BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2071
(302 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3KX2|B Chain B, Crystal Structure Of Prp43p In Complex With Adp
pdb|3KX2|A Chain A, Crystal Structure Of Prp43p In Complex With Adp
Length = 767
Score = 285 bits (729), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 138/212 (65%), Positives = 171/212 (80%), Gaps = 1/212 (0%)
Query: 38 QVNPFTGYPYTPRYHELHRKRITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQW 97
++NPFTG +TP+Y ++ + R LPV R EF+ L NQ +V VGETGSGKTTQIPQ+
Sbjct: 70 KINPFTGREFTPKYVDILKIRRELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQIPQF 129
Query: 98 CV-EYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRFEDCSSPKTVLK 156
+ + + VACTQPRRVAAMSVAQRV+EEMD +LG+EVGYSIRFE+ +S KT+LK
Sbjct: 130 VLFDEMPHLENTQVACTQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFENKTSNKTILK 189
Query: 157 YMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILMGVLKEVIKQRADLKLVIMSAT 216
YMTDGMLLRE M D L Y I+LDEAHERTLATDILMG+LK+V+K+R DLK++IMSAT
Sbjct: 190 YMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSAT 249
Query: 217 LDAGKFQQYFDNAPLMNVPGRTHPVEIFYTPE 248
LDA KFQ+YF++APL+ VPGRT+PVE++YTPE
Sbjct: 250 LDAEKFQRYFNDAPLLAVPGRTYPVELYYTPE 281
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 28/40 (70%), Positives = 31/40 (77%)
Query: 257 LPQCFTRPNEAKKAADDAKMRFAHIDGDHLTLLNVYHAFK 296
+P F RP + KK ADDAK FAH DGDH+TLLNVYHAFK
Sbjct: 551 VPNVFIRPTKDKKRADDAKNIFAHPDGDHITLLNVYHAFK 590
>pdb|2XAU|A Chain A, Crystal Structure Of The Prp43p Deah-Box Rna Helicase In
Complex With Adp
pdb|2XAU|B Chain B, Crystal Structure Of The Prp43p Deah-Box Rna Helicase In
Complex With Adp
Length = 773
Score = 285 bits (729), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 138/212 (65%), Positives = 171/212 (80%), Gaps = 1/212 (0%)
Query: 38 QVNPFTGYPYTPRYHELHRKRITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQW 97
++NPFTG +TP+Y ++ + R LPV R EF+ L NQ +V VGETGSGKTTQIPQ+
Sbjct: 70 KINPFTGREFTPKYVDILKIRRELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQIPQF 129
Query: 98 CV-EYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRFEDCSSPKTVLK 156
+ + + VACTQPRRVAAMSVAQRV+EEMD +LG+EVGYSIRFE+ +S KT+LK
Sbjct: 130 VLFDEMPHLENTQVACTQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFENKTSNKTILK 189
Query: 157 YMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILMGVLKEVIKQRADLKLVIMSAT 216
YMTDGMLLRE M D L Y I+LDEAHERTLATDILMG+LK+V+K+R DLK++IMSAT
Sbjct: 190 YMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSAT 249
Query: 217 LDAGKFQQYFDNAPLMNVPGRTHPVEIFYTPE 248
LDA KFQ+YF++APL+ VPGRT+PVE++YTPE
Sbjct: 250 LDAEKFQRYFNDAPLLAVPGRTYPVELYYTPE 281
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 28/40 (70%), Positives = 31/40 (77%)
Query: 257 LPQCFTRPNEAKKAADDAKMRFAHIDGDHLTLLNVYHAFK 296
+P F RP + KK ADDAK FAH DGDH+TLLNVYHAFK
Sbjct: 551 VPNVFIRPTKDKKRADDAKNIFAHPDGDHITLLNVYHAFK 590
>pdb|3LLM|A Chain A, Crystal Structure Analysis Of A Rna Helicase
pdb|3LLM|B Chain B, Crystal Structure Analysis Of A Rna Helicase
Length = 235
Score = 124 bits (311), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 66/190 (34%), Positives = 116/190 (61%), Gaps = 9/190 (4%)
Query: 52 HELH---RKRITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVE---YSKSV 105
H+L ++R LPV ++ +E + ++QN +++ G TG GKTTQ+PQ+ ++ +
Sbjct: 48 HDLQAILQERELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRA 107
Query: 106 GAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRFEDC-SSPKTVLKYMTDGMLL 164
+ TQPRR++A+SVA+RV+ E + G+ GYS+RFE P + + T G+LL
Sbjct: 108 AECNIVVTQPRRISAVSVAERVAFERGEEPGKSCGYSVRFESILPRPHASIXFCTVGVLL 167
Query: 165 REGMSDPMLENYQVILLDEAHERTLATDILMGVLKEVIKQRADLKLVIMSATLDAGKFQQ 224
R+ + + +++DE HER + TD L+ VL++V++ ++++V+ SAT+D F +
Sbjct: 168 RK--LEAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPEVRIVLXSATIDTSXFCE 225
Query: 225 YFDNAPLMNV 234
YF N P++ V
Sbjct: 226 YFFNCPIIEV 235
>pdb|3I4U|A Chain A, Crystal Structure Analysis Of A Helicase Associated Domain
Length = 270
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 24/36 (66%)
Query: 261 FTRPNEAKKAADDAKMRFAHIDGDHLTLLNVYHAFK 296
F RP + + AD K +F +GDHLTLL VY+++K
Sbjct: 84 FYRPKDKQALADQKKAKFHQTEGDHLTLLAVYNSWK 119
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 34.7 bits (78), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 58/245 (23%), Positives = 96/245 (39%), Gaps = 51/245 (20%)
Query: 37 LQVNPFTGYPYTPRYHELHRKRITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQ 96
L F G H + R +P+F+ +F + LVG +GSGK+T +
Sbjct: 333 LNEKSFQGALEFKNVHFAYPARPEVPIFQ---DFSLSIPSGSVTALVGPSGSGKSTVLSL 389
Query: 97 WCVEYSKSVGAKAVACTQPRRVAAMSVAQR---VSEE---MDCQLGQEVGYS-------- 142
Y + G ++ R++ + + + VS+E C + + + Y
Sbjct: 390 LLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDPSSVT 449
Query: 143 ----------------IR-----FEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILL 181
IR F K VL ++ G R ++ +L+N +++LL
Sbjct: 450 AEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVL--LSGGQKQRIAIARALLKNPKILLL 507
Query: 182 DEA-------HERTL--ATDILM-GVLKEVIKQR-ADLKLVIMSATLDAGKFQQYFDNAP 230
DEA +E + A D LM G VI R + +K M A LD GK +Y +
Sbjct: 508 DEATSALDAENEYLVQEALDRLMDGRTVLVIAHRLSTIKNANMVAVLDQGKITEYGKHEE 567
Query: 231 LMNVP 235
L++ P
Sbjct: 568 LLSKP 572
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 52/247 (21%), Positives = 94/247 (38%), Gaps = 55/247 (22%)
Query: 37 LQVNPFTGYPYTPRYHELHRKRITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQ 96
L F G H + R +P+F+ +F + LVG +GSGK+T +
Sbjct: 364 LNEKSFQGALEFKNVHFAYPARPEVPIFQ---DFSLSIPSGSVTALVGPSGSGKSTVLSL 420
Query: 97 WCVEYSKSVGAKAVACTQPRRVAAMSVAQR---VSEE---MDCQLGQEVGYS-------- 142
Y + G ++ R++ + + + VS+E C + + + Y
Sbjct: 421 LLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDPSSVT 480
Query: 143 ----------------IR-----FEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILL 181
IR F K VL ++ G R ++ +L+N +++LL
Sbjct: 481 AEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVL--LSGGQKQRIAIARALLKNPKILLL 538
Query: 182 DEAHERTLATDILMGVLKEVIKQRADLKLVI-------------MSATLDAGKFQQYFDN 228
DEA A + + ++E + + D + V+ M A LD GK +Y +
Sbjct: 539 DEATSALDAENEYL--VQEALDRLMDGRTVLVIAHHLSTIKNANMVAVLDQGKITEYGKH 596
Query: 229 APLMNVP 235
L++ P
Sbjct: 597 EELLSKP 603
>pdb|1UAA|A Chain A, E. Coli Rep HelicaseDNA COMPLEX
pdb|1UAA|B Chain B, E. Coli Rep HelicaseDNA COMPLEX
Length = 673
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 7/62 (11%)
Query: 79 CIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQE 138
C+VL G GSGKT I + G +A R +AA++ + + EM ++GQ
Sbjct: 18 CLVLAG-AGSGKTRVITNKIAHLIRGCGYQA------RHIAAVTFTNKAAREMKERVGQT 70
Query: 139 VG 140
+G
Sbjct: 71 LG 72
>pdb|2W4A|M Chain M, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W4G|M Chain M, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Stretch Step
pdb|2W4H|M Chain M, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Release Step
Length = 840
Score = 32.3 bits (72), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 9/77 (11%)
Query: 39 VNPFTGYP-YTPRYHELHR--KRITLP-----VFEYRTEFMTLLAQNQCIVLVGETGSGK 90
VNP+ P Y P+ +R KR P + + +FM +NQ I++ GE+G+GK
Sbjct: 123 VNPYKWLPVYNPKVVLAYRGKKRQEAPPHIFSISDNAYQFMLTDRENQSILITGESGAGK 182
Query: 91 TTQIPQWCVEYSKSVGA 107
T + ++Y ++ A
Sbjct: 183 TVNTKR-VIQYFATIAA 198
>pdb|4DB1|A Chain A, Cardiac Human Myosin S1dc, Beta Isoform Complexed With
Mn-Amppnp
pdb|4DB1|B Chain B, Cardiac Human Myosin S1dc, Beta Isoform Complexed With
Mn-Amppnp
Length = 783
Score = 32.0 bits (71), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 9/77 (11%)
Query: 39 VNPFTGYP-YTPRYHELHR--KRITLP-----VFEYRTEFMTLLAQNQCIVLVGETGSGK 90
VNP+ P YTP +R KR P + + ++M +NQ I++ GE+G+GK
Sbjct: 125 VNPYKWLPVYTPEVVAAYRGKKRSEAPPHIFSISDNAYQYMLTDRENQSILITGESGAGK 184
Query: 91 TTQIPQWCVEYSKSVGA 107
T + ++Y + A
Sbjct: 185 TVNTKR-VIQYFAVIAA 200
>pdb|1VIM|A Chain A, Crystal Structure Of An Hypothetical Protein
pdb|1VIM|B Chain B, Crystal Structure Of An Hypothetical Protein
pdb|1VIM|C Chain C, Crystal Structure Of An Hypothetical Protein
pdb|1VIM|D Chain D, Crystal Structure Of An Hypothetical Protein
Length = 200
Score = 32.0 bits (71), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 81 VLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPR 116
VLVG +GSG+TT + + +K +G+K VA T R
Sbjct: 92 VLVGISGSGETTSVVNIS-KKAKDIGSKLVAVTGKR 126
>pdb|2MYS|A Chain A, Myosin Subfragment-1, Alpha Carbon Coordinates Only For
The Two Light Chains
Length = 843
Score = 31.2 bits (69), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 9/79 (11%)
Query: 39 VNPFTGYP-YTPRYHELHR--KRITLP-----VFEYRTEFMTLLAQNQCIVLVGETGSGK 90
VNP+ P Y P +R KR P + + +FM +NQ I++ GE+G+GK
Sbjct: 126 VNPYXWLPVYNPXVVLAYRGKKRQEAPPHIFSISDNAYQFMLTDRENQSILITGESGAGK 185
Query: 91 TTQIPQWCVEYSKSVGAKA 109
T + ++Y ++ A
Sbjct: 186 TVNTXR-VIQYFATIAASG 203
>pdb|1G8X|A Chain A, Structure Of A Genetically Engineered Molecular Motor
pdb|1G8X|B Chain B, Structure Of A Genetically Engineered Molecular Motor
Length = 1010
Score = 30.8 bits (68), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 13/83 (15%)
Query: 39 VNPFTGYP-YTPRYHELHRKR---------ITLPVFEYRTEFMTLLAQNQCIVLVGETGS 88
VNPF P YT ++ + R + YR+ M QNQ +++ GE+G+
Sbjct: 126 VNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRS--MLDDRQNQSLLITGESGA 183
Query: 89 GKTTQIPQWCVEYSKSVGAKAVA 111
GKT + ++Y SV + A
Sbjct: 184 GKTENTKK-VIQYLASVAGRNQA 205
>pdb|1M8Q|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|S Chain S, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
Length = 840
Score = 30.8 bits (68), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 9/79 (11%)
Query: 39 VNPFTGYP-YTPRYHELHR--KRITLP-----VFEYRTEFMTLLAQNQCIVLVGETGSGK 90
VNP+ P Y P +R KR P + + +FM +NQ I++ GE+G+GK
Sbjct: 123 VNPYXWLPVYNPXVVLAYRGKKRQEAPPHIFSISDNAYQFMLTDRENQSILITGESGAGK 182
Query: 91 TTQIPQWCVEYSKSVGAKA 109
T + ++Y ++ A
Sbjct: 183 TVNTXR-VIQYFATIAASG 200
>pdb|1W9I|A Chain A, Myosin Ii Dictyostelium Discoideum Motor Domain S456y
Bound With Mgadp-Befx
Length = 770
Score = 30.8 bits (68), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 13/83 (15%)
Query: 39 VNPFTGYP-YTPRYHELHRKR---------ITLPVFEYRTEFMTLLAQNQCIVLVGETGS 88
VNPF P YT ++ + R + YR+ M QNQ +++ GE+G+
Sbjct: 126 VNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRS--MLDDRQNQSLLITGESGA 183
Query: 89 GKTTQIPQWCVEYSKSVGAKAVA 111
GKT + ++Y SV + A
Sbjct: 184 GKTENTKK-VIQYLASVAGRNQA 205
>pdb|1W9K|A Chain A, Dictyostelium Discoideum Myosin Ii Motor Domain S456e With
Bound Mgadp-Befx
Length = 770
Score = 30.8 bits (68), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 13/83 (15%)
Query: 39 VNPFTGYP-YTPRYHELHRKR---------ITLPVFEYRTEFMTLLAQNQCIVLVGETGS 88
VNPF P YT ++ + R + YR+ M QNQ +++ GE+G+
Sbjct: 126 VNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRS--MLDDRQNQSLLITGESGA 183
Query: 89 GKTTQIPQWCVEYSKSVGAKAVA 111
GKT + ++Y SV + A
Sbjct: 184 GKTENTKK-VIQYLASVAGRNQA 205
>pdb|1W9J|A Chain A, Myosin Ii Dictyostelium Discoideum Motor Domain S456y
Bound With Mgadp-Alf4
Length = 770
Score = 30.8 bits (68), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 13/83 (15%)
Query: 39 VNPFTGYP-YTPRYHELHRKR---------ITLPVFEYRTEFMTLLAQNQCIVLVGETGS 88
VNPF P YT ++ + R + YR+ M QNQ +++ GE+G+
Sbjct: 126 VNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRS--MLDDRQNQSLLITGESGA 183
Query: 89 GKTTQIPQWCVEYSKSVGAKAVA 111
GKT + ++Y SV + A
Sbjct: 184 GKTENTKK-VIQYLASVAGRNQA 205
>pdb|1W9L|A Chain A, Myosin Ii Dictyostelium Discoideum Motor Domain S456e
Bound With Mgadp-Alf4
Length = 770
Score = 30.8 bits (68), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 13/83 (15%)
Query: 39 VNPFTGYP-YTPRYHELHRKR---------ITLPVFEYRTEFMTLLAQNQCIVLVGETGS 88
VNPF P YT ++ + R + YR+ M QNQ +++ GE+G+
Sbjct: 126 VNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRS--MLDDRQNQSLLITGESGA 183
Query: 89 GKTTQIPQWCVEYSKSVGAKAVA 111
GKT + ++Y SV + A
Sbjct: 184 GKTENTKK-VIQYLASVAGRNQA 205
>pdb|3MNQ|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With
Adp- Metavanadate And Resveratrol
Length = 788
Score = 30.8 bits (68), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 13/83 (15%)
Query: 39 VNPFTGYP-YTPRYHELHRKR---------ITLPVFEYRTEFMTLLAQNQCIVLVGETGS 88
VNPF P YT ++ + R + YR+ M QNQ +++ GE+G+
Sbjct: 137 VNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRS--MLDDRQNQSLLITGESGA 194
Query: 89 GKTTQIPQWCVEYSKSVGAKAVA 111
GKT + ++Y SV + A
Sbjct: 195 GKTENTKK-VIQYLASVAGRNQA 216
>pdb|2JHR|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With
Adp-Metavanadate And Pentabromopseudilin
pdb|2JJ9|A Chain A, Crystal Structure Of Myosin-2 In Complex With Adp-
Metavanadate
pdb|3MJX|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With
Adp- Metavanadate And Blebbistatin
Length = 788
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 13/83 (15%)
Query: 39 VNPFTGYP-YTPRYHELHRKR---------ITLPVFEYRTEFMTLLAQNQCIVLVGETGS 88
VNPF P YT ++ + R + YR+ M QNQ +++ GE+G+
Sbjct: 137 VNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRS--MLDDRQNQSLLITGESGA 194
Query: 89 GKTTQIPQWCVEYSKSVGAKAVA 111
GKT + ++Y SV + A
Sbjct: 195 GKTENTKK-VIQYLASVAGRNQA 216
>pdb|1LVK|A Chain A, X-Ray Crystal Structure Of The Mg (Dot) 2'(3')-O-(N-
Methylanthraniloyl) Nucleotide Bound To Dictyostelium
Discoideum Myosin Motor Domain
Length = 762
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 13/83 (15%)
Query: 39 VNPFTGYP-YTPRYHELHRKR---------ITLPVFEYRTEFMTLLAQNQCIVLVGETGS 88
VNPF P YT ++ + R + YR+ M QNQ +++ GE+G+
Sbjct: 126 VNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRS--MLDDRQNQSLLITGESGA 183
Query: 89 GKTTQIPQWCVEYSKSVGAKAVA 111
GKT + ++Y SV + A
Sbjct: 184 GKTENTKK-VIQYLASVAGRNQA 205
>pdb|1JWY|A Chain A, Crystal Structure Of The Dynamin A Gtpase Domain Complexed
With Gdp, Determined As Myosin Fusion
pdb|1JX2|A Chain A, Crystal Structure Of The Nucleotide-Free Dynamin A Gtpase
Domain, Determined As Myosin Fusion
Length = 776
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 13/83 (15%)
Query: 39 VNPFTGYP-YTPRYHELHRKR---------ITLPVFEYRTEFMTLLAQNQCIVLVGETGS 88
VNPF P YT ++ + R + YR+ M QNQ +++ GE+G+
Sbjct: 137 VNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRS--MLDDRQNQSLLITGESGA 194
Query: 89 GKTTQIPQWCVEYSKSVGAKAVA 111
GKT + ++Y SV + A
Sbjct: 195 GKTENTKK-VIQYLASVAGRNQA 216
>pdb|2XEL|A Chain A, Molecular Mechanism Of Pentachloropseudilin Mediated
Inhibition Of Myosin Motor Activity
pdb|4AE3|A Chain A, Crystal Structure Of Ammosamide 272:myosin-2 Motor Domain
Complex
Length = 776
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 13/83 (15%)
Query: 39 VNPFTGYP-YTPRYHELHRKR---------ITLPVFEYRTEFMTLLAQNQCIVLVGETGS 88
VNPF P YT ++ + R + YR+ M QNQ +++ GE+G+
Sbjct: 125 VNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRS--MLDDRQNQSLLITGESGA 182
Query: 89 GKTTQIPQWCVEYSKSVGAKAVA 111
GKT + ++Y SV + A
Sbjct: 183 GKTENTKK-VIQYLASVAGRNQA 204
>pdb|2AKA|A Chain A, Structure Of The Nucleotide-Free Myosin Ii Motor Domain
From Dictyostelium Discoideum Fused To The Gtpase Domain
Of Dynamin 1 From Rattus Norvegicus
Length = 776
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 13/83 (15%)
Query: 39 VNPFTGYP-YTPRYHELHRKR---------ITLPVFEYRTEFMTLLAQNQCIVLVGETGS 88
VNPF P YT ++ + R + YR+ M QNQ +++ GE+G+
Sbjct: 137 VNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRS--MLDDRQNQSLLITGESGA 194
Query: 89 GKTTQIPQWCVEYSKSVGAKAVA 111
GKT + ++Y SV + A
Sbjct: 195 GKTENTKK-VIQYLASVAGRNQA 216
>pdb|2Y9E|X Chain X, Structural Basis For The Allosteric Interference Of Myosin
Function By Mutants G680a And G680v Of Dictyostelium
Myosin-2
Length = 758
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 13/83 (15%)
Query: 39 VNPFTGYP-YTPRYHELHRKR---------ITLPVFEYRTEFMTLLAQNQCIVLVGETGS 88
VNPF P YT ++ + R + YR+ M QNQ +++ GE+G+
Sbjct: 125 VNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRS--MLDDRQNQSLLITGESGA 182
Query: 89 GKTTQIPQWCVEYSKSVGAKAVA 111
GKT + ++Y SV + A
Sbjct: 183 GKTENTKK-VIQYLASVAGRNQA 204
>pdb|2Y0R|X Chain X, Structural Basis For The Allosteric Interference Of Myosin
Function By Mutants G680a And G680v Of Dictyostelium
Myosin-2
pdb|2Y8I|X Chain X, Structural Basis For The Allosteric Interference Of Myosin
Function By Mutants G680a And G680v Of Dictyostelium
Myosin-2
Length = 758
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 13/83 (15%)
Query: 39 VNPFTGYP-YTPRYHELHRKR---------ITLPVFEYRTEFMTLLAQNQCIVLVGETGS 88
VNPF P YT ++ + R + YR+ M QNQ +++ GE+G+
Sbjct: 125 VNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRS--MLDDRQNQSLLITGESGA 182
Query: 89 GKTTQIPQWCVEYSKSVGAKAVA 111
GKT + ++Y SV + A
Sbjct: 183 GKTENTKK-VIQYLASVAGRNQA 204
>pdb|1MMD|A Chain A, Truncated Head Of Myosin From Dictyostelium Discoideum
Complexed With Mgadp-Bef3
pdb|1MND|A Chain A, Truncated Head Of Myosin From Dictyostelium Discoideum
Complexed With Mgadp-Alf4
pdb|1MNE|A Chain A, Truncated Head Of Myosin From Dictyostelium Discoideum
Complexed With Mg-Pyrophosphate
pdb|1VOM|A Chain A, Complex Between Dictyostelium Myosin And Mgadp And
Vanadate At 1.9a Resolution
Length = 762
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 13/83 (15%)
Query: 39 VNPFTGYP-YTPRYHELHRKR---------ITLPVFEYRTEFMTLLAQNQCIVLVGETGS 88
VNPF P YT ++ + R + YR+ M QNQ +++ GE+G+
Sbjct: 126 VNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRS--MLDDRQNQSLLITGESGA 183
Query: 89 GKTTQIPQWCVEYSKSVGAKAVA 111
GKT + ++Y SV + A
Sbjct: 184 GKTENTKK-VIQYLASVAGRNQA 205
>pdb|1MMG|A Chain A, X-Ray Structures Of The Mgadp, Mgatpgammas, And Mgamppnp
Complexes Of The Dictyostelium Discoideum Myosin Motor
Domain
Length = 762
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 13/83 (15%)
Query: 39 VNPFTGYP-YTPRYHELHRKR---------ITLPVFEYRTEFMTLLAQNQCIVLVGETGS 88
VNPF P YT ++ + R + YR+ M QNQ +++ GE+G+
Sbjct: 126 VNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRS--MLDDRQNQSLLITGESGA 183
Query: 89 GKTTQIPQWCVEYSKSVGAKAVA 111
GKT + ++Y SV + A
Sbjct: 184 GKTENTKK-VIQYLASVAGRNQA 205
>pdb|3MYH|X Chain X, Insights Into The Importance Of Hydrogen Bonding In The
Gamma- Phosphate Binding Pocket Of Myosin: Structural
And Functional Studies Of Ser236
pdb|3MYK|X Chain X, Insights Into The Importance Of Hydrogen Bonding In The
Gamma- Phosphate Binding Pocket Of Myosin: Structural
And Functional Studies Of Ser236
pdb|3MYL|X Chain X, Insights Into The Importance Of Hydrogen Bonding In The
Gamma- Phosphate Binding Pocket Of Myosin: Structural
And Functional Studies Of Ser236
Length = 762
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 13/83 (15%)
Query: 39 VNPFTGYP-YTPRYHELHRKR---------ITLPVFEYRTEFMTLLAQNQCIVLVGETGS 88
VNPF P YT ++ + R + YR+ M QNQ +++ GE+G+
Sbjct: 126 VNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRS--MLDDRQNQSLLITGESGA 183
Query: 89 GKTTQIPQWCVEYSKSVGAKAVA 111
GKT + ++Y SV + A
Sbjct: 184 GKTENTKK-VIQYLASVAGRNQA 205
>pdb|1MMA|A Chain A, X-Ray Structures Of The Mgadp, Mgatpgammas, And Mgamppnp
Complexes Of The Dictyostelium Discoideum Myosin Motor
Domain
Length = 762
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 13/83 (15%)
Query: 39 VNPFTGYP-YTPRYHELHRKR---------ITLPVFEYRTEFMTLLAQNQCIVLVGETGS 88
VNPF P YT ++ + R + YR+ M QNQ +++ GE+G+
Sbjct: 126 VNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRS--MLDDRQNQSLLITGESGA 183
Query: 89 GKTTQIPQWCVEYSKSVGAKAVA 111
GKT + ++Y SV + A
Sbjct: 184 GKTENTKK-VIQYLASVAGRNQA 205
>pdb|1FMV|A Chain A, Crystal Structure Of The Apo Motor Domain Of
Dictyostellium Myosin Ii
pdb|1FMW|A Chain A, Crystal Structure Of The Mgatp Complex For The Motor
Domain Of Dictyostelium Myosin Ii
Length = 761
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 13/83 (15%)
Query: 39 VNPFTGYP-YTPRYHELHRKR---------ITLPVFEYRTEFMTLLAQNQCIVLVGETGS 88
VNPF P YT ++ + R + YR+ M QNQ +++ GE+G+
Sbjct: 126 VNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRS--MLDDRQNQSLLITGESGA 183
Query: 89 GKTTQIPQWCVEYSKSVGAKAVA 111
GKT + ++Y SV + A
Sbjct: 184 GKTENTKK-VIQYLASVAGRNQA 205
>pdb|1D0X|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With M-Nitrophenyl Aminoethyldiphosphate
Beryllium Trifluoride.
pdb|1D0Y|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With O-Nitrophenyl Aminoethyldiphosphate
Beryllium Fluoride.
pdb|1D0Z|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With P-Nitrophenyl Aminoethyldiphosphate
Beryllium Trifluoride.
pdb|1D1A|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With O,P-Dinitrophenyl Aminoethyldiphosphate
Beryllium Trifluoride.
pdb|1D1B|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With O,P-Dinitrophenyl Aminopropyldiphosphate
Beryllium Trifluoride.
pdb|1D1C|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With N-Methyl-O-Nitrophenyl
Aminoethyldiphosphate Beryllium Trifluoride
Length = 761
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 13/83 (15%)
Query: 39 VNPFTGYP-YTPRYHELHRKR---------ITLPVFEYRTEFMTLLAQNQCIVLVGETGS 88
VNPF P YT ++ + R + YR+ M QNQ +++ GE+G+
Sbjct: 126 VNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRS--MLDDRQNQSLLITGESGA 183
Query: 89 GKTTQIPQWCVEYSKSVGAKAVA 111
GKT + ++Y SV + A
Sbjct: 184 GKTENTKK-VIQYLASVAGRNQA 205
>pdb|1YV3|A Chain A, The Structural Basis Of Blebbistatin Inhibition And
Specificity For Myosin Ii
pdb|3BZ7|A Chain A, Crystal Structures Of (S)-(-)-Blebbistatin Analogs Bound
To Dictyostelium Discoideum Myosin Ii
pdb|3BZ8|A Chain A, Crystal Structures Of (S)-(-)-Blebbistatin Analogs Bound
To Dictyostelium Discoideum Myosin Ii
pdb|3BZ9|A Chain A, Crystal Structures Of (S)-(-)-Blebbistatin Analogs Bound
To Dictyostelium Discoideum Myosin Ii
Length = 762
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 13/83 (15%)
Query: 39 VNPFTGYP-YTPRYHELHRKR---------ITLPVFEYRTEFMTLLAQNQCIVLVGETGS 88
VNPF P YT ++ + R + YR+ M QNQ +++ GE+G+
Sbjct: 126 VNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRS--MLDDRQNQSLLITGESGA 183
Query: 89 GKTTQIPQWCVEYSKSVGAKAVA 111
GKT + ++Y SV + A
Sbjct: 184 GKTENTKK-VIQYLASVAGRNQA 205
>pdb|3MKD|A Chain A, Crystal Structure Of Myosin-2 Dictyostelium Discoideum
Motor Domain S456y Mutant In Complex With
Adp-Orthovanadate
Length = 692
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 13/83 (15%)
Query: 39 VNPFTGYP-YTPRYHELHRKR---------ITLPVFEYRTEFMTLLAQNQCIVLVGETGS 88
VNPF P YT ++ + R + YR+ M QNQ +++ GE+G+
Sbjct: 125 VNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRS--MLDDRQNQSLLITGESGA 182
Query: 89 GKTTQIPQWCVEYSKSVGAKAVA 111
GKT + ++Y SV + A
Sbjct: 183 GKTENTKK-VIQYLASVAGRNQA 204
>pdb|1MMN|A Chain A, X-Ray Structures Of The Mgadp, Mgatpgammas, And Mgamppnp
Complexes Of The Dictyostelium Discoideum Myosin Motor
Domain
Length = 762
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 13/83 (15%)
Query: 39 VNPFTGYP-YTPRYHELHRKR---------ITLPVFEYRTEFMTLLAQNQCIVLVGETGS 88
VNPF P YT ++ + R + YR+ M QNQ +++ GE+G+
Sbjct: 126 VNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRS--MLDDRQNQSLLITGESGA 183
Query: 89 GKTTQIPQWCVEYSKSVGAKAVA 111
GKT + ++Y SV + A
Sbjct: 184 GKTENTKK-VIQYLASVAGRNQA 205
>pdb|2Z0M|A Chain A, Crystal Structure Of Hypothetical Atp-Dependent Rna
Helicase From Sulfolobus Tokodaii
Length = 337
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 63/129 (48%), Gaps = 18/129 (13%)
Query: 65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVA 124
E +++ + L+ Q + +V+ +TGSGKT +E +G K++ T P R VA
Sbjct: 19 EVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILE----LGMKSLVVT-PTRELTRQVA 73
Query: 125 QRVSE---EMDCQLGQEVG---YSIRFEDCSSPKTVLKYMTDGMLL---REGMSDPMLEN 175
+ + MD ++ + G Y + + V+ T G LL +G+ D L +
Sbjct: 74 SHIRDIGRYMDTKVAEVYGGMPYKAQINRVRNADIVV--ATPGRLLDLWSKGVID--LSS 129
Query: 176 YQVILLDEA 184
++++++DEA
Sbjct: 130 FEIVIIDEA 138
>pdb|2Z83|A Chain A, Crystal Structure Of Catalytic Domain Of Japanese
Encephalitis Virus Ns3 HelicaseNUCLEOSIDE TRIPHOSPHATASE
At A Resolution 1.8
Length = 459
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 51/120 (42%), Gaps = 19/120 (15%)
Query: 72 TLLAQNQCIVLVGETGSGKTTQI-PQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEE 130
+L + Q VL GSGKT +I PQ + A Q R A ++ + V+ E
Sbjct: 16 NMLRKRQMTVLDLHPGSGKTRKILPQIIKD----------AIQQRLRTAVLAPTRVVAAE 65
Query: 131 MDCQLGQEVGYSIRFEDCSSPKT-----VLKYMTDGMLLREGMSDPMLENYQVILLDEAH 185
M L G +R++ + + ++ M L MS + NY + ++DEAH
Sbjct: 66 MAEAL---RGLPVRYQTSAVQREHQGNEIVDVMCHATLTHRLMSPNRVPNYNLFVMDEAH 122
>pdb|1LKX|A Chain A, Motor Domain Of Myoe, A Class-I Myosin
pdb|1LKX|B Chain B, Motor Domain Of Myoe, A Class-I Myosin
pdb|1LKX|C Chain C, Motor Domain Of Myoe, A Class-I Myosin
pdb|1LKX|D Chain D, Motor Domain Of Myoe, A Class-I Myosin
Length = 697
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 47 YTPRY-HELHRKRITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKT 91
Y RY +E+ L YR+ M +NQC+++ GE+G+GKT
Sbjct: 65 YNGRYKYEMPPHMYALANDAYRS--MRQSQENQCVIISGESGAGKT 108
>pdb|4A7F|C Chain C, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 3)
pdb|4A7F|G Chain G, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 3)
pdb|4A7F|J Chain J, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 3)
pdb|4A7H|C Chain C, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 2)
pdb|4A7H|I Chain I, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 2)
pdb|4A7H|J Chain J, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 2)
pdb|4A7L|C Chain C, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 1)
pdb|4A7L|G Chain G, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 1)
pdb|4A7L|J Chain J, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 1)
Length = 697
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 47 YTPRY-HELHRKRITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKT 91
Y RY +E+ L YR+ M +NQC+++ GE+G+GKT
Sbjct: 65 YNGRYKYEMPPHMYALANDAYRS--MRQSQENQCVIISGESGAGKT 108
>pdb|1A1V|A Chain A, Hepatitis C Virus Ns3 Helicase Domain Complexed With
Single Stranded Sdna
Length = 476
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 62/162 (38%), Gaps = 17/162 (10%)
Query: 62 PVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAM 121
PVF + + Q L TGSGK+T++P + + V P A +
Sbjct: 17 PVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPA-----AYAAQGYKVLVLNPSVAATL 71
Query: 122 SVAQRVSEEMDCQLGQEVGYSIRFEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILL 181
+S+ G +R SP T Y T G L +G Y +I+
Sbjct: 72 GFGAYMSKAHGVDPNIRTG--VRTITTGSPIT---YSTYGKFLADGGXSG--GAYDIIIC 124
Query: 182 DEAHERTLATDILMGVLKEVIKQ--RADLKLVIMSATLDAGK 221
DE H T AT IL + V+ Q A +LV+++ G
Sbjct: 125 DECHS-TDATSILG--IGTVLDQAETAGARLVVLATATPPGS 163
>pdb|1HEI|A Chain A, Structure Of The Hepatitis C Virus Rna Helicase Domain
pdb|1HEI|B Chain B, Structure Of The Hepatitis C Virus Rna Helicase Domain
Length = 451
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 62/162 (38%), Gaps = 17/162 (10%)
Query: 62 PVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAM 121
PVF + + Q L TGSGK+T++P + + V P A +
Sbjct: 3 PVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPA-----AYAAQGYKVLVLNPSVAATL 57
Query: 122 SVAQRVSEEMDCQLGQEVGYSIRFEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILL 181
+S+ G +R SP T Y T G L +G Y +I+
Sbjct: 58 GFGAYMSKAHGVDPNIRTG--VRTITTGSPIT---YSTYGKFLADGGCSG--GAYDIIIC 110
Query: 182 DEAHERTLATDILMGVLKEVIKQ--RADLKLVIMSATLDAGK 221
DE H T AT IL + V+ Q A +LV+++ G
Sbjct: 111 DECHS-TDATSILG--IGTVLDQAETAGARLVVLATATPPGS 149
>pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment.
pdb|1I84|V Chain V, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment
Length = 1184
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 12/88 (13%)
Query: 39 VNPFTGYP-YTPRYHELHR--KRITLPVFEY---RTEFMTLLA--QNQCIVLVGETGSGK 90
+NP+ P Y+ + ++++ KR +P Y T + ++L ++Q I+ GE+G+GK
Sbjct: 123 INPYKQLPIYSEKIIDMYKGKKRHEMPPHIYAIADTAYRSMLQDREDQSILCTGESGAGK 182
Query: 91 TTQ----IPQWCVEYSKSVGAKAVACTQ 114
T I V S G K + TQ
Sbjct: 183 TENTKKVIQYLAVVASSHKGKKDTSITQ 210
>pdb|2QEQ|A Chain A, Crystal Structure Of Kunjin Virus Ns3 Helicase
pdb|2QEQ|B Chain B, Crystal Structure Of Kunjin Virus Ns3 Helicase
Length = 434
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 49/116 (42%), Gaps = 19/116 (16%)
Query: 76 QNQCIVLVGETGSGKTTQI-PQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQ 134
+ Q VL G+GKT +I PQ E A + R A ++ + V+ EM
Sbjct: 1 KKQITVLDLHPGAGKTRRILPQIIKE----------AINRRLRTAVLAPTRVVAAEMAEA 50
Query: 135 LGQEVGYSIRFEDCSSPKT-----VLKYMTDGMLLREGMSDPMLENYQVILLDEAH 185
L G IR++ + + ++ M L MS + NY + ++DEAH
Sbjct: 51 L---RGLPIRYQTSAVAREHNGNEIVDVMCHATLTHRLMSPHRVPNYNLFVMDEAH 103
>pdb|3DTP|A Chain A, Tarantula Heavy Meromyosin Obtained By Flexible Docking To
Tarantula Muscle Thick Filament Cryo-Em 3d-Map
Length = 971
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 12/88 (13%)
Query: 39 VNPFTGYP-YTPRYHELHR--KRITLPVFEY---RTEFMTLLA--QNQCIVLVGETGSGK 90
+NP+ P Y+ + ++++ KR +P Y T + ++L ++Q I+ GE+G+GK
Sbjct: 123 INPYKQLPIYSEKIIDMYKGKKRHEMPPHIYAIADTAYRSMLQDREDQSILCTGESGAGK 182
Query: 91 TTQ----IPQWCVEYSKSVGAKAVACTQ 114
T I V S G K + TQ
Sbjct: 183 TENTKKVIQYLAVVASSHKGKKDTSITQ 210
>pdb|3DTP|B Chain B, Tarantula Heavy Meromyosin Obtained By Flexible Docking To
Tarantula Muscle Thick Filament Cryo-Em 3d-Map
Length = 973
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 12/88 (13%)
Query: 39 VNPFTGYP-YTPRYHELHR--KRITLPVFEY---RTEFMTLLA--QNQCIVLVGETGSGK 90
+NP+ P Y+ + ++++ KR +P Y T + ++L ++Q I+ GE+G+GK
Sbjct: 123 INPYKQLPIYSEKIIDMYKGKKRHEMPPHIYAIADTAYRSMLQDREDQSILCTGESGAGK 182
Query: 91 TTQ----IPQWCVEYSKSVGAKAVACTQ 114
T I V S G K + TQ
Sbjct: 183 TENTKKVIQYLAVVASSHKGKKDTSITQ 210
>pdb|4AI6|A Chain A, Dynein Motor Domain - Adp Complex
pdb|4AI6|B Chain B, Dynein Motor Domain - Adp Complex
pdb|4AKG|A Chain A, Dynein Motor Domain - Atp Complex
pdb|4AKG|B Chain B, Dynein Motor Domain - Atp Complex
pdb|4AKH|A Chain A, Dynein Motor Domain - Amppnp Complex
pdb|4AKH|B Chain B, Dynein Motor Domain - Amppnp Complex
pdb|4AKI|A Chain A, Dynein Motor Domain - Luac Derivative
pdb|4AKI|B Chain B, Dynein Motor Domain - Luac Derivative
Length = 2695
Score = 28.1 bits (61), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Query: 52 HELHRKRITLPVFE---YRTEFMTLLAQNQCIVLVGETGSGKT 91
HE+ R I +P + + F LL + I+L G GSGKT
Sbjct: 1239 HEVMRPDIVIPTIDTIKHEKIFYDLLNSKRGIILCGPPGSGKT 1281
>pdb|1BR2|A Chain A, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|B Chain B, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|C Chain C, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|D Chain D, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|E Chain E, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|F Chain F, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
Length = 791
Score = 28.1 bits (61), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 12/88 (13%)
Query: 39 VNPFTGYP-YTPRYHELHR--KRITLPVFEY---RTEFMTLLA--QNQCIVLVGETGSGK 90
+NP+ P Y+ + ++++ KR +P Y T + ++L ++Q I+ GE+G+GK
Sbjct: 123 INPYKQLPIYSEKIIDMYKGKKRHEMPPHIYAIADTAYRSMLQDREDQSILCTGESGAGK 182
Query: 91 TTQ----IPQWCVEYSKSVGAKAVACTQ 114
T I V S G K + TQ
Sbjct: 183 TENTKKVIQYLAVVASSHKGKKDTSITQ 210
>pdb|4A92|A Chain A, Full-Length Hcv Ns3-4a Protease-Helicase In Complex With A
Macrocyclic Protease Inhibitor.
pdb|4A92|B Chain B, Full-Length Hcv Ns3-4a Protease-Helicase In Complex With A
Macrocyclic Protease Inhibitor
Length = 666
Score = 28.1 bits (61), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 36/160 (22%), Positives = 60/160 (37%), Gaps = 13/160 (8%)
Query: 62 PVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAM 121
PVF + + Q L TGSGK+T++P + + V P A +
Sbjct: 217 PVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPA-----AYAAQGYKVLVLNPSVAATL 271
Query: 122 SVAQRVSEEMDCQLGQEVGYSIRFEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILL 181
+S+ G +R +P T Y T G L +G Y +I+
Sbjct: 272 GFGAYMSKAHGIDPNIRTG--VRTITTGAPVT---YSTYGKFLADGGCSG--GAYDIIIC 324
Query: 182 DEAHERTLATDILMGVLKEVIKQRADLKLVIMSATLDAGK 221
DE H T + +G + + + A +LV+++ G
Sbjct: 325 DECHSTDSTTILGIGTVLDQ-AETAGARLVVLATATPPGS 363
>pdb|3O8B|A Chain A, Visualizing Atp-Dependent Rna Translocation By The Ns3
Helicase From Hcv
pdb|3O8B|B Chain B, Visualizing Atp-Dependent Rna Translocation By The Ns3
Helicase From Hcv
pdb|3O8C|A Chain A, Visualizing Atp-Dependent Rna Translocation By The Ns3
Helicase From Hcv
pdb|3O8C|B Chain B, Visualizing Atp-Dependent Rna Translocation By The Ns3
Helicase From Hcv
pdb|3O8D|A Chain A, Visualizing Atp-Dependent Rna Translocation By The Ns3
Helicase From Hcv
pdb|3O8D|B Chain B, Visualizing Atp-Dependent Rna Translocation By The Ns3
Helicase From Hcv
pdb|3O8R|A Chain A, Visualizing Atp-Dependent Rna Translocation By The Ns3
Helicase From Hcv
pdb|3O8R|B Chain B, Visualizing Atp-Dependent Rna Translocation By The Ns3
Helicase From Hcv
pdb|4B71|A Chain A, Discovery Of An Allosteric Mechanism For The Regulation Of
Hcv Ns3 Protein Function
pdb|4B71|B Chain B, Discovery Of An Allosteric Mechanism For The Regulation Of
Hcv Ns3 Protein Function
pdb|4B73|A Chain A, Discovery Of An Allosteric Mechanism For The Regulation Of
Hcv Ns3 Protein Function
pdb|4B73|B Chain B, Discovery Of An Allosteric Mechanism For The Regulation Of
Hcv Ns3 Protein Function
pdb|4B74|A Chain A, Discovery Of An Allosteric Mechanism For The Regulation Of
Hcv Ns3 Protein Function
pdb|4B74|B Chain B, Discovery Of An Allosteric Mechanism For The Regulation Of
Hcv Ns3 Protein Function
pdb|4B76|A Chain A, Discovery Of An Allosteric Mechanism For The Regulation Of
Hcv Ns3 Protein Function
pdb|4B76|B Chain B, Discovery Of An Allosteric Mechanism For The Regulation Of
Hcv Ns3 Protein Function
Length = 666
Score = 28.1 bits (61), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 36/160 (22%), Positives = 60/160 (37%), Gaps = 13/160 (8%)
Query: 62 PVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAM 121
PVF + + Q L TGSGK+T++P + + V P A +
Sbjct: 217 PVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPA-----AYAAQGYKVLVLNPSVAATL 271
Query: 122 SVAQRVSEEMDCQLGQEVGYSIRFEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILL 181
+S+ G +R +P T Y T G L +G Y +I+
Sbjct: 272 GFGAYMSKAHGIDPNIRTG--VRTITTGAPVT---YSTYGKFLADGGCSG--GAYDIIIC 324
Query: 182 DEAHERTLATDILMGVLKEVIKQRADLKLVIMSATLDAGK 221
DE H T + +G + + + A +LV+++ G
Sbjct: 325 DECHSTDSTTILGIGTVLDQ-AETAGARLVVLATATPPGS 363
>pdb|4B75|A Chain A, Discovery Of An Allosteric Mechanism For The Regulation Of
Hcv Ns3 Protein Function
pdb|4B75|B Chain B, Discovery Of An Allosteric Mechanism For The Regulation Of
Hcv Ns3 Protein Function
Length = 666
Score = 28.1 bits (61), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 36/160 (22%), Positives = 60/160 (37%), Gaps = 13/160 (8%)
Query: 62 PVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAM 121
PVF + + Q L TGSGK+T++P + + V P A +
Sbjct: 217 PVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPA-----AYAAQGYKVLVLNPSVAATL 271
Query: 122 SVAQRVSEEMDCQLGQEVGYSIRFEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILL 181
+S+ G +R +P T Y T G L +G Y +I+
Sbjct: 272 GFGAYMSKAHGIDPNIRTG--VRTITTGAPVT---YSTYGKFLADGGCSG--GAYDIIIC 324
Query: 182 DEAHERTLATDILMGVLKEVIKQRADLKLVIMSATLDAGK 221
DE H T + +G + + + A +LV+++ G
Sbjct: 325 DECHSTDSTTILGIGTVLDQ-AETAGARLVVLATATPPGS 363
>pdb|1CU1|A Chain A, Crystal Structure Of An Enzyme Complex From Hepatitis C
Virus
pdb|1CU1|B Chain B, Crystal Structure Of An Enzyme Complex From Hepatitis C
Virus
Length = 645
Score = 28.1 bits (61), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 36/160 (22%), Positives = 60/160 (37%), Gaps = 13/160 (8%)
Query: 62 PVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAM 121
PVF + + Q L TGSGK+T++P + + V P A +
Sbjct: 196 PVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPA-----AYAAQGYKVLVLNPSVAATL 250
Query: 122 SVAQRVSEEMDCQLGQEVGYSIRFEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILL 181
+S+ G +R +P T Y T G L +G Y +I+
Sbjct: 251 GFGAYMSKAHGIDPNIRTG--VRTITTGAPVT---YSTYGKFLADGGCSG--GAYDIIIC 303
Query: 182 DEAHERTLATDILMGVLKEVIKQRADLKLVIMSATLDAGK 221
DE H T + +G + + + A +LV+++ G
Sbjct: 304 DECHSTDSTTILGIGTVLDQ-AETAGARLVVLATATPPGS 342
>pdb|3QMZ|A Chain A, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
pdb|3QMZ|B Chain B, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
Length = 2486
Score = 28.1 bits (61), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Query: 52 HELHRKRITLPVFE---YRTEFMTLLAQNQCIVLVGETGSGKT 91
HE+ R I +P + + F LL + I+L G GSGKT
Sbjct: 1020 HEVMRPDIVIPTIDTIKHEKIFYDLLNSKRGIILCGPPGSGKT 1062
>pdb|1BR1|A Chain A, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Alf4 Bound At The Active Site
pdb|1BR1|C Chain C, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Alf4 Bound At The Active Site
pdb|1BR1|E Chain E, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Alf4 Bound At The Active Site
pdb|1BR1|G Chain G, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Alf4 Bound At The Active Site
pdb|1BR4|A Chain A, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Bef3 Bound At The Active Site
pdb|1BR4|C Chain C, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Bef3 Bound At The Active Site
pdb|1BR4|E Chain E, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Bef3 Bound At The Active Site
pdb|1BR4|G Chain G, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Bef3 Bound At The Active Site
Length = 820
Score = 27.7 bits (60), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 12/88 (13%)
Query: 39 VNPFTGYP-YTPRYHELHR--KRITLPVFEY---RTEFMTLLA--QNQCIVLVGETGSGK 90
+NP+ P Y+ + ++++ KR +P Y T + ++L ++Q I+ GE+G+GK
Sbjct: 123 INPYKQLPIYSEKIIDMYKGKKRHEMPPHIYAIADTAYRSMLQDREDQSILCTGESGAGK 182
Query: 91 TTQ----IPQWCVEYSKSVGAKAVACTQ 114
T I V S G K + TQ
Sbjct: 183 TENTKKVIQYLAVVASSHKGKKDTSITQ 210
>pdb|3J04|A Chain A, Em Structure Of The Heavy Meromyosin Subfragment Of Chick
Smooth Muscle Myosin With Regulatory Light Chain In
Phosphorylated State
pdb|3J04|D Chain D, Em Structure Of The Heavy Meromyosin Subfragment Of Chick
Smooth Muscle Myosin With Regulatory Light Chain In
Phosphorylated State
Length = 909
Score = 27.7 bits (60), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 12/88 (13%)
Query: 39 VNPFTGYP-YTPRYHELHR--KRITLPVFEY---RTEFMTLLA--QNQCIVLVGETGSGK 90
+NP+ P Y+ + ++++ KR +P Y T + ++L ++Q I+ GE+G+GK
Sbjct: 123 INPYKQLPIYSEKIIDMYKGKKRHEMPPHIYAIADTAYRSMLQDREDQSILCTGESGAGK 182
Query: 91 TTQ----IPQWCVEYSKSVGAKAVACTQ 114
T I V S G K + TQ
Sbjct: 183 TENTKKVIQYLAVVASSHKGKKDTSITQ 210
>pdb|4B3F|X Chain X, Crystal Structure Of 1ghmbp2 Helicase
Length = 646
Score = 27.7 bits (60), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 74 LAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVS 128
L+Q + ++ G G+GKTT + + ++ K G K V C P +A ++ +R++
Sbjct: 202 LSQKELAIIHGPPGTGKTTTVVEIILQAVKQ-GLK-VLCCAPSNIAVDNLVERLA 254
>pdb|4B6E|A Chain A, Discovery Of An Allosteric Mechanism For The Regulation Of
Hcv Ns3 Protein Function
pdb|4B6E|B Chain B, Discovery Of An Allosteric Mechanism For The Regulation Of
Hcv Ns3 Protein Function
pdb|4B6F|A Chain A, Discovery Of An Allosteric Mechanism For The Regulation Of
Hcv Ns3 Protein Function
pdb|4B6F|B Chain B, Discovery Of An Allosteric Mechanism For The Regulation Of
Hcv Ns3 Protein Function
Length = 683
Score = 27.7 bits (60), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 36/160 (22%), Positives = 60/160 (37%), Gaps = 13/160 (8%)
Query: 62 PVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAM 121
PVF + + Q L TGSGK+T++P + + V P A +
Sbjct: 217 PVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPA-----AYAAQGYKVLVLNPSVAATL 271
Query: 122 SVAQRVSEEMDCQLGQEVGYSIRFEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILL 181
+S+ G +R +P T Y T G L +G Y +I+
Sbjct: 272 GFGAYMSKAHGIDPNIRTG--VRTITTGAPVT---YSTYGKFLADGGCSG--GAYDIIIC 324
Query: 182 DEAHERTLATDILMGVLKEVIKQRADLKLVIMSATLDAGK 221
DE H T + +G + + + A +LV+++ G
Sbjct: 325 DECHSTDSTTILGIGTVLDQ-AETAGARLVVLATATPPGS 363
>pdb|4B3G|A Chain A, Crystal Structure Of Ighmbp2 Helicase In Complex With Rna
pdb|4B3G|B Chain B, Crystal Structure Of Ighmbp2 Helicase In Complex With Rna
Length = 646
Score = 27.7 bits (60), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 74 LAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVS 128
L+Q + ++ G G+GKTT + + ++ K G K V C P +A ++ +R++
Sbjct: 202 LSQKELAIIHGPPGTGKTTTVVEIILQAVKQ-GLK-VLCCAPSNIAVDNLVERLA 254
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,750,952
Number of Sequences: 62578
Number of extensions: 349459
Number of successful extensions: 1253
Number of sequences better than 100.0: 61
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 52
Number of HSP's that attempted gapping in prelim test: 1234
Number of HSP's gapped (non-prelim): 65
length of query: 302
length of database: 14,973,337
effective HSP length: 98
effective length of query: 204
effective length of database: 8,840,693
effective search space: 1803501372
effective search space used: 1803501372
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)