94.76 E-value=0.076 Score=43.03 Aligned_cols=56 Identities=16% Similarity=0.256 Sum_probs=40.0
Q ss_pred CCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhhc
Q psy207 42 DPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNFG 105 (109)
Q Consensus 42 ~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~fg 105 (109)
.++++-|+++.++++++ ++++|+||+..||+... .-++...+ ...+.+++ |+|.+|
T Consensus 224 ~~~~~yl~~l~~lc~~~-g~llI~DEv~tG~GrtG---~~~a~~~~-gv~PDiv~---~gK~l~ 279 (429)
T PRK06173 224 FYSPTYLVKARELCDQY-GVLLIFDEIATGFGRTG---KLFALEHA-GVVPDIMC---IGKALT 279 (429)
T ss_pred cCCHHHHHHHHHHHHHc-CCeEEecchhcCCCcCC---cchHHHhc-CCCCCEEE---eehhhh
Confidence 48999999999999999 99999999999985321 11223332 23455443 899875
No 245
>TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase. All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae.
Probab=94.74 E-value=0.067 Score=43.18 Aligned_cols=56 Identities=20% Similarity=0.242 Sum_probs=38.8
Q ss_pred CCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhhc
Q psy207 42 DPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNFG 105 (109)
Q Consensus 42 ~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~fg 105 (109)
.++.+.|++|.++++++ ++++|+||+..||+... ..+....+ ...+.+++ +||.+|
T Consensus 225 ~~~~~~l~~l~~lc~~~-~~llI~DEv~tG~Gr~G---~~~~~~~~-~v~pDi~~---~gK~l~ 280 (427)
T TIGR00508 225 FYHPTYLKRVQALCKQY-DILLIADEIATGFGRTG---KLFACEHA-GVVPDILC---VGKALT 280 (427)
T ss_pred cCCHHHHHHHHHHHHHc-CCEEEEeccccCCCcCC---ccchhhhc-CCCCCEEE---echhhh
Confidence 56899999999999999 99999999998884321 11122222 23455443 799874
No 246
>PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional
Probab=94.46 E-value=0.11 Score=42.16 Aligned_cols=55 Identities=15% Similarity=0.219 Sum_probs=40.1
Q ss_pred CCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhhc
Q psy207 42 DPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNFG 105 (109)
Q Consensus 42 ~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~fg 105 (109)
.+.++-|++|.++++++ +.++|+||+..||-.|. ..+...+ ...+.++ +|||.+|
T Consensus 218 ~p~~~yl~~l~~lc~~~-g~llI~DEv~tG~R~G~----~ga~~~~-gv~PDi~---~~gK~lg 272 (433)
T PRK00615 218 LPKPGFIEGIIQTCRRT-GSLSIMDEVVTGFRVAQ----GGAAAIY-HVKPDIT---VYGKILG 272 (433)
T ss_pred cCCHHHHHHHHHHHHHc-CCEEEEEcccccccccH----hHHHHhc-CCCCCeE---EEccccc
Confidence 56788999999999999 99999999999994442 2222222 2345554 4899886
No 247
>PRK04013 argD acetylornithine/acetyl-lysine aminotransferase; Provisional
Probab=93.96 E-value=0.14 Score=40.74 Aligned_cols=56 Identities=18% Similarity=0.344 Sum_probs=41.9
Q ss_pred CCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhhc
Q psy207 41 CDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNFG 105 (109)
Q Consensus 41 ~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~fg 105 (109)
..++++-|+++.++++++ ++++|+||+..||-.|. -++...+ ...+.++ +|+|.+|
T Consensus 178 ~~~~~~yl~~lr~lc~~~-gillI~DEv~tG~RtG~----~~a~~~~-gv~PDiv---~~gK~lg 233 (364)
T PRK04013 178 VPAKEEFVKTLRDLTEDV-GALLIADEVQSGLRTGK----FLAIEHY-KVEPDIV---TMGKGIG 233 (364)
T ss_pred cCCCHHHHHHHHHHHHHc-CCEEEEechhhcCCCCc----hhHHHhc-CCCCCEE---Eeccccc
Confidence 367889999999999999 99999999999996664 2233333 3456644 4588876
No 248
>PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional
Probab=93.92 E-value=0.068 Score=42.19 Aligned_cols=41 Identities=15% Similarity=0.143 Sum_probs=30.3
Q ss_pred CCCeee-eccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccc-cccC
Q psy207 30 HPKKVN-LSVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQ-GFAS 74 (109)
Q Consensus 30 ~~~kv~-L~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~-gf~~ 74 (109)
.++.|. .+++|... ++++|+++++++ +++++.|.||. |...
T Consensus 121 ~tkav~~~~~~G~~~---d~~~i~~~a~~~-gi~vi~D~a~a~g~~~ 163 (379)
T PRK11658 121 RTKAIIPVHYAGAPA---DLDAIRAIGERY-GIPVIEDAAHAVGTYY 163 (379)
T ss_pred CCeEEEEeCCCCCcC---CHHHHHHHHHHc-CCeEEEECCCccCCeE
Confidence 455554 38888864 466788888899 99999999996 5443
No 249
>PRK00451 glycine dehydrogenase subunit 1; Validated
Probab=93.91 E-value=0.1 Score=41.75 Aligned_cols=65 Identities=11% Similarity=0.169 Sum_probs=38.1
Q ss_pred CCCCeeee---ccCCCCCCHHHHHHHHHHHHhCCCcEEEE--ecccccccCCChhhhHHHHHHhHHhCCcEEEE--echh
Q psy207 29 PHPKKVNL---SVGGCDPTEDQWKQLAQLFKERPSLFVFF--DSAYQGFASGDLERDAFAVRYFAQEGFEFLCS--QSFA 101 (109)
Q Consensus 29 ~~~~kv~L---~~~~~~lt~eqw~~i~~~~~~~p~~~~~~--D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~--~SfS 101 (109)
++++.|.+ |+||... .+++|+++++++ ++++++ |....|+..- . .+.+..+++. ++||
T Consensus 203 ~~t~~v~l~~pn~tG~v~---~l~~I~~~a~~~-~~~~iv~~d~~~~g~~~~----~-------~~~~~D~~~~s~~k~~ 267 (447)
T PRK00451 203 DDTAAVVVQYPNFFGVIE---DLEEIAEIAHAG-GALFIVGVDPVSLGLLKP----P-------GEYGADIVVGEGQPLG 267 (447)
T ss_pred CCeEEEEEECCCCCCeeC---CHHHHHHHHHHC-CCEEEEEcChHHhccCCC----c-------ccCCCCEEEECCCcCC
Confidence 34555666 7787764 478888888899 887776 5443332210 0 0123334433 5788
Q ss_pred hhhccCC
Q psy207 102 KNFGLYS 108 (109)
Q Consensus 102 K~fglyg 108 (109)
|.|.+.|
T Consensus 268 ~~~~~~G 274 (447)
T PRK00451 268 IPLSFGG 274 (447)
T ss_pred CCCCCCC
Confidence 8877655
No 250
>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases. It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....
Probab=93.90 E-value=0.083 Score=40.85 Aligned_cols=74 Identities=26% Similarity=0.302 Sum_probs=44.9
Q ss_pred CCCCeeee-c----cCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhh
Q psy207 29 PHPKKVNL-S----VGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKN 103 (109)
Q Consensus 29 ~~~~kv~L-~----~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~ 103 (109)
+.++.|.| | .+|..++.+++++|.++++++ ++.+..|=|=..-+.-.+.. .++.+. ..... |..|++|+
T Consensus 123 ~~~~~v~le~t~~~~GG~~~s~~el~ai~~~a~~~-gl~lhmDGARl~~a~~~~~~---~~~e~~-~~~D~-v~~~~tK~ 196 (290)
T PF01212_consen 123 PQPAVVSLENTTELAGGTVYSLEELRAISELAREH-GLPLHMDGARLANAAAALGV---SLAEIA-AGADS-VSFGGTKN 196 (290)
T ss_dssp GGEEEEEEESSBTTTTSB---HHHHHHHHHHHHHH-T-EEEEEETTHHHHHCHHHH---HHHHHH-TTSSE-EEEETTST
T ss_pred CCccEEEEEecCcCCCCeeCCHHHHHHHHHHHHhC-ceEEEEehhhHHHhhhcccc---cHHHHh-hhCCE-EEEEEEcc
Confidence 44567777 2 247899999999999999999 99999997733222211111 223333 34443 47899999
Q ss_pred hccCC
Q psy207 104 FGLYS 108 (109)
Q Consensus 104 fglyg 108 (109)
.|+.+
T Consensus 197 ~g~~~ 201 (290)
T PF01212_consen 197 GGAPG 201 (290)
T ss_dssp T-SSS
T ss_pred ccccc
Confidence 99853
No 251
>PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional
Probab=93.72 E-value=0.27 Score=40.29 Aligned_cols=58 Identities=26% Similarity=0.416 Sum_probs=41.8
Q ss_pred CCC-CCCHHHHHHHHHHHHhCCCcEEEEeccccccc-CCChhhhHHHHHHhHHhCCcEEEEechhhhhc
Q psy207 39 GGC-DPTEDQWKQLAQLFKERPSLFVFFDSAYQGFA-SGDLERDAFAVRYFAQEGFEFLCSQSFAKNFG 105 (109)
Q Consensus 39 ~~~-~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~-~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~fg 105 (109)
+|. .++++-|+++.++++++ ++++|+||+..||+ .|. .++.+.+ ...+.++ +|||.+|
T Consensus 244 ~G~~~pp~~yl~~lr~lc~~~-g~llI~DEV~tG~GRtG~----~~a~e~~-gv~PDiv---t~gK~lg 303 (459)
T PRK11522 244 GGVILPPEGYLTAVRKLCDEF-GALLILDEVQTGMGRTGK----MFACEHE-NVQPDIL---CLAKALG 303 (459)
T ss_pred CCCccCCHHHHHHHHHHHHHc-CCEEEeccceecCCccch----hhhhhcc-CCCCCEE---Eechhhh
Confidence 344 57888999999999999 99999999999984 332 2333332 2345543 7899987
No 252
>PRK06082 4-aminobutyrate aminotransferase; Provisional
Probab=93.59 E-value=0.21 Score=40.80 Aligned_cols=60 Identities=18% Similarity=0.487 Sum_probs=43.3
Q ss_pred ccCCCCCCHHHHHHHHHHHHhCCCcEEEEeccccccc-CCChhhhHHHHHHhHHhCCcEEEEechhhhhc
Q psy207 37 SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFA-SGDLERDAFAVRYFAQEGFEFLCSQSFAKNFG 105 (109)
Q Consensus 37 ~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~-~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~fg 105 (109)
+-++..++++-|+++.++++++ +++.|+||+..||+ .|. .++.+.+ ...+.+++ |+|.+|
T Consensus 240 g~g~~~~~~~yl~~lr~lc~~~-g~llI~DEV~tG~GRtG~----~fa~e~~-gv~PDiv~---~gKgl~ 300 (459)
T PRK06082 240 NTDVQVPSKAYWKRVREICDKH-NVLLIIDEIPNGMGRTGE----WFTHQAY-GIEPDILC---IGKGLG 300 (459)
T ss_pred CCCCcCCCHHHHHHHHHHHHHc-CCEEEEechhhCCCccch----hhHhHhh-CCCCCEEE---eccccc
Confidence 3345578889999999999999 99999999999985 332 2233333 23466554 899876
No 253
>PRK06209 glutamate-1-semialdehyde 2,1-aminomutase; Provisional
Probab=93.52 E-value=0.43 Score=38.54 Aligned_cols=60 Identities=15% Similarity=0.236 Sum_probs=42.1
Q ss_pred ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhhc
Q psy207 37 SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNFG 105 (109)
Q Consensus 37 ~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~fg 105 (109)
...|..++++-|++|.++++++ +.+.|+||+..||..+. ..........+.+ -+|||.+|
T Consensus 195 pv~g~~~~~~~l~~l~~lc~~~-g~lLI~DEv~tG~~~~~-----~g~~~~~gv~PDi---~t~gK~lg 254 (431)
T PRK06209 195 PATADEPQDGFLHEVRRLCHEN-GALFILDEMITGFRWHM-----RGAQKLYGIVPDL---SCFGKALG 254 (431)
T ss_pred cccCCCCCHHHHHHHHHHHHHc-CCEEEEEcccccCCcCc-----chhhHHhCCCcce---eeehhhhc
Confidence 4556688899999999999999 99999999999885321 1122111223443 56788886
No 254
>TIGR03251 LAT_fam L-lysine 6-transaminase. Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites.
Probab=93.49 E-value=0.25 Score=39.86 Aligned_cols=56 Identities=16% Similarity=0.250 Sum_probs=39.9
Q ss_pred CCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhh
Q psy207 41 CDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNF 104 (109)
Q Consensus 41 ~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~f 104 (109)
..++++-|++|.++++++ ++++|+||++.||.... ..++...+ ...+.++ +|+|.+
T Consensus 234 ~~~~~~~l~~l~~lc~~~-g~llI~DEV~tG~GrtG---~~~a~~~~-gv~PDi~---~~gK~~ 289 (431)
T TIGR03251 234 NHFRPEFLRAMRALCDEH-DALLIFDEVQTGVGLTG---TAWAYQQL-GVQPDIV---AFGKKT 289 (431)
T ss_pred cCCCHHHHHHHHHHHHHc-CCEEEEecchhccCccc---hHHHHHhc-CCCCCEE---EecccC
Confidence 357899999999999999 99999999999996431 22333332 2345655 367765
No 255
>TIGR03402 FeS_nifS cysteine desulfurase NifS. Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403.
Probab=93.43 E-value=0.19 Score=39.11 Aligned_cols=66 Identities=18% Similarity=0.186 Sum_probs=42.8
Q ss_pred CCCCeeee----ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhh
Q psy207 29 PHPKKVNL----SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNF 104 (109)
Q Consensus 29 ~~~~kv~L----~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~f 104 (109)
++++.|.+ ||||..++.+ +|.++++++ ++++++|.++. + |..+-|. .+.+.. +++.|..|.+
T Consensus 135 ~~~~lv~i~~~~n~tG~~~~~~---~I~~l~~~~-g~~vivD~~~~-~--g~~~~~~------~~~~~D-~~~~s~~K~~ 200 (379)
T TIGR03402 135 DDTALVSVMWANNETGTIFPIE---EIGEIAKER-GALFHTDAVQA-V--GKIPIDL------KEMNID-MLSLSGHKLH 200 (379)
T ss_pred CCcEEEEEEcccCCeeecccHH---HHHHHHHHc-CCEEEEECccc-c--cccccCc------ccCCCC-EEEEcHHHcC
Confidence 34555555 8999998865 677788899 99999998864 3 3221121 123344 4456777987
Q ss_pred ccCC
Q psy207 105 GLYS 108 (109)
Q Consensus 105 glyg 108 (109)
|..|
T Consensus 201 gp~G 204 (379)
T TIGR03402 201 GPKG 204 (379)
T ss_pred CCCc
Confidence 7665
No 256
>TIGR03372 putres_am_tran putrescine aminotransferase. Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine.
Probab=93.38 E-value=0.21 Score=40.78 Aligned_cols=60 Identities=25% Similarity=0.371 Sum_probs=42.8
Q ss_pred ccCCC-CCCHHHHHHHHHHHHhCCCcEEEEeccccccc-CCChhhhHHHHHHhHHhCCcEEEEechhhhhc
Q psy207 37 SVGGC-DPTEDQWKQLAQLFKERPSLFVFFDSAYQGFA-SGDLERDAFAVRYFAQEGFEFLCSQSFAKNFG 105 (109)
Q Consensus 37 ~~~~~-~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~-~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~fg 105 (109)
+-+|. .++++-|+++.++++++ +.++|+||+..||+ .|. -++.+.+ ...+.++ +|||.+|
T Consensus 235 g~gG~~~p~~~yl~~l~~lc~~~-g~llI~DEV~tG~GRtG~----~~a~e~~-gv~PDiv---t~gK~lg 296 (442)
T TIGR03372 235 GEGGVILPPEGYLPAVRALCDEF-GALLILDEVQTGMGRTGK----MFACEHE-GVQPDIL---CLAKALG 296 (442)
T ss_pred CCCCcccCCHHHHHHHHHHHHHc-CCEEEEeecccCCCcccc----chhhhhc-CCCCCee---eehhhhc
Confidence 33444 56788999999999999 99999999999985 332 2344333 2345644 4899987
No 257
>PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=93.30 E-value=0.22 Score=40.26 Aligned_cols=58 Identities=16% Similarity=0.215 Sum_probs=40.5
Q ss_pred CCC-CCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhh
Q psy207 39 GGC-DPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNF 104 (109)
Q Consensus 39 ~~~-~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~f 104 (109)
+|+ .++++-|+++.++++++ +++.|+||+..||.... ..++...+ ...+.++ +|+|.+
T Consensus 214 gG~~~~~~~~l~~lr~lc~~~-g~llI~DEv~tG~GrtG---~~~a~~~~-gv~PDi~---t~gK~l 272 (422)
T PRK05630 214 GGMRFHDVALIEGVRTLCDKH-DILLIADEIATGFGRTG---ELFATLAA-GVTPDIM---CVGKAL 272 (422)
T ss_pred CCcccCCHHHHHHHHHHHHHc-CCEEEEecceeCCCcCc---hhhHHHhc-CCCCCee---eeechh
Confidence 344 57888999999999999 99999999999995321 12222222 2345544 779977
No 258
>TIGR02006 IscS cysteine desulfurase IscS. This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors.
Probab=93.09 E-value=0.22 Score=39.34 Aligned_cols=65 Identities=20% Similarity=0.254 Sum_probs=41.9
Q ss_pred CCCeeee----ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhhc
Q psy207 30 HPKKVNL----SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNFG 105 (109)
Q Consensus 30 ~~~kv~L----~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~fg 105 (109)
+++.|.+ ||||...+ +++|.++++++ ++++++|++.. + |..+-|. .+.+.. +++.|..|.+|
T Consensus 142 ~~~lv~v~~~~n~tG~~~~---~~~I~~l~~~~-g~~livD~a~a-~--g~~~~~~------~~~~~D-~~~~s~~K~~g 207 (402)
T TIGR02006 142 DTILVSIMHVNNEIGVIQD---IAAIGEICRER-KVFFHVDAAQS-V--GKIPINV------NELKVD-LMSISGHKIYG 207 (402)
T ss_pred CCEEEEEECCCcCceeccc---HHHHHHHHHHc-CCEEEEEcchh-c--CCcccCc------cccCCC-EEEEehhhhcC
Confidence 3445555 88998875 66788888899 99999999963 3 3211111 123444 44667779888
Q ss_pred cCC
Q psy207 106 LYS 108 (109)
Q Consensus 106 lyg 108 (109)
-.|
T Consensus 208 p~G 210 (402)
T TIGR02006 208 PKG 210 (402)
T ss_pred CCc
Confidence 655
No 259
>PRK05639 4-aminobutyrate aminotransferase; Provisional
Probab=93.02 E-value=0.3 Score=39.91 Aligned_cols=60 Identities=25% Similarity=0.522 Sum_probs=43.0
Q ss_pred ccCCC-CCCHHHHHHHHHHHHhCCCcEEEEeccccccc-CCChhhhHHHHHHhHHhCCcEEEEechhhhhc
Q psy207 37 SVGGC-DPTEDQWKQLAQLFKERPSLFVFFDSAYQGFA-SGDLERDAFAVRYFAQEGFEFLCSQSFAKNFG 105 (109)
Q Consensus 37 ~~~~~-~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~-~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~fg 105 (109)
+-+|+ .++++-|++|.++++++ +++.|+||+..||. .|. -++...+ ...+.+++ |+|.+|
T Consensus 233 g~gG~~~p~~~yl~~l~~lc~~~-g~llI~DEv~tG~GrtG~----~~a~~~~-gv~PDiv~---~gK~l~ 294 (457)
T PRK05639 233 GDAGIVVPPENFFKELKKLLDEH-GILLVMDEVQTGIGRTGK----WFASEWF-EVKPDLII---FGKGVA 294 (457)
T ss_pred CCCCCcCCCHHHHHHHHHHHHHc-CCEEEEechhhccCcCch----HHHHHhc-CCCCCEEE---echhhc
Confidence 33454 67899999999999999 99999999999985 332 2233322 23466554 899886
No 260
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=92.84 E-value=0.29 Score=39.77 Aligned_cols=66 Identities=20% Similarity=0.184 Sum_probs=48.4
Q ss_pred CCCCeeee-ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhhcc
Q psy207 29 PHPKKVNL-SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNFGL 106 (109)
Q Consensus 29 ~~~~kv~L-~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~fgl 106 (109)
++++.|+| .|+--.+.--++++|+++++++ +.++++|.-+..-..-+ .+ +.+.. +|++|.+|.+|-
T Consensus 148 ~~tk~v~lEtPsNP~l~v~DI~~i~~~A~~~-g~~vvVDNTfatP~~q~------PL----~~GaD-IVvhSaTKyl~G 214 (396)
T COG0626 148 PNTKLVFLETPSNPLLEVPDIPAIARLAKAY-GALVVVDNTFATPVLQR------PL----ELGAD-IVVHSATKYLGG 214 (396)
T ss_pred cCceEEEEeCCCCcccccccHHHHHHHHHhc-CCEEEEECCcccccccC------hh----hcCCC-EEEEeccccccC
Confidence 57888888 6666666777788888888899 89999998876543221 33 34444 669999999873
No 261
>PRK07678 aminotransferase; Validated
Probab=92.55 E-value=0.3 Score=39.74 Aligned_cols=56 Identities=20% Similarity=0.381 Sum_probs=41.3
Q ss_pred CCCCHHHHHHHHHHHHhCCCcEEEEeccccccc-CCChhhhHHHHHHhHHhCCcEEEEechhhhhc
Q psy207 41 CDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFA-SGDLERDAFAVRYFAQEGFEFLCSQSFAKNFG 105 (109)
Q Consensus 41 ~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~-~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~fg 105 (109)
..++++-|+++.++++++ +++.|+||+.-||. .|. .++...+ ...+.++ +|+|.+|
T Consensus 229 ~~~~~~fl~~lr~lc~~~-g~llI~DEV~tGfGRtG~----~~~~~~~-gv~PDiv---t~gK~lg 285 (451)
T PRK07678 229 LMPPQDYMKAVKEICQKH-GALLISDEVICGFGRTGK----AFGFMNY-GVKPDII---TMAKGIT 285 (451)
T ss_pred ccCCHHHHHHHHHHHHHc-CCEEEEeehhhcCCcCch----hHHHHhc-CCCCCEE---Eeecccc
Confidence 357889999999999999 99999999999995 342 3344333 3446644 6688765
No 262
>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....
Probab=92.53 E-value=0.3 Score=39.28 Aligned_cols=64 Identities=20% Similarity=0.249 Sum_probs=42.1
Q ss_pred CCCeeee-ccCCCCCCHHHHHHHHHHHHhCCC-cEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhhc
Q psy207 30 HPKKVNL-SVGGCDPTEDQWKQLAQLFKERPS-LFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNFG 105 (109)
Q Consensus 30 ~~~kv~L-~~~~~~lt~eqw~~i~~~~~~~p~-~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~fg 105 (109)
+++.|.+ .|+--.+.--++++|+++++++ + +++++|..+.....=+ .+ +.+.. +|++|.+|.++
T Consensus 140 ~t~~v~~EspsNP~l~v~Dl~~i~~~a~~~-g~~~~vVDnT~atp~~~~------pL----~~GaD-ivv~S~TKyl~ 205 (386)
T PF01053_consen 140 NTKLVFLESPSNPTLEVPDLEAIAKLAKEH-GDILVVVDNTFATPYNQN------PL----ELGAD-IVVHSATKYLS 205 (386)
T ss_dssp TEEEEEEESSBTTTTB---HHHHHHHHHHT-TT-EEEEECTTTHTTTC-------GG----GGT-S-EEEEETTTTTT
T ss_pred cceEEEEEcCCCcccccccHHHHHHHHHHh-CCceEEeeccccceeeec------cC----cCCce-EEEeecccccc
Confidence 6677777 5555567778888899999999 8 9999998875442111 22 23434 66899999987
No 263
>PRK13520 L-tyrosine decarboxylase; Provisional
Probab=92.47 E-value=0.15 Score=39.14 Aligned_cols=33 Identities=24% Similarity=0.426 Sum_probs=27.2
Q ss_pred ccCCCCCCHHHHHHHHHHHHhCCCcEEEEeccccccc
Q psy207 37 SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFA 73 (109)
Q Consensus 37 ~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~ 73 (109)
|+||...+ +++|.++++++ ++++++|+||.++.
T Consensus 162 ~~tG~~~~---l~~I~~l~~~~-g~~livD~a~~~~~ 194 (371)
T PRK13520 162 TELGQVDP---IPELSKIALEN-GIFLHVDAAFGGFV 194 (371)
T ss_pred cCCcccCC---HHHHHHHHHHc-CCCEEEEecchhHH
Confidence 68888766 66777778889 99999999998765
No 264
>PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated
Probab=92.42 E-value=0.19 Score=40.71 Aligned_cols=55 Identities=18% Similarity=0.264 Sum_probs=38.2
Q ss_pred CCCHHHHHHHHHHHHhCCCcEEEEecccccccC-CChhhhHHHHHHhHHhCCcEEEEechhhhhc
Q psy207 42 DPTEDQWKQLAQLFKERPSLFVFFDSAYQGFAS-GDLERDAFAVRYFAQEGFEFLCSQSFAKNFG 105 (109)
Q Consensus 42 ~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~-g~~~~d~~~l~~~~~~~~~~~v~~SfSK~fg 105 (109)
.++++-|++|.++++++ ++++|+||+..||+. |. -++...+ ...+.++ +|||.+|
T Consensus 222 ~~~~~~L~~l~~lc~~~-g~lLI~DEv~tG~GrtG~----~fa~~~~-gv~PDi~---t~gK~l~ 277 (428)
T PRK07986 222 IYHPEWLKRVRKLCDRE-GILLIADEIATGFGRTGK----LFACEHA-GIAPDIL---CLGKALT 277 (428)
T ss_pred cCCHHHHHHHHHHHHHc-CCEEEEeccccCCccCCC----eeeeccc-CCCCCEE---Eechhhh
Confidence 45779999999999999 999999999999842 21 1111211 2234544 4899875
No 265
>PLN02482 glutamate-1-semialdehyde 2,1-aminomutase
Probab=92.33 E-value=0.34 Score=39.93 Aligned_cols=56 Identities=23% Similarity=0.366 Sum_probs=40.6
Q ss_pred CCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhhc
Q psy207 41 CDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNFG 105 (109)
Q Consensus 41 ~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~fg 105 (109)
..+.++-|++|.++++++ ++++|+||+..||-.|. ..+...+ ...+.+ .+|+|.+|
T Consensus 262 i~p~~~fl~~lr~lc~~~-g~lLI~DEV~tGfR~g~----~ga~~~~-gv~PDi---~t~gK~lg 317 (474)
T PLN02482 262 IVPKKEFLEGLREITKEN-GALLVFDEVMTGFRIAY----GGAQEYF-GITPDL---TTLGKVIG 317 (474)
T ss_pred cCCCHHHHHHHHHHHHHc-CCEEEEeccccCeecCc----chHhHHh-CCCCCE---EEecchhh
Confidence 356789999999999999 99999999999995442 1222222 234554 47899887
No 266
>PRK13360 omega amino acid--pyruvate transaminase; Provisional
Probab=92.25 E-value=0.26 Score=40.01 Aligned_cols=55 Identities=24% Similarity=0.481 Sum_probs=39.7
Q ss_pred CCCHHHHHHHHHHHHhCCCcEEEEeccccccc-CCChhhhHHHHHHhHHhCCcEEEEechhhhhc
Q psy207 42 DPTEDQWKQLAQLFKERPSLFVFFDSAYQGFA-SGDLERDAFAVRYFAQEGFEFLCSQSFAKNFG 105 (109)
Q Consensus 42 ~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~-~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~fg 105 (109)
.++++-|++|.++++++ ++++|+||+..||+ .|.. ++...+ ...+.+ .+|||.+|
T Consensus 232 ~~~~~fl~~lr~lc~~~-g~llI~DEv~tG~GrtG~~----~a~~~~-gv~PDi---vt~gK~l~ 287 (442)
T PRK13360 232 IPPKGYLQRLREICDKH-GILLIFDEVITGFGRLGAP----FAAQYF-GVTPDL---LTCAKGLT 287 (442)
T ss_pred cCCHHHHHHHHHHHHHc-CCEEEEechhhCCCCCccc----hhhhhc-CCCCce---eeeeeccc
Confidence 57889999999999999 99999999999994 3421 222222 223453 37899875
No 267
>PLN02760 4-aminobutyrate:pyruvate transaminase
Probab=92.20 E-value=0.31 Score=40.44 Aligned_cols=56 Identities=16% Similarity=0.307 Sum_probs=41.1
Q ss_pred CCCCHHHHHHHHHHHHhCCCcEEEEeccccccc-CCChhhhHHHHHHhHHhCCcEEEEechhhhhc
Q psy207 41 CDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFA-SGDLERDAFAVRYFAQEGFEFLCSQSFAKNFG 105 (109)
Q Consensus 41 ~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~-~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~fg 105 (109)
..++++-|++|.++++++ ++++|+||+..||+ .|. .++...+ ...+. .-+|+|.+|
T Consensus 276 ~~p~~~yl~~lr~lc~~~-g~lLI~DEV~TGfGRtG~----~~a~e~~-gv~PD---ivtlgK~lg 332 (504)
T PLN02760 276 IPPPATYFEKIQAVLKKY-DILFIADEVICAFGRLGT----MFGCDKY-NIKPD---LVSLAKALS 332 (504)
T ss_pred cCCCHHHHHHHHHHHHHc-CCEEEecchhhCCcccch----hhHHHhc-CCCCc---EEEeccccc
Confidence 367899999999999999 99999999999994 442 2333332 23355 356788875
No 268
>PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C ....
Probab=92.10 E-value=0.13 Score=40.28 Aligned_cols=56 Identities=23% Similarity=0.541 Sum_probs=38.5
Q ss_pred CCCCHHHHHHHHHHHHhCCCcEEEEeccccccc-CCChhhhHHHHHHhHHhCCcEEEEechhhhhc
Q psy207 41 CDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFA-SGDLERDAFAVRYFAQEGFEFLCSQSFAKNFG 105 (109)
Q Consensus 41 ~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~-~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~fg 105 (109)
..++++-|++|.++++++ ++++|+||...||. .|.+ ++...+ ...+.++ +|+|..|
T Consensus 193 ~~~~~~~l~~l~~lc~~~-gillI~DEV~tG~gRtG~~----~a~~~~-gv~PDiv---~~gK~l~ 249 (339)
T PF00202_consen 193 IPPPPEYLRELRELCREH-GILLIADEVQTGFGRTGKF----FASEHY-GVDPDIV---TFGKGLG 249 (339)
T ss_dssp BEE-TTHHHHHHHHHHHT-T-EEEEEETTTTTTTTSSS----SGHHHH-TSSSSEE---EEEGGGG
T ss_pred cccccchhhehccccccc-ccceecccccccccccCCc----cceecc-cccCccc---ccccchh
Confidence 456788889999999999 99999999999994 4431 222332 3556754 4568765
No 269
>PRK07480 putative aminotransferase; Validated
Probab=91.90 E-value=0.39 Score=39.23 Aligned_cols=58 Identities=21% Similarity=0.485 Sum_probs=41.0
Q ss_pred CCC-CCCHHHHHHHHHHHHhCCCcEEEEeccccccc-CCChhhhHHHHHHhHHhCCcEEEEechhhhhc
Q psy207 39 GGC-DPTEDQWKQLAQLFKERPSLFVFFDSAYQGFA-SGDLERDAFAVRYFAQEGFEFLCSQSFAKNFG 105 (109)
Q Consensus 39 ~~~-~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~-~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~fg 105 (109)
+|+ .++++-|++|.++++++ ++++|+||+..||+ .|. -++...+ ...+.+ -+|+|.+|
T Consensus 232 gG~~~~~~~yl~~lr~lc~~~-g~llI~DEV~tGfGRtG~----~~a~~~~-gv~PDi---v~~gK~l~ 291 (456)
T PRK07480 232 GGVIIPPATYWPEIQRICRKY-DILLVADEVICGFGRTGE----WFGSQHF-GIKPDL---MTIAKGLT 291 (456)
T ss_pred CCCccCCHHHHHHHHHHHHHc-CCEEEEechhhCCCcCcc----hhhhhhc-CCCCCe---eeeehhhc
Confidence 444 57788899999999999 99999999999995 442 2233332 234553 35688765
No 270
>PRK07036 hypothetical protein; Provisional
Probab=91.87 E-value=0.39 Score=39.32 Aligned_cols=55 Identities=20% Similarity=0.373 Sum_probs=39.5
Q ss_pred CCCHHHHHHHHHHHHhCCCcEEEEeccccccc-CCChhhhHHHHH-HhHHhCCcEEEEechhhhhc
Q psy207 42 DPTEDQWKQLAQLFKERPSLFVFFDSAYQGFA-SGDLERDAFAVR-YFAQEGFEFLCSQSFAKNFG 105 (109)
Q Consensus 42 ~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~-~g~~~~d~~~l~-~~~~~~~~~~v~~SfSK~fg 105 (109)
.++++-|+++.++++++ +++.|+||...||+ .|. .++.. .+ ...+.++ +|+|.+|
T Consensus 237 ~p~~~yl~~lr~lc~~~-g~llI~DEV~tGfGRtG~----~~~~~~~~-gv~PDiv---t~gK~l~ 293 (466)
T PRK07036 237 VPPPGYHARMREICRRY-DILYISDEVVTGFGRLGH----FFASEAVF-GIQPDII---TFAKGLT 293 (466)
T ss_pred cCCHHHHHHHHHHHHHc-CCEEEEeechhCCCcCch----hhhhhhhc-CCCCCEE---EEccccc
Confidence 67899999999999999 99999999999994 342 22332 22 2345533 5688765
No 271
>PRK06062 hypothetical protein; Provisional
Probab=91.79 E-value=0.46 Score=38.72 Aligned_cols=55 Identities=22% Similarity=0.401 Sum_probs=40.5
Q ss_pred CCCHHHHHHHHHHHHhCCCcEEEEeccccccc-CCChhhhHHHHHHhHHhCCcEEEEechhhhhc
Q psy207 42 DPTEDQWKQLAQLFKERPSLFVFFDSAYQGFA-SGDLERDAFAVRYFAQEGFEFLCSQSFAKNFG 105 (109)
Q Consensus 42 ~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~-~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~fg 105 (109)
.++++-|++|.++++++ ++++|+||+.-||. .|. .++...+ ...+.++ +|+|.+|
T Consensus 231 ~p~~~yl~~lr~lc~~~-g~lLI~DEV~tGfGRtG~----~~a~~~~-gv~PDi~---t~gK~lg 286 (451)
T PRK06062 231 VPPPGYLAGVRELCDRH-GIVLIADEVMAGFGRTGK----WFAIEHF-GVVPDLI---TFAKGVN 286 (451)
T ss_pred cCCHHHHHHHHHHHHHc-CCEEEeeccccCCCcCcH----HHHHHhc-CCCCCee---eechhhh
Confidence 57899999999999999 99999999999985 331 2233333 2345533 6799876
No 272
>KOG0053|consensus
Probab=91.55 E-value=0.47 Score=38.78 Aligned_cols=61 Identities=23% Similarity=0.264 Sum_probs=41.2
Q ss_pred CCCeeee----ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhhc
Q psy207 30 HPKKVNL----SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNFG 105 (109)
Q Consensus 30 ~~~kv~L----~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~fg 105 (109)
+.+.|.+ ||+....+-+. |+++++++ ++++++|+-.-+...- + ++ +.+.. +|+.|.+|.+|
T Consensus 162 ~t~~V~~ESPsNPll~v~DI~~---l~~la~~~-g~~vvVDnTf~~p~~~----~--pL----~lGAD-IV~hSaTKyi~ 226 (409)
T KOG0053|consen 162 NTKAVFLESPSNPLLKVPDIEK---LARLAHKY-GFLVVVDNTFGSPYNQ----D--PL----PLGAD-IVVHSATKYIG 226 (409)
T ss_pred CceEEEEECCCCCccccccHHH---HHHHHhhC-CCEEEEeCCcCccccc----C--hh----hcCCC-EEEEeeeeeec
Confidence 5678888 67666665554 55555577 9999999887766322 2 33 23333 66999999987
No 273
>PRK06105 aminotransferase; Provisional
Probab=91.36 E-value=0.49 Score=38.64 Aligned_cols=59 Identities=19% Similarity=0.497 Sum_probs=42.0
Q ss_pred cCCC-CCCHHHHHHHHHHHHhCCCcEEEEeccccccc-CCChhhhHHHHHHhHHhCCcEEEEechhhhhc
Q psy207 38 VGGC-DPTEDQWKQLAQLFKERPSLFVFFDSAYQGFA-SGDLERDAFAVRYFAQEGFEFLCSQSFAKNFG 105 (109)
Q Consensus 38 ~~~~-~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~-~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~fg 105 (109)
-+|+ .++++-|+++.++++++ +++.|+||+.-||+ .|. -++...+ ...+.+ -+|||.+|
T Consensus 230 ~gG~~~~~~~yl~~lr~lc~~~-~~llI~DEv~tG~GRtG~----~f~~~~~-~v~PDi---~~~gK~lg 290 (460)
T PRK06105 230 AGGVIVPPKTYWEKIQAVLRKY-DILLVADEVICGFGRTGN----MFGCETF-GIKPDI---LVMSKQLS 290 (460)
T ss_pred CCCCccCCHHHHHHHHHHHHHc-CCeEEEeccccCCCcCch----hhhHHhc-CCCCCe---eeeecccc
Confidence 3344 57889999999999999 99999999999995 452 2233332 233553 36788876
No 274
>PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional
Probab=91.30 E-value=0.6 Score=38.25 Aligned_cols=56 Identities=18% Similarity=0.264 Sum_probs=41.1
Q ss_pred CCCCHHHHHHHHHHHHhCCCcEEEEeccccccc-CCChhhhHHHHHHhHHhCCcEEEEechhhhhc
Q psy207 41 CDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFA-SGDLERDAFAVRYFAQEGFEFLCSQSFAKNFG 105 (109)
Q Consensus 41 ~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~-~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~fg 105 (109)
..++++-|+++.++++++ +++.|+||...||+ .|. .++..++ ...+.++ +++|..|
T Consensus 247 ~~p~~~yl~~lr~lc~~~-giLlI~DEV~tGfGRtG~----~~a~e~~-gv~PDiv---~~gKglg 303 (464)
T PRK06938 247 IPAPIEWLRGLRRITEEA-GIPLIVDEIQSGFGRTGK----MFAFEHA-GIIPDVV---VLSKAIG 303 (464)
T ss_pred cCCCHHHHHHHHHHHHHc-CCEEEEeccccCCCcCcH----HHHHHhc-CCCCCEE---Eeecccc
Confidence 357899999999999999 99999999999995 442 3344333 2456644 4578665
No 275
>PRK07483 hypothetical protein; Provisional
Probab=91.29 E-value=0.45 Score=38.65 Aligned_cols=56 Identities=18% Similarity=0.373 Sum_probs=40.1
Q ss_pred CCCCHHHHHHHHHHHHhCCCcEEEEecccccccC-CChhhhHHHHHHhHHhCCcEEEEechhhhhc
Q psy207 41 CDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFAS-GDLERDAFAVRYFAQEGFEFLCSQSFAKNFG 105 (109)
Q Consensus 41 ~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~-g~~~~d~~~l~~~~~~~~~~~v~~SfSK~fg 105 (109)
..++++-|+++.++++++ +++.|+||...||.. | .-++...+ ...+.++ +|+|.+|
T Consensus 216 ~~~~~~fl~~lr~lc~~~-gillI~DEV~tGfGRtG----~~~a~~~~-gv~PDiv---~~gK~l~ 272 (443)
T PRK07483 216 VPPVPGYFKRIREVCDRY-GVLLILDEVMCGMGRTG----TLFACEED-GVAPDLV---TIAKGLG 272 (443)
T ss_pred EeCCHHHHHHHHHHHHHh-CCEEEEecceeCcccCc----HHHHHhhc-CCCCCee---eehhhhc
Confidence 467899999999999999 999999999999953 3 22333333 2345533 4577654
No 276
>PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional
Probab=91.27 E-value=0.54 Score=37.89 Aligned_cols=56 Identities=16% Similarity=0.214 Sum_probs=39.5
Q ss_pred CCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhhc
Q psy207 41 CDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNFG 105 (109)
Q Consensus 41 ~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~fg 105 (109)
..++++-|++|.++++++ +++.|+||+..||-.+. .++...+ ...+.+ -+|+|.+|
T Consensus 216 ~~p~~~yl~~l~~lc~~~-g~llI~DEV~tG~Rt~~----~~a~~~~-gv~PDi---vt~gK~lg 271 (428)
T PRK12389 216 VEPKPGFLEAVNELAHEA-GALVIYDEVITAFRFMY----GGAQDLL-GVEPDL---TALGKIIG 271 (428)
T ss_pred cCCCHHHHHHHHHHHHHc-CCEEEEEccccccccCc----chhhHHh-CCCCCe---eeechhhc
Confidence 356889999999999999 99999999999994431 1112222 234554 37788876
No 277
>PRK12403 putative aminotransferase; Provisional
Probab=91.26 E-value=0.54 Score=38.42 Aligned_cols=60 Identities=27% Similarity=0.479 Sum_probs=41.5
Q ss_pred ccCCC-CCCHHHHHHHHHHHHhCCCcEEEEecccccccC-CChhhhHHHHHHhHHhCCcEEEEechhhhhc
Q psy207 37 SVGGC-DPTEDQWKQLAQLFKERPSLFVFFDSAYQGFAS-GDLERDAFAVRYFAQEGFEFLCSQSFAKNFG 105 (109)
Q Consensus 37 ~~~~~-~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~-g~~~~d~~~l~~~~~~~~~~~v~~SfSK~fg 105 (109)
+-+|. .++++-|++|.++++++ ++++|+||+-.||+. |. -++...+ ...+.++ +|+|.+|
T Consensus 233 g~gG~~~~~~~yl~~lr~lc~~~-g~lLI~DEV~tGfGRtG~----~~a~e~~-gv~PDiv---~~gK~lg 294 (460)
T PRK12403 233 GAGGMIFPPESYWPEIQRICRQY-DVLLCADEVIGGFGRTGE----WFAHEHF-GFEPDTL---SIAKGLT 294 (460)
T ss_pred CCCCCccCCHHHHHHHHHHHHHc-CCEEEEeccccCCCcCch----hhhhhhc-CCCCCeE---EEccccc
Confidence 33344 56889999999999999 999999999999953 32 1222222 2335655 3888876
No 278
>PRK06149 hypothetical protein; Provisional
Probab=91.11 E-value=0.4 Score=42.71 Aligned_cols=60 Identities=17% Similarity=0.232 Sum_probs=43.2
Q ss_pred cCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccC-CChhhhHHHHHHhHHhCCcEEEEechhhhhc
Q psy207 38 VGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFAS-GDLERDAFAVRYFAQEGFEFLCSQSFAKNFG 105 (109)
Q Consensus 38 ~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~-g~~~~d~~~l~~~~~~~~~~~v~~SfSK~fg 105 (109)
-|...++++-|+++.++++++ +.+.|+||+.-||+. |. --++.+.+ ...+.++ +|+|.+|
T Consensus 757 gG~i~~p~~yL~~l~~lc~~~-g~llI~DEV~tGfGRtG~---~~~a~e~~-gv~PDiv---t~gK~lg 817 (972)
T PRK06149 757 AGGIALPPGYLQQVYAAVRAR-GGVCIADEVQVGYGRLGH---YFWGFEQQ-GVVPDII---TMAKGMG 817 (972)
T ss_pred CCcccCCHHHHHHHHHHHHHc-CCEEEEEeehhcCCccCc---cchhhhhc-CCCCCEE---Eeccccc
Confidence 345578899999999999999 999999999999953 31 12233333 2345644 7799877
No 279
>TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein. This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown.
Probab=91.10 E-value=0.4 Score=36.94 Aligned_cols=38 Identities=21% Similarity=0.371 Sum_probs=29.4
Q ss_pred CCCCeeee----ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccc
Q psy207 29 PHPKKVNL----SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQ 70 (109)
Q Consensus 29 ~~~~kv~L----~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~ 70 (109)
+.++.|.+ ||||...+.+ +|.++++++ ++++++|+|..
T Consensus 136 ~~~~~v~~~~~~n~tG~~~~~~---~i~~l~~~~-~~~livD~a~~ 177 (376)
T TIGR01977 136 TNTKLIVVSHASNVTGTILPIE---EIGELAQEN-GIFFILDAAQT 177 (376)
T ss_pred CCCeEEEEECCCCCccccCCHH---HHHHHHHHc-CCEEEEEhhhc
Confidence 34556666 8999998865 566777788 99999999974
No 280
>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=91.04 E-value=0.87 Score=37.02 Aligned_cols=63 Identities=21% Similarity=0.203 Sum_probs=41.0
Q ss_pred CCCCeeee----ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhh
Q psy207 29 PHPKKVNL----SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNF 104 (109)
Q Consensus 29 ~~~~kv~L----~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~f 104 (109)
++++.|.+ ||+|...+ +++|+++++++ ++++++|.++. .+.... .+ +.+.. +++.|.+|.+
T Consensus 148 ~~TklV~~e~~~np~g~v~D---i~~I~~la~~~-gi~livD~t~a---~~~~~~---pl----~~GaD-~vv~S~tK~l 212 (433)
T PRK08134 148 PNTRLLFGETLGNPGLEVLD---IPTVAAIAHEA-GVPLLVDSTFT---TPYLLR---PF----EHGAD-LVYHSATKFL 212 (433)
T ss_pred CCCeEEEEECCCcccCcccC---HHHHHHHHHHc-CCEEEEECCCc---ccccCC---ch----hcCCC-EEEecccccc
Confidence 45666766 67666665 56777777899 99999999953 231111 11 23333 5688899988
Q ss_pred cc
Q psy207 105 GL 106 (109)
Q Consensus 105 gl 106 (109)
|=
T Consensus 213 ~g 214 (433)
T PRK08134 213 GG 214 (433)
T ss_pred CC
Confidence 74
No 281
>PRK07482 hypothetical protein; Provisional
Probab=90.99 E-value=0.58 Score=38.24 Aligned_cols=59 Identities=20% Similarity=0.468 Sum_probs=41.6
Q ss_pred cCCC-CCCHHHHHHHHHHHHhCCCcEEEEeccccccc-CCChhhhHHHHHHhHHhCCcEEEEechhhhhc
Q psy207 38 VGGC-DPTEDQWKQLAQLFKERPSLFVFFDSAYQGFA-SGDLERDAFAVRYFAQEGFEFLCSQSFAKNFG 105 (109)
Q Consensus 38 ~~~~-~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~-~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~fg 105 (109)
-+|+ .++++-|++|.++++++ +++.|+||...||+ .|. -++.+.+ ...+.+++ ++|.+|
T Consensus 232 ~gG~~~~~~~yl~~lr~lc~~~-giLlI~DEV~tGfGRtG~----~~a~~~~-gv~PDiv~---~gKgl~ 292 (461)
T PRK07482 232 TGGIVPPPAGYWPAIQAVLKKY-DILLIADEVVTGFGRLGS----MFGSDHY-GIEPDLIT---VAKGLT 292 (461)
T ss_pred CCCCcCCCHHHHHHHHHHHHHh-CCEEEEeccccCCCcCcc----hhhHHhc-CCCCCEEE---Eccccc
Confidence 3344 47899999999999999 99999999999995 452 2233333 24456443 577653
No 282
>COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism]
Probab=90.83 E-value=0.62 Score=38.48 Aligned_cols=62 Identities=26% Similarity=0.422 Sum_probs=46.3
Q ss_pred ccCCC-CCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhhcc
Q psy207 37 SVGGC-DPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNFGL 106 (109)
Q Consensus 37 ~~~~~-~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~fgl 106 (109)
+-+|. .++++-++++.++++++ ++++|+||.-.||+.-. .-|+.+++- ..+.+ -+|||.+|=
T Consensus 233 gegG~~v~p~~fl~~l~~~~~~~-gillI~DEVQtG~GRTG---~~fa~E~~g-v~PDi---vt~aK~ig~ 295 (447)
T COG0160 233 GEGGIIVPPKGFLKALRKLCREH-GILLIADEVQTGFGRTG---KMFAFEHFG-VEPDI---VTLAKSLGG 295 (447)
T ss_pred CCCCCcCCCHHHHHHHHHHHHHc-CCEEEEeccccCCCccc---cchhhhhcC-CCCCE---EEecccccC
Confidence 55555 56666679999999999 99999999999998532 356776553 45674 478898875
No 283
>PRK05965 hypothetical protein; Provisional
Probab=90.80 E-value=0.63 Score=37.99 Aligned_cols=60 Identities=22% Similarity=0.344 Sum_probs=41.7
Q ss_pred ccCCC-CCCHHHHHHHHHHHHhCCCcEEEEeccccccc-CCChhhhHHHHHHhHHhCCcEEEEechhhhhc
Q psy207 37 SVGGC-DPTEDQWKQLAQLFKERPSLFVFFDSAYQGFA-SGDLERDAFAVRYFAQEGFEFLCSQSFAKNFG 105 (109)
Q Consensus 37 ~~~~~-~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~-~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~fg 105 (109)
+-+|+ .++++-|+++.++++++ ++++|+||...||+ .|. -++...+ ...+.++ +|+|.+|
T Consensus 226 g~gG~~~p~~~yl~~lr~lc~~~-gillI~DEV~tGfGRtG~----~~a~~~~-gv~PDiv---~~gKgl~ 287 (459)
T PRK05965 226 GSGGVIVPPKGWLKAMREACREL-GILFVADEVITGFGRTGP----LFACEAE-GVVPDLM---TVAKGLT 287 (459)
T ss_pred cCCCCccCCHHHHHHHHHHHHHc-CCEEEEechhccCccCch----hhhHhhc-CCCCCeE---Eechhhc
Confidence 33444 67889999999999999 99999999999995 442 2333333 2345644 4566654
No 284
>PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional
Probab=90.78 E-value=0.68 Score=37.85 Aligned_cols=56 Identities=16% Similarity=0.329 Sum_probs=41.0
Q ss_pred CCCCHHHHHHHHHHHHhCCCcEEEEeccccccc-CCChhhhHHHHHHhHHhCCcEEEEechhhhhc
Q psy207 41 CDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFA-SGDLERDAFAVRYFAQEGFEFLCSQSFAKNFG 105 (109)
Q Consensus 41 ~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~-~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~fg 105 (109)
..++++-|+++-++++++ +++.|+||...||. .|. .++.+.+ ...+.++ +++|.+|
T Consensus 241 ~~~~~~yl~~lr~lc~~~-g~LlI~DEV~tGfGRtG~----~~a~~~~-gv~PDiv---t~gK~l~ 297 (459)
T PRK06931 241 NPAPVEWLQKIREVTQKH-GILLIVDEVQAGFARTGK----MFAFEHA-GIEPDII---VMSKAVG 297 (459)
T ss_pred cCCCHHHHHHHHHHHHHc-CCEEEEecchhcCCcCch----HHHhhhc-CCCCCEE---Eeccccc
Confidence 367899999999999999 99999999999995 452 3344333 2346643 4577765
No 285
>PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional
Probab=90.68 E-value=0.52 Score=37.03 Aligned_cols=40 Identities=20% Similarity=0.253 Sum_probs=29.2
Q ss_pred CCCeeee-ccCCCCCCHHHHHHHHHHHHhCCCcEEEEeccccccc
Q psy207 30 HPKKVNL-SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFA 73 (109)
Q Consensus 30 ~~~kv~L-~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~ 73 (109)
.++.|.+ +++|... ++++|+++++++ ++++|.|.||.-++
T Consensus 119 ~tk~i~~~~~~G~~~---~~~~i~~la~~~-~i~vIeD~a~a~g~ 159 (375)
T PRK11706 119 KTRAIVPVHYAGVAC---EMDTIMALAKKH-NLFVVEDAAQGVMS 159 (375)
T ss_pred CCeEEEEeCCCCCcc---CHHHHHHHHHHc-CCEEEEECcccccc
Confidence 4555554 8888654 456778888889 99999999986554
No 286
>PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=90.51 E-value=0.63 Score=37.97 Aligned_cols=55 Identities=18% Similarity=0.201 Sum_probs=39.8
Q ss_pred CCCHHHHHHHHHHHHhCCCcEEEEeccccccc-CCChhhhHHHHHHhHHhCCcEEEEechhhhhc
Q psy207 42 DPTEDQWKQLAQLFKERPSLFVFFDSAYQGFA-SGDLERDAFAVRYFAQEGFEFLCSQSFAKNFG 105 (109)
Q Consensus 42 ~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~-~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~fg 105 (109)
.++++-|+++.++++++ ++++|+||...||+ .|. -++.+.+ ...+.++ +|+|..|
T Consensus 239 ~~~~~yl~~lr~lc~~~-gillI~DEV~TG~GRtG~----~fa~~~~-gv~PDiv---t~gKgl~ 294 (453)
T PRK06943 239 MHDPSYLRGLRALCDRY-GVHLIADEIAVGCGRTGT----FFACEQA-GVWPDFL---CLSKGIS 294 (453)
T ss_pred cCCHHHHHHHHHHHHHc-CCEEEeechhhCCCCCcc----hhHHHhC-CCCCCeE---eeehhhc
Confidence 67899999999999999 99999999999995 342 2333333 2446644 3477654
No 287
>TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions.
Probab=90.42 E-value=0.21 Score=38.48 Aligned_cols=33 Identities=21% Similarity=0.415 Sum_probs=26.4
Q ss_pred ccCCCCCCHHHHHHHHHHHHhCCCcEEEEeccccccc
Q psy207 37 SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFA 73 (109)
Q Consensus 37 ~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~ 73 (109)
||||...+ +++|.++++++ +.++++|+||.++.
T Consensus 164 ~~tG~~~~---~~~i~~l~~~~-~~~livD~a~~~~~ 196 (373)
T TIGR03812 164 TELGQIDD---IEELSKIALEN-GIYLHVDAAFGGFV 196 (373)
T ss_pred CCCCccCC---HHHHHHHHHHc-CCeEEEEcCchhHH
Confidence 78888754 55677777888 99999999997664
No 288
>PRK13580 serine hydroxymethyltransferase; Provisional
Probab=90.28 E-value=0.39 Score=40.08 Aligned_cols=74 Identities=12% Similarity=0.173 Sum_probs=43.6
Q ss_pred CCCCeeeeccCCCCCCHHHHHHHHHHHHhCCCcEEEEecc-cccccCCChhhhHHHHHHhHHhCCcEEEEechhhhh-cc
Q psy207 29 PHPKKVNLSVGGCDPTEDQWKQLAQLFKERPSLFVFFDSA-YQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNF-GL 106 (109)
Q Consensus 29 ~~~~kv~L~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~A-Y~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~f-gl 106 (109)
..+++|.+.-.......-.+++|.++++++ +.++++|+| ..|+..|+.-... . ....+.. +++.|++|++ |-
T Consensus 218 ~~~plvii~g~S~~~~~~dl~~i~eia~~~-gA~L~VD~AH~~Gligg~~~~~~--~--~~~~~~D-~vtgT~hKaL~GP 291 (493)
T PRK13580 218 EFKPLILVAGYSAYPRRVNFAKLREIADEV-GAVLMVDMAHFAGLVAGKVFTGD--E--DPVPHAD-IVTTTTHKTLRGP 291 (493)
T ss_pred hcCCEEEEeCccccCCCcCHHHHHHHHHHc-CCEEEEECchhhceeccccchhh--c--CCCCCCc-EEEeCChhhccCC
Confidence 345666663222223345688888888899 999999998 5555544321100 0 0001223 6689999988 54
Q ss_pred CC
Q psy207 107 YS 108 (109)
Q Consensus 107 yg 108 (109)
.|
T Consensus 292 ~G 293 (493)
T PRK13580 292 RG 293 (493)
T ss_pred Ce
Confidence 33
No 289
>PRK09221 beta alanine--pyruvate transaminase; Provisional
Probab=90.26 E-value=0.7 Score=37.60 Aligned_cols=58 Identities=26% Similarity=0.516 Sum_probs=40.5
Q ss_pred CCC-CCCHHHHHHHHHHHHhCCCcEEEEecccccccC-CChhhhHHHHHHhHHhCCcEEEEechhhhhc
Q psy207 39 GGC-DPTEDQWKQLAQLFKERPSLFVFFDSAYQGFAS-GDLERDAFAVRYFAQEGFEFLCSQSFAKNFG 105 (109)
Q Consensus 39 ~~~-~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~-g~~~~d~~~l~~~~~~~~~~~v~~SfSK~fg 105 (109)
+|. .++++-|++|.++++++ ++++|+||+..||+. |. .++...+ ...+.+ .+|||.+|
T Consensus 231 ~G~~~~~~~yl~~l~~lc~~~-g~llI~DEV~tG~GRtG~----~~~~~~~-gv~PDi---~~~gK~l~ 290 (445)
T PRK09221 231 AGVLVPPKGYLQRLREICDKH-GILLIFDEVITGFGRLGA----AFAAERF-GVTPDI---ITFAKGLT 290 (445)
T ss_pred CCcccCCHHHHHHHHHHHHHc-CCEEEEeehhhCCCcCch----hhHHHhc-CCCCCE---EEeccccc
Confidence 344 57888899999999999 999999999999853 42 2233322 223443 47788874
No 290
>PRK06917 hypothetical protein; Provisional
Probab=90.17 E-value=0.59 Score=38.03 Aligned_cols=55 Identities=16% Similarity=0.393 Sum_probs=39.9
Q ss_pred CCCHHHHHHHHHHHHhCCCcEEEEeccccccc-CCChhhhHHHHHHhHHhCCcEEEEechhhhhc
Q psy207 42 DPTEDQWKQLAQLFKERPSLFVFFDSAYQGFA-SGDLERDAFAVRYFAQEGFEFLCSQSFAKNFG 105 (109)
Q Consensus 42 ~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~-~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~fg 105 (109)
.++++-|+++.++++++ ++++|+||+..||. .|. .++...+ ...+.+ -+|||.+|
T Consensus 217 ~p~~~fl~~lr~lc~~~-g~llI~DEv~tGfGRtG~----~~a~~~~-gv~PDi---~~~gK~l~ 272 (447)
T PRK06917 217 VPPKGYYKVIKEICDHY-DILFIADEVMTGLGRTGA----MFAMEHW-GVEPDI---MTLGKGLG 272 (447)
T ss_pred cCCHHHHHHHHHHHHHc-CCEEEEechhhCcCcccc----hhhHHhc-CCCCCE---EEeeehhc
Confidence 67899999999999999 99999999999984 342 2222322 234564 35688775
No 291
>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]
Probab=90.13 E-value=0.65 Score=37.92 Aligned_cols=67 Identities=16% Similarity=0.200 Sum_probs=47.7
Q ss_pred CCCCCCeeee----ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhh
Q psy207 27 DDPHPKKVNL----SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAK 102 (109)
Q Consensus 27 ~d~~~~kv~L----~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK 102 (109)
-++++|.|++ ||.+..++-| +|+++++++ ++.+++|.-.. +. +.+|-+ +.+-+ +|.+|.||
T Consensus 144 I~~nTkavf~EtigNP~~~v~Die---~ia~iAh~~-gvpliVDNT~a---tp------yl~rP~-~hGAD-IVvHS~TK 208 (426)
T COG2873 144 IDENTKAVFAETIGNPGLDVLDIE---AIAEIAHRH-GVPLIVDNTFA---TP------YLCRPI-EHGAD-IVVHSATK 208 (426)
T ss_pred hCcccceEEEEeccCCCccccCHH---HHHHHHHHc-CCcEEEecCCC---cc------eecchh-hcCCC-EEEEeecc
Confidence 3667888988 9998887765 677888899 99999996432 21 233433 35555 55899999
Q ss_pred hhccCC
Q psy207 103 NFGLYS 108 (109)
Q Consensus 103 ~fglyg 108 (109)
..|=.|
T Consensus 209 ~igGhG 214 (426)
T COG2873 209 YIGGHG 214 (426)
T ss_pred cccCCc
Confidence 987544
No 292
>COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]
Probab=89.59 E-value=1.6 Score=35.72 Aligned_cols=68 Identities=21% Similarity=0.337 Sum_probs=46.1
Q ss_pred CCCeeee----ccCCC-CCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhh
Q psy207 30 HPKKVNL----SVGGC-DPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNF 104 (109)
Q Consensus 30 ~~~kv~L----~~~~~-~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~f 104 (109)
++-.|.| +-+|. ..+++-|+++-++|+++ +++.|+||.-.|++.-. ..|+..++ ...+.+ -++.|..
T Consensus 184 ~taAvivEPIQGEgGV~~~~~~fl~~lr~lCd~~-g~LLI~DEVQtG~GRTG---k~fA~e~~-gV~PDI---~tlaK~L 255 (404)
T COG4992 184 DTAAVIVEPIQGEGGVIPAPPEFLKALRELCDEH-GALLILDEVQTGLGRTG---KLFAYEHY-GVEPDI---LTLAKAL 255 (404)
T ss_pred CeEEEEEecccCCCCCCCCCHHHHHHHHHHHHHh-CeEEEEeccccCCCccc---hHHHHHHh-CCCCCE---EEeeccc
Confidence 5556666 44444 66778889999999999 99999999999997421 34455444 244553 3445554
Q ss_pred c
Q psy207 105 G 105 (109)
Q Consensus 105 g 105 (109)
|
T Consensus 256 g 256 (404)
T COG4992 256 G 256 (404)
T ss_pred c
Confidence 3
No 293
>PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=89.16 E-value=1 Score=36.84 Aligned_cols=55 Identities=18% Similarity=0.248 Sum_probs=40.0
Q ss_pred CCCHHHHHHHHHHHHhCCCcEEEEecccccccC-CChhhhHHHHHHhHHhCCcEEEEechhhhhc
Q psy207 42 DPTEDQWKQLAQLFKERPSLFVFFDSAYQGFAS-GDLERDAFAVRYFAQEGFEFLCSQSFAKNFG 105 (109)
Q Consensus 42 ~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~-g~~~~d~~~l~~~~~~~~~~~v~~SfSK~fg 105 (109)
.++++-|+++.++++++ +++.|+||+..||.. |. .++...+ ...+.++ +|+|.+|
T Consensus 241 ~~~~~fl~~lr~lc~~~-g~llI~DEV~TG~GRtG~----~~a~~~~-gv~PDiv---~~gK~l~ 296 (460)
T PRK06916 241 TMPKGYLKGLRNLCTKY-NVLFITDEVATGFGRTGK----MFACEHE-NVTPDIM---TAGKGLT 296 (460)
T ss_pred cCCHHHHHHHHHHHHHc-CCEEEeechhhCCCcCch----hhHHHhc-CCCCCee---eeehhhh
Confidence 57999999999999999 999999999999943 32 2333333 2345644 4688765
No 294
>TIGR00699 GABAtrns_euk 4-aminobutyrate aminotransferase, eukaryotic type. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.
Probab=89.02 E-value=1.3 Score=36.47 Aligned_cols=62 Identities=19% Similarity=0.368 Sum_probs=42.4
Q ss_pred ccCCC-CCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhH-HhCCcEEEEechhhhhc
Q psy207 37 SVGGC-DPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFA-QEGFEFLCSQSFAKNFG 105 (109)
Q Consensus 37 ~~~~~-~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~-~~~~~~~v~~SfSK~fg 105 (109)
+-+|. .++++-|+++.++++++ ++++|+||+..||.... ..++...+- ...+.+ -+|||.+|
T Consensus 262 g~~G~~~~~~~yl~~lr~lc~~~-g~lLI~DEV~tGfGrtG---~~fa~e~~gv~~~PDi---~t~gK~lg 325 (464)
T TIGR00699 262 SEGGDNHASPDFFRKLRDITKKH-NVAFIVDEVQTGVGATG---KFWAHEHWNLDDPPDM---VTFSKKFQ 325 (464)
T ss_pred CCCCCcCCCHHHHHHHHHHHHHc-CCEEEEeeeeeCCCCCc---chhHHHhcCCCCCCCE---EEehhhhc
Confidence 33444 45899999999999999 99999999999996521 122333321 112554 56789885
No 295
>PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates []. One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D.
Probab=88.69 E-value=0.13 Score=42.05 Aligned_cols=83 Identities=23% Similarity=0.251 Sum_probs=48.0
Q ss_pred chhhhhcCCCCCCe---eee-ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccc---cccCCChhhhHHHHHHhHHhCC
Q psy207 20 AVNKAYLDDPHPKK---VNL-SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQ---GFASGDLERDAFAVRYFAQEGF 92 (109)
Q Consensus 20 ~l~~~~~~d~~~~k---v~L-~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~---gf~~g~~~~d~~~l~~~~~~~~ 92 (109)
.+.++..+.+..+. |.| +||=.-+. .++++|++++.++ ++.++||||+- +|. ++.+++..+..=...+.
T Consensus 155 ~i~~~l~~~p~~k~~~~vvlt~PTY~Gv~-~di~~I~~~~h~~-~~~llvDEAhGah~~F~--~lp~~a~~~gad~~~~~ 230 (417)
T PF01276_consen 155 DIEEALKEHPDAKAPRLVVLTSPTYYGVC-YDIKEIAEICHKH-GIPLLVDEAHGAHFGFH--PLPRSALALGADRPNDP 230 (417)
T ss_dssp HHHHHHHHCTTCHCESEEEEESS-TTSEE-E-HHHHHHHHCCT-ECEEEEE-TT-TTGGCS--GGGTTCSSTTSS-CTSB
T ss_pred HHHHHHHhCccccCceEEEEeCCCCCeEE-ECHHHHHHHhccc-CCEEEEEccccccccCC--CCccchhhccCcccccc
Confidence 34455555555444 666 77755433 3467788888888 99999999954 444 34333221110012456
Q ss_pred cEEEEechhhhhcc
Q psy207 93 EFLCSQSFAKNFGL 106 (109)
Q Consensus 93 ~~~v~~SfSK~fgl 106 (109)
.++|+||.=|+.+-
T Consensus 231 ~~~vvqS~HKtL~a 244 (417)
T PF01276_consen 231 GIIVVQSTHKTLPA 244 (417)
T ss_dssp EEEEEEEHHHHSSS
T ss_pred ceeeeechhhcccc
Confidence 78999999998764
No 296
>cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn). AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein
Probab=88.68 E-value=0.94 Score=34.43 Aligned_cols=38 Identities=21% Similarity=0.216 Sum_probs=28.2
Q ss_pred CCCCeeee-ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccc
Q psy207 29 PHPKKVNL-SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQ 70 (109)
Q Consensus 29 ~~~~kv~L-~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~ 70 (109)
+.++.|.+ +++|...+ +++|.++++++ ++++++|.++.
T Consensus 105 ~~~~~v~~~~~~G~~~~---~~~i~~l~~~~-~i~li~D~a~~ 143 (352)
T cd00616 105 PRTKAIIPVHLYGNPAD---MDAIMAIAKRH-GLPVIEDAAQA 143 (352)
T ss_pred cCCeEEEEECCCCCcCC---HHHHHHHHHHc-CCeEEEECCCC
Confidence 34555555 88887654 66777778888 99999999875
No 297
>PRK08742 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=88.41 E-value=1.1 Score=36.80 Aligned_cols=55 Identities=18% Similarity=0.248 Sum_probs=40.1
Q ss_pred CCCHHHHHHHHHHHHhCCCcEEEEecccccccC-CChhhhHHHHHHhHHhCCcEEEEechhhhhc
Q psy207 42 DPTEDQWKQLAQLFKERPSLFVFFDSAYQGFAS-GDLERDAFAVRYFAQEGFEFLCSQSFAKNFG 105 (109)
Q Consensus 42 ~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~-g~~~~d~~~l~~~~~~~~~~~v~~SfSK~fg 105 (109)
.++++-|+++.++++++ ++++|+||..-||.. |. -++...+ ...+.++ +|+|.+|
T Consensus 254 ~~p~~fl~~lr~lc~~~-gillI~DEV~TGfGRtG~----~~a~e~~-gv~PDiv---~~gKgl~ 309 (472)
T PRK08742 254 MHHPAYLRRARELCDAH-GAFLIADEIATGFGRTGT----LFACEQA-GVMPDLL---CLSKGLT 309 (472)
T ss_pred cCCHHHHHHHHHHHHHc-CCEEEEechhhCCCCCcc----chHHHhc-CCCCCEE---EEccccc
Confidence 67899999999999999 999999999999963 52 2333333 2446644 3477654
No 298
>PRK07481 hypothetical protein; Provisional
Probab=87.96 E-value=1.3 Score=36.05 Aligned_cols=34 Identities=21% Similarity=0.576 Sum_probs=30.1
Q ss_pred CCC-CCCHHHHHHHHHHHHhCCCcEEEEeccccccc
Q psy207 39 GGC-DPTEDQWKQLAQLFKERPSLFVFFDSAYQGFA 73 (109)
Q Consensus 39 ~~~-~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~ 73 (109)
+|+ .++++-|+++.++++++ ++++|+||...||.
T Consensus 226 gG~~~~~~~fl~~lr~lc~~~-g~llI~DEV~tGfG 260 (449)
T PRK07481 226 GGVIVPPANFWPLVREVCDRH-GILLIADEVVTGFG 260 (449)
T ss_pred cCCccCCHHHHHHHHHHHHHc-CCEEEEeehhhCcC
Confidence 344 57888899999999999 99999999999995
No 299
>TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase. This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041).
Probab=87.41 E-value=1.6 Score=34.60 Aligned_cols=39 Identities=21% Similarity=0.221 Sum_probs=28.0
Q ss_pred CCCeeee-ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccc
Q psy207 30 HPKKVNL-SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGF 72 (109)
Q Consensus 30 ~~~kv~L-~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf 72 (109)
.++.|.+ +|+|...+ +++|+++++++ ++++|.|.||.-.
T Consensus 119 ~tk~Iip~~~~G~~~d---~~~I~~la~~~-~i~vIeDaa~~~g 158 (376)
T TIGR02379 119 RTKAIVPVHYAGVACD---MDTIMALANKH-QLFVIEDAAQGVM 158 (376)
T ss_pred CceEEEEeCCCCCccC---HHHHHHHHHHC-CCEEEEECccccC
Confidence 4455544 88887665 55777778899 9999999886543
No 300
>PRK08114 cystathionine beta-lyase; Provisional
Probab=87.30 E-value=1.7 Score=35.17 Aligned_cols=68 Identities=21% Similarity=0.252 Sum_probs=42.3
Q ss_pred CCCCeeee-ccCCCCCCHHHHHHHHHHHHhC-CCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhhcc
Q psy207 29 PHPKKVNL-SVGGCDPTEDQWKQLAQLFKER-PSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNFGL 106 (109)
Q Consensus 29 ~~~~kv~L-~~~~~~lt~eqw~~i~~~~~~~-p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~fgl 106 (109)
++++.|.+ .|+...+..-++++|+++++++ |++++++|..+.- +-. .+ .+ +.+.. +|++|.+|.++-
T Consensus 146 ~~TrlV~~EtpsNp~~~v~DI~~Ia~ia~~~g~g~~lvVDnT~a~---p~~-~~--pl----~~GaD-ivv~S~tKyl~G 214 (395)
T PRK08114 146 PNTKVVFLESPGSITMEVHDVPAIVAAVRSVNPDAVIMIDNTWAA---GVL-FK--AL----DFGID-ISIQAGTKYLVG 214 (395)
T ss_pred CCceEEEEECCCCCCCEeecHHHHHHHHHHhCCCCEEEEECCCcc---ccc-cC--HH----HcCCc-EEEEcCcccccC
Confidence 35677777 4444444445577788888887 3599999988742 211 11 22 23444 568999998764
Q ss_pred C
Q psy207 107 Y 107 (109)
Q Consensus 107 y 107 (109)
-
T Consensus 215 h 215 (395)
T PRK08114 215 H 215 (395)
T ss_pred C
Confidence 3
No 301
>PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=87.23 E-value=1.4 Score=36.16 Aligned_cols=55 Identities=20% Similarity=0.222 Sum_probs=39.8
Q ss_pred CCCHHHHHHHHHHHHhCCCcEEEEeccccccc-CCChhhhHHHHHHhHHhCCcEEEEechhhhhc
Q psy207 42 DPTEDQWKQLAQLFKERPSLFVFFDSAYQGFA-SGDLERDAFAVRYFAQEGFEFLCSQSFAKNFG 105 (109)
Q Consensus 42 ~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~-~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~fg 105 (109)
.++++-|+++.++++++ +++.|+||...||. .|. .++..++ ...+.++ +|+|.+|
T Consensus 232 ~~~~~yl~~lr~lc~~~-g~llI~DEV~TGfGRtG~----~~a~~~~-gv~PDiv---~~gKgl~ 287 (466)
T PRK07030 232 MYHPVYLKLLREACDRY-GVHLIHDEIAVGFGRTGT----MFACEQA-GIRPDFL---CLSKALT 287 (466)
T ss_pred cCCHHHHHHHHHHHHHc-CCEEEEeehhhCcCcccc----chHHHhc-CCCCCEE---eeehhcc
Confidence 67889999999999999 99999999999996 452 2333333 3445644 3477654
No 302
>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=86.99 E-value=1.9 Score=35.16 Aligned_cols=62 Identities=11% Similarity=0.065 Sum_probs=39.2
Q ss_pred CCCeeee----ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhhc
Q psy207 30 HPKKVNL----SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNFG 105 (109)
Q Consensus 30 ~~~kv~L----~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~fg 105 (109)
+++.|.+ ||++. ..++++|+++++++ ++++++|.+... |... + .+ +.+.. +++.|+.|.+|
T Consensus 155 ~tk~V~~e~~~Np~~~---v~di~~I~~la~~~-gi~livD~t~a~---g~~~-~--p~----~~GaD-ivv~S~~K~l~ 219 (437)
T PRK05613 155 NTKAFFGETFANPQAD---VLDIPAVAEVAHRN-QVPLIVDNTIAT---AALV-R--PL----ELGAD-VVVASLTKFYT 219 (437)
T ss_pred cCeEEEEECCCCCCCc---ccCHHHHHHHHHHc-CCeEEEECCCcc---cccc-C--hH----HhCCC-EEEeeccceec
Confidence 4555555 66554 44467778888899 999999999522 2111 1 22 23444 56889999887
Q ss_pred c
Q psy207 106 L 106 (109)
Q Consensus 106 l 106 (109)
=
T Consensus 220 G 220 (437)
T PRK05613 220 G 220 (437)
T ss_pred C
Confidence 4
No 303
>PRK15029 arginine decarboxylase; Provisional
Probab=86.78 E-value=0.84 Score=39.98 Aligned_cols=69 Identities=19% Similarity=0.169 Sum_probs=42.7
Q ss_pred eeee-ccCCCCCCHHHHHHHHHHHHhCCCcEEEEeccccc---ccCCChhhhHHHHHH-hHH-hCCcEEEEechhhhhc
Q psy207 33 KVNL-SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQG---FASGDLERDAFAVRY-FAQ-EGFEFLCSQSFAKNFG 105 (109)
Q Consensus 33 kv~L-~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~g---f~~g~~~~d~~~l~~-~~~-~~~~~~v~~SfSK~fg 105 (109)
.|.| +||=.-... +.++|++++.++ ++.++||||+-+ |... +.. ..++.. -.+ .+...+|+||.=|+.+
T Consensus 315 avvlt~PTY~Gv~~-di~~I~~~~h~~-~~~llvDEAhGah~~F~~~-~p~-~sa~~~~~~~~~Gad~~vvqStHKtL~ 389 (755)
T PRK15029 315 YCVVTNCTYDGVCY-NAKEAQDLLEKT-SDRLHFDEAWYGYARFNPI-YAD-HYAMRGEPGDHNGPTVFATHSTHKLLN 389 (755)
T ss_pred EEEEECCCCcceee-CHHHHHHHHHhc-CCeEEEECccccccccCcc-ccc-cccccccccccCCCceEEEEchhhccc
Confidence 5666 777554443 457788888899 999999999644 3322 221 112210 001 4556799999988765
No 304
>COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance [Inorganic ion transport and metabolism]
Probab=86.53 E-value=0.71 Score=37.04 Aligned_cols=67 Identities=24% Similarity=0.416 Sum_probs=45.2
Q ss_pred CCCCeeee-ccCCC----CCCHHHHHHHHHHHHh-CCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhh
Q psy207 29 PHPKKVNL-SVGGC----DPTEDQWKQLAQLFKE-RPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAK 102 (109)
Q Consensus 29 ~~~~kv~L-~~~~~----~lt~eqw~~i~~~~~~-~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK 102 (109)
+++|.|-+ -..|+ .++-++++++++++|+ +|++++++|.-|-.|... .|.. +.+..+ ++.|+=|
T Consensus 164 ~~tkli~IQRS~GY~~RpS~~I~eI~~~i~~vk~inpn~ivFVDNCYGEFvE~-~EPt--------~vGaDl-iAGSLIK 233 (416)
T COG4100 164 DRTKLIGIQRSKGYAWRPSLSIAEIEEMITFVKEINPNVIVFVDNCYGEFVEE-KEPT--------HVGADL-IAGSLIK 233 (416)
T ss_pred ccceEEEEEeccCcCCCCcccHHHHHHHHHHHHhcCCCEEEEEeccchhhhhc-cCcc--------ccchhh-hccceee
Confidence 34444444 44555 6788999999999997 688999999999999854 2222 123332 2667777
Q ss_pred hhc
Q psy207 103 NFG 105 (109)
Q Consensus 103 ~fg 105 (109)
|=|
T Consensus 234 NpG 236 (416)
T COG4100 234 NPG 236 (416)
T ss_pred CCC
Confidence 654
No 305
>PRK04366 glycine dehydrogenase subunit 2; Validated
Probab=86.31 E-value=1.2 Score=36.48 Aligned_cols=38 Identities=18% Similarity=0.281 Sum_probs=29.6
Q ss_pred CCCCeeee---ccCCCCCCHHHHHHHHHHHHhCCCcEEEEeccc
Q psy207 29 PHPKKVNL---SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAY 69 (109)
Q Consensus 29 ~~~~kv~L---~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY 69 (109)
+.++.|.+ ||+|. + .+++++|+++++++ +.++++|.|+
T Consensus 207 ~~t~~V~v~~Pn~tG~-~-~~dl~eI~~~a~~~-gal~iVD~a~ 247 (481)
T PRK04366 207 EDTAALMLTNPNTLGL-F-ERNILEIAEIVHEA-GGLLYYDGAN 247 (481)
T ss_pred cCCeEEEEeCCCCccc-c-chHHHHHHHHHHHc-CCEEEEEecC
Confidence 34556666 66774 3 45799999999999 9999999997
No 306
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=86.30 E-value=4.5 Score=28.83 Aligned_cols=60 Identities=18% Similarity=0.264 Sum_probs=43.9
Q ss_pred CCCCHHHHHHHHHHHHhCCCc--EEEEecccccccCCChh----------hhH--HHHHHhHHhCCcEEEEechh
Q psy207 41 CDPTEDQWKQLAQLFKERPSL--FVFFDSAYQGFASGDLE----------RDA--FAVRYFAQEGFEFLCSQSFA 101 (109)
Q Consensus 41 ~~lt~eqw~~i~~~~~~~p~~--~~~~D~AY~gf~~g~~~----------~d~--~~l~~~~~~~~~~~v~~SfS 101 (109)
.+++++||++..+.+++- |+ +|+-..+|.+.+.+.-+ .|. ..++.+.+.+..+++.--++
T Consensus 15 ~~~~~~~W~~~~~~m~~~-GidtlIlq~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~~~ 88 (166)
T PF14488_consen 15 QNWTPAQWREEFRAMKAI-GIDTLILQWTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFVGLYFD 88 (166)
T ss_pred cCCCHHHHHHHHHHHHHc-CCcEEEEEEeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEEeCCCC
Confidence 478999999999999998 76 88889999998865211 121 23444456788988876665
No 307
>PLN02651 cysteine desulfurase
Probab=86.03 E-value=1.2 Score=34.57 Aligned_cols=38 Identities=18% Similarity=0.303 Sum_probs=29.1
Q ss_pred CCCCeeee----ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccc
Q psy207 29 PHPKKVNL----SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQ 70 (109)
Q Consensus 29 ~~~~kv~L----~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~ 70 (109)
++++.|.+ |+||...+ +++|.++++++ ++++++|.+..
T Consensus 137 ~~t~lv~v~~~~n~tG~~~~---l~~I~~~~~~~-g~~~~vD~a~~ 178 (364)
T PLN02651 137 PDTALVSVMAVNNEIGVIQP---VEEIGELCREK-KVLFHTDAAQA 178 (364)
T ss_pred CCcEEEEEECCCCCceeccc---HHHHHHHHHHc-CCEEEEEcchh
Confidence 34555665 88998766 56788888899 99999997754
No 308
>TIGR00474 selA seryl-tRNA(sec) selenium transferase. In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on.
Probab=85.94 E-value=1.7 Score=35.80 Aligned_cols=56 Identities=29% Similarity=0.273 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHhCCCcEEEEecccccccCCChh-----hhHHHHHHhHHhCCcEEEEechhhhhc
Q psy207 45 EDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLE-----RDAFAVRYFAQEGFEFLCSQSFAKNFG 105 (109)
Q Consensus 45 ~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~-----~d~~~l~~~~~~~~~~~v~~SfSK~fg 105 (109)
.-.+++|+++++++ ++++++|.+ .|.. ++.. ... .+....+.+.. +|+.|..|.+|
T Consensus 231 ~~dl~~I~~la~~~-g~~vivD~~-sG~l-~~~~~~gl~~~p-~~~~~~~~GaD-iv~fSg~K~Lg 291 (454)
T TIGR00474 231 EVSIAELVALGREH-GLPVMEDLG-SGSL-VDLSRYGLPDEP-TVQEVIAAGVD-LVTFSGDKLLG 291 (454)
T ss_pred CCCHHHHHHHHHHc-CCeEEEECC-Cccc-ccchhccCCCCc-ccccHhHcCCC-EEEecCccccC
Confidence 34577888889999 999999964 2211 1100 000 01112234555 67899999986
No 309
>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]
Probab=84.67 E-value=1.7 Score=35.12 Aligned_cols=69 Identities=32% Similarity=0.361 Sum_probs=44.4
Q ss_pred cCCCCCCeeee----ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechh
Q psy207 26 LDDPHPKKVNL----SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFA 101 (109)
Q Consensus 26 ~~d~~~~kv~L----~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfS 101 (109)
..++.++.|.+ |.||+... +++|+++++++ +.++++|-| |......+ |. .+.+..++ +.|.=
T Consensus 158 ~i~~~Tklvais~vSn~tG~~~p---v~~I~~la~~~-ga~v~VDaa-q~~~h~~i--dv------~~l~~Df~-afsgH 223 (405)
T COG0520 158 LITPKTKLVALSHVSNVTGTVNP---VKEIAELAHEH-GALVLVDAA-QAAGHLPI--DV------QELGCDFL-AFSGH 223 (405)
T ss_pred hcCCCceEEEEECccccccccch---HHHHHHHHHHc-CCEEEEECc-cccCccCC--Cc------hhcCCCEE-EEccc
Confidence 34556778887 99998765 77889999999 999999955 54443322 21 12334444 55556
Q ss_pred h-hhccCC
Q psy207 102 K-NFGLYS 108 (109)
Q Consensus 102 K-~fglyg 108 (109)
| -+|=+|
T Consensus 224 Kwl~gP~G 231 (405)
T COG0520 224 KWLLGPTG 231 (405)
T ss_pred ccccCCCc
Confidence 6 555544
No 310
>PRK04311 selenocysteine synthase; Provisional
Probab=84.54 E-value=2.5 Score=34.87 Aligned_cols=55 Identities=33% Similarity=0.318 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHhCCCcEEEEeccccccc-----CC-ChhhhHHHHHHhHHhCCcEEEEechhhhhc
Q psy207 45 EDQWKQLAQLFKERPSLFVFFDSAYQGFA-----SG-DLERDAFAVRYFAQEGFEFLCSQSFAKNFG 105 (109)
Q Consensus 45 ~eqw~~i~~~~~~~p~~~~~~D~AY~gf~-----~g-~~~~d~~~l~~~~~~~~~~~v~~SfSK~fg 105 (109)
.-++++|+++++++ ++++++|.+ +|.. .| ..+.+ +....+.+.. +|+.|..|.+|
T Consensus 236 ~~dl~eI~~lak~~-gi~vivD~g-sG~l~~~~~~gl~~~p~---~~~~l~~GaD-iv~fSg~K~Lg 296 (464)
T PRK04311 236 EVSLAELAALGKEH-GLPVVYDLG-SGSLVDLSQYGLPDEPT---VQELLAAGVD-LVTFSGDKLLG 296 (464)
T ss_pred cCCHHHHHHHHHHc-CCeEEEECC-CcccccchhccCCCCCc---hhhHHhcCCc-EEEecCccccc
Confidence 34688899999999 999999995 2221 11 00111 1112234555 66899999886
No 311
>PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase
Probab=84.31 E-value=2.3 Score=37.56 Aligned_cols=34 Identities=26% Similarity=0.387 Sum_probs=30.5
Q ss_pred CCC-CCCHHHHHHHHHHHHhCCCcEEEEeccccccc
Q psy207 39 GGC-DPTEDQWKQLAQLFKERPSLFVFFDSAYQGFA 73 (109)
Q Consensus 39 ~~~-~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~ 73 (109)
+|+ .++++-|+++.++++++ ++++|+||...||.
T Consensus 598 GGmi~~~~~yl~~lr~lc~~~-gilLI~DEV~TGfG 632 (817)
T PLN02974 598 GGMLLIDPLFQRALVQVCRSR-KIPVIFDEVFTGLW 632 (817)
T ss_pred CCcccCCHHHHHHHHHHHHHh-CCEEEEeecccCCC
Confidence 355 46899999999999999 99999999999995
No 312
>TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase. This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species.
Probab=83.37 E-value=1.5 Score=34.31 Aligned_cols=38 Identities=21% Similarity=0.221 Sum_probs=27.8
Q ss_pred CCCeeee-ccCCCCCCHHHHHHHHHHHHhCCCcEEEEeccccc
Q psy207 30 HPKKVNL-SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQG 71 (109)
Q Consensus 30 ~~~kv~L-~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~g 71 (109)
.++.|.+ +++|... ++++|+++++++ ++++|.|.++.-
T Consensus 121 ~t~~v~~~~~~G~~~---~~~~i~~l~~~~-~~~lI~D~a~a~ 159 (380)
T TIGR03588 121 LPKAIVPVDFAGKSV---DMQAIAALAKKH-GLKIIEDASHAL 159 (380)
T ss_pred CceEEEEeCCCCccC---CHHHHHHHHHHc-CCEEEEECCCcc
Confidence 3444443 8888554 477888888899 999999998764
No 313
>PRK13034 serine hydroxymethyltransferase; Reviewed
Probab=83.20 E-value=3.5 Score=33.10 Aligned_cols=64 Identities=16% Similarity=0.272 Sum_probs=36.5
Q ss_pred CCCeeeeccCCCCCCHHHHHHHHHHHHhCCCcEEEEeccc-cccc-CCChhhhHHHHHHhHHhCCcEEEEechhhhh
Q psy207 30 HPKKVNLSVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAY-QGFA-SGDLERDAFAVRYFAQEGFEFLCSQSFAKNF 104 (109)
Q Consensus 30 ~~~kv~L~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY-~gf~-~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~f 104 (109)
.++.|.+.-+. ..-.-+|++|.++++++ ++++++|.|- .|.. .|... . ....--+++.|++|++
T Consensus 168 ~~klVi~~~~~-~g~~~dl~~l~~la~~~-g~~livD~Aha~G~~~~g~~~------~---~~~~~Di~~~s~~K~l 233 (416)
T PRK13034 168 KPKLIIAGFSA-YPRELDFARFREIADEV-GALLMVDMAHIAGLVAAGEHP------N---PFPHAHVVTTTTHKTL 233 (416)
T ss_pred CCeEEEECCCc-cccccCHHHHHHHHHHc-CCEEEEeCcccccCcccCCCC------C---CCCCceEEEEeCcccC
Confidence 34555552221 22334777888889899 9999999982 1111 12100 0 0111236789999999
No 314
>PRK13237 tyrosine phenol-lyase; Provisional
Probab=83.11 E-value=3.4 Score=34.36 Aligned_cols=68 Identities=18% Similarity=0.218 Sum_probs=43.0
Q ss_pred ccC-CCCCCHHHHHHHHHHHHhCCCcEEEEecc-ccc---cc----CCChhhhHH-HHHHhHHhCCcEEEEechhhhhcc
Q psy207 37 SVG-GCDPTEDQWKQLAQLFKERPSLFVFFDSA-YQG---FA----SGDLERDAF-AVRYFAQEGFEFLCSQSFAKNFGL 106 (109)
Q Consensus 37 ~~~-~~~lt~eqw~~i~~~~~~~p~~~~~~D~A-Y~g---f~----~g~~~~d~~-~l~~~~~~~~~~~v~~SfSK~fgl 106 (109)
|.. |...+.++|++|.++++++ ++.++.|-| ..| |. .|-.+++.+ .++.+.+.+ =.++.|++|+++.
T Consensus 188 n~~GGqpvs~~~m~~I~elA~~~-Gl~Vi~DaAra~gna~fI~~re~~y~~~~i~ei~~e~~s~a--D~~t~S~~K~~~~ 264 (460)
T PRK13237 188 NLAGGQPVSMANMRAVRELCDKH-GIKVFFDATRCVENAYFIKEREEGYQDKSIKEIVHEMFSYA--DGCTMSGKKDCLV 264 (460)
T ss_pred ccCCCeeCCHHhHHHHHHHHHHc-CCEEEEECcchhcChhhhcccccccCCCcHhHHhhhccCcC--cEEEEeCCCCCCC
Confidence 554 6788899999999999999 999999987 333 22 111011221 233332222 3457789999875
Q ss_pred C
Q psy207 107 Y 107 (109)
Q Consensus 107 y 107 (109)
-
T Consensus 265 ~ 265 (460)
T PRK13237 265 N 265 (460)
T ss_pred C
Confidence 3
No 315
>PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional
Probab=82.05 E-value=2.6 Score=34.23 Aligned_cols=38 Identities=13% Similarity=0.219 Sum_probs=29.1
Q ss_pred CCCCeeee-ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccc
Q psy207 29 PHPKKVNL-SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQ 70 (109)
Q Consensus 29 ~~~~kv~L-~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~ 70 (109)
+.++.|.+ ++.|. +.++++|.++++++ ++++|.|.++.
T Consensus 158 ~~tkaVi~~~~~G~---p~dl~~I~~la~~~-gi~vIeDaa~a 196 (438)
T PRK15407 158 PKTKAIMIAHTLGN---PFDLAAVKAFCDKH-NLWLIEDNCDA 196 (438)
T ss_pred cCCeEEEEeCCCCC---hhhHHHHHHHHHHC-CCEEEEECccc
Confidence 45566666 56664 46788899999999 99999998874
No 316
>TIGR00519 asnASE_I L-asparaginases, type I. Two related families of asparaginase are designated type I and type II according to the terminology in E. coli, which has both: L-asparaginase I is a low-affinity enzyme found in the cytoplasm, while L-asparaginase II is a high-affinity secreted enzyme synthesized with a cleavable signal sequence. This model describes L-asparaginases related to type I of E. coli. Archaeal putative asparaginases are of this type but contain an extra ~ 80 residues in a conserved N-terminal region. These archaeal homologs are included in this model.
Probab=81.66 E-value=2.8 Score=33.15 Aligned_cols=57 Identities=16% Similarity=0.327 Sum_probs=41.9
Q ss_pred ccCCCCCCHHHHHHHHHHHHhCCCcEEEEeccccccc----CCChhhhHHHHHHhHHhCCcEEEEech
Q psy207 37 SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFA----SGDLERDAFAVRYFAQEGFEFLCSQSF 100 (109)
Q Consensus 37 ~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~----~g~~~~d~~~l~~~~~~~~~~~v~~Sf 100 (109)
+....++|+++|.+|++.++++ - + .|.||. ++.+++.+.++..+.+....+++.-|+
T Consensus 53 ~idSs~~tp~~w~~la~~I~~~-~-----~-~~dG~VVtHGTDTme~TA~~Ls~~l~~~kPVVlTGsm 113 (336)
T TIGR00519 53 NILSENMKPEYWVEIAEAVKKE-Y-----D-DYDGFVITHGTDTMAYTAAALSFMLETPKPVVFTGAQ 113 (336)
T ss_pred CCCcccCCHHHHHHHHHHHHHH-H-----h-cCCeEEEccCCchHHHHHHHHHHHcCCCCCEEEECCC
Confidence 7788999999999999999775 1 1 166664 346788888887765556677776653
No 317
>smart00870 Asparaginase Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma PUBMED:3026924. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma PUBMED:2407723, PUBMED:3379033 - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die.
Probab=81.31 E-value=4.4 Score=31.74 Aligned_cols=58 Identities=19% Similarity=0.371 Sum_probs=40.6
Q ss_pred ccCCCCCCHHHHHHHHHHHHhCCCcEEEEeccccccc----CCChhhhHHHHHHhHHh-CCcEEEEec
Q psy207 37 SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFA----SGDLERDAFAVRYFAQE-GFEFLCSQS 99 (109)
Q Consensus 37 ~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~----~g~~~~d~~~l~~~~~~-~~~~~v~~S 99 (109)
+....++++++|.+|++.+++. +-++.|.||. ++.+++.++++....+. ...+++.-|
T Consensus 51 ~idSs~~t~~~w~~la~~i~~~-----~~~~~~dG~VVtHGTDTmeeTA~~Ls~~l~~l~kPVVlTGa 113 (323)
T smart00870 51 NIDSSNMTPADWLKLAKRINEA-----LADDGYDGVVVTHGTDTLEETAYFLSLTLDSLDKPVVLTGA 113 (323)
T ss_pred CCCcccCCHHHHHHHHHHHHHH-----hccCCCCEEEEecCCccHHHHHHHHHHHhhcCCCCEEEECC
Confidence 7788999999999999999762 1123344443 34678888888765544 567777654
No 318
>COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism]
Probab=80.15 E-value=2.6 Score=33.83 Aligned_cols=68 Identities=16% Similarity=0.094 Sum_probs=44.4
Q ss_pred Ceeee--ccC--CCCCCHHHHHHHHHHHHhCCCcEEEEecc--cccccCCChhhhHHHHHHhHHhCCcEEEEechhhhhc
Q psy207 32 KKVNL--SVG--GCDPTEDQWKQLAQLFKERPSLFVFFDSA--YQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNFG 105 (109)
Q Consensus 32 ~kv~L--~~~--~~~lt~eqw~~i~~~~~~~p~~~~~~D~A--Y~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~fg 105 (109)
+++.+ .+| |+.++.+|+++|.+++|++ ++-+..|=| +-...... .+... +. .+... |+.++||+.|
T Consensus 132 ~~~~~e~~~te~GtVy~l~el~~i~~~~k~~-~l~LHmDGAR~~nA~valg--~~~~~---~~-~~~D~-v~~~~tK~g~ 203 (342)
T COG2008 132 PLAVLENTATEGGTVYPLDELEAISAVCKEH-GLPLHMDGARLANALVALG--VALKT---IK-SYVDS-VSFCLTKGGG 203 (342)
T ss_pred ceEEEeeccCCCceecCHHHHHHHHHHHHHh-CCceeechHHHHHHHHHcC--CCHHH---HH-hhCCE-EEEecccCCc
Confidence 45555 555 9999999999999999999 999999966 22222211 12212 22 33343 3677889877
Q ss_pred cC
Q psy207 106 LY 107 (109)
Q Consensus 106 ly 107 (109)
.-
T Consensus 204 ~~ 205 (342)
T COG2008 204 AP 205 (342)
T ss_pred ce
Confidence 53
No 319
>cd00411 Asparaginase Asparaginase (amidohydrolase): Asparaginases are tetrameric enzymes that catalyze the hydrolysis of asparagine to aspartic acid and ammonia. In bacteria, there are two classes of amidohydrolases, one highly specific for asparagine and localised to the periplasm, and a second (asparaginase- glutaminase) present in the cytosol that hydrolyzises both asparagine and glutamine with similar specificities.
Probab=80.09 E-value=4 Score=32.02 Aligned_cols=56 Identities=20% Similarity=0.401 Sum_probs=40.4
Q ss_pred ccCCCCCCHHHHHHHHHHHHhCCCcEEEEeccccccc----CCChhhhHHHHHHhHHhCCcEEEEec
Q psy207 37 SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFA----SGDLERDAFAVRYFAQEGFEFLCSQS 99 (109)
Q Consensus 37 ~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~----~g~~~~d~~~l~~~~~~~~~~~v~~S 99 (109)
+....++++++|.+|++.++++ - - | |.||. ++.+++.++++....+....+++.-|
T Consensus 54 ~idSs~~t~~~w~~l~~~I~~~-~--~--~--~dGiVVtHGTDTmeeTA~~L~~~l~~~kPVVlTGA 113 (323)
T cd00411 54 NIDSSDMTDEDWLKIAKDINEL-Y--D--S--YDGFVITHGTDTMEETAYFLSLTLENDKPVVLTGS 113 (323)
T ss_pred CCCCccCCHHHHHHHHHHHHHH-H--H--h--cCcEEEEcCcccHHHHHHHHHHHhcCCCCEEEECC
Confidence 7788999999999999999774 1 0 2 55553 34678888888766555667777654
No 320
>PRK09461 ansA cytoplasmic asparaginase I; Provisional
Probab=79.85 E-value=5 Score=31.69 Aligned_cols=55 Identities=22% Similarity=0.519 Sum_probs=40.4
Q ss_pred cCCCCCCHHHHHHHHHHHHhCCCcEEEEeccccccc----CCChhhhHHHHHHhHHh-CCcEEEEec
Q psy207 38 VGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFA----SGDLERDAFAVRYFAQE-GFEFLCSQS 99 (109)
Q Consensus 38 ~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~----~g~~~~d~~~l~~~~~~-~~~~~v~~S 99 (109)
....++|+++|.+|++.++++ . ..|.||. ++.+++.++.+....+. ...+++.-|
T Consensus 58 idSs~mt~~~w~~la~~I~~~---~----~~~dG~VVtHGTDTmeeTA~~L~~~l~~~~kPVVlTGA 117 (335)
T PRK09461 58 IDSSDMTPEDWQHIADDIKAN---Y----DDYDGFVILHGTDTMAYTASALSFMLENLGKPVIVTGS 117 (335)
T ss_pred CCcccCCHHHHHHHHHHHHHH---h----ccCCeEEEeeccchHHHHHHHHHHHHhCCCCCEEEeCC
Confidence 688999999999999999765 1 2477764 34678888888765433 567777655
No 321
>PLN03226 serine hydroxymethyltransferase; Provisional
Probab=79.49 E-value=4.9 Score=33.14 Aligned_cols=67 Identities=12% Similarity=0.195 Sum_probs=39.2
Q ss_pred CCCeeeecc--CCCCCCHHHHHHHHHHHHhCCCcEEEEecc-cccccCCChhhhHHHHHHhHHhCCcEEEEechhhhh-c
Q psy207 30 HPKKVNLSV--GGCDPTEDQWKQLAQLFKERPSLFVFFDSA-YQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNF-G 105 (109)
Q Consensus 30 ~~~kv~L~~--~~~~lt~eqw~~i~~~~~~~p~~~~~~D~A-Y~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~f-g 105 (109)
.++.|.++. .+++. ++++|.++++++ +.++++|+| ..|+...+...+ .+ + ... +++.|++|++ |
T Consensus 183 ~pklIv~~~S~~s~~~---D~a~i~~ia~~~-ga~LlvD~AH~~Gli~~~~~~~--p~----~-~~D-iv~~t~hK~L~G 250 (475)
T PLN03226 183 RPKLIIAGASAYPRDW---DYARMRKIADKV-GALLMCDMAHISGLVAAQEAAS--PF----E-YCD-VVTTTTHKSLRG 250 (475)
T ss_pred CCeEEEEecCcCCCcc---CHHHHHHHHHHc-CCEEEEEchhhhCcccCCCCCC--CC----C-CCe-EEEecCcccccC
Confidence 455554432 33333 366777888899 999999997 444443322111 11 1 223 6688999998 6
Q ss_pred cCC
Q psy207 106 LYS 108 (109)
Q Consensus 106 lyg 108 (109)
-.|
T Consensus 251 P~G 253 (475)
T PLN03226 251 PRG 253 (475)
T ss_pred CCc
Confidence 544
No 322
>PF12757 DUF3812: Protein of unknown function (DUF3812); InterPro: IPR024527 This family of fungal proteins represents the eisosome 1 family. Eisosome protein 1 is required for normal formation of eisosomes, large cytoplasmic protein assemblies that localize to specialised domains on plasma membrane and mark the site of endocytosis [].
Probab=78.58 E-value=1.4 Score=30.23 Aligned_cols=36 Identities=25% Similarity=0.346 Sum_probs=28.8
Q ss_pred CCCCCCeeeeccCCCCCCHHHHHHHHHHHHhCCCcEEEEecc
Q psy207 27 DDPHPKKVNLSVGGCDPTEDQWKQLAQLFKERPSLFVFFDSA 68 (109)
Q Consensus 27 ~d~~~~kv~L~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~A 68 (109)
...+..+|+|+ ||.-++++++..|+. -.+=|++|++
T Consensus 54 ~~~~~gkV~lG-GGl~m~~~evd~IA~-----~rVqPvLdeI 89 (126)
T PF12757_consen 54 RDENAGKVNLG-GGLFMDQEEVDAIAR-----KRVQPVLDEI 89 (126)
T ss_pred cccCCCeeeCC-CCcccCHHHHHHHHH-----HhcCCchHHH
Confidence 34566799998 888999999999988 2577888765
No 323
>PRK11096 ansB L-asparaginase II; Provisional
Probab=77.58 E-value=6 Score=31.58 Aligned_cols=56 Identities=16% Similarity=0.308 Sum_probs=39.8
Q ss_pred ccCCCCCCHHHHHHHHHHHHhCCCcEEEEeccccccc----CCChhhhHHHHHHhHHhCCcEEEEec
Q psy207 37 SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFA----SGDLERDAFAVRYFAQEGFEFLCSQS 99 (109)
Q Consensus 37 ~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~----~g~~~~d~~~l~~~~~~~~~~~v~~S 99 (109)
|....++++++|.+|++.++++ +..|.||. ++.+++.+..+....+....+++.-|
T Consensus 76 ~~dS~~~t~~~~~~l~~~i~~~-------~~~~dGiVVtHGTDTme~tA~~Ls~~~~~~kPVVlTGA 135 (347)
T PRK11096 76 NIGSQDMNDEVWLTLAKKINTD-------CDKTDGFVITHGTDTMEETAYFLDLTVKCDKPVVLVGA 135 (347)
T ss_pred cCCcccCCHHHHHHHHHHHHHh-------cCCCCEEEEeCCCchHHHHHHHHHHhccCCCCEEEeCC
Confidence 7889999999999999999764 23355543 23567777777665555567776654
No 324
>TIGR01814 kynureninase kynureninase. This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen.
Probab=76.65 E-value=4 Score=32.21 Aligned_cols=62 Identities=16% Similarity=0.104 Sum_probs=39.0
Q ss_pred CCCCeeee----ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhh
Q psy207 29 PHPKKVNL----SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNF 104 (109)
Q Consensus 29 ~~~~kv~L----~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~f 104 (109)
+.++.|.+ |.||.... +++|+++++++ ++++++|. .|.++.-.+ | + .+.+..++ +.|.-|.+
T Consensus 170 ~~t~lv~~~~v~~~tG~~~~---~~~i~~~~~~~-g~~~~vD~-aq~~G~~~i--d---~---~~~gvD~~-~~s~hK~l 235 (406)
T TIGR01814 170 DDIAVILLSGVQYYTGQLFD---MAAITRAAHAK-GALVGFDL-AHAVGNVPL--D---L---HDWGVDFA-CWCTYKYL 235 (406)
T ss_pred CCeEEEEEeccccccceecC---HHHHHHHHHHc-CCEEEEEc-ccccCCccc--c---c---ccCCCCEE-EEcCcccc
Confidence 44556666 77888775 67788888899 99999995 566643322 1 1 12344444 56667865
No 325
>PRK04183 glutamyl-tRNA(Gln) amidotransferase subunit D; Validated
Probab=74.90 E-value=6.3 Score=32.32 Aligned_cols=57 Identities=12% Similarity=0.254 Sum_probs=41.7
Q ss_pred ccCCCCCCHHHHHHHHHHHHhCCCcEEEEeccccccc----CCChhhhHHHHHHhHHhCCcEEEEec
Q psy207 37 SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFA----SGDLERDAFAVRYFAQEGFEFLCSQS 99 (109)
Q Consensus 37 ~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~----~g~~~~d~~~l~~~~~~~~~~~v~~S 99 (109)
|.-..++++++|.+|++.+++. + +.-|.||. ++.+++.++++..+......+++.-|
T Consensus 127 ~idS~~mtp~~W~~La~~I~~~---~---~~~~dGvVVtHGTDTM~yTA~aLs~~l~~~kPVVlTGA 187 (419)
T PRK04183 127 NILSENMTPEYWVEIAEAVYEE---I---KNGADGVVVAHGTDTMHYTAAALSFMLKTPVPIVFVGA 187 (419)
T ss_pred cCCchhCCHHHHHHHHHHHHHH---h---hccCCeEEEecCCchHHHHHHHHHHhcCCCCCEEEeCC
Confidence 8889999999999999999775 1 22366664 34677788888766555667776655
No 326
>TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated. Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream.
Probab=73.37 E-value=9.8 Score=31.77 Aligned_cols=62 Identities=19% Similarity=0.140 Sum_probs=41.8
Q ss_pred cCCCCCCHHHHHHHHHHHHhCCCcEEEEec------ccc------cccCCChhhhHH-HHHHhHHhCCcEEEEechhhhh
Q psy207 38 VGGCDPTEDQWKQLAQLFKERPSLFVFFDS------AYQ------GFASGDLERDAF-AVRYFAQEGFEFLCSQSFAKNF 104 (109)
Q Consensus 38 ~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~------AY~------gf~~g~~~~d~~-~l~~~~~~~~~~~v~~SfSK~f 104 (109)
-+|..++.+.++++.++++++ ++-+++|- ||. ++. | .+.+ ..|.+.+..+ .|..|+||..
T Consensus 196 ~GGqpvslenlr~V~~la~~~-GIplhLDgARl~nNA~fIk~rE~~a~-~---~si~eI~rE~~~~aD--svt~slsKgl 268 (467)
T TIGR02617 196 AGGQPVSLANLKAVYEIAKKY-DIPVVMDSARFAENAYFIKQREAEYK-N---WSIEQITRETYKYAD--MLAMSAKKDA 268 (467)
T ss_pred CCCEEeCHHHHHHHHHHHHHc-CCcEEEEhHHHHHHhhhhhhcchhhc-C---CCHHHHHHHhhccCC--EEEEEcCCCC
Confidence 478899999999999999999 99888985 452 332 2 1222 2233333333 3578899987
Q ss_pred cc
Q psy207 105 GL 106 (109)
Q Consensus 105 gl 106 (109)
|-
T Consensus 269 gA 270 (467)
T TIGR02617 269 MV 270 (467)
T ss_pred CC
Confidence 64
No 327
>COG0252 AnsB L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D [Amino acid transport and metabolism / Translation, ribosomal structure and biogenesis]
Probab=73.17 E-value=8.8 Score=30.79 Aligned_cols=58 Identities=19% Similarity=0.317 Sum_probs=41.7
Q ss_pred ccCCCCCCHHHHHHHHHHHHhC---C--CcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEech
Q psy207 37 SVGGCDPTEDQWKQLAQLFKER---P--SLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSF 100 (109)
Q Consensus 37 ~~~~~~lt~eqw~~i~~~~~~~---p--~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~Sf 100 (109)
|....++++++|.+|++.+++. + .-++|. || .+.+++.+.++....+....+++.-|+
T Consensus 74 ni~S~~m~~~~w~~la~~I~~~~~~~~~dGvVIt----HG--TDTmeeTA~~L~l~l~~~kPVVlTGam 136 (351)
T COG0252 74 NIDSSDMTPEDWLRLAEAINEALDDGDVDGVVIT----HG--TDTMEETAFFLSLTLNTPKPVVLTGAM 136 (351)
T ss_pred cCCcccCCHHHHHHHHHHHHHHhccCCCCeEEEe----CC--CchHHHHHHHHHHHhcCCCCEEEeCCC
Confidence 9999999999999999999874 1 113333 22 346888888888776666677766553
No 328
>TIGR00520 asnASE_II L-asparaginases, type II. Two related families of asparaginase (L-asparagine amidohydrolase, EC 3.5.1.1) are designated type I and type II according to the terminology in E. coli, which has both: L-asparaginase I is a low-affinity enzyme found in the cytoplasm, while L-asparaginase II is a high-affinity periplasmic enzyme synthesized with a cleavable signal sequence. This model describes L-asparaginases related to type II of E. coli. Both the cytoplasmic and the cell wall asparaginases of Saccharomyces cerevisiae belong to this set. Members of this set from Acinetobacter glutaminasificans and Pseudomonas fluorescens are described as having both glutaminase and asparaginase activitities. All members are homotetrameric.
Probab=72.65 E-value=8.5 Score=30.72 Aligned_cols=58 Identities=21% Similarity=0.293 Sum_probs=40.5
Q ss_pred ccCCCCCCHHHHHHHHHHHHhCCCcEEEEeccccccc----CCChhhhHHHHHHhHHhCCcEEEEec
Q psy207 37 SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFA----SGDLERDAFAVRYFAQEGFEFLCSQS 99 (109)
Q Consensus 37 ~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~----~g~~~~d~~~l~~~~~~~~~~~v~~S 99 (109)
+....++++++|.+|++.+++. +-|..|.|+. ++.+++.++.+....+....+++.-|
T Consensus 79 ~idS~~mt~~dw~~la~~I~~~-----~~~~~~~GiVVtHGTDTme~tA~~Lsl~l~~~kPVVlTGA 140 (349)
T TIGR00520 79 NVGSQDMNEEVLLKLAKGINEL-----LASDDYDGIVITHGTDTLEETAYFLDLTVKSDKPVVIVGA 140 (349)
T ss_pred CCCcccCCHHHHHHHHHHHHHH-----hccCCCCEEEEeCCcccHHHHHHHHHHHcCCCCCEEEECC
Confidence 7788999999999999999765 1134455554 34577788777765555556666644
No 329
>PF00710 Asparaginase: Asparaginase; InterPro: IPR006034 Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma []. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma [, ] - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die. Glutaminase, a similar enzyme, catalyses the deaminination of glutamine to glutamic acid and an ammonium ion []. Both enzymes are homotetramers []: two threonine residues in the N-terminal half of the proteins are involved in the catalytic activity.; GO: 0006520 cellular amino acid metabolic process; PDB: 1HFW_C 1HG1_B 1JSL_C 1HFK_A 1JSR_C 1HFJ_C 1HG0_D 1O7J_A 1ZQ1_A 1JJA_D ....
Probab=72.61 E-value=3.2 Score=32.35 Aligned_cols=56 Identities=20% Similarity=0.451 Sum_probs=37.3
Q ss_pred ccCCCCCCHHHHHHHHHHHHhCCCcEEEEeccccccc----CCChhhhHHHHHHhHHh-CCcEEEEec
Q psy207 37 SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFA----SGDLERDAFAVRYFAQE-GFEFLCSQS 99 (109)
Q Consensus 37 ~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~----~g~~~~d~~~l~~~~~~-~~~~~v~~S 99 (109)
+....++|+++|.+|++.+++. + |. |.|+. ++.+++.++.+..+.+. ...+++.-|
T Consensus 48 ~~dS~~~t~~~~~~la~~i~~~---~---~~-~~GvVVtHGTDTme~tA~~Ls~~l~~l~kPVVlTGa 108 (313)
T PF00710_consen 48 NIDSSDMTPEDWLELARAIQAA---L---DD-YDGVVVTHGTDTMEETAFFLSLLLDNLDKPVVLTGA 108 (313)
T ss_dssp EE-GGG--HHHHHHHHHHHHHH---H---TT-CSEEEEE--STTHHHHHHHHHHHEES-SSEEEEE--
T ss_pred ccCchhcCHHHHHHHHHHHHHH---H---Hh-cCeEEEecCchHHHHHHHHHHHHhcCCCCCEEEeCC
Confidence 7788999999999999999876 1 33 66654 34678888888776544 566666644
No 330
>TIGR02153 gatD_arch glutamyl-tRNA(Gln) amidotransferase, subunit D. This peptide is found only in the Archaea. It is part of a heterodimer, with GatE (TIGR00134), that acts as an amidotransferase on misacylated Glu-tRNA(Gln) to produce Gln-tRNA(Gln). The analogous amidotransferase found in bacteria is the GatABC system, although GatABC homologs in the Archaea appear to act instead on Asp-tRNA(Asn).
Probab=72.20 E-value=9.4 Score=31.13 Aligned_cols=58 Identities=9% Similarity=0.193 Sum_probs=40.8
Q ss_pred ccCCCCCCHHHHHHHHHHHHhCCCcEEEEeccccccc----CCChhhhHHHHHHhHHh-CCcEEEEech
Q psy207 37 SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFA----SGDLERDAFAVRYFAQE-GFEFLCSQSF 100 (109)
Q Consensus 37 ~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~----~g~~~~d~~~l~~~~~~-~~~~~v~~Sf 100 (109)
|....++++++|.+|++.++++ + +.-|.||. ++.+++.++++..+.+. ...+++.-|.
T Consensus 114 nidS~~mtp~~w~~La~~I~~~---~---~~~~dGvVVtHGTDTM~yTA~aLs~~l~~~~kPVVlTGAq 176 (404)
T TIGR02153 114 NILSENMKPEYWIKIAEAVAKA---L---KEGADGVVVAHGTDTMAYTAAALSFMFETLPVPVVLVGAQ 176 (404)
T ss_pred CCCchhCCHHHHHHHHHHHHHH---h---hcCCCcEEEecCChhHHHHHHHHHHHhhCCCCCEEEECCC
Confidence 7889999999999999999765 1 22345553 33577888888766544 5677766553
No 331
>PF14258 DUF4350: Domain of unknown function (DUF4350)
Probab=71.75 E-value=14 Score=21.96 Aligned_cols=36 Identities=6% Similarity=-0.001 Sum_probs=23.6
Q ss_pred CCCCeeeeccCCCCCC-HHHHHHHHHHHHhCCCcEEEEe
Q psy207 29 PHPKKVNLSVGGCDPT-EDQWKQLAQLFKERPSLFVFFD 66 (109)
Q Consensus 29 ~~~~kv~L~~~~~~lt-~eqw~~i~~~~~~~p~~~~~~D 66 (109)
.....+.++|... ++ ++|+++|.+++++= +.++|+|
T Consensus 34 ~~~tll~i~~~~~-~~~~~~~~~l~~~v~~G-~~lvl~a 70 (70)
T PF14258_consen 34 DDGTLLVIGPDLR-LSEPEEAEALLEWVEAG-NTLVLAA 70 (70)
T ss_pred CCCEEEEEeCCCC-CCchHHHHHHHHHHHcC-CEEEEeC
Confidence 3334566677755 56 58888888888644 6666653
No 332
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=70.97 E-value=12 Score=28.40 Aligned_cols=59 Identities=29% Similarity=0.367 Sum_probs=31.7
Q ss_pred CCCCHHHHHHHHHHHHhCCCcEEEE---ecc-----------cccccCCChhhhHHHHHHhHHhCCcEEEEechh
Q psy207 41 CDPTEDQWKQLAQLFKERPSLFVFF---DSA-----------YQGFASGDLERDAFAVRYFAQEGFEFLCSQSFA 101 (109)
Q Consensus 41 ~~lt~eqw~~i~~~~~~~p~~~~~~---D~A-----------Y~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfS 101 (109)
..++.|+|++|.+.++++ ++..+. |+. +.=.+++++. +.-.++.+++.+..++++-.+|
T Consensus 51 ~el~~e~~~~L~~~~~~~-gi~f~stpfd~~s~d~l~~~~~~~~KIaS~dl~-n~~lL~~~A~tgkPvIlSTG~s 123 (241)
T PF03102_consen 51 LELSEEQHKELFEYCKEL-GIDFFSTPFDEESVDFLEELGVPAYKIASGDLT-NLPLLEYIAKTGKPVILSTGMS 123 (241)
T ss_dssp HSS-HHHHHHHHHHHHHT-T-EEEEEE-SHHHHHHHHHHT-SEEEE-GGGTT--HHHHHHHHTT-S-EEEE-TT-
T ss_pred hcCCHHHHHHHHHHHHHc-CCEEEECCCCHHHHHHHHHcCCCEEEecccccc-CHHHHHHHHHhCCcEEEECCCC
Confidence 468999999999999999 975543 322 2223344332 2234555555666666655444
No 333
>PRK06148 hypothetical protein; Provisional
Probab=70.94 E-value=6.7 Score=35.37 Aligned_cols=59 Identities=15% Similarity=0.167 Sum_probs=41.4
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCcEEEEeccccccc-CCChhhhHHHHHHhHHhCCcEEEEechhhhhc
Q psy207 39 GGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFA-SGDLERDAFAVRYFAQEGFEFLCSQSFAKNFG 105 (109)
Q Consensus 39 ~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~-~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~fg 105 (109)
|...++++-|+++.++++++ +++.|+||...||+ .|. .-++...+ ...+.+ -+++|.+|
T Consensus 798 G~i~pp~~yl~~lr~lc~~~-g~llI~DEVqtGfGRtG~---~~~a~e~~-gv~PDi---vt~gK~lg 857 (1013)
T PRK06148 798 GQIFLPEGYLREVYAMVRAA-GGVCIADEVQVGFGRVGS---HWWAFETQ-GVVPDI---VTMGKPIG 857 (1013)
T ss_pred CCcCCCHHHHHHHHHHHHHh-CCEEEEEecccCCCCCCC---cchhhhhc-CCCcce---eeeccccc
Confidence 44477899999999999999 99999999999995 342 12233322 234553 45577765
No 334
>COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism]
Probab=70.75 E-value=6.7 Score=32.57 Aligned_cols=37 Identities=19% Similarity=0.422 Sum_probs=31.5
Q ss_pred ccCCC-CCCHHHHHHHHHHHHhCCCcEEEEecccccccC
Q psy207 37 SVGGC-DPTEDQWKQLAQLFKERPSLFVFFDSAYQGFAS 74 (109)
Q Consensus 37 ~~~~~-~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~ 74 (109)
+-||+ .+.+.-|+++-++|+++ ++++|+||.=-||+.
T Consensus 226 ~agG~~~pp~~Yl~~vr~iC~ky-~ILlI~DEV~tGFGR 263 (449)
T COG0161 226 GAGGMLVPPPGYLKRVREICDKY-GILLIADEVATGFGR 263 (449)
T ss_pred ccCCcccCChHHHHHHHHHHHHc-CcEEEeecceeCCCc
Confidence 33555 56777889999999999 999999999999974
No 335
>PRK06434 cystathionine gamma-lyase; Validated
Probab=70.71 E-value=8.2 Score=30.98 Aligned_cols=59 Identities=15% Similarity=0.115 Sum_probs=35.3
Q ss_pred CCeeee----ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhhcc
Q psy207 31 PKKVNL----SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNFGL 106 (109)
Q Consensus 31 ~~kv~L----~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~fgl 106 (109)
++.|.+ ||++.. .++++|+++++++ + +++|.++ +.+-. .. .+ +.+.. +++.|.+|+++-
T Consensus 149 tklv~~e~~snpt~~v---~Di~~I~~la~~~-~--lvVD~t~---~s~~~-~~--pl----~~gaD-ivv~S~tK~i~G 211 (384)
T PRK06434 149 YDLIYAESITNPTLKV---PDIKNVSSFCHEN-D--VIVDATF---ASPYN-QN--PL----DLGAD-VVIHSATKYISG 211 (384)
T ss_pred eeEEEEEcCCCCCcee---ecHHHHHHHHHHc-C--eEEECCC---CCccc-CC--ch----hcCCC-EEEeecccccCC
Confidence 455555 666644 5677888888888 7 3569994 33311 01 22 22333 568889999864
No 336
>COG2240 PdxK Pyridoxal/pyridoxine/pyridoxamine kinase [Coenzyme metabolism]
Probab=70.13 E-value=13 Score=29.01 Aligned_cols=35 Identities=14% Similarity=0.097 Sum_probs=23.3
Q ss_pred cCCCCCCHHHHHHHHHHHHhCCCcEEEEeccccccc
Q psy207 38 VGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFA 73 (109)
Q Consensus 38 ~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~ 73 (109)
.+|...+.|+++++++-+.+. +.+.-+|-.+-||.
T Consensus 48 ~~g~v~~~e~l~~~l~~l~~~-~~~~~~davltGYl 82 (281)
T COG2240 48 WTGIVMPPEQLADLLNGLEAI-DKLGECDAVLTGYL 82 (281)
T ss_pred CCCcCCCHHHHHHHHHHHHhc-ccccccCEEEEccC
Confidence 455666677777777776666 55666677777666
No 337
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=69.70 E-value=8.3 Score=29.22 Aligned_cols=36 Identities=19% Similarity=0.386 Sum_probs=29.6
Q ss_pred CCCCHHHHHHHHHHHHhCCCcEEE----------------EecccccccCCC
Q psy207 41 CDPTEDQWKQLAQLFKERPSLFVF----------------FDSAYQGFASGD 76 (109)
Q Consensus 41 ~~lt~eqw~~i~~~~~~~p~~~~~----------------~D~AY~gf~~g~ 76 (109)
..+++.-.++|+++++++|+++|| +|..||+.+.-+
T Consensus 106 VEfs~R~~reLl~~a~~R~Ni~PIL~DA~~P~~Y~~~Ve~VDviy~DVAQp~ 157 (231)
T COG1889 106 VEFSPRPMRELLDVAEKRPNIIPILEDARKPEKYRHLVEKVDVIYQDVAQPN 157 (231)
T ss_pred EEecchhHHHHHHHHHhCCCceeeecccCCcHHhhhhcccccEEEEecCCch
Confidence 367888899999999999899887 477788888664
No 338
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=69.22 E-value=5.9 Score=29.02 Aligned_cols=32 Identities=19% Similarity=0.281 Sum_probs=29.1
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEecccccccCCC
Q psy207 44 TEDQWKQLAQLFKERPSLFVFFDSAYQGFASGD 76 (109)
Q Consensus 44 t~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~ 76 (109)
|.+|++++++.+.++ ++-|++|.++-..+.++
T Consensus 50 t~~d~~~Lv~~~h~~-gi~VilD~V~NH~~~~~ 81 (316)
T PF00128_consen 50 TMEDFKELVDAAHKR-GIKVILDVVPNHTSDDH 81 (316)
T ss_dssp HHHHHHHHHHHHHHT-TCEEEEEEETSEEETTS
T ss_pred hhhhhhhhhhccccc-cceEEEeeecccccccc
Confidence 689999999999999 99999999998887664
No 339
>PLN02590 probable tyrosine decarboxylase
Probab=68.98 E-value=3.2 Score=34.98 Aligned_cols=30 Identities=27% Similarity=0.438 Sum_probs=26.4
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEecccccccC
Q psy207 44 TEDQWKQLAQLFKERPSLFVFFDSAYQGFAS 74 (109)
Q Consensus 44 t~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~ 74 (109)
.-+.+++|+++++++ ++++-+|-||-|++.
T Consensus 302 aiDpl~~Ia~i~~~~-g~WlHVDaA~GG~al 331 (539)
T PLN02590 302 AVDPLVPLGNIAKKY-GIWLHVDAAYAGNAC 331 (539)
T ss_pred ccCCHHHHHHHHHHh-CCeEEEecchhhhhh
Confidence 456788999999999 999999999999874
No 340
>PF02229 PC4: Transcriptional Coactivator p15 (PC4); InterPro: IPR003173 p15 has a bipartite structure composed of an amino-terminal regulatory domain and a carboxy-terminal cryptic DNA-binding domain []. The DNA-binding activity of the carboxy-terminal is disguised by the amino-terminal p15 domain. Activity is controlled by protein kinases that target the regulatory domain.; GO: 0003677 DNA binding, 0003713 transcription coactivator activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3PM7_B 2LTD_A 2LTT_B 3OBH_B 2L3A_B 2PHE_B 1PCF_B 2C62_B.
Probab=68.81 E-value=1.8 Score=25.50 Aligned_cols=17 Identities=35% Similarity=0.691 Sum_probs=12.9
Q ss_pred CCCCCCHHHHHHHHHHH
Q psy207 39 GGCDPTEDQWKQLAQLF 55 (109)
Q Consensus 39 ~~~~lt~eqw~~i~~~~ 55 (109)
-|..++++||++|.+.+
T Consensus 40 KGIsL~~~q~~~l~~~l 56 (56)
T PF02229_consen 40 KGISLTPEQWKELKEAL 56 (56)
T ss_dssp EEEEE-HHHHHHHHHH-
T ss_pred CEEEcCHHHHHHHHhhC
Confidence 37899999999998864
No 341
>PF08672 APC2: Anaphase promoting complex (APC) subunit 2; InterPro: IPR014786 The anaphase-promoting complex (APC) or cyclosome is a multi-subunit E3 protein ubiquitin ligase that regulates important events in mitosis such as the initiation of anaphase and exit from telophase. The APC, in conjunction with other enzymes, assembles multi-ubiquitin chains on a variety of regulatory proteins, thereby targeting them for proteolysis by the 26S proteasome. Anaphase is initiated when the APC triggers the destruction of securin, thereby allowing the protease, separase, to disrupt sister-chromatid cohesion. Securin ubiquitination by the APC is inhibited by cyclin-dependent kinase 1 (Cdk1)-dependent phosphorylation []. Forkhead Box M1 (FoxM1), which is a transcription factor that is over-expressed in many cancers, is degraded in late mitosis and early G1 phase by the APC/cyclosome (APC/C) E3 ubiquitin ligase []. The APC/C targets mitotic cyclins for destruction in mitosis and G1 phase and is then inactivated at S phase. It thereby generates alternating states of high and low cyclin-Cdk activity, which is required for the alternation of mitosis and DNA replication []. The APC/C is composed of at least 13 subunits that stay tightly associated throughout the cell cycle: APC1, APC2, APC4, APC5, APC9, APC11, CDC16, CDC23, CDC26, CDC27, DOC1, MND2 and SWM1[], []. In fission yeast the 13 subunits are known as: Apc1, Apc2, Nuc2, Apc4, Apc5, Cut9, Apc8, Apc10, Apc11, Hcn1, Apc13, Apc14 and Apc15 []. This entry represents a C-terminal domain found in APC subunit 2. ; PDB: 1LDD_A.
Probab=67.86 E-value=8.6 Score=23.05 Aligned_cols=32 Identities=16% Similarity=0.284 Sum_probs=21.6
Q ss_pred ccCCCCCCHHHHHHHHHHHHhCCCcEEEEeccc
Q psy207 37 SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAY 69 (109)
Q Consensus 37 ~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY 69 (109)
.|++.+.|.+|++++++-..+. +.+.+.+-.|
T Consensus 27 ~~~~~~~s~~eL~~fL~~lv~e-~~L~~~~G~Y 58 (60)
T PF08672_consen 27 DPGGYDISLEELQEFLDRLVEE-GKLECSGGSY 58 (60)
T ss_dssp GG--TT--HHHHHHHHHHHHHT-TSEE--TTEE
T ss_pred CCCCCCCCHHHHHHHHHHHHHC-CcEEecCCEE
Confidence 6789999999999999988887 6676666655
No 342
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=67.59 E-value=12 Score=27.08 Aligned_cols=32 Identities=19% Similarity=0.425 Sum_probs=21.7
Q ss_pred CCCCCeeeeccCCC----CCCHHHHHHHHHHHHhCCC
Q psy207 28 DPHPKKVNLSVGGC----DPTEDQWKQLAQLFKERPS 60 (109)
Q Consensus 28 d~~~~kv~L~~~~~----~lt~eqw~~i~~~~~~~p~ 60 (109)
....+.|.++|++. .++.|.|.+|++.+.++ +
T Consensus 102 ~~~~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~-~ 137 (247)
T PF01075_consen 102 SKDKPYIGINPGASWPSKRWPAEKWAELIERLKER-G 137 (247)
T ss_dssp -TTSSEEEEE---SSGGGS--HHHHHHHHHHHCCC-T
T ss_pred hccCCeEEEeecCCCccccCCHHHHHHHHHHHHhh-C
Confidence 34556788888886 68999999999999888 6
No 343
>TIGR02618 tyr_phenol_ly tyrosine phenol-lyase. This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212)
Probab=67.55 E-value=7.8 Score=32.14 Aligned_cols=30 Identities=20% Similarity=0.461 Sum_probs=27.4
Q ss_pred cCCCCCCHHHHHHHHHHHHhCCCcEEEEecc
Q psy207 38 VGGCDPTEDQWKQLAQLFKERPSLFVFFDSA 68 (109)
Q Consensus 38 ~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~A 68 (109)
.||..++.++|+++.++++++ ++.++.|-|
T Consensus 183 ~GG~pvs~~~l~~I~elA~~~-Gl~vi~DaA 212 (450)
T TIGR02618 183 AGGQPVSMANMREVRELCEAH-GIKVFYDAT 212 (450)
T ss_pred CCCeeCCHHHHHHHHHHHHHc-CCEEEEEcc
Confidence 458999999999999999999 999999976
No 344
>PRK07046 aminotransferase; Validated
Probab=67.00 E-value=11 Score=30.90 Aligned_cols=31 Identities=16% Similarity=0.209 Sum_probs=27.0
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCcEEEEecccc
Q psy207 39 GGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQ 70 (109)
Q Consensus 39 ~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~ 70 (109)
+...++++-|+++.++++++ +++.|+||+.-
T Consensus 232 G~~~p~~~fl~~lr~lc~~~-g~llI~DEV~t 262 (453)
T PRK07046 232 GMVLPEPGFHEALRELTRRY-GTLLVIDETHT 262 (453)
T ss_pred CCcCCCHHHHHHHHHHHHHh-CCEEEEEcccc
Confidence 33567889999999999999 99999999975
No 345
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=66.04 E-value=7.8 Score=29.90 Aligned_cols=29 Identities=21% Similarity=0.100 Sum_probs=24.5
Q ss_pred cCCCCCCHHHHHHHHHHHHhCCCc--EEEEec
Q psy207 38 VGGCDPTEDQWKQLAQLFKERPSL--FVFFDS 67 (109)
Q Consensus 38 ~~~~~lt~eqw~~i~~~~~~~p~~--~~~~D~ 67 (109)
+.+-.+|++|+++|++.++++ ++ +|-+|.
T Consensus 64 ~~~~~yT~~di~elv~yA~~r-gI~viPEiD~ 94 (303)
T cd02742 64 SPGGFYTYAQLKDIIEYAAAR-GIEVIPEIDM 94 (303)
T ss_pred CCCCeECHHHHHHHHHHHHHc-CCEEEEeccc
Confidence 445589999999999999999 96 777775
No 346
>PRK15400 lysine decarboxylase CadA; Provisional
Probab=64.94 E-value=12 Score=32.82 Aligned_cols=67 Identities=16% Similarity=0.152 Sum_probs=38.0
Q ss_pred eeee-ccC--CCCCCHHHHHHHHHHHHhCCCcEEEEecccccccC-CChhhhHHHHHHhHHhCCcEEEEechhhhhc
Q psy207 33 KVNL-SVG--GCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFAS-GDLERDAFAVRYFAQEGFEFLCSQSFAKNFG 105 (109)
Q Consensus 33 kv~L-~~~--~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~-g~~~~d~~~l~~~~~~~~~~~v~~SfSK~fg 105 (109)
.+.| ||| |...+- ++|++.+.++ + ++|||||-++.. ...-++..+++.-...++.++|+||-=|..+
T Consensus 300 ~~vit~pTYdG~~yd~---~~I~~~~~~~-~--ilvDEAwgah~~F~p~~~~~sam~~ga~~~~~i~vtQStHKtL~ 370 (714)
T PRK15400 300 HAVITNSTYDGLLYNT---DFIKKTLDVK-S--IHFDSAWVPYTNFSPIYEGKCGMSGGRVEGKVIYETQSTHKLLA 370 (714)
T ss_pred EEEEECCCCccEecCH---HHHHHHhCCC-C--EEEEccchhhhccCcccCCcChhhcCCCCCCceEEEEchhhccc
Confidence 3555 665 444444 5566666566 6 689999776541 1111122344322222366799999988754
No 347
>PF04019 DUF359: Protein of unknown function (DUF359); InterPro: IPR007164 This is family of archaebacterial proteins, which are about 170 amino acids in length. They have no known function. The most conserved portion of the protein contains the sequence GEEDL that may be important for its function.
Probab=64.84 E-value=40 Score=22.99 Aligned_cols=41 Identities=20% Similarity=0.323 Sum_probs=32.1
Q ss_pred ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhH
Q psy207 37 SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFA 88 (109)
Q Consensus 37 ~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~ 88 (109)
||-|+ +|.|=|..|.+.+.+..+..+++| | |+|...+....
T Consensus 41 NPpG~-It~el~~ai~~a~~~~~~~~I~V~--------G--EEDL~~lPail 81 (121)
T PF04019_consen 41 NPPGT-ITEELIEAIKKALESGKPVVIFVD--------G--EEDLAVLPAIL 81 (121)
T ss_pred CCCCc-ccHHHHHHHHHHHhCCCCEEEEEe--------C--hHHHHHHHHHH
Confidence 88776 599999999999866547788886 4 58988877644
No 348
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=64.54 E-value=8 Score=30.58 Aligned_cols=30 Identities=17% Similarity=0.169 Sum_probs=25.6
Q ss_pred ccCCCCCCHHHHHHHHHHHHhCCCc--EEEEec
Q psy207 37 SVGGCDPTEDQWKQLAQLFKERPSL--FVFFDS 67 (109)
Q Consensus 37 ~~~~~~lt~eqw~~i~~~~~~~p~~--~~~~D~ 67 (109)
.+.+.-+|++|+++|++.++++ ++ +|-+|.
T Consensus 77 ~~~~~~YT~~di~eiv~yA~~r-gI~VIPEID~ 108 (357)
T cd06563 77 TPYGGFYTQEEIREIVAYAAER-GITVIPEIDM 108 (357)
T ss_pred CccCceECHHHHHHHHHHHHHc-CCEEEEecCC
Confidence 4556789999999999999999 86 778875
No 349
>PLN02880 tyrosine decarboxylase
Probab=64.40 E-value=7.7 Score=32.12 Aligned_cols=29 Identities=28% Similarity=0.469 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHhCCCcEEEEecccccccC
Q psy207 45 EDQWKQLAQLFKERPSLFVFFDSAYQGFAS 74 (109)
Q Consensus 45 ~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~ 74 (109)
-+.+++|+++++++ ++++.+|-||-|+..
T Consensus 255 iDpl~eI~~i~~~~-~iwlHVDaA~gg~~~ 283 (490)
T PLN02880 255 VDPLLELGKIAKSN-GMWFHVDAAYAGSAC 283 (490)
T ss_pred cCcHHHHHHHHHHc-CCEEEEehhhHHHHH
Confidence 36688899999999 999999999999754
No 350
>PTZ00094 serine hydroxymethyltransferase; Provisional
Probab=63.88 E-value=12 Score=30.27 Aligned_cols=67 Identities=16% Similarity=0.223 Sum_probs=38.5
Q ss_pred CCCeeee--ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecc-cccccCCChhhhHHHHHHhHHhCCcEEEEechhhhh-c
Q psy207 30 HPKKVNL--SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSA-YQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNF-G 105 (109)
Q Consensus 30 ~~~kv~L--~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~A-Y~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~f-g 105 (109)
.++.|.+ +.+|+..+ +++|.++++++ +.++++|.+ ..|...++...+ .+ .+.. +++.|..|++ |
T Consensus 182 ~~~lvi~~~s~~g~~~d---i~~I~~i~~~~-ga~l~vDaaq~~G~i~~~~~~~--~~-----~~~D-~l~~S~hK~l~G 249 (452)
T PTZ00094 182 RPKLIIAGASAYPRDID---YKRFREICDSV-GAYLMADIAHTSGLVAAGVLPS--PF-----PYAD-VVTTTTHKSLRG 249 (452)
T ss_pred CCCEEEEeCCCCCCccC---HHHHHHHHHHc-CCEEEEeccchhccccCCCCCC--CC-----CCCc-EEEcCCccCCCC
Confidence 4555555 44554444 56677778888 999999987 334333322111 11 1233 5688999977 5
Q ss_pred cCC
Q psy207 106 LYS 108 (109)
Q Consensus 106 lyg 108 (109)
-.|
T Consensus 250 P~G 252 (452)
T PTZ00094 250 PRS 252 (452)
T ss_pred CCc
Confidence 443
No 351
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=63.33 E-value=10 Score=29.79 Aligned_cols=29 Identities=21% Similarity=0.225 Sum_probs=24.2
Q ss_pred cCCCCCCHHHHHHHHHHHHhCCCc--EEEEec
Q psy207 38 VGGCDPTEDQWKQLAQLFKERPSL--FVFFDS 67 (109)
Q Consensus 38 ~~~~~lt~eqw~~i~~~~~~~p~~--~~~~D~ 67 (109)
+.+.-+|++|+++|++.++++ ++ +|-+|.
T Consensus 67 ~~~~~YT~~di~elv~yA~~r-gI~vIPEiD~ 97 (329)
T cd06568 67 GPGGYYTQEDYKDIVAYAAER-HITVVPEIDM 97 (329)
T ss_pred CCCCcCCHHHHHHHHHHHHHc-CCEEEEecCC
Confidence 344579999999999999999 86 777775
No 352
>PF00728 Glyco_hydro_20: Glycosyl hydrolase family 20, catalytic domain; InterPro: IPR015883 Glycoside hydrolase family 20 GH20 from CAZY comprises enzymes with several known activities; beta-hexosaminidase (3.2.1.52 from EC); lacto-N-biosidase (3.2.1.140 from EC). Carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base in this family of enzymes. In the brain and other tissues, beta-hexosaminidase A degrades GM2 gangliosides; specifically, the enzyme hydrolyses terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. There are 3 forms of beta-hexosaminidase: hexosaminidase A is a trimer, with one alpha, one beta-A and one beta-B chain; hexosaminidase B is a tetramer of two beta-A and two beta-B chains; and hexosaminidase S is a homodimer of alpha chains. The two beta chains are derived from the cleavage of a precursor. Mutations in the beta-chain lead to Sandhoff disease, a lysosomal storage disorder characterised by accumulation of GM2 ganglioside [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3RPM_A 1C7T_A 1QBA_A 1QBB_A 1C7S_A 3RCN_A 2YL8_A 2YL6_A 2YLL_A 2YL5_C ....
Probab=62.20 E-value=7.2 Score=30.03 Aligned_cols=26 Identities=23% Similarity=0.298 Sum_probs=22.5
Q ss_pred CCCHHHHHHHHHHHHhCCCc--EEEEecc
Q psy207 42 DPTEDQWKQLAQLFKERPSL--FVFFDSA 68 (109)
Q Consensus 42 ~lt~eqw~~i~~~~~~~p~~--~~~~D~A 68 (109)
.+|++|+++|++.++++ ++ +|-+|.-
T Consensus 69 ~yT~~di~~lv~yA~~~-gI~VIPeid~P 96 (351)
T PF00728_consen 69 YYTKEDIRELVAYAKER-GIEVIPEIDTP 96 (351)
T ss_dssp EBEHHHHHHHHHHHHHT-T-EEEEEEEES
T ss_pred cCCHHHHHHHHHHHHHc-CCceeeeccCc
Confidence 89999999999999999 96 7788853
No 353
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=61.59 E-value=10 Score=29.27 Aligned_cols=31 Identities=6% Similarity=0.119 Sum_probs=24.9
Q ss_pred eccCCCCCCHHHHHHHHHHHHhCCCc--EEEEec
Q psy207 36 LSVGGCDPTEDQWKQLAQLFKERPSL--FVFFDS 67 (109)
Q Consensus 36 L~~~~~~lt~eqw~~i~~~~~~~p~~--~~~~D~ 67 (109)
+......+|++|+++|.+.++++ ++ +|.+|.
T Consensus 50 ~~~~~~~yT~~ei~ei~~yA~~~-gI~vIPeid~ 82 (301)
T cd06565 50 VGRMRGAYTKEEIREIDDYAAEL-GIEVIPLIQT 82 (301)
T ss_pred cccCCCCcCHHHHHHHHHHHHHc-CCEEEecCCC
Confidence 34445679999999999999999 86 666664
No 354
>smart00642 Aamy Alpha-amylase domain.
Probab=61.58 E-value=16 Score=25.88 Aligned_cols=30 Identities=20% Similarity=0.307 Sum_probs=26.4
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEecccccccC
Q psy207 44 TEDQWKQLAQLFKERPSLFVFFDSAYQGFAS 74 (109)
Q Consensus 44 t~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~ 74 (109)
|.++++++++.++++ ++-+++|...-..+.
T Consensus 68 t~~d~~~lv~~~h~~-Gi~vilD~V~NH~~~ 97 (166)
T smart00642 68 TMEDFKELVDAAHAR-GIKVILDVVINHTSD 97 (166)
T ss_pred CHHHHHHHHHHHHHC-CCEEEEEECCCCCCC
Confidence 679999999999999 999999998776553
No 355
>PRK05177 minC septum formation inhibitor; Reviewed
Probab=61.51 E-value=19 Score=27.10 Aligned_cols=32 Identities=19% Similarity=0.286 Sum_probs=26.7
Q ss_pred CeeeeccCCCCCCHHHHHHHHHHHHhCCCcEEE
Q psy207 32 KKVNLSVGGCDPTEDQWKQLAQLFKERPSLFVF 64 (109)
Q Consensus 32 ~kv~L~~~~~~lt~eqw~~i~~~~~~~p~~~~~ 64 (109)
-.|.|..++..++.+||.+|.++++++ ++.++
T Consensus 50 apvvld~~~~~~~~~~~~~L~~~l~~~-gl~~v 81 (239)
T PRK05177 50 RPVVLDLAGLAIERSQLAALLAELEAR-GIRIL 81 (239)
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHHC-CCEEE
Confidence 367788888888999999999999999 86443
No 356
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=61.33 E-value=8.7 Score=29.90 Aligned_cols=30 Identities=23% Similarity=0.294 Sum_probs=25.0
Q ss_pred cCCCCCCHHHHHHHHHHHHhCCCc--EEEEecc
Q psy207 38 VGGCDPTEDQWKQLAQLFKERPSL--FVFFDSA 68 (109)
Q Consensus 38 ~~~~~lt~eqw~~i~~~~~~~p~~--~~~~D~A 68 (109)
..+--+|++|+++|++.++++ ++ +|-+|..
T Consensus 74 ~~~~~YT~~di~eiv~yA~~r-gI~vIPEID~P 105 (326)
T cd06564 74 ANDGYYTKEEFKELIAYAKDR-GVNIIPEIDSP 105 (326)
T ss_pred CCCCcccHHHHHHHHHHHHHc-CCeEeccCCCc
Confidence 456678999999999999999 86 6777754
No 357
>COG1921 SelA Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism]
Probab=60.93 E-value=14 Score=30.31 Aligned_cols=54 Identities=28% Similarity=0.265 Sum_probs=34.8
Q ss_pred CCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhhc
Q psy207 42 DPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNFG 105 (109)
Q Consensus 42 ~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~fg 105 (109)
.++.+|+ +++.+++ ++.+++|.| +|.+-+....++.+...+..++ ..|--|.||
T Consensus 173 ~l~~~~l---~~ia~~~-~lpvivD~a-----Sg~~v~~e~~l~~~la~GaDLV-~~SgdKllg 226 (395)
T COG1921 173 MLSEEEL---VEIAHEK-GLPVIVDLA-----SGALVDKEPDLREALALGADLV-SFSGDKLLG 226 (395)
T ss_pred cccHHHH---HHHHHHc-CCCEEEecC-----CccccccccchhHHHhcCCCEE-EEecchhcC
Confidence 5566654 5555688 999999855 4432112224566667787754 788889886
No 358
>KOG1401|consensus
Probab=60.41 E-value=26 Score=29.04 Aligned_cols=50 Identities=16% Similarity=0.248 Sum_probs=37.9
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCc
Q psy207 39 GGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFE 93 (109)
Q Consensus 39 ~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~ 93 (109)
|-...++|-+..|.+.++++ ++++|+||.-.||..-. ..|+-.+|. ..+.
T Consensus 220 G~~p~~peFl~~L~k~C~~~-~vl~I~DEV~tG~gR~g---~~~a~e~~~-~~PD 269 (433)
T KOG1401|consen 220 GIIPADPEFLIGLRKECDDN-GVLLIFDEVQTGLGRLG---YGWAQEYFG-VTPD 269 (433)
T ss_pred CcccCCHHHHHHHHHHHhhc-CceEEeehhhhCccccc---hHHHHHHhC-cCCc
Confidence 33478999999999999999 99999999999986432 345555553 4455
No 359
>KOG0628|consensus
Probab=60.22 E-value=6.1 Score=33.16 Aligned_cols=32 Identities=28% Similarity=0.403 Sum_probs=28.8
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEecccccccCCC
Q psy207 44 TEDQWKQLAQLFKERPSLFVFFDSAYQGFASGD 76 (109)
Q Consensus 44 t~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~ 76 (109)
.-+++.+|..+++++ ++++-+|-||.|=+..-
T Consensus 250 a~D~l~elg~Vc~~~-glWLHVDAAYAGsa~iC 281 (511)
T KOG0628|consen 250 AFDELEELGPVCREE-GLWLHVDAAYAGSAFIC 281 (511)
T ss_pred ccccHHHhcchhhhc-CEEEEeehhhccccccC
Confidence 667889999999999 99999999999888763
No 360
>COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]
Probab=59.79 E-value=13 Score=30.79 Aligned_cols=38 Identities=26% Similarity=0.506 Sum_probs=30.3
Q ss_pred ccCCCCCCH-HHHHHHHHHHHhCCCcEEEEecccccccCC
Q psy207 37 SVGGCDPTE-DQWKQLAQLFKERPSLFVFFDSAYQGFASG 75 (109)
Q Consensus 37 ~~~~~~lt~-eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g 75 (109)
.-+.++... +.+++|++++++. ++++.+|-||-||.--
T Consensus 214 ~aGtT~~G~iDdi~~ia~ia~~~-~i~lHVDAA~GG~~~p 252 (460)
T COG0076 214 TAGTTDTGSIDDIEELADIAEEY-GIWLHVDAAFGGFLLP 252 (460)
T ss_pred EecCCCCCccCCHHHHHHHHHHc-CCcEEEEccccceeec
Confidence 333344444 8899999999999 9999999999999853
No 361
>KOG2712|consensus
Probab=59.09 E-value=10 Score=25.65 Aligned_cols=19 Identities=21% Similarity=0.450 Sum_probs=16.4
Q ss_pred ccCCCCCCHHHHHHHHHHH
Q psy207 37 SVGGCDPTEDQWKQLAQLF 55 (109)
Q Consensus 37 ~~~~~~lt~eqw~~i~~~~ 55 (109)
+--|..|+.+||.+|.+.+
T Consensus 77 gkKGISLs~~qW~~Lk~~~ 95 (108)
T KOG2712|consen 77 GKKGISLSLEQWSKLKEHI 95 (108)
T ss_pred CccccccCHHHHHHHHHHH
Confidence 4568899999999999877
No 362
>PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B ....
Probab=58.47 E-value=39 Score=26.06 Aligned_cols=65 Identities=22% Similarity=0.266 Sum_probs=39.1
Q ss_pred CCCCeeee----ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhh
Q psy207 29 PHPKKVNL----SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNF 104 (109)
Q Consensus 29 ~~~~kv~L----~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~f 104 (109)
+.++.|.+ +.+|...+ +++|.++++++ +.++++|-+.. ++..+++ +.+.+..++ +.|.-|.+
T Consensus 138 ~~~~lv~~~~~~~~tG~~~p---i~~I~~~~~~~-~~~~~vD~~~~-~g~~~id--------~~~~~~D~~-~~s~~Kl~ 203 (371)
T PF00266_consen 138 PDTRLVSISHVENSTGVRNP---IEEIAKLAHEY-GALLVVDAAQS-AGCVPID--------LDELGADFL-VFSSHKLG 203 (371)
T ss_dssp TTESEEEEESBETTTTBBSS---HHHHHHHHHHT-TSEEEEE-TTT-TTTSS----------TTTTTESEE-EEESTSTT
T ss_pred cccceEEeecccccccEEee---eceehhhhhcc-CCceeEechhc-ccccccc--------cccccccee-eecccccC
Confidence 66677766 77787665 56788888899 99999997643 4333322 112344445 45555655
Q ss_pred ccC
Q psy207 105 GLY 107 (109)
Q Consensus 105 gly 107 (109)
|=.
T Consensus 204 gp~ 206 (371)
T PF00266_consen 204 GPP 206 (371)
T ss_dssp SSS
T ss_pred CCC
Confidence 543
No 363
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=58.41 E-value=34 Score=26.23 Aligned_cols=54 Identities=9% Similarity=0.244 Sum_probs=37.2
Q ss_pred CCHHHHHHHHHHHHhCCCc---EEEEeccccc-------------ccCC--ChhhhHHHHHHhHHhCCcEEEE
Q psy207 43 PTEDQWKQLAQLFKERPSL---FVFFDSAYQG-------------FASG--DLERDAFAVRYFAQEGFEFLCS 97 (109)
Q Consensus 43 lt~eqw~~i~~~~~~~p~~---~~~~D~AY~g-------------f~~g--~~~~d~~~l~~~~~~~~~~~v~ 97 (109)
.+.++.+++++-++++ ++ .+++|.-|++ |..+ .++.-...++.+.+.+..+++.
T Consensus 22 ~s~~ev~~v~~~~r~~-~iP~D~i~lD~dw~~~~~~~~~~~~~~~ft~d~~~FPdp~~mi~~Lh~~G~k~v~~ 93 (292)
T cd06595 22 YSDEEYLALMDRFKKH-NIPLDVLVIDMDWHVTDIPSKYGSGWTGYSWNRKLFPDPEKLLQDLHDRGLKVTLN 93 (292)
T ss_pred CCHHHHHHHHHHHHHh-CCCccEEEEecccccccccccccCCcceeEEChhcCCCHHHHHHHHHHCCCEEEEE
Confidence 3789999999999998 76 7888987764 4432 1222334566677777776653
No 364
>KOG1405|consensus
Probab=58.34 E-value=27 Score=28.79 Aligned_cols=61 Identities=15% Similarity=0.223 Sum_probs=43.5
Q ss_pred CCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhH-HhCCcEEEEechhhhhccCC
Q psy207 41 CDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFA-QEGFEFLCSQSFAKNFGLYS 108 (109)
Q Consensus 41 ~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~-~~~~~~~v~~SfSK~fglyg 108 (109)
.--+++-.+++-++++++ ++..|+||.--|-+.-. +.|+=+++. +..+. .-+|||-|-..|
T Consensus 287 nhaSp~Ff~kLrdi~~Kh-~v~fivDEVQTGgGaTG---k~WaHehw~l~~PpD---~vTFSKK~q~gG 348 (484)
T KOG1405|consen 287 NHASPDFFRKLRDITKKH-GVAFIVDEVQTGGGATG---KFWAHEHWNLDSPPD---VVTFSKKFQTGG 348 (484)
T ss_pred ccCCHHHHHHHHHHHHhc-CeEEEeeeeecCCCccC---ceeeehhcCCCCCcc---ceehhhhhhcCc
Confidence 356899999999999999 99999999988776421 334444432 23345 448999886554
No 365
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=57.57 E-value=22 Score=28.95 Aligned_cols=61 Identities=23% Similarity=0.344 Sum_probs=38.9
Q ss_pred chhhhhcCCCCCCeeee----ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHH
Q psy207 20 AVNKAYLDDPHPKKVNL----SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVR 85 (109)
Q Consensus 20 ~l~~~~~~d~~~~kv~L----~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~ 85 (109)
.+.+.-.+++..+.|.+ .+||..- .+++|+++++++ +.+.|+|-.- .|+..+++-|.|.+.
T Consensus 121 ~v~~~L~~~~~~~~V~~vH~ETSTGvln---pl~~I~~~~k~~-g~l~iVDaVs-S~Gg~~~~vd~wgiD 185 (383)
T COG0075 121 EVEEALDKDPDIKAVAVVHNETSTGVLN---PLKEIAKAAKEH-GALLIVDAVS-SLGGEPLKVDEWGID 185 (383)
T ss_pred HHHHHHhcCCCccEEEEEeccCcccccC---cHHHHHHHHHHc-CCEEEEEecc-cCCCcccchhhcCcc
Confidence 44455555667777777 5555543 678899999999 9999999553 233223444545443
No 366
>COG0336 TrmD tRNA-(guanine-N1)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=57.48 E-value=24 Score=27.03 Aligned_cols=53 Identities=23% Similarity=0.299 Sum_probs=38.9
Q ss_pred CChhhchhhhhcCCCCCCeeeeccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccc
Q psy207 15 PIEVFAVNKAYLDDPHPKKVNLSVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGF 72 (109)
Q Consensus 15 ~d~~f~l~~~~~~d~~~~kv~L~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf 72 (109)
++|++.-.+..++..+++.|.++|-|..+|++.-+++++ + ..++++==-|.|+
T Consensus 64 ~epi~~Al~~~~~~~~~~vi~lsP~G~~f~Q~~a~eLa~----~-~~lv~iCGrYEGi 116 (240)
T COG0336 64 PEPLFDALDSVKAAKKAKVILLSPQGKPFTQARARELAK----E-EHLVLICGRYEGI 116 (240)
T ss_pred cHHHHHHHHHHHhccCCeEEEECCCCCccCHHHHHHHhc----C-CCEEEEeccccch
Confidence 467777777777766778888899999999998888875 3 3466654445544
No 367
>PLN02397 aspartate transaminase
Probab=57.46 E-value=14 Score=29.60 Aligned_cols=37 Identities=43% Similarity=0.803 Sum_probs=31.5
Q ss_pred cccccCCccCCCChhhchhhhhcCCCCCCeeeeccCC
Q psy207 4 ESSFSSVQQGPPIEVFAVNKAYLDDPHPKKVNLSVGG 40 (109)
Q Consensus 4 ~s~f~~v~~~p~d~~f~l~~~~~~d~~~~kv~L~~~~ 40 (109)
+|.|+.+...|.|+++.+.+.+..+..+.+++++.+.
T Consensus 21 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~l~~g~ 57 (423)
T PLN02397 21 SSRFEHVEPAPPDPILGVTEAFLADPSPVKLNLGVGA 57 (423)
T ss_pred hhHHHcCCcCCCChHHHHHHHHhhCCCcceEecccce
Confidence 3569999999999999999999988888888886554
No 368
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=57.41 E-value=17 Score=31.55 Aligned_cols=38 Identities=16% Similarity=0.154 Sum_probs=33.8
Q ss_pred ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCC
Q psy207 37 SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASG 75 (109)
Q Consensus 37 ~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g 75 (109)
.|+..==|+|+++++++.+-++ +|-||+|-.|-.|..+
T Consensus 205 Ap~sryGtPedfk~fVD~aH~~-GIgViLD~V~~HF~~d 242 (628)
T COG0296 205 APTSRYGTPEDFKALVDAAHQA-GIGVILDWVPNHFPPD 242 (628)
T ss_pred cccccCCCHHHHHHHHHHHHHc-CCEEEEEecCCcCCCC
Confidence 5666666999999999999999 9999999999999863
No 369
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=56.79 E-value=17 Score=27.62 Aligned_cols=32 Identities=22% Similarity=0.429 Sum_probs=24.8
Q ss_pred ccCCC----CCCHHHHHHHHHHHHhCCCcEEEEecc
Q psy207 37 SVGGC----DPTEDQWKQLAQLFKERPSLFVFFDSA 68 (109)
Q Consensus 37 ~~~~~----~lt~eqw~~i~~~~~~~p~~~~~~D~A 68 (109)
+++|. ..++.-++++++++++|+|++||+..|
T Consensus 96 g~~G~VYaVEfs~r~~rdL~~la~~R~NIiPIl~DA 131 (229)
T PF01269_consen 96 GPDGVVYAVEFSPRSMRDLLNLAKKRPNIIPILEDA 131 (229)
T ss_dssp TTTSEEEEEESSHHHHHHHHHHHHHSTTEEEEES-T
T ss_pred CCCCcEEEEEecchhHHHHHHHhccCCceeeeeccC
Confidence 45555 468999999999999999999885433
No 370
>COG2240 PdxK Pyridoxal/pyridoxine/pyridoxamine kinase [Coenzyme metabolism]
Probab=56.67 E-value=19 Score=28.18 Aligned_cols=55 Identities=15% Similarity=0.229 Sum_probs=44.0
Q ss_pred CCChhhchhhhhcCCCCCCeeeeccCCCCCCHHHHHHHHHHHHh----CCCcEEEEecc
Q psy207 14 PPIEVFAVNKAYLDDPHPKKVNLSVGGCDPTEDQWKQLAQLFKE----RPSLFVFFDSA 68 (109)
Q Consensus 14 p~d~~f~l~~~~~~d~~~~kv~L~~~~~~lt~eqw~~i~~~~~~----~p~~~~~~D~A 68 (109)
|++.+-++++...+-.....++---||+--+.+|.+.|++++++ +|+.+.++|-.
T Consensus 54 ~~e~l~~~l~~l~~~~~~~~~davltGYlgs~~qv~~i~~~v~~vk~~~P~~~~l~DPV 112 (281)
T COG2240 54 PPEQLADLLNGLEAIDKLGECDAVLTGYLGSAEQVRAIAGIVKAVKEANPNALYLCDPV 112 (281)
T ss_pred CHHHHHHHHHHHHhcccccccCEEEEccCCCHHHHHHHHHHHHHHhccCCCeEEEeCCc
Confidence 55556566777777666778888899999999999999999986 67878888854
No 371
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=54.69 E-value=25 Score=27.46 Aligned_cols=29 Identities=17% Similarity=0.273 Sum_probs=24.1
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCc--EEEEecc
Q psy207 39 GGCDPTEDQWKQLAQLFKERPSL--FVFFDSA 68 (109)
Q Consensus 39 ~~~~lt~eqw~~i~~~~~~~p~~--~~~~D~A 68 (109)
.+--+|++|+++|++.++++ ++ +|-+|..
T Consensus 61 ~~~~yT~~di~elv~yA~~r-gI~vIPEId~P 91 (311)
T cd06570 61 DGLYYTQEQIREVVAYARDR-GIRVVPEIDVP 91 (311)
T ss_pred CCCccCHHHHHHHHHHHHHc-CCEEEEeecCc
Confidence 35569999999999999999 86 6777753
No 372
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=54.27 E-value=50 Score=22.81 Aligned_cols=29 Identities=24% Similarity=0.383 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHhCCCcEEEEecccccccCC
Q psy207 46 DQWKQLAQLFKERPSLFVFFDSAYQGFASG 75 (109)
Q Consensus 46 eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g 75 (109)
.|.-.|+..+..+|+ +++.||...++...
T Consensus 101 ~qrv~laral~~~p~-illlDEPt~~LD~~ 129 (173)
T cd03230 101 KQRLALAQALLHDPE-LLILDEPTSGLDPE 129 (173)
T ss_pred HHHHHHHHHHHcCCC-EEEEeCCccCCCHH
Confidence 344556777777755 99999999999654
No 373
>PRK05481 lipoyl synthase; Provisional
Probab=54.25 E-value=67 Score=24.70 Aligned_cols=58 Identities=14% Similarity=0.236 Sum_probs=41.1
Q ss_pred CCCHHHHHHHHHHHHhC-CCcEEEEecccccccCCChhhhHH-HHHHhHHhCCcEEEEechhh
Q psy207 42 DPTEDQWKQLAQLFKER-PSLFVFFDSAYQGFASGDLERDAF-AVRYFAQEGFEFLCSQSFAK 102 (109)
Q Consensus 42 ~lt~eqw~~i~~~~~~~-p~~~~~~D~AY~gf~~g~~~~d~~-~l~~~~~~~~~~~v~~SfSK 102 (109)
..|.++|.++++.+++. |++.+-.|+.+ || |+-++|.. .+..+.+.+...+.+..||.
T Consensus 176 ~~t~e~~le~i~~ar~~~pgi~~~t~~Iv-Gf--GET~ed~~~tl~~lrel~~d~v~if~Ys~ 235 (289)
T PRK05481 176 GADYERSLELLKRAKELHPGIPTKSGLMV-GL--GETDEEVLEVMDDLRAAGVDILTIGQYLQ 235 (289)
T ss_pred CCCHHHHHHHHHHHHHhCCCCeEeeeeEE-EC--CCCHHHHHHHHHHHHhcCCCEEEEEccCC
Confidence 46999999999999875 78777777776 67 43445553 34445567777777777765
No 374
>KOG3843|consensus
Probab=54.17 E-value=3.4 Score=32.86 Aligned_cols=55 Identities=22% Similarity=0.230 Sum_probs=36.1
Q ss_pred CCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHh---HHhCCcEEEEechhhhhc
Q psy207 43 PTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYF---AQEGFEFLCSQSFAKNFG 105 (109)
Q Consensus 43 lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~---~~~~~~~~v~~SfSK~fg 105 (109)
-+|+.+++|+.++..+ ++.-++..||- +.+. ..++.. .+.+--=.+.||+.|||-
T Consensus 171 r~pd~leaiaaica~~-diphivnnayg-lqse------e~i~~iaa~~~~grida~vqsldknf~ 228 (432)
T KOG3843|consen 171 RSPDNLEAIAAICAAH-DIPHIVNNAYG-LQSE------ECIHKIAAAAECGRIDAFVQSLDKNFM 228 (432)
T ss_pred CCCchHHHHHHHHHcc-Cchhhhccccc-cchH------HHHHHHHHHhhhccHHHHHHHhhhcce
Confidence 4678899999999999 87668888883 3322 233332 233333345789999884
No 375
>cd01169 HMPP_kinase 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate kinase (HMPP-kinase) catalyzes two consecutive phosphorylation steps in the thiamine phosphate biosynthesis pathway, leading to the synthesis of vitamin B1. The first step is the phosphorylation of the hydroxyl group of HMP to form 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate (HMP-P) and then the phophorylation of HMP-P to form 4-amino-5-hydroxymethyl-2-methyl-pyrimidine pyrophosphate (HMP-PP), which is the substrate for the thiamine synthase coupling reaction.
Probab=53.64 E-value=28 Score=25.14 Aligned_cols=47 Identities=19% Similarity=0.275 Sum_probs=33.3
Q ss_pred hhhhhcCCCCCCeeeeccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccc
Q psy207 21 VNKAYLDDPHPKKVNLSVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQ 70 (109)
Q Consensus 21 l~~~~~~d~~~~kv~L~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~ 70 (109)
..+....+.+.+.|.+ |+..++++.+.+++.+++.|+..+++|-...
T Consensus 59 ~l~~~~~~~~~~~i~~---G~l~~~~~~~~i~~~~~~~~~~~vv~Dpv~~ 105 (242)
T cd01169 59 QLDAVLEDIPVDAIKI---GMLGSAEIIEAVAEALKDYPDIPVVLDPVMV 105 (242)
T ss_pred HHHHHHhCCCCCEEEE---CCCCCHHHHHHHHHHHHhCCCCcEEECCcee
Confidence 3445555544555554 7777899999999999886677888997643
No 376
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=53.47 E-value=16 Score=28.79 Aligned_cols=28 Identities=14% Similarity=0.147 Sum_probs=23.5
Q ss_pred CCCCCHHHHHHHHHHHHhCCCc--EEEEecc
Q psy207 40 GCDPTEDQWKQLAQLFKERPSL--FVFFDSA 68 (109)
Q Consensus 40 ~~~lt~eqw~~i~~~~~~~p~~--~~~~D~A 68 (109)
+.-+|++|+++|++.++++ ++ +|-+|..
T Consensus 64 ~~~YT~~di~eiv~yA~~r-gI~vIPEID~P 93 (348)
T cd06562 64 SEVYTPEDVKEIVEYARLR-GIRVIPEIDTP 93 (348)
T ss_pred CceECHHHHHHHHHHHHHc-CCEEEEeccCc
Confidence 4468999999999999999 86 7777754
No 377
>KOG0629|consensus
Probab=53.38 E-value=14 Score=30.88 Aligned_cols=51 Identities=22% Similarity=0.311 Sum_probs=38.0
Q ss_pred chhhhhcCCCCCCeeeeccCCCCCCH-HHHHHHHHHHHhCCCcEEEEeccccc
Q psy207 20 AVNKAYLDDPHPKKVNLSVGGCDPTE-DQWKQLAQLFKERPSLFVFFDSAYQG 71 (109)
Q Consensus 20 ~l~~~~~~d~~~~kv~L~~~~~~lt~-eqw~~i~~~~~~~p~~~~~~D~AY~g 71 (109)
.+.++-.+.-.|--|+.+.|.+.+.. +.+..|+++++++ +++.-+|-||-|
T Consensus 243 kile~k~kg~~Pf~vnaTaGTTV~GAFDdL~~iadiC~k~-~lWmHvDAAwGG 294 (510)
T KOG0629|consen 243 KILEAKAKGGVPFFVNATAGTTVLGAFDDLNGIADICEKH-KLWMHVDAAWGG 294 (510)
T ss_pred HHHHHHhcCCCCeEEEecCCceeeeccCcHHHHHHHHHhc-CEEEEeeccccc
Confidence 33444344445567777777776653 6788999999999 999999999998
No 378
>COG3345 GalA Alpha-galactosidase [Carbohydrate transport and metabolism]
Probab=53.33 E-value=18 Score=31.31 Aligned_cols=32 Identities=19% Similarity=0.161 Sum_probs=28.1
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCc-EEEEeccccc
Q psy207 39 GGCDPTEDQWKQLAQLFKERPSL-FVFFDSAYQG 71 (109)
Q Consensus 39 ~~~~lt~eqw~~i~~~~~~~p~~-~~~~D~AY~g 71 (109)
+-.+.|+|++.+.++.+|+. ++ ++++|..|+|
T Consensus 302 ~Yfd~t~e~ile~vk~akk~-gvE~FvlDDGwfg 334 (687)
T COG3345 302 YYFDFTEEEILENVKEAKKF-GVELFVLDDGWFG 334 (687)
T ss_pred eeecCCHHHHHHHHHHHhhc-CeEEEEEcccccc
Confidence 34599999999999999998 66 8999999994
No 379
>PRK04804 minC septum formation inhibitor; Reviewed
Probab=52.42 E-value=34 Score=25.43 Aligned_cols=32 Identities=13% Similarity=0.307 Sum_probs=26.7
Q ss_pred CeeeeccCCCCCCHHHHHHHHHHHHhCCCcEEE
Q psy207 32 KKVNLSVGGCDPTEDQWKQLAQLFKERPSLFVF 64 (109)
Q Consensus 32 ~kv~L~~~~~~lt~eqw~~i~~~~~~~p~~~~~ 64 (109)
..|.|..++..++.++|.+|.++++++ ++.++
T Consensus 46 ~~vvld~~~~~~~~~~~~~L~~~l~~~-gl~~~ 77 (221)
T PRK04804 46 APLVVNLSAIQDGDIDFVALKELLESR-QLIIV 77 (221)
T ss_pred CEEEEEecCcCCCHHHHHHHHHHHHHC-CCEEE
Confidence 467778888778889999999999999 87654
No 380
>TIGR00334 5S_RNA_mat_M5 ribonuclease M5. This family of orthologous proteins shows a weak but significant similarity to the central region of the DnaG-type DNA primase. The region of similarity is termed the Toprim (topoisomerase-primase) domain and is also shared by RecR, OLD family nucleases, and type IA and II topoisomerases.
Probab=52.01 E-value=26 Score=25.58 Aligned_cols=34 Identities=12% Similarity=0.354 Sum_probs=28.1
Q ss_pred ccCCCCCCHHHHHHHHHHHHhCCCcEEEEeccccc
Q psy207 37 SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQG 71 (109)
Q Consensus 37 ~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~g 71 (109)
.-.|+.++.+-++.|.+..+++ +++++.|.=|.|
T Consensus 27 ~T~Gs~i~~~~i~~i~~~~~~r-gVIIfTDpD~~G 60 (174)
T TIGR00334 27 ETNGSALKDETINLIKKAQKKQ-GVIILTDPDFPG 60 (174)
T ss_pred EECCCccCHHHHHHHHHHhhcC-CEEEEeCCCCch
Confidence 5567778999999999988888 999999976654
No 381
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=51.57 E-value=50 Score=23.41 Aligned_cols=32 Identities=16% Similarity=0.240 Sum_probs=23.3
Q ss_pred CCHHHHHHHHHHHHhCCCcEEEEecccccccCC
Q psy207 43 PTEDQWKQLAQLFKERPSLFVFFDSAYQGFASG 75 (109)
Q Consensus 43 lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g 75 (109)
-..-|.-.|+..+..+|+ ++++||...++...
T Consensus 140 ~G~~qrl~la~al~~~p~-lllLDEPt~~LD~~ 171 (214)
T TIGR02673 140 GGEQQRVAIARAIVNSPP-LLLADEPTGNLDPD 171 (214)
T ss_pred HHHHHHHHHHHHHhCCCC-EEEEeCCcccCCHH
Confidence 344556667777777765 88999999998654
No 382
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=51.48 E-value=40 Score=26.27 Aligned_cols=46 Identities=11% Similarity=0.099 Sum_probs=35.8
Q ss_pred hhhcCCCCCCeeeeccCCCCCCHHHHHHHHHHHHhCCC----cEEEEecc
Q psy207 23 KAYLDDPHPKKVNLSVGGCDPTEDQWKQLAQLFKERPS----LFVFFDSA 68 (109)
Q Consensus 23 ~~~~~d~~~~kv~L~~~~~~lt~eqw~~i~~~~~~~p~----~~~~~D~A 68 (109)
.......+|+...+.|.|..+.-||.+++.+.+...|. =++|+|.|
T Consensus 64 ~~i~~~~HPD~~~i~p~~~~I~idqIR~l~~~~~~~p~~~~~kV~II~~a 113 (290)
T PRK07276 64 RLIEQGEFSDVTVIEPQGQVIKTDTIRELVKNFSQSGYEGKQQVFIIKDA 113 (290)
T ss_pred HHHhcCCCCCeeeecCCCCcCCHHHHHHHHHHHhhCcccCCcEEEEeehh
Confidence 44556788999999999999999999999998876532 26777755
No 383
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=51.13 E-value=11 Score=24.48 Aligned_cols=28 Identities=18% Similarity=0.322 Sum_probs=21.8
Q ss_pred CCCCCHHHHHHHHHHHHhCCCcEEEEeccc
Q psy207 40 GCDPTEDQWKQLAQLFKERPSLFVFFDSAY 69 (109)
Q Consensus 40 ~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY 69 (109)
+..+|++|-++|+.+++.+ + +-++|+.|
T Consensus 28 ~i~it~~QA~~I~~~lr~k-~-inIfn~~~ 55 (85)
T PF11116_consen 28 NISITKKQAEQIANILRGK-N-INIFNEQE 55 (85)
T ss_pred CCCCCHHHHHHHHHHHhcC-C-CCCCCHHH
Confidence 5678999999999999988 6 44555444
No 384
>cd06569 GH20_Sm-chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=50.62 E-value=20 Score=29.44 Aligned_cols=30 Identities=13% Similarity=0.174 Sum_probs=24.5
Q ss_pred cCCCCCCHHHHHHHHHHHHhCCCc--EEEEecc
Q psy207 38 VGGCDPTEDQWKQLAQLFKERPSL--FVFFDSA 68 (109)
Q Consensus 38 ~~~~~lt~eqw~~i~~~~~~~p~~--~~~~D~A 68 (109)
..+--+|++|+++|++.++++ ++ +|-+|.-
T Consensus 89 ~~~g~YT~~di~eiv~yA~~r-gI~VIPEID~P 120 (445)
T cd06569 89 SGSGYYSRADYIEILKYAKAR-HIEVIPEIDMP 120 (445)
T ss_pred ccCCccCHHHHHHHHHHHHHc-CCEEEEccCCc
Confidence 345578999999999999999 86 6677753
No 385
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=50.30 E-value=48 Score=23.41 Aligned_cols=33 Identities=15% Similarity=0.292 Sum_probs=23.3
Q ss_pred CCCHHHHHHHHHHHHhCCCcEEEEecccccccCC
Q psy207 42 DPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASG 75 (109)
Q Consensus 42 ~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g 75 (109)
.-..-|.-.|+..+..+|. ++++||...++...
T Consensus 137 S~G~~qrv~la~al~~~p~-llllDEP~~~LD~~ 169 (213)
T cd03262 137 SGGQQQRVAIARALAMNPK-VMLFDEPTSALDPE 169 (213)
T ss_pred CHHHHHHHHHHHHHhcCCC-EEEEeCCccCCCHH
Confidence 3344555666676667766 89999999988654
No 386
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=50.17 E-value=44 Score=27.02 Aligned_cols=46 Identities=24% Similarity=0.336 Sum_probs=35.2
Q ss_pred hcCCCCCCeeeeccCCCCCCHHHHHHHHHHHHhCCC----cEEEEecccc
Q psy207 25 YLDDPHPKKVNLSVGGCDPTEDQWKQLAQLFKERPS----LFVFFDSAYQ 70 (109)
Q Consensus 25 ~~~d~~~~kv~L~~~~~~lt~eqw~~i~~~~~~~p~----~~~~~D~AY~ 70 (109)
+....+|....+.|.|..+..+|.+++.+.+..+|. -++|+|++-.
T Consensus 79 ~~~~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~ 128 (394)
T PRK07940 79 VLAGTHPDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADR 128 (394)
T ss_pred HhcCCCCCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhh
Confidence 344567777788898999999999999998876532 2788888744
No 387
>PF11054 Surface_antigen: Sporozoite TA4 surface antigen; InterPro: IPR021288 This family of proteins is a Eukaryotic family of surface antigens. One of the better characterised members of the family is the sporulated TA4 antigen. The TA4 gene encodes a single polypeptide of 25 kDa which contains a 17 and a 8kDa polypeptide [].
Probab=50.14 E-value=17 Score=28.05 Aligned_cols=21 Identities=24% Similarity=0.484 Sum_probs=16.4
Q ss_pred ccCCCCCCHHHHHHHHHHHHh
Q psy207 37 SVGGCDPTEDQWKQLAQLFKE 57 (109)
Q Consensus 37 ~~~~~~lt~eqw~~i~~~~~~ 57 (109)
+.+..-+|.|||++|++.+-.
T Consensus 212 ~~~saPFtqeQWdkIv~sLtg 232 (254)
T PF11054_consen 212 SDGSAPFTQEQWDKIVSSLTG 232 (254)
T ss_pred CCCCCCCCHHHHHHHHHHHcC
Confidence 444558999999999998743
No 388
>PRK13992 minC septum formation inhibitor; Provisional
Probab=49.71 E-value=33 Score=25.27 Aligned_cols=30 Identities=13% Similarity=0.218 Sum_probs=25.4
Q ss_pred eeeeccCCCCCCHHHHHHHHHHHHhCCCcEE
Q psy207 33 KVNLSVGGCDPTEDQWKQLAQLFKERPSLFV 63 (109)
Q Consensus 33 kv~L~~~~~~lt~eqw~~i~~~~~~~p~~~~ 63 (109)
+|.|+..+..++.+||++|.++++++ ++.+
T Consensus 44 ~v~l~~~~~~~~~~~~~~l~~~l~~~-~l~~ 73 (205)
T PRK13992 44 KISLMIENHEKHIQDIPKIVSKLRNL-GLEV 73 (205)
T ss_pred eEEEEecCCCCCHHHHHHHHHHHHHC-CCEE
Confidence 57777888888889999999999999 8654
No 389
>PRK00513 minC septum formation inhibitor; Reviewed
Probab=49.56 E-value=34 Score=25.31 Aligned_cols=32 Identities=25% Similarity=0.330 Sum_probs=26.5
Q ss_pred CeeeeccCCCCCCHHHHHHHHHHHHhCCCcEEE
Q psy207 32 KKVNLSVGGCDPTEDQWKQLAQLFKERPSLFVF 64 (109)
Q Consensus 32 ~kv~L~~~~~~lt~eqw~~i~~~~~~~p~~~~~ 64 (109)
-.+.|..++..++.+||++|.++++++ +.+.+
T Consensus 50 ~~v~l~~~~r~l~~~~~~~l~~~l~~~-~~~~v 81 (214)
T PRK00513 50 ATVHVKVGNRLLDEEQLQELKDVITER-RQTAV 81 (214)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHHhC-CCeEE
Confidence 367778888889999999999999998 65544
No 390
>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e.g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].
Probab=49.27 E-value=78 Score=21.20 Aligned_cols=65 Identities=18% Similarity=0.133 Sum_probs=40.8
Q ss_pred CeeeeccCCCCCCH-HHHHHHHHHHHhCCCcEEEEecccc-cccCCChhhhHHHHHHhHHhCCcEEEEec
Q psy207 32 KKVNLSVGGCDPTE-DQWKQLAQLFKERPSLFVFFDSAYQ-GFASGDLERDAFAVRYFAQEGFEFLCSQS 99 (109)
Q Consensus 32 ~kv~L~~~~~~lt~-eqw~~i~~~~~~~p~~~~~~D~AY~-gf~~g~~~~d~~~l~~~~~~~~~~~v~~S 99 (109)
+||+|.-+-..... +-..++++.+++..++-+++|.-.. .....+ ...|..+.+ ....-++|+-|
T Consensus 1 ~kVfI~Ys~d~~~h~~~V~~la~~L~~~~g~~V~lD~~~~~~i~~~g--~~~W~~~~~-~~ad~Vliv~S 67 (150)
T PF08357_consen 1 RKVFISYSHDSEEHKEWVLALAEFLRQNCGIDVILDQWELNEIARQG--PPRWMERQI-READKVLIVCS 67 (150)
T ss_pred CeEEEEeCCCCHHHHHHHHHHHHHHHhccCCceeecHHhhcccccCC--HHHHHHHHH-hcCCEEEEEec
Confidence 46667444444444 3357888888887688899998665 233322 456666654 46667777766
No 391
>PLN02263 serine decarboxylase
Probab=49.09 E-value=25 Score=29.34 Aligned_cols=29 Identities=17% Similarity=0.332 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHhCCCc-----EEEEecccccccC
Q psy207 45 EDQWKQLAQLFKERPSL-----FVFFDSAYQGFAS 74 (109)
Q Consensus 45 ~eqw~~i~~~~~~~p~~-----~~~~D~AY~gf~~ 74 (109)
-+.+++|+++++++ ++ ++-+|-||-|+.-
T Consensus 244 iDpi~eIa~i~~~~-g~~~~~iwlHVDAA~GG~~l 277 (470)
T PLN02263 244 VDDLDLVIKTLEEC-GFSQDRFYIHCDGALFGLMM 277 (470)
T ss_pred CCCHHHHHHHHHHc-CCccCCeeEEEeccchhhHh
Confidence 46788888988888 75 9999999999764
No 392
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=48.74 E-value=82 Score=21.85 Aligned_cols=31 Identities=19% Similarity=0.299 Sum_probs=22.5
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEecccccccCC
Q psy207 44 TEDQWKQLAQLFKERPSLFVFFDSAYQGFASG 75 (109)
Q Consensus 44 t~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g 75 (109)
..-|.-.|+..+..+|+ ++++||.+.++...
T Consensus 101 G~~qrl~laral~~~p~-llllDEP~~~LD~~ 131 (180)
T cd03214 101 GERQRVLLARALAQEPP-ILLLDEPTSHLDIA 131 (180)
T ss_pred HHHHHHHHHHHHhcCCC-EEEEeCCccCCCHH
Confidence 34555566666667755 89999999999654
No 393
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=48.68 E-value=58 Score=24.88 Aligned_cols=48 Identities=15% Similarity=0.348 Sum_probs=31.6
Q ss_pred HHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEE
Q psy207 49 KQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCS 97 (109)
Q Consensus 49 ~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~ 97 (109)
-+|+..+..+|. ++++||.+.|...=...+-...++.+.+.+.-+++.
T Consensus 148 ~EIARaLa~~P~-fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLIT 195 (243)
T COG1137 148 VEIARALAANPK-FILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLIT 195 (243)
T ss_pred HHHHHHHhcCCC-EEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEc
Confidence 357777777855 899999988876533333335566677777666553
No 394
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=48.48 E-value=50 Score=25.58 Aligned_cols=48 Identities=19% Similarity=0.271 Sum_probs=34.8
Q ss_pred chhhhhcCCCCCCeeeecc-----CCCCCCHHHHHHHHHHHHhCCCc-EEEEecc
Q psy207 20 AVNKAYLDDPHPKKVNLSV-----GGCDPTEDQWKQLAQLFKERPSL-FVFFDSA 68 (109)
Q Consensus 20 ~l~~~~~~d~~~~kv~L~~-----~~~~lt~eqw~~i~~~~~~~p~~-~~~~D~A 68 (109)
.+.++.-+|....-++|=| .-..+|+|+|+++++-++.. +. +++.|..
T Consensus 69 ~l~QALIkDKr~~nL~lLPAsQtrdKdalt~E~v~~vv~eL~~~-~fDyIi~DsP 122 (272)
T COG2894 69 TLNQALIKDKRLENLFLLPASQTRDKDALTPEGVKKVVNELKAM-DFDYIIIDSP 122 (272)
T ss_pred chhhHhhccccCCceEecccccccCcccCCHHHHHHHHHHHHhc-CCCEEEecCc
Confidence 4567777777776666633 33489999999999999865 43 7888743
No 395
>COG1909 Uncharacterized protein conserved in archaea [Function unknown]
Probab=48.30 E-value=69 Score=23.25 Aligned_cols=51 Identities=16% Similarity=0.176 Sum_probs=36.0
Q ss_pred ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEe
Q psy207 37 SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQ 98 (109)
Q Consensus 37 ~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~ 98 (109)
||-|+ +|.|-|+.|-+.+....++.+++| | |+|...+....-.....+|++
T Consensus 86 NpPGt-It~el~~ai~~a~~~~k~~~I~V~--------G--EEDLa~lp~i~~ap~~tvV~Y 136 (167)
T COG1909 86 NPPGT-ITFELIKAIEKALEDGKRVRIFVD--------G--EEDLAVLPAILYAPLGTVVLY 136 (167)
T ss_pred CCCcE-eEHHHHHHHHHHHhcCCcEEEEEe--------C--hhHHHHhHHHhhcCCCCEEEe
Confidence 77776 599999999999876535788886 4 488877765433345556554
No 396
>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....
Probab=48.03 E-value=19 Score=28.69 Aligned_cols=27 Identities=22% Similarity=0.544 Sum_probs=22.5
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEeccccc
Q psy207 44 TEDQWKQLAQLFKERPSLFVFFDSAYQG 71 (109)
Q Consensus 44 t~eqw~~i~~~~~~~p~~~~~~D~AY~g 71 (109)
.-+.+.+|+++++++ ++++-+|-||-|
T Consensus 209 a~D~l~~i~~i~~~~-~~wlHVDaA~gg 235 (373)
T PF00282_consen 209 AIDPLEEIADICEKY-NIWLHVDAAYGG 235 (373)
T ss_dssp BB-SHHHHHHHHHHC-T-EEEEEETTGG
T ss_pred cccCHHHHhhhcccc-ceeeeecccccc
Confidence 447788899999999 999999999999
No 397
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=47.98 E-value=61 Score=22.90 Aligned_cols=37 Identities=14% Similarity=0.136 Sum_probs=25.9
Q ss_pred cCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCC
Q psy207 38 VGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASG 75 (109)
Q Consensus 38 ~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g 75 (109)
|....-...|.-.|+..+..+|. +++.||...++...
T Consensus 124 ~~~LS~G~~qrv~laral~~~p~-llllDEPt~~LD~~ 160 (205)
T cd03226 124 PLSLSGGQKQRLAIAAALLSGKD-LLIFDEPTSGLDYK 160 (205)
T ss_pred chhCCHHHHHHHHHHHHHHhCCC-EEEEeCCCccCCHH
Confidence 33444445566667777777855 99999999998654
No 398
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=47.53 E-value=68 Score=22.82 Aligned_cols=31 Identities=13% Similarity=0.213 Sum_probs=21.9
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEecccccccCC
Q psy207 44 TEDQWKQLAQLFKERPSLFVFFDSAYQGFASG 75 (109)
Q Consensus 44 t~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g 75 (109)
...|.-.|+..+..+|. ++++||...++...
T Consensus 131 G~~qrl~la~al~~~p~-llllDEPt~~LD~~ 161 (207)
T PRK13539 131 GQKRRVALARLLVSNRP-IWILDEPTAALDAA 161 (207)
T ss_pred HHHHHHHHHHHHhcCCC-EEEEeCCcccCCHH
Confidence 33444555666666755 89999999999755
No 399
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=47.31 E-value=57 Score=24.02 Aligned_cols=31 Identities=16% Similarity=0.331 Sum_probs=22.8
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEecccccccCC
Q psy207 44 TEDQWKQLAQLFKERPSLFVFFDSAYQGFASG 75 (109)
Q Consensus 44 t~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g 75 (109)
..-|.-.|+..+..+|. ++++||...++...
T Consensus 156 G~~qrv~laral~~~p~-llllDEPt~~LD~~ 186 (257)
T PRK10619 156 GQQQRVSIARALAMEPE-VLLFDEPTSALDPE 186 (257)
T ss_pred HHHHHHHHHHHHhcCCC-EEEEeCCcccCCHH
Confidence 34455667777777866 88999999988654
No 400
>PLN02757 sirohydrochlorine ferrochelatase
Probab=46.31 E-value=61 Score=22.74 Aligned_cols=57 Identities=11% Similarity=0.155 Sum_probs=35.1
Q ss_pred ccCCCCCC-HHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEE
Q psy207 37 SVGGCDPT-EDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCS 97 (109)
Q Consensus 37 ~~~~~~lt-~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~ 97 (109)
+=|..+.. .+++.++++.++++ .-+..+..+|.+++..++++ .+..+.+.+.+-+++
T Consensus 20 gHGSrd~~a~~~~~~la~~l~~~-~~~~~V~~aFle~~~Psl~e---al~~l~~~g~~~vvV 77 (154)
T PLN02757 20 DHGSRRKESNLMLEEFVAMYKQK-TGHPIVEPAHMELAEPSIKD---AFGRCVEQGASRVIV 77 (154)
T ss_pred eCCCCCHHHHHHHHHHHHHHHhh-CCCCcEEEEEEecCCCCHHH---HHHHHHHCCCCEEEE
Confidence 43333333 47788888888877 33566788899888776643 444444445444433
No 401
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=45.88 E-value=33 Score=28.83 Aligned_cols=32 Identities=25% Similarity=0.266 Sum_probs=28.1
Q ss_pred CCCHHHHHHHHHHHHhCCCcEEEEecccccccC
Q psy207 42 DPTEDQWKQLAQLFKERPSLFVFFDSAYQGFAS 74 (109)
Q Consensus 42 ~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~ 74 (109)
-=|.++++++++.+.++ ++=+|+|..|-.++.
T Consensus 156 ~G~~~e~k~lV~~aH~~-Gi~VilD~V~NH~~~ 187 (542)
T TIGR02402 156 YGGPDDLKALVDAAHGL-GLGVILDVVYNHFGP 187 (542)
T ss_pred cCCHHHHHHHHHHHHHC-CCEEEEEEccCCCCC
Confidence 33689999999999999 999999999987753
No 402
>KOG1359|consensus
Probab=45.50 E-value=28 Score=28.10 Aligned_cols=62 Identities=19% Similarity=0.233 Sum_probs=39.1
Q ss_pred CCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhhc
Q psy207 41 CDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNFG 105 (109)
Q Consensus 41 ~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~fg 105 (109)
+|=+-.-+++|.++.++. +.++++||+-.-+-.|.-.+. .-+.+--++.--++-.+++|+.|
T Consensus 205 MDGdiaPl~ei~~La~kY-gaLlfiDecHaTgf~G~tGrG--t~E~~~vm~~vdiinsTLgKAlG 266 (417)
T KOG1359|consen 205 MDGDIAPLEEISQLAKKY-GALLFIDECHATGFFGETGRG--TAEEFGVMGDVDIINSTLGKALG 266 (417)
T ss_pred cCCCcccHHHHHHHHHhc-CcEEEEeecccceeecCCCCC--hHHHhCCCCcceehhhhhhhhhc
Confidence 344455677888888888 999999999655444421111 11222224555666778999988
No 403
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=45.35 E-value=74 Score=21.82 Aligned_cols=28 Identities=11% Similarity=0.281 Sum_probs=19.3
Q ss_pred HHHHHHHHHHhCCCcEEEEecccccccCC
Q psy207 47 QWKQLAQLFKERPSLFVFFDSAYQGFASG 75 (109)
Q Consensus 47 qw~~i~~~~~~~p~~~~~~D~AY~gf~~g 75 (109)
|.-.++..+-..|. ++++||...++...
T Consensus 89 qrl~laral~~~p~-illlDEP~~~LD~~ 116 (163)
T cd03216 89 QMVEIARALARNAR-LLILDEPTAALTPA 116 (163)
T ss_pred HHHHHHHHHhcCCC-EEEEECCCcCCCHH
Confidence 34445555656755 88889999988644
No 404
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=45.18 E-value=48 Score=25.67 Aligned_cols=34 Identities=15% Similarity=0.230 Sum_probs=27.3
Q ss_pred CCeeeeccC-CC----CCCHHHHHHHHHHHHhCCCcEEEE
Q psy207 31 PKKVNLSVG-GC----DPTEDQWKQLAQLFKERPSLFVFF 65 (109)
Q Consensus 31 ~~kv~L~~~-~~----~lt~eqw~~i~~~~~~~p~~~~~~ 65 (109)
.+.|.++|+ +. .++.|+|+++++.+.++ +..+++
T Consensus 175 ~~~i~i~pg~s~~~~K~wp~e~~~~l~~~l~~~-~~~Vvl 213 (334)
T COG0859 175 RPYIVINPGASRGSAKRWPLEHYAELAELLIAK-GYQVVL 213 (334)
T ss_pred CCeEEEeccccccccCCCCHHHHHHHHHHHHHC-CCEEEE
Confidence 578888998 33 68999999999999999 754433
No 405
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=45.14 E-value=85 Score=23.41 Aligned_cols=38 Identities=16% Similarity=0.097 Sum_probs=26.8
Q ss_pred ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCC
Q psy207 37 SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASG 75 (109)
Q Consensus 37 ~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g 75 (109)
.+....-..-|.-.|+..+..+|+ ++++||...++...
T Consensus 148 ~~~~LS~Ge~qrl~laral~~~p~-lllLDEPt~~LD~~ 185 (268)
T PRK10419 148 RPPQLSGGQLQRVCLARALAVEPK-LLILDEAVSNLDLV 185 (268)
T ss_pred CCccCChHHHHHHHHHHHHhcCCC-EEEEeCCCcccCHH
Confidence 333444456666777777777865 89999999998644
No 406
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=44.85 E-value=67 Score=22.38 Aligned_cols=29 Identities=17% Similarity=0.349 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHhCCCcEEEEecccccccCC
Q psy207 46 DQWKQLAQLFKERPSLFVFFDSAYQGFASG 75 (109)
Q Consensus 46 eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g 75 (109)
-|.-.|+..+..+|+ ++++||...++...
T Consensus 133 ~qrv~laral~~~p~-llllDEPt~~LD~~ 161 (190)
T TIGR01166 133 KKRVAIAGAVAMRPD-VLLLDEPTAGLDPA 161 (190)
T ss_pred HHHHHHHHHHhcCCC-EEEEcCCcccCCHH
Confidence 334445555556755 99999999998654
No 407
>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=44.47 E-value=33 Score=26.82 Aligned_cols=50 Identities=20% Similarity=0.227 Sum_probs=36.4
Q ss_pred ChhhchhhhhcCCCCCCeeee---ccCCCCCCHHHHHHHHHHHHhCCCcEEEE
Q psy207 16 IEVFAVNKAYLDDPHPKKVNL---SVGGCDPTEDQWKQLAQLFKERPSLFVFF 65 (109)
Q Consensus 16 d~~f~l~~~~~~d~~~~kv~L---~~~~~~lt~eqw~~i~~~~~~~p~~~~~~ 65 (109)
|..-.+.+.-..|++.+.|.| +|||....-++..+-++-++++..+++++
T Consensus 83 ~~~~~~l~~~~~~~~vk~vvL~inSPGG~v~as~~i~~~l~~l~~~~PV~v~v 135 (317)
T COG0616 83 DDIEEILRAARADPSVKAVVLRINSPGGSVVASELIARALKRLRAKKPVVVSV 135 (317)
T ss_pred HHHHHHHHHHhcCCCCceEEEEEECcCCchhHHHHHHHHHHHHhhcCCEEEEE
Confidence 344455677777888888888 99999999998877777777661354444
No 408
>PF08538 DUF1749: Protein of unknown function (DUF1749); InterPro: IPR013744 This is a plant and fungal family of unknown function. This family contains many hypothetical proteins. ; PDB: 2Q0X_B.
Probab=44.34 E-value=37 Score=26.77 Aligned_cols=55 Identities=20% Similarity=0.266 Sum_probs=30.8
Q ss_pred eeee-ccCCCCCCHHHHHHHHHHHHhCCCc---EEEEecccccccCCChhhhHHHHHHhH
Q psy207 33 KVNL-SVGGCDPTEDQWKQLAQLFKERPSL---FVFFDSAYQGFASGDLERDAFAVRYFA 88 (109)
Q Consensus 33 kv~L-~~~~~~lt~eqw~~i~~~~~~~p~~---~~~~D~AY~gf~~g~~~~d~~~l~~~~ 88 (109)
.|++ +-|.--+|-.-...|++.+.+. ++ -+.+-.+|.||+.+++++|+.-|..++
T Consensus 36 llfIGGLtDGl~tvpY~~~La~aL~~~-~wsl~q~~LsSSy~G~G~~SL~~D~~eI~~~v 94 (303)
T PF08538_consen 36 LLFIGGLTDGLLTVPYLPDLAEALEET-GWSLFQVQLSSSYSGWGTSSLDRDVEEIAQLV 94 (303)
T ss_dssp EEEE--TT--TT-STCHHHHHHHHT-T-T-EEEEE--GGGBTTS-S--HHHHHHHHHHHH
T ss_pred EEEECCCCCCCCCCchHHHHHHHhccC-CeEEEEEEecCccCCcCcchhhhHHHHHHHHH
Confidence 4444 3444455555566788888665 54 567788899999999999986665544
No 409
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=43.97 E-value=85 Score=22.19 Aligned_cols=30 Identities=13% Similarity=0.220 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHhCCCcEEEEecccccccCC
Q psy207 45 EDQWKQLAQLFKERPSLFVFFDSAYQGFASG 75 (109)
Q Consensus 45 ~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g 75 (109)
..|.-.|+..+..+|+ ++++||...++...
T Consensus 130 ~~qrl~laral~~~p~-llllDEPt~~LD~~ 159 (201)
T cd03231 130 QQRRVALARLLLSGRP-LWILDEPTTALDKA 159 (201)
T ss_pred HHHHHHHHHHHhcCCC-EEEEeCCCCCCCHH
Confidence 4455556666767755 89999999999754
No 410
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=43.74 E-value=96 Score=21.34 Aligned_cols=28 Identities=18% Similarity=0.227 Sum_probs=20.3
Q ss_pred HHHHHHHHHHhCCCcEEEEecccccccCC
Q psy207 47 QWKQLAQLFKERPSLFVFFDSAYQGFASG 75 (109)
Q Consensus 47 qw~~i~~~~~~~p~~~~~~D~AY~gf~~g 75 (109)
|--.|+..+..+|+ ++++||...++...
T Consensus 103 qrv~la~al~~~p~-~lllDEPt~~LD~~ 130 (173)
T cd03246 103 QRLGLARALYGNPR-ILVLDEPNSHLDVE 130 (173)
T ss_pred HHHHHHHHHhcCCC-EEEEECCccccCHH
Confidence 44455666666755 89999999998755
No 411
>PF03662 Glyco_hydro_79n: Glycosyl hydrolase family 79, N-terminal domain ; InterPro: IPR005199 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of endo-beta-N-glucuronidase, or heparanase belonging to glycoside hydrolase family 79 (GH79 from CAZY). Heparan sulphate proteoglycans (HSPGs) play a key role in the self- assembly, insolubility and barrier properties of basement membranes and extracellular matrices. Hence, cleavage of heparan sulphate (HS) affects the integrity and functional state of tissues and thereby fundamental normal and pathological phenomena involving cell migration and response to changes in the extracellular microenvironment. Heparanase degrades HS at specific intrachain sites. The enzyme is synthesized as a latent approximately 65 kDa protein that is processed at the N terminus into a highly active approximately 50 kDa form. Experimental evidence suggests that heparanase may facilitate both tumor cell invasion and neovascularization, both critical steps in cancer progression. The enzyme is also involved in cell migration associated with inflammation and autoimmunity [].; GO: 0016798 hydrolase activity, acting on glycosyl bonds, 0016020 membrane; PDB: 3VNY_A 3VO0_A 3VNZ_A.
Probab=43.51 E-value=47 Score=26.38 Aligned_cols=66 Identities=15% Similarity=0.131 Sum_probs=32.1
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCCh-hhhHHHHHHhHHhCCcEEEEechhhhhccCC
Q psy207 39 GGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDL-ERDAFAVRYFAQEGFEFLCSQSFAKNFGLYS 108 (109)
Q Consensus 39 ~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~-~~d~~~l~~~~~~~~~~~v~~SfSK~fglyg 108 (109)
+...+|.+.|++|-+++++- ++-++|...-. .|.. ..+...-..+-..+..-++-+|-||.|.+++
T Consensus 102 s~~clt~~rwd~l~~F~~~t-G~~liFgLNAL---~g~~~~~~~~~~g~WnssNA~~Ll~Yt~skgy~I~~ 168 (319)
T PF03662_consen 102 SNGCLTMSRWDELNNFAQKT-GLKLIFGLNAL---LGRRQLADRDWDGSWNSSNAQSLLKYTASKGYNIDS 168 (319)
T ss_dssp ----------HHHHHHHHHH-T-EEEEEE-TT---TS-HHHHHHHHHHHHHHH-TTTEEEEEESS-GGG--
T ss_pred cccccchhHHHHHHHHHHHh-CCEEEEEeccc---CCCCCCCCCCcCCCCChHHHHHHHHHHHHcCCCccc
Confidence 34468999999999999999 99898865421 1211 0111122234445667777999999998753
No 412
>PRK09257 aromatic amino acid aminotransferase; Provisional
Probab=43.41 E-value=36 Score=26.65 Aligned_cols=34 Identities=35% Similarity=0.670 Sum_probs=28.5
Q ss_pred ccCCccCCCChhhchhhhhcCCCCCCeeeeccCC
Q psy207 7 FSSVQQGPPIEVFAVNKAYLDDPHPKKVNLSVGG 40 (109)
Q Consensus 7 f~~v~~~p~d~~f~l~~~~~~d~~~~kv~L~~~~ 40 (109)
|+.++..++++++.+...+..+..+.+++|+.+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~ 35 (396)
T PRK09257 2 FEHLEAAPADPILGLMEAFRADPRPDKVNLGVGV 35 (396)
T ss_pred cccCCCCCCChHHHHHHHHhhCCCcCcEecceee
Confidence 7888999999999988888877777899996663
No 413
>PTZ00376 aspartate aminotransferase; Provisional
Probab=43.35 E-value=28 Score=27.41 Aligned_cols=36 Identities=44% Similarity=0.789 Sum_probs=29.0
Q ss_pred ccccCCccCCCChhhchhhhhcCCCCCCeeeeccCC
Q psy207 5 SSFSSVQQGPPIEVFAVNKAYLDDPHPKKVNLSVGG 40 (109)
Q Consensus 5 s~f~~v~~~p~d~~f~l~~~~~~d~~~~kv~L~~~~ 40 (109)
|.|++++..++++++++.+..+.+..+++++|+.+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~ 38 (404)
T PTZ00376 3 SLFSQVPLGPPDPILGLAAAFKADPSPSKVNLGIGA 38 (404)
T ss_pred hhhhcCCcCCCChHHHHHHHHhhcCCcccEecccce
Confidence 458999998999998988887766667889996664
No 414
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=43.34 E-value=73 Score=22.75 Aligned_cols=34 Identities=15% Similarity=0.192 Sum_probs=23.4
Q ss_pred CCCCHHHHHHHHHHHHhCCCcEEEEecccccccCC
Q psy207 41 CDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASG 75 (109)
Q Consensus 41 ~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g 75 (109)
..-...|.-.|+..+-.+|+ ++++||...++...
T Consensus 150 LS~G~~qrl~laral~~~p~-llllDEPt~~LD~~ 183 (224)
T TIGR02324 150 FSGGEQQRVNIARGFIADYP-ILLLDEPTASLDAA 183 (224)
T ss_pred CCHHHHHHHHHHHHHhcCCC-EEEEcCCcccCCHH
Confidence 33344555566666667755 89999999998654
No 415
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=43.17 E-value=90 Score=22.56 Aligned_cols=30 Identities=13% Similarity=0.287 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHhCCCcEEEEecccccccCC
Q psy207 45 EDQWKQLAQLFKERPSLFVFFDSAYQGFASG 75 (109)
Q Consensus 45 ~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g 75 (109)
.-|.-.|+..+..+|. ++++||.+-|+...
T Consensus 135 ~~qrl~laral~~~p~-llllDEP~~gLD~~ 164 (232)
T cd03300 135 QQQRVAIARALVNEPK-VLLLDEPLGALDLK 164 (232)
T ss_pred HHHHHHHHHHHhcCCC-EEEEcCCcccCCHH
Confidence 3444555777777855 89999999999754
No 416
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=43.17 E-value=99 Score=21.38 Aligned_cols=32 Identities=16% Similarity=0.191 Sum_probs=21.8
Q ss_pred CCHHHH--HHHHHHHHhCCCcEEEEecccccccCC
Q psy207 43 PTEDQW--KQLAQLFKERPSLFVFFDSAYQGFASG 75 (109)
Q Consensus 43 lt~eqw--~~i~~~~~~~p~~~~~~D~AY~gf~~g 75 (109)
++.-|. -.|+..+..+|+ ++++||...|+...
T Consensus 101 lS~G~~qr~~la~al~~~p~-llilDEP~~~LD~~ 134 (178)
T cd03229 101 LSGGQQQRVALARALAMDPD-VLLLDEPTSALDPI 134 (178)
T ss_pred CCHHHHHHHHHHHHHHCCCC-EEEEeCCcccCCHH
Confidence 444443 345666667755 88999999999654
No 417
>PF05889 SLA_LP_auto_ag: Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen); InterPro: IPR008829 This family consists of several eukaryotic and archaeal proteins which are related to the Homo sapiens soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen). Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis []. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway []. The archaeal sequences Q8TXK0 from SWISSPROT and Q8TYR3 from SWISSPROT are annotated as being pyridoxal phosphate-dependent enzymes.; GO: 0016740 transferase activity; PDB: 2E7J_B 2E7I_B 2Z67_C 3HL2_D 3BC8_A 3BCA_A 3BCB_A.
Probab=43.12 E-value=59 Score=26.63 Aligned_cols=61 Identities=21% Similarity=0.257 Sum_probs=35.5
Q ss_pred ccCCCCCC-HHHHHHHHHHHHhCCCcEEEEecccccccCCChhhh--HHHHHHhHHhCCcEEEEechhhhh
Q psy207 37 SVGGCDPT-EDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERD--AFAVRYFAQEGFEFLCSQSFAKNF 104 (109)
Q Consensus 37 ~~~~~~lt-~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d--~~~l~~~~~~~~~~~v~~SfSK~f 104 (109)
.+++.-+. +++.++|+++++++ ++--++--||- ++.. ...+......+.-=++.||.-|||
T Consensus 162 ttscfapr~~D~i~~IakiC~~~-~IPhlvNnAYg------vQ~~~~~~~i~~a~~~GRvda~vqS~dkNF 225 (389)
T PF05889_consen 162 TTSCFAPRLPDDIEEIAKICKEY-DIPHLVNNAYG------VQSSKCMHLIQQAWRVGRVDAFVQSTDKNF 225 (389)
T ss_dssp ESSTTTTB----HHHHHHHHHHH-T--EEEEGTTT------TT-HHHHHHHHHHHHHSTCSEEEEEHHHHH
T ss_pred ecCccCCCCCccHHHHHHHHHHc-CCceEEccchh------hhHHHHHHHHHHHHhcCCcceeeeecCCCE
Confidence 34444443 44599999999999 98889999984 2211 112222223443335799999998
No 418
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=43.02 E-value=74 Score=25.13 Aligned_cols=46 Identities=17% Similarity=0.237 Sum_probs=34.8
Q ss_pred hhhcCCCCCCeeeecc-CCCCCCHHHHHHHHHHHHhCCC----cEEEEecc
Q psy207 23 KAYLDDPHPKKVNLSV-GGCDPTEDQWKQLAQLFKERPS----LFVFFDSA 68 (109)
Q Consensus 23 ~~~~~d~~~~kv~L~~-~~~~lt~eqw~~i~~~~~~~p~----~~~~~D~A 68 (109)
..+.+..+|+...+.| .|..+.-||.+++.+.+..+|. =++|+|+|
T Consensus 66 ~~~~~g~HPD~~~i~p~~~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a 116 (325)
T PRK06871 66 HLFQAGNHPDFHILEPIDNKDIGVDQVREINEKVSQHAQQGGNKVVYIQGA 116 (325)
T ss_pred HHHhcCCCCCEEEEccccCCCCCHHHHHHHHHHHhhccccCCceEEEEech
Confidence 3455677888888877 6788999999999998876532 27777766
No 419
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=42.84 E-value=94 Score=21.91 Aligned_cols=29 Identities=24% Similarity=0.423 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHhCCCcEEEEecccccccCC
Q psy207 46 DQWKQLAQLFKERPSLFVFFDSAYQGFASG 75 (109)
Q Consensus 46 eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g 75 (109)
-|.-.|+..+..+|. ++++||...++...
T Consensus 117 ~qrv~laral~~~p~-illlDEP~~~LD~~ 145 (194)
T cd03213 117 RKRVSIALELVSNPS-LLFLDEPTSGLDSS 145 (194)
T ss_pred HHHHHHHHHHHcCCC-EEEEeCCCcCCCHH
Confidence 334445666666755 89999999988654
No 420
>PRK14465 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=42.66 E-value=91 Score=24.88 Aligned_cols=83 Identities=11% Similarity=0.201 Sum_probs=49.1
Q ss_pred ChhhchhhhhcCCCCCCeeee---ccCCCCCCHHHHHHHHHHHHhC---CCcEEEEecccccccCCChhhhHHHHHHhHH
Q psy207 16 IEVFAVNKAYLDDPHPKKVNL---SVGGCDPTEDQWKQLAQLFKER---PSLFVFFDSAYQGFASGDLERDAFAVRYFAQ 89 (109)
Q Consensus 16 d~~f~l~~~~~~d~~~~kv~L---~~~~~~lt~eqw~~i~~~~~~~---p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~ 89 (109)
+.++.....|.+.. .++|-+ =..|..-+.|+.++++++++.. .+++|+-.. |.+|..-+.++=....+.+.+
T Consensus 239 e~ll~al~~~~~~~-~r~v~ieyvLI~GvNDs~eda~~L~~ll~~l~~kVnLIPyN~~-~~~~~~ps~e~i~~F~~~L~~ 316 (342)
T PRK14465 239 EELLQAAKDFTREL-KRRITFEYVMIPGVNMGRENANKLVKIARSLDCKINVIPLNTE-FFGWRRPTDDEVAEFIMLLEP 316 (342)
T ss_pred HHHHHHHHHHHHHc-CCEEEEEEEEECCccCCHHHHHHHHHHHhhCCCcEEEEccCCC-CCCCCCCCHHHHHHHHHHHHH
Confidence 44555556665533 345444 3457778999999999999973 345666663 556654432222233344555
Q ss_pred hCCcEEEEech
Q psy207 90 EGFEFLCSQSF 100 (109)
Q Consensus 90 ~~~~~~v~~Sf 100 (109)
.+..+.+=+|.
T Consensus 317 ~Gi~v~~R~~~ 327 (342)
T PRK14465 317 AGVPILNRRSP 327 (342)
T ss_pred CCCeEEEeCCC
Confidence 67777766554
No 421
>TIGR02530 flg_new flagellar operon protein. Members of this family are found in a subset of bacterial flagellar operons, generally between genes designated flgD and flgE, in species as diverse as Bacillus halodurans and various other Firmicutes, Geobacter sulfurreducens, and Bdellovibrio bacteriovorus. The specific molecular function is unknown.
Probab=42.56 E-value=52 Score=21.73 Aligned_cols=21 Identities=24% Similarity=0.427 Sum_probs=17.6
Q ss_pred ccCCCCCCHHHHHHHHHHHHh
Q psy207 37 SVGGCDPTEDQWKQLAQLFKE 57 (109)
Q Consensus 37 ~~~~~~lt~eqw~~i~~~~~~ 57 (109)
.-.|..++.+||++|-+-+.+
T Consensus 26 ~~R~I~l~~~~~~~i~~av~~ 46 (96)
T TIGR02530 26 RERNISINPDDWKKLLEAVEE 46 (96)
T ss_pred HHcCCCCCHHHHHHHHHHHHH
Confidence 566788999999999887765
No 422
>KOG1402|consensus
Probab=42.45 E-value=34 Score=27.96 Aligned_cols=51 Identities=18% Similarity=0.293 Sum_probs=38.3
Q ss_pred hhhcCCCCCCeeee-----ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccC
Q psy207 23 KAYLDDPHPKKVNL-----SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFAS 74 (109)
Q Consensus 23 ~~~~~d~~~~kv~L-----~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~ 74 (109)
+.+..+++-...-+ --|...+++--++++-++|+++ +++.|.||.--|++.
T Consensus 200 e~~l~~~~vaaFivEPIQGEaGVvvP~~GYL~~vreLCtky-nvl~I~DEvQTGl~R 255 (427)
T KOG1402|consen 200 EVALKSPNVAAFIVEPIQGEAGVVVPPPGYLKKVRELCTKY-NVLLIADEVQTGLAR 255 (427)
T ss_pred HHHhcCCCeeEEEeeccccccceEeCCchhHHHHHHHHHhh-cEEEEehhhhhcccc
Confidence 44555544433333 3345578888999999999999 999999999999985
No 423
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=42.32 E-value=80 Score=22.37 Aligned_cols=31 Identities=19% Similarity=0.425 Sum_probs=21.5
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEecccccccCC
Q psy207 44 TEDQWKQLAQLFKERPSLFVFFDSAYQGFASG 75 (109)
Q Consensus 44 t~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g 75 (109)
..-|.-.|+..+..+|+ ++++||...++...
T Consensus 136 G~~qrv~la~al~~~p~-llllDEPt~~LD~~ 166 (213)
T cd03235 136 GQQQRVLLARALVQDPD-LLLLDEPFAGVDPK 166 (213)
T ss_pred HHHHHHHHHHHHHcCCC-EEEEeCCcccCCHH
Confidence 34445556666666756 88999999988644
No 424
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=42.16 E-value=73 Score=22.98 Aligned_cols=34 Identities=21% Similarity=0.369 Sum_probs=23.7
Q ss_pred CCCCHHHHHHHHHHHHhCCCcEEEEecccccccCC
Q psy207 41 CDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASG 75 (109)
Q Consensus 41 ~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g 75 (109)
..-..-|.-.|+..+..+|+ ++++||...++...
T Consensus 114 LS~G~~qrv~laral~~~p~-llilDEP~~~LD~~ 147 (223)
T TIGR03771 114 LSGGQRQRVLVARALATRPS-VLLLDEPFTGLDMP 147 (223)
T ss_pred CCHHHHHHHHHHHHHhcCCC-EEEEeCCcccCCHH
Confidence 33344455567777777755 99999999998654
No 425
>PRK09057 coproporphyrinogen III oxidase; Provisional
Probab=42.05 E-value=92 Score=24.71 Aligned_cols=67 Identities=9% Similarity=-0.009 Sum_probs=39.5
Q ss_pred CCCeeee-ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecc--cccccCCChhhhHHHHHHhHHhCCcEE--EEechh
Q psy207 30 HPKKVNL-SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSA--YQGFASGDLERDAFAVRYFAQEGFEFL--CSQSFA 101 (109)
Q Consensus 30 ~~~kv~L-~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~A--Y~gf~~g~~~~d~~~l~~~~~~~~~~~--v~~SfS 101 (109)
..+.|.+ +-|.+.++++++++|++.++++ +++.+.+ -..-..+++.. .-++.+.+.+.+-+ =+|||+
T Consensus 55 ~i~tiy~GGGTPs~l~~~~L~~ll~~i~~~---f~~~~~~eit~E~~P~~i~~--e~L~~l~~~GvnrislGvQS~~ 126 (380)
T PRK09057 55 TLTSIFFGGGTPSLMQPETVAALLDAIARL---WPVADDIEITLEANPTSVEA--GRFRGYRAAGVNRVSLGVQALN 126 (380)
T ss_pred CcCeEEeCCCccccCCHHHHHHHHHHHHHh---CCCCCCccEEEEECcCcCCH--HHHHHHHHcCCCEEEEecccCC
Confidence 4567888 5666789999999999999776 4444422 22222333332 24555555554432 246664
No 426
>PRK12313 glycogen branching enzyme; Provisional
Probab=42.04 E-value=41 Score=28.69 Aligned_cols=31 Identities=16% Similarity=0.242 Sum_probs=27.7
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEecccccccCC
Q psy207 44 TEDQWKQLAQLFKERPSLFVFFDSAYQGFASG 75 (109)
Q Consensus 44 t~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g 75 (109)
|+++++++++.+.++ ++-||+|..|-.++.+
T Consensus 218 t~~d~k~lv~~~H~~-Gi~VilD~V~nH~~~~ 248 (633)
T PRK12313 218 TPEDFMYLVDALHQN-GIGVILDWVPGHFPKD 248 (633)
T ss_pred CHHHHHHHHHHHHHC-CCEEEEEECCCCCCCC
Confidence 589999999999999 9999999999877643
No 427
>KOG1368|consensus
Probab=42.01 E-value=35 Score=27.56 Aligned_cols=38 Identities=24% Similarity=0.295 Sum_probs=32.0
Q ss_pred CCCeeee-----ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecc
Q psy207 30 HPKKVNL-----SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSA 68 (109)
Q Consensus 30 ~~~kv~L-----~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~A 68 (109)
.++.|+| |-||..++-|+++++.++++++ ++-+-.|-|
T Consensus 154 ~T~LIclENT~~~~Gg~vlPle~~~~v~~lak~~-glkLH~DGA 196 (384)
T KOG1368|consen 154 PTKLICLENTHNNCGGKVLPLEELDRVKALAKRH-GLKLHMDGA 196 (384)
T ss_pred CceEEEeeccccccCceEeeHHHHHHHHHHHhcc-CCeeecchh
Confidence 4578888 5567999999999999999999 987777755
No 428
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=41.97 E-value=82 Score=22.13 Aligned_cols=33 Identities=24% Similarity=0.428 Sum_probs=21.7
Q ss_pred CCCHHHHH--HHHHHHHhCCCcEEEEecccccccCC
Q psy207 42 DPTEDQWK--QLAQLFKERPSLFVFFDSAYQGFASG 75 (109)
Q Consensus 42 ~lt~eqw~--~i~~~~~~~p~~~~~~D~AY~gf~~g 75 (109)
.++.-|.+ .|+..+..+|. ++++||...++...
T Consensus 108 ~LSgGe~qrv~la~al~~~p~-vlllDEP~~~LD~~ 142 (192)
T cd03232 108 GLSVEQRKRLTIGVELAAKPS-ILFLDEPTSGLDSQ 142 (192)
T ss_pred cCCHHHhHHHHHHHHHhcCCc-EEEEeCCCcCCCHH
Confidence 34444433 34666666755 89999999998644
No 429
>COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism]
Probab=41.96 E-value=46 Score=27.63 Aligned_cols=37 Identities=24% Similarity=0.440 Sum_probs=31.4
Q ss_pred ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccC
Q psy207 37 SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFAS 74 (109)
Q Consensus 37 ~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~ 74 (109)
|-+-..+.++-++.|.++++++ +.++|+||.=-||--
T Consensus 212 n~g~i~p~~~Fl~~Lr~lt~e~-G~lLI~DEViTGFR~ 248 (432)
T COG0001 212 NMGVVPPEPGFLEGLRELTEEH-GALLIFDEVITGFRV 248 (432)
T ss_pred CCCCCCCCHHHHHHHHHHHHHc-CcEEEEecchhhccc
Confidence 5555588899999999999999 999999999777653
No 430
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=41.94 E-value=77 Score=22.07 Aligned_cols=40 Identities=25% Similarity=0.392 Sum_probs=29.5
Q ss_pred CCCCeeeeccCCCCCCHHHHHHHHHHHHhCC----CcEEEEecc
Q psy207 29 PHPKKVNLSVGGCDPTEDQWKQLAQLFKERP----SLFVFFDSA 68 (109)
Q Consensus 29 ~~~~kv~L~~~~~~lt~eqw~~i~~~~~~~p----~~~~~~D~A 68 (109)
.++.-..+.+.+...+.++++++.+.+...| .-++|+|++
T Consensus 62 ~~~d~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~kviiide~ 105 (188)
T TIGR00678 62 NHPDLHRLEPEGQSIKVDQVRELVEFLSRTPQESGRRVVIIEDA 105 (188)
T ss_pred CCCcEEEeccccCcCCHHHHHHHHHHHccCcccCCeEEEEEech
Confidence 3444566677777889999999999887642 238899997
No 431
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=41.88 E-value=28 Score=26.57 Aligned_cols=46 Identities=20% Similarity=0.490 Sum_probs=32.5
Q ss_pred CCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhH
Q psy207 42 DPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFA 88 (109)
Q Consensus 42 ~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~ 88 (109)
.-...||-+|.=++...|. ++++||.-.|+....-++.+..+..++
T Consensus 149 SHGqKQwLEIGMll~Q~P~-lLLlDEPvAGMTd~Et~~taeLl~~la 194 (249)
T COG4674 149 SHGQKQWLEIGMLLAQDPK-LLLLDEPVAGMTDAETEKTAELLKSLA 194 (249)
T ss_pred ccchhhhhhhheeeccCCc-EEEecCccCCCcHHHHHHHHHHHHHHh
Confidence 4457889999888888855 888999999998654334444444443
No 432
>PRK02769 histidine decarboxylase; Provisional
Probab=41.82 E-value=54 Score=26.18 Aligned_cols=34 Identities=18% Similarity=0.386 Sum_probs=25.2
Q ss_pred ccCCCCCCHHHHHHHHHHHHhCCC---cEEEEecccccccC
Q psy207 37 SVGGCDPTEDQWKQLAQLFKERPS---LFVFFDSAYQGFAS 74 (109)
Q Consensus 37 ~~~~~~lt~eqw~~i~~~~~~~p~---~~~~~D~AY~gf~~ 74 (109)
+++|..-+ +++|+++++++ + +++.+|-||-++.-
T Consensus 171 t~tG~idp---i~~I~~i~~~~-g~~~~~lHVDaA~gg~~~ 207 (380)
T PRK02769 171 TMTGAIDN---IKEIQEILKKI-GIDDYYIHADAALSGMIL 207 (380)
T ss_pred CCCcccCC---HHHHHHHHHHh-CCCceEEEEEecccceee
Confidence 67776655 45666777788 6 69999999988654
No 433
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=41.67 E-value=85 Score=22.75 Aligned_cols=31 Identities=16% Similarity=0.304 Sum_probs=22.7
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEecccccccCC
Q psy207 44 TEDQWKQLAQLFKERPSLFVFFDSAYQGFASG 75 (109)
Q Consensus 44 t~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g 75 (109)
..-|.-.|+..+..+|+ ++++||...++...
T Consensus 149 G~~qrv~laral~~~p~-illLDEPt~~LD~~ 179 (248)
T PRK09580 149 GEKKRNDILQMAVLEPE-LCILDESDSGLDID 179 (248)
T ss_pred HHHHHHHHHHHHHcCCC-EEEEeCCCccCCHH
Confidence 34555666777777866 88889999988654
No 434
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=41.62 E-value=94 Score=21.90 Aligned_cols=30 Identities=10% Similarity=0.202 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHhCCCcEEEEecccccccCC
Q psy207 45 EDQWKQLAQLFKERPSLFVFFDSAYQGFASG 75 (109)
Q Consensus 45 ~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g 75 (109)
..|.-.|+..+..+|+ ++++||...++...
T Consensus 132 ~~~rv~laral~~~p~-~lilDEP~~~LD~~ 161 (200)
T PRK13540 132 QKRQVALLRLWMSKAK-LWLLDEPLVALDEL 161 (200)
T ss_pred HHHHHHHHHHHhcCCC-EEEEeCCCcccCHH
Confidence 3444455666666765 88999999999644
No 435
>PRK10908 cell division protein FtsE; Provisional
Probab=41.61 E-value=97 Score=22.13 Aligned_cols=31 Identities=16% Similarity=0.271 Sum_probs=22.2
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEecccccccCC
Q psy207 44 TEDQWKQLAQLFKERPSLFVFFDSAYQGFASG 75 (109)
Q Consensus 44 t~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g 75 (109)
..-|.-.|+..+..+|+ ++++||...++...
T Consensus 141 G~~qrv~laral~~~p~-llllDEPt~~LD~~ 171 (222)
T PRK10908 141 GEQQRVGIARAVVNKPA-VLLADEPTGNLDDA 171 (222)
T ss_pred HHHHHHHHHHHHHcCCC-EEEEeCCCCcCCHH
Confidence 34555556666666766 89999999998654
No 436
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=41.29 E-value=99 Score=21.47 Aligned_cols=32 Identities=19% Similarity=0.361 Sum_probs=21.2
Q ss_pred CCHHHHH--HHHHHHHhCCCcEEEEecccccccCC
Q psy207 43 PTEDQWK--QLAQLFKERPSLFVFFDSAYQGFASG 75 (109)
Q Consensus 43 lt~eqw~--~i~~~~~~~p~~~~~~D~AY~gf~~g 75 (109)
++.-|.+ .|+..+-.+|. ++++||...++...
T Consensus 105 LS~G~~qrl~la~al~~~p~-llllDEP~~~LD~~ 138 (182)
T cd03215 105 LSGGNQQKVVLARWLARDPR-VLILDEPTRGVDVG 138 (182)
T ss_pred cCHHHHHHHHHHHHHccCCC-EEEECCCCcCCCHH
Confidence 4444433 35555556755 89999999999654
No 437
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=41.29 E-value=1e+02 Score=21.65 Aligned_cols=30 Identities=17% Similarity=0.309 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHhCCCcEEEEecccccccCC
Q psy207 45 EDQWKQLAQLFKERPSLFVFFDSAYQGFASG 75 (109)
Q Consensus 45 ~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g 75 (109)
..|.-.|+..+..+|+ ++++||...++...
T Consensus 132 ~~qrv~la~al~~~p~-llllDEPt~~LD~~ 161 (198)
T TIGR01189 132 QQRRLALARLWLSRAP-LWILDEPTTALDKA 161 (198)
T ss_pred HHHHHHHHHHHhcCCC-EEEEeCCCcCCCHH
Confidence 3344445555556755 99999999999654
No 438
>PLN03244 alpha-amylase; Provisional
Probab=41.28 E-value=41 Score=30.26 Aligned_cols=38 Identities=24% Similarity=0.229 Sum_probs=32.0
Q ss_pred ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCC
Q psy207 37 SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASG 75 (109)
Q Consensus 37 ~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g 75 (109)
.|+..-=|+++++++++.+.++ ++-||+|..|-.++.+
T Consensus 432 ApssRYGTPeDLK~LVD~aH~~-GI~VILDvV~NH~~~d 469 (872)
T PLN03244 432 AASSRYGTPDDFKRLVDEAHGL-GLLVFLDIVHSYAAAD 469 (872)
T ss_pred ccCcccCCHHHHHHHHHHHHHC-CCEEEEEecCccCCCc
Confidence 4445555799999999999999 9999999999877754
No 439
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=41.17 E-value=92 Score=22.08 Aligned_cols=30 Identities=17% Similarity=0.245 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHhCCCcEEEEecccccccCC
Q psy207 45 EDQWKQLAQLFKERPSLFVFFDSAYQGFASG 75 (109)
Q Consensus 45 ~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g 75 (109)
..|.-.|+..+..+|. ++++||...++...
T Consensus 141 ~~qrv~laral~~~p~-illlDEPt~~LD~~ 170 (218)
T cd03266 141 MRQKVAIARALVHDPP-VLLLDEPTTGLDVM 170 (218)
T ss_pred HHHHHHHHHHHhcCCC-EEEEcCCCcCCCHH
Confidence 3344455666666755 89999999999754
No 440
>PTZ00344 pyridoxal kinase; Provisional
Probab=41.17 E-value=53 Score=24.99 Aligned_cols=48 Identities=15% Similarity=0.195 Sum_probs=31.7
Q ss_pred chhhhhcCCCCCCeeeeccCCCCCCHHHHHHHHHHHHh---C-CCcEEEEec
Q psy207 20 AVNKAYLDDPHPKKVNLSVGGCDPTEDQWKQLAQLFKE---R-PSLFVFFDS 67 (109)
Q Consensus 20 ~l~~~~~~d~~~~kv~L~~~~~~lt~eqw~~i~~~~~~---~-p~~~~~~D~ 67 (109)
.+.+.+.........+.-.+|+..+.++.+.+++.+++ + |+..+++|-
T Consensus 64 ~~l~~l~~~~~~~~~~~v~sG~l~~~~~~~~i~~~l~~~~~~~~~~~vv~DP 115 (296)
T PTZ00344 64 TLMDGLRANNLLSDYTYVLTGYINSADILREVLATVKEIKELRPKLIFLCDP 115 (296)
T ss_pred HHHHHHHhcCCcccCCEEEECCCCCHHHHHHHHHHHHHHHHhCCCceEEECC
Confidence 44455544222334566778888899999999999963 3 235788893
No 441
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=40.94 E-value=1.1e+02 Score=20.30 Aligned_cols=42 Identities=19% Similarity=0.376 Sum_probs=30.9
Q ss_pred CCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhH
Q psy207 42 DPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFA 88 (109)
Q Consensus 42 ~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~ 88 (109)
.+..+.++++++-+.+. +..+++ .||..|++.+....++.+.
T Consensus 7 SMP~~~L~~l~~~a~~~-~~~~V~----RG~~~g~~~~t~~~~~~l~ 48 (113)
T PF09673_consen 7 SMPDASLRNLLKQAERA-GVVVVF----RGFPDGSFKPTAKAIQELL 48 (113)
T ss_pred CCCHHHHHHHHHHHHhC-CcEEEE----ECCCCCCHHHHHHHHHHHh
Confidence 56788888888888888 877777 7888777766665555544
No 442
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=40.85 E-value=59 Score=22.56 Aligned_cols=46 Identities=17% Similarity=0.241 Sum_probs=34.3
Q ss_pred hhcCCCCCCeeeeccCCC--CCCHHHHHHHHHHHHhCCCc----EEEEeccc
Q psy207 24 AYLDDPHPKKVNLSVGGC--DPTEDQWKQLAQLFKERPSL----FVFFDSAY 69 (109)
Q Consensus 24 ~~~~d~~~~kv~L~~~~~--~lt~eqw~~i~~~~~~~p~~----~~~~D~AY 69 (109)
......+++...+++.+. .+..+|++++.+.+...|.. ++++|+|=
T Consensus 61 ~~~~~~~~d~~~~~~~~~~~~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad 112 (162)
T PF13177_consen 61 RIEEGNHPDFIIIKPDKKKKSIKIDQIREIIEFLSLSPSEGKYKVIIIDEAD 112 (162)
T ss_dssp HHHTT-CTTEEEEETTTSSSSBSHHHHHHHHHHCTSS-TTSSSEEEEEETGG
T ss_pred HHHhccCcceEEEecccccchhhHHHHHHHHHHHHHHHhcCCceEEEeehHh
Confidence 444567888888888888 89999999999988764332 78887763
No 443
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=40.36 E-value=91 Score=22.13 Aligned_cols=30 Identities=20% Similarity=0.212 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHhC--CCcEEEEecccccccCC
Q psy207 45 EDQWKQLAQLFKER--PSLFVFFDSAYQGFASG 75 (109)
Q Consensus 45 ~eqw~~i~~~~~~~--p~~~~~~D~AY~gf~~g 75 (109)
.-|.-.|+..+..+ |. ++++||...++...
T Consensus 92 q~qrl~laral~~~~~p~-llLlDEPt~~LD~~ 123 (176)
T cd03238 92 ELQRVKLASELFSEPPGT-LFILDEPSTGLHQQ 123 (176)
T ss_pred HHHHHHHHHHHhhCCCCC-EEEEeCCcccCCHH
Confidence 34444556666667 67 88889999988644
No 444
>PF00694 Aconitase_C: Aconitase C-terminal domain CAUTION: The Prosite patterns do not match this domain.; InterPro: IPR000573 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. 3-isopropylmalate dehydratase (or isopropylmalate isomerase; 4.2.1.33 from EC) catalyses the stereo-specific isomerisation of 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate. This enzyme performs the second step in the biosynthesis of leucine, and is present in most prokaryotes and many fungal species. The prokaryotic enzyme is a heterodimer composed of a large (LeuC) and small (LeuD) subunit, while the fungal form is a monomeric enzyme. Both forms of isopropylmalate are related and are part of the larger aconitase family []. Aconitases are mostly monomeric proteins which share four domains in common and contain a single, labile [4Fe-4S] cluster. Three structural domains (1, 2 and 3) are tightly packed around the iron-sulphur cluster, while a fourth domain (4) forms a deep active-site cleft. The prokaryotic enzyme is encoded by two adjacent genes, leuC and leuD, corresponding to aconitase domains 1-3 and 4 respectively [, ]. LeuC does not bind an iron-sulphur cluster. It is thought that some prokaryotic isopropylamalate dehydrogenases can also function as homoaconitase 4.2.1.36 from EC, converting cis-homoaconitate to homoisocitric acid in lysine biosynthesis []. Homoaconitase has been identified in higher fungi (mitochondria) and several archaea and one thermophilic species of bacteria, Thermus thermophilus []. This entry represents the 'swivel' domain found at the C-terminal of eukaryotic mAcn, cAcn/IPR1 and IRP2, and bacterial AcnA. This domain has a three layer beta/beta/alpha structure, and in cytosolic Acn is known to rotate between the cAcn and IRP1 forms of the enzyme. This domain is also found in the small subunit of isopropylmalate dehydratase (LeuD). More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0008152 metabolic process; PDB: 2PKP_A 2B3Y_A 2B3X_A 1V7L_B 1C97_A 1NIT_A 8ACN_A 1C96_A 1ACO_A 1NIS_A ....
Probab=40.33 E-value=31 Score=23.91 Aligned_cols=31 Identities=32% Similarity=0.597 Sum_probs=19.6
Q ss_pred cccCCC-hhhhHHHHHHhHHhCCcEEEEechhhhh
Q psy207 71 GFASGD-LERDAFAVRYFAQEGFEFLCSQSFAKNF 104 (109)
Q Consensus 71 gf~~g~-~~~d~~~l~~~~~~~~~~~v~~SfSK~f 104 (109)
.|+.|+ -|..+|+++ ..+...+++.||++.|
T Consensus 83 nfG~GSSRE~A~~al~---~~Gi~aVIA~SFa~If 114 (131)
T PF00694_consen 83 NFGCGSSREHAAWALK---DLGIRAVIAESFARIF 114 (131)
T ss_dssp SBTBSS--THHHHHHH---HTTEEEEEESSB-HHH
T ss_pred cccCCcchHHHHHHHH---HhCCeEEEechHHHHH
Confidence 445553 233445543 5789999999999876
No 445
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=40.30 E-value=1.4e+02 Score=21.99 Aligned_cols=45 Identities=20% Similarity=0.319 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHhC-CCcEEEEecccccccCCChhhhHHH-HHHhHHh
Q psy207 46 DQWKQLAQLFKER-PSLFVFFDSAYQGFASGDLERDAFA-VRYFAQE 90 (109)
Q Consensus 46 eqw~~i~~~~~~~-p~~~~~~D~AY~gf~~g~~~~d~~~-l~~~~~~ 90 (109)
.|.+++..+++.. ++-++++||.-.|....+...=+++ ++.+.+.
T Consensus 95 ~e~~~~~~il~~~~~~sLvLlDE~~~Gt~~~dg~~la~ail~~L~~~ 141 (218)
T cd03286 95 VELSETANILRHATPDSLVILDELGRGTSTHDGYAIAHAVLEYLVKK 141 (218)
T ss_pred HHHHHHHHHHHhCCCCeEEEEecccCCCCchHHHHHHHHHHHHHHHh
Confidence 5666666666641 1459999998888876653333344 5556543
No 446
>cd01020 TroA_b Metal binding protein TroA_b. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=40.21 E-value=52 Score=24.69 Aligned_cols=33 Identities=12% Similarity=0.206 Sum_probs=26.9
Q ss_pred ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccc
Q psy207 37 SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQ 70 (109)
Q Consensus 37 ~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~ 70 (109)
++++..+++.++++|.+.++++ ++-.|+-+...
T Consensus 184 ~~~~~~ps~~~l~~l~~~ik~~-~v~~if~e~~~ 216 (264)
T cd01020 184 TESETEPSPADIAAFQNAIKNR-QIDALIVNPQQ 216 (264)
T ss_pred hcCCCCCCHHHHHHHHHHHHhC-CCCEEEeCCCC
Confidence 3568899999999999999999 88777755543
No 447
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=39.70 E-value=1e+02 Score=21.87 Aligned_cols=37 Identities=14% Similarity=0.156 Sum_probs=25.0
Q ss_pred cCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCC
Q psy207 38 VGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASG 75 (109)
Q Consensus 38 ~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g 75 (109)
|....-..-|.-.|+..+..+|+ ++++||...++...
T Consensus 136 ~~~LSgG~~qrv~laral~~~p~-llllDEPt~~LD~~ 172 (216)
T TIGR00960 136 PMQLSGGEQQRVAIARAIVHKPP-LLLADEPTGNLDPE 172 (216)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCC-EEEEeCCCCcCCHH
Confidence 33333345555666777777755 89999999988654
No 448
>PF08543 Phos_pyr_kin: Phosphomethylpyrimidine kinase; InterPro: IPR013749 This enzyme 2.7.4.7 from EC is part of the Thiamine pyrophosphate (TPP) synthesis pathway, TPP is an essential cofactor for many enzymes []. ; PDB: 2DDW_B 2DDO_B 2DDM_A 3IBQ_A 3H74_A 3HYO_A 1UB0_A 1VI9_D 1TD2_B 2PHP_D ....
Probab=39.70 E-value=44 Score=24.76 Aligned_cols=57 Identities=18% Similarity=0.131 Sum_probs=32.8
Q ss_pred CccCCCChhhchhhhhcCCCCCCeeeeccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccc
Q psy207 10 VQQGPPIEVFAVNKAYLDDPHPKKVNLSVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQ 70 (109)
Q Consensus 10 v~~~p~d~~f~l~~~~~~d~~~~kv~L~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~ 70 (109)
+...+++-+-...+....+..+ +.--+|+..+.+|.+.|++++++. +..+++|-.--
T Consensus 40 ~~~~~~~~~~~ql~~~~~~~~~---~aikiG~l~~~~~v~~i~~~l~~~-~~~vV~DPVm~ 96 (246)
T PF08543_consen 40 IEPVDSEMIKAQLDALLEDMKF---DAIKIGYLGSAEQVEIIADFLKKP-KIPVVLDPVMG 96 (246)
T ss_dssp EEE--HHHHHHHHHHHHHTSC----SEEEE-S-SSHHHHHHHHHHHHHT-TTEEEEE---E
T ss_pred EEECCHHHHHHHHHHhcccccc---cEEEEcccCCchhhhhHHHHHhcc-CCCEEEecccc
Confidence 3333444333334555554443 444568888999999999999765 88999998754
No 449
>TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase. This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent).
Probab=39.43 E-value=27 Score=29.26 Aligned_cols=28 Identities=21% Similarity=0.334 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHhCCCcEEEEeccccccc
Q psy207 45 EDQWKQLAQLFKERPSLFVFFDSAYQGFA 73 (109)
Q Consensus 45 ~eqw~~i~~~~~~~p~~~~~~D~AY~gf~ 73 (109)
-+.+++|+++++++ ++++.+|-||-|..
T Consensus 281 iDpl~eIa~i~~~~-g~~lHVDaA~gg~~ 308 (522)
T TIGR03799 281 IDPLDEMADIAQEL-GCHFHVDAAWGGAT 308 (522)
T ss_pred cCCHHHHHHHHHHc-CCeEEEEchhhhHH
Confidence 34477888888899 99999999988654
No 450
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=39.40 E-value=1.2e+02 Score=21.35 Aligned_cols=37 Identities=14% Similarity=0.172 Sum_probs=25.6
Q ss_pred cCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCC
Q psy207 38 VGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASG 75 (109)
Q Consensus 38 ~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g 75 (109)
|....-..-|.-.|+..+..+|+ +++.||...++...
T Consensus 134 ~~~LS~G~~qrv~laral~~~p~-llllDEPt~~LD~~ 170 (214)
T cd03292 134 PAELSGGEQQRVAIARAIVNSPT-ILIADEPTGNLDPD 170 (214)
T ss_pred hhhcCHHHHHHHHHHHHHHcCCC-EEEEeCCCCcCCHH
Confidence 33334445556666777777866 89999999988654
No 451
>PHA00684 hypothetical protein
Probab=39.40 E-value=85 Score=21.82 Aligned_cols=50 Identities=16% Similarity=0.207 Sum_probs=34.3
Q ss_pred HHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEech
Q psy207 48 WKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSF 100 (109)
Q Consensus 48 w~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~Sf 100 (109)
.+++++..++||+.-.++-.+=.|++ |-..++ ....|.+...|++...||
T Consensus 62 V~~Fi~ya~~hp~~~F~VT~IGCGiA-G~~~~e--IAplF~~a~~N~~lp~~f 111 (128)
T PHA00684 62 VNRFIAYATAHPHLNFQVTRVGCGLA-GHLDAD--IAPMFRDAPDNCSFDEAW 111 (128)
T ss_pred HHHHHHHHHhCCCcEEEeeeeccccc-cCCHHH--HHHHHhcCCccccCcHHH
Confidence 35677788889998888888878887 422333 444576666777777665
No 452
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=39.02 E-value=1.2e+02 Score=22.06 Aligned_cols=31 Identities=16% Similarity=0.346 Sum_probs=23.0
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEecccccccCC
Q psy207 44 TEDQWKQLAQLFKERPSLFVFFDSAYQGFASG 75 (109)
Q Consensus 44 t~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g 75 (109)
...|.-.|+..+..+|. ++++||.+.|+...
T Consensus 133 G~~qrl~laral~~~p~-llllDEPt~gLD~~ 163 (235)
T cd03299 133 GEQQRVAIARALVVNPK-ILLLDEPFSALDVR 163 (235)
T ss_pred HHHHHHHHHHHHHcCCC-EEEECCCcccCCHH
Confidence 44555666777777855 89999999999654
No 453
>cd01018 ZntC Metal binding protein ZntC. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and bind their specific ligands in the cleft between these domains. In addition, many of these proteins possess a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=38.97 E-value=1.5e+02 Score=22.20 Aligned_cols=56 Identities=23% Similarity=0.322 Sum_probs=37.5
Q ss_pred cCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHh-HHhCCcEEEEechhhh
Q psy207 38 VGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYF-AQEGFEFLCSQSFAKN 103 (109)
Q Consensus 38 ~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~-~~~~~~~~v~~SfSK~ 103 (109)
..+..+++.+++++.+.++++ ++-.||-+.- + .. ..++.+ .+.+..++....++.+
T Consensus 196 ~~~~eps~~~l~~l~~~ik~~-~v~~if~e~~--~-~~------~~~~~la~~~g~~v~~ld~~~~~ 252 (266)
T cd01018 196 EEGKEPSPADLKRLIDLAKEK-GVRVVFVQPQ--F-ST------KSAEAIAREIGAKVVTIDPLAAD 252 (266)
T ss_pred CCCCCCCHHHHHHHHHHHHHc-CCCEEEEcCC--C-Cc------HHHHHHHHHcCCeEEEeCCcHHH
Confidence 468889999999999999999 8866664431 1 11 133333 3567777777777644
No 454
>PF03460 NIR_SIR_ferr: Nitrite/Sulfite reductase ferredoxin-like half domain; InterPro: IPR005117 Sulphite reductases (SiRs) and related nitrite reductases (NiRs) catalyse the six-electron reduction reactions of sulphite to sulphide, and nitrite to ammonia, respectively. The Escherichia coli SiR enzyme is a complex composed of two proteins, a flavoprotein alpha-component (SiR-FP) and a hemoprotein beta-component (SiR-HP), and has an alpha(8)beta(4) quaternary structure []. SiR-FP contains both FAD and FMN, while SiR-HP contains a Fe(4)S(4) cluster coupled to a sirohaem through a cysteine bridge. Electrons are transferred from NADPH to FAD, and on to FMN in SiR-FP, from which they are transferred to the metal centre of SiR-HP, where they reduce the siroheme-bound sulphite. SiR-HP has a two-fold symmetry, which generates a distinctive three-domain alpha/beta fold that controls assembly and reactivity []. This entry describes the ferrodoxin-like (alpha/beta sandwich) domain, which consists of a duplication containing two subdomains of this fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3B0H_A 4GEP_A 2GEP_A 2AOP_A 5AOP_A 6GEP_A 4AOP_A 1AOP_A 3AOP_A 8GEP_A ....
Probab=38.81 E-value=15 Score=21.73 Aligned_cols=26 Identities=19% Similarity=0.335 Sum_probs=19.8
Q ss_pred eeeeccCCCCCCHHHHHHHHHHHHhC
Q psy207 33 KVNLSVGGCDPTEDQWKQLAQLFKER 58 (109)
Q Consensus 33 kv~L~~~~~~lt~eqw~~i~~~~~~~ 58 (109)
.|-+.+-+-.++.+||+.|++++++.
T Consensus 11 ~v~~~~~~G~i~~~~l~~la~ia~~y 36 (69)
T PF03460_consen 11 MVRIRIPGGRISAEQLRALAEIAEKY 36 (69)
T ss_dssp EEEEB-GGGEEEHHHHHHHHHHHHHH
T ss_pred EEEEeCCCEEECHHHHHHHHHHHHHh
Confidence 44555555566999999999999986
No 455
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=38.80 E-value=1.2e+02 Score=21.93 Aligned_cols=32 Identities=16% Similarity=0.277 Sum_probs=22.7
Q ss_pred CCHHHHHHHHHHHHhCCCcEEEEecccccccCC
Q psy207 43 PTEDQWKQLAQLFKERPSLFVFFDSAYQGFASG 75 (109)
Q Consensus 43 lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g 75 (109)
-...|--.|+..+..+|+ ++++||...++...
T Consensus 117 gG~~qrv~la~al~~~p~-lllLDEPt~gLD~~ 148 (230)
T TIGR01184 117 GGMKQRVAIARALSIRPK-VLLLDEPFGALDAL 148 (230)
T ss_pred HHHHHHHHHHHHHHcCCC-EEEEcCCCcCCCHH
Confidence 344455556666667766 89999999998755
No 456
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=38.75 E-value=96 Score=23.23 Aligned_cols=36 Identities=14% Similarity=0.209 Sum_probs=25.3
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCC
Q psy207 39 GGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASG 75 (109)
Q Consensus 39 ~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g 75 (109)
....-...|.-.|+..+..+|. ++++||.+.++...
T Consensus 139 ~~LS~G~~qrv~lAraL~~~p~-llllDEPt~~LD~~ 174 (277)
T PRK13642 139 ARLSGGQKQRVAVAGIIALRPE-IIILDESTSMLDPT 174 (277)
T ss_pred ccCCHHHHHHHHHHHHHHcCCC-EEEEeCCcccCCHH
Confidence 3333444556667777777866 88999999988755
No 457
>PLN03032 serine decarboxylase; Provisional
Probab=38.65 E-value=45 Score=26.73 Aligned_cols=33 Identities=24% Similarity=0.505 Sum_probs=24.4
Q ss_pred ccCCCCCCHHHHHHHHHHHHhCCC-----cEEEEeccccccc
Q psy207 37 SVGGCDPTEDQWKQLAQLFKERPS-----LFVFFDSAYQGFA 73 (109)
Q Consensus 37 ~~~~~~lt~eqw~~i~~~~~~~p~-----~~~~~D~AY~gf~ 73 (109)
+.+|.. +.+++|+++++++ + +++.+|-||-++.
T Consensus 172 t~tG~i---dpi~eI~~i~~~~-g~~~~~~~lHvDaA~gg~~ 209 (374)
T PLN03032 172 TVKGAV---DDLDRILRILKEL-GYTEDRFYIHCDGALFGLM 209 (374)
T ss_pred cCCccC---CCHHHHHHHHHHh-CCCCCCeeEEEEccchhhh
Confidence 667766 5556777777787 5 5899999987754
No 458
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=38.56 E-value=1.1e+02 Score=22.26 Aligned_cols=30 Identities=20% Similarity=0.411 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHhCCCcEEEEecccccccCC
Q psy207 45 EDQWKQLAQLFKERPSLFVFFDSAYQGFASG 75 (109)
Q Consensus 45 ~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g 75 (109)
.-|--.|+..+..+|. ++++||...++...
T Consensus 149 q~qrv~la~al~~~p~-lllLDEPt~~LD~~ 178 (250)
T PRK11264 149 QQQRVAIARALAMRPE-VILFDEPTSALDPE 178 (250)
T ss_pred HHHHHHHHHHHhcCCC-EEEEeCCCccCCHH
Confidence 3444455666667766 88999999988654
No 459
>PRK00207 sulfur transfer complex subunit TusD; Validated
Probab=38.51 E-value=1.2e+02 Score=20.50 Aligned_cols=47 Identities=19% Similarity=0.163 Sum_probs=28.7
Q ss_pred cEEEEecccccccCCChhhh---H-HHHHHh-HHhCCcEEEEechhhhhccC
Q psy207 61 LFVFFDSAYQGFASGDLERD---A-FAVRYF-AQEGFEFLCSQSFAKNFGLY 107 (109)
Q Consensus 61 ~~~~~D~AY~gf~~g~~~~d---~-~~l~~~-~~~~~~~~v~~SfSK~fgly 107 (109)
++.+-|-+|+....-..+.| . ...+.+ ...+.+++||.++.+..|+.
T Consensus 37 vFf~~DgV~~a~~~q~p~~~~~n~~~~~~~L~~~~~v~l~vC~~~a~~RGl~ 88 (128)
T PRK00207 37 VFFYQDGVLNANALTVPASDEFDLVRAWQQLAAEHGVALNVCVAAALRRGVV 88 (128)
T ss_pred EEEehHHHHHHhcCCCCchhhhhHHHHHHHHHHhcCCEEEEeHHHHHHcCCC
Confidence 35556666876443222222 2 223344 34568999999999999875
No 460
>COG3358 Uncharacterized conserved protein [Function unknown]
Probab=38.37 E-value=17 Score=27.81 Aligned_cols=36 Identities=22% Similarity=0.496 Sum_probs=30.8
Q ss_pred cccCCccCCCChhhchhhhhcCCCCCCeeee-ccCCC
Q psy207 6 SFSSVQQGPPIEVFAVNKAYLDDPHPKKVNL-SVGGC 41 (109)
Q Consensus 6 ~f~~v~~~p~d~~f~l~~~~~~d~~~~kv~L-~~~~~ 41 (109)
-|..+.+-|+||++.+...|...+.+..|.| +.+|+
T Consensus 120 ~F~gL~yfppdpewRi~ary~p~~d~atvel~t~~G~ 156 (262)
T COG3358 120 EFHGLAYFPPDPEWRIEARYFPEPDAATVELATADGV 156 (262)
T ss_pred ccccceecCCCcccEEEeeccCCCCchheeeecccCc
Confidence 5889999999999999999999998888888 44444
No 461
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=38.35 E-value=1.1e+02 Score=22.00 Aligned_cols=30 Identities=13% Similarity=0.340 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHhCCCcEEEEecccccccCC
Q psy207 45 EDQWKQLAQLFKERPSLFVFFDSAYQGFASG 75 (109)
Q Consensus 45 ~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g 75 (109)
.-|--.|+..+..+|. ++++||...++...
T Consensus 149 ~~qrv~la~al~~~p~-llllDEPt~~LD~~ 178 (241)
T cd03256 149 QQQRVAIARALMQQPK-LILADEPVASLDPA 178 (241)
T ss_pred HHHHHHHHHHHhcCCC-EEEEeCccccCCHH
Confidence 3444455666666755 99999999999654
No 462
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=38.28 E-value=1.2e+02 Score=21.53 Aligned_cols=33 Identities=12% Similarity=0.207 Sum_probs=22.0
Q ss_pred CCCHHHH--HHHHHHHHhCCCcEEEEecccccccCC
Q psy207 42 DPTEDQW--KQLAQLFKERPSLFVFFDSAYQGFASG 75 (109)
Q Consensus 42 ~lt~eqw--~~i~~~~~~~p~~~~~~D~AY~gf~~g 75 (109)
.++.-|. -.|+..+..+|+ ++++||...++...
T Consensus 145 ~LS~G~~qrv~laral~~~p~-lllLDEPt~~LD~~ 179 (228)
T cd03257 145 ELSGGQRQRVAIARALALNPK-LLIADEPTSALDVS 179 (228)
T ss_pred hcCHHHHHHHHHHHHHhcCCC-EEEecCCCCCCCHH
Confidence 3444444 445555666755 89999999998654
No 463
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=38.07 E-value=1.1e+02 Score=23.60 Aligned_cols=53 Identities=11% Similarity=0.173 Sum_probs=36.4
Q ss_pred CHHHHHHHHHHHHhCCCc---EEEEeccccc----------ccCC--ChhhhHHHHHHhHHhCCcEEEE
Q psy207 44 TEDQWKQLAQLFKERPSL---FVFFDSAYQG----------FASG--DLERDAFAVRYFAQEGFEFLCS 97 (109)
Q Consensus 44 t~eqw~~i~~~~~~~p~~---~~~~D~AY~g----------f~~g--~~~~d~~~l~~~~~~~~~~~v~ 97 (109)
+.++..++++-++++ ++ .+.+|.-|.+ |..+ .++.-...++.+.+.+..+++.
T Consensus 22 ~~~~v~~~~~~~~~~-~iP~d~i~lD~~w~~~~~~~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~ 89 (317)
T cd06598 22 NWQEVDDTIKTLREK-DFPLDAAILDLYWFGKDIDKGHMGNLDWDRKAFPDPAGMIADLAKKGVKTIVI 89 (317)
T ss_pred CHHHHHHHHHHHHHh-CCCceEEEEechhhcCcccCCceeeeEeccccCCCHHHHHHHHHHcCCcEEEE
Confidence 789999999999998 76 7888887754 3322 2222335566677777766653
No 464
>TIGR03527 selenium_YedF selenium metabolism protein YedF. Members of this protein family are about 200 amino acids in size, and include the uncharacterized YedF protein of Escherichia coli. This family shares an N-terminal domain, modeled by pfam01206, with the sulfurtransferase TusA (also called SirA). The C-terminal domain includes a typical redox-active disulfide motif, CGXC. This protein family found only among those genomes that also carry the selenium donor protein SelD, and its connection to selenium metabolism is indicated by the method of partial phylogenetic profiling vs. SelD. Its gene typically is found next to selD. Members of this family are found even when selenocysteine and selenouridine biosynthesis pathways are, except for SelD, completely absent, as in Enterococcus faecalis. Its role in selenium metabolism is unclear, but may include either detoxification or a role in labile selenoprotein biosynthesis.
Probab=37.91 E-value=27 Score=25.55 Aligned_cols=63 Identities=14% Similarity=0.155 Sum_probs=39.5
Q ss_pred CCHHHHHHHHHHHHhC---CC-cEEEEecccccccCCChhhhHHHHHHhHHhCCcEEEEechhhhhccCC
Q psy207 43 PTEDQWKQLAQLFKER---PS-LFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQSFAKNFGLYS 108 (109)
Q Consensus 43 lt~eqw~~i~~~~~~~---p~-~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~~~~v~~SfSK~fglyg 108 (109)
|..-=.+.++..+.+. |. ++.+-|-++..-. +. +-...++.+.+.+.++++|.+|.+.||+..
T Consensus 102 LG~~Lm~~f~~~L~e~~~~p~~Ifl~n~gV~l~~~-~~--~~~e~Lk~L~~~Gv~I~~CGtCl~~~gl~~ 168 (194)
T TIGR03527 102 LGRILMKGFIYTLSELDPLPKRILFVNGGVKLTTE-GS--EVLEDLKELEKKGVEILSCGTCLDFYGLKD 168 (194)
T ss_pred HHHHHHHHHHHHHHhCCCCceEEEEEccceeeccC-Cc--hHHHHHHHHHHCCCEEEEeHHHHHhcCCcc
Confidence 4444446666666664 22 3444454444432 21 223456777889999999999999999864
No 465
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=37.75 E-value=1.2e+02 Score=21.30 Aligned_cols=37 Identities=11% Similarity=0.154 Sum_probs=24.9
Q ss_pred cCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCC
Q psy207 38 VGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASG 75 (109)
Q Consensus 38 ~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g 75 (109)
|....-...|.-.|+..+..+|. ++++||...++...
T Consensus 128 ~~~LS~G~~qr~~laral~~~p~-llllDEPt~~LD~~ 164 (213)
T cd03301 128 PKQLSGGQRQRVALGRAIVREPK-VFLMDEPLSNLDAK 164 (213)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCC-EEEEcCCcccCCHH
Confidence 33334444555566766767755 99999999999654
No 466
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=37.67 E-value=1.2e+02 Score=21.43 Aligned_cols=30 Identities=20% Similarity=0.402 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHhCCCcEEEEecccccccCC
Q psy207 45 EDQWKQLAQLFKERPSLFVFFDSAYQGFASG 75 (109)
Q Consensus 45 ~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g 75 (109)
.-|.-.|+..+..+|+ ++++||...++...
T Consensus 135 ~~qrl~la~al~~~p~-~lllDEPt~~LD~~ 164 (213)
T cd03259 135 QQQRVALARALAREPS-LLLLDEPLSALDAK 164 (213)
T ss_pred HHHHHHHHHHHhcCCC-EEEEcCCcccCCHH
Confidence 4444556666666755 89999999988644
No 467
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=37.63 E-value=1.4e+02 Score=21.12 Aligned_cols=31 Identities=23% Similarity=0.326 Sum_probs=22.2
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEecccccccCC
Q psy207 44 TEDQWKQLAQLFKERPSLFVFFDSAYQGFASG 75 (109)
Q Consensus 44 t~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g 75 (109)
...|.-.|+..+..+|+ ++++||...++...
T Consensus 145 G~~qrv~laral~~~p~-illlDEPt~~LD~~ 175 (221)
T TIGR02211 145 GERQRVAIARALVNQPS-LVLADEPTGNLDNN 175 (221)
T ss_pred HHHHHHHHHHHHhCCCC-EEEEeCCCCcCCHH
Confidence 34455566666667756 89999999988654
No 468
>PF05209 MinC_N: Septum formation inhibitor MinC, N-terminal domain; InterPro: IPR007874 In Escherichia coli FtsZ (P0A9A6 from SWISSPROT) assembles into a Z ring at midcell. Its assembly at polar sites is prevented by the min system. MinC P18196 from SWISSPROT, a component of this system, is an inhibitor of FtsZ assembly that is positioned within the cell by interaction with the MinDE proteins. MinC is an oligomer, probably a dimer []. The C-terminal half of MinC is the most conserved and interacts with MinD. The N-terminal half is thought to interact with FtsZ. MinC rapidly oscillates between the poles of the cell to destabilise FtsZ filaments that have formed before they mature into polar Z rings; GO: 0051302 regulation of cell division; PDB: 3GHF_A 1HF2_C.
Probab=37.45 E-value=11 Score=24.28 Aligned_cols=29 Identities=24% Similarity=0.330 Sum_probs=20.6
Q ss_pred eeeccCCCCCCHHHHHHHHHHHHhCCCcEEE
Q psy207 34 VNLSVGGCDPTEDQWKQLAQLFKERPSLFVF 64 (109)
Q Consensus 34 v~L~~~~~~lt~eqw~~i~~~~~~~p~~~~~ 64 (109)
|.|+..+. .++.+|.++.++++++ ++.|+
T Consensus 48 vvldl~~l-~~~~dl~~L~~~l~~~-gl~~v 76 (99)
T PF05209_consen 48 VVLDLSNL-PDELDLAALVELLRRH-GLRPV 76 (99)
T ss_dssp EEEEEEEE-ETTHHHHHHHHHHHCC-CHCCC
T ss_pred eEEehhhc-CChhhHHHHHHHHHHc-CCEEE
Confidence 33333344 7788999999999998 87554
No 469
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=37.38 E-value=1e+02 Score=22.19 Aligned_cols=26 Identities=15% Similarity=0.353 Sum_probs=18.5
Q ss_pred HHHHHHHHhCCCcEEEEecccccccCC
Q psy207 49 KQLAQLFKERPSLFVFFDSAYQGFASG 75 (109)
Q Consensus 49 ~~i~~~~~~~p~~~~~~D~AY~gf~~g 75 (109)
-.|+..+..+|. ++++||...|+...
T Consensus 146 l~la~al~~~p~-illlDEPt~~LD~~ 171 (237)
T PRK11614 146 LAIGRALMSQPR-LLLLDEPSLGLAPI 171 (237)
T ss_pred HHHHHHHHhCCC-EEEEcCccccCCHH
Confidence 344555556755 89999999998654
No 470
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=37.30 E-value=1.1e+02 Score=22.98 Aligned_cols=38 Identities=16% Similarity=0.170 Sum_probs=27.8
Q ss_pred ccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCC
Q psy207 37 SVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASG 75 (109)
Q Consensus 37 ~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g 75 (109)
.|....-..-|.-.|+..+..+|. ++++||...++...
T Consensus 137 ~~~~LSgGq~qrv~lAral~~~p~-lLlLDEPt~~LD~~ 174 (279)
T PRK13650 137 EPARLSGGQKQRVAIAGAVAMRPK-IIILDEATSMLDPE 174 (279)
T ss_pred CcccCCHHHHHHHHHHHHHHcCCC-EEEEECCcccCCHH
Confidence 444444446677778888888866 99999999999654
No 471
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=37.02 E-value=52 Score=26.70 Aligned_cols=55 Identities=15% Similarity=0.291 Sum_probs=36.8
Q ss_pred hchhhhhcCCCC-CCeeeeccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCChhh
Q psy207 19 FAVNKAYLDDPH-PKKVNLSVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLER 79 (109)
Q Consensus 19 f~l~~~~~~d~~-~~kv~L~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~ 79 (109)
|+..-+..+-.+ -.|+-+|||-..--+|..+++++.+|++ ++ |+= .|-.+|++++
T Consensus 89 Fd~~lAl~a~~~G~~~iRINPGNig~~~~~v~~vv~~ak~~-~i-pIR----IGvN~GSL~~ 144 (360)
T PRK00366 89 FDYRLALAAAEAGADALRINPGNIGKRDERVREVVEAAKDY-GI-PIR----IGVNAGSLEK 144 (360)
T ss_pred CCHHHHHHHHHhCCCEEEECCCCCCchHHHHHHHHHHHHHC-CC-CEE----EecCCccChH
Confidence 444333333333 5799999998875589999999999999 74 332 3555555543
No 472
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=36.91 E-value=1.5e+02 Score=22.73 Aligned_cols=56 Identities=14% Similarity=0.159 Sum_probs=38.0
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCc---EEEEecccccccCCCh-------hhhHHHHHHhHHhCCcEEE
Q psy207 39 GGCDPTEDQWKQLAQLFKERPSL---FVFFDSAYQGFASGDL-------ERDAFAVRYFAQEGFEFLC 96 (109)
Q Consensus 39 ~~~~lt~eqw~~i~~~~~~~p~~---~~~~D~AY~gf~~g~~-------~~d~~~l~~~~~~~~~~~v 96 (109)
-....+.++..++++-++++ ++ .+.+|.-|+.-. |+. ..-...++.+.+.+.++++
T Consensus 23 ~~~~~s~~~v~~~~~~~~~~-~iP~d~i~iD~~w~~~~-g~f~~d~~~FPdp~~mi~~l~~~G~k~~l 88 (303)
T cd06592 23 YKADINQETVLNYAQEIIDN-GFPNGQIEIDDNWETCY-GDFDFDPTKFPDPKGMIDQLHDLGFRVTL 88 (303)
T ss_pred hccCcCHHHHHHHHHHHHHc-CCCCCeEEeCCCccccC-CccccChhhCCCHHHHHHHHHHCCCeEEE
Confidence 35688999999999999998 76 888998777532 322 1122344555566766554
No 473
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=36.89 E-value=1.1e+02 Score=21.36 Aligned_cols=33 Identities=12% Similarity=0.217 Sum_probs=22.1
Q ss_pred CCCHHHH--HHHHHHHHhCCCcEEEEecccccccCC
Q psy207 42 DPTEDQW--KQLAQLFKERPSLFVFFDSAYQGFASG 75 (109)
Q Consensus 42 ~lt~eqw--~~i~~~~~~~p~~~~~~D~AY~gf~~g 75 (109)
.++.-|. -.|+..+..+|+ +++.||...++...
T Consensus 134 ~lS~G~~qr~~laral~~~p~-llllDEPt~~LD~~ 168 (206)
T TIGR03608 134 ELSGGEQQRVALARAILKDPP-LILADEPTGSLDPK 168 (206)
T ss_pred hCCHHHHHHHHHHHHHHcCCC-EEEEeCCcCCCCHH
Confidence 3444444 445666666755 99999999988644
No 474
>PLN02978 pyridoxal kinase
Probab=36.70 E-value=81 Score=24.30 Aligned_cols=32 Identities=16% Similarity=0.244 Sum_probs=14.3
Q ss_pred cCCCCCCHHHHHHHHHHHHh----CCCcEEEEeccc
Q psy207 38 VGGCDPTEDQWKQLAQLFKE----RPSLFVFFDSAY 69 (109)
Q Consensus 38 ~~~~~lt~eqw~~i~~~~~~----~p~~~~~~D~AY 69 (109)
.+|+..+.++.+.+++++++ .|++.+++|-.+
T Consensus 91 ~~G~l~s~~~~~~v~~~l~~~~~~~~~~~vvlDPvm 126 (308)
T PLN02978 91 LTGYIGSVSFLRTVLRVVKKLRSVNPNLTYVCDPVL 126 (308)
T ss_pred EecccCCHHHHHHHHHHHHHHHHhCCCCeEEECCcc
Confidence 34444445555544444432 123444555554
No 475
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=36.65 E-value=1.3e+02 Score=21.82 Aligned_cols=30 Identities=20% Similarity=0.499 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHhCCCcEEEEecccccccCC
Q psy207 45 EDQWKQLAQLFKERPSLFVFFDSAYQGFASG 75 (109)
Q Consensus 45 ~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g 75 (109)
.-|.-.|+..+..+|+ ++++||...++...
T Consensus 142 ~~qrv~laral~~~p~-llllDEPt~~LD~~ 171 (241)
T PRK10895 142 ERRRVEIARALAANPK-FILLDEPFAGVDPI 171 (241)
T ss_pred HHHHHHHHHHHhcCCC-EEEEcCCcccCCHH
Confidence 4444556666666755 89999999998654
No 476
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=36.64 E-value=1.3e+02 Score=24.42 Aligned_cols=41 Identities=15% Similarity=0.327 Sum_probs=31.8
Q ss_pred eeccCCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCCC
Q psy207 35 NLSVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGD 76 (109)
Q Consensus 35 ~L~~~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~ 76 (109)
+-.|....-...|.-.|+..+..+|+ ++++||...|+....
T Consensus 386 ~~~~~~LSgGq~qrv~la~al~~~p~-illLDEPt~gLD~~~ 426 (491)
T PRK10982 386 RTQIGSLSGGNQQKVIIGRWLLTQPE-ILMLDEPTRGIDVGA 426 (491)
T ss_pred ccccccCCcHHHHHHHHHHHHhcCCC-EEEEcCCCcccChhH
Confidence 33556666677888888888888866 999999999997663
No 477
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=36.46 E-value=61 Score=26.54 Aligned_cols=31 Identities=16% Similarity=0.210 Sum_probs=28.1
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEecccccccCC
Q psy207 44 TEDQWKQLAQLFKERPSLFVFFDSAYQGFASG 75 (109)
Q Consensus 44 t~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g 75 (109)
|.++++++++.+.++ ++-+|+|.+.-..+.+
T Consensus 79 t~~dl~~Li~~~H~~-Gi~vi~D~V~NH~~~~ 109 (479)
T PRK09441 79 TKEELLNAIDALHEN-GIKVYADVVLNHKAGA 109 (479)
T ss_pred CHHHHHHHHHHHHHC-CCEEEEEECcccccCC
Confidence 789999999999999 9999999998887744
No 478
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=36.33 E-value=1.1e+02 Score=22.07 Aligned_cols=28 Identities=18% Similarity=0.391 Sum_probs=19.6
Q ss_pred HHHHHHHHHHhCCCcEEEEecccccccCC
Q psy207 47 QWKQLAQLFKERPSLFVFFDSAYQGFASG 75 (109)
Q Consensus 47 qw~~i~~~~~~~p~~~~~~D~AY~gf~~g 75 (109)
|.-.|+..+..+|+ ++++||...++...
T Consensus 143 qrv~la~al~~~p~-llllDEP~~~LD~~ 170 (240)
T PRK09493 143 QRVAIARALAVKPK-LMLFDEPTSALDPE 170 (240)
T ss_pred HHHHHHHHHhcCCC-EEEEcCCcccCCHH
Confidence 33445555656755 89999999988654
No 479
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=36.10 E-value=1.3e+02 Score=21.23 Aligned_cols=31 Identities=16% Similarity=0.337 Sum_probs=21.8
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEecccccccCC
Q psy207 44 TEDQWKQLAQLFKERPSLFVFFDSAYQGFASG 75 (109)
Q Consensus 44 t~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g 75 (109)
..-|.-.|+..+..+|. ++++||.-.++...
T Consensus 133 G~~qrl~la~al~~~p~-llllDEPt~~LD~~ 163 (204)
T PRK13538 133 GQQRRVALARLWLTRAP-LWILDEPFTAIDKQ 163 (204)
T ss_pred HHHHHHHHHHHHhcCCC-EEEEeCCCccCCHH
Confidence 34455566666667755 88889999888654
No 480
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=36.01 E-value=1.5e+02 Score=21.19 Aligned_cols=31 Identities=23% Similarity=0.328 Sum_probs=21.9
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEecccccccCC
Q psy207 44 TEDQWKQLAQLFKERPSLFVFFDSAYQGFASG 75 (109)
Q Consensus 44 t~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g 75 (109)
...|--.|+..+..+|. ++++||...++...
T Consensus 145 G~~qrv~laral~~~p~-illlDEP~~~LD~~ 175 (220)
T TIGR02982 145 GQKQRVAIARALVHRPK-LVLADEPTAALDSK 175 (220)
T ss_pred HHHHHHHHHHHHhcCCC-EEEEeCCCCcCCHH
Confidence 34444556666666755 99999999998654
No 481
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=35.81 E-value=1e+02 Score=24.28 Aligned_cols=46 Identities=17% Similarity=0.253 Sum_probs=34.5
Q ss_pred hhhcCCCCCCeeeeccCC--CCCCHHHHHHHHHHHHhCCCc----EEEEecc
Q psy207 23 KAYLDDPHPKKVNLSVGG--CDPTEDQWKQLAQLFKERPSL----FVFFDSA 68 (109)
Q Consensus 23 ~~~~~d~~~~kv~L~~~~--~~lt~eqw~~i~~~~~~~p~~----~~~~D~A 68 (109)
..+....+|+...+.|.+ ..++-||.+++.+.+..+|.. ++|+|.|
T Consensus 66 ~~~~~g~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~a 117 (334)
T PRK07993 66 QLMQAGTHPDYYTLTPEKGKSSLGVDAVREVTEKLYEHARLGGAKVVWLPDA 117 (334)
T ss_pred HHHHcCCCCCEEEEecccccccCCHHHHHHHHHHHhhccccCCceEEEEcch
Confidence 345567788888887765 579999999999988765321 7777765
No 482
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=35.51 E-value=1.1e+02 Score=22.18 Aligned_cols=36 Identities=14% Similarity=0.264 Sum_probs=24.5
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCcEEEEecccccccCC
Q psy207 39 GGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASG 75 (109)
Q Consensus 39 ~~~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g 75 (109)
....-...|.-.|+..+..+|. +++.||...++...
T Consensus 129 ~~lS~G~~qrl~laral~~~p~-llllDEP~~~LD~~ 164 (237)
T TIGR00968 129 NQLSGGQRQRVALARALAVEPQ-VLLLDEPFGALDAK 164 (237)
T ss_pred hhCCHHHHHHHHHHHHHhcCCC-EEEEcCCcccCCHH
Confidence 3334444555566777777765 88999999998654
No 483
>PRK05402 glycogen branching enzyme; Provisional
Probab=35.51 E-value=60 Score=28.31 Aligned_cols=31 Identities=16% Similarity=0.255 Sum_probs=27.7
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEecccccccCC
Q psy207 44 TEDQWKQLAQLFKERPSLFVFFDSAYQGFASG 75 (109)
Q Consensus 44 t~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g 75 (109)
|+++++++++.+.++ ++-||+|..|-.++.+
T Consensus 313 t~~dfk~lV~~~H~~-Gi~VilD~V~NH~~~~ 343 (726)
T PRK05402 313 TPDDFRYFVDACHQA-GIGVILDWVPAHFPKD 343 (726)
T ss_pred CHHHHHHHHHHHHHC-CCEEEEEECCCCCCCC
Confidence 689999999999999 9999999999877543
No 484
>PRK06427 bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase; Reviewed
Probab=35.50 E-value=69 Score=23.59 Aligned_cols=46 Identities=17% Similarity=0.203 Sum_probs=30.9
Q ss_pred chhhhhcCCCCCCeeeeccCCCCCCHHHHHHHHHHHHhCCCc-EEEEeccc
Q psy207 20 AVNKAYLDDPHPKKVNLSVGGCDPTEDQWKQLAQLFKERPSL-FVFFDSAY 69 (109)
Q Consensus 20 ~l~~~~~~d~~~~kv~L~~~~~~lt~eqw~~i~~~~~~~p~~-~~~~D~AY 69 (109)
...+....+...+.|.++. ..+.++.+.+++.++++ +. .+++|-..
T Consensus 63 ~q~~~~~~~~~~~ai~iG~---l~~~~~~~~i~~~~~~~-~~~~vv~DPv~ 109 (266)
T PRK06427 63 AQLDAVFSDIRIDAVKIGM---LASAEIIETVAEALKRY-PIPPVVLDPVM 109 (266)
T ss_pred HHHHHHHhcCCCCEEEECC---cCCHHHHHHHHHHHHhC-CCCCEEEcCcc
Confidence 3344555555555555544 45789999999999887 54 67889653
No 485
>KOG0339|consensus
Probab=35.41 E-value=96 Score=26.97 Aligned_cols=60 Identities=20% Similarity=0.356 Sum_probs=37.4
Q ss_pred CCCCHHHHHHHHHHHHhCCCc----EEEEecccccccCCChhhhHHHHHH-hHHhCCcEEEEechhhh
Q psy207 41 CDPTEDQWKQLAQLFKERPSL----FVFFDSAYQGFASGDLERDAFAVRY-FAQEGFEFLCSQSFAKN 103 (109)
Q Consensus 41 ~~lt~eqw~~i~~~~~~~p~~----~~~~D~AY~gf~~g~~~~d~~~l~~-~~~~~~~~~v~~SfSK~ 103 (109)
..-||+.+.+++.. +.- ++ ++++|||=.=|..| ++.-...+.. .....-.+++..||+|.
T Consensus 350 vVaTPgRlid~Vkm-Kat-n~~rvS~LV~DEadrmfdmG-fe~qVrSI~~hirpdrQtllFsaTf~~k 414 (731)
T KOG0339|consen 350 VVATPGRLIDMVKM-KAT-NLSRVSYLVLDEADRMFDMG-FEPQVRSIKQHIRPDRQTLLFSATFKKK 414 (731)
T ss_pred EEechHHHHHHHHh-hcc-cceeeeEEEEechhhhhccc-cHHHHHHHHhhcCCcceEEEeeccchHH
Confidence 34566655444442 121 22 88999999888877 5554444432 22455688899999885
No 486
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=35.36 E-value=1.4e+02 Score=22.73 Aligned_cols=30 Identities=10% Similarity=0.205 Sum_probs=23.7
Q ss_pred CCeeeeccCCC-----CCCHHHHHHHHHHHHhCCCc
Q psy207 31 PKKVNLSVGGC-----DPTEDQWKQLAQLFKERPSL 61 (109)
Q Consensus 31 ~~kv~L~~~~~-----~lt~eqw~~i~~~~~~~p~~ 61 (109)
.+.|.++|++. ..+.|+|.++++.+.++ +.
T Consensus 174 ~~~i~i~pga~~~~~K~Wp~e~~~~li~~l~~~-~~ 208 (334)
T TIGR02195 174 RPIIAFCPGAEFGPAKRWPHEHYAELAKRLIDQ-GY 208 (334)
T ss_pred CCEEEEcCCCCCCccCCCCHHHHHHHHHHHHHC-CC
Confidence 45677888763 57899999999999876 54
No 487
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=35.21 E-value=1.3e+02 Score=21.34 Aligned_cols=34 Identities=15% Similarity=0.224 Sum_probs=23.5
Q ss_pred CCCCHHHHHHHHHHHHhCCCcEEEEecccccccCC
Q psy207 41 CDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASG 75 (109)
Q Consensus 41 ~~lt~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g 75 (109)
..-..-|.-.|+..+..+|. +++.||...++...
T Consensus 132 LSgG~~qrl~la~al~~~p~-lllLDEPt~~LD~~ 165 (220)
T cd03293 132 LSGGMRQRVALARALAVDPD-VLLLDEPFSALDAL 165 (220)
T ss_pred CCHHHHHHHHHHHHHHcCCC-EEEECCCCCCCCHH
Confidence 33344455566777767755 89999999988654
No 488
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=35.17 E-value=61 Score=27.66 Aligned_cols=31 Identities=16% Similarity=0.203 Sum_probs=27.7
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEecccccccCC
Q psy207 44 TEDQWKQLAQLFKERPSLFVFFDSAYQGFASG 75 (109)
Q Consensus 44 t~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g 75 (109)
|+++++++++.+.++ ++-||+|..|-.++.+
T Consensus 204 t~~dlk~lV~~~H~~-Gi~VilD~V~NH~~~~ 234 (613)
T TIGR01515 204 TPDDFMYFVDACHQA-GIGVILDWVPGHFPKD 234 (613)
T ss_pred CHHHHHHHHHHHHHC-CCEEEEEecccCcCCc
Confidence 588999999999999 9999999999877643
No 489
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=35.14 E-value=1.4e+02 Score=21.34 Aligned_cols=29 Identities=17% Similarity=0.458 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHhCCCcEEEEecccccccCC
Q psy207 46 DQWKQLAQLFKERPSLFVFFDSAYQGFASG 75 (109)
Q Consensus 46 eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g 75 (109)
.|--.|+..+..+|. ++++||...++...
T Consensus 139 ~qrl~la~al~~~p~-llllDEPt~~LD~~ 167 (232)
T cd03218 139 RRRVEIARALATNPK-FLLLDEPFAGVDPI 167 (232)
T ss_pred HHHHHHHHHHhcCCC-EEEecCCcccCCHH
Confidence 333455666666755 88999999998755
No 490
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=34.99 E-value=1.4e+02 Score=21.70 Aligned_cols=31 Identities=16% Similarity=0.308 Sum_probs=22.0
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEecccccccCC
Q psy207 44 TEDQWKQLAQLFKERPSLFVFFDSAYQGFASG 75 (109)
Q Consensus 44 t~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g 75 (109)
...|.-.|+..+..+|+ ++++||...++...
T Consensus 157 G~~qrl~la~al~~~p~-llllDEPt~~LD~~ 187 (236)
T cd03267 157 GQRMRAEIAAALLHEPE-ILFLDEPTIGLDVV 187 (236)
T ss_pred HHHHHHHHHHHHhcCCC-EEEEcCCCCCCCHH
Confidence 34444556666667755 89999999998654
No 491
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=34.93 E-value=1.3e+02 Score=21.71 Aligned_cols=33 Identities=15% Similarity=0.427 Sum_probs=22.9
Q ss_pred CCCHHHHH--HHHHHHHhCCCcEEEEecccccccCC
Q psy207 42 DPTEDQWK--QLAQLFKERPSLFVFFDSAYQGFASG 75 (109)
Q Consensus 42 ~lt~eqw~--~i~~~~~~~p~~~~~~D~AY~gf~~g 75 (109)
.++.-|.+ .|+..+..+|. ++++||...++...
T Consensus 132 ~LS~G~~qrl~laral~~~p~-llllDEP~~~LD~~ 166 (236)
T TIGR03864 132 ELNGGHRRRVEIARALLHRPA-LLLLDEPTVGLDPA 166 (236)
T ss_pred hCCHHHHHHHHHHHHHhcCCC-EEEEcCCccCCCHH
Confidence 45544444 46666667755 89999999999755
No 492
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=34.91 E-value=1.1e+02 Score=24.08 Aligned_cols=46 Identities=20% Similarity=0.224 Sum_probs=34.0
Q ss_pred hhhcCCCCCCeeeeccC--CCCCCHHHHHHHHHHHHhCCC----cEEEEecc
Q psy207 23 KAYLDDPHPKKVNLSVG--GCDPTEDQWKQLAQLFKERPS----LFVFFDSA 68 (109)
Q Consensus 23 ~~~~~d~~~~kv~L~~~--~~~lt~eqw~~i~~~~~~~p~----~~~~~D~A 68 (109)
..+....+|+...+.|. |..++.||.+++.+.+...|. =++|+|.|
T Consensus 66 ~~~~~g~HPD~~~i~p~~~~~~I~vdqiR~l~~~~~~~~~~~~~kV~iI~~a 117 (319)
T PRK06090 66 ELMQSGNHPDLHVIKPEKEGKSITVEQIRQCNRLAQESSQLNGYRLFVIEPA 117 (319)
T ss_pred HHHHcCCCCCEEEEecCcCCCcCCHHHHHHHHHHHhhCcccCCceEEEecch
Confidence 34556778888888886 678999999999998876431 26777655
No 493
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=34.76 E-value=1.3e+02 Score=21.65 Aligned_cols=30 Identities=17% Similarity=0.309 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHhCCCcEEEEecccccccCC
Q psy207 45 EDQWKQLAQLFKERPSLFVFFDSAYQGFASG 75 (109)
Q Consensus 45 ~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g 75 (109)
.-|.-.|+..+..+|. ++++||...++...
T Consensus 141 ~~qrv~ia~al~~~p~-llllDEPt~~LD~~ 170 (235)
T cd03261 141 MKKRVALARALALDPE-LLLYDEPTAGLDPI 170 (235)
T ss_pred HHHHHHHHHHHhcCCC-EEEecCCcccCCHH
Confidence 4445556666666755 89999999998654
No 494
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=34.72 E-value=1e+02 Score=23.16 Aligned_cols=30 Identities=27% Similarity=0.416 Sum_probs=24.0
Q ss_pred CCeeeeccCCC----CCCHHHHHHHHHHHHhCCCc
Q psy207 31 PKKVNLSVGGC----DPTEDQWKQLAQLFKERPSL 61 (109)
Q Consensus 31 ~~kv~L~~~~~----~lt~eqw~~i~~~~~~~p~~ 61 (109)
.+.|.++|++. ..+.|.|.++++.+.++ +.
T Consensus 179 ~~~i~i~~gas~~~K~wp~e~~~~l~~~l~~~-~~ 212 (319)
T TIGR02193 179 APYAVLLHATSRDDKTWPEERWRELARLLLAR-GL 212 (319)
T ss_pred CCEEEEEeCCCcccCCCCHHHHHHHHHHHHHC-CC
Confidence 45677788874 78899999999999876 54
No 495
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=34.70 E-value=1.1e+02 Score=24.00 Aligned_cols=44 Identities=18% Similarity=0.231 Sum_probs=32.0
Q ss_pred hcCCCCCCeeeeccCC--CCCCHHHHHHHHHHHHhCCC----cEEEEecc
Q psy207 25 YLDDPHPKKVNLSVGG--CDPTEDQWKQLAQLFKERPS----LFVFFDSA 68 (109)
Q Consensus 25 ~~~d~~~~kv~L~~~~--~~lt~eqw~~i~~~~~~~p~----~~~~~D~A 68 (109)
+....+|+...+.|.+ ..+.-||.+++.+.+..+|. -++|+|+|
T Consensus 66 ~~~g~HPD~~~i~~~~~~~~i~id~iR~l~~~~~~~~~~~~~kv~iI~~a 115 (328)
T PRK05707 66 LRAGSHPDNFVLEPEEADKTIKVDQVRELVSFVVQTAQLGGRKVVLIEPA 115 (328)
T ss_pred HhcCCCCCEEEEeccCCCCCCCHHHHHHHHHHHhhccccCCCeEEEECCh
Confidence 4456678888887764 46899999999998876532 26677766
No 496
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=34.64 E-value=1.6e+02 Score=21.44 Aligned_cols=30 Identities=20% Similarity=0.391 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHhCCCcEEEEecccccccCC
Q psy207 45 EDQWKQLAQLFKERPSLFVFFDSAYQGFASG 75 (109)
Q Consensus 45 ~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g 75 (109)
..|.-.|+..+..+|. ++++||...++...
T Consensus 151 ~~qrv~laral~~~p~-llllDEP~~~LD~~ 180 (252)
T TIGR03005 151 QQQRVAIARALAMRPK-VMLFDEVTSALDPE 180 (252)
T ss_pred HHHHHHHHHHHHcCCC-EEEEeCCcccCCHH
Confidence 3344455666666755 88999999999644
No 497
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=34.58 E-value=1.3e+02 Score=21.18 Aligned_cols=30 Identities=17% Similarity=0.378 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHhCCCcEEEEecccccccCC
Q psy207 45 EDQWKQLAQLFKERPSLFVFFDSAYQGFASG 75 (109)
Q Consensus 45 ~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g 75 (109)
.-|--.|+..+..+|+ ++++||...++...
T Consensus 139 ~~qrv~laral~~~p~-llllDEPt~~LD~~ 168 (211)
T cd03225 139 QKQRVAIAGVLAMDPD-ILLLDEPTAGLDPA 168 (211)
T ss_pred HHHHHHHHHHHhcCCC-EEEEcCCcccCCHH
Confidence 3344445555656755 89999999998654
No 498
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=34.36 E-value=1.3e+02 Score=25.74 Aligned_cols=39 Identities=18% Similarity=0.341 Sum_probs=29.5
Q ss_pred eccCCCCCCHHHHHHH--HHHHHhCCCcEEEEecccccccCC
Q psy207 36 LSVGGCDPTEDQWKQL--AQLFKERPSLFVFFDSAYQGFASG 75 (109)
Q Consensus 36 L~~~~~~lt~eqw~~i--~~~~~~~p~~~~~~D~AY~gf~~g 75 (109)
++.+|..++--|.++| +..+-++|+ ++++||+..++...
T Consensus 587 i~~~g~~LSgGq~qri~lARall~~~~-ililDEpts~LD~~ 627 (694)
T TIGR01846 587 VGEKGANLSGGQRQRIAIARALVGNPR-ILIFDEATSALDYE 627 (694)
T ss_pred ecCCCCCCCHHHHHHHHHHHHHHhCCC-EEEEECCCcCCCHH
Confidence 4667888998888765 555556756 88999999988654
No 499
>cd03415 CbiX_CbiC Archaeal sirohydrochlorin cobalt chelatase (CbiX) single domain. Proteins in this subgroup contain a single CbiX domain N-terminal to a precorrin-8X methylmutase (CbiC) domain. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, while CbiC catalyzes the conversion of cobalt-precorrin 8 to cobyrinic acid by methyl rearrangement. Both CbiX and CbiC are involved in vitamin B12 biosynthesis.
Probab=34.36 E-value=1.5e+02 Score=20.07 Aligned_cols=43 Identities=12% Similarity=0.283 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHhCCCcEEEEecccccccCCChhhhHHHHHHhHHhCC
Q psy207 45 EDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGF 92 (109)
Q Consensus 45 ~eqw~~i~~~~~~~p~~~~~~D~AY~gf~~g~~~~d~~~l~~~~~~~~ 92 (109)
.++..++++.++++++ ++ +..+|.+++..++++ .++.+++.+.
T Consensus 16 ~~~~~~la~~l~~~~~-~~-v~~afle~~~P~l~~---~l~~l~~~G~ 58 (125)
T cd03415 16 NEDMEEWAAYLERKLG-VP-VYLTYNEYAEPNWRD---LLNELLSEGY 58 (125)
T ss_pred HHHHHHHHHHHHhccC-Cc-eEEEEeecCCCCHHH---HHHHHHHCCC
Confidence 4566778888877745 34 567888888776543 5555555553
No 500
>TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type. This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis.
Probab=34.26 E-value=92 Score=26.86 Aligned_cols=29 Identities=21% Similarity=0.463 Sum_probs=20.7
Q ss_pred CHHHHHHHHHHHHhCCCc--EEEEeccccccc
Q psy207 44 TEDQWKQLAQLFKERPSL--FVFFDSAYQGFA 73 (109)
Q Consensus 44 t~eqw~~i~~~~~~~p~~--~~~~D~AY~gf~ 73 (109)
.-+++.+|++.++++ ++ ++-+|-||-|+.
T Consensus 296 pl~eI~~l~~~~~~~-gl~~~lHVDAAyGG~~ 326 (608)
T TIGR03811 296 GIDKIVALRNKLMKE-GIYFYLHVDAAYGGYG 326 (608)
T ss_pred CHHHHHHHHHHHHHc-CCceeEeeeccccchh
Confidence 445555555545778 76 699999999975
Done!