BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2071
(302 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5RAZ4|DHX15_PONAB Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15
OS=Pongo abelii GN=DHX15 PE=2 SV=2
Length = 795
Score = 345 bits (886), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 158/213 (74%), Positives = 187/213 (87%), Gaps = 2/213 (0%)
Query: 39 VNPFTGYPYTPRYHELHRKRITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWC 98
+NPFT P+TPRY+++ +KR+ LPV+EY+ F +L ++Q VLVGETGSGKTTQIPQWC
Sbjct: 115 INPFTNLPHTPRYYDILKKRLQLPVWEYKDRFTDILVRHQSFVLVGETGSGKTTQIPQWC 174
Query: 99 VEYSKSVGA--KAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRFEDCSSPKTVLK 156
VEY +S+ + VACTQPRRVAAMSVAQRV++EMD LGQEVGYSIRFEDCSS KT+LK
Sbjct: 175 VEYMRSLPGPKRGVACTQPRRVAAMSVAQRVADEMDVMLGQEVGYSIRFEDCSSAKTILK 234
Query: 157 YMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILMGVLKEVIKQRADLKLVIMSAT 216
YMTDGMLLRE M+DP+LE Y VI+LDEAHERTLATDILMGVLKEV++QR+DLK+++MSAT
Sbjct: 235 YMTDGMLLREAMNDPLLERYGVIILDEAHERTLATDILMGVLKEVVRQRSDLKVIVMSAT 294
Query: 217 LDAGKFQQYFDNAPLMNVPGRTHPVEIFYTPEP 249
LDAGKFQ YFDN PL+ +PGRTHPVEIFYTPEP
Sbjct: 295 LDAGKFQIYFDNCPLLTIPGRTHPVEIFYTPEP 327
Score = 85.9 bits (211), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 37/41 (90%), Positives = 39/41 (95%)
Query: 257 LPQCFTRPNEAKKAADDAKMRFAHIDGDHLTLLNVYHAFKQ 297
+PQCF RP EAKKAAD+AKMRFAHIDGDHLTLLNVYHAFKQ
Sbjct: 596 VPQCFVRPTEAKKAADEAKMRFAHIDGDHLTLLNVYHAFKQ 636
>sp|O35286|DHX15_MOUSE Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15
OS=Mus musculus GN=Dhx15 PE=2 SV=2
Length = 795
Score = 345 bits (886), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 158/213 (74%), Positives = 187/213 (87%), Gaps = 2/213 (0%)
Query: 39 VNPFTGYPYTPRYHELHRKRITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWC 98
+NPFT P+TPRY+++ +KR+ LPV+EY+ F +L ++Q VLVGETGSGKTTQIPQWC
Sbjct: 115 INPFTNLPHTPRYYDILKKRLQLPVWEYKDRFTDILVRHQSFVLVGETGSGKTTQIPQWC 174
Query: 99 VEYSKSVGA--KAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRFEDCSSPKTVLK 156
VEY +S+ + VACTQPRRVAAMSVAQRV++EMD LGQEVGYSIRFEDCSS KT+LK
Sbjct: 175 VEYMRSLPGPKRGVACTQPRRVAAMSVAQRVADEMDVMLGQEVGYSIRFEDCSSAKTILK 234
Query: 157 YMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILMGVLKEVIKQRADLKLVIMSAT 216
YMTDGMLLRE M+DP+LE Y VI+LDEAHERTLATDILMGVLKEV++QR+DLK+++MSAT
Sbjct: 235 YMTDGMLLREAMNDPLLERYGVIILDEAHERTLATDILMGVLKEVVRQRSDLKVIVMSAT 294
Query: 217 LDAGKFQQYFDNAPLMNVPGRTHPVEIFYTPEP 249
LDAGKFQ YFDN PL+ +PGRTHPVEIFYTPEP
Sbjct: 295 LDAGKFQIYFDNCPLLTIPGRTHPVEIFYTPEP 327
Score = 85.9 bits (211), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 37/41 (90%), Positives = 39/41 (95%)
Query: 257 LPQCFTRPNEAKKAADDAKMRFAHIDGDHLTLLNVYHAFKQ 297
+PQCF RP EAKKAAD+AKMRFAHIDGDHLTLLNVYHAFKQ
Sbjct: 596 VPQCFVRPTEAKKAADEAKMRFAHIDGDHLTLLNVYHAFKQ 636
>sp|O43143|DHX15_HUMAN Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15
OS=Homo sapiens GN=DHX15 PE=1 SV=2
Length = 795
Score = 345 bits (885), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 158/213 (74%), Positives = 187/213 (87%), Gaps = 2/213 (0%)
Query: 39 VNPFTGYPYTPRYHELHRKRITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWC 98
+NPFT P+TPRY+++ +KR+ LPV+EY+ F +L ++Q VLVGETGSGKTTQIPQWC
Sbjct: 115 INPFTNLPHTPRYYDILKKRLQLPVWEYKDRFTDILVRHQSFVLVGETGSGKTTQIPQWC 174
Query: 99 VEYSKSVGA--KAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRFEDCSSPKTVLK 156
VEY +S+ + VACTQPRRVAAMSVAQRV++EMD LGQEVGYSIRFEDCSS KT+LK
Sbjct: 175 VEYMRSLPGPKRGVACTQPRRVAAMSVAQRVADEMDVMLGQEVGYSIRFEDCSSAKTILK 234
Query: 157 YMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILMGVLKEVIKQRADLKLVIMSAT 216
YMTDGMLLRE M+DP+LE Y VI+LDEAHERTLATDILMGVLKEV++QR+DLK+++MSAT
Sbjct: 235 YMTDGMLLREAMNDPLLERYGVIILDEAHERTLATDILMGVLKEVVRQRSDLKVIVMSAT 294
Query: 217 LDAGKFQQYFDNAPLMNVPGRTHPVEIFYTPEP 249
LDAGKFQ YFDN PL+ +PGRTHPVEIFYTPEP
Sbjct: 295 LDAGKFQIYFDNCPLLTIPGRTHPVEIFYTPEP 327
Score = 85.9 bits (211), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 37/41 (90%), Positives = 39/41 (95%)
Query: 257 LPQCFTRPNEAKKAADDAKMRFAHIDGDHLTLLNVYHAFKQ 297
+PQCF RP EAKKAAD+AKMRFAHIDGDHLTLLNVYHAFKQ
Sbjct: 596 VPQCFVRPTEAKKAADEAKMRFAHIDGDHLTLLNVYHAFKQ 636
>sp|Q20875|DHX15_CAEEL Putative pre-mRNA-splicing factor ATP-dependent RNA helicase
F56D2.6 OS=Caenorhabditis elegans GN=F56D2.6 PE=2 SV=1
Length = 739
Score = 312 bits (800), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 146/218 (66%), Positives = 178/218 (81%), Gaps = 7/218 (3%)
Query: 37 LQVNPFTGYPYTPRYHELHRKRITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQ 96
+Q+NP+ P++ RY + KR LPV+EY+ +FM LL NQCI LVGETGSGKTTQIPQ
Sbjct: 52 IQINPYNNQPFSNRYWAIWEKRSQLPVWEYKEKFMELLRNNQCITLVGETGSGKTTQIPQ 111
Query: 97 WCVEYSKSVG-------AKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRFEDCS 149
W VE+ K A+ VACTQPRRVAAMSVA RV+EEMD LGQEVGYSIRFEDC
Sbjct: 112 WAVEFMKQQQQGQPPGQARLVACTQPRRVAAMSVATRVAEEMDVVLGQEVGYSIRFEDCI 171
Query: 150 SPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILMGVLKEVIKQRADLK 209
S +TVLKY TDGMLLRE M+ P+L+ Y+V++LDEAHERTLATDILMG++KE+++ RAD+K
Sbjct: 172 SERTVLKYCTDGMLLREAMNSPLLDKYKVLILDEAHERTLATDILMGLIKEIVRNRADIK 231
Query: 210 LVIMSATLDAGKFQQYFDNAPLMNVPGRTHPVEIFYTP 247
+VIMSATLDAGKFQ+YF++ PL++VPGRT PVEIF+TP
Sbjct: 232 VVIMSATLDAGKFQRYFEDCPLLSVPGRTFPVEIFFTP 269
Score = 75.9 bits (185), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 31/41 (75%), Positives = 36/41 (87%)
Query: 257 LPQCFTRPNEAKKAADDAKMRFAHIDGDHLTLLNVYHAFKQ 297
+PQC+ RPNE + AD+AK RFAHIDGDHLTLLNVYH+FKQ
Sbjct: 540 VPQCWVRPNEMRTEADEAKARFAHIDGDHLTLLNVYHSFKQ 580
>sp|O22899|DHX15_ARATH Probable pre-mRNA-splicing factor ATP-dependent RNA helicase
OS=Arabidopsis thaliana GN=At2g47250 PE=2 SV=1
Length = 729
Score = 286 bits (733), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 145/250 (58%), Positives = 186/250 (74%), Gaps = 9/250 (3%)
Query: 6 LDVI-DPYITKKNREERLATVNASVSTSIASNLQVNPFTGYPYTPRYHELHRKRITLPVF 64
DV+ DP ++ KN + + + SNL +N + G Y+ RY E+ KR LPV+
Sbjct: 12 FDVMEDPSLSSKNTKSNGLG--LAAAAGGGSNL-INKWNGKAYSQRYFEILEKRRDLPVW 68
Query: 65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEY----SKSVGAK-AVACTQPRRVA 119
+ +F+ L NQ ++LVGETGSGKTTQIPQ+ ++ + G K V CTQPRRVA
Sbjct: 69 LQKDDFLNTLNSNQTLILVGETGSGKTTQIPQFVLDAVVADNSDKGRKWLVGCTQPRRVA 128
Query: 120 AMSVAQRVSEEMDCQLGQEVGYSIRFEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVI 179
AMSV++RV++EMD +G+EVGYSIRFEDC+S +T+LKY+TDGMLLRE M+DP+LE Y+VI
Sbjct: 129 AMSVSRRVADEMDVSIGEEVGYSIRFEDCTSSRTMLKYLTDGMLLREAMADPLLERYKVI 188
Query: 180 LLDEAHERTLATDILMGVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRTH 239
+LDEAHERTLATD+L G+LKEV++ R DLKLV+MSATL+A KFQ+YF APLM VPGR H
Sbjct: 189 ILDEAHERTLATDVLFGLLKEVLRNRPDLKLVVMSATLEAEKFQEYFSGAPLMKVPGRLH 248
Query: 240 PVEIFYTPEP 249
PVEIFYT EP
Sbjct: 249 PVEIFYTQEP 258
Score = 77.4 bits (189), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 32/41 (78%), Positives = 36/41 (87%)
Query: 257 LPQCFTRPNEAKKAADDAKMRFAHIDGDHLTLLNVYHAFKQ 297
+P CF RP EA+KAAD+AK RF HIDGDHLTLLNVYHA+KQ
Sbjct: 527 VPNCFVRPREAQKAADEAKARFGHIDGDHLTLLNVYHAYKQ 567
>sp|P53131|PRP43_YEAST Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=PRP43 PE=1 SV=1
Length = 767
Score = 285 bits (729), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 138/212 (65%), Positives = 171/212 (80%), Gaps = 1/212 (0%)
Query: 38 QVNPFTGYPYTPRYHELHRKRITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQW 97
++NPFTG +TP+Y ++ + R LPV R EF+ L NQ +V VGETGSGKTTQIPQ+
Sbjct: 70 KINPFTGREFTPKYVDILKIRRELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQIPQF 129
Query: 98 CV-EYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRFEDCSSPKTVLK 156
+ + + VACTQPRRVAAMSVAQRV+EEMD +LG+EVGYSIRFE+ +S KT+LK
Sbjct: 130 VLFDEMPHLENTQVACTQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFENKTSNKTILK 189
Query: 157 YMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILMGVLKEVIKQRADLKLVIMSAT 216
YMTDGMLLRE M D L Y I+LDEAHERTLATDILMG+LK+V+K+R DLK++IMSAT
Sbjct: 190 YMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSAT 249
Query: 217 LDAGKFQQYFDNAPLMNVPGRTHPVEIFYTPE 248
LDA KFQ+YF++APL+ VPGRT+PVE++YTPE
Sbjct: 250 LDAEKFQRYFNDAPLLAVPGRTYPVELYYTPE 281
Score = 63.5 bits (153), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/40 (70%), Positives = 31/40 (77%)
Query: 257 LPQCFTRPNEAKKAADDAKMRFAHIDGDHLTLLNVYHAFK 296
+P F RP + KK ADDAK FAH DGDH+TLLNVYHAFK
Sbjct: 551 VPNVFIRPTKDKKRADDAKNIFAHPDGDHITLLNVYHAFK 590
>sp|Q54NJ4|DHX15_DICDI Putative pre-mRNA-splicing factor ATP-dependent RNA helicase dhx15
OS=Dictyostelium discoideum GN=dhx15 PE=3 SV=1
Length = 727
Score = 281 bits (719), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 132/216 (61%), Positives = 173/216 (80%), Gaps = 2/216 (0%)
Query: 35 SNLQVNPFT--GYPYTPRYHELHRKRITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTT 92
SNL ++ + ++ RY+E+ KR LPV++ + +F+ ++ +NQ ++LVGETGSGKTT
Sbjct: 49 SNLTIDQWIPKKETFSKRYYEILEKRKELPVWKQKEDFIKVIKENQVVILVGETGSGKTT 108
Query: 93 QIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRFEDCSSPK 152
QIPQ+ V+ K V TQPRRVAA+SVA+RVSEEMD +LG+EVGYSIRFE+ SS +
Sbjct: 109 QIPQFVVDAGLIRPGKMVGVTQPRRVAAISVAKRVSEEMDFELGEEVGYSIRFEELSSAR 168
Query: 153 TVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILMGVLKEVIKQRADLKLVI 212
T +KY+TDGMLLRE MSDP L Y VI+LDEAHERTL+TDIL G++K+++K+R DLKL++
Sbjct: 169 TFMKYLTDGMLLRESMSDPTLNKYDVIILDEAHERTLSTDILFGLIKDILKRRKDLKLIV 228
Query: 213 MSATLDAGKFQQYFDNAPLMNVPGRTHPVEIFYTPE 248
MSATL+AGKFQ+YF+NAPL+ VPGR HPVEIFYT E
Sbjct: 229 MSATLEAGKFQKYFENAPLIKVPGRLHPVEIFYTEE 264
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 24/40 (60%), Positives = 29/40 (72%)
Query: 258 PQCFTRPNEAKKAADDAKMRFAHIDGDHLTLLNVYHAFKQ 297
P CF RP + + AD AK F H DGDHLT+LNVYH+FK+
Sbjct: 524 PNCFMRPKDNRIEADSAKKSFDHFDGDHLTMLNVYHSFKK 563
>sp|O42945|DHX15_SCHPO Probable pre-mRNA-splicing factor ATP-dependent RNA helicase prp43
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=prp43 PE=3 SV=1
Length = 735
Score = 273 bits (699), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 135/238 (56%), Positives = 172/238 (72%), Gaps = 4/238 (1%)
Query: 13 ITKKNREERLATVNASVSTSIASNLQVNPFTGYPYTPRYHELHRKRITLPVFEYRTEFMT 72
++ K R TV + N N F P++ Y ++ R LPV++ R EF+
Sbjct: 30 VSSKGLTRRATTVAQAAKAEEGPN---NFFNDKPFSQNYFKILETRRELPVYQQREEFLK 86
Query: 73 LLAQNQCIVLVGETGSGKTTQIPQWCV-EYSKSVGAKAVACTQPRRVAAMSVAQRVSEEM 131
+ +NQ IV VGETGSGKTTQIPQ+ + + + +ACTQPRRVAAMSVA+RV++EM
Sbjct: 87 IYHENQIIVFVGETGSGKTTQIPQFVLYDELPHLTNTQIACTQPRRVAAMSVAKRVADEM 146
Query: 132 DCQLGQEVGYSIRFEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLAT 191
D LG+EVGY+IRFEDCS P T+LKYMTDGMLLRE M+D ML Y I+LDEAHERTLAT
Sbjct: 147 DVDLGEEVGYNIRFEDCSGPNTLLKYMTDGMLLREAMTDHMLSRYSCIILDEAHERTLAT 206
Query: 192 DILMGVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRTHPVEIFYTPEP 249
DILMG++K + +R DLK+++MSATLDA KFQ+YF +APL+ VPGRT+PVEI+YT EP
Sbjct: 207 DILMGLMKRLATRRPDLKIIVMSATLDAKKFQKYFFDAPLLAVPGRTYPVEIYYTQEP 264
Score = 62.4 bits (150), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 26/44 (59%), Positives = 32/44 (72%)
Query: 257 LPQCFTRPNEAKKAADDAKMRFAHIDGDHLTLLNVYHAFKQRFG 300
+P F RPN A+K AD+ + +F H DGDHLTLLNVYHA+K G
Sbjct: 533 VPNVFVRPNSARKLADEMRQQFTHPDGDHLTLLNVYHAYKSGEG 576
>sp|Q14562|DHX8_HUMAN ATP-dependent RNA helicase DHX8 OS=Homo sapiens GN=DHX8 PE=1 SV=1
Length = 1220
Score = 247 bits (631), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 114/193 (59%), Positives = 151/193 (78%), Gaps = 1/193 (0%)
Query: 57 KRITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPR 116
+R +LP+++ + + + + NQ ++++GETGSGKTTQI Q+ E + K + CTQPR
Sbjct: 561 QRESLPIYKLKEQLVQAVHDNQILIVIGETGSGKTTQITQYLAEAGYTSRGK-IGCTQPR 619
Query: 117 RVAAMSVAQRVSEEMDCQLGQEVGYSIRFEDCSSPKTVLKYMTDGMLLREGMSDPMLENY 176
RVAAMSVA+RVSEE C LGQEVGY+IRFEDC+SP+TV+KYMTDGMLLRE + DP L Y
Sbjct: 620 RVAAMSVAKRVSEEFGCCLGQEVGYTIRFEDCTSPETVIKYMTDGMLLRECLIDPDLTQY 679
Query: 177 QVILLDEAHERTLATDILMGVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPG 236
+I+LDEAHERT+ TD+L G+LK+ +++R D+KL++ SATLDA KF QYF AP+ +PG
Sbjct: 680 AIIMLDEAHERTIHTDVLFGLLKKTVQKRQDMKLIVTSATLDAVKFSQYFYEAPIFTIPG 739
Query: 237 RTHPVEIFYTPEP 249
RT+PVEI YT EP
Sbjct: 740 RTYPVEILYTKEP 752
Score = 41.2 bits (95), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 24/37 (64%)
Query: 260 CFTRPNEAKKAADDAKMRFAHIDGDHLTLLNVYHAFK 296
F RP + + AD K +F +GDHLTLL VY+++K
Sbjct: 1017 VFYRPKDKQALADQKKAKFHQTEGDHLTLLAVYNSWK 1053
>sp|A2A4P0|DHX8_MOUSE ATP-dependent RNA helicase DHX8 OS=Mus musculus GN=Dhx8 PE=2 SV=1
Length = 1244
Score = 247 bits (631), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 114/193 (59%), Positives = 151/193 (78%), Gaps = 1/193 (0%)
Query: 57 KRITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPR 116
+R +LP+++ + + + + NQ ++++GETGSGKTTQI Q+ E + K + CTQPR
Sbjct: 585 QRESLPIYKLKEQLVQAVHDNQILIVIGETGSGKTTQITQYLAEAGYTSRGK-IGCTQPR 643
Query: 117 RVAAMSVAQRVSEEMDCQLGQEVGYSIRFEDCSSPKTVLKYMTDGMLLREGMSDPMLENY 176
RVAAMSVA+RVSEE C LGQEVGY+IRFEDC+SP+TV+KYMTDGMLLRE + DP L Y
Sbjct: 644 RVAAMSVAKRVSEEFGCCLGQEVGYTIRFEDCTSPETVIKYMTDGMLLRECLIDPDLTQY 703
Query: 177 QVILLDEAHERTLATDILMGVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPG 236
+I+LDEAHERT+ TD+L G+LK+ +++R D+KL++ SATLDA KF QYF AP+ +PG
Sbjct: 704 AIIMLDEAHERTIHTDVLFGLLKKTVQKRQDMKLIVTSATLDAVKFSQYFYEAPIFTIPG 763
Query: 237 RTHPVEIFYTPEP 249
RT+PVEI YT EP
Sbjct: 764 RTYPVEILYTKEP 776
Score = 41.2 bits (95), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 24/37 (64%)
Query: 260 CFTRPNEAKKAADDAKMRFAHIDGDHLTLLNVYHAFK 296
F RP + + AD K +F +GDHLTLL VY+++K
Sbjct: 1041 VFYRPKDKQALADQKKAKFHQTEGDHLTLLAVYNSWK 1077
>sp|O45244|DHX16_CAEEL Probable pre-mRNA-splicing factor ATP-dependent RNA helicase mog-4
OS=Caenorhabditis elegans GN=mog-4 PE=1 SV=2
Length = 1008
Score = 246 bits (629), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 112/196 (57%), Positives = 151/196 (77%)
Query: 54 LHRKRITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACT 113
+ R +LPV+ +R F+ + ++Q +++ GETGSGKTTQ+PQ+ E G K + CT
Sbjct: 357 IEETRKSLPVYAFRDAFIEAVKEHQVLIIEGETGSGKTTQLPQYLYEAGFCEGGKRIGCT 416
Query: 114 QPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRFEDCSSPKTVLKYMTDGMLLREGMSDPML 173
QPRRVAAMSVA RV++E+ C+LG +VGYSIRFEDC+S KTVLKYMTDGMLLRE +++P L
Sbjct: 417 QPRRVAAMSVAARVADEVGCKLGTQVGYSIRFEDCTSEKTVLKYMTDGMLLREFLNEPDL 476
Query: 174 ENYQVILLDEAHERTLATDILMGVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMN 233
+Y V+++DEAHERTL TDIL G++K++ + R DLKL+I SATLDA KF +FD+AP+
Sbjct: 477 ASYSVMMIDEAHERTLHTDILFGLVKDIARFRKDLKLLISSATLDAEKFSSFFDDAPIFR 536
Query: 234 VPGRTHPVEIFYTPEP 249
+PGR PV+I+YT P
Sbjct: 537 IPGRRFPVDIYYTQAP 552
Score = 33.1 bits (74), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
Query: 260 CFTRPNEAKKAADDAKMRFAHIDGDHLTLLNVYH-----AFKQRF 299
F RP AD A+ F GDH+TL+NVY+ +F QR+
Sbjct: 819 VFYRPKAQVIHADSARKGFWSPAGDHITLMNVYNKWQESSFSQRW 863
>sp|Q10752|CDC28_SCHPO Pre-mRNA-splicing factor ATP-dependent RNA helicase-like protein
cdc28 OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) GN=cdc28 PE=3 SV=2
Length = 1055
Score = 246 bits (628), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 113/196 (57%), Positives = 154/196 (78%)
Query: 54 LHRKRITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACT 113
L R +LPV++Y+ + + + + Q +++V ETGSGKTTQ+PQ+ E + G K + CT
Sbjct: 411 LESSRKSLPVYQYKDDLLKAINEYQVLLIVAETGSGKTTQLPQFLHEAGYTKGNKKICCT 470
Query: 114 QPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRFEDCSSPKTVLKYMTDGMLLREGMSDPML 173
QPRRVAAMSVA RV++EMD +LGQEVGYSIRFE+ +S KTV+KY+TDGMLLRE +++P L
Sbjct: 471 QPRRVAAMSVAARVAKEMDVRLGQEVGYSIRFENATSEKTVIKYLTDGMLLREFLTEPDL 530
Query: 174 ENYQVILLDEAHERTLATDILMGVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMN 233
+Y VI++DEAHERTL TDIL G++K++ + R DLK++I SAT+DA KF YFD AP+
Sbjct: 531 ASYSVIIIDEAHERTLHTDILFGLVKDIARFRPDLKVLISSATIDAEKFSAYFDEAPVFY 590
Query: 234 VPGRTHPVEIFYTPEP 249
VPGR +PV+I+YTP+P
Sbjct: 591 VPGRRYPVDIYYTPQP 606
Score = 34.3 bits (77), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 261 FTRPNEAKKAADDAKMRFAHIDGDHLTLLNVYHAF 295
F RP + AD A+ F GDHLTLL++++ +
Sbjct: 873 FYRPKDKIMEADKARANFTQPGGDHLTLLHIWNEW 907
>sp|Q767K6|DHX16_PIG Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
OS=Sus scrofa GN=DHX16 PE=3 SV=1
Length = 1045
Score = 241 bits (616), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 111/192 (57%), Positives = 147/192 (76%)
Query: 58 RITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRR 117
R +LPVF +R E + +A +Q +++ GETGSGKTTQIPQ+ E + +ACTQPRR
Sbjct: 400 RRSLPVFPFREELLAAVANHQILIIEGETGSGKTTQIPQYLFEEGYTQKGMKIACTQPRR 459
Query: 118 VAAMSVAQRVSEEMDCQLGQEVGYSIRFEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQ 177
VAAMSVA RV+ EM +LG EVGYSIRFEDC+S +TVL+YMTDGMLLRE +S+P L +Y
Sbjct: 460 VAAMSVAARVAREMGVKLGNEVGYSIRFEDCTSERTVLRYMTDGMLLREFLSEPDLASYS 519
Query: 178 VILLDEAHERTLATDILMGVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGR 237
V+++DEAHERTL TDIL G++K+V + R +LK+++ SATLD +F +FD+AP+ +PGR
Sbjct: 520 VVMVDEAHERTLHTDILFGLIKDVARFRPELKVLVASATLDTARFSTFFDDAPVFRIPGR 579
Query: 238 THPVEIFYTPEP 249
PV+IFYT P
Sbjct: 580 RFPVDIFYTKAP 591
Score = 34.7 bits (78), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 20/32 (62%)
Query: 261 FTRPNEAKKAADDAKMRFAHIDGDHLTLLNVY 292
F RP + AD+A++ F GDHL LLNVY
Sbjct: 858 FYRPKDKVVHADNARVNFFLPGGDHLVLLNVY 889
>sp|O42643|PRP22_SCHPO Pre-mRNA-splicing factor ATP-dependent RNA helicase prp22
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=prp22 PE=1 SV=1
Length = 1168
Score = 241 bits (615), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 111/196 (56%), Positives = 150/196 (76%)
Query: 54 LHRKRITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACT 113
+ +R LPVF+ R +F+ +++NQ +VL+GETGSGKTTQI Q+ E + +K + CT
Sbjct: 503 MKEQREGLPVFKLRKQFLEAVSKNQILVLLGETGSGKTTQITQYLAEEGYTSDSKMIGCT 562
Query: 114 QPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRFEDCSSPKTVLKYMTDGMLLREGMSDPML 173
QPRRVAAMSVA+RV+EE+ C++G+EVGY+IRFED +S T +KYMTDGML RE + DP+L
Sbjct: 563 QPRRVAAMSVAKRVAEEVGCRVGEEVGYTIRFEDKTSRMTQIKYMTDGMLQRECLVDPLL 622
Query: 174 ENYQVILLDEAHERTLATDILMGVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMN 233
Y VI+LDEAHERT+ATD+L G+LK + +R DLKL++ SATLDA +F YF P+
Sbjct: 623 SKYSVIILDEAHERTVATDVLFGLLKGTVLKRPDLKLIVTSATLDAERFSSYFYKCPIFT 682
Query: 234 VPGRTHPVEIFYTPEP 249
+PGR++PVEI YT +P
Sbjct: 683 IPGRSYPVEIMYTKQP 698
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 28/40 (70%)
Query: 257 LPQCFTRPNEAKKAADDAKMRFAHIDGDHLTLLNVYHAFK 296
+P ++RP E ++ AD + +FA+ + DHLTLLNVY +K
Sbjct: 960 VPNIWSRPREKQQEADRQRAQFANPESDHLTLLNVYTTWK 999
>sp|O60231|DHX16_HUMAN Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
OS=Homo sapiens GN=DHX16 PE=1 SV=2
Length = 1041
Score = 241 bits (615), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 110/192 (57%), Positives = 147/192 (76%)
Query: 58 RITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRR 117
R +LPVF +R E + +A +Q +++ GETGSGKTTQIPQ+ E + +ACTQPRR
Sbjct: 396 RRSLPVFPFREELLAAIANHQVLIIEGETGSGKTTQIPQYLFEEGYTNKGMKIACTQPRR 455
Query: 118 VAAMSVAQRVSEEMDCQLGQEVGYSIRFEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQ 177
VAAMSVA RV+ EM +LG EVGYSIRFEDC+S +TVL+YMTDGMLLRE +S+P L +Y
Sbjct: 456 VAAMSVAARVAREMGVKLGNEVGYSIRFEDCTSERTVLRYMTDGMLLREFLSEPDLASYS 515
Query: 178 VILLDEAHERTLATDILMGVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGR 237
V+++DEAHERTL TDIL G++K+V + R +LK+++ SAT+D +F +FD+AP+ +PGR
Sbjct: 516 VVMVDEAHERTLHTDILFGLIKDVARFRPELKVLVASATMDTARFSTFFDDAPVFRIPGR 575
Query: 238 THPVEIFYTPEP 249
PV+IFYT P
Sbjct: 576 RFPVDIFYTKAP 587
Score = 34.7 bits (78), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 20/32 (62%)
Query: 261 FTRPNEAKKAADDAKMRFAHIDGDHLTLLNVY 292
F RP + AD+A++ F GDHL LLNVY
Sbjct: 854 FYRPKDKVVHADNARVNFFLPGGDHLVLLNVY 885
>sp|Q7YR39|DHX16_PANTR Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
OS=Pan troglodytes GN=DHX16 PE=3 SV=1
Length = 1044
Score = 241 bits (615), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 110/192 (57%), Positives = 147/192 (76%)
Query: 58 RITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRR 117
R +LPVF +R E + +A +Q +++ GETGSGKTTQIPQ+ E + +ACTQPRR
Sbjct: 399 RRSLPVFPFREELLAAIANHQVLIIEGETGSGKTTQIPQYLFEEGYTNKGMKIACTQPRR 458
Query: 118 VAAMSVAQRVSEEMDCQLGQEVGYSIRFEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQ 177
VAAMSVA RV+ EM +LG EVGYSIRFEDC+S +TVL+YMTDGMLLRE +S+P L +Y
Sbjct: 459 VAAMSVAARVAREMGVKLGNEVGYSIRFEDCTSERTVLRYMTDGMLLREFLSEPDLASYS 518
Query: 178 VILLDEAHERTLATDILMGVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGR 237
V+++DEAHERTL TDIL G++K+V + R +LK+++ SAT+D +F +FD+AP+ +PGR
Sbjct: 519 VVMVDEAHERTLHTDILFGLIKDVARFRPELKVLVASATMDTARFSTFFDDAPVFRIPGR 578
Query: 238 THPVEIFYTPEP 249
PV+IFYT P
Sbjct: 579 RFPVDIFYTKAP 590
Score = 34.7 bits (78), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 20/32 (62%)
Query: 261 FTRPNEAKKAADDAKMRFAHIDGDHLTLLNVY 292
F RP + AD+A++ F GDHL LLNVY
Sbjct: 857 FYRPKDKVVHADNARVNFFLPGGDHLVLLNVY 888
>sp|Q38953|DHX8_ARATH Probable pre-mRNA-splicing factor ATP-dependent RNA helicase
OS=Arabidopsis thaliana GN=At3g26560 PE=1 SV=2
Length = 1168
Score = 239 bits (609), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 110/196 (56%), Positives = 148/196 (75%), Gaps = 1/196 (0%)
Query: 54 LHRKRITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACT 113
+ +R +LP+++ + E + + NQ +V++GETGSGKTTQ+ Q+ E + K + CT
Sbjct: 508 IQEQRESLPIYKLKKELIQAVHDNQVLVVIGETGSGKTTQVTQYLAEAGYTTKGK-IGCT 566
Query: 114 QPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRFEDCSSPKTVLKYMTDGMLLREGMSDPML 173
QPRRVAAMSVA+RV+EE C+LG+EVGY+IRFEDC+ P TV+KYMTDGMLLRE + D L
Sbjct: 567 QPRRVAAMSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDTVIKYMTDGMLLREILIDENL 626
Query: 174 ENYQVILLDEAHERTLATDILMGVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMN 233
Y VI+LDEAHERT+ TD+L G+LK+++K+R DL+L++ SATLDA KF YF N +
Sbjct: 627 SQYSVIMLDEAHERTIHTDVLFGLLKKLMKRRLDLRLIVTSATLDAEKFSGYFFNCNIFT 686
Query: 234 VPGRTHPVEIFYTPEP 249
+PGRT PVEI YT +P
Sbjct: 687 IPGRTFPVEILYTKQP 702
Score = 41.6 bits (96), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 24/39 (61%)
Query: 260 CFTRPNEAKKAADDAKMRFAHIDGDHLTLLNVYHAFKQR 298
F RP E + AD + +F +GDHLTLL VY A+K +
Sbjct: 967 IFYRPREKQAQADQKRAKFFQPEGDHLTLLAVYEAWKAK 1005
>sp|Q54F05|DHX8_DICDI ATP-dependent RNA helicase dhx8 OS=Dictyostelium discoideum GN=dhx8
PE=3 SV=1
Length = 1160
Score = 239 bits (609), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 110/196 (56%), Positives = 153/196 (78%), Gaps = 1/196 (0%)
Query: 54 LHRKRITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACT 113
+ +R +LP+F R F+ ++++Q +V++GETGSGKTTQ+ Q+ E K + CT
Sbjct: 501 IKEQRESLPIFPLREAFLQAVSEHQLLVVIGETGSGKTTQMAQYLAEAGYGTRGK-IGCT 559
Query: 114 QPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRFEDCSSPKTVLKYMTDGMLLREGMSDPML 173
QPRRVAAMSV++RV+EE CQLGQEVGY+IRFEDC+SP+T++K+MTDG+LLRE + DP L
Sbjct: 560 QPRRVAAMSVSKRVAEEFGCQLGQEVGYAIRFEDCTSPETIIKFMTDGILLRECLLDPNL 619
Query: 174 ENYQVILLDEAHERTLATDILMGVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMN 233
Y VI+LDEAHERT++TD+L G+LK+ +++R +LK++I SATL+A KF +YF NA L
Sbjct: 620 SAYSVIILDEAHERTISTDVLFGLLKQALQRRPELKVLITSATLEAEKFSKYFMNAQLFI 679
Query: 234 VPGRTHPVEIFYTPEP 249
+PGRT PV+I YT +P
Sbjct: 680 IPGRTFPVDIRYTKDP 695
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 24/37 (64%)
Query: 260 CFTRPNEAKKAADDAKMRFAHIDGDHLTLLNVYHAFK 296
F RP E + AD K +F +GDHLTLLNVY ++K
Sbjct: 960 VFYRPKEKQALADQKKAKFFQPEGDHLTLLNVYESWK 996
>sp|Q09530|MOG5_CAEEL Probable pre-mRNA-splicing factor ATP-dependent RNA helicase mog-5
OS=Caenorhabditis elegans GN=mog-5 PE=1 SV=1
Length = 1200
Score = 236 bits (603), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 111/193 (57%), Positives = 144/193 (74%), Gaps = 1/193 (0%)
Query: 57 KRITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPR 116
+R +LP+F + M + NQ +V+VGETGSGKTTQ+ Q+ +E K + CTQPR
Sbjct: 536 QRESLPIFALKKNLMEAMIDNQILVVVGETGSGKTTQMTQYAIEAGLGRRGK-IGCTQPR 594
Query: 117 RVAAMSVAQRVSEEMDCQLGQEVGYSIRFEDCSSPKTVLKYMTDGMLLREGMSDPMLENY 176
RVAAMSVA+RV+EE C+LG +VGY+IRFEDC+S T++KYMTDGMLLRE + DP L Y
Sbjct: 595 RVAAMSVAKRVAEEYGCKLGTDVGYTIRFEDCTSQDTIIKYMTDGMLLRECLIDPDLSGY 654
Query: 177 QVILLDEAHERTLATDILMGVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPG 236
+I+LDEAHERT+ TD+L G+LK ++R +LKL+I SATLD+ KF +YF AP+ +PG
Sbjct: 655 SLIMLDEAHERTIHTDVLFGLLKAAARKRPELKLIITSATLDSVKFSEYFLEAPIFTIPG 714
Query: 237 RTHPVEIFYTPEP 249
RT PVEI YT EP
Sbjct: 715 RTFPVEILYTREP 727
Score = 41.2 bits (95), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 24/36 (66%)
Query: 261 FTRPNEAKKAADDAKMRFAHIDGDHLTLLNVYHAFK 296
F RP E + AD K +F +GDHLTLL VY+++K
Sbjct: 993 FYRPKEKQDHADQKKAKFHQPEGDHLTLLAVYNSWK 1028
>sp|Q54MH3|DHX16_DICDI Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
OS=Dictyostelium discoideum GN=dhx16 PE=3 SV=1
Length = 1106
Score = 236 bits (602), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 113/192 (58%), Positives = 145/192 (75%), Gaps = 1/192 (0%)
Query: 58 RITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRR 117
R +LPV+ YR + + + + Q +++VGETGSGKTTQIPQ+ E S K + CTQPRR
Sbjct: 464 RKSLPVYPYREQLIDAVREYQVLIIVGETGSGKTTQIPQYLHEAGFSKTGK-IGCTQPRR 522
Query: 118 VAAMSVAQRVSEEMDCQLGQEVGYSIRFEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQ 177
VAAMSVA RV+EE+ C+LG EVGYSIRFEDC+S KTVL+YMTDGML+RE ++ P L +Y
Sbjct: 523 VAAMSVAARVAEEVGCKLGNEVGYSIRFEDCTSQKTVLQYMTDGMLVREFLTAPDLASYS 582
Query: 178 VILLDEAHERTLATDILMGVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGR 237
V+++DEAHERTL TDIL G+LK++ + R DLKL+I SAT+DA +F YFD AP N+PGR
Sbjct: 583 VLIIDEAHERTLHTDILFGLLKDITRFRPDLKLLISSATMDAERFSDYFDGAPTFNIPGR 642
Query: 238 THPVEIFYTPEP 249
+ V YT P
Sbjct: 643 KYEVTTHYTQAP 654
Score = 32.0 bits (71), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 25/37 (67%)
Query: 261 FTRPNEAKKAADDAKMRFAHIDGDHLTLLNVYHAFKQ 297
F RP + AAD A+ F H GDHLTL+NV++ +++
Sbjct: 921 FYRPKDKAFAADAARKLFFHPQGDHLTLMNVFNQWRE 957
>sp|P20095|PRP2_YEAST Pre-mRNA-splicing factor ATP-dependent RNA helicase-like protein
PRP2 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=PRP2 PE=1 SV=1
Length = 876
Score = 233 bits (595), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 114/202 (56%), Positives = 151/202 (74%), Gaps = 2/202 (0%)
Query: 50 RYHELHRKRITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYS-KSVGAK 108
R + R LPV +Y+ E + + +NQ ++++GETGSGKTTQ+PQ+ VE G
Sbjct: 212 RILTIQEARKLLPVHQYKDELLQEIKKNQVLIIMGETGSGKTTQLPQYLVEDGFTDQGKL 271
Query: 109 AVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRFEDCSSP-KTVLKYMTDGMLLREG 167
+A TQPRRVAA SVA RV++EM+ LG+EVGY IRFED ++P KTVLKYMTDGMLLRE
Sbjct: 272 QIAITQPRRVAATSVAARVADEMNVVLGKEVGYQIRFEDKTTPNKTVLKYMTDGMLLREF 331
Query: 168 MSDPMLENYQVILLDEAHERTLATDILMGVLKEVIKQRADLKLVIMSATLDAGKFQQYFD 227
++D L Y I++DEAHERTLATDIL+G+LK+++ QR LKL+I SAT++A KF ++FD
Sbjct: 332 LTDSKLSKYSCIMIDEAHERTLATDILIGLLKDILPQRPTLKLLISSATMNAKKFSEFFD 391
Query: 228 NAPLMNVPGRTHPVEIFYTPEP 249
N P+ NVPGR +PV+I YT +P
Sbjct: 392 NCPIFNVPGRRYPVDIHYTLQP 413
>sp|P34498|MOG1_CAEEL Probable pre-mRNA-splicing factor ATP-dependent RNA helicase mog-1
OS=Caenorhabditis elegans GN=mog-1 PE=1 SV=2
Length = 1131
Score = 229 bits (583), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 107/197 (54%), Positives = 147/197 (74%), Gaps = 2/197 (1%)
Query: 54 LHRKRITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACT 113
+ ++R LPVF R + M ++ +N +++VGETGSGKTTQ+ Q+ +E + + CT
Sbjct: 434 IKQQREYLPVFACRQKMMNVIRENNVVIIVGETGSGKTTQLAQYLLEDGFG-DSGLIGCT 492
Query: 114 QPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRFEDCSSPKTVLKYMTDGMLLREGMSDPML 173
QPRRVAAMSVA+RV++EM LGQ+VGY+IRFEDC+S KT++KYMTDG+LLRE + D L
Sbjct: 493 QPRRVAAMSVARRVADEMGVDLGQDVGYAIRFEDCTSEKTIIKYMTDGILLRECLGDGSL 552
Query: 174 ENYQVILLDEAHERTLATDILMGVLKEVIKQRADLKLVIMSATLDAGKFQQYF-DNAPLM 232
+ Y I++DEAHER+L TD+L G+L+EVI +RADLKL++ SAT+DA KF +F N P
Sbjct: 553 DQYSAIIMDEAHERSLNTDVLFGLLREVIAKRADLKLIVTSATMDADKFADFFGGNCPTF 612
Query: 233 NVPGRTHPVEIFYTPEP 249
+PGRT PVE+F+ P
Sbjct: 613 TIPGRTFPVELFHARTP 629
Score = 34.7 bits (78), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 257 LPQCFTRPNEAKKAADDAKMRFAHIDGDHLTLLNVYHAFK 296
+P F RP ++ AD K +F + DHLT LNVY ++
Sbjct: 890 VPAIFFRPKGREEEADAKKEKFQVPESDHLTFLNVYIQWR 929
>sp|Q17R09|PRP16_BOVIN Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 OS=Bos
taurus GN=DHX38 PE=2 SV=1
Length = 1227
Score = 227 bits (578), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 103/193 (53%), Positives = 145/193 (75%), Gaps = 1/193 (0%)
Query: 57 KRITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPR 116
+R LP+F + E +T++ N +++VGETGSGKTTQ+ Q+ E + CTQPR
Sbjct: 528 QRQYLPIFAVQQELLTIIRDNSIVIVVGETGSGKTTQLTQYLHE-DGYTDYGMIGCTQPR 586
Query: 117 RVAAMSVAQRVSEEMDCQLGQEVGYSIRFEDCSSPKTVLKYMTDGMLLREGMSDPMLENY 176
RVAAMSVA+RVSEEM LG+EVGY+IRFEDC+S T++KYMTDG+LLRE + + L++Y
Sbjct: 587 RVAAMSVAKRVSEEMGGNLGEEVGYAIRFEDCTSESTLIKYMTDGILLRESLREADLDHY 646
Query: 177 QVILLDEAHERTLATDILMGVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPG 236
I++DEAHER+L TD+L G+L+EV+ +R+DLKL++ SAT+DA KF +F N P+ ++PG
Sbjct: 647 SAIIMDEAHERSLNTDVLFGLLREVVARRSDLKLIVTSATMDAEKFASFFGNVPIFHIPG 706
Query: 237 RTHPVEIFYTPEP 249
RT PV+I ++ P
Sbjct: 707 RTFPVDILFSKTP 719
Score = 34.3 bits (77), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 24/40 (60%)
Query: 257 LPQCFTRPNEAKKAADDAKMRFAHIDGDHLTLLNVYHAFK 296
+P F RP ++ +D + +FA + DHL+ LNVY +K
Sbjct: 980 VPAIFYRPKGREEESDQIREKFAVPESDHLSYLNVYLQWK 1019
>sp|Q92620|PRP16_HUMAN Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 OS=Homo
sapiens GN=DHX38 PE=1 SV=2
Length = 1227
Score = 226 bits (576), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 103/193 (53%), Positives = 145/193 (75%), Gaps = 1/193 (0%)
Query: 57 KRITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPR 116
+R LP+F + E +T++ N +++VGETGSGKTTQ+ Q+ E + CTQPR
Sbjct: 528 QRQYLPIFAVQQELLTIIRDNSIVIVVGETGSGKTTQLTQYLHE-DGYTDYGMIGCTQPR 586
Query: 117 RVAAMSVAQRVSEEMDCQLGQEVGYSIRFEDCSSPKTVLKYMTDGMLLREGMSDPMLENY 176
RVAAMSVA+RVSEEM LG+EVGY+IRFEDC+S T++KYMTDG+LLRE + + L++Y
Sbjct: 587 RVAAMSVAKRVSEEMGGNLGEEVGYAIRFEDCTSENTLIKYMTDGILLRESLREADLDHY 646
Query: 177 QVILLDEAHERTLATDILMGVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPG 236
I++DEAHER+L TD+L G+L+EV+ +R+DLKL++ SAT+DA KF +F N P+ ++PG
Sbjct: 647 SAIIMDEAHERSLNTDVLFGLLREVVARRSDLKLIVTSATMDAEKFAAFFGNVPIFHIPG 706
Query: 237 RTHPVEIFYTPEP 249
RT PV+I ++ P
Sbjct: 707 RTFPVDILFSKTP 719
Score = 35.4 bits (80), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 24/40 (60%)
Query: 257 LPQCFTRPNEAKKAADDAKMRFAHIDGDHLTLLNVYHAFK 296
+P F RP ++ +D + +FA + DHLT LNVY +K
Sbjct: 980 VPAIFYRPKGREEESDQIREKFAVPESDHLTYLNVYLQWK 1019
>sp|P24384|PRP22_YEAST Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP22
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=PRP22 PE=1 SV=1
Length = 1145
Score = 226 bits (575), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 104/195 (53%), Positives = 145/195 (74%), Gaps = 1/195 (0%)
Query: 57 KRITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPR 116
+R TLPV+ R+E + + NQ +V+VGETGSGKTTQI Q+ E S + CTQPR
Sbjct: 479 QRQTLPVYAMRSELIQAVRDNQFLVIVGETGSGKTTQITQYLDEEGFS-NYGMIGCTQPR 537
Query: 117 RVAAMSVAQRVSEEMDCQLGQEVGYSIRFEDCSSPKTVLKYMTDGMLLREGMSDPMLENY 176
RVAA+SVA+RV+EE+ C++G +VGY+IRFED + P T +KYMTDGML RE + DP + Y
Sbjct: 538 RVAAVSVAKRVAEEVGCKVGHDVGYTIRFEDVTGPDTRIKYMTDGMLQREALLDPEMSKY 597
Query: 177 QVILLDEAHERTLATDILMGVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPG 236
VI+LDEAHERT+ATD+L +LK+ +R +LK+++ SATL++ KF +YF N P++N+PG
Sbjct: 598 SVIMLDEAHERTVATDVLFALLKKAAIKRPELKVIVTSATLNSAKFSEYFLNCPIINIPG 657
Query: 237 RTHPVEIFYTPEPPL 251
+T PVE+ Y+ P +
Sbjct: 658 KTFPVEVLYSQTPQM 672
Score = 42.0 bits (97), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 24/38 (63%)
Query: 260 CFTRPNEAKKAADDAKMRFAHIDGDHLTLLNVYHAFKQ 297
F RP + + AD K +F H GDHLTLLNVY ++Q
Sbjct: 935 VFYRPKDRQLEADSKKAKFHHPYGDHLTLLNVYTRWQQ 972
>sp|Q9P774|PRP16_SCHPO Pre-mRNA-splicing factor ATP-dependent RNA helicase prp16
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=prp16 PE=3 SV=2
Length = 1173
Score = 224 bits (571), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 109/209 (52%), Positives = 148/209 (70%), Gaps = 8/209 (3%)
Query: 43 TGYPYTPRYHELHRKRITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVE-- 100
T + T Y E +R LP F R + ++++ NQ +++VGETGSGKTTQ+ Q+ E
Sbjct: 477 TEFARTKSYRE---QREFLPAFAVREQLLSVIRDNQVLIVVGETGSGKTTQLAQFLYEDG 533
Query: 101 YSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRFEDCSSPKTVLKYMTD 160
Y ++ + CTQPRRVAAMSVA+RVSEEM +LG VGYSIRFED + P TV+KYMTD
Sbjct: 534 YHRN---GMIGCTQPRRVAAMSVAKRVSEEMGVRLGSTVGYSIRFEDVTGPDTVIKYMTD 590
Query: 161 GMLLREGMSDPMLENYQVILLDEAHERTLATDILMGVLKEVIKQRADLKLVIMSATLDAG 220
G+LLRE + LE Y VI++DEAHER+L TDILMG+LK+V+ +R D+KL++ SAT+++
Sbjct: 591 GVLLRESLMQNNLEKYSVIIMDEAHERSLNTDILMGLLKKVLSRRRDIKLLVTSATMNSQ 650
Query: 221 KFQQYFDNAPLMNVPGRTHPVEIFYTPEP 249
KF +F AP +PGRT+PV+I + P
Sbjct: 651 KFSDFFGGAPQFTIPGRTYPVDIMFAKAP 679
Score = 37.4 bits (85), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 257 LPQCFTRPNEAKKAADDAKMRFAHIDGDHLTLLNVYHAFKQRFG 300
+P F RP E + +D A+ +F + DHL LLN+Y + QR G
Sbjct: 940 VPSVFYRPKERAEESDAAREKFNVPESDHLMLLNIYQHW-QRNG 982
>sp|P15938|PRP16_YEAST Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=PRP16 PE=1 SV=2
Length = 1071
Score = 214 bits (546), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 104/206 (50%), Positives = 147/206 (71%), Gaps = 4/206 (1%)
Query: 47 YTPRYHELHRKRITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVE--YSKS 104
+TP ++ + LPVF R++ ++L+ +NQ +V++GETGSGKTTQ+ Q+ E Y+
Sbjct: 336 FTPSKDDIKHTKEQLPVFRCRSQLLSLIRENQVVVIIGETGSGKTTQLAQYLYEEGYAND 395
Query: 105 VGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRFEDCSSPK-TVLKYMTDGML 163
G K++ TQPRRVAA+SVA+RV+ EM LG+EVGYSIRFED + + T LK++TDG+L
Sbjct: 396 RG-KSIVVTQPRRVAAISVAKRVAMEMQVPLGKEVGYSIRFEDVTDSECTKLKFVTDGIL 454
Query: 164 LREGMSDPMLENYQVILLDEAHERTLATDILMGVLKEVIKQRADLKLVIMSATLDAGKFQ 223
LRE + D L+ Y +++DEAHER+L TDIL+G K ++ +R DLKL+I SAT++A KF
Sbjct: 455 LRETLLDDTLDKYSCVIIDEAHERSLNTDILLGFFKILLARRRDLKLIITSATMNAKKFS 514
Query: 224 QYFDNAPLMNVPGRTHPVEIFYTPEP 249
+F NAP +PGRT PV+ YT P
Sbjct: 515 AFFGNAPQFTIPGRTFPVQTIYTSNP 540
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 26/40 (65%)
Query: 257 LPQCFTRPNEAKKAADDAKMRFAHIDGDHLTLLNVYHAFK 296
+PQ F RP E +K AD A+ +F DHLTLLNV+ ++
Sbjct: 814 VPQVFYRPKERQKEADIARNKFFIAKSDHLTLLNVFEQWR 853
>sp|Q03319|PRH1_SCHPO Probable ATP-dependent RNA helicase prh1 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=prh1 PE=3 SV=2
Length = 719
Score = 211 bits (537), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 103/201 (51%), Positives = 149/201 (74%), Gaps = 7/201 (3%)
Query: 53 ELHRKRITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVE--YSKSVGAKAV 110
++ +R LP++E + N+ IV+VGETGSGK+TQIPQ+ E Y++ V
Sbjct: 88 DILEQRKNLPIWEAHDTLCQQIQDNRVIVVVGETGSGKSTQIPQFLNECPYAQE---GCV 144
Query: 111 ACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRFEDCSSPKTVLKYMTDGMLLREGMSD 170
A TQPRRVAA+++A+RV+ E C+LG++VGYSIRF+D +S KT +KY+TDGMLLRE ++D
Sbjct: 145 AITQPRRVAAVNLAKRVAAEQGCRLGEQVGYSIRFDDTTSKKTRIKYLTDGMLLRELIND 204
Query: 171 PMLENYQVILLDEAHERTLATDILMGVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAP 230
P+L Y ++LDEAHERTL TD+L+G +K++IK+R L+++IMSATL+A +F ++FD A
Sbjct: 205 PILSQYHTLILDEAHERTLMTDMLLGFVKKIIKKRPALRVIIMSATLNAERFSEFFDGAE 264
Query: 231 LMNVPGRTHPVEIF--YTPEP 249
+ + GR +PV+I YTPEP
Sbjct: 265 ICYISGRQYPVQIHYTYTPEP 285
>sp|Q9H5Z1|DHX35_HUMAN Probable ATP-dependent RNA helicase DHX35 OS=Homo sapiens GN=DHX35
PE=1 SV=2
Length = 703
Score = 209 bits (531), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 107/233 (45%), Positives = 149/233 (63%), Gaps = 18/233 (7%)
Query: 28 SVSTSIASNLQVNPFTGYPYTPRYHELHRKRITLPVFEYRTEFMTLLAQNQCIVLVGETG 87
S++ + + + NP+ + ++R LPVF+ R + L+ Q +V+VGETG
Sbjct: 28 SLAENSGTTVVYNPYAAL-------SIEQQRQKLPVFKLRNHILYLIENYQTVVIVGETG 80
Query: 88 SGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRFED 147
GK+TQIPQ+ E + + V TQPRRVAA++VA RV+EE LG EVGY IRF+D
Sbjct: 81 CGKSTQIPQYLAEAGWTAEGRVVGVTQPRRVAAVTVAGRVAEERGAVLGHEVGYCIRFDD 140
Query: 148 CSSP-KTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILMGVLKEVIKQRA 206
C+ T +K++TDGML+RE M DP+L Y VI+LDEAHERTL TDI +G+LK++ K+R
Sbjct: 141 CTDQLATRIKFLTDGMLVREMMVDPLLTKYSVIMLDEAHERTLYTDIAIGLLKKIQKKRG 200
Query: 207 DLKLVIMSATLDAGKFQQYF----------DNAPLMNVPGRTHPVEIFYTPEP 249
DL+L++ SATLDA KF+ +F D ++ V GRT PV+IFY P
Sbjct: 201 DLRLIVASATLDADKFRDFFNQNETSDPARDTCVILTVEGRTFPVDIFYLQSP 253
Score = 35.0 bits (79), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 20/35 (57%)
Query: 261 FTRPNEAKKAADDAKMRFAHIDGDHLTLLNVYHAF 295
F P K A +FA +GDHLT+LN+Y AF
Sbjct: 521 FVVPPNQKSHAIRVHRKFAVEEGDHLTMLNIYEAF 555
>sp|Q5RBD4|DHX35_PONAB Probable ATP-dependent RNA helicase DHX35 OS=Pongo abelii GN=DHX35
PE=2 SV=1
Length = 720
Score = 208 bits (530), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 109/226 (48%), Positives = 146/226 (64%), Gaps = 12/226 (5%)
Query: 36 NLQVNPFTGYPYTPRYH-ELHRKRITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQI 94
+L N T Y P + ++R LPVF+ R + L+ Q +V+VGETG GK+TQI
Sbjct: 28 SLAENSGTTVVYNPYAALSIEQQRQKLPVFKLRNHILYLIENYQTVVIVGETGCGKSTQI 87
Query: 95 PQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRFEDCSSP-KT 153
PQ+ E + + V TQPRRVAA++VA RV+EE LG EVGY IRF+DC+ T
Sbjct: 88 PQYLAEAGWTAEGRVVGVTQPRRVAAVTVAGRVAEERGAVLGHEVGYCIRFDDCTDQLAT 147
Query: 154 VLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILMGVLKEVIKQRADLKLVIM 213
+K++TDGML+RE M DP+L Y VI+LDEAHERTL TDI +G+LK++ K+R DL+L++
Sbjct: 148 RIKFLTDGMLVREMMVDPLLTKYSVIMLDEAHERTLYTDIAIGLLKKIQKKRGDLRLIVA 207
Query: 214 SATLDAGKFQQYF----------DNAPLMNVPGRTHPVEIFYTPEP 249
SATLDA KF+ +F D ++ V GRT PV+IFY P
Sbjct: 208 SATLDADKFRDFFNQNETSDPARDTCVILTVGGRTFPVDIFYLQSP 253
Score = 35.8 bits (81), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 20/35 (57%)
Query: 261 FTRPNEAKKAADDAKMRFAHIDGDHLTLLNVYHAF 295
F P K A +FA +GDHLT+LNVY AF
Sbjct: 521 FVVPPNQKSQAIRVHRKFAVEEGDHLTMLNVYEAF 555
>sp|P36009|DHR2_YEAST Probable ATP-dependent RNA helicase DHR2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=DHR2 PE=1
SV=1
Length = 735
Score = 207 bits (527), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 105/237 (44%), Positives = 161/237 (67%), Gaps = 6/237 (2%)
Query: 40 NPFTGYPYTPRYHELHRKRITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCV 99
N T R +L + R TLPV++++ E M+ + N VL+GETGSGK+TQIPQ+ +
Sbjct: 60 NVLTYKSLKSRASDLLKMRETLPVYQHKREIMSYIESNPVTVLIGETGSGKSTQIPQFVL 119
Query: 100 EY---SKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRFEDCSSPKTVLK 156
E +K G+ +A TQPRRVAA+++A RV++E C+LG++VGYS+RF++ ++ +T LK
Sbjct: 120 EKLYDTKKHGS--IAVTQPRRVAAINLATRVAQEHGCKLGEQVGYSVRFDNTTTTRTRLK 177
Query: 157 YMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILMGVLKEVIKQ-RADLKLVIMSA 215
Y+TDGMLLRE M + L Y VI++DEAHERT+ TD+++G LK +I+ R DL++++MSA
Sbjct: 178 YLTDGMLLRELMMNSDLREYSVIVIDEAHERTVLTDLILGFLKSLIQGPRPDLRIIVMSA 237
Query: 216 TLDAGKFQQYFDNAPLMNVPGRTHPVEIFYTPEPPLGAGPWLPQCFTRPNEAKKAAD 272
TL A KF ++F+NAP++ V GR V+ +Y P + +C + N+ ++ D
Sbjct: 238 TLQAEKFSEFFNNAPILFVEGRKFDVKQYYLKAPTDDIVDAVIRCCIQINQGEELGD 294
>sp|Q9BKQ8|DHX35_CAEEL Probable ATP-dependent RNA helicase DHX35 homolog OS=Caenorhabditis
elegans GN=Y67D2.6 PE=3 SV=1
Length = 732
Score = 206 bits (525), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 102/240 (42%), Positives = 159/240 (66%), Gaps = 20/240 (8%)
Query: 19 EERLATVNASVSTSIASNLQV--NPFTGYPYTPRYHELHRKRITLPVFEYRTEFMTLLAQ 76
EER +T NA + I L+V NP+ + ++RI LP+F+ R + + +
Sbjct: 41 EER-STENAGAAPPIEEQLKVHNNPYASL-------NIQQQRIRLPIFKNRGHILYMCER 92
Query: 77 NQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLG 136
+ I++VGETG GK+TQ+PQ+ +E + + + TQPRRVA +++A RV+EE DC LG
Sbjct: 93 YRTIIIVGETGCGKSTQVPQFLLEAGWAADGRQIVITQPRRVAVVTLATRVAEEKDCILG 152
Query: 137 QEVGYSIRFEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILMG 196
+VGY++RF+D S T +K+MTDG+LLRE ++DP+L Y +I++DEAHER+ TDIL+G
Sbjct: 153 HDVGYTVRFDDVSDKDTKVKFMTDGLLLREILADPLLSKYSIIMIDEAHERSCNTDILLG 212
Query: 197 VLKEVIKQRADLKLVIMSATLDAGKFQQYF----------DNAPLMNVPGRTHPVEIFYT 246
+L+++I+ R DL++++ SATLDA F+ +F D A +++V GRTHPV + +T
Sbjct: 213 LLRKIIQIRNDLRIIVSSATLDAELFKDFFEMNETGNSDKDTAGIISVEGRTHPVAVHHT 272
Score = 33.1 bits (74), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 261 FTRPNEAKKAADDAKMRFAHIDGDHLTLLNVYHAF 295
F P + AD + +FA +GDH+T+LNV+ F
Sbjct: 540 FITPYRQRHQADVIRKKFAVEEGDHMTMLNVFTKF 574
>sp|Q80VY9|DHX33_MOUSE Putative ATP-dependent RNA helicase DHX33 OS=Mus musculus GN=Dhx33
PE=1 SV=1
Length = 698
Score = 206 bits (523), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 104/217 (47%), Positives = 144/217 (66%), Gaps = 6/217 (2%)
Query: 38 QVNPFTGYPYTPRYHELHRKRITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQW 97
Q P +P L +R +LP+F R + + L VL+GETGSGKTTQIPQ+
Sbjct: 42 QTPPLAQPSASPYREALELQRRSLPIFRARGQLLAQLRNLDNAVLIGETGSGKTTQIPQY 101
Query: 98 CVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRFEDCSSPKTVLKY 157
E S +A TQPRRVAA+S+A RVS+E +LG+ VGY++RFED +S T +K+
Sbjct: 102 LYEGGISRQG-IIAVTQPRRVAAISLATRVSDEKRTELGKLVGYTVRFEDVTSEDTRIKF 160
Query: 158 MTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILMGVLKEVIKQRAD-----LKLVI 212
+TDGMLLRE +SD +L Y ++LDEAHERT+ TD+L GV+K K+R + LK+++
Sbjct: 161 LTDGMLLREAISDSLLRKYSCVILDEAHERTIHTDVLFGVVKTAQKRRKELGKLPLKVIV 220
Query: 213 MSATLDAGKFQQYFDNAPLMNVPGRTHPVEIFYTPEP 249
MSAT+D F QYF+ AP++ + GR HP++IFYT +P
Sbjct: 221 MSATMDVDLFSQYFNRAPVLYLEGRQHPIQIFYTKQP 257
Score = 32.7 bits (73), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 264 PNEAKKAADDAKMRFAHIDGDHLTLLNVYHAFKQRFG 300
P + + +F +GDH+TLLN+Y FK G
Sbjct: 529 PPARRDEVQSVRKKFISSEGDHITLLNIYRTFKNIGG 565
>sp|Q9H6R0|DHX33_HUMAN Putative ATP-dependent RNA helicase DHX33 OS=Homo sapiens GN=DHX33
PE=1 SV=2
Length = 707
Score = 204 bits (518), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 103/212 (48%), Positives = 146/212 (68%), Gaps = 9/212 (4%)
Query: 43 TGYPYTPRYHELHRKRITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYS 102
+ PY P EL R+ +LP+F+ R + + L VL+GETGSGKTTQIPQ+ E
Sbjct: 59 SASPY-PEAVELQRR--SLPIFQARGQLLAQLRNLDNAVLIGETGSGKTTQIPQYLYEGG 115
Query: 103 KSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRFEDCSSPKTVLKYMTDGM 162
S +A TQPRRVAA+S+A RVS+E +LG+ VGY++RF+D +S T +K++TDGM
Sbjct: 116 ISRQG-IIAVTQPRRVAAISLATRVSDEKRTELGKLVGYTVRFDDVTSEDTRIKFLTDGM 174
Query: 163 LLREGMSDPMLENYQVILLDEAHERTLATDILMGVLKEVIKQRAD-----LKLVIMSATL 217
LLRE +SD +L Y ++LDEAHERT+ TD+L GV+K K+R + LK+++MSAT+
Sbjct: 175 LLREAISDSLLRKYSCVILDEAHERTIHTDVLFGVVKAAQKRRKELGKLPLKVIVMSATM 234
Query: 218 DAGKFQQYFDNAPLMNVPGRTHPVEIFYTPEP 249
D F QYF+ AP++ + GR HP+++FYT +P
Sbjct: 235 DVDLFSQYFNGAPVLYLEGRQHPIQVFYTKQP 266
Score = 33.5 bits (75), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 264 PNEAKKAADDAKMRFAHIDGDHLTLLNVYHAFKQRFG 300
P ++ + +F +GDH+TLLN+Y FK G
Sbjct: 538 PPSRREEVQGVRKKFISSEGDHMTLLNIYRTFKNLGG 574
>sp|Q8BZS9|DHX32_MOUSE Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX32
OS=Mus musculus GN=Dhx32 PE=2 SV=2
Length = 744
Score = 192 bits (488), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 102/248 (41%), Positives = 160/248 (64%), Gaps = 4/248 (1%)
Query: 1 MSKRRLDVIDPYITKKNREERLATVNASVSTSIA-SNLQVNPFTGYPYTPRYHELHRKRI 59
M + LD + K+ E L + + +A +L++NPF G PY+ RY++L ++R
Sbjct: 1 MDEEELDHPNASPEKRYFPESLDSSDGDEEGVLACEDLELNPFDGLPYSSRYYKLLKERE 60
Query: 60 TLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAK--AVACTQPRR 117
LP+++ + FM L QNQ +V+ G++ GK++Q+PQWC EY S+ + V CTQ +
Sbjct: 61 ELPIWKEKYSFMESLLQNQVVVVSGDSKCGKSSQVPQWCAEYCLSIHYQHGGVICTQAHK 120
Query: 118 VAAMSVAQRVSEEMDCQLGQEVGYSIRFEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQ 177
A+ +A RV++EMD +G EVGY I FE+C + +T+L+Y TD ML RE MS+P L +Y
Sbjct: 121 QTAVQLALRVADEMDVNIGHEVGYVIPFENCCTTETILRYCTDDMLQREMMSNPFLGSYG 180
Query: 178 VILLDEAHERTLATDILMGVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGR 237
VI+LD+ HER+LATD+L+G+LK+V+ R +LKL++ + L K Y+ + P++ V +
Sbjct: 181 VIILDDVHERSLATDVLLGLLKDVLLARPELKLIVNCSPLLTSKLSSYYGDVPVIEVRNK 240
Query: 238 THPVEIFY 245
HPVE+ Y
Sbjct: 241 -HPVEVVY 247
Score = 39.7 bits (91), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 258 PQCFTR-PNEAKKAADDAKMRFAHIDGDHLTLLNVYHAFK 296
P CF P+ A++AA F H +GDH TL+NVY+A++
Sbjct: 517 PSCFLHVPHGAEEAAVTCWKTFLHPEGDHFTLINVYNAYQ 556
>sp|Q5XH12|DHX32_XENLA Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX32
OS=Xenopus laevis GN=dhx32 PE=2 SV=1
Length = 748
Score = 192 bits (487), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 96/244 (39%), Positives = 153/244 (62%), Gaps = 3/244 (1%)
Query: 9 IDPYITKKNREERLATVNASVSTSIASNLQVNPFTGYPYTPRYHELHRKRITLPVFEYRT 68
ID I+ + T ++ V ++L++NPF G PY+ R+++L ++R TLP+++ +
Sbjct: 12 IDELISDEKSCCLDVTDSSDVEGDELNDLELNPFDGLPYSSRFYKLLKERETLPIWKIKY 71
Query: 69 EFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEY--SKSVGAKAVACTQPRRVAAMSVAQR 126
+F+ LA NQ +V+ SGK++QIPQWC EY + AV CTQ + A+ +A R
Sbjct: 72 DFLEHLAHNQIVVVSAGPKSGKSSQIPQWCAEYCLAGHYQHGAVVCTQAHKQTAVWLAMR 131
Query: 127 VSEEMDCQLGQEVGYSIRFEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHE 186
V++EMD +G EVGY + FE+C + +T+L+Y TD ML RE MS+P+L +Y V+++D+ +E
Sbjct: 132 VADEMDVNIGHEVGYIVPFENCCTSETILRYCTDEMLRREMMSNPLLSSYGVVIIDDVYE 191
Query: 187 RTLATDILMGVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRTHPVEIFYT 246
R ++TD+L+ LK + R +LK+VI++ +G Y+ NAPL+ TH VE YT
Sbjct: 192 RFVSTDVLLSFLKVIAVSRPELKVVIITCPSLSGTLVSYYGNAPLVEAEN-THSVESVYT 250
Query: 247 PEPP 250
P
Sbjct: 251 TSLP 254
Score = 40.0 bits (92), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 251 LGAGPWLPQCFTR-PNEAKKAADDAKMRFAHIDGDHLTLLNVYHAFKQ 297
L A P CF P EAK+ K +F H +GDH TL+N+Y+ ++Q
Sbjct: 511 LAAMVTAPNCFIDLPPEAKELDLIGKGKFFHPEGDHFTLINIYNEYEQ 558
>sp|Q8IX18|DHX40_HUMAN Probable ATP-dependent RNA helicase DHX40 OS=Homo sapiens GN=DHX40
PE=1 SV=2
Length = 779
Score = 190 bits (482), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 90/187 (48%), Positives = 130/187 (69%), Gaps = 6/187 (3%)
Query: 60 TLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVA 119
T P+ + R + + + N +++ G TGSGKTTQ+P++ E S + TQPR+VA
Sbjct: 52 TFPIQKQRKKIIQAVRDNSFLIVTGNTGSGKTTQLPKYLYEAGFSQHG-MIGVTQPRKVA 110
Query: 120 AMSVAQRVSEEMDCQLGQEVGYSIRFEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVI 179
A+SVAQRV+EEM C LG +VGY +RF+DCSS +T +KYMTDG LL+ + DP L + VI
Sbjct: 111 AISVAQRVAEEMKCTLGSKVGYQVRFDDCSSKETAIKYMTDGCLLKHILGDPNLTKFSVI 170
Query: 180 LLDEAHERTLATDILMGVLKEVIKQRA-----DLKLVIMSATLDAGKFQQYFDNAPLMNV 234
+LDEAHERTL TDIL G+LK++ ++++ LK+V+MSAT++ K +F N P+ ++
Sbjct: 171 ILDEAHERTLTTDILFGLLKKLFQEKSPNRKEHLKVVVMSATMELAKLSAFFGNCPIFDI 230
Query: 235 PGRTHPV 241
PGR +PV
Sbjct: 231 PGRLYPV 237
>sp|Q5R864|DHX40_PONAB Probable ATP-dependent RNA helicase DHX40 OS=Pongo abelii GN=DHX40
PE=2 SV=1
Length = 779
Score = 189 bits (481), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 90/187 (48%), Positives = 130/187 (69%), Gaps = 6/187 (3%)
Query: 60 TLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVA 119
T P+ + R + + + N +++ G TGSGKTTQ+P++ E S + TQPR+VA
Sbjct: 52 TFPIQKQRKKIIQAVRDNSFLIVTGNTGSGKTTQLPKYLYEAGFSQHG-MIGVTQPRKVA 110
Query: 120 AMSVAQRVSEEMDCQLGQEVGYSIRFEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVI 179
A+SVAQRV+EEM C LG +VGY +RF+DCSS +T +KYMTDG LL+ + DP L + VI
Sbjct: 111 AISVAQRVAEEMKCTLGSKVGYQVRFDDCSSKETAIKYMTDGCLLKHILGDPNLTKFSVI 170
Query: 180 LLDEAHERTLATDILMGVLKEVIKQRA-----DLKLVIMSATLDAGKFQQYFDNAPLMNV 234
+LDEAHERTL TDIL G+LK++ ++++ LK+V+MSAT++ K +F N P+ ++
Sbjct: 171 ILDEAHERTLTTDILFGLLKKLFQEKSPNRKEHLKVVVMSATMELAKLSAFFGNCPIFDI 230
Query: 235 PGRTHPV 241
PGR +PV
Sbjct: 231 PGRLYPV 237
>sp|Q7L7V1|DHX32_HUMAN Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX32
OS=Homo sapiens GN=DHX32 PE=1 SV=1
Length = 743
Score = 189 bits (481), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 95/217 (43%), Positives = 145/217 (66%), Gaps = 3/217 (1%)
Query: 34 ASNLQVNPFTGYPYTPRYHELHRKRITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQ 93
+L++NPF G PY+ RY++L ++R LP+++ + FM L QNQ +++ G+ GK+ Q
Sbjct: 35 CEDLELNPFDGLPYSSRYYKLLKEREDLPIWKEKYSFMENLLQNQIVIVSGDAKCGKSAQ 94
Query: 94 IPQWCVEYSKSVGAK--AVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRFEDCSSP 151
+PQWC EY S+ + V CTQ + + +A RV++EMD +G EVGY I FE+C +
Sbjct: 95 VPQWCAEYCLSIHYQHGGVICTQVHKQTVVQLALRVADEMDVNIGHEVGYVIPFENCCTN 154
Query: 152 KTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILMGVLKEVIKQRADLKLV 211
+T+L+Y TD ML RE MS+P L +Y VI+LD+ HER++ATD+L+G+LK+V+ R +LKL+
Sbjct: 155 ETILRYCTDDMLQREMMSNPFLGSYGVIILDDIHERSIATDVLLGLLKDVLLARPELKLI 214
Query: 212 IMSATLDAGKFQQYFDNAPLMNVPGRTHPVEIFYTPE 248
I S+ K Y+ N P++ V + HPVE+ Y E
Sbjct: 215 INSSPHLISKLNSYYGNVPVIEVKNK-HPVEVVYLSE 250
Score = 37.4 bits (85), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 258 PQCFTR-PNEAKKAADDAKMRFAHIDGDHLTLLNVYHAFK 296
P CF+ P+ A++AA F H +GDH TL+++Y A++
Sbjct: 516 PNCFSHVPHGAEEAALTCWKTFLHPEGDHFTLISIYKAYQ 555
>sp|Q5XI69|DHX40_RAT Probable ATP-dependent RNA helicase DHX40 OS=Rattus norvegicus
GN=Dhx40 PE=2 SV=1
Length = 779
Score = 189 bits (481), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 90/187 (48%), Positives = 129/187 (68%), Gaps = 6/187 (3%)
Query: 60 TLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVA 119
T P+ + R + + + N +++ G TGSGKTTQ+P++ E S + TQPR+VA
Sbjct: 52 TFPIQKQRKKLIQAVRDNSFLIVTGNTGSGKTTQLPKYLYEAGFSQHG-MIGVTQPRKVA 110
Query: 120 AMSVAQRVSEEMDCQLGQEVGYSIRFEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVI 179
A+SVAQRV+EEM C LG +VGY +RF+DCSS +T +KYMTDG LL+ + DP L + VI
Sbjct: 111 AISVAQRVAEEMKCTLGSKVGYQVRFDDCSSKETAIKYMTDGCLLKHILGDPNLNKFSVI 170
Query: 180 LLDEAHERTLATDILMGVLKEVIKQRA-----DLKLVIMSATLDAGKFQQYFDNAPLMNV 234
+LDEAHERTL TDIL G+LK++ + ++ LK+V+MSAT++ K +F N P+ ++
Sbjct: 171 ILDEAHERTLTTDILFGLLKKLFQDKSPNRKEHLKVVVMSATMELAKLSAFFGNCPIFDI 230
Query: 235 PGRTHPV 241
PGR +PV
Sbjct: 231 PGRLYPV 237
>sp|Q6PE54|DHX40_MOUSE Probable ATP-dependent RNA helicase DHX40 OS=Mus musculus GN=Dhx40
PE=2 SV=1
Length = 779
Score = 189 bits (480), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 90/187 (48%), Positives = 129/187 (68%), Gaps = 6/187 (3%)
Query: 60 TLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVA 119
T P+ + R + + + N +++ G TGSGKTTQ+P++ E S + TQPR+VA
Sbjct: 52 TFPIQKQRKKLIQAVRDNSFLIVTGNTGSGKTTQLPKYLYEAGFSQHG-MIGVTQPRKVA 110
Query: 120 AMSVAQRVSEEMDCQLGQEVGYSIRFEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVI 179
A+SVAQRV+EEM C LG +VGY +RF+DCSS +T +KYMTDG LL+ + DP L + VI
Sbjct: 111 AISVAQRVAEEMKCTLGSKVGYQVRFDDCSSKETAIKYMTDGCLLKHILGDPNLSKFSVI 170
Query: 180 LLDEAHERTLATDILMGVLKEVIKQRA-----DLKLVIMSATLDAGKFQQYFDNAPLMNV 234
+LDEAHERTL TDIL G+LK++ + ++ LK+V+MSAT++ K +F N P+ ++
Sbjct: 171 ILDEAHERTLTTDILFGLLKKLFQDKSPNRKEHLKVVVMSATMELAKLSAFFGNCPIFDI 230
Query: 235 PGRTHPV 241
PGR +PV
Sbjct: 231 PGRLYPV 237
>sp|P45018|HRPA_HAEIN ATP-dependent RNA helicase HrpA homolog OS=Haemophilus influenzae
(strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=hrpA PE=3
SV=2
Length = 1304
Score = 189 bits (480), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 91/190 (47%), Positives = 136/190 (71%), Gaps = 4/190 (2%)
Query: 60 TLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYS-KSVGAKAVACTQPRRV 118
+LPV + + E L++++Q IV+ GETGSGKTTQ+P+ C+E ++G + TQPRR+
Sbjct: 82 SLPVSQRKVEIQKLISEHQVIVVAGETGSGKTTQLPKMCLELGFGNLGM--IGHTQPRRI 139
Query: 119 AAMSVAQRVSEEMDCQLGQEVGYSIRFEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQV 178
AA SVA R++EE++ +LG VGY +RF D S T +K MTDG+LL E +D L Y
Sbjct: 140 AARSVAARIAEELETELGGLVGYKVRFNDQISDNTQIKLMTDGILLAEIQNDRFLNQYSC 199
Query: 179 ILLDEAHERTLATDILMGVLKEVI-KQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGR 237
+++DEAHER+L D ++G LK+++ ++R DLKL+I SAT+D +F ++F+NAP++ V GR
Sbjct: 200 LIIDEAHERSLNNDFILGYLKQLLPRRRRDLKLIITSATIDVERFSKHFNNAPIIEVSGR 259
Query: 238 THPVEIFYTP 247
T+PVE+ Y P
Sbjct: 260 TYPVEVRYRP 269
>sp|Q9HE06|YK99_SCHPO Putative pre-mRNA-splicing factor ATP-dependent RNA helicase
C20H4.09 OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) GN=SPAC20H4.09 PE=3 SV=1
Length = 647
Score = 187 bits (476), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 89/198 (44%), Positives = 133/198 (67%), Gaps = 2/198 (1%)
Query: 54 LHRKRITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACT 113
L+ ++ LP+ +YR + + + QNQ +++G TG GKTTQIPQ+ E + + CT
Sbjct: 18 LNIQKKLLPITKYRNQLLYAVEQNQITIVLGHTGCGKTTQIPQFLYEAGWASQNGIIGCT 77
Query: 114 QPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRFEDCSSPKTVLKYMTDGMLLREGMSDPML 173
QPRR+ A SV++RVS E++ G GYSI+F+ S KT +KYMTDG+LL E DP+L
Sbjct: 78 QPRRLVAKSVSERVSLELNSPPGSLCGYSIQFDHNVSEKTKIKYMTDGILLNEIFFDPLL 137
Query: 174 ENYQVILLDEAHERTLATDILMGVLKEVIKQRADLKLVIMSATLDAGKFQQYF--DNAPL 231
E Y +++LDE HERTL+TD+L+GVLK ++++R D +LV+ SA++DA K Q+F D
Sbjct: 138 ERYSIVILDEVHERTLSTDLLLGVLKRILEKRNDFRLVLSSASVDANKLSQFFGQDKVCT 197
Query: 232 MNVPGRTHPVEIFYTPEP 249
M++ G+ PVE + +P
Sbjct: 198 MSIEGKLFPVETLFLQKP 215
>sp|Q9DBV3|DHX34_MOUSE Probable ATP-dependent RNA helicase DHX34 OS=Mus musculus GN=Dhx34
PE=2 SV=2
Length = 1145
Score = 186 bits (471), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 87/199 (43%), Positives = 131/199 (65%), Gaps = 4/199 (2%)
Query: 50 RYHELHRKRITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKA 109
R +L R+R LP+ +Y + L ++Q +V+ G+TG GK+TQ+PQ+ + + G
Sbjct: 153 RLAKLQRERAALPIAQYGNRILQTLKEHQVVVVAGDTGCGKSTQVPQYLL----AAGFSH 208
Query: 110 VACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRFEDCSSPKTVLKYMTDGMLLREGMS 169
VACTQPRR+A +S+A+RV E Q G +VGY IRFE S T + ++T G+LLR+
Sbjct: 209 VACTQPRRIACISLAKRVGFESLSQYGSQVGYQIRFESTRSAATKIVFLTVGLLLRQIQR 268
Query: 170 DPMLENYQVILLDEAHERTLATDILMGVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNA 229
+P L YQV+++DE HER L D L+GVL+ ++ QR DLK+++MSAT++ F YF +A
Sbjct: 269 EPSLPQYQVLIVDEVHERHLHNDFLLGVLQRLLPQRPDLKVILMSATINISLFSSYFSHA 328
Query: 230 PLMNVPGRTHPVEIFYTPE 248
P++ VPGR P+ + Y P+
Sbjct: 329 PVVQVPGRLFPITVVYQPQ 347
>sp|P43329|HRPA_ECOLI ATP-dependent RNA helicase HrpA OS=Escherichia coli (strain K12)
GN=hrpA PE=3 SV=3
Length = 1300
Score = 185 bits (469), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 85/188 (45%), Positives = 130/188 (69%), Gaps = 1/188 (0%)
Query: 60 TLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVA 119
LPV + + + + + +Q +++ GETGSGKTTQ+P+ C+E + + + TQPRR+A
Sbjct: 76 NLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKG-LIGHTQPRRLA 134
Query: 120 AMSVAQRVSEEMDCQLGQEVGYSIRFEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVI 179
A +VA R++EE+ + G +GY +RF D S T++K MTDG+LL E D +L Y I
Sbjct: 135 ARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILLAEIQQDRLLMQYDTI 194
Query: 180 LLDEAHERTLATDILMGVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRTH 239
++DEAHER+L D L+G LKE++ +R DLK++I SAT+D +F ++F+NAP++ V GRT+
Sbjct: 195 IIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSRHFNNAPIIEVSGRTY 254
Query: 240 PVEIFYTP 247
PVE+ Y P
Sbjct: 255 PVEVRYRP 262
>sp|Q14147|DHX34_HUMAN Probable ATP-dependent RNA helicase DHX34 OS=Homo sapiens GN=DHX34
PE=1 SV=2
Length = 1143
Score = 184 bits (467), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 86/199 (43%), Positives = 130/199 (65%), Gaps = 4/199 (2%)
Query: 50 RYHELHRKRITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKA 109
R +L R+R LP+ +Y + L ++Q +V+ G+TG GK+TQ+PQ+ + + G
Sbjct: 151 RLAKLQRERAALPIAQYGNRILQTLKEHQVVVVAGDTGCGKSTQVPQYLL----AAGFSH 206
Query: 110 VACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRFEDCSSPKTVLKYMTDGMLLREGMS 169
VACTQPRR+A +S+A+RV E Q G +VGY IRFE S T + ++T G+LLR+
Sbjct: 207 VACTQPRRIACISLAKRVGFESLSQYGSQVGYQIRFESTRSAATKIVFLTVGLLLRQIQR 266
Query: 170 DPMLENYQVILLDEAHERTLATDILMGVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNA 229
+P L Y+V+++DE HER L D L+GVL+ ++ R DLK+++MSAT++ F YF NA
Sbjct: 267 EPSLPQYEVLIVDEVHERHLHNDFLLGVLQRLLPTRPDLKVILMSATINISLFSSYFSNA 326
Query: 230 PLMNVPGRTHPVEIFYTPE 248
P++ VPGR P+ + Y P+
Sbjct: 327 PVVQVPGRLFPITVVYQPQ 345
>sp|O17438|DHX15_STRPU Putative pre-mRNA-splicing factor ATP-dependent RNA helicase PRP1
(Fragment) OS=Strongylocentrotus purpuratus GN=PRP1 PE=2
SV=1
Length = 455
Score = 178 bits (452), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 83/95 (87%), Positives = 90/95 (94%)
Query: 155 LKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILMGVLKEVIKQRADLKLVIMS 214
+KYMTDGMLLREGM+DP+LE Y VILLDEAHERT+ATDILMG+LKEV KQR+DLKLV+MS
Sbjct: 1 IKYMTDGMLLREGMTDPLLERYGVILLDEAHERTVATDILMGLLKEVEKQRSDLKLVVMS 60
Query: 215 ATLDAGKFQQYFDNAPLMNVPGRTHPVEIFYTPEP 249
ATLDAGKFQ YFDNAPLM VPGRTHPVEIFYTPEP
Sbjct: 61 ATLDAGKFQHYFDNAPLMTVPGRTHPVEIFYTPEP 95
Score = 85.9 bits (211), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 37/41 (90%), Positives = 39/41 (95%)
Query: 257 LPQCFTRPNEAKKAADDAKMRFAHIDGDHLTLLNVYHAFKQ 297
+PQCF RPNEAKK AD+AKMRFAHIDGDHLTLLNVYHAFKQ
Sbjct: 364 VPQCFLRPNEAKKLADEAKMRFAHIDGDHLTLLNVYHAFKQ 404
>sp|Q7Z478|DHX29_HUMAN ATP-dependent RNA helicase DHX29 OS=Homo sapiens GN=DHX29 PE=1 SV=2
Length = 1369
Score = 178 bits (452), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 86/215 (40%), Positives = 142/215 (66%), Gaps = 9/215 (4%)
Query: 40 NPFTGYPYTPRYHELHRKRITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCV 99
N F TP+Y +L ++R LPVF++R + L +++ +V+ GETGSGK+TQ+P + +
Sbjct: 551 NLFRKLQSTPKYQKLLKERQQLPVFKHRDSIVETLKRHRVVVVAGETGSGKSTQVPHFLL 610
Query: 100 E---YSKSVGAKA-VACTQPRRVAAMSVAQRVSEEMDCQLG-----QEVGYSIRFEDCSS 150
E ++ +K + CTQPRR++A+S+A RV +E+ C+ G GY IR E +
Sbjct: 611 EDLLLNEWEASKCNIVCTQPRRISAVSLANRVCDELGCENGPGGRNSLCGYQIRMESRAC 670
Query: 151 PKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILMGVLKEVIKQRADLKL 210
T L Y T G+LLR+ D +L N +++DE HER++ +D L+ +LKE++++R+DL L
Sbjct: 671 ESTRLLYCTTGVLLRKLQEDGLLSNVSHVIVDEVHERSVQSDFLLIILKEILQKRSDLHL 730
Query: 211 VIMSATLDAGKFQQYFDNAPLMNVPGRTHPVEIFY 245
++MSAT+D+ KF YF + P++ + GR++PVE+F+
Sbjct: 731 ILMSATVDSEKFSTYFTHCPILRISGRSYPVEVFH 765
Score = 33.9 bits (76), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 20/37 (54%)
Query: 261 FTRPNEAKKAADDAKMRFAHIDGDHLTLLNVYHAFKQ 297
FT P K AD AK A D DHLT+ N Y +K+
Sbjct: 1111 FTTPIGRKDEADLAKSALAMADSDHLTIYNAYLGWKK 1147
>sp|Q6PGC1|DHX29_MOUSE ATP-dependent RNA helicase Dhx29 OS=Mus musculus GN=Dhx29 PE=2 SV=1
Length = 1365
Score = 177 bits (449), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 86/207 (41%), Positives = 139/207 (67%), Gaps = 9/207 (4%)
Query: 48 TPRYHELHRKRITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKS--V 105
TP+Y L ++R LPVF++R + L +++ +V+ GETGSGK+TQ+P + +E
Sbjct: 558 TPKYQRLLKERQQLPVFKHRDSIVETLKRHRVVVVAGETGSGKSTQVPHFLLEDLLLDEC 617
Query: 106 GAKA--VACTQPRRVAAMSVAQRVSEEMDCQLG-----QEVGYSIRFEDCSSPKTVLKYM 158
GA+ + CTQPRR++A+S+A RV EE+ C+ G GY IR E +S T L Y
Sbjct: 618 GARKCNIVCTQPRRISAVSLATRVCEELGCESGPGGRNSLCGYQIRMESRASESTRLLYC 677
Query: 159 TDGMLLREGMSDPMLENYQVILLDEAHERTLATDILMGVLKEVIKQRADLKLVIMSATLD 218
T G+LLR+ D +L + +++DE HER++ +D L+ +LKE++++R+DL L++MSAT+D
Sbjct: 678 TTGVLLRKLQEDGLLADVSHVIVDEVHERSVQSDFLLVILKEILQKRSDLHLILMSATVD 737
Query: 219 AGKFQQYFDNAPLMNVPGRTHPVEIFY 245
+ KF YF + P++ + GR++PVE+F+
Sbjct: 738 SDKFSTYFTHCPILRISGRSYPVEVFH 764
>sp|Q6P5D3|DHX57_MOUSE Putative ATP-dependent RNA helicase DHX57 OS=Mus musculus GN=Dhx57
PE=2 SV=2
Length = 1388
Score = 175 bits (444), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 89/199 (44%), Positives = 133/199 (66%), Gaps = 3/199 (1%)
Query: 50 RYHELHRKRITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKA 109
++H + ++R LP +E R + LL+++Q +V+ G TG GKTTQIPQ+ ++ S + +
Sbjct: 534 QFHAILQERQLLPAWEERETILKLLSKHQVVVISGMTGCGKTTQIPQFILDNSLNGPPER 593
Query: 110 VA---CTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRFEDCSSPKTVLKYMTDGMLLRE 166
VA CTQPRR++A+SVA+RV++E ++G VGY IR E S T L Y T G+LLR
Sbjct: 594 VANIICTQPRRISAISVAERVAKERAERVGLTVGYQIRLESVKSSATRLLYCTTGVLLRR 653
Query: 167 GMSDPMLENYQVILLDEAHERTLATDILMGVLKEVIKQRADLKLVIMSATLDAGKFQQYF 226
D L+ I++DE HERT +D L+ VLK+++ QRA L++++MSATLDAG F +YF
Sbjct: 654 LEGDATLQGVTHIIVDEVHERTEESDFLLLVLKDIVMQRATLQVILMSATLDAGLFSKYF 713
Query: 227 DNAPLMNVPGRTHPVEIFY 245
P++ +PGR PV+ F+
Sbjct: 714 SYCPVITIPGRAFPVDQFF 732
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.135 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 111,254,523
Number of Sequences: 539616
Number of extensions: 4531163
Number of successful extensions: 17381
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 103
Number of HSP's that attempted gapping in prelim test: 16955
Number of HSP's gapped (non-prelim): 313
length of query: 302
length of database: 191,569,459
effective HSP length: 117
effective length of query: 185
effective length of database: 128,434,387
effective search space: 23760361595
effective search space used: 23760361595
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)