RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy207
(109 letters)
>1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand
2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa}
SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A*
Length = 412
Score = 136 bits (344), Expect = 4e-40
Identities = 47/69 (68%), Positives = 57/69 (82%), Gaps = 1/69 (1%)
Query: 40 GCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQS 99
G DPT +QWKQ+A + K R LF FFDSAYQGFASG+LE+DA+A+RYF EGFE C+QS
Sbjct: 197 GTDPTPEQWKQIASVMKRR-FLFPFFDSAYQGFASGNLEKDAWAIRYFVSEGFELFCAQS 255
Query: 100 FAKNFGLYS 108
F+KNFGLY+
Sbjct: 256 FSKNFGLYN 264
Score = 57.2 bits (139), Expect = 4e-11
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 2 STESSFSSVQQGPPIEVFAVNKAYLDDPHPKKVNLSVGGC 41
+ S F+ V Q P+ VF + + +DP P+KVNL VG
Sbjct: 1 APPSVFAEVPQAQPVLVFKLIADFREDPDPRKVNLGVGAY 40
>7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET:
PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A*
1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A*
1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A*
3hlm_A* 3pdb_A*
Length = 401
Score = 135 bits (342), Expect = 7e-40
Identities = 38/68 (55%), Positives = 54/68 (79%), Gaps = 1/68 (1%)
Query: 40 GCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQS 99
G DP ++QWK+LA + K+R +L +FD AYQGFASGD+ RDA+A+R+F ++G + + SQS
Sbjct: 189 GVDPRQEQWKELASVVKKR-NLLAYFDMAYQGFASGDINRDAWALRHFIEQGIDVVLSQS 247
Query: 100 FAKNFGLY 107
+AKN GLY
Sbjct: 248 YAKNMGLY 255
Score = 54.9 bits (133), Expect = 2e-10
Identities = 15/35 (42%), Positives = 22/35 (62%)
Query: 5 SSFSSVQQGPPIEVFAVNKAYLDDPHPKKVNLSVG 39
S +S V+ GPP + V +A+ D + KK+NL VG
Sbjct: 2 SWWSHVEMGPPDPILGVTEAFKRDTNSKKMNLGVG 36
>3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural
genomics, seattle structural genomi for infectious
disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia}
Length = 448
Score = 135 bits (343), Expect = 9e-40
Identities = 41/69 (59%), Positives = 47/69 (68%), Gaps = 1/69 (1%)
Query: 40 GCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQS 99
G D TE QWK+L + KE+ FFDSAYQGFA+G E DAFAVR F G E L +QS
Sbjct: 216 GIDFTEAQWKELLPIMKEK-KHIAFFDSAYQGFATGSFEADAFAVRMFVDAGVEVLVAQS 274
Query: 100 FAKNFGLYS 108
F+KNFGLY
Sbjct: 275 FSKNFGLYG 283
Score = 55.4 bits (134), Expect = 2e-10
Identities = 15/38 (39%), Positives = 19/38 (50%)
Query: 2 STESSFSSVQQGPPIEVFAVNKAYLDDPHPKKVNLSVG 39
+ S FS PP + + Y D +PKKVNL VG
Sbjct: 20 GSMSVFSGFPASPPDAILNLTVLYNADTNPKKVNLGVG 57
>4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural
genomics, SEA structural genomics center for infectious
disease; HET: LLP; 2.30A {Trypanosoma brucei}
Length = 409
Score = 134 bits (340), Expect = 2e-39
Identities = 32/68 (47%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
Query: 40 GCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQS 99
G DPT D W+Q+ + K R + F D AYQGFA+G L+ DAF R+ + +QS
Sbjct: 197 GVDPTHDDWRQVCDVIKRR-NHIPFVDMAYQGFATGQLDYDAFVPRHLVDMVPNLIVAQS 255
Query: 100 FAKNFGLY 107
F+KNFGLY
Sbjct: 256 FSKNFGLY 263
Score = 54.2 bits (131), Expect = 3e-10
Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Query: 1 MSTESS--FSSVQQGPPIEVFAVNKAYLDDPHPKKVNLSVG 39
M T + G P + + + + DP +KVNLS+G
Sbjct: 9 MGTLEAQTQGPGSMGKPDPILGLGQDFRMDPAKRKVNLSIG 49
>3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET:
PLP; 2.80A {Plasmodium falciparum}
Length = 405
Score = 133 bits (336), Expect = 5e-39
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 40 GCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQS 99
+ E + ++ ++ + + FD AYQGF +LE D +R F ++ F QS
Sbjct: 188 SVNIEEKYFDEIIEIVLHK-KHVIIFDIAYQGFGHTNLEEDVLLIRKFEEKNIAFSVCQS 246
Query: 100 FAKNFGLY 107
F+KN LY
Sbjct: 247 FSKNMSLY 254
Score = 54.9 bits (133), Expect = 2e-10
Identities = 9/39 (23%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Query: 1 MSTESSFSSVQQGPPIEVFAVNKAYLDDPHPKKVNLSVG 39
M SS++ + + + +D +K+NLS+G
Sbjct: 1 MD--KLLSSLENIEVDNILKTAREFKEDTCEEKINLSIG 37
>1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces
cerevisiae} SCOP: c.67.1.1
Length = 412
Score = 130 bits (328), Expect = 1e-37
Identities = 31/72 (43%), Positives = 43/72 (59%), Gaps = 4/72 (5%)
Query: 40 GCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQE---GFEFLC 96
G DPT +QW Q+ + + FD+AYQGFA+GDL++DA+AVR ++
Sbjct: 190 GLDPTSEQWVQIVDAIASK-NHIALFDTAYQGFATGDLDKDAYAVRLGVEKLSTVSPVFV 248
Query: 97 SQSFAKNFGLYS 108
QSFAKN G+Y
Sbjct: 249 CQSFAKNAGMYG 260
Score = 54.2 bits (131), Expect = 4e-10
Identities = 10/37 (27%), Positives = 21/37 (56%)
Query: 3 TESSFSSVQQGPPIEVFAVNKAYLDDPHPKKVNLSVG 39
+ + F++++ PP +F + + Y D KV+L +G
Sbjct: 1 SATLFNNIELLPPDALFGIKQRYGQDQRATKVDLGIG 37
>2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A
{Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A*
1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A*
2ay7_A* 2ay8_A* 2ay9_A*
Length = 394
Score = 127 bits (321), Expect = 7e-37
Identities = 27/68 (39%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 40 GCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQS 99
G + T DQW ++A + ++ D AYQGF G LE DA R A E L + S
Sbjct: 183 GANLTLDQWAEIASILEKT-GALPLIDLAYQGFGDG-LEEDAAGTRLIASRIPEVLIAAS 240
Query: 100 FAKNFGLY 107
+KNFG+Y
Sbjct: 241 CSKNFGIY 248
Score = 53.3 bits (129), Expect = 8e-10
Identities = 8/33 (24%), Positives = 17/33 (51%)
Query: 7 FSSVQQGPPIEVFAVNKAYLDDPHPKKVNLSVG 39
+++ P ++ A+ + DP K++L VG
Sbjct: 2 LGNLKPQAPDKILALMGEFRADPRQGKIDLGVG 34
>4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics,
seattle structural genomics CEN infectious disease; HET:
LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A*
Length = 420
Score = 127 bits (322), Expect = 7e-37
Identities = 30/69 (43%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Query: 40 GCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQS 99
G D + QW Q+ ++ K R L F D AYQGF +E DA AVR FA S S
Sbjct: 209 GVDLNDAQWAQVVEVVKAR-RLVPFLDIAYQGFGES-IEADAAAVRLFAAANLNVFVSSS 266
Query: 100 FAKNFGLYS 108
F+K+F LY
Sbjct: 267 FSKSFSLYG 275
Score = 54.9 bits (133), Expect = 2e-10
Identities = 15/38 (39%), Positives = 22/38 (57%)
Query: 2 STESSFSSVQQGPPIEVFAVNKAYLDDPHPKKVNLSVG 39
+ S FS+V+ P + +N+A+ D P KVNL VG
Sbjct: 20 GSMSLFSAVELAPRDPILGLNEAFNADTRPTKVNLGVG 57
>3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase,
pyridoxal phosphate, internal ALD schiff base,
amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia
coli k-12} PDB: 3tat_A*
Length = 397
Score = 127 bits (321), Expect = 8e-37
Identities = 32/69 (46%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Query: 40 GCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQS 99
G D T DQW + ++ K R L F D AYQGF +G +E DA+A+R A G L S S
Sbjct: 187 GADLTNDQWDAVIEILKAR-ELIPFLDIAYQGFGAG-MEEDAYAIRAIASAGLPALVSNS 244
Query: 100 FAKNFGLYS 108
F+K F LY
Sbjct: 245 FSKIFSLYG 253
Score = 53.0 bits (128), Expect = 1e-09
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 7 FSSVQQGPPIEVFAVNKAYLDDPHPKKVNLSVG 39
F V + + + + +DP KVNLS+G
Sbjct: 2 FQKVDAYAGDPILTLMERFKEDPRSDKVNLSIG 34
>2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta,
PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia
coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A*
2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A*
1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A*
1asn_A* 1c9c_A* 1cq6_A* ...
Length = 396
Score = 119 bits (300), Expect = 8e-34
Identities = 34/69 (49%), Positives = 43/69 (62%), Gaps = 2/69 (2%)
Query: 40 GCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQS 99
G DPT +QW+ LAQL E+ FD AYQGFA G LE DA +R FA E + + S
Sbjct: 186 GIDPTLEQWQTLAQLSVEK-GWLPLFDFAYQGFARG-LEEDAEGLRAFAAMHKELIVASS 243
Query: 100 FAKNFGLYS 108
++ NFGLY+
Sbjct: 244 YSXNFGLYN 252
Score = 53.0 bits (128), Expect = 1e-09
Identities = 8/33 (24%), Positives = 15/33 (45%)
Query: 7 FSSVQQGPPIEVFAVNKAYLDDPHPKKVNLSVG 39
F ++ P + + + D P K+NL +G
Sbjct: 2 FENITAAPADPILGLADLFRADERPGKINLGIG 34
>3t18_A Aminotransferase class I and II; PSI-biology, MCSG, midwest center
for structural genomics, P 5'-phosphate binding; HET:
PLP; 2.86A {Anaerococcus prevotii}
Length = 413
Score = 111 bits (281), Expect = 5e-31
Identities = 15/75 (20%), Positives = 31/75 (41%), Gaps = 8/75 (10%)
Query: 40 GCDPTEDQWKQLAQLFKERPS-----LFVFFDSAYQGFASGDLERDAFAVRYFAQ--EGF 92
G ++++W ++ KE+ + + D AY FA GD ++ F+
Sbjct: 193 GYSLSDEEWDEVITFLKEKAEDKDKKITLIVDVAYLEFA-GDGDQQRKFFEKFSNLPRNL 251
Query: 93 EFLCSQSFAKNFGLY 107
+ + S +K+ Y
Sbjct: 252 FVVVAFSMSKSHTAY 266
Score = 43.0 bits (102), Expect = 3e-06
Identities = 5/40 (12%), Positives = 14/40 (35%), Gaps = 1/40 (2%)
Query: 1 MSTESS-FSSVQQGPPIEVFAVNKAYLDDPHPKKVNLSVG 39
M+ + + +++ N A +N ++G
Sbjct: 6 MTIKRATWNNGPDLAFDINNKANAAIEKYGREAVINAALG 45
>3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology,
midwest center for structu genomics, MCSG, alpha-beta
structure, cytosol; HET: AKG GOL; 2.20A {Veillonella
parvula}
Length = 418
Score = 108 bits (271), Expect = 2e-29
Identities = 15/75 (20%), Positives = 27/75 (36%), Gaps = 8/75 (10%)
Query: 40 GCDPTEDQWKQLAQLFKERPS-----LFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEF 94
G + W + K+ + + + D AY + SG+ + F+ E
Sbjct: 194 GYSIEDKDWDSILNFLKDLVAIGRNNVIIGIDVAYLDY-SGEKDEVRAFFNKFSHLPKEI 252
Query: 95 L--CSQSFAKNFGLY 107
L S +K F +Y
Sbjct: 253 LTCVCYSLSKGFTMY 267
Score = 43.1 bits (102), Expect = 3e-06
Identities = 5/43 (11%), Positives = 16/43 (37%), Gaps = 4/43 (9%)
Query: 1 MSTESSFSSVQQGPPIEVFAVNKAYL----DDPHPKKVNLSVG 39
M++ ++ + + +F ++ VN ++G
Sbjct: 4 MTSVAAKHAKGKKLKDVIFVTAGQAQADAKENGRENVVNGTLG 46
>2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent
aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus
aureus}
Length = 430
Score = 89.7 bits (223), Expect = 1e-22
Identities = 12/74 (16%), Positives = 21/74 (28%), Gaps = 6/74 (8%)
Query: 40 GCDPTEDQWKQLAQLFKER----PSLFVFFDSAYQGFASGDLERDAF--AVRYFAQEGFE 93
G PT + + + K + D AY G D+ + A+
Sbjct: 203 GYTPTHKEVTTIVEAIKALANKGTKVIAVVDDAYYGLFYEDVYTQSLFTALTNLHSNAIL 262
Query: 94 FLCSQSFAKNFGLY 107
+ K F +
Sbjct: 263 PIRLDGATKEFFAW 276
Score = 28.5 bits (64), Expect = 0.35
Identities = 3/27 (11%), Positives = 9/27 (33%), Gaps = 4/27 (14%)
Query: 13 GPPIEVFAVNKAYLDDPHPKKVNLSVG 39
P + + + + N ++G
Sbjct: 33 FYPKGILSQSA----EAKSTTYNATIG 55
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.9 bits (77), Expect = 0.007
Identities = 14/113 (12%), Positives = 29/113 (25%), Gaps = 24/113 (21%)
Query: 5 SSFSSVQQGPPIEVFAVNKAY----------LDDPHP---------KKVNLSV--GGCDP 43
+ ++ + K Y D L GG
Sbjct: 106 AKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGN 165
Query: 44 TEDQWKQLAQLFKE-RPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFL 95
T+D +++L L++ + + + + L R +G L
Sbjct: 166 TDDYFEELRDLYQTYHVLVGDLIKFSAETLSE--LIRTTLDAEKVFTQGLNIL 216
>3mve_A FRSA, UPF0255 protein VV1_0328; FRSA,fermentation/respiration
switch protein, hydrolase ACTI lyase; 2.20A {Vibrio
vulnificus} PDB: 3our_A
Length = 415
Score = 31.5 bits (71), Expect = 0.041
Identities = 14/70 (20%), Positives = 21/70 (30%), Gaps = 9/70 (12%)
Query: 24 AYL---DDPHPKKVNLSVGGCDPT-EDQWKQLAQLFKERPSLFVFFDSAYQG-----FAS 74
A+L + P V + G D D W+ + + D G +
Sbjct: 182 AHLHLTNTDKPHPVVIVSAGLDSLQTDMWRLFRDHLAKHDIAMLTVDMPSVGYSSKYPLT 241
Query: 75 GDLERDAFAV 84
D R AV
Sbjct: 242 EDYSRLHQAV 251
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor
complex, structural genomics, protein structure
initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens}
SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Length = 461
Score = 28.0 bits (63), Expect = 0.61
Identities = 10/36 (27%), Positives = 14/36 (38%)
Query: 26 LDDPHPKKVNLSVGGCDPTEDQWKQLAQLFKERPSL 61
L P K LS+ C T L+ + P+L
Sbjct: 80 LQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTL 115
Score = 28.0 bits (63), Expect = 0.64
Identities = 8/38 (21%), Positives = 14/38 (36%)
Query: 24 AYLDDPHPKKVNLSVGGCDPTEDQWKQLAQLFKERPSL 61
L P + L + C T L ++ + + SL
Sbjct: 249 PGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESL 286
Score = 26.5 bits (59), Expect = 2.0
Identities = 8/36 (22%), Positives = 15/36 (41%)
Query: 26 LDDPHPKKVNLSVGGCDPTEDQWKQLAQLFKERPSL 61
L DP + L + C + + LA + + +P
Sbjct: 137 LLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDF 172
Score = 26.1 bits (58), Expect = 2.4
Identities = 9/36 (25%), Positives = 16/36 (44%)
Query: 26 LDDPHPKKVNLSVGGCDPTEDQWKQLAQLFKERPSL 61
+ P L + +E+ +L L K++PSL
Sbjct: 422 VRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSL 457
>3llx_A Predicted amino acid aldolase or racemase; structural genomics,
joint center for structural genomics, J protein
structure initiative; HET: LLP TRS; 1.50A {Idiomarina
loihiensis}
Length = 376
Score = 27.5 bits (60), Expect = 0.85
Identities = 9/47 (19%), Positives = 17/47 (36%)
Query: 38 VGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAV 84
G PT + + + + R ++ FD + D A +V
Sbjct: 214 SVGSTPTAHFGEDFSDISEVRAGVYTTFDLVMKNIGVCDFSHIAMSV 260
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 26.4 bits (57), Expect = 2.3
Identities = 9/59 (15%), Positives = 20/59 (33%), Gaps = 2/59 (3%)
Query: 36 LSVGGCDPTEDQWKQLAQLFKE-RPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFE 93
L++ C+ E + L +L + P+ D + + R + +E
Sbjct: 187 LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR-RLLKSKPYE 244
>2jbw_A Dhpon-hydrolase, 2,6-dihydroxy-pseudo-oxynicotine hydrolase;
alpha/beta hydrolase, META-cleavage pathway; 2.1A
{Arthrobacter nicotinovorans} SCOP: c.69.1.41
Length = 386
Score = 26.5 bits (58), Expect = 2.3
Identities = 16/70 (22%), Positives = 28/70 (40%), Gaps = 9/70 (12%)
Query: 24 AYL---DDPHPKKVNLSVGGCDPTEDQWKQLAQLFKERPSLFVFFD------SAYQGFAS 74
Y+ + P P + +GG + T+++ Q+ L +R FD +
Sbjct: 141 VYVRIPEGPGPHPAVIMLGGLESTKEESFQMENLVLDRGMATATFDGPGQGEMFEYKRIA 200
Query: 75 GDLERDAFAV 84
GD E+ AV
Sbjct: 201 GDYEKYTSAV 210
>3l55_A B-1,4-endoglucanase/cellulase; putative beta-1,4-endoglucanase,
glycosyl hydrolase family 5, mixed alpha-beta, TIM
barrel; HET: MSE; 1.60A {Prevotella bryantii} PDB:
3vdh_A*
Length = 353
Score = 26.2 bits (57), Expect = 2.4
Identities = 4/23 (17%), Positives = 9/23 (39%)
Query: 42 DPTEDQWKQLAQLFKERPSLFVF 64
+ + W Q+A + +F
Sbjct: 135 EKFKKLWTQIANALADYDQHLLF 157
>3tzu_A GCVH, glycine cleavage system H protein 1; ssgcid, structural
genomics, seattle structural genomics CEN infectious
disease; 2.30A {Mycobacterium marinum}
Length = 137
Score = 25.4 bits (56), Expect = 3.1
Identities = 11/44 (25%), Positives = 18/44 (40%), Gaps = 12/44 (27%)
Query: 17 EVFAVNKAYLDDPHPKKVNLSVGGCDPTEDQWKQLAQLFKERPS 60
++ VN A +DD P + DP W L+ +P+
Sbjct: 88 QIVEVNTAAVDD--PATIA-----TDPYGAGW-----LYSVQPT 119
>2q0x_A Protein DUF1749, uncharacterized protein; alpha/beta hydrolase
fold, structural genomics, structural G of pathogenic
protozoa consortium; 2.20A {Trypanosoma brucei}
Length = 335
Score = 25.8 bits (56), Expect = 3.2
Identities = 8/47 (17%), Positives = 14/47 (29%), Gaps = 5/47 (10%)
Query: 49 KQLAQLFKERPSLF-VFFDSAYQGFASGDLERDAF----AVRYFAQE 90
LA+ + + V S G D DA + ++
Sbjct: 58 TNLAEELQGDWAFVQVEVPSGKIGSGPQDHAHDAEDVDDLIGILLRD 104
>3aof_A Endoglucanase; glycosyl hydrolase family 5, cellulase, biofuel,
hyperthermo hydrolase; HET: BMA; 1.29A {Thermotoga
maritima} PDB: 3amg_A* 3amc_A 3amd_A 3mmu_A 3mmw_A
3azs_A* 3azr_A* 3azt_A*
Length = 317
Score = 25.6 bits (56), Expect = 3.4
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 44 TEDQWKQLAQLFKERPSLFVF 64
WKQ+A +K+ P F
Sbjct: 111 FLALWKQIADRYKDYPETLFF 131
>3trk_A Nonstructural polyprotein; hydrolase; 2.40A {Chikungunya virus}
Length = 324
Score = 25.7 bits (56), Expect = 3.4
Identities = 14/52 (26%), Positives = 20/52 (38%), Gaps = 12/52 (23%)
Query: 36 LSVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYF 87
L G + QW Q+ Q FKE D AY S ++ + R +
Sbjct: 20 LETAGIKLNDRQWSQIIQAFKE--------DKAY----SPEVALNEICTRMY 59
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural
genomics, structur genomics consortium, SGC, kelch
repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Length = 306
Score = 25.4 bits (56), Expect = 3.9
Identities = 6/29 (20%), Positives = 11/29 (37%), Gaps = 8/29 (27%)
Query: 38 VGGC--------DPTEDQWKQLAQLFKER 58
GG +P + W + F++R
Sbjct: 18 FGGSQPQSCRYFNPKDYSWTDIRCPFEKR 46
>3nco_A Endoglucanase fncel5A; fncel5A, F. nodosum RT17-B1, hydrolase;
1.50A {Fervidobacterium nodosum} PDB: 3rjx_A 3rjy_A*
Length = 320
Score = 25.6 bits (56), Expect = 4.0
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 44 TEDQWKQLAQLFKERPSLFVF 64
+ WKQ+AQ FK+ P F
Sbjct: 119 LVEIWKQVAQAFKDYPDKLFF 139
>1cjx_A 4-hydroxyphenylpyruvate dioxygenase; oxidoreductase, iron; 2.40A
{Pseudomonas fluorescens} SCOP: d.32.1.3 d.32.1.3
Length = 357
Score = 25.5 bits (55), Expect = 4.1
Identities = 13/53 (24%), Positives = 19/53 (35%), Gaps = 9/53 (16%)
Query: 42 DPTEDQWKQLAQLFKERPSLFVFFD----SAYQGFASGDLERDAFAVRYFAQE 90
E + L Q+F E VFF+ GF G+ F + + E
Sbjct: 298 SSVEGDKRLLLQIFSETLMGPVFFEFIQRKGDDGFGEGN-----FKALFESIE 345
>3ndz_A Endoglucanase D; cellotriose, xylanase, carbohydrate binding D
glucanase, hydrolase; HET: CT3; 2.08A {Clostridium
cellulovorans} PDB: 3ndy_A*
Length = 345
Score = 25.4 bits (55), Expect = 4.1
Identities = 6/23 (26%), Positives = 9/23 (39%)
Query: 42 DPTEDQWKQLAQLFKERPSLFVF 64
W Q+A FK+ +F
Sbjct: 122 AQLTKVWTQIANNFKKYGDHLIF 144
>3mxu_A Glycine cleavage system H protein; seattle structural genomics
center for infectious disease, S CAT-scratch disease,
bacteremia; HET: CIT; 1.80A {Bartonella henselae}
Length = 143
Score = 24.9 bits (55), Expect = 4.3
Identities = 10/44 (22%), Positives = 15/44 (34%), Gaps = 12/44 (27%)
Query: 17 EVFAVNKAYLDDPHPKKVNLSVGGCDPTEDQWKQLAQLFKERPS 60
EV +N A + P+ VN + W L+K
Sbjct: 93 EVVEINAALAES--PELVN-----QKAETEGW-----LWKMTVQ 124
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway,
protein-binding, UBI degradation, UBL conjugation
pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Length = 301
Score = 25.3 bits (56), Expect = 5.0
Identities = 9/36 (25%), Positives = 13/36 (36%), Gaps = 13/36 (36%)
Query: 36 LSVGGC-------------DPTEDQWKQLAQLFKER 58
L VGG DP +W L + ++R
Sbjct: 18 LVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKR 53
>3fnb_A Acylaminoacyl peptidase SMU_737; alpha-beta-alpha sandwich, helix
bundle, structural genomics protein structure
initiative; HET: PGE; 2.12A {Streptococcus mutans}
Length = 405
Score = 25.4 bits (55), Expect = 5.0
Identities = 11/53 (20%), Positives = 18/53 (33%), Gaps = 1/53 (1%)
Query: 25 YLDDPHPKKVNLSVGGCDPT-EDQWKQLAQLFKERPSLFVFFDSAYQGFASGD 76
+ + + + VGG D + ED + L E + D QG
Sbjct: 152 IISEDKAQDTLIVVGGGDTSREDLFYMLGYSGWEHDYNVLMVDLPGQGKNPNQ 204
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat
motif, protein binding; HET: MSE; 1.35A {Homo sapiens}
SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A
2z32_A 3ade_A
Length = 308
Score = 25.0 bits (55), Expect = 5.4
Identities = 8/34 (23%), Positives = 12/34 (35%), Gaps = 11/34 (32%)
Query: 36 LSVGGC-----------DPTEDQWKQLAQLFKER 58
+ GG +P+ W +LA L R
Sbjct: 28 YTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPR 61
>3pzt_A Endoglucanase; alpha/beta barrel, glycosyl hydrolase, cellulose
binding, HY; 1.97A {Bacillus subtilis subsp} PDB: 3pzu_A
3pzv_A
Length = 327
Score = 25.2 bits (55), Expect = 5.6
Identities = 7/45 (15%), Positives = 20/45 (44%), Gaps = 14/45 (31%)
Query: 28 DPHPKKVNLSVGGCDPTEDQ------WKQLAQLFKERPSLFVFFD 66
D H + +P +++ +K+++ L+ P+ V ++
Sbjct: 124 DWH------ILNDGNPNQNKEKAKEFFKEMSSLYGNTPN--VIYE 160
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A
{Homo sapiens}
Length = 302
Score = 24.9 bits (55), Expect = 6.1
Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 11/37 (29%)
Query: 33 KVNLSVGGC-----------DPTEDQWKQLAQLFKER 58
K+ + VGG D E++W Q+A+L R
Sbjct: 16 KLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRR 52
>1tvn_A Cellulase, endoglucanase G; glycoside hydrolase, CLAN GH-A, family
5-2; 1.41A {Pseudoalteromonas haloplanktis} SCOP:
c.1.8.3 PDB: 1tvp_A*
Length = 293
Score = 24.8 bits (54), Expect = 6.2
Identities = 2/25 (8%), Positives = 10/25 (40%), Gaps = 2/25 (8%)
Query: 42 DPTEDQWKQLAQLFKERPSLFVFFD 66
++ +A + + + V ++
Sbjct: 109 ATAVRFFEDVATKYGQYDN--VIYE 131
>1onl_A Glycine cleavage system H protein; hybrid barrel-sandwich
structure, structural genomics, riken structural
genomics/proteomics initiative; 2.50A {Thermus
thermophilus} SCOP: b.84.1.1
Length = 128
Score = 24.5 bits (54), Expect = 6.3
Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 12/44 (27%)
Query: 17 EVFAVNKAYLDDPHPKKVNLSVGGCDPTEDQWKQLAQLFKERPS 60
E+ VN A P+ VN DP + W +F+ +P
Sbjct: 75 EIVEVNLALEKT--PELVN-----QDPYGEGW-----IFRLKPR 106
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide
biosynthesis, nucleotide-binding, transferase,
structural genomics, NPPSFA; HET: ADP TYD; 2.10A
{Thermotoga maritima} PDB: 3hjn_A*
Length = 197
Score = 24.8 bits (55), Expect = 6.3
Identities = 10/32 (31%), Positives = 14/32 (43%), Gaps = 2/32 (6%)
Query: 64 FFDS--AYQGFASGDLERDAFAVRYFAQEGFE 93
+ DS AYQGF + + FA +G
Sbjct: 90 YTDSSVAYQGFGRNLGKEIVEELNDFATDGLI 121
>3klr_A Glycine cleavage system H protein; antiparallel beta sheet, beta
sandwich, oxidoreductase; HET: GOL; 0.88A {Bos taurus}
PDB: 2edg_A
Length = 125
Score = 24.5 bits (54), Expect = 6.4
Identities = 14/44 (31%), Positives = 17/44 (38%), Gaps = 12/44 (27%)
Query: 17 EVFAVNKAYLDDPHPKKVNLSVGGCDPTEDQWKQLAQLFKERPS 60
EV +NKA ++ P VN ED W L K S
Sbjct: 71 EVTEINKALAEN--PGLVN-----KSCYEDGW-----LIKMTFS 102
>1b7f_A Protein (SXL-lethal protein), RNA
(5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing
regulation, RNP domain, RNA complex; 2.60A {Drosophila
melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A*
1sxl_A 2sxl_A
Length = 168
Score = 24.8 bits (55), Expect = 6.4
Identities = 10/37 (27%), Positives = 13/37 (35%), Gaps = 1/37 (2%)
Query: 21 VNKAYLDDPHPKKVNLSVGGCDPTEDQWKQLAQLFKE 57
V+ A K NL V T QL +F +
Sbjct: 77 VSYARPGGESIKDTNLYVTNLPRTITD-DQLDTIFGK 112
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 24.5 bits (52), Expect = 6.8
Identities = 5/17 (29%), Positives = 8/17 (47%), Gaps = 1/17 (5%)
Query: 23 KAYLDDPHPK-KVNLSV 38
K Y DD P + ++
Sbjct: 30 KLYADDSAPALAIKATM 46
>1zko_A Glycine cleavage system H protein; TM0212, structural genomi center
for structural genomics, JCSG, protein structure INI
PSI; HET: MSE; 1.65A {Thermotoga maritima} PDB: 2ka7_A
Length = 136
Score = 24.5 bits (54), Expect = 6.9
Identities = 11/44 (25%), Positives = 18/44 (40%), Gaps = 12/44 (27%)
Query: 17 EVFAVNKAYLDDPHPKKVNLSVGGCDPTEDQWKQLAQLFKERPS 60
++ VN+ + P+ +N DP + W LFK S
Sbjct: 84 KIVEVNEKLDTE--PELIN-----KDPEGEGW-----LFKMEIS 115
>1hpc_A H protein of the glycine cleavage system; transit peptide; HET:
LPA; 2.00A {Pisum sativum} SCOP: b.84.1.1 PDB: 1dxm_A*
1htp_A*
Length = 131
Score = 24.5 bits (54), Expect = 7.6
Identities = 12/44 (27%), Positives = 16/44 (36%), Gaps = 12/44 (27%)
Query: 17 EVFAVNKAYLDDPHPKKVNLSVGGCDPTEDQWKQLAQLFKERPS 60
EV VN P +N P ED W + K +P+
Sbjct: 75 EVIEVNTGLTGK--PGLIN-----SSPYEDGW-----MIKIKPT 106
>2jep_A Xyloglucanase; family 5, plant cell WALL, hydrolase; 1.4A
{Paenibacillus pabuli} PDB: 2jeq_A*
Length = 395
Score = 24.8 bits (53), Expect = 8.3
Identities = 5/21 (23%), Positives = 9/21 (42%)
Query: 44 TEDQWKQLAQLFKERPSLFVF 64
+ W+Q+A F +F
Sbjct: 157 YKKVWQQIATKFSNYNDRLIF 177
>3a7l_A H-protein, glycine cleavage system H protein; lipoic acid, lipoyl,
transport protein; 1.30A {Escherichia coli} PDB: 3a7a_B
3ab9_A* 3a8i_E* 3a8j_E* 3a8k_E*
Length = 128
Score = 24.1 bits (53), Expect = 8.6
Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 12/44 (27%)
Query: 17 EVFAVNKAYLDDPHPKKVNLSVGGCDPTEDQWKQLAQLFKERPS 60
E+ AVN A D P+ VN +P W +FK + S
Sbjct: 76 EIVAVNDALSDS--PELVN-----SEPYAGGW-----IFKIKAS 107
>1vjz_A Endoglucanase; TM1752, structural genomics, JCSG, PSI, prote
structure initiative, joint center for structural
genomics; 2.05A {Thermotoga maritima} SCOP: c.1.8.3
Length = 341
Score = 24.5 bits (53), Expect = 8.7
Identities = 5/25 (20%), Positives = 11/25 (44%)
Query: 42 DPTEDQWKQLAQLFKERPSLFVFFD 66
+ W +A+ +K S + F+
Sbjct: 123 EAFIHHWSFIARRYKGISSTHLSFN 147
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex,
AU-rich element, transcription/RNA complex; 1.80A {Homo
sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H
1d8z_A 1d9a_A 3hi9_A
Length = 167
Score = 24.5 bits (54), Expect = 8.7
Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 21 VNKAYLDDPHPKKVNLSVGGCDPTEDQWKQLAQLFKE 57
V+ A + NL V G T Q K+L QLF +
Sbjct: 76 VSYARPSSASIRDANLYVSGLPKTMTQ-KELEQLFSQ 111
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.136 0.410
Gapped
Lambda K H
0.267 0.0791 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,637,098
Number of extensions: 85017
Number of successful extensions: 309
Number of sequences better than 10.0: 1
Number of HSP's gapped: 285
Number of HSP's successfully gapped: 69
Length of query: 109
Length of database: 6,701,793
Length adjustment: 73
Effective length of query: 36
Effective length of database: 4,663,560
Effective search space: 167888160
Effective search space used: 167888160
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.3 bits)