RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy207
(109 letters)
>d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus
scrofa), cytosolic form [TaxId: 9823]}
Length = 412
Score = 53.8 bits (128), Expect = 2e-10
Identities = 16/38 (42%), Positives = 23/38 (60%)
Query: 2 STESSFSSVQQGPPIEVFAVNKAYLDDPHPKKVNLSVG 39
+ S F+ V Q P+ VF + + +DP P+KVNL VG
Sbjct: 1 APPSVFAEVPQAQPVLVFKLIADFREDPDPRKVNLGVG 38
>d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken
(Gallus gallus), mitochondria [TaxId: 9031]}
Length = 401
Score = 52.7 bits (125), Expect = 6e-10
Identities = 15/35 (42%), Positives = 22/35 (62%)
Query: 5 SSFSSVQQGPPIEVFAVNKAYLDDPHPKKVNLSVG 39
S +S V+ GPP + V +A+ D + KK+NL VG
Sbjct: 2 SWWSHVEMGPPDPILGVTEAFKRDTNSKKMNLGVG 36
>d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT
{Escherichia coli [TaxId: 562]}
Length = 396
Score = 50.0 bits (118), Expect = 5e-09
Identities = 18/92 (19%), Positives = 28/92 (30%), Gaps = 13/92 (14%)
Query: 7 FSSVQQGPPIEVFAVNKAYLDDPHPKKVNLSVG------GCDPTEDQWKQLAQLFKERPS 60
F ++ P + + + D P K+NL +G G P K+ Q E +
Sbjct: 2 FENITAAPADPILGLADLFRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENET 61
Query: 61 LFVFFDSAYQGFASGDLE-RDAFAVRYFAQEG 91
Y G G E F +
Sbjct: 62 TK-----NYLGID-GIPEFGRCTQELLFGKGS 87
Score = 38.4 bits (88), Expect = 5e-05
Identities = 33/70 (47%), Positives = 41/70 (58%), Gaps = 2/70 (2%)
Query: 39 GGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQ 98
G DPT +QW+ LAQL FD AYQGFA G E DA +R FA E + +
Sbjct: 185 TGIDPTLEQWQTLAQLSV-EKGWLPLFDFAYQGFARGL-EEDAEGLRAFAAMHKELIVAS 242
Query: 99 SFAKNFGLYS 108
S++KNFGLY+
Sbjct: 243 SYSKNFGLYN 252
>d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's
yeast (Saccharomyces cerevisiae), cytosolic form
[TaxId: 4932]}
Length = 412
Score = 49.2 bits (116), Expect = 9e-09
Identities = 10/35 (28%), Positives = 20/35 (57%)
Query: 5 SSFSSVQQGPPIEVFAVNKAYLDDPHPKKVNLSVG 39
+ F++++ PP +F + + Y D KV+L +G
Sbjct: 3 TLFNNIELLPPDALFGIKQRYGQDQRATKVDLGIG 37
>d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT
{Paracoccus denitrificans [TaxId: 266]}
Length = 394
Score = 48.5 bits (114), Expect = 2e-08
Identities = 8/33 (24%), Positives = 17/33 (51%)
Query: 7 FSSVQQGPPIEVFAVNKAYLDDPHPKKVNLSVG 39
+++ P ++ A+ + DP K++L VG
Sbjct: 2 LGNLKPQAPDKILALMGEFRADPRQGKIDLGVG 34
>d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT
{Escherichia coli [TaxId: 562]}
Length = 397
Score = 48.4 bits (114), Expect = 2e-08
Identities = 19/100 (19%), Positives = 31/100 (31%), Gaps = 14/100 (14%)
Query: 7 FSSVQQGPPIEVFAVNKAYLDDPHPKKVNLSVGGC-DPTEDQW------KQLAQLFKERP 59
F V + + + + +DP KVNLS+G + + A+L +
Sbjct: 2 FQKVDAYAGDPILTLMERFKEDPRSDKVNLSIGLYYNEDGIIPQLQAVAEAEARLNAQPH 61
Query: 60 SLFVFFDSAYQGFASGDLE-RDAFAVRYFAQEGFEFLCSQ 98
S Y G R A A F + +
Sbjct: 62 G-----ASLYLPME-GLNCYRHAIAPLLFGADHPVLKQQR 95
Score = 34.2 bits (77), Expect = 0.002
Identities = 32/71 (45%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 39 GGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFASGDLERDAFAVRYFAQEGFEFLCSQ 98
G D T DQW + ++ K R L F D AYQGF +G E DA+A+R A G L S
Sbjct: 186 TGADLTNDQWDAVIEILKARE-LIPFLDIAYQGFGAGM-EEDAYAIRAIASAGLPALVSN 243
Query: 99 SFAKNFGLYSR 109
SF+K F LY
Sbjct: 244 SFSKIFSLYGE 254
>d2gm8a1 a.132.1.3 (A:2-212) TenA homolog PAE0170 {Archaeon
Pyrobaculum aerophilum [TaxId: 13773]}
Length = 211
Score = 25.5 bits (55), Expect = 1.7
Identities = 12/49 (24%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
Query: 25 YLDDPHPKKVNLSVGGCDPTEDQWKQLAQLFKERPSLFV-FFDSAYQGF 72
YL + V D + ++L FKE + F+ +AY+G
Sbjct: 163 YLSPEYRGLVERLRAVLDSSGLSAEELWPYFKEASLYELEFWQAAYEGH 211
>d2bz2a1 d.58.7.1 (A:35-113) Negative elongation factor E, NELF-E
{Human (Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 23.8 bits (51), Expect = 3.0
Identities = 11/44 (25%), Positives = 15/44 (34%), Gaps = 4/44 (9%)
Query: 31 PKKVN-LSVGGCDPTEDQWKQLAQLFKERPSLFVFFDSAYQGFA 73
P+K N L V G D T L F ++ + A
Sbjct: 2 PRKGNTLYVYGEDMTPT---LLRGAFSPFGNIIDLSMDPPRNCA 42
>d1atia2 d.104.1.1 (A:1-394) Glycyl-tRNA synthetase (GlyRS) {Thermus
thermophilus [TaxId: 274]}
Length = 394
Score = 24.2 bits (52), Expect = 4.9
Identities = 5/48 (10%), Positives = 20/48 (41%)
Query: 1 MSTESSFSSVQQGPPIEVFAVNKAYLDDPHPKKVNLSVGGCDPTEDQW 48
++ ++ + + + + KA+ ++ P+ V + E ++
Sbjct: 195 VNFKNVLDATSRKLGFGIAQIGKAFRNEITPRNFIFRVREFEQMEIEY 242
>d1udda_ a.132.1.3 (A:) Hypothetical transcriptional regulator
PH1161 {Pyrococcus horikoshii [TaxId: 53953]}
Length = 215
Score = 23.6 bits (50), Expect = 7.5
Identities = 5/29 (17%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 44 TEDQWKQLAQLFKERPSLFV-FFDSAYQG 71
+ +L ++F + F++ A++G
Sbjct: 186 GHSGYDRLRRIFITGSKFELAFWEMAWRG 214
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.136 0.410
Gapped
Lambda K H
0.267 0.0433 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 398,695
Number of extensions: 16644
Number of successful extensions: 59
Number of sequences better than 10.0: 1
Number of HSP's gapped: 59
Number of HSP's successfully gapped: 15
Length of query: 109
Length of database: 2,407,596
Length adjustment: 68
Effective length of query: 41
Effective length of database: 1,473,956
Effective search space: 60432196
Effective search space used: 60432196
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.6 bits)