Query psy2071
Match_columns 302
No_of_seqs 446 out of 3662
Neff 8.7
Searched_HMMs 46136
Date Fri Aug 16 23:35:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2071.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2071hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0925|consensus 100.0 1.2E-43 2.6E-48 321.5 16.2 254 39-295 24-296 (699)
2 KOG0922|consensus 100.0 1.6E-41 3.4E-46 319.1 19.1 243 51-295 40-300 (674)
3 COG1126 GlnQ ABC-type polar am 100.0 2.4E-42 5.1E-47 286.7 -0.3 187 58-248 9-228 (240)
4 KOG0923|consensus 100.0 9.3E-39 2E-43 298.4 17.3 244 51-295 254-516 (902)
5 COG1116 TauB ABC-type nitrate/ 100.0 2.2E-39 4.8E-44 276.1 3.6 172 59-233 11-205 (248)
6 COG1125 OpuBA ABC-type proline 100.0 2.2E-39 4.8E-44 274.5 -0.2 191 62-261 12-236 (309)
7 COG3842 PotA ABC-type spermidi 100.0 2E-39 4.4E-44 292.7 -1.2 189 57-248 11-229 (352)
8 KOG0924|consensus 100.0 1.9E-36 4.2E-41 283.5 16.6 240 54-295 348-607 (1042)
9 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 1.6E-38 3.5E-43 274.1 2.0 165 66-233 19-213 (254)
10 COG3839 MalK ABC-type sugar tr 100.0 1.2E-38 2.5E-43 286.3 -0.7 189 57-249 9-227 (338)
11 COG1118 CysA ABC-type sulfate/ 100.0 9.6E-38 2.1E-42 271.1 4.3 191 56-250 7-232 (345)
12 COG1127 Ttg2A ABC-type transpo 100.0 3.8E-38 8.3E-43 265.4 1.4 196 59-263 16-247 (263)
13 COG1135 AbcC ABC-type metal io 100.0 7.3E-38 1.6E-42 272.4 2.8 181 64-248 19-234 (339)
14 COG1120 FepC ABC-type cobalami 100.0 3.4E-37 7.3E-42 267.2 4.4 173 62-238 13-217 (258)
15 COG4555 NatA ABC-type Na+ tran 100.0 5.8E-37 1.2E-41 251.5 4.1 170 63-237 14-210 (245)
16 COG1643 HrpA HrpA-like helicas 100.0 3E-34 6.5E-39 283.3 18.8 249 42-295 30-297 (845)
17 COG4175 ProV ABC-type proline/ 100.0 1.4E-35 2.9E-40 258.3 5.7 179 67-248 44-257 (386)
18 COG1136 SalX ABC-type antimicr 100.0 2.9E-35 6.3E-40 250.4 6.8 169 64-237 18-219 (226)
19 COG1117 PstB ABC-type phosphat 100.0 1.1E-35 2.3E-40 246.2 3.9 174 60-238 16-226 (253)
20 COG1124 DppF ABC-type dipeptid 100.0 6.2E-36 1.3E-40 253.0 2.4 169 65-237 21-219 (252)
21 COG2884 FtsE Predicted ATPase 100.0 1.1E-34 2.4E-39 236.0 4.2 175 60-238 10-215 (223)
22 COG1131 CcmA ABC-type multidru 100.0 6.6E-35 1.4E-39 261.9 -0.2 176 59-238 12-215 (293)
23 COG0411 LivG ABC-type branched 100.0 1.1E-34 2.5E-39 245.5 0.7 187 57-247 10-241 (250)
24 COG3840 ThiQ ABC-type thiamine 100.0 5.8E-34 1.3E-38 230.3 4.7 165 70-238 18-208 (231)
25 COG1122 CbiO ABC-type cobalt t 100.0 2.5E-34 5.3E-39 248.7 2.7 170 65-238 18-217 (235)
26 COG3638 ABC-type phosphate/pho 100.0 7.9E-34 1.7E-38 238.7 4.5 170 64-237 17-225 (258)
27 COG4598 HisP ABC-type histidin 100.0 1.3E-33 2.7E-38 228.0 5.3 188 58-248 13-244 (256)
28 PRK13537 nodulation ABC transp 100.0 6.8E-35 1.5E-39 263.8 -2.4 174 60-237 16-215 (306)
29 cd03226 ABC_cobalt_CbiO_domain 100.0 4.9E-34 1.1E-38 244.3 1.3 169 65-237 14-203 (205)
30 TIGR00960 3a0501s02 Type II (G 100.0 6.2E-34 1.4E-38 245.6 1.8 168 66-237 18-215 (216)
31 PRK11650 ugpC glycerol-3-phosp 100.0 3.4E-34 7.5E-39 263.7 0.1 178 66-247 19-226 (356)
32 TIGR02314 ABC_MetN D-methionin 100.0 2.7E-34 5.8E-39 262.6 -1.0 169 66-238 20-219 (343)
33 TIGR01188 drrA daunorubicin re 100.0 6.3E-34 1.4E-38 257.4 1.0 169 66-238 8-202 (302)
34 COG4152 ABC-type uncharacteriz 100.0 1.6E-33 3.4E-38 237.5 3.2 174 56-233 7-204 (300)
35 PRK11432 fbpC ferric transport 100.0 2.1E-34 4.5E-39 264.5 -2.4 180 65-248 20-229 (351)
36 TIGR01186 proV glycine betaine 100.0 2.9E-34 6.3E-39 263.9 -1.4 169 66-238 8-208 (363)
37 PRK13536 nodulation factor exp 100.0 5.1E-34 1.1E-38 261.1 -0.7 176 58-237 48-249 (340)
38 COG4525 TauB ABC-type taurine 100.0 6.9E-33 1.5E-37 226.4 5.9 167 64-233 18-207 (259)
39 COG1137 YhbG ABC-type (unclass 100.0 8.4E-34 1.8E-38 232.6 -0.2 182 63-248 16-231 (243)
40 TIGR03265 PhnT2 putative 2-ami 100.0 3.6E-34 7.7E-39 263.3 -2.9 183 61-247 14-226 (353)
41 TIGR03258 PhnT 2-aminoethylpho 100.0 5.1E-34 1.1E-38 262.8 -2.2 179 65-247 19-230 (362)
42 cd03225 ABC_cobalt_CbiO_domain 100.0 2.6E-33 5.6E-38 240.8 2.1 167 66-236 16-210 (211)
43 PRK09452 potA putrescine/sperm 100.0 5.8E-34 1.3E-38 263.4 -2.1 184 61-248 24-237 (375)
44 cd03259 ABC_Carb_Solutes_like 100.0 1.3E-33 2.8E-38 243.1 -0.7 168 66-237 15-208 (213)
45 TIGR02673 FtsE cell division A 100.0 3.7E-33 8.1E-38 240.3 1.9 167 66-236 17-213 (214)
46 PRK10851 sulfate/thiosulfate t 100.0 1.2E-33 2.7E-38 259.8 -1.5 179 65-247 16-228 (353)
47 cd03261 ABC_Org_Solvent_Resist 100.0 2.8E-33 6.2E-38 244.5 0.8 169 66-238 15-215 (235)
48 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 3.4E-33 7.4E-38 241.3 1.2 167 66-237 19-217 (218)
49 cd03235 ABC_Metallic_Cations A 100.0 2.8E-33 6E-38 241.0 0.4 165 66-233 14-206 (213)
50 TIGR01288 nodI ATP-binding ABC 100.0 2.7E-33 5.9E-38 253.4 -0.2 169 65-237 18-212 (303)
51 cd03216 ABC_Carb_Monos_I This 100.0 2.6E-32 5.7E-37 225.3 4.9 144 66-237 15-159 (163)
52 cd03265 ABC_DrrA DrrA is the A 100.0 8.1E-33 1.8E-37 239.3 1.3 170 65-238 14-210 (220)
53 PRK11607 potG putrescine trans 100.0 2.2E-33 4.7E-38 259.9 -2.5 186 59-248 27-242 (377)
54 PRK11000 maltose/maltodextrin 100.0 2.7E-33 6E-38 259.2 -1.8 179 65-247 17-225 (369)
55 PRK13647 cbiO cobalt transport 100.0 1.6E-32 3.5E-37 245.0 3.0 169 66-238 20-216 (274)
56 cd03214 ABC_Iron-Siderophores_ 100.0 8.1E-33 1.8E-37 232.0 0.9 160 66-237 14-175 (180)
57 cd03218 ABC_YhbG The ABC trans 100.0 9.6E-33 2.1E-37 240.7 1.1 170 65-238 14-211 (232)
58 cd03219 ABC_Mj1267_LivG_branch 100.0 4.9E-33 1.1E-37 243.1 -0.8 170 65-238 14-221 (236)
59 PRK09536 btuD corrinoid ABC tr 100.0 1.1E-32 2.5E-37 256.3 1.4 170 64-237 16-216 (402)
60 cd03230 ABC_DR_subfamily_A Thi 100.0 5.5E-32 1.2E-36 225.6 5.2 155 66-237 15-172 (173)
61 TIGR02315 ABC_phnC phosphonate 100.0 1.6E-32 3.6E-37 240.8 2.1 170 65-238 16-224 (243)
62 cd03229 ABC_Class3 This class 100.0 2.3E-32 4.9E-37 228.9 2.8 155 66-236 15-177 (178)
63 cd03246 ABCC_Protease_Secretio 100.0 4.8E-32 1E-36 225.9 4.8 154 66-237 17-172 (173)
64 cd03215 ABC_Carb_Monos_II This 100.0 4.2E-32 9.1E-37 228.1 4.3 157 66-237 15-181 (182)
65 cd03266 ABC_NatA_sodium_export 100.0 1E-32 2.2E-37 238.2 0.6 169 66-238 20-214 (218)
66 cd03292 ABC_FtsE_transporter F 100.0 1.3E-32 2.8E-37 237.0 1.1 168 66-237 16-213 (214)
67 cd03224 ABC_TM1139_LivF_branch 100.0 1.3E-32 2.9E-37 238.1 1.2 169 66-238 15-210 (222)
68 cd03262 ABC_HisP_GlnQ_permease 100.0 2E-32 4.3E-37 235.6 2.2 168 66-237 15-212 (213)
69 cd03301 ABC_MalK_N The N-termi 100.0 9.1E-33 2E-37 237.8 -0.2 168 66-237 15-208 (213)
70 cd03268 ABC_BcrA_bacitracin_re 100.0 8.1E-33 1.8E-37 237.2 -0.6 169 65-237 14-203 (208)
71 PRK13637 cbiO cobalt transport 100.0 1.9E-32 4.1E-37 246.0 1.7 169 66-238 22-223 (287)
72 COG4608 AppF ABC-type oligopep 100.0 4E-32 8.7E-37 234.5 3.6 171 63-247 25-201 (268)
73 cd03256 ABC_PhnC_transporter A 100.0 2.3E-32 4.9E-37 239.6 2.0 169 66-238 16-223 (241)
74 COG0444 DppD ABC-type dipeptid 100.0 9.9E-33 2.2E-37 243.1 -0.4 182 64-249 18-247 (316)
75 cd03258 ABC_MetN_methionine_tr 100.0 1.4E-32 3.1E-37 239.8 0.5 169 66-238 20-219 (233)
76 PRK11153 metN DL-methionine tr 100.0 9.7E-33 2.1E-37 253.5 -0.6 169 66-238 20-219 (343)
77 PRK13651 cobalt transporter AT 100.0 2.8E-32 6.1E-37 246.5 2.2 169 66-238 22-243 (305)
78 PRK10908 cell division protein 100.0 2.2E-32 4.9E-37 236.8 1.5 168 66-237 17-214 (222)
79 cd03269 ABC_putative_ATPase Th 100.0 2E-32 4.4E-37 235.1 1.0 169 66-238 15-206 (210)
80 COG1123 ATPase components of v 100.0 2E-32 4.4E-37 257.4 0.9 171 63-237 303-507 (539)
81 cd03294 ABC_Pro_Gly_Bertaine T 100.0 2.3E-32 4.9E-37 243.4 1.1 174 61-238 34-239 (269)
82 TIGR03522 GldA_ABC_ATP gliding 100.0 1.2E-32 2.6E-37 248.9 -1.0 169 65-238 16-210 (301)
83 PRK13641 cbiO cobalt transport 100.0 3.4E-32 7.4E-37 244.4 1.6 169 66-238 22-223 (287)
84 TIGR01184 ntrCD nitrate transp 100.0 2.9E-32 6.3E-37 237.4 1.1 167 68-238 2-193 (230)
85 cd03296 ABC_CysA_sulfate_impor 100.0 2.8E-32 6.1E-37 238.8 1.0 169 66-238 17-215 (239)
86 PRK13643 cbiO cobalt transport 100.0 3.2E-32 7E-37 244.6 1.1 169 66-238 21-222 (288)
87 PRK15079 oligopeptide ABC tran 100.0 1.4E-32 3E-37 250.9 -1.3 170 65-238 35-240 (331)
88 PRK11247 ssuB aliphatic sulfon 100.0 2.9E-32 6.2E-37 240.8 0.7 170 65-238 26-212 (257)
89 cd03293 ABC_NrtD_SsuB_transpor 100.0 2.8E-32 6.2E-37 235.9 0.4 168 66-238 19-212 (220)
90 TIGR03410 urea_trans_UrtE urea 100.0 3.9E-32 8.5E-37 236.5 1.2 169 66-238 15-210 (230)
91 cd03298 ABC_ThiQ_thiamine_tran 100.0 6.2E-32 1.3E-36 232.3 2.4 166 69-238 16-207 (211)
92 PRK11264 putative amino-acid A 100.0 3.5E-32 7.6E-37 239.7 0.7 170 65-238 17-222 (250)
93 cd03263 ABC_subfamily_A The AB 100.0 4E-32 8.7E-37 234.9 1.0 168 66-238 17-210 (220)
94 cd03264 ABC_drug_resistance_li 100.0 4.8E-32 1.1E-36 232.9 1.5 166 66-237 15-206 (211)
95 COG4586 ABC-type uncharacteriz 100.0 2.6E-31 5.6E-36 227.4 5.8 170 64-237 37-234 (325)
96 PRK11144 modC molybdate transp 100.0 3.5E-32 7.5E-37 250.6 0.4 175 69-247 16-220 (352)
97 TIGR03415 ABC_choXWV_ATP choli 100.0 1.7E-32 3.7E-37 253.3 -1.6 174 61-238 34-243 (382)
98 cd03228 ABCC_MRP_Like The MRP 100.0 2.7E-31 6E-36 220.9 5.7 152 66-236 17-170 (171)
99 cd03257 ABC_NikE_OppD_transpor 100.0 6.1E-32 1.3E-36 234.9 1.8 169 66-238 20-224 (228)
100 PRK13634 cbiO cobalt transport 100.0 7.8E-32 1.7E-36 242.3 2.5 169 66-238 22-224 (290)
101 PRK11300 livG leucine/isoleuci 100.0 3.1E-32 6.8E-37 240.8 -0.1 170 65-238 19-232 (255)
102 PRK09493 glnQ glutamine ABC tr 100.0 5.3E-32 1.1E-36 237.2 1.2 169 66-238 16-214 (240)
103 cd03260 ABC_PstB_phosphate_tra 100.0 9.9E-32 2.2E-36 233.5 2.6 169 65-238 14-218 (227)
104 PRK11308 dppF dipeptide transp 100.0 4E-32 8.7E-37 247.6 -0.0 170 65-238 29-233 (327)
105 COG4619 ABC-type uncharacteriz 100.0 6.5E-31 1.4E-35 210.0 6.8 173 64-240 16-214 (223)
106 TIGR02211 LolD_lipo_ex lipopro 100.0 5.5E-32 1.2E-36 234.2 0.7 167 66-237 20-218 (221)
107 PRK13631 cbiO cobalt transport 100.0 1.2E-31 2.7E-36 243.7 2.9 169 66-238 41-254 (320)
108 PRK10070 glycine betaine trans 100.0 4.6E-32 9.9E-37 252.1 0.1 169 66-238 43-243 (400)
109 PRK13646 cbiO cobalt transport 100.0 8.3E-32 1.8E-36 241.8 1.8 169 66-238 22-224 (286)
110 PRK13652 cbiO cobalt transport 100.0 1E-31 2.2E-36 240.2 2.2 169 66-238 19-216 (277)
111 COG0410 LivF ABC-type branched 100.0 2.1E-31 4.6E-36 223.9 3.8 170 63-238 15-215 (237)
112 PRK11248 tauB taurine transpor 100.0 6.4E-32 1.4E-36 238.6 0.7 163 66-233 16-203 (255)
113 PRK13650 cbiO cobalt transport 100.0 1.9E-31 4.1E-36 238.6 3.6 168 66-238 22-218 (279)
114 PRK11614 livF leucine/isoleuci 100.0 6.1E-32 1.3E-36 236.4 0.3 169 65-237 19-214 (237)
115 cd03295 ABC_OpuCA_Osmoprotecti 100.0 6E-32 1.3E-36 237.1 0.2 169 66-238 16-214 (242)
116 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 100.0 1.2E-31 2.6E-36 232.5 2.0 169 61-238 32-220 (224)
117 TIGR03411 urea_trans_UrtD urea 100.0 9.8E-32 2.1E-36 235.8 1.2 169 65-238 16-220 (242)
118 PRK11124 artP arginine transpo 100.0 7.7E-32 1.7E-36 236.5 0.5 170 65-238 16-219 (242)
119 cd03213 ABCG_EPDR ABCG transpo 100.0 1.2E-31 2.6E-36 227.6 1.6 158 66-237 24-189 (194)
120 PRK13638 cbiO cobalt transport 100.0 1.3E-31 2.8E-36 238.9 1.8 170 65-238 15-214 (271)
121 PRK10895 lipopolysaccharide AB 100.0 1E-31 2.3E-36 235.5 1.2 170 65-238 17-215 (241)
122 PRK13548 hmuV hemin importer A 100.0 1.2E-31 2.6E-36 237.4 1.5 170 65-238 16-219 (258)
123 PRK11831 putative ABC transpor 100.0 1E-31 2.2E-36 239.3 0.8 169 66-238 22-222 (269)
124 PRK11022 dppD dipeptide transp 100.0 6.2E-32 1.3E-36 246.4 -0.9 170 65-238 21-232 (326)
125 PRK14250 phosphate ABC transpo 100.0 3.2E-31 6.9E-36 232.4 3.3 169 66-238 18-210 (241)
126 cd03247 ABCC_cytochrome_bd The 100.0 6.2E-31 1.3E-35 220.2 4.8 154 66-238 17-174 (178)
127 COG1129 MglA ABC-type sugar tr 100.0 1.9E-31 4E-36 249.3 1.7 180 54-237 11-222 (500)
128 PRK13644 cbiO cobalt transport 100.0 3.7E-31 8.1E-36 236.1 3.4 168 66-238 17-213 (274)
129 PRK09473 oppD oligopeptide tra 100.0 5.8E-32 1.3E-36 246.8 -1.9 169 65-237 30-239 (330)
130 PRK10619 histidine/lysine/argi 100.0 9.2E-32 2E-36 238.1 -0.6 170 65-238 19-230 (257)
131 TIGR02142 modC_ABC molybdenum 100.0 1.5E-31 3.2E-36 246.7 0.7 165 69-237 15-209 (354)
132 PRK13649 cbiO cobalt transport 100.0 2.5E-31 5.5E-36 238.1 2.1 169 66-238 22-223 (280)
133 PRK11231 fecE iron-dicitrate t 100.0 1.2E-31 2.6E-36 237.1 -0.0 170 65-238 16-216 (255)
134 TIGR02769 nickel_nikE nickel i 100.0 2.1E-31 4.6E-36 236.7 1.5 169 66-238 26-229 (265)
135 TIGR03608 L_ocin_972_ABC putat 100.0 7.9E-32 1.7E-36 230.7 -1.3 163 66-232 13-206 (206)
136 PRK10584 putative ABC transpor 100.0 2.2E-31 4.8E-36 231.5 1.3 168 66-238 25-224 (228)
137 PRK13635 cbiO cobalt transport 100.0 4.8E-31 1E-35 236.0 3.4 168 66-238 22-218 (279)
138 PRK13636 cbiO cobalt transport 100.0 2.7E-31 5.9E-36 238.1 1.8 169 66-238 21-220 (283)
139 PRK11629 lolD lipoprotein tran 100.0 1.5E-31 3.3E-36 233.3 0.1 168 66-238 24-223 (233)
140 PRK10575 iron-hydroxamate tran 100.0 2.8E-31 6.1E-36 235.9 1.6 170 65-238 25-226 (265)
141 COG4559 ABC-type hemin transpo 100.0 1.1E-30 2.4E-35 216.2 5.0 172 63-238 13-219 (259)
142 PRK13543 cytochrome c biogenes 100.0 1.9E-31 4.2E-36 229.7 0.5 166 65-233 25-211 (214)
143 TIGR02770 nickel_nikD nickel i 100.0 2.6E-31 5.6E-36 231.4 1.2 168 67-238 2-204 (230)
144 KOG0920|consensus 100.0 2E-29 4.4E-34 248.6 14.5 206 43-248 154-360 (924)
145 PRK15112 antimicrobial peptide 100.0 2.5E-31 5.5E-36 236.4 1.0 169 66-238 28-228 (267)
146 TIGR01978 sufC FeS assembly AT 100.0 1.4E-31 3E-36 234.9 -0.7 169 66-238 15-223 (243)
147 TIGR01277 thiQ thiamine ABC tr 100.0 3.7E-31 8E-36 227.8 1.9 167 68-238 15-207 (213)
148 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 2.3E-31 5.1E-36 232.6 0.7 167 66-237 16-209 (236)
149 TIGR03740 galliderm_ABC gallid 100.0 2.1E-31 4.5E-36 230.9 0.2 169 66-238 15-202 (223)
150 cd03267 ABC_NatA_like Similar 100.0 2.9E-31 6.4E-36 231.9 0.9 172 63-238 33-232 (236)
151 cd03222 ABC_RNaseL_inhibitor T 100.0 3E-30 6.6E-35 214.8 6.9 129 67-233 16-146 (177)
152 TIGR03005 ectoine_ehuA ectoine 100.0 1.5E-31 3.3E-36 236.0 -1.0 169 66-238 15-225 (252)
153 TIGR00972 3a0107s01c2 phosphat 100.0 3.9E-31 8.5E-36 232.7 1.7 168 66-238 16-221 (247)
154 cd03297 ABC_ModC_molybdenum_tr 100.0 3.7E-31 8E-36 228.0 1.5 164 69-237 16-209 (214)
155 PRK15093 antimicrobial peptide 100.0 2.3E-31 4.9E-36 243.3 -0.1 169 66-238 22-237 (330)
156 PRK10938 putative molybdenum t 100.0 1.2E-30 2.6E-35 251.0 4.9 169 65-237 17-212 (490)
157 PRK10771 thiQ thiamine transpo 100.0 5.1E-31 1.1E-35 229.8 2.0 166 69-238 17-208 (232)
158 cd03217 ABC_FeS_Assembly ABC-t 100.0 8.7E-31 1.9E-35 223.3 3.4 158 66-238 15-183 (200)
159 PRK11701 phnK phosphonate C-P 100.0 2.6E-31 5.5E-36 235.3 0.0 170 65-238 20-230 (258)
160 PRK13639 cbiO cobalt transport 100.0 3.7E-31 8E-36 236.4 1.0 169 66-238 17-215 (275)
161 TIGR03873 F420-0_ABC_ATP propo 100.0 3.1E-31 6.8E-36 234.5 0.5 170 65-238 15-215 (256)
162 PRK14247 phosphate ABC transpo 100.0 7.4E-31 1.6E-35 231.3 2.9 168 66-238 18-223 (250)
163 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 2E-30 4.2E-35 227.0 5.3 167 66-238 18-215 (238)
164 cd03223 ABCD_peroxisomal_ALDP 100.0 7.1E-31 1.5E-35 217.4 2.3 148 66-236 16-164 (166)
165 cd03234 ABCG_White The White s 100.0 2.2E-31 4.8E-36 231.2 -0.8 170 65-238 21-222 (226)
166 cd03221 ABCF_EF-3 ABCF_EF-3 E 100.0 3E-30 6.5E-35 208.6 5.8 128 66-236 15-143 (144)
167 PRK10762 D-ribose transporter 100.0 8.9E-31 1.9E-35 252.4 3.1 168 66-237 19-218 (501)
168 PRK15439 autoinducer 2 ABC tra 100.0 5.9E-31 1.3E-35 254.1 1.6 169 65-237 25-217 (510)
169 cd03231 ABC_CcmA_heme_exporter 100.0 6.4E-31 1.4E-35 224.4 1.6 163 66-232 15-198 (201)
170 cd03251 ABCC_MsbA MsbA is an e 100.0 2.4E-30 5.1E-35 225.9 5.2 167 66-238 17-214 (234)
171 cd03233 ABC_PDR_domain1 The pl 100.0 4.9E-31 1.1E-35 225.2 0.8 165 66-238 22-198 (202)
172 TIGR02323 CP_lyasePhnK phospho 100.0 4.2E-31 9E-36 233.3 0.3 169 66-238 18-227 (253)
173 PRK13645 cbiO cobalt transport 100.0 5E-31 1.1E-35 237.1 0.6 169 66-238 26-229 (289)
174 COG4604 CeuD ABC-type enteroch 100.0 1.7E-30 3.7E-35 212.7 3.6 175 59-237 9-213 (252)
175 PRK10253 iron-enterobactin tra 100.0 7.9E-31 1.7E-35 233.1 1.8 170 65-238 21-222 (265)
176 cd03232 ABC_PDR_domain2 The pl 100.0 3.9E-31 8.5E-36 224.1 -0.2 158 66-237 22-187 (192)
177 cd03252 ABCC_Hemolysin The ABC 100.0 2.2E-30 4.8E-35 226.5 4.3 167 66-238 17-214 (237)
178 cd03248 ABCC_TAP TAP, the Tran 100.0 4.6E-30 1E-34 222.9 5.9 166 66-237 29-225 (226)
179 PRK13640 cbiO cobalt transport 100.0 1.8E-30 3.8E-35 232.7 3.3 168 66-238 22-221 (282)
180 PRK14242 phosphate transporter 100.0 6.9E-31 1.5E-35 231.9 0.6 169 65-238 20-226 (253)
181 PRK09984 phosphonate/organopho 100.0 9.9E-31 2.1E-35 232.1 1.6 170 65-238 18-231 (262)
182 cd03237 ABC_RNaseL_inhibitor_d 100.0 2.1E-30 4.5E-35 227.6 3.5 153 73-233 21-190 (246)
183 cd03245 ABCC_bacteriocin_expor 100.0 2E-30 4.3E-35 224.3 3.3 166 66-237 19-215 (220)
184 TIGR03771 anch_rpt_ABC anchore 100.0 3.5E-30 7.6E-35 223.2 4.7 161 73-238 2-190 (223)
185 PRK14267 phosphate ABC transpo 100.0 7.3E-31 1.6E-35 231.8 0.4 169 65-238 18-226 (253)
186 TIGR02324 CP_lyasePhnL phospho 100.0 1.3E-30 2.9E-35 226.0 2.0 165 66-233 23-223 (224)
187 PRK10982 galactose/methyl gala 100.0 1E-30 2.3E-35 251.5 1.5 169 65-237 12-211 (491)
188 PRK09700 D-allose transporter 100.0 1.9E-30 4.1E-35 250.8 3.1 168 66-237 20-222 (510)
189 COG4181 Predicted ABC-type tra 100.0 1.6E-29 3.5E-34 202.6 7.8 170 64-238 23-224 (228)
190 PRK13538 cytochrome c biogenes 100.0 7.6E-31 1.7E-35 224.4 0.2 164 66-232 16-202 (204)
191 PRK09700 D-allose transporter 100.0 3E-30 6.6E-35 249.3 4.4 169 66-238 278-487 (510)
192 PRK14273 phosphate ABC transpo 100.0 8.7E-31 1.9E-35 231.4 0.5 169 65-238 21-227 (254)
193 cd03254 ABCC_Glucan_exporter_l 100.0 5.7E-30 1.2E-34 222.8 5.5 167 66-238 18-215 (229)
194 PRK13632 cbiO cobalt transport 100.0 1.7E-30 3.7E-35 231.6 2.2 168 66-238 24-220 (271)
195 PRK14268 phosphate ABC transpo 100.0 6.9E-31 1.5E-35 232.6 -0.4 168 66-238 27-231 (258)
196 PRK09544 znuC high-affinity zi 100.0 5.2E-31 1.1E-35 232.2 -1.2 163 66-233 19-195 (251)
197 PRK10247 putative ABC transpor 100.0 1.8E-30 3.9E-35 225.4 2.1 165 65-233 21-211 (225)
198 PRK13633 cobalt transporter AT 100.0 1.7E-30 3.6E-35 232.7 1.8 168 66-238 25-222 (280)
199 PRK13549 xylose transporter AT 100.0 1.5E-30 3.2E-35 251.2 1.5 169 65-237 19-220 (506)
200 PRK10261 glutathione transport 100.0 9.9E-31 2.1E-35 257.7 0.2 170 65-238 338-542 (623)
201 COG1123 ATPase components of v 100.0 1.5E-30 3.2E-35 244.8 1.3 182 65-249 23-248 (539)
202 cd03300 ABC_PotA_N PotA is an 100.0 1.5E-30 3.3E-35 226.9 1.2 170 65-238 14-209 (232)
203 PRK13648 cbiO cobalt transport 100.0 2.5E-30 5.3E-35 230.4 2.4 168 66-238 24-220 (269)
204 cd03253 ABCC_ATM1_transporter 100.0 7.9E-30 1.7E-34 222.9 5.4 167 66-238 16-213 (236)
205 cd03369 ABCC_NFT1 Domain 2 of 100.0 4.7E-30 1E-34 220.0 3.9 166 66-237 23-200 (207)
206 PRK14269 phosphate ABC transpo 100.0 1.9E-30 4.1E-35 228.2 1.4 169 65-238 16-219 (246)
207 PRK03695 vitamin B12-transport 100.0 2.4E-30 5.3E-35 227.7 2.0 168 66-238 11-211 (248)
208 COG3845 ABC-type uncharacteriz 100.0 3.2E-30 6.9E-35 236.9 2.5 178 56-237 9-217 (501)
209 PRK13642 cbiO cobalt transport 100.0 3.7E-30 8E-35 230.1 2.7 168 66-238 22-218 (277)
210 TIGR01166 cbiO cobalt transpor 100.0 1.3E-30 2.9E-35 220.5 -0.2 153 66-221 7-189 (190)
211 PRK15177 Vi polysaccharide exp 100.0 5.1E-30 1.1E-34 220.6 3.4 160 67-238 3-181 (213)
212 PRK10744 pstB phosphate transp 100.0 1.6E-30 3.4E-35 230.5 0.1 169 65-238 27-233 (260)
213 PRK14240 phosphate transporter 100.0 1.7E-30 3.6E-35 229.1 0.1 169 65-238 17-223 (250)
214 PRK14248 phosphate ABC transpo 100.0 1.8E-30 3.9E-35 231.2 0.2 170 64-238 34-241 (268)
215 PRK14259 phosphate ABC transpo 100.0 4.3E-30 9.4E-35 228.7 2.4 165 65-233 27-227 (269)
216 PRK11288 araG L-arabinose tran 100.0 4E-30 8.6E-35 247.9 2.3 169 65-237 18-217 (501)
217 PRK11288 araG L-arabinose tran 100.0 1.4E-29 3E-34 244.2 6.0 168 66-237 268-473 (501)
218 cd03299 ABC_ModC_like Archeal 100.0 2.1E-30 4.5E-35 226.5 0.1 169 66-238 14-208 (235)
219 TIGR00968 3a0106s01 sulfate AB 100.0 2E-30 4.4E-35 226.8 0.0 170 65-238 14-209 (237)
220 PRK13539 cytochrome c biogenes 100.0 2.3E-30 5E-35 221.9 0.4 163 66-233 17-199 (207)
221 PRK15056 manganese/iron transp 100.0 5E-30 1.1E-34 228.7 2.5 167 66-237 22-218 (272)
222 PRK10418 nikD nickel transport 100.0 3.2E-30 6.9E-35 227.8 1.1 169 66-238 18-219 (254)
223 PRK14262 phosphate ABC transpo 100.0 3.1E-30 6.7E-35 227.4 0.9 168 66-238 18-223 (250)
224 PRK13547 hmuV hemin importer A 100.0 1E-29 2.2E-34 226.4 4.1 169 66-238 16-233 (272)
225 TIGR02982 heterocyst_DevA ABC 100.0 3.4E-30 7.3E-35 222.9 0.9 167 66-237 20-218 (220)
226 PRK14272 phosphate ABC transpo 100.0 4.8E-30 1E-34 226.4 1.9 169 65-238 18-225 (252)
227 PRK14241 phosphate transporter 100.0 2.5E-30 5.3E-35 229.1 -0.3 165 65-233 18-221 (258)
228 PRK10261 glutathione transport 100.0 3.3E-30 7.1E-35 254.0 0.3 169 66-238 31-247 (623)
229 PRK10419 nikE nickel transport 100.0 4.7E-30 1E-34 228.4 1.0 169 66-238 27-230 (268)
230 PRK13546 teichoic acids export 100.0 6.2E-30 1.3E-34 226.7 1.7 169 66-238 39-221 (264)
231 cd03244 ABCC_MRP_domain2 Domai 100.0 3E-29 6.5E-34 217.1 6.0 167 66-238 19-215 (221)
232 cd03250 ABCC_MRP_domain1 Domai 100.0 1.4E-29 3E-34 216.5 3.8 159 66-236 20-203 (204)
233 PRK13549 xylose transporter AT 100.0 1.3E-29 2.8E-34 244.7 4.0 170 65-238 276-483 (506)
234 PRK14256 phosphate ABC transpo 100.0 4.3E-30 9.3E-35 226.7 0.2 169 65-238 18-225 (252)
235 TIGR02633 xylG D-xylose ABC tr 100.0 7.1E-30 1.5E-34 246.3 1.6 169 65-237 15-218 (500)
236 PRK14235 phosphate transporter 100.0 6.5E-30 1.4E-34 227.4 1.3 168 66-238 34-240 (267)
237 PRK14253 phosphate ABC transpo 100.0 5.9E-30 1.3E-34 225.5 0.7 169 65-238 17-222 (249)
238 PRK14257 phosphate ABC transpo 100.0 5.6E-30 1.2E-34 233.5 0.6 176 66-246 97-314 (329)
239 PRK14237 phosphate transporter 100.0 2E-30 4.3E-35 230.7 -2.4 170 64-238 33-240 (267)
240 PRK14270 phosphate ABC transpo 100.0 9E-30 1.9E-34 224.6 1.8 168 66-238 19-224 (251)
241 PRK14251 phosphate ABC transpo 100.0 5.6E-30 1.2E-34 225.9 0.4 169 65-238 18-224 (251)
242 PRK14238 phosphate transporter 100.0 4.7E-30 1E-34 228.8 -0.1 169 65-238 38-244 (271)
243 PRK14239 phosphate transporter 100.0 9.6E-30 2.1E-34 224.5 1.6 168 66-238 20-225 (252)
244 TIGR02633 xylG D-xylose ABC tr 100.0 2E-29 4.4E-34 243.0 4.0 170 65-238 274-481 (500)
245 PRK14249 phosphate ABC transpo 100.0 1.1E-29 2.4E-34 224.0 2.0 168 66-238 19-224 (251)
246 PRK14275 phosphate ABC transpo 100.0 7.7E-30 1.7E-34 229.0 0.9 169 65-238 53-259 (286)
247 CHL00131 ycf16 sulfate ABC tra 100.0 6.5E-30 1.4E-34 225.6 0.4 170 65-238 21-230 (252)
248 PRK10762 D-ribose transporter 100.0 2E-29 4.2E-34 243.1 3.6 169 66-238 267-473 (501)
249 cd03236 ABC_RNaseL_inhibitor_d 100.0 5.2E-29 1.1E-33 219.7 6.0 176 66-248 16-226 (255)
250 KOG0058|consensus 100.0 2.9E-29 6.3E-34 239.8 4.6 170 63-238 480-680 (716)
251 PRK13545 tagH teichoic acids e 100.0 1E-29 2.2E-34 240.0 1.4 163 66-238 39-221 (549)
252 PRK15439 autoinducer 2 ABC tra 100.0 1.4E-29 3.1E-34 244.4 2.4 169 66-238 278-481 (510)
253 PRK14274 phosphate ABC transpo 100.0 6.8E-30 1.5E-34 226.3 0.1 169 65-238 26-232 (259)
254 COG2274 SunT ABC-type bacterio 100.0 5.3E-29 1.2E-33 245.0 6.2 167 65-237 487-684 (709)
255 PRK10982 galactose/methyl gala 100.0 3.1E-29 6.8E-34 241.2 4.4 169 66-238 263-469 (491)
256 cd03290 ABCC_SUR1_N The SUR do 100.0 1.2E-29 2.6E-34 219.2 1.3 163 66-233 16-215 (218)
257 PRK09580 sufC cysteine desulfu 100.0 1.2E-29 2.7E-34 223.2 1.3 170 65-238 15-224 (248)
258 COG1134 TagH ABC-type polysacc 99.9 2.9E-29 6.2E-34 212.9 2.8 173 61-237 37-224 (249)
259 PRK14243 phosphate transporter 99.9 2.8E-29 6.1E-34 223.0 2.8 165 65-233 24-224 (264)
260 PRK15134 microcin C ABC transp 99.9 1.2E-29 2.7E-34 246.0 0.6 169 65-237 23-234 (529)
261 PRK14244 phosphate ABC transpo 99.9 1.5E-29 3.3E-34 223.1 1.0 168 66-238 20-226 (251)
262 PRK14265 phosphate ABC transpo 99.9 2.2E-29 4.8E-34 224.7 1.9 165 65-233 34-234 (274)
263 PRK14245 phosphate ABC transpo 99.9 2E-29 4.3E-34 222.2 1.5 168 66-238 18-223 (250)
264 TIGR03269 met_CoM_red_A2 methy 99.9 1.9E-29 4.1E-34 244.3 0.7 168 66-237 299-505 (520)
265 PRK13540 cytochrome c biogenes 99.9 1.1E-29 2.3E-34 216.6 -0.9 159 65-228 15-195 (200)
266 PRK14261 phosphate ABC transpo 99.9 3.4E-29 7.3E-34 221.1 2.2 169 65-238 20-226 (253)
267 cd00267 ABC_ATPase ABC (ATP-bi 99.9 7.2E-29 1.6E-33 203.5 3.9 140 66-233 14-154 (157)
268 COG1101 PhnK ABC-type uncharac 99.9 1.4E-28 3E-33 204.2 5.5 171 64-238 19-227 (263)
269 COG4161 ArtP ABC-type arginine 99.9 1.2E-28 2.5E-33 196.1 4.8 173 61-237 12-218 (242)
270 PRK15134 microcin C ABC transp 99.9 2.7E-29 5.9E-34 243.6 1.5 169 65-238 300-504 (529)
271 TIGR03269 met_CoM_red_A2 methy 99.9 3E-29 6.4E-34 243.0 1.6 168 66-237 15-246 (520)
272 cd03238 ABC_UvrA The excision 99.9 5.3E-29 1.1E-33 207.2 2.9 153 66-237 10-165 (176)
273 PRK14236 phosphate transporter 99.9 2.5E-29 5.4E-34 224.2 0.8 169 65-238 39-245 (272)
274 PRK14271 phosphate ABC transpo 99.9 2.4E-29 5.2E-34 224.7 0.6 174 60-238 30-240 (276)
275 PRK14255 phosphate ABC transpo 99.9 1.9E-29 4.1E-34 222.6 -0.3 169 65-238 19-225 (252)
276 COG4167 SapF ABC-type antimicr 99.9 6.7E-29 1.4E-33 201.2 2.3 181 63-247 25-241 (267)
277 cd03288 ABCC_SUR2 The SUR doma 99.9 1.6E-28 3.4E-33 217.4 4.7 167 66-238 36-232 (257)
278 TIGR01187 potA spermidine/putr 99.9 6.6E-29 1.4E-33 226.6 2.2 153 82-238 1-179 (325)
279 PRK14246 phosphate ABC transpo 99.9 3.9E-29 8.3E-34 221.2 0.6 173 61-238 20-230 (257)
280 PRK14263 phosphate ABC transpo 99.9 5.2E-29 1.1E-33 220.8 1.4 164 66-233 23-222 (261)
281 PRK14254 phosphate ABC transpo 99.9 4.4E-29 9.6E-34 223.9 0.6 169 65-238 53-258 (285)
282 PRK14260 phosphate ABC transpo 99.9 6.5E-29 1.4E-33 220.0 1.5 164 66-233 22-223 (259)
283 COG4148 ModC ABC-type molybdat 99.9 9.1E-29 2E-33 212.4 2.1 164 69-238 16-207 (352)
284 PRK13409 putative ATPase RIL; 99.9 8.4E-29 1.8E-33 241.5 1.8 158 67-233 355-528 (590)
285 COG4172 ABC-type uncharacteriz 99.9 9.2E-29 2E-33 221.7 1.8 179 64-247 300-518 (534)
286 cd03289 ABCC_CFTR2 The CFTR su 99.9 1.8E-28 4E-33 218.3 3.7 166 66-238 19-214 (275)
287 COG1119 ModF ABC-type molybden 99.9 5.5E-28 1.2E-32 204.9 6.2 172 63-238 43-251 (257)
288 KOG0926|consensus 99.9 1.4E-26 3E-31 220.8 16.3 230 49-279 243-506 (1172)
289 PRK11174 cysteine/glutathione 99.9 1.4E-28 2.9E-33 241.8 2.8 167 65-238 364-561 (588)
290 TIGR01189 ccmA heme ABC export 99.9 3.8E-29 8.2E-34 212.9 -1.0 154 66-222 15-190 (198)
291 COG4988 CydD ABC-type transpor 99.9 4.6E-28 1E-32 227.3 6.2 174 59-238 328-532 (559)
292 PRK14258 phosphate ABC transpo 99.9 8.2E-29 1.8E-33 219.6 0.9 165 66-233 22-225 (261)
293 KOG0055|consensus 99.9 1.8E-28 3.8E-33 246.4 3.4 169 63-237 365-564 (1228)
294 PRK14252 phosphate ABC transpo 99.9 1.6E-28 3.6E-33 218.2 2.8 169 65-238 30-238 (265)
295 TIGR01257 rim_protein retinal- 99.9 7.8E-29 1.7E-33 263.6 0.6 169 65-237 1953-2147(2272)
296 PRK13541 cytochrome c biogenes 99.9 7.6E-29 1.7E-33 210.5 0.3 155 70-228 19-191 (195)
297 PRK14264 phosphate ABC transpo 99.9 1.1E-28 2.3E-33 223.4 1.1 176 58-238 52-278 (305)
298 PRK14266 phosphate ABC transpo 99.9 1.5E-28 3.3E-33 216.6 1.7 168 66-238 18-223 (250)
299 TIGR01967 DEAH_box_HrpA ATP-de 99.9 4.1E-26 8.9E-31 233.9 19.0 192 56-248 61-252 (1283)
300 PRK11819 putative ABC transpor 99.9 2.2E-28 4.7E-33 238.5 2.2 166 65-237 21-237 (556)
301 TIGR03797 NHPM_micro_ABC2 NHPM 99.9 2.8E-28 6E-33 243.5 3.0 166 65-238 467-662 (686)
302 PRK15064 ABC transporter ATP-b 99.9 1.4E-28 2.9E-33 238.8 0.7 167 65-238 15-230 (530)
303 TIGR03796 NHPM_micro_ABC1 NHPM 99.9 3.8E-28 8.2E-33 243.4 3.7 166 65-238 493-689 (710)
304 PRK15064 ABC transporter ATP-b 99.9 2.6E-28 5.7E-33 236.8 2.3 164 65-237 333-512 (530)
305 TIGR03719 ABC_ABC_ChvD ATP-bin 99.9 3E-28 6.5E-33 237.4 2.2 166 65-237 19-235 (552)
306 PRK10636 putative ABC transpor 99.9 7E-28 1.5E-32 237.8 4.8 168 64-238 14-224 (638)
307 PRK10938 putative molybdenum t 99.9 3.4E-28 7.4E-33 234.0 2.4 175 60-238 269-481 (490)
308 PRK13409 putative ATPase RIL; 99.9 3.9E-28 8.4E-33 236.8 2.6 163 66-233 89-285 (590)
309 PRK11176 lipid transporter ATP 99.9 9.4E-28 2E-32 235.6 5.1 167 65-237 357-555 (582)
310 TIGR01257 rim_protein retinal- 99.9 2.5E-28 5.4E-33 259.7 0.3 168 65-237 944-1137(2272)
311 TIGR00958 3a01208 Conjugate Tr 99.9 6.5E-28 1.4E-32 241.2 3.0 166 65-238 495-691 (711)
312 COG4987 CydC ABC-type transpor 99.9 8.4E-28 1.8E-32 222.7 3.5 179 53-237 338-549 (573)
313 cd03291 ABCC_CFTR1 The CFTR su 99.9 6E-28 1.3E-32 215.7 2.4 160 66-238 52-236 (282)
314 PRK10636 putative ABC transpor 99.9 6.7E-28 1.5E-32 237.9 3.0 169 61-238 322-505 (638)
315 TIGR03375 type_I_sec_LssB type 99.9 9.7E-28 2.1E-32 239.8 3.4 167 66-238 480-677 (694)
316 PRK11147 ABC transporter ATPas 99.9 8.2E-28 1.8E-32 237.6 2.8 170 61-238 13-231 (635)
317 PRK10790 putative multidrug tr 99.9 1.7E-27 3.7E-32 234.2 5.1 167 66-238 356-552 (592)
318 PRK11160 cysteine/glutathione 99.9 2.4E-27 5.3E-32 232.0 6.1 168 65-238 354-551 (574)
319 PRK13657 cyclic beta-1,2-gluca 99.9 1.1E-27 2.3E-32 235.4 3.2 168 65-238 349-547 (588)
320 COG4107 PhnK ABC-type phosphon 99.9 8.6E-27 1.9E-31 187.6 7.8 168 67-238 22-230 (258)
321 TIGR01192 chvA glucan exporter 99.9 2.9E-27 6.4E-32 231.8 5.8 167 66-238 350-547 (585)
322 TIGR01842 type_I_sec_PrtD type 99.9 3.9E-27 8.3E-32 229.4 6.3 169 65-238 332-531 (544)
323 TIGR01193 bacteriocin_ABC ABC- 99.9 2.3E-27 5E-32 237.6 4.7 167 65-238 488-686 (708)
324 COG1132 MdlB ABC-type multidru 99.9 1.8E-27 3.9E-32 232.8 3.6 176 56-237 333-540 (567)
325 PRK11819 putative ABC transpor 99.9 1.6E-27 3.6E-32 232.3 3.3 164 61-233 334-516 (556)
326 TIGR02857 CydD thiol reductant 99.9 2.2E-27 4.7E-32 230.5 3.8 162 66-232 337-529 (529)
327 TIGR03719 ABC_ABC_ChvD ATP-bin 99.9 1.9E-27 4.1E-32 231.7 3.1 161 64-233 335-514 (552)
328 PRK10789 putative multidrug tr 99.9 4.2E-27 9.2E-32 230.2 5.2 167 66-238 330-527 (569)
329 TIGR01846 type_I_sec_HlyB type 99.9 7.5E-27 1.6E-31 233.4 5.5 167 66-238 472-669 (694)
330 PRK11147 ABC transporter ATPas 99.9 3.4E-27 7.4E-32 233.2 2.6 169 60-237 328-515 (635)
331 TIGR02868 CydC thiol reductant 99.9 4E-27 8.7E-32 228.7 3.0 149 66-219 350-529 (529)
332 TIGR02203 MsbA_lipidA lipid A 99.9 4.4E-27 9.4E-32 230.4 3.1 166 66-237 347-544 (571)
333 TIGR02204 MsbA_rel ABC transpo 99.9 4.9E-27 1.1E-31 230.3 3.3 167 66-238 355-552 (576)
334 COG4674 Uncharacterized ABC-ty 99.9 7.5E-27 1.6E-31 191.1 3.6 175 59-238 13-224 (249)
335 COG4172 ABC-type uncharacteriz 99.9 2.9E-27 6.3E-32 212.2 1.0 182 63-248 22-250 (534)
336 COG4618 ArpD ABC-type protease 99.9 1E-26 2.2E-31 214.0 4.4 165 66-238 351-549 (580)
337 TIGR01194 cyc_pep_trnsptr cycl 99.9 1.5E-26 3.2E-31 225.7 4.9 167 66-238 357-548 (555)
338 PLN03211 ABC transporter G-25; 99.9 2.3E-27 5E-32 234.1 -1.1 174 61-238 78-285 (659)
339 KOG0057|consensus 99.9 1.4E-26 3E-31 214.8 3.5 170 62-238 363-563 (591)
340 PTZ00265 multidrug resistance 99.9 2.4E-26 5.1E-31 243.1 5.6 168 65-237 399-656 (1466)
341 KOG0055|consensus 99.9 2.2E-26 4.8E-31 231.4 4.9 170 62-237 1001-1201(1228)
342 PLN03073 ABC transporter F fam 99.9 2.6E-26 5.6E-31 228.0 5.4 164 66-238 524-702 (718)
343 PRK11131 ATP-dependent RNA hel 99.9 8E-25 1.7E-29 223.9 16.3 192 56-249 68-260 (1294)
344 PTZ00265 multidrug resistance 99.9 1.3E-26 2.9E-31 245.0 3.1 174 56-233 1170-1432(1466)
345 PRK10522 multidrug transporter 99.9 3.4E-26 7.5E-31 222.8 4.4 168 66-238 338-527 (547)
346 COG0488 Uup ATPase components 99.9 8.7E-26 1.9E-30 215.8 6.2 167 60-236 12-226 (530)
347 PLN03232 ABC transporter C fam 99.9 1E-25 2.3E-30 239.8 6.3 168 65-238 1250-1447(1495)
348 PLN03130 ABC transporter C fam 99.9 1.3E-25 2.7E-30 239.6 6.3 166 66-237 1254-1449(1622)
349 PRK10535 macrolide transporter 99.9 2.4E-26 5.3E-31 227.4 0.8 168 66-238 23-221 (648)
350 TIGR00955 3a01204 The Eye Pigm 99.9 5.1E-26 1.1E-30 224.1 2.6 169 66-238 40-245 (617)
351 COG4133 CcmA ABC-type transpor 99.9 1.5E-25 3.2E-30 182.6 3.9 151 66-219 17-190 (209)
352 TIGR00954 3a01203 Peroxysomal 99.9 1E-25 2.2E-30 223.2 1.9 157 65-233 466-652 (659)
353 PLN03073 ABC transporter F fam 99.9 3.2E-25 6.9E-30 220.3 5.1 176 56-238 182-419 (718)
354 cd03270 ABC_UvrA_I The excisio 99.9 6.9E-25 1.5E-29 190.4 5.7 79 151-233 131-212 (226)
355 cd03278 ABC_SMC_barmotin Barmo 99.9 1.8E-25 3.9E-30 189.9 1.9 165 68-240 14-196 (197)
356 PTZ00243 ABC transporter; Prov 99.9 4.1E-25 8.8E-30 235.3 4.8 167 66-238 1325-1522(1560)
357 TIGR00957 MRP_assoc_pro multi 99.9 4.1E-25 8.9E-30 235.6 4.7 168 65-238 1300-1497(1522)
358 COG4778 PhnL ABC-type phosphon 99.9 1E-24 2.2E-29 174.9 2.8 168 60-233 23-226 (235)
359 KOG0059|consensus 99.9 2.4E-24 5.1E-29 219.1 5.0 168 66-237 580-775 (885)
360 PLN03140 ABC transporter G fam 99.9 7E-25 1.5E-29 231.3 0.4 170 65-237 894-1098(1470)
361 TIGR00956 3a01205 Pleiotropic 99.9 4.8E-25 1E-29 232.8 -0.8 167 65-236 777-979 (1394)
362 TIGR01271 CFTR_protein cystic 99.9 2.9E-24 6.3E-29 228.5 4.6 166 65-237 1233-1428(1490)
363 COG0396 sufC Cysteine desulfur 99.9 7.3E-24 1.6E-28 178.0 5.9 168 65-237 18-222 (251)
364 COG0488 Uup ATPase components 99.9 2.2E-24 4.7E-29 206.2 2.2 163 65-233 336-510 (530)
365 TIGR01271 CFTR_protein cystic 99.9 2.4E-24 5.2E-29 229.1 2.4 159 66-237 441-624 (1490)
366 TIGR00956 3a01205 Pleiotropic 99.9 9.6E-25 2.1E-29 230.6 -0.8 173 62-238 72-289 (1394)
367 PLN03140 ABC transporter G fam 99.9 1.8E-24 3.8E-29 228.3 0.4 172 63-238 177-416 (1470)
368 TIGR00957 MRP_assoc_pro multi 99.9 3.8E-24 8.3E-29 228.2 2.3 160 66-237 653-838 (1522)
369 KOG0056|consensus 99.9 9.4E-24 2E-28 193.4 3.1 170 62-237 549-749 (790)
370 PLN03130 ABC transporter C fam 99.9 8.4E-24 1.8E-28 225.7 2.6 159 66-237 632-816 (1622)
371 COG4136 ABC-type uncharacteriz 99.9 3.3E-24 7.1E-29 168.7 -1.0 161 60-223 11-199 (213)
372 cd03279 ABC_sbcCD SbcCD and ot 99.9 7.1E-23 1.5E-27 176.2 6.5 81 152-236 118-209 (213)
373 PLN03232 ABC transporter C fam 99.9 1.1E-23 2.4E-28 224.3 1.2 160 66-237 632-816 (1495)
374 PTZ00243 ABC transporter; Prov 99.9 1.3E-23 2.8E-28 223.9 1.3 159 66-237 675-858 (1560)
375 PRK11664 ATP-dependent RNA hel 99.9 2.3E-20 5.1E-25 187.3 19.8 188 60-249 3-191 (812)
376 cd03240 ABC_Rad50 The catalyti 99.9 2.1E-22 4.5E-27 172.1 4.0 160 73-237 19-200 (204)
377 TIGR01970 DEAH_box_HrpB ATP-de 99.9 1.4E-20 3.1E-25 188.6 17.5 186 61-248 1-187 (819)
378 PF00005 ABC_tran: ABC transpo 99.9 1E-23 2.2E-28 168.7 -4.7 118 69-189 3-137 (137)
379 KOG0061|consensus 99.8 7.1E-23 1.5E-27 200.5 -0.6 171 63-237 42-248 (613)
380 cd03272 ABC_SMC3_euk Eukaryoti 99.8 7.3E-22 1.6E-26 173.3 4.3 78 152-234 153-235 (243)
381 COG5265 ATM1 ABC-type transpor 99.8 1E-21 2.2E-26 177.5 4.6 171 61-237 273-474 (497)
382 COG4138 BtuD ABC-type cobalami 99.8 1.3E-21 2.8E-26 157.8 4.3 164 69-237 17-209 (248)
383 cd03271 ABC_UvrA_II The excisi 99.8 3.2E-21 6.9E-26 169.8 5.7 78 152-233 164-245 (261)
384 cd03274 ABC_SMC4_euk Eukaryoti 99.8 1.2E-20 2.7E-25 162.0 8.1 77 152-233 122-203 (212)
385 COG4615 PvdE ABC-type sideroph 99.8 8.3E-22 1.8E-26 176.7 0.2 181 53-238 324-526 (546)
386 KOG0054|consensus 99.8 2.7E-21 5.9E-26 198.8 2.7 160 66-238 536-720 (1381)
387 KOG0054|consensus 99.8 5.9E-21 1.3E-25 196.3 3.9 173 58-238 1149-1351(1381)
388 COG1245 Predicted ATPase, RNas 99.8 5.2E-21 1.1E-25 174.3 2.8 155 73-233 363-530 (591)
389 COG1129 MglA ABC-type sugar tr 99.8 8.6E-21 1.9E-25 177.9 3.6 174 61-238 269-479 (500)
390 KOG0927|consensus 99.8 1.3E-20 2.8E-25 174.9 4.6 163 65-233 404-580 (614)
391 cd03273 ABC_SMC2_euk Eukaryoti 99.8 1.7E-20 3.6E-25 165.5 4.5 76 153-233 162-242 (251)
392 KOG0062|consensus 99.8 5.7E-21 1.2E-25 176.3 1.0 157 64-233 93-269 (582)
393 cd03275 ABC_SMC1_euk Eukaryoti 99.8 2.9E-19 6.3E-24 157.2 10.2 81 153-237 151-236 (247)
394 KOG0927|consensus 99.8 2E-20 4.4E-25 173.6 2.0 174 54-233 78-293 (614)
395 cd03276 ABC_SMC6_euk Eukaryoti 99.8 8.3E-21 1.8E-25 161.4 -1.0 79 151-233 103-189 (198)
396 COG4178 ABC-type uncharacteriz 99.8 5E-20 1.1E-24 175.9 3.1 159 65-233 407-587 (604)
397 cd03280 ABC_MutS2 MutS2 homolo 99.8 1.6E-19 3.5E-24 153.9 5.0 144 69-237 19-167 (200)
398 KOG2355|consensus 99.7 5.7E-19 1.2E-23 146.0 3.2 168 67-238 30-226 (291)
399 cd03239 ABC_SMC_head The struc 99.7 8.3E-18 1.8E-22 140.5 7.8 74 157-234 94-172 (178)
400 COG4170 SapD ABC-type antimicr 99.7 1.7E-18 3.7E-23 143.7 1.8 170 64-238 20-237 (330)
401 PRK00635 excinuclease ABC subu 99.7 3.5E-18 7.7E-23 180.2 4.5 78 152-233 804-885 (1809)
402 COG1245 Predicted ATPase, RNas 99.7 1.4E-17 3E-22 152.1 7.1 157 74-233 97-287 (591)
403 PRK00349 uvrA excinuclease ABC 99.7 3.2E-18 6.9E-23 173.4 2.6 78 152-233 825-906 (943)
404 cd03227 ABC_Class2 ABC-type Cl 99.7 1.2E-17 2.7E-22 137.5 5.4 130 75-233 19-154 (162)
405 KOG0062|consensus 99.7 1.4E-17 3E-22 154.1 4.4 169 65-241 378-560 (582)
406 KOG0060|consensus 99.7 2E-17 4.3E-22 154.9 4.9 162 66-238 450-643 (659)
407 TIGR00630 uvra excinuclease AB 99.7 2.1E-17 4.6E-22 167.1 4.1 78 152-233 823-904 (924)
408 KOG0066|consensus 99.7 2.4E-17 5.2E-22 149.9 3.2 149 67-224 603-766 (807)
409 cd03277 ABC_SMC5_euk Eukaryoti 99.7 1.4E-16 3E-21 136.9 7.4 78 152-232 121-205 (213)
410 cd03243 ABC_MutS_homologs The 99.7 1.7E-16 3.7E-21 135.4 7.4 139 71-233 23-164 (202)
411 COG3845 ABC-type uncharacteriz 99.7 8.2E-17 1.8E-21 148.8 5.2 171 66-240 273-483 (501)
412 KOG0065|consensus 99.6 1.5E-17 3.3E-22 168.3 0.1 171 64-237 804-1009(1391)
413 cd03241 ABC_RecN RecN ATPase i 99.6 6.5E-16 1.4E-20 138.1 9.8 78 155-237 168-250 (276)
414 cd03285 ABC_MSH2_euk MutS2 hom 99.6 2.5E-16 5.5E-21 136.1 6.9 138 67-233 20-166 (222)
415 COG2401 ABC-type ATPase fused 99.6 6.5E-17 1.4E-21 146.3 2.8 163 64-233 396-583 (593)
416 cd03282 ABC_MSH4_euk MutS4 hom 99.6 2.2E-16 4.8E-21 134.6 5.1 139 67-228 19-160 (204)
417 cd03283 ABC_MutS-like MutS-lik 99.6 5.1E-16 1.1E-20 132.0 5.9 137 73-233 21-164 (199)
418 KOG0064|consensus 99.6 1.1E-16 2.5E-21 148.3 -0.3 147 66-223 497-673 (728)
419 smart00534 MUTSac ATPase domai 99.5 3.1E-14 6.7E-19 119.8 7.6 126 79-228 1-130 (185)
420 TIGR02858 spore_III_AA stage I 99.5 3.7E-14 7.9E-19 125.6 7.5 129 78-233 112-256 (270)
421 KOG0066|consensus 99.5 3E-15 6.5E-20 136.4 0.3 77 151-233 406-483 (807)
422 PHA02653 RNA helicase NPH-II; 99.5 2.2E-13 4.8E-18 134.2 13.2 180 66-249 168-366 (675)
423 KOG0921|consensus 99.5 5.4E-14 1.2E-18 136.7 7.7 194 53-248 369-566 (1282)
424 cd03284 ABC_MutS1 MutS1 homolo 99.5 5.4E-14 1.2E-18 121.1 5.1 135 67-233 21-166 (216)
425 cd03281 ABC_MSH5_euk MutS5 hom 99.5 2.5E-13 5.4E-18 116.8 9.1 123 78-226 30-161 (213)
426 TIGR01069 mutS2 MutS2 family p 99.4 3.2E-13 7E-18 135.4 5.9 131 70-223 314-449 (771)
427 KOG0063|consensus 99.4 2.5E-13 5.4E-18 123.6 4.0 158 68-233 353-531 (592)
428 PRK00409 recombination and DNA 99.3 1.5E-12 3.2E-17 131.0 7.6 136 76-233 326-464 (782)
429 cd03287 ABC_MSH3_euk MutS3 hom 99.3 3.1E-12 6.7E-17 110.4 5.8 132 67-223 21-158 (222)
430 cd03242 ABC_RecF RecF is a rec 99.3 4.3E-12 9.3E-17 113.1 6.2 75 155-237 181-268 (270)
431 KOG0065|consensus 99.3 1.1E-12 2.5E-17 133.5 1.6 170 64-237 128-339 (1391)
432 TIGR00630 uvra excinuclease AB 99.3 5.2E-12 1.1E-16 128.4 5.7 78 151-232 481-561 (924)
433 PRK00349 uvrA excinuclease ABC 99.3 4.2E-12 9E-17 129.3 4.8 78 151-232 483-563 (943)
434 PRK13695 putative NTPase; Prov 99.2 9.6E-12 2.1E-16 103.6 5.7 148 79-238 2-153 (174)
435 cd01124 KaiC KaiC is a circadi 99.2 1E-11 2.3E-16 104.2 4.3 142 79-233 1-163 (187)
436 PRK00635 excinuclease ABC subu 99.2 2.2E-11 4.7E-16 129.6 5.7 79 151-233 470-551 (1809)
437 KOG0063|consensus 99.1 5.4E-11 1.2E-15 108.6 6.1 156 74-233 97-287 (592)
438 PRK08533 flagellar accessory p 99.1 5.8E-11 1.3E-15 103.3 5.9 146 73-233 20-184 (230)
439 cd03286 ABC_MSH6_euk MutS6 hom 99.1 3.9E-11 8.4E-16 103.3 4.2 136 67-227 20-161 (218)
440 COG0178 UvrA Excinuclease ATPa 99.1 3.8E-11 8.1E-16 117.1 4.3 72 158-233 823-898 (935)
441 COG3910 Predicted ATPase [Gene 99.1 2.4E-10 5.3E-15 93.8 6.7 150 59-219 21-188 (233)
442 PF02463 SMC_N: RecF/RecN/SMC 99.1 1.8E-10 3.9E-15 99.5 6.3 72 157-233 136-212 (220)
443 TIGR02788 VirB11 P-type DNA tr 99.0 4.5E-10 9.8E-15 101.9 7.2 132 68-233 135-266 (308)
444 PTZ00132 GTP-binding nuclear p 99.0 2.3E-10 4.9E-15 98.4 4.5 43 162-207 157-205 (215)
445 cd01120 RecA-like_NTPases RecA 99.0 6.5E-10 1.4E-14 90.4 6.9 130 79-223 1-141 (165)
446 TIGR00634 recN DNA repair prot 99.0 7E-10 1.5E-14 108.7 6.9 73 156-233 439-516 (563)
447 TIGR00618 sbcc exonuclease Sbc 99.0 7.8E-10 1.7E-14 115.6 6.5 83 150-235 943-1036(1042)
448 PF13304 AAA_21: AAA domain; P 99.0 6.5E-10 1.4E-14 96.6 4.9 65 155-222 234-302 (303)
449 PRK06067 flagellar accessory p 98.9 1.3E-09 2.8E-14 95.1 5.7 151 73-233 21-186 (234)
450 PRK10869 recombination and rep 98.9 2.6E-09 5.6E-14 104.1 7.0 73 156-233 429-506 (553)
451 cd01128 rho_factor Transcripti 98.9 1.1E-09 2.4E-14 96.0 3.4 158 69-237 8-210 (249)
452 PRK06793 fliI flagellum-specif 98.9 3.5E-09 7.6E-14 99.2 6.2 133 67-219 147-286 (432)
453 cd01130 VirB11-like_ATPase Typ 98.8 7.7E-09 1.7E-13 87.1 6.7 46 67-112 15-60 (186)
454 PHA02562 46 endonuclease subun 98.8 2.8E-09 6.1E-14 104.5 4.5 78 154-237 465-554 (562)
455 PRK03918 chromosome segregatio 98.8 7.2E-09 1.6E-13 106.9 6.5 79 152-234 783-868 (880)
456 PRK07721 fliI flagellum-specif 98.8 1.2E-08 2.5E-13 96.4 7.3 150 65-233 147-328 (438)
457 smart00382 AAA ATPases associa 98.8 2.7E-08 5.8E-13 78.1 8.1 117 76-218 1-125 (148)
458 cd01131 PilT Pilus retraction 98.8 1.2E-08 2.7E-13 86.7 6.0 120 78-233 2-122 (198)
459 TIGR03238 dnd_assoc_3 dnd syst 98.8 2.4E-09 5.2E-14 100.5 1.6 49 65-115 20-69 (504)
460 PRK10246 exonuclease subunit S 98.7 2.3E-08 5E-13 104.4 6.6 82 152-236 944-1034(1047)
461 cd00820 PEPCK_HprK Phosphoenol 98.7 1.8E-09 3.9E-14 81.9 -1.3 46 66-117 4-49 (107)
462 TIGR02168 SMC_prok_B chromosom 98.7 3.7E-08 8.1E-13 104.3 7.4 80 151-235 1083-1167(1179)
463 cd00009 AAA The AAA+ (ATPases 98.7 3.4E-07 7.3E-12 72.5 11.2 36 67-102 7-44 (151)
464 PRK10416 signal recognition pa 98.6 2.4E-07 5.3E-12 84.2 10.9 127 75-218 112-245 (318)
465 PRK01156 chromosome segregatio 98.6 4.5E-08 9.7E-13 101.2 6.9 80 153-236 797-886 (895)
466 TIGR00606 rad50 rad50. This fa 98.6 3.4E-08 7.3E-13 105.6 5.9 70 156-228 1198-1279(1311)
467 PRK05399 DNA mismatch repair p 98.6 7.1E-08 1.5E-12 98.5 7.8 136 68-228 599-738 (854)
468 TIGR02655 circ_KaiC circadian 98.5 1.3E-08 2.8E-13 97.9 -0.1 148 73-233 17-190 (484)
469 PRK06995 flhF flagellar biosyn 98.5 5.1E-08 1.1E-12 92.7 3.7 59 73-131 252-312 (484)
470 TIGR03015 pepcterm_ATPase puta 98.5 1.8E-06 4E-11 76.5 11.4 62 36-103 7-69 (269)
471 TIGR01420 pilT_fam pilus retra 98.5 4E-07 8.8E-12 83.9 7.2 37 74-110 119-156 (343)
472 PRK14721 flhF flagellar biosyn 98.4 8.8E-07 1.9E-11 83.1 9.2 126 75-223 189-317 (420)
473 PRK14722 flhF flagellar biosyn 98.4 3.5E-07 7.5E-12 84.5 6.2 127 71-221 131-261 (374)
474 PF00488 MutS_V: MutS domain V 98.4 6.7E-07 1.4E-11 78.0 7.1 124 77-223 43-170 (235)
475 PRK14723 flhF flagellar biosyn 98.4 7.5E-07 1.6E-11 88.7 8.0 58 74-131 182-241 (767)
476 TIGR02169 SMC_prok_A chromosom 98.4 5.3E-07 1.1E-11 95.6 6.4 77 153-234 1070-1151(1164)
477 PRK09183 transposase/IS protei 98.4 9.5E-07 2.1E-11 78.2 6.9 120 68-226 94-214 (259)
478 PRK02224 chromosome segregatio 98.3 5E-07 1.1E-11 93.3 5.7 76 154-233 778-867 (880)
479 PRK12727 flagellar biosynthesi 98.3 1.9E-06 4.1E-11 82.4 8.6 51 73-123 346-398 (559)
480 COG1419 FlhF Flagellar GTP-bin 98.3 1.4E-06 2.9E-11 80.4 7.2 137 75-235 201-341 (407)
481 TIGR03881 KaiC_arch_4 KaiC dom 98.3 1.9E-06 4.1E-11 74.8 7.2 26 73-98 16-41 (229)
482 cd01125 repA Hexameric Replica 98.3 3E-06 6.5E-11 74.1 8.2 22 77-98 1-22 (239)
483 PRK12723 flagellar biosynthesi 98.3 5.3E-06 1.2E-10 77.3 10.2 129 77-228 174-308 (388)
484 PRK11889 flhF flagellar biosyn 98.3 5.2E-06 1.1E-10 76.8 9.9 50 77-126 241-290 (436)
485 PRK13830 conjugal transfer pro 98.3 6.2E-07 1.3E-11 91.5 4.2 60 171-233 648-718 (818)
486 PF00448 SRP54: SRP54-type pro 98.3 5.1E-06 1.1E-10 70.4 8.8 126 78-221 2-129 (196)
487 PF13401 AAA_22: AAA domain; P 98.3 6.3E-07 1.4E-11 70.4 3.0 29 75-103 2-30 (131)
488 TIGR00416 sms DNA repair prote 98.2 1.6E-06 3.6E-11 82.6 5.6 138 73-233 90-244 (454)
489 COG4637 Predicted ATPase [Gene 98.2 4.9E-06 1.1E-10 73.9 8.0 69 158-230 271-342 (373)
490 PRK13764 ATPase; Provisional 98.2 3.7E-06 8.1E-11 82.1 8.0 124 74-238 254-392 (602)
491 PF09818 ABC_ATPase: Predicted 98.2 2.4E-06 5.2E-11 79.3 6.1 143 73-233 241-412 (448)
492 cd02023 UMPK Uridine monophosp 98.2 3.5E-07 7.6E-12 77.6 0.6 34 79-114 1-34 (198)
493 PRK14974 cell division protein 98.2 1.4E-05 3.1E-10 73.1 10.8 53 77-129 140-192 (336)
494 PRK05703 flhF flagellar biosyn 98.2 1.2E-05 2.7E-10 76.0 10.4 128 75-226 219-351 (424)
495 PF13555 AAA_29: P-loop contai 98.2 8.3E-07 1.8E-11 60.3 1.7 32 73-104 18-50 (62)
496 PRK09270 nucleoside triphospha 98.2 1.2E-06 2.6E-11 76.2 2.9 46 65-110 21-66 (229)
497 TIGR01026 fliI_yscN ATPase Fli 98.2 2.1E-06 4.6E-11 81.2 4.7 50 66-116 153-202 (440)
498 PRK09862 putative ATP-dependen 98.1 2.3E-06 5.1E-11 82.1 5.0 54 64-117 197-250 (506)
499 PRK04296 thymidine kinase; Pro 98.1 1.2E-05 2.7E-10 67.8 8.7 55 173-233 76-140 (190)
500 PRK12726 flagellar biosynthesi 98.1 7.3E-06 1.6E-10 75.5 7.7 57 73-129 202-258 (407)
No 1
>KOG0925|consensus
Probab=100.00 E-value=1.2e-43 Score=321.53 Aligned_cols=254 Identities=63% Similarity=0.979 Sum_probs=229.2
Q ss_pred CCCCCCCCCChhhHHHHHhhcCCChhHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhh
Q psy2071 39 VNPFTGYPYTPRYHELHRKRITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRV 118 (302)
Q Consensus 39 ~~~~~~~~~~~~~~~l~~~r~~lp~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~ 118 (302)
.|||.+.|+++|||+++++|..||+|..++++...+..+++++++|++||||||++++++..+..... ..+.|+|++++
T Consensus 24 ~Npf~~~p~s~rY~~ilk~R~~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~~-~~v~CTQprrv 102 (699)
T KOG0925|consen 24 INPFNGKPYSQRYYDILKKRRELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSHL-TGVACTQPRRV 102 (699)
T ss_pred cCCCCCCcCcHHHHHHHHHHhcCchHHhHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHhhc-cceeecCchHH
Confidence 89999999999999999999999999999999999999999999999999999999999987654444 45789999999
Q ss_pred hHHHHHHHhhhhhccccccceeeeeeecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHHHHH
Q psy2071 119 AAMSVAQRVSEEMDCQLGQEVGYSIRFEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILMGVL 198 (302)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~~~l 198 (302)
++++++++|+++++.+.+++|||.++|+++...+|.++++++||++|.++...++..+.+||||||||++.++|.+++++
T Consensus 103 aamsva~RVadEMDv~lG~EVGysIrfEdC~~~~T~Lky~tDgmLlrEams~p~l~~y~viiLDeahERtlATDiLmGll 182 (699)
T KOG0925|consen 103 AAMSVAQRVADEMDVTLGEEVGYSIRFEDCTSPNTLLKYCTDGMLLREAMSDPLLGRYGVIILDEAHERTLATDILMGLL 182 (699)
T ss_pred HHHHHHHHHHHHhccccchhccccccccccCChhHHHHHhcchHHHHHHhhCcccccccEEEechhhhhhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcCCccceeecCCCCCCC-----------------CCCCcccc
Q psy2071 199 KEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRTHPVEIFYTPEPPLGA-----------------GPWLPQCF 261 (302)
Q Consensus 199 ~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~~~~~~~~~~~~~~~~-----------------~~~l~~~~ 261 (302)
++++..+.+.+++||++|||.+.+..|++++++|+++| .+|||+||.++++.++ |+.+ .|.
T Consensus 183 k~v~~~rpdLk~vvmSatl~a~Kfq~yf~n~Pll~vpg-~~PvEi~Yt~e~erDylEaairtV~qih~~ee~GDil-vFL 260 (699)
T KOG0925|consen 183 KEVVRNRPDLKLVVMSATLDAEKFQRYFGNAPLLAVPG-THPVEIFYTPEPERDYLEAAIRTVLQIHMCEEPGDIL-VFL 260 (699)
T ss_pred HHHHhhCCCceEEEeecccchHHHHHHhCCCCeeecCC-CCceEEEecCCCChhHHHHHHHHHHHHHhccCCCCEE-EEe
Confidence 99999999999999999999999999999999999999 8999999999987643 3433 577
Q ss_pred cCchhHHHHhhHHHhHhhc--cCCCcchhhHHHHHH
Q psy2071 262 TRPNEAKKAADDAKMRFAH--IDGDHLTLLNVYHAF 295 (302)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~--~~gD~ltll~l~~a~ 295 (302)
.+.++++.++..+...... .++..+.+.++|-+-
T Consensus 261 tgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLyP~~ 296 (699)
T KOG0925|consen 261 TGEEEIEDACRKISREVDNLGPQVGPLKVVPLYPAQ 296 (699)
T ss_pred cCHHHHHHHHHHHHHHHHhhccccCCceEEecCchh
Confidence 7788888777666544433 334567777777433
No 2
>KOG0922|consensus
Probab=100.00 E-value=1.6e-41 Score=319.07 Aligned_cols=243 Identities=52% Similarity=0.873 Sum_probs=217.3
Q ss_pred hHHHHHhhcCCChhHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhh
Q psy2071 51 YHELHRKRITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEE 130 (302)
Q Consensus 51 ~~~l~~~r~~lp~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~ 130 (302)
...+...|..||++++++.|...++.+++++|+|++||||||++++.+..-.++.... |.++||||+++++++.+|+++
T Consensus 40 ~~~i~~qR~~LPI~~~r~~il~~ve~nqvlIviGeTGsGKSTQipQyL~eaG~~~~g~-I~~TQPRRVAavslA~RVAeE 118 (674)
T KOG0922|consen 40 NLSIQEQRESLPIYKYRDQILYAVEDNQVLIVIGETGSGKSTQIPQYLAEAGFASSGK-IACTQPRRVAAVSLAKRVAEE 118 (674)
T ss_pred ccCHHHhhccCCHHHHHHHHHHHHHHCCEEEEEcCCCCCccccHhHHHHhcccccCCc-EEeecCchHHHHHHHHHHHHH
Confidence 3456788899999999999999999999999999999999999999987655554323 899999999999999999999
Q ss_pred hccccccceeeeeeecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHHHHHHHHHHHcCCCcE
Q psy2071 131 MDCQLGQEVGYSIRFEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILMGVLKEVIKQRADLKL 210 (302)
Q Consensus 131 ~~~~~~~~v~~~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~~~l~~ll~~~~~~~~ 210 (302)
++..+++.|||.+||++....+|++++|++|+++|.++.++++.++++||||||||++..+|.++++|+++++.+.++++
T Consensus 119 ~~~~lG~~VGY~IRFed~ts~~TrikymTDG~LLRE~l~Dp~LskYsvIIlDEAHERsl~TDiLlGlLKki~~~R~~Lkl 198 (674)
T KOG0922|consen 119 MGCQLGEEVGYTIRFEDSTSKDTRIKYMTDGMLLREILKDPLLSKYSVIILDEAHERSLHTDILLGLLKKILKKRPDLKL 198 (674)
T ss_pred hCCCcCceeeeEEEecccCCCceeEEEecchHHHHHHhcCCccccccEEEEechhhhhhHHHHHHHHHHHHHhcCCCceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEecCHHHHHhhccCCCeeeecCcCCccceeecCCCCCCC-----------------CCCCcccccCchhHHHHhhH
Q psy2071 211 VIMSATLDAGKFQQYFDNAPLMNVPGRTHPVEIFYTPEPPLGA-----------------GPWLPQCFTRPNEAKKAADD 273 (302)
Q Consensus 211 ~ii~~thd~~~~~~~~d~~~~l~i~g~~~~~~~~~~~~~~~~~-----------------~~~l~~~~~~~~~~~~~~~~ 273 (302)
+|+++|.|.+.+.+||..+.++.|+||.|||+++|.+.|..+| ++.+ +|.+++++++..+..
T Consensus 199 IimSATlda~kfS~yF~~a~i~~i~GR~fPVei~y~~~p~~dYv~a~~~tv~~Ih~~E~~GDIL-vFLtGqeEIe~~~~~ 277 (674)
T KOG0922|consen 199 IIMSATLDAEKFSEYFNNAPILTIPGRTFPVEILYLKEPTADYVDAALITVIQIHLTEPPGDIL-VFLTGQEEIEAACEL 277 (674)
T ss_pred EEEeeeecHHHHHHHhcCCceEeecCCCCceeEEeccCCchhhHHHHHHHHHHHHccCCCCCEE-EEeCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999876643 4433 688889999988888
Q ss_pred HHhHhhccCCC-cchhhHHHHHH
Q psy2071 274 AKMRFAHIDGD-HLTLLNVYHAF 295 (302)
Q Consensus 274 ~~~~~~~~~gD-~ltll~l~~a~ 295 (302)
+.....+...+ ..-++++|.++
T Consensus 278 l~e~~~~~~~~~~~~~lply~aL 300 (674)
T KOG0922|consen 278 LRERAKSLPEDCPELILPLYGAL 300 (674)
T ss_pred HHHHhhhccccCcceeeeecccC
Confidence 87766555443 23556677664
No 3
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2.4e-42 Score=286.66 Aligned_cols=187 Identities=19% Similarity=0.191 Sum_probs=149.6
Q ss_pred hcCCChhHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhh-hH-------HHHHHHhhh
Q psy2071 58 RITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRV-AA-------MSVAQRVSE 129 (302)
Q Consensus 58 r~~lp~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~-~~-------~~~~~~~~~ 129 (302)
.+.+....++++|++.|++||+++|+||+||||||||+||.++..|++|.|.++|...... .. ..+.|....
T Consensus 9 ~K~fg~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnL 88 (240)
T COG1126 9 SKSFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNL 88 (240)
T ss_pred eEEeCCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcCeecccccc
Confidence 3456667789999999999999999999999999999999999999999999999654211 11 123344444
Q ss_pred hhccccccceeeeeee--------------------cCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCc
Q psy2071 130 EMDCQLGQEVGYSIRF--------------------EDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTL 189 (302)
Q Consensus 130 ~~~~~~~~~v~~~~~~--------------------~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~ 189 (302)
++..++.+|+.+.... ......+.....|||||+||++|||||+.+|+++++|| ||+
T Consensus 89 FPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDE---PTS 165 (240)
T COG1126 89 FPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDE---PTS 165 (240)
T ss_pred cccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecC---Ccc
Confidence 5567777777665421 11112344567799999999999999999999999999 999
Q ss_pred chHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecC----cCCccceeecCC
Q psy2071 190 ATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPG----RTHPVEIFYTPE 248 (302)
Q Consensus 190 ~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g----~~~~~~~~~~~~ 248 (302)
+|||.+ ..+.+++..+.+.|.|++++||++.++.+.+||+++|+ .| .+.|.++|..|.
T Consensus 166 ALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd-~G~iie~g~p~~~f~~p~ 228 (240)
T COG1126 166 ALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMD-QGKIIEEGPPEEFFDNPK 228 (240)
T ss_pred cCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEee-CCEEEEecCHHHHhcCCC
Confidence 999988 88888888888889999999999999999999999999 55 346666665553
No 4
>KOG0923|consensus
Probab=100.00 E-value=9.3e-39 Score=298.41 Aligned_cols=244 Identities=52% Similarity=0.844 Sum_probs=219.6
Q ss_pred hHHHHHhhcCCChhHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhh
Q psy2071 51 YHELHRKRITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEE 130 (302)
Q Consensus 51 ~~~l~~~r~~lp~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~ 130 (302)
-..+...|+.||++.+++++..+|+.++++.|+|++||||||++|+.+-.-..+.|...|.|+||+|+++++++.+|+++
T Consensus 254 ~~~iee~RksLPVy~ykdell~av~e~QVLiI~GeTGSGKTTQiPQyL~EaGytk~gk~IgcTQPRRVAAmSVAaRVA~E 333 (902)
T KOG0923|consen 254 RESIEEVRKSLPVYPYKDELLKAVKEHQVLIIVGETGSGKTTQIPQYLYEAGYTKGGKKIGCTQPRRVAAMSVAARVAEE 333 (902)
T ss_pred HHHHHHHHhcCCchhhHHHHHHHHHhCcEEEEEcCCCCCccccccHHHHhcccccCCceEeecCcchHHHHHHHHHHHHH
Confidence 34567779999999999999999999999999999999999999999877777888778999999999999999999999
Q ss_pred hccccccceeeeeeecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHHHHHHHHHHHcCCCcE
Q psy2071 131 MDCQLGQEVGYSIRFEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILMGVLKEVIKQRADLKL 210 (302)
Q Consensus 131 ~~~~~~~~v~~~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~~~l~~ll~~~~~~~~ 210 (302)
++...+.+|||.++|+++.+..|.+++|++||+.|..+....+..+++||+|||||+|.++|.+..+++++.+.+.+++.
T Consensus 334 MgvkLG~eVGYsIRFEdcTSekTvlKYMTDGmLlREfL~epdLasYSViiiDEAHERTL~TDILfgLvKDIar~RpdLKl 413 (902)
T KOG0923|consen 334 MGVKLGHEVGYSIRFEDCTSEKTVLKYMTDGMLLREFLSEPDLASYSVIIVDEAHERTLHTDILFGLVKDIARFRPDLKL 413 (902)
T ss_pred hCcccccccceEEEeccccCcceeeeeecchhHHHHHhccccccceeEEEeehhhhhhhhhhHHHHHHHHHHhhCCcceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEecCHHHHHhhccCCCeeeecCcCCccceeecCCCCCCC-----------------CCCCcccccCchhHHHHhhH
Q psy2071 211 VIMSATLDAGKFQQYFDNAPLMNVPGRTHPVEIFYTPEPPLGA-----------------GPWLPQCFTRPNEAKKAADD 273 (302)
Q Consensus 211 ~ii~~thd~~~~~~~~d~~~~l~i~g~~~~~~~~~~~~~~~~~-----------------~~~l~~~~~~~~~~~~~~~~ 273 (302)
.|.++|.|.+.+..|||.++++.+|||-|||++||.+.|+.+| ++.+ +|+.+++++......
T Consensus 414 lIsSAT~DAekFS~fFDdapIF~iPGRRyPVdi~Yt~~PEAdYldAai~tVlqIH~tqp~GDIL-VFltGQeEIEt~~e~ 492 (902)
T KOG0923|consen 414 LISSATMDAEKFSAFFDDAPIFRIPGRRYPVDIFYTKAPEADYLDAAIVTVLQIHLTQPLGDIL-VFLTGQEEIETVKEN 492 (902)
T ss_pred EeeccccCHHHHHHhccCCcEEeccCcccceeeecccCCchhHHHHHHhhheeeEeccCCccEE-EEeccHHHHHHHHHH
Confidence 9999999999999999999999999999999999999887643 3333 577888887766655
Q ss_pred HHhHh--hccCCCcchhhHHHHHH
Q psy2071 274 AKMRF--AHIDGDHLTLLNVYHAF 295 (302)
Q Consensus 274 ~~~~~--~~~~gD~ltll~l~~a~ 295 (302)
+..+. ....+.-+.++++|+.+
T Consensus 493 l~~~~~~LGski~eliv~PiYaNL 516 (902)
T KOG0923|consen 493 LKERCRRLGSKIRELIVLPIYANL 516 (902)
T ss_pred HHHHHHHhccccceEEEeeccccC
Confidence 54433 33345678889998765
No 5
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.2e-39 Score=276.10 Aligned_cols=172 Identities=15% Similarity=0.118 Sum_probs=142.2
Q ss_pred cCCChhHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhh--hHHHHHHHhhhhhccccc
Q psy2071 59 ITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRV--AAMSVAQRVSEEMDCQLG 136 (302)
Q Consensus 59 ~~lp~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~--~~~~~~~~~~~~~~~~~~ 136 (302)
+.++...++++|++.|.+||+++|+|||||||||||++++|+..|++|++.+.|...... ....+.|.....++.++.
T Consensus 11 ~~f~~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ~~~LlPW~Tv~ 90 (248)
T COG1116 11 KSFGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQEDALLPWLTVL 90 (248)
T ss_pred EEeCceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEeccCcccchhhHH
Confidence 344556779999999999999999999999999999999999999999999998764221 223344555567788999
Q ss_pred cceeeeeeecCCC-------------------CccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-H
Q psy2071 137 QEVGYSIRFEDCS-------------------SPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-G 196 (302)
Q Consensus 137 ~~v~~~~~~~~~~-------------------~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~ 196 (302)
+||.+.+...... ..+.....||||||||++|||||+.+|++|+||| |+.++|... .
T Consensus 91 ~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDE---PFgALDalTR~ 167 (248)
T COG1116 91 DNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDE---PFGALDALTRE 167 (248)
T ss_pred hhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEEcC---CcchhhHHHHH
Confidence 9999887654311 2345567799999999999999999999999999 999999888 4
Q ss_pred HHHHHHH-HcCCCcEEEEEEecCHHHHHhhccCCCeee
Q psy2071 197 VLKEVIK-QRADLKLVIMSATLDAGKFQQYFDNAPLMN 233 (302)
Q Consensus 197 ~l~~ll~-~~~~~~~~ii~~thd~~~~~~~~d~~~~l~ 233 (302)
.+.+.+. .+.+.+.|++++|||++++..++|||++|.
T Consensus 168 ~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~ 205 (248)
T COG1116 168 ELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLS 205 (248)
T ss_pred HHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEec
Confidence 5555444 456678999999999999999999999998
No 6
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=2.2e-39 Score=274.49 Aligned_cols=191 Identities=19% Similarity=0.235 Sum_probs=156.2
Q ss_pred ChhHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhh-------hHHHHHHHhhhhhccc
Q psy2071 62 PVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRV-------AAMSVAQRVSEEMDCQ 134 (302)
Q Consensus 62 p~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~-------~~~~~~~~~~~~~~~~ 134 (302)
-...+.+++++.|++|++++++|||||||||+|++|.+++.|++|+|.++|.+.... ...++.|.+..++..+
T Consensus 12 ~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGYviQqigLFPh~T 91 (309)
T COG1125 12 GNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGYVIQQIGLFPHLT 91 (309)
T ss_pred CCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhhhhhhcccCCCcc
Confidence 345578999999999999999999999999999999999999999999999875433 3345566677788899
Q ss_pred cccceeeeeeecCCC---------------------CccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHH
Q psy2071 135 LGQEVGYSIRFEDCS---------------------SPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDI 193 (302)
Q Consensus 135 ~~~~v~~~~~~~~~~---------------------~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~ 193 (302)
+.+|++....+..+. ..++....|||||+||+.+||||+.+|++|+||| |+.++|+
T Consensus 92 v~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~ilLMDE---PFgALDp 168 (309)
T COG1125 92 VAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMDE---PFGALDP 168 (309)
T ss_pred HHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeEeecC---CccccCh
Confidence 999998877554332 2345567799999999999999999999999999 9999999
Q ss_pred HH-HHHHHHHH-HcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC----CccceeecCCCCCCCCCCCcccc
Q psy2071 194 LM-GVLKEVIK-QRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT----HPVEIFYTPEPPLGAGPWLPQCF 261 (302)
Q Consensus 194 ~~-~~l~~ll~-~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~----~~~~~~~~~~~~~~~~~~l~~~~ 261 (302)
+. ..+.+.+. ..++.++||+++|||++++..++|++++|+ .|+. .|.++...|. .+|+..++
T Consensus 169 I~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~-~G~i~Q~~~P~~il~~Pa-----n~FV~~f~ 236 (309)
T COG1125 169 ITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMD-AGEIVQYDTPDEILANPA-----NDFVEDFF 236 (309)
T ss_pred hhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEec-CCeEEEeCCHHHHHhCcc-----HHHHHHHh
Confidence 98 55665555 345679999999999999999999999999 6654 5666655553 45665554
No 7
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=2e-39 Score=292.65 Aligned_cols=189 Identities=18% Similarity=0.208 Sum_probs=156.6
Q ss_pred hhcCCChhHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCc-----hhhhHHHHHHHhhhhh
Q psy2071 57 KRITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQP-----RRVAAMSVAQRVSEEM 131 (302)
Q Consensus 57 ~r~~lp~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~-----~~~~~~~~~~~~~~~~ 131 (302)
..+.+....+++++++.|++||+++|+|||||||||+|++|+|+..|++|+|.++|.+. .+.....+.|..+.++
T Consensus 11 v~k~yg~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig~VFQ~YALFP 90 (352)
T COG3842 11 VSKSFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIGMVFQSYALFP 90 (352)
T ss_pred eeeecCCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhcccceeecCcccCC
Confidence 34456666678999999999999999999999999999999999999999999998764 3344456677778889
Q ss_pred ccccccceeeeeeecCCC--------------------CccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcch
Q psy2071 132 DCQLGQEVGYSIRFEDCS--------------------SPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLAT 191 (302)
Q Consensus 132 ~~~~~~~v~~~~~~~~~~--------------------~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~l 191 (302)
.+++.+||+|.++..... ..++.+..|||||+|||+|||||+.+|++|+||| |.+++
T Consensus 91 HltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~vLLLDE---PlSaL 167 (352)
T COG3842 91 HMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDE---PLSAL 167 (352)
T ss_pred CCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCcchhhhcC---cccch
Confidence 999999999999833211 1234556699999999999999999999999999 99999
Q ss_pred HHHH-HHH-HHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeee---ecCcCCccceeecCC
Q psy2071 192 DILM-GVL-KEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMN---VPGRTHPVEIFYTPE 248 (302)
Q Consensus 192 D~~~-~~l-~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~---i~g~~~~~~~~~~~~ 248 (302)
|..+ ..+ .++.+..++.|+|.|++|||-+++..++|||++|+ |...++|.++|..|.
T Consensus 168 D~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~P~ 229 (352)
T COG3842 168 DAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYERPA 229 (352)
T ss_pred hHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhCcc
Confidence 9776 444 44444456679999999999999999999999999 333458888887775
No 8
>KOG0924|consensus
Probab=100.00 E-value=1.9e-36 Score=283.55 Aligned_cols=240 Identities=48% Similarity=0.786 Sum_probs=211.5
Q ss_pred HHHhhcCCChhHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhhcc
Q psy2071 54 LHRKRITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDC 133 (302)
Q Consensus 54 l~~~r~~lp~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~ 133 (302)
+...|+.||++.+++++...|.++++++|+|++||||||+|.+.+.+..... ...|.|+||+++++++++.+++.+++.
T Consensus 348 i~eqrq~LPvf~~R~~ll~~ir~n~vvvivgETGSGKTTQl~QyL~edGY~~-~GmIGcTQPRRvAAiSVAkrVa~EM~~ 426 (1042)
T KOG0924|consen 348 IREQRQYLPVFACRDQLLSVIRENQVVVIVGETGSGKTTQLAQYLYEDGYAD-NGMIGCTQPRRVAAISVAKRVAEEMGV 426 (1042)
T ss_pred HHHHHhhcchHHHHHHHHHHHhhCcEEEEEecCCCCchhhhHHHHHhccccc-CCeeeecCchHHHHHHHHHHHHHHhCC
Confidence 5677889999999999999999999999999999999999999765543222 336889999999999999999999999
Q ss_pred ccccceeeeeeecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHHHHHHHHHHHcCCCcEEEE
Q psy2071 134 QLGQEVGYSIRFEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILMGVLKEVIKQRADLKLVIM 213 (302)
Q Consensus 134 ~~~~~v~~~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~~~l~~ll~~~~~~~~~ii 213 (302)
++++.|||.++|++....+|.+++|+.|.+.|..|...++.++++||||||||++.++|.+++++++++.++.+++++|.
T Consensus 427 ~lG~~VGYsIRFEdvT~~~T~IkymTDGiLLrEsL~d~~L~kYSviImDEAHERslNtDilfGllk~~larRrdlKliVt 506 (1042)
T KOG0924|consen 427 TLGDTVGYSIRFEDVTSEDTKIKYMTDGILLRESLKDRDLDKYSVIIMDEAHERSLNTDILFGLLKKVLARRRDLKLIVT 506 (1042)
T ss_pred ccccccceEEEeeecCCCceeEEEeccchHHHHHhhhhhhhheeEEEechhhhcccchHHHHHHHHHHHHhhccceEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCHHHHHhhccCCCeeeecCcCCccceeecCCCCCCC-----------------CCCCcccccCchhHHHHhhHHHh
Q psy2071 214 SATLDAGKFQQYFDNAPLMNVPGRTHPVEIFYTPEPPLGA-----------------GPWLPQCFTRPNEAKKAADDAKM 276 (302)
Q Consensus 214 ~~thd~~~~~~~~d~~~~l~i~g~~~~~~~~~~~~~~~~~-----------------~~~l~~~~~~~~~~~~~~~~~~~ 276 (302)
++|.|.+.+..||..++.++|+||.|||+++|...|.++| ++.+ .|.++++.++..+..+..
T Consensus 507 SATm~a~kf~nfFgn~p~f~IpGRTyPV~~~~~k~p~eDYVeaavkq~v~Ihl~~~~Gdil-IfmtGqediE~t~~~i~~ 585 (1042)
T KOG0924|consen 507 SATMDAQKFSNFFGNCPQFTIPGRTYPVEIMYTKTPVEDYVEAAVKQAVQIHLSGPPGDIL-IFMTGQEDIECTCDIIKE 585 (1042)
T ss_pred eccccHHHHHHHhCCCceeeecCCccceEEEeccCchHHHHHHHHhhheEeeccCCCCCEE-EecCCCcchhHHHHHHHH
Confidence 9999999999999999999999999999999998886543 2322 455677777766655555
Q ss_pred Hhh---ccCCCcchhhHHHHHH
Q psy2071 277 RFA---HIDGDHLTLLNVYHAF 295 (302)
Q Consensus 277 ~~~---~~~gD~ltll~l~~a~ 295 (302)
.+. ..++..+.+|++|.++
T Consensus 586 ~l~ql~~~~~~~L~vlpiYSQL 607 (1042)
T KOG0924|consen 586 KLEQLDSAPTTDLAVLPIYSQL 607 (1042)
T ss_pred HHHhhhcCCCCceEEEeehhhC
Confidence 443 3334578999999876
No 9
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.6e-38 Score=274.09 Aligned_cols=165 Identities=16% Similarity=0.191 Sum_probs=135.1
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCc------hhhhHHHHHHHhhhhhccccccce
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQP------RRVAAMSVAQRVSEEMDCQLGQEV 139 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~------~~~~~~~~~~~~~~~~~~~~~~~v 139 (302)
++++|++.|++|++++|+||||||||||++.++|+++|.+|++.+.|... .+++++.+...+...+..++.+.|
T Consensus 19 vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V 98 (254)
T COG1121 19 VLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVV 98 (254)
T ss_pred eeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHH
Confidence 68999999999999999999999999999999999999999999988743 234444443333333445555544
Q ss_pred eeee--e---------------------ecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-
Q psy2071 140 GYSI--R---------------------FEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM- 195 (302)
Q Consensus 140 ~~~~--~---------------------~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~- 195 (302)
.... + .......++.+..|||||+||+.|||||+.+|++|+||| |+.++|+..
T Consensus 99 ~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDE---P~~gvD~~~~ 175 (254)
T COG1121 99 LLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDE---PFTGVDVAGQ 175 (254)
T ss_pred HccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecC---CcccCCHHHH
Confidence 3321 0 011123466788899999999999999999999999999 999999988
Q ss_pred HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeee
Q psy2071 196 GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMN 233 (302)
Q Consensus 196 ~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~ 233 (302)
..+.++++++++.|+||+++|||++.+.++||++++|+
T Consensus 176 ~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln 213 (254)
T COG1121 176 KEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLN 213 (254)
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEEc
Confidence 78999999887779999999999999999999999998
No 10
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.2e-38 Score=286.29 Aligned_cols=189 Identities=18% Similarity=0.242 Sum_probs=156.5
Q ss_pred hhcCCChhHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCc-----hhhhHHHHHHHhhhhh
Q psy2071 57 KRITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQP-----RRVAAMSVAQRVSEEM 131 (302)
Q Consensus 57 ~r~~lp~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~-----~~~~~~~~~~~~~~~~ 131 (302)
..+.+....+++++++.|++||+++|+|||||||||+|++|+|+..|++|+|.|.|... .......+.|..+.++
T Consensus 9 v~K~yg~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyP 88 (338)
T COG3839 9 VRKSFGSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAMVFQNYALYP 88 (338)
T ss_pred eEEEcCCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEEEeCCccccC
Confidence 33445443368999999999999999999999999999999999999999999998753 3344455667778889
Q ss_pred ccccccceeeeeeecCCC-------------------CccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchH
Q psy2071 132 DCQLGQEVGYSIRFEDCS-------------------SPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATD 192 (302)
Q Consensus 132 ~~~~~~~v~~~~~~~~~~-------------------~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD 192 (302)
.+++.+|++|.++..... ..++.+..|||||+|||++||||+.+|++++||| |.+++|
T Consensus 89 hmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~DE---PlSnLD 165 (338)
T COG3839 89 HMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDE---PLSNLD 165 (338)
T ss_pred CCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCEEEecC---chhHhh
Confidence 999999999999765322 2345677899999999999999999999999999 999999
Q ss_pred HHH-HHHHHHHHH-cCCCcEEEEEEecCHHHHHhhccCCCeeeecCc----CCccceeecCCC
Q psy2071 193 ILM-GVLKEVIKQ-RADLKLVIMSATLDAGKFQQYFDNAPLMNVPGR----THPVEIFYTPEP 249 (302)
Q Consensus 193 ~~~-~~l~~ll~~-~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~----~~~~~~~~~~~~ 249 (302)
..+ ..++..+++ .++.+.|+|.+|||..++..++|++++|+ .|+ +.|.++|..|..
T Consensus 166 a~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~-~G~i~Q~g~p~ely~~P~n 227 (338)
T COG3839 166 AKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMN-DGRIQQVGTPLELYERPAN 227 (338)
T ss_pred HHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEe-CCeeeecCChHHHhhCccc
Confidence 777 445555543 45678999999999999999999999999 554 478888877653
No 11
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=9.6e-38 Score=271.14 Aligned_cols=191 Identities=16% Similarity=0.192 Sum_probs=155.1
Q ss_pred HhhcCCChhHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeec---Cchh-----hhHHHHHHHh
Q psy2071 56 RKRITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACT---QPRR-----VAAMSVAQRV 127 (302)
Q Consensus 56 ~~r~~lp~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~---~~~~-----~~~~~~~~~~ 127 (302)
...+.++.+.+.++|++.|+.||.++|+|||||||||||++|+|++.|+.|.|.++|. +... .....+.|..
T Consensus 7 ~~~~~~~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~Y 86 (345)
T COG1118 7 NVKKRFGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHY 86 (345)
T ss_pred hhhhhcccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcceeEEEech
Confidence 3345577777788999999999999999999999999999999999999999999987 3322 2223445566
Q ss_pred hhhhccccccceeeeeeecCCC---------------------CccccccccCHHHHHHHhccccCCCCCcEEEEcCCCC
Q psy2071 128 SEEMDCQLGQEVGYSIRFEDCS---------------------SPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHE 186 (302)
Q Consensus 128 ~~~~~~~~~~~v~~~~~~~~~~---------------------~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~ 186 (302)
+.++.+++.+||+|.++..... ..++.+..|||||+||+++||||+.+|++|+|||
T Consensus 87 ALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~eP~vLLLDE--- 163 (345)
T COG1118 87 ALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLDE--- 163 (345)
T ss_pred hhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcCCCeEeecC---
Confidence 6778899999999998654221 1233455699999999999999999999999999
Q ss_pred CCcchHHHH-HHHHHHHHHcC-CCcEEEEEEecCHHHHHhhccCCCeeeecCc----CCccceeecCCCC
Q psy2071 187 RTLATDILM-GVLKEVIKQRA-DLKLVIMSATLDAGKFQQYFDNAPLMNVPGR----THPVEIFYTPEPP 250 (302)
Q Consensus 187 p~~~lD~~~-~~l~~ll~~~~-~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~----~~~~~~~~~~~~~ 250 (302)
|+.++|... ..++..+.+.. +.|.|.+++|||.+++.++||++.+|+ .|+ +.|.++|..|...
T Consensus 164 Pf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~-~G~Ieqvg~p~ev~~~P~s~ 232 (345)
T COG1118 164 PFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLN-QGRIEQVGPPDEVYDHPASR 232 (345)
T ss_pred CchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEec-CCeeeeeCCHHHHhcCCCcc
Confidence 999999877 66777666543 459999999999999999999999999 664 4777777766543
No 12
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=3.8e-38 Score=265.39 Aligned_cols=196 Identities=17% Similarity=0.256 Sum_probs=154.3
Q ss_pred cCCChhHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHH---HHHHHh-------h
Q psy2071 59 ITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAM---SVAQRV-------S 128 (302)
Q Consensus 59 ~~lp~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~---~~~~~~-------~ 128 (302)
+.+....+.+++++.|++||+++|+||+|||||||+++|.|+++|++|+|.+.|.+....+.. .+..++ +
T Consensus 16 ~~fG~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~gA 95 (263)
T COG1127 16 KSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGA 95 (263)
T ss_pred eecCCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHhheeEEeeccc
Confidence 344555678999999999999999999999999999999999999999999999886544322 222222 3
Q ss_pred hhhccccccceeeeeeecCCCC---------------------ccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCC
Q psy2071 129 EEMDCQLGQEVGYSIRFEDCSS---------------------PKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHER 187 (302)
Q Consensus 129 ~~~~~~~~~~v~~~~~~~~~~~---------------------~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p 187 (302)
.+-..++.+||+|.++-+.... .+....+|||||++|++||||++.+|++|++|| |
T Consensus 96 LFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAialdPell~~DE---P 172 (263)
T COG1127 96 LFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDE---P 172 (263)
T ss_pred cccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhcCCCEEEecC---C
Confidence 3446789999999886543321 234456799999999999999999999999999 9
Q ss_pred CcchHHHH-HHHHHHHHHcC-CCcEEEEEEecCHHHHHhhccCCCeee---ecCcCCccceeecCCCCCCCCCCCccccc
Q psy2071 188 TLATDILM-GVLKEVIKQRA-DLKLVIMSATLDAGKFQQYFDNAPLMN---VPGRTHPVEIFYTPEPPLGAGPWLPQCFT 262 (302)
Q Consensus 188 ~~~lD~~~-~~l~~ll~~~~-~~~~~ii~~thd~~~~~~~~d~~~~l~---i~g~~~~~~~~~~~~~~~~~~~~l~~~~~ 262 (302)
|+|+||.. ..+.+++..++ ..+.|++++|||++.+..+||+++++. +.-.+.|.++...++ +++.+|+.
T Consensus 173 tsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~el~~sd~------P~v~qf~~ 246 (263)
T COG1127 173 TSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEELLASDD------PWVRQFFN 246 (263)
T ss_pred CCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCHHHHHhCCC------HHHHHHhc
Confidence 99999988 88888887654 579999999999999999999999998 333345655555443 55655554
Q ss_pred C
Q psy2071 263 R 263 (302)
Q Consensus 263 ~ 263 (302)
+
T Consensus 247 G 247 (263)
T COG1127 247 G 247 (263)
T ss_pred C
Confidence 3
No 13
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.3e-38 Score=272.43 Aligned_cols=181 Identities=17% Similarity=0.243 Sum_probs=146.0
Q ss_pred hHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhh---HHHHHHHh---hh----hhcc
Q psy2071 64 FEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVA---AMSVAQRV---SE----EMDC 133 (302)
Q Consensus 64 ~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~---~~~~~~~~---~~----~~~~ 133 (302)
..+++++++.|++|+++||+|.+|+|||||++++.++..|++|++.++|.+..... .....+++ ++ ....
T Consensus 19 ~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLLssr 98 (339)
T COG1135 19 VTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSR 98 (339)
T ss_pred eeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHHHhhccEEeccccccccc
Confidence 44689999999999999999999999999999999999999999999996543222 22222222 22 2346
Q ss_pred ccccceeeeeeecCCC-------------------CccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHH
Q psy2071 134 QLGQEVGYSIRFEDCS-------------------SPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDIL 194 (302)
Q Consensus 134 ~~~~~v~~~~~~~~~~-------------------~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~ 194 (302)
++.+||+|++...... ..+....+|||||||||+|||||+.+|++|+.|| +|++|||.
T Consensus 99 TV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~P~iLL~DE---aTSALDP~ 175 (339)
T COG1135 99 TVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDE---ATSALDPE 175 (339)
T ss_pred hHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcCCCEEEecC---ccccCChH
Confidence 8999999998665532 2234556799999999999999999999999999 99999998
Q ss_pred H-HHHHHHHHHc-CCCcEEEEEEecCHHHHHhhccCCCeeeecCc----CCccceeecCC
Q psy2071 195 M-GVLKEVIKQR-ADLKLVIMSATLDAGKFQQYFDNAPLMNVPGR----THPVEIFYTPE 248 (302)
Q Consensus 195 ~-~~l~~ll~~~-~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~----~~~~~~~~~~~ 248 (302)
. ..+.+++++. ++.|.||+++||.|+.+.++||++++|+ .|+ +.-.++|..|.
T Consensus 176 TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~-~G~lvE~G~v~~vF~~Pk 234 (339)
T COG1135 176 TTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLD-QGRLVEEGTVSEVFANPK 234 (339)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEee-CCEEEEeccHHHhhcCcc
Confidence 8 6677777754 4679999999999999999999999999 554 45556666664
No 14
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=3.4e-37 Score=267.18 Aligned_cols=173 Identities=14% Similarity=0.136 Sum_probs=139.7
Q ss_pred ChhHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhh-------ccc
Q psy2071 62 PVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEM-------DCQ 134 (302)
Q Consensus 62 p~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~-------~~~ 134 (302)
+...++++++++|++|++++|+|||||||||||++|+|+++|.+|.|.++|.+.........++.++..+ ..+
T Consensus 13 ~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~t 92 (258)
T COG1120 13 GGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLT 92 (258)
T ss_pred CCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcE
Confidence 3344688999999999999999999999999999999999999999999999988877777776654322 334
Q ss_pred cccceeeee----eecCC-------------------CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcch
Q psy2071 135 LGQEVGYSI----RFEDC-------------------SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLAT 191 (302)
Q Consensus 135 ~~~~v~~~~----~~~~~-------------------~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~l 191 (302)
+.+.|.+.- .+... ...++.+..||||||||+.||+||+.+|++|+||| ||+.|
T Consensus 93 V~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iLLLDE---PTs~L 169 (258)
T COG1120 93 VYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDE---PTSHL 169 (258)
T ss_pred EeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEEEeCC---Ccccc
Confidence 444443321 01110 12344567799999999999999999999999999 99999
Q ss_pred HHHH-HHHHHHHHHcC-CCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 192 DILM-GVLKEVIKQRA-DLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 192 D~~~-~~l~~ll~~~~-~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
|... ..+.+++++.. +.|.|+++++||++.+.+|||++++|+ .|+.
T Consensus 170 Di~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk-~G~i 217 (258)
T COG1120 170 DIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLK-DGKI 217 (258)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEE-CCeE
Confidence 9887 55777777665 568999999999999999999999999 6653
No 15
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.8e-37 Score=251.48 Aligned_cols=170 Identities=16% Similarity=0.178 Sum_probs=138.3
Q ss_pred hhHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHH-------HHhhhhhcccc
Q psy2071 63 VFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVA-------QRVSEEMDCQL 135 (302)
Q Consensus 63 ~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~-------~~~~~~~~~~~ 135 (302)
..++.+|++|.++.|++++|+|||||||||+|++|++++.|++|.+.++|.+..+-+. .+. .....+-.++.
T Consensus 14 ~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~-~vrr~IGVl~~e~glY~RlT~ 92 (245)
T COG4555 14 KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPS-FVRRKIGVLFGERGLYARLTA 92 (245)
T ss_pred HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChH-HHhhhcceecCCcChhhhhhH
Confidence 4558999999999999999999999999999999999999999999999876432211 111 11122233455
Q ss_pred ccceeeeeeecCCC-------------------CccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-
Q psy2071 136 GQEVGYSIRFEDCS-------------------SPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM- 195 (302)
Q Consensus 136 ~~~v~~~~~~~~~~-------------------~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~- 195 (302)
.+++.|.-+++... ..++++..+|.||||||+|||||+++|++++||| |++|+|...
T Consensus 93 rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDE---P~sGLDi~~~ 169 (245)
T COG4555 93 RENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDE---PTSGLDIRTR 169 (245)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcC---CCCCccHHHH
Confidence 66665544333221 2356677899999999999999999999999999 999999887
Q ss_pred HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCc
Q psy2071 196 GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGR 237 (302)
Q Consensus 196 ~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~ 237 (302)
..+.+++.+.++.|.+++++||+|++++.+||++++++ .|.
T Consensus 170 r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh-~Ge 210 (245)
T COG4555 170 RKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLH-KGE 210 (245)
T ss_pred HHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEe-cCc
Confidence 88999999998889999999999999999999999999 664
No 16
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=3e-34 Score=283.33 Aligned_cols=249 Identities=48% Similarity=0.743 Sum_probs=212.7
Q ss_pred CCCCCCChhhHHHHHhhcCCChhHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHH
Q psy2071 42 FTGYPYTPRYHELHRKRITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAM 121 (302)
Q Consensus 42 ~~~~~~~~~~~~l~~~r~~lp~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~ 121 (302)
+.....++++..+...+..||++..+++|...|+++++++|.||+||||||++++++..... .+...|.+++||+++++
T Consensus 30 ~~~~~~~~~~~~~~~~~~~LPv~~~~~~i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~-~~~g~I~~tQPRRlAAr 108 (845)
T COG1643 30 MDARSRSANVPDILEYRSGLPVTAVRDEILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGL-GIAGKIGCTQPRRLAAR 108 (845)
T ss_pred hhhhhcccccchhhhccccCCcHHHHHHHHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhc-ccCCeEEecCchHHHHH
Confidence 34444445555667788899999999999999999999999999999999999999876554 45567889999999999
Q ss_pred HHHHHhhhhhccccccceeeeeeecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHHHHHHHH
Q psy2071 122 SVAQRVSEEMDCQLGQEVGYSIRFEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILMGVLKEV 201 (302)
Q Consensus 122 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~~~l~~l 201 (302)
+++.+++++++..+++.|||.++|++..+.+|+++++|.|++.|...-+.++..+++||+||+||++.+.|.++++++++
T Consensus 109 svA~RvAeel~~~~G~~VGY~iRfe~~~s~~Trik~mTdGiLlrei~~D~~Ls~ys~vIiDEaHERSl~tDilLgllk~~ 188 (845)
T COG1643 109 SVAERVAEELGEKLGETVGYSIRFESKVSPRTRIKVMTDGILLREIQNDPLLSGYSVVIIDEAHERSLNTDILLGLLKDL 188 (845)
T ss_pred HHHHHHHHHhCCCcCceeeEEEEeeccCCCCceeEEeccHHHHHHHhhCcccccCCEEEEcchhhhhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcC-CCcEEEEEEecCHHHHHhhccCCCeeeecCcCCccceeecCCCCCCC------------------CCCCccccc
Q psy2071 202 IKQRA-DLKLVIMSATLDAGKFQQYFDNAPLMNVPGRTHPVEIFYTPEPPLGA------------------GPWLPQCFT 262 (302)
Q Consensus 202 l~~~~-~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~~~~~~~~~~~~~~~~------------------~~~l~~~~~ 262 (302)
+..++ +.+++||++|.|.+.+.++++.+++++++|+.|||+++|.+++...+ ++.+ .|++
T Consensus 189 ~~~rr~DLKiIimSATld~~rfs~~f~~apvi~i~GR~fPVei~Y~~~~~~d~~l~~ai~~~v~~~~~~~~GdIL-vFLp 267 (845)
T COG1643 189 LARRRDDLKLIIMSATLDAERFSAYFGNAPVIEIEGRTYPVEIRYLPEAEADYILLDAIVAAVDIHLREGSGSIL-VFLP 267 (845)
T ss_pred HhhcCCCceEEEEecccCHHHHHHHcCCCCEEEecCCccceEEEecCCCCcchhHHHHHHHHHHHhccCCCCCEE-EECC
Confidence 88777 69999999999999999999999999999999999999987764322 2222 4666
Q ss_pred CchhHHHHhhHHHhHhhccCCCcchhhHHHHHH
Q psy2071 263 RPNEAKKAADDAKMRFAHIDGDHLTLLNVYHAF 295 (302)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~gD~ltll~l~~a~ 295 (302)
+..+++.....+.. ..-++++.++++|.++
T Consensus 268 G~~EI~~~~~~L~~---~~l~~~~~i~PLy~~L 297 (845)
T COG1643 268 GQREIERTAEWLEK---AELGDDLEILPLYGAL 297 (845)
T ss_pred cHHHHHHHHHHHHh---ccccCCcEEeeccccC
Confidence 66666655544443 1223567777777654
No 17
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.4e-35 Score=258.30 Aligned_cols=179 Identities=20% Similarity=0.248 Sum_probs=151.0
Q ss_pred HHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhh-----------hHHHHHHHhhhhhcccc
Q psy2071 67 RTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRV-----------AAMSVAQRVSEEMDCQL 135 (302)
Q Consensus 67 ~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~-----------~~~~~~~~~~~~~~~~~ 135 (302)
..++++.|++|||++|.|-+|||||||++++.+++.|+.|++.+.|.+..+. ....++|.++..++.++
T Consensus 44 v~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtV 123 (386)
T COG4175 44 VNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTV 123 (386)
T ss_pred eccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhH
Confidence 5788999999999999999999999999999999999999999999875332 23345566677788899
Q ss_pred ccceeeeeeecCCC-------------------CccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-
Q psy2071 136 GQEVGYSIRFEDCS-------------------SPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM- 195 (302)
Q Consensus 136 ~~~v~~~~~~~~~~-------------------~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~- 195 (302)
.+|++|.+...... ..+..+.+|||||+|||.|||||+.+|++|++|| |+++|||+.
T Consensus 124 l~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDE---aFSALDPLIR 200 (386)
T COG4175 124 LENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPNELSGGMQQRVGLARALANDPDILLMDE---AFSALDPLIR 200 (386)
T ss_pred hhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcccccchHHHHHHHHHHHccCCCEEEecC---chhhcChHHH
Confidence 99999998765443 2345667799999999999999999999999999 999999988
Q ss_pred -HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeee---ecCcCCccceeecCC
Q psy2071 196 -GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMN---VPGRTHPVEIFYTPE 248 (302)
Q Consensus 196 -~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~---i~g~~~~~~~~~~~~ 248 (302)
++-.++++...+.++||+++|||++++.++.|||++|+ +...++|.|+...|.
T Consensus 201 ~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG~rIaimkdG~ivQ~Gtp~eIl~~PA 257 (386)
T COG4175 201 TEMQDELLELQAKLKKTIVFITHDLDEALRIGDRIAIMKDGEIVQVGTPEEILLNPA 257 (386)
T ss_pred HHHHHHHHHHHHHhCCeEEEEecCHHHHHhccceEEEecCCeEEEeCCHHHHHcCcc
Confidence 44455555566778999999999999999999999999 333458888887764
No 18
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=2.9e-35 Score=250.41 Aligned_cols=169 Identities=18% Similarity=0.178 Sum_probs=133.3
Q ss_pred hHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHH-----------HHHHHhhhhhc
Q psy2071 64 FEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAM-----------SVAQRVSEEMD 132 (302)
Q Consensus 64 ~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~-----------~~~~~~~~~~~ 132 (302)
..+++++++.|++||+++|+|||||||||||+++.|+..|++|.+.+.|.+....... .+.|.....+.
T Consensus 18 ~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~ 97 (226)
T COG1136 18 VEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPD 97 (226)
T ss_pred eEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCCCC
Confidence 3468999999999999999999999999999999999999999999999654332211 12222233445
Q ss_pred cccccceeeeeeecCCC-------------------Ccc-ccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchH
Q psy2071 133 CQLGQEVGYSIRFEDCS-------------------SPK-TVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATD 192 (302)
Q Consensus 133 ~~~~~~v~~~~~~~~~~-------------------~~~-~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD 192 (302)
.++.+||..++.+.... ... ..+..|||||+|||+|||||+.+|++|+.|| ||.++|
T Consensus 98 ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~iilADE---PTgnLD 174 (226)
T COG1136 98 LTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADE---PTGNLD 174 (226)
T ss_pred CCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCeEEeeC---ccccCC
Confidence 67777777433221111 112 4567899999999999999999999999999 999999
Q ss_pred HHH-HHHHHHHHHcC-CCcEEEEEEecCHHHHHhhccCCCeeeecCc
Q psy2071 193 ILM-GVLKEVIKQRA-DLKLVIMSATLDAGKFQQYFDNAPLMNVPGR 237 (302)
Q Consensus 193 ~~~-~~l~~ll~~~~-~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~ 237 (302)
... ..+.+++.... +.|.|+++||||...+. +|||++.|. .|+
T Consensus 175 ~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~-~~dr~i~l~-dG~ 219 (226)
T COG1136 175 SKTAKEVLELLRELNKERGKTIIMVTHDPELAK-YADRVIELK-DGK 219 (226)
T ss_pred hHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHH-hCCEEEEEe-CCe
Confidence 877 77888887764 45899999999987665 999999998 776
No 19
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.1e-35 Score=246.18 Aligned_cols=174 Identities=17% Similarity=0.181 Sum_probs=140.5
Q ss_pred CCChhHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccC-----CCEEEeecCchh--hhHHHHHHHh---h-
Q psy2071 60 TLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSV-----GAKAVACTQPRR--VAAMSVAQRV---S- 128 (302)
Q Consensus 60 ~lp~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~-----G~~~i~~~~~~~--~~~~~~~~~~---~- 128 (302)
.+...+++++|+..|+++++++|+||+||||||+|+++..+..... |++.+.|.+... +....+..++ +
T Consensus 16 yYg~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMVFQ 95 (253)
T COG1117 16 YYGDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQ 95 (253)
T ss_pred EECchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHHheeecc
Confidence 3456778999999999999999999999999999999988766544 788998877543 2233333333 2
Q ss_pred --hhhccccccceeeeeeecCCCC-----------------------ccccccccCHHHHHHHhccccCCCCCcEEEEcC
Q psy2071 129 --EEMDCQLGQEVGYSIRFEDCSS-----------------------PKTVLKYMTDGMLLREGMSDPMLENYQVILLDE 183 (302)
Q Consensus 129 --~~~~~~~~~~v~~~~~~~~~~~-----------------------~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE 183 (302)
..+..++++||.|.++.+.... .+.....|||||+||++|||||+.+|++|+|||
T Consensus 96 kPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIARalAv~PeVlLmDE 175 (253)
T COG1117 96 KPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALAVKPEVLLMDE 175 (253)
T ss_pred CCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHHHHhcCCcEEEecC
Confidence 2345789999999988765432 011223399999999999999999999999999
Q ss_pred CCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 184 AHERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 184 ~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
|+++|||.. ..+.+++..+++ +.||++|||+|..+.+++|+.+++. .|+.
T Consensus 176 ---PtSALDPIsT~kIEeLi~eLk~-~yTIviVTHnmqQAaRvSD~taFf~-~G~L 226 (253)
T COG1117 176 ---PTSALDPISTLKIEELITELKK-KYTIVIVTHNMQQAARVSDYTAFFY-LGEL 226 (253)
T ss_pred ---cccccCchhHHHHHHHHHHHHh-ccEEEEEeCCHHHHHHHhHhhhhhc-ccEE
Confidence 999999988 789999988774 7899999999999999999999998 6653
No 20
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.2e-36 Score=252.99 Aligned_cols=169 Identities=17% Similarity=0.185 Sum_probs=131.5
Q ss_pred HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhh----hHHHHHHHhhh------hhccc
Q psy2071 65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRV----AAMSVAQRVSE------EMDCQ 134 (302)
Q Consensus 65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~----~~~~~~~~~~~------~~~~~ 134 (302)
.++++|++.|.+||+++|+|++|||||||.++++|+.+|+.|+|.++|...... ......+.+++ .+..+
T Consensus 21 ~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~t 100 (252)
T COG1124 21 HALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRT 100 (252)
T ss_pred hhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhccceeEEecCCccccCcchh
Confidence 478999999999999999999999999999999999999999999999543211 11111222222 23334
Q ss_pred cccceeeeeeecCCC------------------CccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-
Q psy2071 135 LGQEVGYSIRFEDCS------------------SPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM- 195 (302)
Q Consensus 135 ~~~~v~~~~~~~~~~------------------~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~- 195 (302)
+++.+...++.+... ..++....|||||+||++|||||+.+|++||+|| |+++||...
T Consensus 101 v~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~PklLIlDE---ptSaLD~siQ 177 (252)
T COG1124 101 VGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDE---PTSALDVSVQ 177 (252)
T ss_pred HHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCCCEEEecC---chhhhcHHHH
Confidence 444444444332111 2245566799999999999999999999999999 999999877
Q ss_pred HHHHHHHHHc-CCCcEEEEEEecCHHHHHhhccCCCeeeecCc
Q psy2071 196 GVLKEVIKQR-ADLKLVIMSATLDAGKFQQYFDNAPLMNVPGR 237 (302)
Q Consensus 196 ~~l~~ll~~~-~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~ 237 (302)
..+.+++... ++.+.|++++|||+..+..+|||++||. .|.
T Consensus 178 a~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~-~G~ 219 (252)
T COG1124 178 AQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMD-NGQ 219 (252)
T ss_pred HHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeee-CCe
Confidence 6777777654 4568999999999999999999999999 664
No 21
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=1.1e-34 Score=236.02 Aligned_cols=175 Identities=17% Similarity=0.176 Sum_probs=143.3
Q ss_pred CCCh-hHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHH---HHH-------HHhh
Q psy2071 60 TLPV-FEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAM---SVA-------QRVS 128 (302)
Q Consensus 60 ~lp~-~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~---~~~-------~~~~ 128 (302)
.+|. ..+++++++.|++||++-|+||+|||||||+++|++...|+.|.+.++|.+..++... .+. |..-
T Consensus 10 ~Y~~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~r 89 (223)
T COG2884 10 AYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFR 89 (223)
T ss_pred hcCCCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhheeeeEeeecc
Confidence 3443 3379999999999999999999999999999999999999999999999875433211 111 1112
Q ss_pred hhhccccccceeeeeeecCCCC-------------------ccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCc
Q psy2071 129 EEMDCQLGQEVGYSIRFEDCSS-------------------PKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTL 189 (302)
Q Consensus 129 ~~~~~~~~~~v~~~~~~~~~~~-------------------~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~ 189 (302)
.....++++||++.++...... .+.....||||++||++||||++.+|++||.|| ||.
T Consensus 90 LL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADE---PTG 166 (223)
T COG2884 90 LLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADE---PTG 166 (223)
T ss_pred ccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeecC---CCC
Confidence 2346789999999887654331 223455699999999999999999999999999 999
Q ss_pred chHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 190 ATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 190 ~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
++|+-. ..+.+++...+..|.||+++|||.+.+.++-.++..+. .|+.
T Consensus 167 NLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~-~Grl 215 (223)
T COG2884 167 NLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALE-DGRL 215 (223)
T ss_pred CCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEe-CCEE
Confidence 999877 77888888888899999999999999999988888888 7764
No 22
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=6.6e-35 Score=261.89 Aligned_cols=176 Identities=16% Similarity=0.145 Sum_probs=137.9
Q ss_pred cCCC-hhHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhh--hHHHHHHHh----hhhh
Q psy2071 59 ITLP-VFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRV--AAMSVAQRV----SEEM 131 (302)
Q Consensus 59 ~~lp-~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~--~~~~~~~~~----~~~~ 131 (302)
+.+. ...+++++++.|++|++++|+||||||||||+++|+|+..|++|++.+.|.++... .......++ ....
T Consensus 12 k~~~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~~ 91 (293)
T COG1131 12 KKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYP 91 (293)
T ss_pred EEeCCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheEEEccCCCCCc
Confidence 3445 35578999999999999999999999999999999999999999999999765431 111111111 1223
Q ss_pred ccccccceeeeeeecCC-------------------CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchH
Q psy2071 132 DCQLGQEVGYSIRFEDC-------------------SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATD 192 (302)
Q Consensus 132 ~~~~~~~v~~~~~~~~~-------------------~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD 192 (302)
..++.+++.|...+... ...++.+..||+|||||++||.||+.+|+++|||| ||+|+|
T Consensus 92 ~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDE---Pt~GLD 168 (293)
T COG1131 92 ELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDE---PTSGLD 168 (293)
T ss_pred cccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCEEEECC---CCcCCC
Confidence 34555554443322211 11256678899999999999999999999999999 999999
Q ss_pred HHH-HHHHHHHHHcCCCc-EEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 193 ILM-GVLKEVIKQRADLK-LVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 193 ~~~-~~l~~ll~~~~~~~-~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
+.. ..++++++.+.+.+ .||+++||.++++..+||++.+|+ .|+.
T Consensus 169 p~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~-~G~~ 215 (293)
T COG1131 169 PESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILN-DGKI 215 (293)
T ss_pred HHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEe-CCEE
Confidence 988 78999999877766 899999999999999999999999 6653
No 23
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.1e-34 Score=245.47 Aligned_cols=187 Identities=16% Similarity=0.109 Sum_probs=145.5
Q ss_pred hhcCCChhHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHH--------HHHHHhh
Q psy2071 57 KRITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAM--------SVAQRVS 128 (302)
Q Consensus 57 ~r~~lp~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~--------~~~~~~~ 128 (302)
..+.+....+++++++.+++|++++|||||||||||++++|+|.++|++|.+.+.|.+....... .-+|...
T Consensus 10 l~k~FGGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~r 89 (250)
T COG0411 10 LSKRFGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGIARTFQITR 89 (250)
T ss_pred ceeecCCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccceeeccccc
Confidence 33456677789999999999999999999999999999999999999999999998764332221 1223333
Q ss_pred hhhccccccceeeeeeec-------------------------------CCCCccccccccCHHHHHHHhccccCCCCCc
Q psy2071 129 EEMDCQLGQEVGYSIRFE-------------------------------DCSSPKTVLKYMTDGMLLREGMSDPMLENYQ 177 (302)
Q Consensus 129 ~~~~~~~~~~v~~~~~~~-------------------------------~~~~~~~~~~~lS~G~~qr~~la~al~~~p~ 177 (302)
.+..+++.+|+....... .....++....||+|+++|+.|||||+.+|+
T Consensus 90 lF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~LEIArALa~~P~ 169 (250)
T COG0411 90 LFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRLEIARALATQPK 169 (250)
T ss_pred ccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhHHHHHHHHHhcCCC
Confidence 345667777665432100 0112345567799999999999999999999
Q ss_pred EEEEcCCCCCCcchHHHH-HHHHHHHHHcCC-CcEEEEEEecCHHHHHhhccCCCeeeecCc----CCccceeecC
Q psy2071 178 VILLDEAHERTLATDILM-GVLKEVIKQRAD-LKLVIMSATLDAGKFQQYFDNAPLMNVPGR----THPVEIFYTP 247 (302)
Q Consensus 178 lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~-~~~~ii~~thd~~~~~~~~d~~~~l~i~g~----~~~~~~~~~~ 247 (302)
+|+||| |.+|+.+.. ..+.+++...++ .++||+++.|||+.+..+|||++||+ .|+ +.|.++...|
T Consensus 170 lLLLDE---PaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~-~G~~IAeG~P~eV~~dp 241 (250)
T COG0411 170 LLLLDE---PAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLN-YGEVIAEGTPEEVRNNP 241 (250)
T ss_pred EEEecC---ccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEecc-CCcCcccCCHHHHhcCH
Confidence 999999 999999776 777788877665 57999999999999999999999999 554 4666665554
No 24
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=5.8e-34 Score=230.30 Aligned_cols=165 Identities=16% Similarity=0.204 Sum_probs=132.2
Q ss_pred HHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecC-----chhhhHHHHHHHhhhhhccccccceeeeee
Q psy2071 70 FMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQ-----PRRVAAMSVAQRVSEEMDCQLGQEVGYSIR 144 (302)
Q Consensus 70 i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 144 (302)
+..+|+.||+++|+||+|||||||+++|+|+..|.+|.+.|+|.+ |.......+.+.-..+-..++.+|+++.+.
T Consensus 18 fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigLGl~ 97 (231)
T COG3840 18 FDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGLGLS 97 (231)
T ss_pred EEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhcccCC
Confidence 466889999999999999999999999999999999999999875 323333333333333445678888887653
Q ss_pred ecCC-------------------CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHHH
Q psy2071 145 FEDC-------------------SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVIKQ 204 (302)
Q Consensus 145 ~~~~-------------------~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~ 204 (302)
-... ...++....||||||||+++||+|+.+-.+++||| |++++|+.+ ..+..++.+
T Consensus 98 P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~PilLLDE---PFsALdP~LR~eMl~Lv~~ 174 (231)
T COG3840 98 PGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLLDE---PFSALDPALRAEMLALVSQ 174 (231)
T ss_pred cccccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCCeEEecC---chhhcCHHHHHHHHHHHHH
Confidence 2111 12345667799999999999999999999999999 999999988 555556554
Q ss_pred -cCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 205 -RADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 205 -~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
..+.+.|++++||..+++..++++++++. .|++
T Consensus 175 l~~E~~~TllmVTH~~~Da~~ia~~~~fl~-~Gri 208 (231)
T COG3840 175 LCDERKMTLLMVTHHPEDAARIADRVVFLD-NGRI 208 (231)
T ss_pred HHHhhCCEEEEEeCCHHHHHHhhhceEEEe-CCEE
Confidence 45668999999999999999999999999 8875
No 25
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.5e-34 Score=248.73 Aligned_cols=170 Identities=18% Similarity=0.201 Sum_probs=137.3
Q ss_pred HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchh-hhHHHHHHHh---h-----hhhcccc
Q psy2071 65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRR-VAAMSVAQRV---S-----EEMDCQL 135 (302)
Q Consensus 65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~-~~~~~~~~~~---~-----~~~~~~~ 135 (302)
.+++++++.|++|++++|+|+||||||||+++++|+++|++|.+.++|..... .....+.+++ . +.+..++
T Consensus 18 ~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~~~tV 97 (235)
T COG1122 18 AALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTV 97 (235)
T ss_pred eeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcceEEEEECcccccccCcH
Confidence 46789999999999999999999999999999999999999999998876431 2222222222 1 2334566
Q ss_pred ccceeeeeeecCCC-------------------CccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-
Q psy2071 136 GQEVGYSIRFEDCS-------------------SPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM- 195 (302)
Q Consensus 136 ~~~v~~~~~~~~~~-------------------~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~- 195 (302)
.+.+.|........ ..++.+..|||||+||++||.+|+.+|++||||| ||+++|+..
T Consensus 98 ~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P~iliLDE---Pta~LD~~~~ 174 (235)
T COG1122 98 EDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDE---PTAGLDPKGR 174 (235)
T ss_pred HHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcCCCEEEEcC---CCCCCCHHHH
Confidence 66777666443322 1345667799999999999999999999999999 999999988
Q ss_pred HHHHHHHHHcCCC-cEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 196 GVLKEVIKQRADL-KLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 196 ~~l~~ll~~~~~~-~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
..+.+++.+++.. |.|+|++|||++.+..+||++++|+ .|+.
T Consensus 175 ~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~-~G~i 217 (235)
T COG1122 175 RELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLD-DGKI 217 (235)
T ss_pred HHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEE-CCEE
Confidence 7888888877655 7999999999999999999999999 6653
No 26
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.9e-34 Score=238.71 Aligned_cols=170 Identities=12% Similarity=0.152 Sum_probs=130.9
Q ss_pred hHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHH------HHhhh----hhcc
Q psy2071 64 FEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVA------QRVSE----EMDC 133 (302)
Q Consensus 64 ~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~------~~~~~----~~~~ 133 (302)
..++++|++.|++||+++|+|++||||||||++|.|+..|++|++.++|.++......... ..+++ ....
T Consensus 17 ~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~~iGmIfQ~~nLv~r~ 96 (258)
T COG3638 17 HQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRL 96 (258)
T ss_pred ceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHHhceeEeccCCccccc
Confidence 3468999999999999999999999999999999999999999999999876433222111 11122 2223
Q ss_pred ccccceeeee-----ee----------------------cCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCC
Q psy2071 134 QLGQEVGYSI-----RF----------------------EDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHE 186 (302)
Q Consensus 134 ~~~~~v~~~~-----~~----------------------~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~ 186 (302)
++.+||.... .+ .......++...|||||+|||+|||||+.+|++|+.||
T Consensus 97 sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaIARaL~Q~pkiILADE--- 173 (258)
T COG3638 97 SVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARALVQQPKIILADE--- 173 (258)
T ss_pred HHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHHHHHHHhcCCCEEecCC---
Confidence 4444443221 00 00111234556799999999999999999999999999
Q ss_pred CCcchHHHH-HHHHHHHHHc-CCCcEEEEEEecCHHHHHhhccCCCeeeecCc
Q psy2071 187 RTLATDILM-GVLKEVIKQR-ADLKLVIMSATLDAGKFQQYFDNAPLMNVPGR 237 (302)
Q Consensus 187 p~~~lD~~~-~~l~~ll~~~-~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~ 237 (302)
|+++|||.. ..+.+++++. .+.|+|+++.-|+++.+.+||||++-|+ .|+
T Consensus 174 PvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~-~G~ 225 (258)
T COG3638 174 PVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLK-AGR 225 (258)
T ss_pred cccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEec-CCc
Confidence 999999988 7777777754 4568999999999999999999999999 776
No 27
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.98 E-value=1.3e-33 Score=227.97 Aligned_cols=188 Identities=17% Similarity=0.160 Sum_probs=147.1
Q ss_pred hcCCChhHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCch---------------hhh-HH
Q psy2071 58 RITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPR---------------RVA-AM 121 (302)
Q Consensus 58 r~~lp~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~---------------~~~-~~ 121 (302)
.+.+....+++++++.-++|+++.|||.+||||||+|+||..+..|+.|.|.++|...+ .+. ..
T Consensus 13 HK~~G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ad~~q~~r~R 92 (256)
T COG4598 13 HKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPADKRQLQRLR 92 (256)
T ss_pred HhhcccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeCCHHHHHHHH
Confidence 34567778899999999999999999999999999999999999999999999886431 110 01
Q ss_pred ----HHHHHhhhhhccccccceeeeee-e-------------------cCCCCccccccccCHHHHHHHhccccCCCCCc
Q psy2071 122 ----SVAQRVSEEMDCQLGQEVGYSIR-F-------------------EDCSSPKTVLKYMTDGMLLREGMSDPMLENYQ 177 (302)
Q Consensus 122 ----~~~~~~~~~~~~~~~~~v~~~~~-~-------------------~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~ 177 (302)
.+.+.+..+..+++.+||-.... . ......+.....|||||+||++|||||+.+|+
T Consensus 93 s~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQQR~aIARaLameP~ 172 (256)
T COG4598 93 TRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVAIARALAMEPE 172 (256)
T ss_pred HHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccCchHHHHHHHHHHHhcCCc
Confidence 11222222233455555543221 0 00112234456799999999999999999999
Q ss_pred EEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeee---ecCcCCccceeecCC
Q psy2071 178 VILLDEAHERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMN---VPGRTHPVEIFYTPE 248 (302)
Q Consensus 178 lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~---i~g~~~~~~~~~~~~ 248 (302)
++++|| ||+++||.+ ..+.++++++.+.|.|++.+||.|.++.+.+..+++++ ++..+.|.++|-.|.
T Consensus 173 vmLFDE---PTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~fLh~G~iEE~G~P~qvf~nP~ 244 (256)
T COG4598 173 VMLFDE---PTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIEEEGPPEQVFGNPQ 244 (256)
T ss_pred eEeecC---CcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhheEEeecceecccCChHHHhcCCC
Confidence 999999 999999887 88888888888999999999999999999999999999 666778888887775
No 28
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.98 E-value=6.8e-35 Score=263.82 Aligned_cols=174 Identities=16% Similarity=0.147 Sum_probs=134.1
Q ss_pred CCChhHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhH--HHHHHHhh----hhhcc
Q psy2071 60 TLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAA--MSVAQRVS----EEMDC 133 (302)
Q Consensus 60 ~lp~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~--~~~~~~~~----~~~~~ 133 (302)
.++...+++++++.|++|++++|+||||||||||+++|+|+++|++|++.+.|.++..... ......+. .....
T Consensus 16 ~~~~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~ 95 (306)
T PRK13537 16 RYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGVVPQFDNLDPDF 95 (306)
T ss_pred EECCeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcEEEEeccCcCCCCC
Confidence 3444457899999999999999999999999999999999999999999999876533211 00011111 11223
Q ss_pred ccccceeeeeee-------------------cCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHH
Q psy2071 134 QLGQEVGYSIRF-------------------EDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDIL 194 (302)
Q Consensus 134 ~~~~~v~~~~~~-------------------~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~ 194 (302)
++.+++.+.... ......++.+..||+||+||++||+||+.+|++||||| ||+++|+.
T Consensus 96 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~lllLDE---Pt~gLD~~ 172 (306)
T PRK13537 96 TVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDE---PTTGLDPQ 172 (306)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCCEEEEeC---CCcCCCHH
Confidence 444444321111 11112356677899999999999999999999999999 99999998
Q ss_pred H-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCc
Q psy2071 195 M-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGR 237 (302)
Q Consensus 195 ~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~ 237 (302)
. ..+++++++..+.|.||+++||+++++.++||++++|+ .|+
T Consensus 173 ~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~-~G~ 215 (306)
T PRK13537 173 ARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIE-EGR 215 (306)
T ss_pred HHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEE-CCE
Confidence 8 78889988876668999999999999999999999998 554
No 29
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.98 E-value=4.9e-34 Score=244.28 Aligned_cols=169 Identities=18% Similarity=0.179 Sum_probs=128.7
Q ss_pred HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHH----HHHHHhh-hhhccccccce
Q psy2071 65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAM----SVAQRVS-EEMDCQLGQEV 139 (302)
Q Consensus 65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~----~~~~~~~-~~~~~~~~~~v 139 (302)
.+++++++.+++|++++|+||||||||||+++|+|+++|++|++.+.|.+....... .+.+... .....++.+++
T Consensus 14 ~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e~l 93 (205)
T cd03226 14 EILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVREEL 93 (205)
T ss_pred ceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEecChhhhhhhccHHHHH
Confidence 357889999999999999999999999999999999999999999988654211000 0111100 11123444444
Q ss_pred eeeeee---------------cCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHH
Q psy2071 140 GYSIRF---------------EDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVIK 203 (302)
Q Consensus 140 ~~~~~~---------------~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~ 203 (302)
.+.... ......++.+..||+||+||+++|+||+.+|++||||| |++++|+.. ..+.+++.
T Consensus 94 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE---Pt~~LD~~~~~~l~~~l~ 170 (205)
T cd03226 94 LLGLKELDAGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDE---PTSGLDYKNMERVGELIR 170 (205)
T ss_pred hhhhhhcCccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeC---CCccCCHHHHHHHHHHHH
Confidence 332111 00112345667899999999999999999999999999 999999887 78888888
Q ss_pred HcCCCcEEEEEEecCHHHHHhhccCCCeeeecCc
Q psy2071 204 QRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGR 237 (302)
Q Consensus 204 ~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~ 237 (302)
...+.+.+++++||+++++..+||++++|+ .|+
T Consensus 171 ~~~~~~~tii~~sH~~~~~~~~~d~i~~l~-~G~ 203 (205)
T cd03226 171 ELAAQGKAVIVITHDYEFLAKVCDRVLLLA-NGA 203 (205)
T ss_pred HHHHCCCEEEEEeCCHHHHHHhCCEEEEEE-CCE
Confidence 765558899999999999999999999998 554
No 30
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.98 E-value=6.2e-34 Score=245.56 Aligned_cols=168 Identities=15% Similarity=0.167 Sum_probs=128.0
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhH------HHHHHHhhh----hhcccc
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAA------MSVAQRVSE----EMDCQL 135 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~------~~~~~~~~~----~~~~~~ 135 (302)
+++++++.|++|++++|+||||||||||+++|+|+++|++|++.++|.+...... ......+.+ ....++
T Consensus 18 il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 97 (216)
T TIGR00960 18 ALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLLSDRTV 97 (216)
T ss_pred EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHhceEEecCccccccccH
Confidence 5788999999999999999999999999999999999999999999875422110 000111111 122344
Q ss_pred ccceeeeeee-------------------cCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-
Q psy2071 136 GQEVGYSIRF-------------------EDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM- 195 (302)
Q Consensus 136 ~~~v~~~~~~-------------------~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~- 195 (302)
.+++.+.... ......++.+..||+||+||++||+||+.+|++||||| |++++|+..
T Consensus 98 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDE---Pt~~LD~~~~ 174 (216)
T TIGR00960 98 YDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHKPPLLLADE---PTGNLDPELS 174 (216)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC---CCCcCCHHHH
Confidence 4554432110 00011244567799999999999999999999999999 999999887
Q ss_pred HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCc
Q psy2071 196 GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGR 237 (302)
Q Consensus 196 ~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~ 237 (302)
..+.+++.+..+.+.|||++|||.+++..+||++++|+ .|+
T Consensus 175 ~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~-~G~ 215 (216)
T TIGR00960 175 RDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLS-RGR 215 (216)
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEe-CCc
Confidence 77888887765558899999999999999999999997 554
No 31
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.98 E-value=3.4e-34 Score=263.72 Aligned_cols=178 Identities=20% Similarity=0.210 Sum_probs=138.5
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhh-----hHHHHHHHhhhhhcccccccee
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRV-----AAMSVAQRVSEEMDCQLGQEVG 140 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~v~ 140 (302)
+++++++.|++|++++|+||||||||||+++|+|+.+|++|++.++|...... ....+.+....++..++.+|+.
T Consensus 19 ~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~ 98 (356)
T PRK11650 19 VIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAMVFQNYALYPHMSVRENMA 98 (356)
T ss_pred EEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCccccCCCCHHHHHH
Confidence 57889999999999999999999999999999999999999999998654221 1111222223344567777777
Q ss_pred eeeeecCC-------------------CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHH
Q psy2071 141 YSIRFEDC-------------------SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKE 200 (302)
Q Consensus 141 ~~~~~~~~-------------------~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ 200 (302)
|..+.... ...++.+..|||||+||++|||||+.+|++||||| |++++|... ..+.+
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~llLLDE---P~s~LD~~~r~~l~~ 175 (356)
T PRK11650 99 YGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDE---PLSNLDAKLRVQMRL 175 (356)
T ss_pred hHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC---CcccCCHHHHHHHHH
Confidence 66532111 11244566799999999999999999999999999 999999887 66777
Q ss_pred HHHHcC-CCcEEEEEEecCHHHHHhhccCCCeeeecCcC----CccceeecC
Q psy2071 201 VIKQRA-DLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT----HPVEIFYTP 247 (302)
Q Consensus 201 ll~~~~-~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~----~~~~~~~~~ 247 (302)
.++... +.+.|+|++|||.+++..+||++++|+ .|+. .|.+++..|
T Consensus 176 ~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~-~G~i~~~g~~~~~~~~p 226 (356)
T PRK11650 176 EIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMN-GGVAEQIGTPVEVYEKP 226 (356)
T ss_pred HHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEe-CCEEEEECCHHHHHhCC
Confidence 776544 458999999999999999999999998 5653 555555444
No 32
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.98 E-value=2.7e-34 Score=262.64 Aligned_cols=169 Identities=17% Similarity=0.192 Sum_probs=131.7
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHH----------HHHHhhhhhcccc
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMS----------VAQRVSEEMDCQL 135 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~----------~~~~~~~~~~~~~ 135 (302)
+++++++.|++|++++|+|+||||||||+++|+|+++|++|++.++|.+........ +.+........++
T Consensus 20 ~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~~~~tv 99 (343)
T TIGR02314 20 ALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSRTV 99 (343)
T ss_pred EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEECCccccccCcH
Confidence 578999999999999999999999999999999999999999999987643221110 1111111223456
Q ss_pred ccceeeeeeecC-------------------CCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-
Q psy2071 136 GQEVGYSIRFED-------------------CSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM- 195 (302)
Q Consensus 136 ~~~v~~~~~~~~-------------------~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~- 195 (302)
.+++.+...... ....+..+..|||||+||++|||||+.+|++||+|| ||+++|+..
T Consensus 100 ~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~~P~iLLlDE---Pts~LD~~t~ 176 (343)
T TIGR02314 100 FGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDE---ATSALDPATT 176 (343)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeC---CcccCCHHHH
Confidence 666654332110 012245567799999999999999999999999999 999999888
Q ss_pred HHHHHHHHHcCC-CcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 196 GVLKEVIKQRAD-LKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 196 ~~l~~ll~~~~~-~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
..+.+++++..+ .+.|||++||+++.+.++||++++|+ .|+.
T Consensus 177 ~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~-~G~i 219 (343)
T TIGR02314 177 QSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVIS-NGEL 219 (343)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEE-CCEE
Confidence 778888877644 58999999999999999999999998 5654
No 33
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.97 E-value=6.3e-34 Score=257.43 Aligned_cols=169 Identities=18% Similarity=0.187 Sum_probs=130.1
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhh--HHHHHHHhhh----hhccccccce
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVA--AMSVAQRVSE----EMDCQLGQEV 139 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~--~~~~~~~~~~----~~~~~~~~~v 139 (302)
+++++++.|++|++++|+||||||||||+++|+|+++|++|++.+.|.+..... .......+.+ ....++.+++
T Consensus 8 ~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l 87 (302)
T TIGR01188 8 AVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGRENL 87 (302)
T ss_pred EEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcHHHHH
Confidence 578999999999999999999999999999999999999999999886542211 0000111111 1223444444
Q ss_pred eeeeee-------------------cCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHH
Q psy2071 140 GYSIRF-------------------EDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLK 199 (302)
Q Consensus 140 ~~~~~~-------------------~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~ 199 (302)
.+.... ......++.+..||+||+||++||+||+.+|++||||| ||+++|+.. ..+.
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDE---Pt~gLD~~~~~~l~ 164 (302)
T TIGR01188 88 EMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDE---PTTGLDPRTRRAIW 164 (302)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeC---CCcCCCHHHHHHHH
Confidence 322111 00112345677899999999999999999999999999 999999888 7888
Q ss_pred HHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 200 EVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 200 ~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
++++...+.|.||+++||+++++.++||++++|+ .|+.
T Consensus 165 ~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~-~G~i 202 (302)
T TIGR01188 165 DYIRALKEEGVTILLTTHYMEEADKLCDRIAIID-HGRI 202 (302)
T ss_pred HHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEE-CCEE
Confidence 8888776568999999999999999999999998 5553
No 34
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.97 E-value=1.6e-33 Score=237.51 Aligned_cols=174 Identities=13% Similarity=0.113 Sum_probs=142.1
Q ss_pred HhhcCCChhHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhh----hh
Q psy2071 56 RKRITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSE----EM 131 (302)
Q Consensus 56 ~~r~~lp~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~----~~ 131 (302)
+..+++..+.+.++|++.+++|++.+++|+|||||||.+++|+|++.|++|.|.++|....... .....++.. +.
T Consensus 7 ~vtK~Fg~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~~-~~rIGyLPEERGLy~ 85 (300)
T COG4152 7 GVTKSFGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEI-KNRIGYLPEERGLYP 85 (300)
T ss_pred cchhccCceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhhh-hhhcccChhhhccCc
Confidence 3456677888899999999999999999999999999999999999999999999997643211 111112222 22
Q ss_pred ccccccceeeeeee-------------------cCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchH
Q psy2071 132 DCQLGQEVGYSIRF-------------------EDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATD 192 (302)
Q Consensus 132 ~~~~~~~v~~~~~~-------------------~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD 192 (302)
.+++.+.+.|..++ +.......+++.||.|++|++.+..+++++|++||||| |++|+|
T Consensus 86 k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDE---PFSGLD 162 (300)
T COG4152 86 KMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDE---PFSGLD 162 (300)
T ss_pred cCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecC---CccCCC
Confidence 34455555444332 22223456788899999999999999999999999999 999999
Q ss_pred HHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeee
Q psy2071 193 ILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMN 233 (302)
Q Consensus 193 ~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~ 233 (302)
|+. +++++.+.+.++.|.||+++||.|+.++++||++++|+
T Consensus 163 PVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~llmL~ 204 (300)
T COG4152 163 PVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLK 204 (300)
T ss_pred hhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhheec
Confidence 999 89999999999999999999999999999999999998
No 35
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=2.1e-34 Score=264.55 Aligned_cols=180 Identities=19% Similarity=0.262 Sum_probs=139.9
Q ss_pred HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhh-----hHHHHHHHhhhhhccccccce
Q psy2071 65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRV-----AAMSVAQRVSEEMDCQLGQEV 139 (302)
Q Consensus 65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~v 139 (302)
.+++++++.|++|++++|+||||||||||+++|+|+++|++|++.++|...... ....+.+.....+..++.+|+
T Consensus 20 ~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~~tv~eNi 99 (351)
T PRK11432 20 TVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDICMVFQSYALFPHMSLGENV 99 (351)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCCHHHHH
Confidence 357899999999999999999999999999999999999999999998653221 111222333334456777887
Q ss_pred eeeeeecCC-------------------CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHH
Q psy2071 140 GYSIRFEDC-------------------SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLK 199 (302)
Q Consensus 140 ~~~~~~~~~-------------------~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~ 199 (302)
.|..+.... ...++.+..|||||+||++|||||+.+|++||||| |++++|... ..+.
T Consensus 100 ~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~lLLLDE---P~s~LD~~~r~~l~ 176 (351)
T PRK11432 100 GYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDE---PLSNLDANLRRSMR 176 (351)
T ss_pred HHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcC---CcccCCHHHHHHHH
Confidence 765432110 11245567799999999999999999999999999 999999887 6777
Q ss_pred HHHHHcC-CCcEEEEEEecCHHHHHhhccCCCeeeecCcC----CccceeecCC
Q psy2071 200 EVIKQRA-DLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT----HPVEIFYTPE 248 (302)
Q Consensus 200 ~ll~~~~-~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~----~~~~~~~~~~ 248 (302)
+.++... +.+.|++++|||.+++..+||++++|+ .|+. .|.+++..|.
T Consensus 177 ~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~-~G~i~~~g~~~~~~~~p~ 229 (351)
T PRK11432 177 EKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMN-KGKIMQIGSPQELYRQPA 229 (351)
T ss_pred HHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEE-CCEEEEEcCHHHHHhCCC
Confidence 7776553 458999999999999999999999998 5543 5656555443
No 36
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.97 E-value=2.9e-34 Score=263.89 Aligned_cols=169 Identities=18% Similarity=0.192 Sum_probs=132.3
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHH-----------HHHHHhhhhhccc
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAM-----------SVAQRVSEEMDCQ 134 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~-----------~~~~~~~~~~~~~ 134 (302)
+++++++.|++||+++|+|+||||||||+++|+|+++|++|++.++|.+....... .+.+........+
T Consensus 8 ~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~~T 87 (363)
T TIGR01186 8 GVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPHMT 87 (363)
T ss_pred eEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCCCC
Confidence 46889999999999999999999999999999999999999999999764332111 1112222233456
Q ss_pred cccceeeeeeecC-------------------CCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH
Q psy2071 135 LGQEVGYSIRFED-------------------CSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM 195 (302)
Q Consensus 135 ~~~~v~~~~~~~~-------------------~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~ 195 (302)
+.+++.+...+.. ....++.+..|||||+||++|||||+.+|++||||| |++++|+..
T Consensus 88 V~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDE---P~saLD~~~ 164 (363)
T TIGR01186 88 ILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDE---AFSALDPLI 164 (363)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC---CcccCCHHH
Confidence 6666655432211 012345567799999999999999999999999999 999999988
Q ss_pred -HHHHHHHHHcC-CCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 196 -GVLKEVIKQRA-DLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 196 -~~l~~ll~~~~-~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
..+.+++.... +.+.||+++|||++++..+||++++|+ .|+.
T Consensus 165 r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~-~G~i 208 (363)
T TIGR01186 165 RDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMK-AGEI 208 (363)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEe-CCEE
Confidence 77777777654 458999999999999999999999998 5543
No 37
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.97 E-value=5.1e-34 Score=261.06 Aligned_cols=176 Identities=18% Similarity=0.148 Sum_probs=134.0
Q ss_pred hcCCChhHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhH--HH----HHHHhhhhh
Q psy2071 58 RITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAA--MS----VAQRVSEEM 131 (302)
Q Consensus 58 r~~lp~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~--~~----~~~~~~~~~ 131 (302)
.+.++...+++++++.|++|++++|+||||||||||+++|+|+++|++|++.++|.+...... .. +.+......
T Consensus 48 ~k~y~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ig~v~q~~~~~~ 127 (340)
T PRK13536 48 SKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIGVVPQFDNLDL 127 (340)
T ss_pred EEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhccEEEEeCCccCCC
Confidence 344454557899999999999999999999999999999999999999999999976432110 00 001111112
Q ss_pred ccccccceeeeee-------------------ecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchH
Q psy2071 132 DCQLGQEVGYSIR-------------------FEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATD 192 (302)
Q Consensus 132 ~~~~~~~v~~~~~-------------------~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD 192 (302)
..++.+++.+... +......++.+..||+||+||++||+||+.+|++||||| |++++|
T Consensus 128 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~lLiLDE---Pt~gLD 204 (340)
T PRK13536 128 EFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILDE---PTTGLD 204 (340)
T ss_pred CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEEC---CCCCCC
Confidence 2333443322110 111112356677899999999999999999999999999 999999
Q ss_pred HHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCc
Q psy2071 193 ILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGR 237 (302)
Q Consensus 193 ~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~ 237 (302)
+.. ..+.+++.++.+.|.||+++||+++++.++||++++|+ .|+
T Consensus 205 ~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~-~G~ 249 (340)
T PRK13536 205 PHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLE-AGR 249 (340)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEE-CCE
Confidence 988 78889888776668999999999999999999999998 554
No 38
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=6.9e-33 Score=226.44 Aligned_cols=167 Identities=17% Similarity=0.157 Sum_probs=136.6
Q ss_pred hHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhH--HHHHHHhhhhhccccccceee
Q psy2071 64 FEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAA--MSVAQRVSEEMDCQLGQEVGY 141 (302)
Q Consensus 64 ~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~~v~~ 141 (302)
..++++++..|.+||.++++||+|||||||+++++|+..|..|.+.+++......++ .-+.+.-+..++.++.+|+.|
T Consensus 18 ~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPgaergvVFQ~~~LlPWl~~~dNvaf 97 (259)
T COG4525 18 RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAERGVVFQNEALLPWLNVIDNVAF 97 (259)
T ss_pred hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCccceeEeccCccchhhHHHHHHHH
Confidence 346899999999999999999999999999999999999999999998864322111 112333344567778888888
Q ss_pred eeeecCCC-------------------CccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHH
Q psy2071 142 SIRFEDCS-------------------SPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEV 201 (302)
Q Consensus 142 ~~~~~~~~-------------------~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~l 201 (302)
.++..... ..+..+..|||||+||+.|||||+.+|++|+||| |+.++|... +.+.++
T Consensus 98 gL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~~LlLDE---PfgAlDa~tRe~mQel 174 (259)
T COG4525 98 GLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDE---PFGALDALTREQMQEL 174 (259)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcCcceEeecC---chhhHHHHHHHHHHHH
Confidence 87654433 2345667799999999999999999999999999 999999888 667776
Q ss_pred HH-HcCCCcEEEEEEecCHHHHHhhccCCCeee
Q psy2071 202 IK-QRADLKLVIMSATLDAGKFQQYFDNAPLMN 233 (302)
Q Consensus 202 l~-~~~~~~~~ii~~thd~~~~~~~~d~~~~l~ 233 (302)
+- .+...|+.++++|||++++.-+++++++|+
T Consensus 175 Lldlw~~tgk~~lliTH~ieEAlflatrLvvls 207 (259)
T COG4525 175 LLDLWQETGKQVLLITHDIEEALFLATRLVVLS 207 (259)
T ss_pred HHHHHHHhCCeEEEEeccHHHHHhhhheeEEec
Confidence 65 455668889999999999999999999998
No 39
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.97 E-value=8.4e-34 Score=232.60 Aligned_cols=182 Identities=15% Similarity=0.153 Sum_probs=145.6
Q ss_pred hhHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhh--------HHHHHHHhhhhhccc
Q psy2071 63 VFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVA--------AMSVAQRVSEEMDCQ 134 (302)
Q Consensus 63 ~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~--------~~~~~~~~~~~~~~~ 134 (302)
-..+.+++++.+++||+++|+||||+||||.+.+++|+.+|++|.+.+++.+..... ..++.|.-+.+...+
T Consensus 16 kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGigYLpQE~SIFr~Lt 95 (243)
T COG1137 16 KRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGIGYLPQEASIFRKLT 95 (243)
T ss_pred CeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCcccccccchHhhcCc
Confidence 344678999999999999999999999999999999999999999999998754322 223333333345567
Q ss_pred cccceeeeeeecCCC---------------------CccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHH
Q psy2071 135 LGQEVGYSIRFEDCS---------------------SPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDI 193 (302)
Q Consensus 135 ~~~~v~~~~~~~~~~---------------------~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~ 193 (302)
+.+|+...+.+.... ..+.....||||+++|+.|||||+.+|++++||| |+++.||
T Consensus 96 V~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~~P~fiLLDE---PFAGVDP 172 (243)
T COG1137 96 VEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKFILLDE---PFAGVDP 172 (243)
T ss_pred HHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHhcCCCEEEecC---CccCCCc
Confidence 777776555433211 1123344599999999999999999999999999 9999999
Q ss_pred HH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCc----CCccceeecCC
Q psy2071 194 LM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGR----THPVEIFYTPE 248 (302)
Q Consensus 194 ~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~----~~~~~~~~~~~ 248 (302)
.. ..+++++..+++.|+-|+++-|++.+...+|||+++++ .|. +.|.++..+|.
T Consensus 173 iaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~-~G~vla~G~p~ei~~n~~ 231 (243)
T COG1137 173 IAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIIS-DGKVLAEGSPEEIVNNED 231 (243)
T ss_pred hhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEe-cCeEEecCCHHHHhcChh
Confidence 88 88999999988889999999999999999999999998 654 35655555443
No 40
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.97 E-value=3.6e-34 Score=263.34 Aligned_cols=183 Identities=20% Similarity=0.233 Sum_probs=140.7
Q ss_pred CChhHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhh-----hHHHHHHHhhhhhcccc
Q psy2071 61 LPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRV-----AAMSVAQRVSEEMDCQL 135 (302)
Q Consensus 61 lp~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~-----~~~~~~~~~~~~~~~~~ 135 (302)
++...+++++++.+++|++++|+||||||||||+++|+|+.+|++|++.++|...... ....+.+....++..++
T Consensus 14 ~~~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~v~Q~~~lfp~~tv 93 (353)
T TIGR03265 14 FGAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGIVFQSYALFPNLTV 93 (353)
T ss_pred eCCeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCcH
Confidence 3434457889999999999999999999999999999999999999999998653221 11122233333445677
Q ss_pred ccceeeeeeecC-------------------CCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-
Q psy2071 136 GQEVGYSIRFED-------------------CSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM- 195 (302)
Q Consensus 136 ~~~v~~~~~~~~-------------------~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~- 195 (302)
.+|+.|..+... ....++.+..|||||+||++|||||+.+|+++|||| |++++|...
T Consensus 94 ~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~llLLDE---P~s~LD~~~r 170 (353)
T TIGR03265 94 ADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDE---PLSALDARVR 170 (353)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC---CcccCCHHHH
Confidence 777776543211 012345667799999999999999999999999999 999999877
Q ss_pred HHHHHHHHHc-CCCcEEEEEEecCHHHHHhhccCCCeeeecCcC----CccceeecC
Q psy2071 196 GVLKEVIKQR-ADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT----HPVEIFYTP 247 (302)
Q Consensus 196 ~~l~~ll~~~-~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~----~~~~~~~~~ 247 (302)
..+.+.+++. .+.+.|+|++|||.+++..+||++++|+ .|+. .|.+++..|
T Consensus 171 ~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~-~G~i~~~g~~~~~~~~p 226 (353)
T TIGR03265 171 EHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMN-HGVIEQVGTPQEIYRHP 226 (353)
T ss_pred HHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEE-CCEEEEEcCHHHHHhCC
Confidence 6777777654 3458999999999999999999999998 6653 455555444
No 41
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.97 E-value=5.1e-34 Score=262.79 Aligned_cols=179 Identities=20% Similarity=0.263 Sum_probs=138.4
Q ss_pred HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccC--CCEEEeecCchhhh-----HHHHHHHhhhhhcccccc
Q psy2071 65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSV--GAKAVACTQPRRVA-----AMSVAQRVSEEMDCQLGQ 137 (302)
Q Consensus 65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~--G~~~i~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ 137 (302)
.+++++++.|++|++++|+||||||||||+++|+|+++|++ |++.++|....... ...+.+....++..++.+
T Consensus 19 ~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ig~vfQ~~~l~p~~tv~e 98 (362)
T TIGR03258 19 TVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGLALLFQNYALFPHLKVED 98 (362)
T ss_pred EEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCCEEEEECCcccCCCCcHHH
Confidence 35788999999999999999999999999999999999999 99999886542211 111222223334557777
Q ss_pred ceeeeeeecC-------------------CCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HH
Q psy2071 138 EVGYSIRFED-------------------CSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GV 197 (302)
Q Consensus 138 ~v~~~~~~~~-------------------~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~ 197 (302)
|+.|..+... ....++.+..|||||+||++|||||+.+|++||||| |++++|+.. ..
T Consensus 99 nl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~llLLDE---P~s~LD~~~r~~ 175 (362)
T TIGR03258 99 NVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDE---PLSALDANIRAN 175 (362)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC---ccccCCHHHHHH
Confidence 7766543211 012345667799999999999999999999999999 999999887 77
Q ss_pred HHHHHHHcCCC--cEEEEEEecCHHHHHhhccCCCeeeecCcC----CccceeecC
Q psy2071 198 LKEVIKQRADL--KLVIMSATLDAGKFQQYFDNAPLMNVPGRT----HPVEIFYTP 247 (302)
Q Consensus 198 l~~ll~~~~~~--~~~ii~~thd~~~~~~~~d~~~~l~i~g~~----~~~~~~~~~ 247 (302)
+.+.+.+..+. +.|++++|||.+++..+||++++|+ .|+. .|.+++..|
T Consensus 176 l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~-~G~i~~~g~~~~~~~~p 230 (362)
T TIGR03258 176 MREEIAALHEELPELTILCVTHDQDDALTLADKAGIMK-DGRLAAHGEPQALYDAP 230 (362)
T ss_pred HHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEE-CCEEEEEcCHHHHHhCc
Confidence 77777765443 7899999999999999999999998 5553 555665444
No 42
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.97 E-value=2.6e-33 Score=240.82 Aligned_cols=167 Identities=17% Similarity=0.177 Sum_probs=126.2
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHH---HHHhhh-----hhcccccc
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSV---AQRVSE-----EMDCQLGQ 137 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~---~~~~~~-----~~~~~~~~ 137 (302)
+++++++.|++|++++|+||||||||||+++|+|+++|++|++.++|........... ..++.+ ....++.+
T Consensus 16 il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~t~~~ 95 (211)
T cd03225 16 ALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEE 95 (211)
T ss_pred eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEEecChhhhcCCCcHHH
Confidence 5788999999999999999999999999999999999999999998864321110000 011111 11234444
Q ss_pred ceeeeee-------------------ecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HH
Q psy2071 138 EVGYSIR-------------------FEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GV 197 (302)
Q Consensus 138 ~v~~~~~-------------------~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~ 197 (302)
++.+... +......++.+..||+||+||++||+||+.+|++||||| |++++|+.. ..
T Consensus 96 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDE---Pt~~LD~~~~~~ 172 (211)
T cd03225 96 EVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDE---PTAGLDPAGRRE 172 (211)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcC---CcccCCHHHHHH
Confidence 4332110 000011245567899999999999999999999999999 999999887 77
Q ss_pred HHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecC
Q psy2071 198 LKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPG 236 (302)
Q Consensus 198 l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g 236 (302)
+.+++....+.+.++|++|||++++..+||++++|+ .|
T Consensus 173 ~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~-~G 210 (211)
T cd03225 173 LLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLE-DG 210 (211)
T ss_pred HHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEe-CC
Confidence 888887765558899999999999999999999997 54
No 43
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.97 E-value=5.8e-34 Score=263.39 Aligned_cols=184 Identities=19% Similarity=0.234 Sum_probs=141.3
Q ss_pred CChhHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhh-----hHHHHHHHhhhhhcccc
Q psy2071 61 LPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRV-----AAMSVAQRVSEEMDCQL 135 (302)
Q Consensus 61 lp~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~-----~~~~~~~~~~~~~~~~~ 135 (302)
++...+++++++.|++|++++|+||||||||||+++|+|+++|++|++.+.|...... ....+.+....++..++
T Consensus 24 ~~~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv 103 (375)
T PRK09452 24 FDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHVNTVFQSYALFPHMTV 103 (375)
T ss_pred ECCeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEecCcccCCCCCH
Confidence 3333457889999999999999999999999999999999999999999998754221 11112233333445677
Q ss_pred ccceeeeeeecCC-------------------CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-
Q psy2071 136 GQEVGYSIRFEDC-------------------SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM- 195 (302)
Q Consensus 136 ~~~v~~~~~~~~~-------------------~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~- 195 (302)
.+|+.|..+.... ...++.+..|||||+||++|||||+.+|++||||| |++++|...
T Consensus 104 ~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~llLLDE---P~s~LD~~~r 180 (375)
T PRK09452 104 FENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDE---SLSALDYKLR 180 (375)
T ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC---CCCcCCHHHH
Confidence 7777765432110 11244566799999999999999999999999999 999999887
Q ss_pred HHHHHHHHHcC-CCcEEEEEEecCHHHHHhhccCCCeeeecCcC----CccceeecCC
Q psy2071 196 GVLKEVIKQRA-DLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT----HPVEIFYTPE 248 (302)
Q Consensus 196 ~~l~~ll~~~~-~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~----~~~~~~~~~~ 248 (302)
..+.+.++... +.+.|+|++|||.+++..+||++++|+ .|+. .|.+++..|.
T Consensus 181 ~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~-~G~i~~~g~~~~i~~~p~ 237 (375)
T PRK09452 181 KQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMR-DGRIEQDGTPREIYEEPK 237 (375)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEE-CCEEEEEcCHHHHHhCcc
Confidence 67777777654 458999999999999999999999998 6653 5555555443
No 44
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=1.3e-33 Score=243.10 Aligned_cols=168 Identities=18% Similarity=0.197 Sum_probs=126.8
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhH-----HHHHHHhhhhhcccccccee
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAA-----MSVAQRVSEEMDCQLGQEVG 140 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~v~ 140 (302)
+++++++.|++|++++|+|+||||||||+++|+|+++|++|++.+.|.+...... ..+.+........++.+++.
T Consensus 15 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~ 94 (213)
T cd03259 15 ALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMVFQDYALFPHLTVAENIA 94 (213)
T ss_pred eecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEEcCchhhccCCcHHHHHH
Confidence 5789999999999999999999999999999999999999999998865321110 00111111111233344432
Q ss_pred eeee-------------------ecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHH
Q psy2071 141 YSIR-------------------FEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKE 200 (302)
Q Consensus 141 ~~~~-------------------~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ 200 (302)
+... +......++.+..||+||+||++||+||+.+|++||||| ||+++|+.. ..+.+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDE---Pt~~LD~~~~~~l~~ 171 (213)
T cd03259 95 FGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDE---PLSALDAKLREELRE 171 (213)
T ss_pred hHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcC---CcccCCHHHHHHHHH
Confidence 2110 000111245567799999999999999999999999999 999999887 77888
Q ss_pred HHHHcCC-CcEEEEEEecCHHHHHhhccCCCeeeecCc
Q psy2071 201 VIKQRAD-LKLVIMSATLDAGKFQQYFDNAPLMNVPGR 237 (302)
Q Consensus 201 ll~~~~~-~~~~ii~~thd~~~~~~~~d~~~~l~i~g~ 237 (302)
++....+ .+.||+++|||.+++.++||++++|+ .|+
T Consensus 172 ~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~-~G~ 208 (213)
T cd03259 172 ELKELQRELGITTIYVTHDQEEALALADRIAVMN-EGR 208 (213)
T ss_pred HHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEE-CCE
Confidence 8877544 47899999999999999999999998 665
No 45
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.97 E-value=3.7e-33 Score=240.35 Aligned_cols=167 Identities=16% Similarity=0.181 Sum_probs=126.9
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhH------H----HHHHHhhhhhcccc
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAA------M----SVAQRVSEEMDCQL 135 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~------~----~~~~~~~~~~~~~~ 135 (302)
+++++++.|++|++++|+|+||||||||+++|+|+++|++|++.+.|.+...... . .+.+........++
T Consensus 17 il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 96 (214)
T TIGR02673 17 ALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTV 96 (214)
T ss_pred eecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEecChhhccCCcH
Confidence 5789999999999999999999999999999999999999999998865432110 0 00111111112344
Q ss_pred ccceeeeee-------------------ecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-
Q psy2071 136 GQEVGYSIR-------------------FEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM- 195 (302)
Q Consensus 136 ~~~v~~~~~-------------------~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~- 195 (302)
.+++.+... +......++.+..||+||+||++||+||+.+|++||||| |++++|+..
T Consensus 97 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~lllLDE---Pt~~LD~~~~ 173 (214)
T TIGR02673 97 YENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADE---PTGNLDPDLS 173 (214)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeC---CcccCCHHHH
Confidence 444332210 000011234567799999999999999999999999999 999999887
Q ss_pred HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecC
Q psy2071 196 GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPG 236 (302)
Q Consensus 196 ~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g 236 (302)
..+.++++...+.+.|++++||+++++..+||++++|+ .|
T Consensus 174 ~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~-~G 213 (214)
T TIGR02673 174 ERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILD-DG 213 (214)
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEec-CC
Confidence 77888888765557899999999999999999999987 44
No 46
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.97 E-value=1.2e-33 Score=259.77 Aligned_cols=179 Identities=19% Similarity=0.213 Sum_probs=137.6
Q ss_pred HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhh-----HHHHHHHhhhhhccccccce
Q psy2071 65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVA-----AMSVAQRVSEEMDCQLGQEV 139 (302)
Q Consensus 65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~v 139 (302)
.+++++++.|++|++++|+||||||||||+++|+|+++|++|++.++|.+..... ...+.+.....+..++.+++
T Consensus 16 ~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~v~Q~~~l~p~~tv~eni 95 (353)
T PRK10851 16 QVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFVFQHYALFRHMTVFDNI 95 (353)
T ss_pred EEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEEEecCcccCCCCcHHHHH
Confidence 3578899999999999999999999999999999999999999999886542211 11112222233345677777
Q ss_pred eeeeeec----C-------------------CCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-
Q psy2071 140 GYSIRFE----D-------------------CSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM- 195 (302)
Q Consensus 140 ~~~~~~~----~-------------------~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~- 195 (302)
.|..+.. . ....++.+..|||||+||++|||||+.+|++||||| |++++|+..
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~~P~llLLDE---P~s~LD~~~r 172 (353)
T PRK10851 96 AFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLDE---PFGALDAQVR 172 (353)
T ss_pred HhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC---CCccCCHHHH
Confidence 6654320 0 011244566799999999999999999999999999 999999887
Q ss_pred HHHHHHHHHcC-CCcEEEEEEecCHHHHHhhccCCCeeeecCcC----CccceeecC
Q psy2071 196 GVLKEVIKQRA-DLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT----HPVEIFYTP 247 (302)
Q Consensus 196 ~~l~~ll~~~~-~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~----~~~~~~~~~ 247 (302)
..+.+++.+.. +.+.|+|++|||.+++..+||++++|+ .|+. .|.+++..|
T Consensus 173 ~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~-~G~i~~~g~~~~i~~~p 228 (353)
T PRK10851 173 KELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMS-QGNIEQAGTPDQVWREP 228 (353)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEE-CCEEEEEcCHHHHHhCc
Confidence 67777777654 348999999999999999999999998 6653 555555444
No 47
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=2.8e-33 Score=244.51 Aligned_cols=169 Identities=16% Similarity=0.177 Sum_probs=128.6
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhH------H----HHHHHhhhhhcccc
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAA------M----SVAQRVSEEMDCQL 135 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~------~----~~~~~~~~~~~~~~ 135 (302)
+++++++.|++|++++|+||||||||||+++|+|+++|++|++.++|.+...... . .+.+........++
T Consensus 15 ~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv 94 (235)
T cd03261 15 VLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTV 94 (235)
T ss_pred EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcceEEEccCcccCCCCcH
Confidence 5788999999999999999999999999999999999999999998865322110 0 01111111122355
Q ss_pred ccceeeeeee--------------------cCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH
Q psy2071 136 GQEVGYSIRF--------------------EDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM 195 (302)
Q Consensus 136 ~~~v~~~~~~--------------------~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~ 195 (302)
.+++.+.... ......++.+..|||||+||++||+||+.+|++||||| |++++|+..
T Consensus 95 ~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDE---Pt~~LD~~~ 171 (235)
T cd03261 95 FENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDE---PTAGLDPIA 171 (235)
T ss_pred HHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecC---CcccCCHHH
Confidence 5554332110 00011245567799999999999999999999999999 999999887
Q ss_pred -HHHHHHHHHcCC-CcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 196 -GVLKEVIKQRAD-LKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 196 -~~l~~ll~~~~~-~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
..+.++++...+ .+.||+++|||++++..+||++++|+ .|+.
T Consensus 172 ~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~-~G~i 215 (235)
T cd03261 172 SGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLY-DGKI 215 (235)
T ss_pred HHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEE-CCeE
Confidence 778888876654 47899999999999999999999998 6654
No 48
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.97 E-value=3.4e-33 Score=241.25 Aligned_cols=167 Identities=17% Similarity=0.136 Sum_probs=126.5
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHH-------HHHHHhh----hhhccc
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAM-------SVAQRVS----EEMDCQ 134 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~-------~~~~~~~----~~~~~~ 134 (302)
+++++++.|++|++++|+||||||||||+++|+|+++|++|++.++|.+....... .....+. .....+
T Consensus 19 il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 98 (218)
T cd03255 19 ALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLT 98 (218)
T ss_pred EEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHHhhcEEEEeeccccCCCCc
Confidence 57889999999999999999999999999999999999999999988654321100 0001111 112234
Q ss_pred cccceeeeeeec-------------------CCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH
Q psy2071 135 LGQEVGYSIRFE-------------------DCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM 195 (302)
Q Consensus 135 ~~~~v~~~~~~~-------------------~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~ 195 (302)
+.+++.+...+. .....++.+..||+||+||++||+||+.+|++||||| |++++|+..
T Consensus 99 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDE---P~~~LD~~~ 175 (218)
T cd03255 99 ALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADE---PTGNLDSET 175 (218)
T ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHccCCCEEEEcC---CcccCCHHH
Confidence 444443321110 0011244567799999999999999999999999999 999999887
Q ss_pred -HHHHHHHHHcCC-CcEEEEEEecCHHHHHhhccCCCeeeecCc
Q psy2071 196 -GVLKEVIKQRAD-LKLVIMSATLDAGKFQQYFDNAPLMNVPGR 237 (302)
Q Consensus 196 -~~l~~ll~~~~~-~~~~ii~~thd~~~~~~~~d~~~~l~i~g~ 237 (302)
..+.+++.+..+ .+.|||++||+.+++. +||++++|+ .|+
T Consensus 176 ~~~l~~~l~~~~~~~~~tii~~sH~~~~~~-~~d~v~~l~-~G~ 217 (218)
T cd03255 176 GKEVMELLRELNKEAGTTIVVVTHDPELAE-YADRIIELR-DGK 217 (218)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEECCHHHHh-hhcEEEEee-CCc
Confidence 778888887654 5889999999999987 999999997 554
No 49
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.97 E-value=2.8e-33 Score=241.01 Aligned_cols=165 Identities=16% Similarity=0.213 Sum_probs=125.5
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchh----hhHHHHHHHhhhhhccccccceee
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRR----VAAMSVAQRVSEEMDCQLGQEVGY 141 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~----~~~~~~~~~~~~~~~~~~~~~v~~ 141 (302)
+.+++++.|++|++++|+||||||||||+++|+|+++|++|++.++|..... ++...........+..++.+++.+
T Consensus 14 ~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~e~l~~ 93 (213)
T cd03235 14 VLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQRRSIDRDFPISVRDVVLM 93 (213)
T ss_pred eeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHHHHhheEEeccccccccCCCCcHHHHHHh
Confidence 5789999999999999999999999999999999999999999998865421 111111100000112344444432
Q ss_pred eeee-----------------------cCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HH
Q psy2071 142 SIRF-----------------------EDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GV 197 (302)
Q Consensus 142 ~~~~-----------------------~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~ 197 (302)
.... ......++.+..||+||+||++||+||+.+|++||||| ||+++|+.. ..
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDE---Pt~~LD~~~~~~ 170 (213)
T cd03235 94 GLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDE---PFAGVDPKTQED 170 (213)
T ss_pred ccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC---CcccCCHHHHHH
Confidence 2110 00001234567799999999999999999999999999 999999887 77
Q ss_pred HHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeee
Q psy2071 198 LKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMN 233 (302)
Q Consensus 198 l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~ 233 (302)
+.+++.+..+.+.|+|++|||.+++.++||++++|+
T Consensus 171 l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~ 206 (213)
T cd03235 171 IYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLN 206 (213)
T ss_pred HHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEc
Confidence 888888765568899999999999999999999997
No 50
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.97 E-value=2.7e-33 Score=253.38 Aligned_cols=169 Identities=18% Similarity=0.168 Sum_probs=128.7
Q ss_pred HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhH--H----HHHHHhhhhhccccccc
Q psy2071 65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAA--M----SVAQRVSEEMDCQLGQE 138 (302)
Q Consensus 65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~--~----~~~~~~~~~~~~~~~~~ 138 (302)
.+++++++.|++|++++|+||||||||||+++|+|+++|++|++.+.|.+...... . .+.+........++.++
T Consensus 18 ~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~ 97 (303)
T TIGR01288 18 VVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAIGVVPQFDNLDPEFTVREN 97 (303)
T ss_pred EEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcEEEEeccccCCcCCcHHHH
Confidence 36899999999999999999999999999999999999999999998865321110 0 00111111112344444
Q ss_pred eeeeee-------------------ecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHH
Q psy2071 139 VGYSIR-------------------FEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVL 198 (302)
Q Consensus 139 v~~~~~-------------------~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l 198 (302)
+.+... +......++.+..||+||+||++||+||+.+|++||||| ||+++|+.. ..+
T Consensus 98 l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDE---Pt~gLD~~~~~~l 174 (303)
T TIGR01288 98 LLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLILDE---PTTGLDPHARHLI 174 (303)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeC---CCcCCCHHHHHHH
Confidence 321100 000112345667899999999999999999999999999 999999888 778
Q ss_pred HHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCc
Q psy2071 199 KEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGR 237 (302)
Q Consensus 199 ~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~ 237 (302)
.+++.+..+.|.||+++||+++++.++||++++|+ .|+
T Consensus 175 ~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~-~G~ 212 (303)
T TIGR01288 175 WERLRSLLARGKTILLTTHFMEEAERLCDRLCVLE-SGR 212 (303)
T ss_pred HHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEE-CCE
Confidence 88888765568999999999999999999999998 554
No 51
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.97 E-value=2.6e-32 Score=225.28 Aligned_cols=144 Identities=16% Similarity=0.179 Sum_probs=121.4
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhhccccccceeeeeee
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRF 145 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 145 (302)
+.+++++.|++|++++|+|+||||||||+++|+|+++|++|++.+.+.+........ .....++|..+
T Consensus 15 vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~-----------~~~~~i~~~~q- 82 (163)
T cd03216 15 ALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRD-----------ARRAGIAMVYQ- 82 (163)
T ss_pred EEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHH-----------HHhcCeEEEEe-
Confidence 578899999999999999999999999999999999999999999886543211100 01123455433
Q ss_pred cCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHh
Q psy2071 146 EDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQ 224 (302)
Q Consensus 146 ~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~ 224 (302)
||+||+||+++|+|++.+|++||||| |++++|+.. ..+.+++++..+.+.|++++||+.+.+.+
T Consensus 83 ------------LS~G~~qrl~laral~~~p~illlDE---P~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~ 147 (163)
T cd03216 83 ------------LSVGERQMVEIARALARNARLLILDE---PTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFE 147 (163)
T ss_pred ------------cCHHHHHHHHHHHHHhcCCCEEEEEC---CCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 99999999999999999999999999 999999887 78888888765558899999999999999
Q ss_pred hccCCCeeeecCc
Q psy2071 225 YFDNAPLMNVPGR 237 (302)
Q Consensus 225 ~~d~~~~l~i~g~ 237 (302)
+||++++|+ .|+
T Consensus 148 ~~d~~~~l~-~g~ 159 (163)
T cd03216 148 IADRVTVLR-DGR 159 (163)
T ss_pred hCCEEEEEE-CCE
Confidence 999999998 665
No 52
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=8.1e-33 Score=239.30 Aligned_cols=170 Identities=21% Similarity=0.214 Sum_probs=127.1
Q ss_pred HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhh--HH----HHHHHhhhhhccccccc
Q psy2071 65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVA--AM----SVAQRVSEEMDCQLGQE 138 (302)
Q Consensus 65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~--~~----~~~~~~~~~~~~~~~~~ 138 (302)
.+++++++.+++|++++|+|+||||||||+++|+|+++|++|++.+.|....... .. .+.+........++.++
T Consensus 14 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~ 93 (220)
T cd03265 14 EAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIVFQDLSVDDELTGWEN 93 (220)
T ss_pred EeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEEecCCccccccCcHHHH
Confidence 3578999999999999999999999999999999999999999999886432110 00 00111111112233333
Q ss_pred eeeeee-------------------ecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHH
Q psy2071 139 VGYSIR-------------------FEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVL 198 (302)
Q Consensus 139 v~~~~~-------------------~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l 198 (302)
+.+... +......++.+..||+||+||++||+|++.+|+++|||| |++++|+.. ..+
T Consensus 94 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~llllDE---Pt~~LD~~~~~~l 170 (220)
T cd03265 94 LYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDE---PTIGLDPQTRAHV 170 (220)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC---CccCCCHHHHHHH
Confidence 322110 000011245567799999999999999999999999999 999999887 778
Q ss_pred HHHHHHcCCC-cEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 199 KEVIKQRADL-KLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 199 ~~ll~~~~~~-~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
.+++....+. +.+++++||+.+++..+||++++|+ .|+.
T Consensus 171 ~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~-~G~i 210 (220)
T cd03265 171 WEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIID-HGRI 210 (220)
T ss_pred HHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEe-CCEE
Confidence 8888765543 7899999999999999999999998 6654
No 53
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=2.2e-33 Score=259.93 Aligned_cols=186 Identities=15% Similarity=0.183 Sum_probs=140.3
Q ss_pred cCCChhHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhh-----hHHHHHHHhhhhhcc
Q psy2071 59 ITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRV-----AAMSVAQRVSEEMDC 133 (302)
Q Consensus 59 ~~lp~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~-----~~~~~~~~~~~~~~~ 133 (302)
+.++...+++++++.|++|++++|+||||||||||+++|+|+.+|+.|++.++|...... ....+.+....++..
T Consensus 27 ~~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~vfQ~~~lfp~l 106 (377)
T PRK11607 27 KSFDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPINMMFQSYALFPHM 106 (377)
T ss_pred EEECCEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCCccCCCC
Confidence 333333457889999999999999999999999999999999999999999988653221 111222333334456
Q ss_pred ccccceeeeeeecCC-------------------CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHH
Q psy2071 134 QLGQEVGYSIRFEDC-------------------SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDIL 194 (302)
Q Consensus 134 ~~~~~v~~~~~~~~~-------------------~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~ 194 (302)
++.+|+.|..+.... ...++.+..|||||+||++|||||+.+|++||||| |++++|..
T Consensus 107 tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~lLLLDE---P~s~LD~~ 183 (377)
T PRK11607 107 TVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDE---PMGALDKK 183 (377)
T ss_pred CHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC---CcccCCHH
Confidence 777777765432110 11244566799999999999999999999999999 99999987
Q ss_pred H-HHHHHHHHHc-CCCcEEEEEEecCHHHHHhhccCCCeeeecCc----CCccceeecCC
Q psy2071 195 M-GVLKEVIKQR-ADLKLVIMSATLDAGKFQQYFDNAPLMNVPGR----THPVEIFYTPE 248 (302)
Q Consensus 195 ~-~~l~~ll~~~-~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~----~~~~~~~~~~~ 248 (302)
. ..+.+.+.+. ++.+.|+|++|||.+++..+||++++|+ .|+ +.|.+++..|.
T Consensus 184 ~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~-~G~i~~~g~~~~~~~~p~ 242 (377)
T PRK11607 184 LRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMN-RGKFVQIGEPEEIYEHPT 242 (377)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEe-CCEEEEEcCHHHHHhCCc
Confidence 7 5666555543 4458999999999999999999999998 555 35666655443
No 54
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.97 E-value=2.7e-33 Score=259.21 Aligned_cols=179 Identities=17% Similarity=0.218 Sum_probs=134.6
Q ss_pred HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhh-----HHHHHHHhhhhhccccccce
Q psy2071 65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVA-----AMSVAQRVSEEMDCQLGQEV 139 (302)
Q Consensus 65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~v 139 (302)
.+++++++.|++|++++|+||||||||||+++|+|+++|++|++.++|....... ...+.+........++.+++
T Consensus 17 ~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~v~Q~~~l~~~~tv~eni 96 (369)
T PRK11000 17 VISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMVFQSYALYPHLSVAENM 96 (369)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEEEeCCcccCCCCCHHHHH
Confidence 3578899999999999999999999999999999999999999999886532211 01111221222344666666
Q ss_pred eeeeeecC-------------------CCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHH
Q psy2071 140 GYSIRFED-------------------CSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLK 199 (302)
Q Consensus 140 ~~~~~~~~-------------------~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~ 199 (302)
.+...... ....++.+..|||||+||++|||||+.+|++||||| |++++|+.. ..+.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLDE---Pts~LD~~~~~~l~ 173 (369)
T PRK11000 97 SFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDE---PLSNLDAALRVQMR 173 (369)
T ss_pred HhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC---CcccCCHHHHHHHH
Confidence 54332110 011245567799999999999999999999999999 999999887 6777
Q ss_pred HHHHHcC-CCcEEEEEEecCHHHHHhhccCCCeeeecCcC----CccceeecC
Q psy2071 200 EVIKQRA-DLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT----HPVEIFYTP 247 (302)
Q Consensus 200 ~ll~~~~-~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~----~~~~~~~~~ 247 (302)
+++++.. +.+.|+|++|||.+++..+||++++|+ .|+. .|.+++..|
T Consensus 174 ~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~-~G~i~~~g~~~~i~~~p 225 (369)
T PRK11000 174 IEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLD-AGRVAQVGKPLELYHYP 225 (369)
T ss_pred HHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEE-CCEEEEEcCHHHHHhCc
Confidence 7777654 348899999999999999999999998 5543 454544433
No 55
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=1.6e-32 Score=244.95 Aligned_cols=169 Identities=17% Similarity=0.139 Sum_probs=130.1
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHH---HHHhh-----hhhcccccc
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSV---AQRVS-----EEMDCQLGQ 137 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~---~~~~~-----~~~~~~~~~ 137 (302)
+++++++.|++|++++|+|+||||||||+++|+|+++|++|++.+.|........... ...+. .....++.+
T Consensus 20 ~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e 99 (274)
T PRK13647 20 ALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWD 99 (274)
T ss_pred eeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEEEEecChhhhhccCcHHH
Confidence 6889999999999999999999999999999999999999999999865422111111 11111 112235555
Q ss_pred ceeeeeeec------------------C-CCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HH
Q psy2071 138 EVGYSIRFE------------------D-CSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GV 197 (302)
Q Consensus 138 ~v~~~~~~~------------------~-~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~ 197 (302)
++.+..... . ....++.+..||+||+||++||+||+.+|++||||| |++++|+.. ..
T Consensus 100 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDE---Pt~~LD~~~~~~ 176 (274)
T PRK13647 100 DVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDE---PMAYLDPRGQET 176 (274)
T ss_pred HHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEEC---CCcCCCHHHHHH
Confidence 554322110 0 011244567799999999999999999999999999 999999887 77
Q ss_pred HHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 198 LKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 198 l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
+.+++....+.+.||+++|||++.+.++||++++|+ .|+.
T Consensus 177 l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~-~G~i 216 (274)
T PRK13647 177 LMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLK-EGRV 216 (274)
T ss_pred HHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEE-CCEE
Confidence 888888765558999999999999999999999998 6664
No 56
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.97 E-value=8.1e-33 Score=232.03 Aligned_cols=160 Identities=17% Similarity=0.207 Sum_probs=124.3
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhhccccccceeeeeee
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRF 145 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 145 (302)
+++++++.+++|++++|+|+||||||||+++|+|+++|+.|++.++|.+............+...+. ..+.++.
T Consensus 14 ~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q--~l~~~gl---- 87 (180)
T cd03214 14 VLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYVPQ--ALELLGL---- 87 (180)
T ss_pred eEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHHHH--HHHHcCC----
Confidence 5788999999999999999999999999999999999999999998865432111111111111110 1111111
Q ss_pred cCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCC-cEEEEEEecCHHHHH
Q psy2071 146 EDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVIKQRADL-KLVIMSATLDAGKFQ 223 (302)
Q Consensus 146 ~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~-~~~ii~~thd~~~~~ 223 (302)
. ...++.+..||+||+||++|||+++.+|+++|||| |+.++|+.. ..+.+++....+. +.|++++||+.+.+.
T Consensus 88 ~--~~~~~~~~~LS~G~~qrl~laral~~~p~llllDE---P~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~ 162 (180)
T cd03214 88 A--HLADRPFNELSGGERQRVLLARALAQEPPILLLDE---PTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAA 162 (180)
T ss_pred H--hHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC---CccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 1 12235568899999999999999999999999999 999999877 7788888776544 789999999999999
Q ss_pred hhccCCCeeeecCc
Q psy2071 224 QYFDNAPLMNVPGR 237 (302)
Q Consensus 224 ~~~d~~~~l~i~g~ 237 (302)
++||++++|+ .|+
T Consensus 163 ~~~d~~~~l~-~g~ 175 (180)
T cd03214 163 RYADRVILLK-DGR 175 (180)
T ss_pred HhCCEEEEEE-CCE
Confidence 9999999998 665
No 57
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.97 E-value=9.6e-33 Score=240.65 Aligned_cols=170 Identities=16% Similarity=0.157 Sum_probs=128.5
Q ss_pred HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHH--------HHHHHhhhhhccccc
Q psy2071 65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAM--------SVAQRVSEEMDCQLG 136 (302)
Q Consensus 65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~--------~~~~~~~~~~~~~~~ 136 (302)
.+++++++.+++|++++|+|+||||||||+++|+|+++|++|++.++|......... .+.+........++.
T Consensus 14 ~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 93 (232)
T cd03218 14 KVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRKLTVE 93 (232)
T ss_pred EeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEEecCCccccccCcHH
Confidence 357899999999999999999999999999999999999999999988653211100 011111111123444
Q ss_pred cceeeeee-------------------ecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-H
Q psy2071 137 QEVGYSIR-------------------FEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-G 196 (302)
Q Consensus 137 ~~v~~~~~-------------------~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~ 196 (302)
+++.+... +......++.+..||+||+||++||+||+.+|++||||| |++++|+.. .
T Consensus 94 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDE---Pt~~LD~~~~~ 170 (232)
T cd03218 94 ENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDE---PFAGVDPIAVQ 170 (232)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecC---CcccCCHHHHH
Confidence 44332110 000011244567799999999999999999999999999 999999887 7
Q ss_pred HHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 197 VLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 197 ~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
.+.++++...+.+.|+|++||+++.+..+||++++|+ .|+.
T Consensus 171 ~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~-~G~i 211 (232)
T cd03218 171 DIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIY-EGKV 211 (232)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEE-CCeE
Confidence 7888887765568899999999999999999999998 6654
No 58
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.97 E-value=4.9e-33 Score=243.14 Aligned_cols=170 Identities=14% Similarity=0.101 Sum_probs=128.8
Q ss_pred HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHH--------HHHHHhhhhhccccc
Q psy2071 65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAM--------SVAQRVSEEMDCQLG 136 (302)
Q Consensus 65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~--------~~~~~~~~~~~~~~~ 136 (302)
.+++++++.|++|++++|+||||||||||+++|+|+++|++|++.+.|......... .+.+........++.
T Consensus 14 ~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~ 93 (236)
T cd03219 14 VALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPELTVL 93 (236)
T ss_pred EEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEEEecccccccCCCHH
Confidence 357899999999999999999999999999999999999999999988654321110 011111111223444
Q ss_pred cceeeeee-----------------------------ecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCC
Q psy2071 137 QEVGYSIR-----------------------------FEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHER 187 (302)
Q Consensus 137 ~~v~~~~~-----------------------------~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p 187 (302)
+++.+... +......++.+..||+||+||+++|+||+.+|++||||| |
T Consensus 94 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDE---P 170 (236)
T cd03219 94 ENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARALATDPKLLLLDE---P 170 (236)
T ss_pred HHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC---C
Confidence 44332110 000011244566799999999999999999999999999 9
Q ss_pred CcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 188 TLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 188 ~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
|+++|+.. ..+.+++.+..+.+.|+|++|||.+++..+||++++|+ .|+.
T Consensus 171 t~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~-~G~i 221 (236)
T cd03219 171 AAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLD-QGRV 221 (236)
T ss_pred cccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEe-CCEE
Confidence 99999887 77888887765567899999999999999999999998 6653
No 59
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.97 E-value=1.1e-32 Score=256.30 Aligned_cols=170 Identities=21% Similarity=0.224 Sum_probs=131.3
Q ss_pred hHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHH-------Hhhhhhccccc
Q psy2071 64 FEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQ-------RVSEEMDCQLG 136 (302)
Q Consensus 64 ~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~-------~~~~~~~~~~~ 136 (302)
..+++++++.|++|++++|+||||||||||+++|+|+++|++|++.+.|............. .....+..++.
T Consensus 16 ~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l~~~~tv~ 95 (402)
T PRK09536 16 TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVASVPQDTSLSFEFDVR 95 (402)
T ss_pred EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceEEEccCCCCCCCCCHH
Confidence 34678999999999999999999999999999999999999999999997654322111111 11112334555
Q ss_pred cceeeee-----eec------------------CCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHH
Q psy2071 137 QEVGYSI-----RFE------------------DCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDI 193 (302)
Q Consensus 137 ~~v~~~~-----~~~------------------~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~ 193 (302)
+++.+.. .+. .....++.+..||+||+||++|||||+.+|++||||| ||+++|+
T Consensus 96 e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~~P~iLLLDE---PtsgLD~ 172 (402)
T PRK09536 96 QVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDE---PTASLDI 172 (402)
T ss_pred HHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEEC---CcccCCH
Confidence 5543321 111 0011245567799999999999999999999999999 9999998
Q ss_pred HH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCc
Q psy2071 194 LM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGR 237 (302)
Q Consensus 194 ~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~ 237 (302)
.. ..+.++++++.+.+.||+++|||++++.++||++++|+ .|+
T Consensus 173 ~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~-~G~ 216 (402)
T PRK09536 173 NHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLA-DGR 216 (402)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEE-CCE
Confidence 87 67888888766568899999999999999999999998 554
No 60
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=5.5e-32 Score=225.57 Aligned_cols=155 Identities=19% Similarity=0.228 Sum_probs=123.7
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhhccccccceeeeeee
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRF 145 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 145 (302)
+++++++.+.+|++++|+|+||||||||+++|+|+++|++|++.++|....... . .....++|..+.
T Consensus 15 ~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~-~------------~~~~~i~~~~q~ 81 (173)
T cd03230 15 ALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEP-E------------EVKRRIGYLPEE 81 (173)
T ss_pred eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccch-H------------hhhccEEEEecC
Confidence 578899999999999999999999999999999999999999999886543211 0 011234444432
Q ss_pred cCCCCccccccc--cCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHH
Q psy2071 146 EDCSSPKTVLKY--MTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKF 222 (302)
Q Consensus 146 ~~~~~~~~~~~~--lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~ 222 (302)
.......+...+ ||+||+||++||+||+.+|+++|||| |++++|... ..+.+++++..+.+.+++++||+.+++
T Consensus 82 ~~~~~~~tv~~~~~LS~G~~qrv~laral~~~p~illlDE---Pt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~ 158 (173)
T cd03230 82 PSLYENLTVRENLKLSGGMKQRLALAQALLHDPELLILDE---PTSGLDPESRREFWELLRELKKEGKTILLSSHILEEA 158 (173)
T ss_pred CccccCCcHHHHhhcCHHHHHHHHHHHHHHcCCCEEEEeC---CccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHH
Confidence 221111222222 99999999999999999999999999 999999887 788888887655578999999999999
Q ss_pred HhhccCCCeeeecCc
Q psy2071 223 QQYFDNAPLMNVPGR 237 (302)
Q Consensus 223 ~~~~d~~~~l~i~g~ 237 (302)
..+||++++|+ .|+
T Consensus 159 ~~~~d~i~~l~-~g~ 172 (173)
T cd03230 159 ERLCDRVAILN-NGR 172 (173)
T ss_pred HHhCCEEEEEe-CCC
Confidence 99999999997 554
No 61
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.97 E-value=1.6e-32 Score=240.82 Aligned_cols=170 Identities=12% Similarity=0.103 Sum_probs=128.2
Q ss_pred HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhH------HHHHHHhhh----hhccc
Q psy2071 65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAA------MSVAQRVSE----EMDCQ 134 (302)
Q Consensus 65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~------~~~~~~~~~----~~~~~ 134 (302)
.+++++++.|++|++++|+||||||||||+++|+|+++|++|++.++|.+...... ......+.+ ....+
T Consensus 16 ~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 95 (243)
T TIGR02315 16 QALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLT 95 (243)
T ss_pred ceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCccccccc
Confidence 35789999999999999999999999999999999999999999998865432110 000111111 12234
Q ss_pred cccceeeeee---------------------------ecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCC
Q psy2071 135 LGQEVGYSIR---------------------------FEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHER 187 (302)
Q Consensus 135 ~~~~v~~~~~---------------------------~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p 187 (302)
+.+++.+... +......++.+..||+||+||++||+||+.+|++||||| |
T Consensus 96 v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDE---P 172 (243)
T TIGR02315 96 VLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARALAQQPDLILADE---P 172 (243)
T ss_pred HHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC---C
Confidence 5555432210 000001234556799999999999999999999999999 9
Q ss_pred CcchHHHH-HHHHHHHHHcC-CCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 188 TLATDILM-GVLKEVIKQRA-DLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 188 ~~~lD~~~-~~l~~ll~~~~-~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
++++|+.. ..+.+++.+.. +.+.|+|++||+.+.+.++||++++|+ .|+.
T Consensus 173 t~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~-~G~i 224 (243)
T TIGR02315 173 IASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLK-AGEI 224 (243)
T ss_pred cccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEE-CCEE
Confidence 99999887 77888887654 347899999999999999999999998 6653
No 62
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=2.3e-32 Score=228.95 Aligned_cols=155 Identities=17% Similarity=0.219 Sum_probs=120.8
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhh--HHHHHHHhhhhhccccccceeeee
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVA--AMSVAQRVSEEMDCQLGQEVGYSI 143 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~ 143 (302)
+.+++++.+++|++++|+|+||||||||+++|+|+++|++|++.+.|.+..... ... ....++|..
T Consensus 15 ~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~------------~~~~i~~~~ 82 (178)
T cd03229 15 VLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPP------------LRRRIGMVF 82 (178)
T ss_pred EEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHH------------HhhcEEEEe
Confidence 578899999999999999999999999999999999999999999886543211 000 011233333
Q ss_pred eecCCCCcccc---ccc-cCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCC-cEEEEEEec
Q psy2071 144 RFEDCSSPKTV---LKY-MTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVIKQRADL-KLVIMSATL 217 (302)
Q Consensus 144 ~~~~~~~~~~~---~~~-lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~-~~~ii~~th 217 (302)
+........+. +.. ||+||+||+++|+||+.+|+++|||| |++++|+.. ..+.+++.+..+. +.|++++||
T Consensus 83 q~~~~~~~~t~~~~l~~~lS~G~~qr~~la~al~~~p~llilDE---P~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH 159 (178)
T cd03229 83 QDFALFPHLTVLENIALGLSGGQQQRVALARALAMDPDVLLLDE---PTSALDPITRREVRALLKSLQAQLGITVVLVTH 159 (178)
T ss_pred cCCccCCCCCHHHheeecCCHHHHHHHHHHHHHHCCCCEEEEeC---CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 22111111111 111 99999999999999999999999999 999999887 7888888876554 789999999
Q ss_pred CHHHHHhhccCCCeeeecC
Q psy2071 218 DAGKFQQYFDNAPLMNVPG 236 (302)
Q Consensus 218 d~~~~~~~~d~~~~l~i~g 236 (302)
+.+++..+||++++|+ .|
T Consensus 160 ~~~~~~~~~d~i~~l~-~g 177 (178)
T cd03229 160 DLDEAARLADRVVVLR-DG 177 (178)
T ss_pred CHHHHHHhcCEEEEEe-CC
Confidence 9999999999999987 44
No 63
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.97 E-value=4.8e-32 Score=225.94 Aligned_cols=154 Identities=15% Similarity=0.200 Sum_probs=120.6
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhhccccccceeeeeee
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRF 145 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 145 (302)
+.+++++.+++|++++|+||||||||||+++|+|+++|++|++.++|.+.......... ..++|..+.
T Consensus 17 ~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~------------~~i~~~~q~ 84 (173)
T cd03246 17 VLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELG------------DHVGYLPQD 84 (173)
T ss_pred ceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHH------------hheEEECCC
Confidence 57888999999999999999999999999999999999999999988654322111111 123333221
Q ss_pred cCCCCccccccc-cCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHH
Q psy2071 146 EDCSSPKTVLKY-MTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQ 223 (302)
Q Consensus 146 ~~~~~~~~~~~~-lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~ 223 (302)
.... ..+...+ ||+||+||++||+||+.+|+++|||| |+.++|+.. ..+.+++....+.+.|++++||+.+.+
T Consensus 85 ~~~~-~~tv~~~lLS~G~~qrv~la~al~~~p~~lllDE---Pt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~- 159 (173)
T cd03246 85 DELF-SGSIAENILSGGQRQRLGLARALYGNPRILVLDE---PNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETL- 159 (173)
T ss_pred Cccc-cCcHHHHCcCHHHHHHHHHHHHHhcCCCEEEEEC---CccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH-
Confidence 1111 1122222 99999999999999999999999999 999999887 778888877655688999999999988
Q ss_pred hhccCCCeeeecCc
Q psy2071 224 QYFDNAPLMNVPGR 237 (302)
Q Consensus 224 ~~~d~~~~l~i~g~ 237 (302)
.+||++++|+ .|+
T Consensus 160 ~~~d~v~~l~-~G~ 172 (173)
T cd03246 160 ASADRILVLE-DGR 172 (173)
T ss_pred HhCCEEEEEE-CCC
Confidence 5899999998 664
No 64
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.97 E-value=4.2e-32 Score=228.10 Aligned_cols=157 Identities=15% Similarity=0.193 Sum_probs=120.7
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhhccccccceeeeeee
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRF 145 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 145 (302)
+.+++++.+++|++++|+|+||||||||+++|+|+++|++|++.++|.+......... ....++|..+.
T Consensus 15 ~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~-----------~~~~i~~~~q~ 83 (182)
T cd03215 15 AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDA-----------IRAGIAYVPED 83 (182)
T ss_pred eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHH-----------HhCCeEEecCC
Confidence 5789999999999999999999999999999999999999999999865432210000 00112222211
Q ss_pred c-------CCCCcccc-c-cccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEE
Q psy2071 146 E-------DCSSPKTV-L-KYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVIKQRADLKLVIMSA 215 (302)
Q Consensus 146 ~-------~~~~~~~~-~-~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~ 215 (302)
. .....+.. . ..||+||+||++||+|++.+|++||||| |++++|+.. ..+.+++....+.+.|++++
T Consensus 84 ~~~~~~~~~~t~~e~l~~~~~LS~G~~qrl~la~al~~~p~llllDE---P~~~LD~~~~~~l~~~l~~~~~~~~tiii~ 160 (182)
T cd03215 84 RKREGLVLDLSVAENIALSSLLSGGNQQKVVLARWLARDPRVLILDE---PTRGVDVGAKAEIYRLIRELADAGKAVLLI 160 (182)
T ss_pred cccCcccCCCcHHHHHHHHhhcCHHHHHHHHHHHHHccCCCEEEECC---CCcCCCHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 0 00000000 0 1199999999999999999999999999 999999887 77888888765557899999
Q ss_pred ecCHHHHHhhccCCCeeeecCc
Q psy2071 216 TLDAGKFQQYFDNAPLMNVPGR 237 (302)
Q Consensus 216 thd~~~~~~~~d~~~~l~i~g~ 237 (302)
||+.+++.++||++++|+ .|+
T Consensus 161 sh~~~~~~~~~d~v~~l~-~G~ 181 (182)
T cd03215 161 SSELDELLGLCDRILVMY-EGR 181 (182)
T ss_pred eCCHHHHHHhCCEEEEec-CCc
Confidence 999999999999999997 554
No 65
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.97 E-value=1e-32 Score=238.25 Aligned_cols=169 Identities=19% Similarity=0.188 Sum_probs=128.0
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhH--HHHHHHhhh----hhccccccce
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAA--MSVAQRVSE----EMDCQLGQEV 139 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~--~~~~~~~~~----~~~~~~~~~v 139 (302)
+.+++++.|++|++++|+|+||||||||+++|+|+++|++|++.+.|.+...... ......+.+ ....++.+++
T Consensus 20 il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l 99 (218)
T cd03266 20 AVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTARENL 99 (218)
T ss_pred eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhEEEecCCcccCcCCCHHHHH
Confidence 5789999999999999999999999999999999999999999998865432110 000011111 1123444444
Q ss_pred eeeeeec-------------------CCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHH
Q psy2071 140 GYSIRFE-------------------DCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLK 199 (302)
Q Consensus 140 ~~~~~~~-------------------~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~ 199 (302)
.+..... .....++.+..||+||+||++||+|++.+|++||||| |++++|+.. ..+.
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDE---Pt~~LD~~~~~~l~ 176 (218)
T cd03266 100 EYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDE---PTTGLDVMATRALR 176 (218)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCEEEEcC---CCcCCCHHHHHHHH
Confidence 3221100 0011234566799999999999999999999999999 999999887 7788
Q ss_pred HHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 200 EVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 200 ~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
+++....+.+.|+|++||+.+++..+||++++|+ .|+.
T Consensus 177 ~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~-~G~i 214 (218)
T cd03266 177 EFIRQLRALGKCILFSTHIMQEVERLCDRVVVLH-RGRV 214 (218)
T ss_pred HHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEE-CCEE
Confidence 8888765558899999999999999999999998 6653
No 66
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.97 E-value=1.3e-32 Score=236.97 Aligned_cols=168 Identities=14% Similarity=0.125 Sum_probs=126.9
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhh------HHHHHHHhh----hhhcccc
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVA------AMSVAQRVS----EEMDCQL 135 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~------~~~~~~~~~----~~~~~~~ 135 (302)
+.+++++.+++|++++|+|+||||||||+++|+|+++|++|++.+.|....... .......+. .....++
T Consensus 16 ~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~t~ 95 (214)
T cd03292 16 ALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNV 95 (214)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHheEEEecCchhccCCcH
Confidence 578899999999999999999999999999999999999999999886532211 000011111 1112344
Q ss_pred ccceeeeeee-------------------cCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-
Q psy2071 136 GQEVGYSIRF-------------------EDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM- 195 (302)
Q Consensus 136 ~~~v~~~~~~-------------------~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~- 195 (302)
.+++.+.... ......++.+..||+||+||++||+||+.+|+++|||| |++++|+..
T Consensus 96 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE---Pt~~LD~~~~ 172 (214)
T cd03292 96 YENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADE---PTGNLDPDTT 172 (214)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHcCCCEEEEeC---CCCcCCHHHH
Confidence 4444322110 00011234567799999999999999999999999999 999999887
Q ss_pred HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCc
Q psy2071 196 GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGR 237 (302)
Q Consensus 196 ~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~ 237 (302)
..+.++++...+.+.|+|++||+.+.+..+||++++|+ .|+
T Consensus 173 ~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~-~G~ 213 (214)
T cd03292 173 WEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALE-RGK 213 (214)
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEe-CCc
Confidence 77888887765558899999999999999999999997 554
No 67
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.97 E-value=1.3e-32 Score=238.14 Aligned_cols=169 Identities=14% Similarity=0.124 Sum_probs=128.6
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhH--------HHHHHHhhhhhcccccc
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAA--------MSVAQRVSEEMDCQLGQ 137 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~--------~~~~~~~~~~~~~~~~~ 137 (302)
+.+++++.|++|++++|+||||||||||+++|+|+++|++|++.+.|.+...... ..+.+........++.+
T Consensus 15 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~ 94 (222)
T cd03224 15 ILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPELTVEE 94 (222)
T ss_pred EeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEEeccccccCCCCcHHH
Confidence 5788999999999999999999999999999999999999999998865322111 01111111112234444
Q ss_pred ceeeeeeec-----------------C-CCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHH
Q psy2071 138 EVGYSIRFE-----------------D-CSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVL 198 (302)
Q Consensus 138 ~v~~~~~~~-----------------~-~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l 198 (302)
++.+..... . ....++.+..||+||+||++||+||+.+|++||||| |++++|+.. ..+
T Consensus 95 ~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE---Pt~~LD~~~~~~l 171 (222)
T cd03224 95 NLLLGAYARRRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDE---PSEGLAPKIVEEI 171 (222)
T ss_pred HHHHHhhhcCchhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCEEEECC---CcccCCHHHHHHH
Confidence 443321110 0 011244566799999999999999999999999999 999999887 778
Q ss_pred HHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 199 KEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 199 ~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
.+++.+..+.+.|++++||+++.+..+||++++|+ .|+.
T Consensus 172 ~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~-~G~i 210 (222)
T cd03224 172 FEAIRELRDEGVTILLVEQNARFALEIADRAYVLE-RGRV 210 (222)
T ss_pred HHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEee-CCeE
Confidence 88887765567899999999999999999999998 6653
No 68
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.97 E-value=2e-32 Score=235.58 Aligned_cols=168 Identities=18% Similarity=0.199 Sum_probs=127.5
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchh--hhHHHHHH---Hhhh----hhccccc
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRR--VAAMSVAQ---RVSE----EMDCQLG 136 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~--~~~~~~~~---~~~~----~~~~~~~ 136 (302)
+.+++++.+++|++++|+||||||||||+++|+|+++|++|++.+.|.+... ........ ++.+ ....++.
T Consensus 15 ~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~ 94 (213)
T cd03262 15 VLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFPHLTVL 94 (213)
T ss_pred eecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcceEEecccccCCCCcHH
Confidence 5788999999999999999999999999999999999999999998865421 01000111 1111 1123444
Q ss_pred cceeeeee--------------------ecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-
Q psy2071 137 QEVGYSIR--------------------FEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM- 195 (302)
Q Consensus 137 ~~v~~~~~--------------------~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~- 195 (302)
+++.+... +......++.+..||+||+||+++|+|++.+|++||||| |++++|+..
T Consensus 95 e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDE---P~~~LD~~~~ 171 (213)
T cd03262 95 ENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDE---PTSALDPELV 171 (213)
T ss_pred HHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhcCCCEEEEeC---CccCCCHHHH
Confidence 44433210 000011245567799999999999999999999999999 999999887
Q ss_pred HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCc
Q psy2071 196 GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGR 237 (302)
Q Consensus 196 ~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~ 237 (302)
..+.+++.+..+.+.|+|++||+.+.+.++||++++|+ .|+
T Consensus 172 ~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~-~g~ 212 (213)
T cd03262 172 GEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMD-DGR 212 (213)
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEe-CCc
Confidence 77888888765557899999999999999999999998 654
No 69
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.97 E-value=9.1e-33 Score=237.77 Aligned_cols=168 Identities=17% Similarity=0.188 Sum_probs=126.7
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhh-----HHHHHHHhhhhhcccccccee
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVA-----AMSVAQRVSEEMDCQLGQEVG 140 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~v~ 140 (302)
+++++++.|++|++++|+|+||||||||+++|+|+++|++|++.+.|.+..... ...+.+........++.+++.
T Consensus 15 ~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~ 94 (213)
T cd03301 15 ALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHMTVYDNIA 94 (213)
T ss_pred eeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEEecChhhccCCCHHHHHH
Confidence 578999999999999999999999999999999999999999999886532110 001111111112234444443
Q ss_pred eeeee-------------------cCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHH
Q psy2071 141 YSIRF-------------------EDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKE 200 (302)
Q Consensus 141 ~~~~~-------------------~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ 200 (302)
+.... ......+..+..||+||+||+++|+||+.+|+++|||| |++++|+.. ..+.+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDE---Pt~~LD~~~~~~l~~ 171 (213)
T cd03301 95 FGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDE---PLSNLDAKLRVQMRA 171 (213)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC---CcccCCHHHHHHHHH
Confidence 32110 00011244567799999999999999999999999999 999999887 77888
Q ss_pred HHHHcCC-CcEEEEEEecCHHHHHhhccCCCeeeecCc
Q psy2071 201 VIKQRAD-LKLVIMSATLDAGKFQQYFDNAPLMNVPGR 237 (302)
Q Consensus 201 ll~~~~~-~~~~ii~~thd~~~~~~~~d~~~~l~i~g~ 237 (302)
++....+ .+.|++++|||++++..+||++.+|+ .|+
T Consensus 172 ~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~-~g~ 208 (213)
T cd03301 172 ELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMN-DGQ 208 (213)
T ss_pred HHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEE-CCE
Confidence 8876543 47899999999999999999999997 665
No 70
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.97 E-value=8.1e-33 Score=237.24 Aligned_cols=169 Identities=18% Similarity=0.181 Sum_probs=128.0
Q ss_pred HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhH-HHHHHHhhh----hhccccccce
Q psy2071 65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAA-MSVAQRVSE----EMDCQLGQEV 139 (302)
Q Consensus 65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~-~~~~~~~~~----~~~~~~~~~v 139 (302)
.+++++++.+++|++++|+|+||||||||+++|+|+++|++|++.++|.+...... ......+.+ ....++.+++
T Consensus 14 ~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l 93 (208)
T cd03268 14 RVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGALIEAPGFYPNLTARENL 93 (208)
T ss_pred EeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhEEEecCCCccCccCcHHHHH
Confidence 36788999999999999999999999999999999999999999998875432100 000011111 1123444444
Q ss_pred eeeeee---------------cCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHH
Q psy2071 140 GYSIRF---------------EDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVIK 203 (302)
Q Consensus 140 ~~~~~~---------------~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~ 203 (302)
.+.... ......++.+..||+||+||+++|+|++.+|++||||| |++++|+.. ..+.+++.
T Consensus 94 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDE---Pt~~LD~~~~~~l~~~l~ 170 (208)
T cd03268 94 RLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDE---PTNGLDPDGIKELRELIL 170 (208)
T ss_pred HHHHHhcCCcHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECC---CcccCCHHHHHHHHHHHH
Confidence 322110 00011234567799999999999999999999999999 999999887 77888887
Q ss_pred HcCCCcEEEEEEecCHHHHHhhccCCCeeeecCc
Q psy2071 204 QRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGR 237 (302)
Q Consensus 204 ~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~ 237 (302)
...+.+.|+|++|||.+++..+||++++|+ .|+
T Consensus 171 ~~~~~~~tii~~tH~~~~~~~~~d~v~~l~-~g~ 203 (208)
T cd03268 171 SLRDQGITVLISSHLLSEIQKVADRIGIIN-KGK 203 (208)
T ss_pred HHHHCCCEEEEEcCCHHHHHHhcCEEEEEE-CCE
Confidence 665567899999999999999999999998 665
No 71
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=1.9e-32 Score=245.99 Aligned_cols=169 Identities=15% Similarity=0.154 Sum_probs=130.1
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhh-----hHHHHHHHhhh-----hhcccc
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRV-----AAMSVAQRVSE-----EMDCQL 135 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~-----~~~~~~~~~~~-----~~~~~~ 135 (302)
+++++++.|++|++++|+|+||||||||+++|+|+++|++|++.+.|.+.... .......++.+ .+..++
T Consensus 22 ~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv 101 (287)
T PRK13637 22 ALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEETI 101 (287)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHhhceEEEecCchhccccccH
Confidence 68899999999999999999999999999999999999999999988654221 00000111111 112344
Q ss_pred ccceeeeee------------------ecCC---CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHH
Q psy2071 136 GQEVGYSIR------------------FEDC---SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDIL 194 (302)
Q Consensus 136 ~~~v~~~~~------------------~~~~---~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~ 194 (302)
.+++.+... .... ...++.+..||+||+||++||+||+.+|++||||| |++++|+.
T Consensus 102 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~~P~llllDE---Pt~gLD~~ 178 (287)
T PRK13637 102 EKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDE---PTAGLDPK 178 (287)
T ss_pred HHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHcCCCEEEEEC---CccCCCHH
Confidence 444433210 0111 12356678899999999999999999999999999 99999988
Q ss_pred H-HHHHHHHHHcCC-CcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 195 M-GVLKEVIKQRAD-LKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 195 ~-~~l~~ll~~~~~-~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
. ..+.+++....+ .+.||+++|||++++..+||++++|+ .|+.
T Consensus 179 ~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~-~G~i 223 (287)
T PRK13637 179 GRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMN-KGKC 223 (287)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEE-CCEE
Confidence 7 788888887654 48999999999999999999999998 6654
No 72
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.97 E-value=4e-32 Score=234.46 Aligned_cols=171 Identities=19% Similarity=0.214 Sum_probs=134.6
Q ss_pred hhHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhhccccccceeee
Q psy2071 63 VFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYS 142 (302)
Q Consensus 63 ~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 142 (302)
...++++|++.|++||+++|+|+|||||||+-++++|+++|++|+|.+.|.+...........++...+ +.||..
T Consensus 25 ~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL-----~~Vgl~ 99 (268)
T COG4608 25 YVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLSKEERRERVLELL-----EKVGLP 99 (268)
T ss_pred ceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcchhHHHHHHHHHH-----HHhCCC
Confidence 355789999999999999999999999999999999999999999999998765443222222222211 223311
Q ss_pred eeecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHc-CCCcEEEEEEecCHH
Q psy2071 143 IRFEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVIKQR-ADLKLVIMSATLDAG 220 (302)
Q Consensus 143 ~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~-~~~~~~ii~~thd~~ 220 (302)
.....+...+|||||+||++|||||+.+|+++++|| |++++|... ..+.+++... .+.+.+.+++|||+.
T Consensus 100 -----~~~~~ryPhelSGGQrQRi~IARALal~P~liV~DE---pvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~ 171 (268)
T COG4608 100 -----EEFLYRYPHELSGGQRQRIGIARALALNPKLIVADE---PVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLS 171 (268)
T ss_pred -----HHHhhcCCcccCchhhhhHHHHHHHhhCCcEEEecC---chhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHH
Confidence 122345678899999999999999999999999999 999999777 6777777754 456999999999999
Q ss_pred HHHhhccCCCeeeecCcC----CccceeecC
Q psy2071 221 KFQQYFDNAPLMNVPGRT----HPVEIFYTP 247 (302)
Q Consensus 221 ~~~~~~d~~~~l~i~g~~----~~~~~~~~~ 247 (302)
.+..+||++++|. .|+. ...++|..|
T Consensus 172 vv~~isdri~VMy-~G~iVE~g~~~~~~~~p 201 (268)
T COG4608 172 VVRYISDRIAVMY-LGKIVEIGPTEEVFSNP 201 (268)
T ss_pred hhhhhcccEEEEe-cCceeEecCHHHHhhCC
Confidence 9999999999999 5543 344455533
No 73
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=2.3e-32 Score=239.61 Aligned_cols=169 Identities=12% Similarity=0.136 Sum_probs=127.9
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhh---HHHH---HHHhhh----hhcccc
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVA---AMSV---AQRVSE----EMDCQL 135 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~---~~~~---~~~~~~----~~~~~~ 135 (302)
+++++++.+++|++++|+||||||||||+++|+|+++|++|++.++|.+..... .... ...+.+ ....++
T Consensus 16 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 95 (241)
T cd03256 16 ALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSV 95 (241)
T ss_pred EEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhccEEEcccCcccccCcH
Confidence 578899999999999999999999999999999999999999999886543211 0000 111111 122344
Q ss_pred ccceeeeee---------------------------ecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCC
Q psy2071 136 GQEVGYSIR---------------------------FEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERT 188 (302)
Q Consensus 136 ~~~v~~~~~---------------------------~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~ 188 (302)
.+++.+... +......++.+..||+||+||++||+||+.+|++||||| |+
T Consensus 96 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDE---Pt 172 (241)
T cd03256 96 LENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADE---PV 172 (241)
T ss_pred HHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC---cc
Confidence 444432110 000001234556799999999999999999999999999 99
Q ss_pred cchHHHH-HHHHHHHHHcCC-CcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 189 LATDILM-GVLKEVIKQRAD-LKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 189 ~~lD~~~-~~l~~ll~~~~~-~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
+++|+.. ..+.+++....+ .+.|||++|||++.+..+||++++|+ .|+.
T Consensus 173 ~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~-~G~i 223 (241)
T cd03256 173 ASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLK-DGRI 223 (241)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEE-CCEE
Confidence 9999887 778888876643 47899999999999999999999998 6653
No 74
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.97 E-value=9.9e-33 Score=243.07 Aligned_cols=182 Identities=19% Similarity=0.227 Sum_probs=133.3
Q ss_pred hHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhccc-c----cCCCEEEeecCchhhhHH-------------HHHH
Q psy2071 64 FEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYS-K----SVGAKAVACTQPRRVAAM-------------SVAQ 125 (302)
Q Consensus 64 ~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~-~----~~G~~~i~~~~~~~~~~~-------------~~~~ 125 (302)
..+.+++++.|++||+++|+|+|||||||+.+.|+|+++ + .+|++.+.|.+....... .+..
T Consensus 18 v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~p 97 (316)
T COG0444 18 VKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDP 97 (316)
T ss_pred EEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEEcCc
Confidence 356899999999999999999999999999999999997 3 458899998753322211 1111
Q ss_pred HhhhhhccccccceeeeeeecC--------------------CCCc----cccccccCHHHHHHHhccccCCCCCcEEEE
Q psy2071 126 RVSEEMDCQLGQEVGYSIRFED--------------------CSSP----KTVLKYMTDGMLLREGMSDPMLENYQVILL 181 (302)
Q Consensus 126 ~~~~~~~~~~~~~v~~~~~~~~--------------------~~~~----~~~~~~lS~G~~qr~~la~al~~~p~lliL 181 (302)
.-+..+..+++..+...++.+. .... +....+|||||+||++||.||+.+|++||.
T Consensus 98 ~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQRV~IAmala~~P~LlIA 177 (316)
T COG0444 98 MTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMALALNPKLLIA 177 (316)
T ss_pred hhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHHHHHHHHHHhCCCCEEEe
Confidence 1112222333333332222111 1111 233455999999999999999999999999
Q ss_pred cCCCCCCcchHHHH-HHHHHHHHHcC-CCcEEEEEEecCHHHHHhhccCCCeeeecCc----CCccceeecCCC
Q psy2071 182 DEAHERTLATDILM-GVLKEVIKQRA-DLKLVIMSATLDAGKFQQYFDNAPLMNVPGR----THPVEIFYTPEP 249 (302)
Q Consensus 182 DE~~~p~~~lD~~~-~~l~~ll~~~~-~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~----~~~~~~~~~~~~ 249 (302)
|| ||.+||... ..+.++++++. +.|.+++++|||+..+.++||+|+||. .|+ +...++|+.|.+
T Consensus 178 DE---PTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMY-aG~iVE~g~~~~i~~~P~H 247 (316)
T COG0444 178 DE---PTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMY-AGRIVEEGPVEEIFKNPKH 247 (316)
T ss_pred CC---CcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEE-CcEEEEeCCHHHHhcCCCC
Confidence 99 999999877 67777777554 579999999999999999999999999 554 345566666654
No 75
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=1.4e-32 Score=239.77 Aligned_cols=169 Identities=17% Similarity=0.172 Sum_probs=128.2
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhH------HHHHHHhhh----hhcccc
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAA------MSVAQRVSE----EMDCQL 135 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~------~~~~~~~~~----~~~~~~ 135 (302)
+++++++.|++|++++|+||||||||||+++|+|+++|++|++.++|.+...... ......+.+ ....++
T Consensus 20 il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~ 99 (233)
T cd03258 20 ALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTV 99 (233)
T ss_pred eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEccCcccCCCCcH
Confidence 5788999999999999999999999999999999999999999998875422110 000111111 112344
Q ss_pred ccceeeeeee-------------------cCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-
Q psy2071 136 GQEVGYSIRF-------------------EDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM- 195 (302)
Q Consensus 136 ~~~v~~~~~~-------------------~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~- 195 (302)
.+++.+.... ......++.+..||+||+||++||+||+.+|+++|||| |++++|+..
T Consensus 100 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDE---P~~~LD~~~~ 176 (233)
T cd03258 100 FENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDE---ATSALDPETT 176 (233)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEecC---CCCcCCHHHH
Confidence 4444322110 00011234567799999999999999999999999999 999999887
Q ss_pred HHHHHHHHHcCC-CcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 196 GVLKEVIKQRAD-LKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 196 ~~l~~ll~~~~~-~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
..+.+++....+ .+.|||++||+.+.+..+||++++|+ .|+.
T Consensus 177 ~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~-~G~i 219 (233)
T cd03258 177 QSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVME-KGEV 219 (233)
T ss_pred HHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEE-CCEE
Confidence 778888876654 47899999999999999999999998 6654
No 76
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=9.7e-33 Score=253.45 Aligned_cols=169 Identities=17% Similarity=0.193 Sum_probs=129.4
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHH---HHH---Hhhh----hhcccc
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMS---VAQ---RVSE----EMDCQL 135 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~---~~~---~~~~----~~~~~~ 135 (302)
+++++++.|++|++++|+||||||||||+++|+|+++|++|++.+.|.+........ ... .+.+ ....++
T Consensus 20 il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~~~~tv 99 (343)
T PRK11153 20 ALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSRTV 99 (343)
T ss_pred EEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCccCCCCcH
Confidence 578899999999999999999999999999999999999999999987643211100 011 1111 122355
Q ss_pred ccceeeeeeec-------------------CCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-
Q psy2071 136 GQEVGYSIRFE-------------------DCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM- 195 (302)
Q Consensus 136 ~~~v~~~~~~~-------------------~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~- 195 (302)
.+++.+..... .....++.+..||+||+||++||+||+.+|++||||| ||+++|+..
T Consensus 100 ~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~iLlLDE---Pts~LD~~~~ 176 (343)
T PRK11153 100 FDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKVLLCDE---ATSALDPATT 176 (343)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeC---CcccCCHHHH
Confidence 55554321110 0012245567799999999999999999999999999 999999887
Q ss_pred HHHHHHHHHcCC-CcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 196 GVLKEVIKQRAD-LKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 196 ~~l~~ll~~~~~-~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
..+.+++.+..+ .+.|+|++||+++++.++||++++|+ .|+.
T Consensus 177 ~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~-~G~i 219 (343)
T PRK11153 177 RSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVID-AGRL 219 (343)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEE-CCEE
Confidence 778888876643 48899999999999999999999998 5653
No 77
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=2.8e-32 Score=246.46 Aligned_cols=169 Identities=15% Similarity=0.144 Sum_probs=129.5
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchh------------------------hhHH
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRR------------------------VAAM 121 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~------------------------~~~~ 121 (302)
+++++++.|++|++++|+|+||||||||+++|+|+++|++|++.+.|.+... ....
T Consensus 22 ~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (305)
T PRK13651 22 ALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIK 101 (305)
T ss_pred ceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccccccccccccccccccchHH
Confidence 5789999999999999999999999999999999999999999997643210 0000
Q ss_pred HHH---HHhhh-----hhccccccceeeeeee------------------cCC--CCccccccccCHHHHHHHhccccCC
Q psy2071 122 SVA---QRVSE-----EMDCQLGQEVGYSIRF------------------EDC--SSPKTVLKYMTDGMLLREGMSDPML 173 (302)
Q Consensus 122 ~~~---~~~~~-----~~~~~~~~~v~~~~~~------------------~~~--~~~~~~~~~lS~G~~qr~~la~al~ 173 (302)
... .++.+ .+..++.+++.+.... ... ...++.+..||+||+||++||++|+
T Consensus 102 ~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqrvalA~aL~ 181 (305)
T PRK13651 102 EIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQRSPFELSGGQKRRVALAGILA 181 (305)
T ss_pred HHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHH
Confidence 111 11111 1223555555433210 011 1234566779999999999999999
Q ss_pred CCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 174 ENYQVILLDEAHERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 174 ~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
.+|++||||| ||+++|+.. ..+.+++....+.|.|||++|||++.+.++||++++|+ .|+.
T Consensus 182 ~~P~lLlLDE---Pt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~adrv~vl~-~G~i 243 (305)
T PRK13651 182 MEPDFLVFDE---PTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTIFFK-DGKI 243 (305)
T ss_pred hCCCEEEEeC---CCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHhCCEEEEEE-CCEE
Confidence 9999999999 999999887 77888888766668999999999999999999999998 6653
No 78
>PRK10908 cell division protein FtsE; Provisional
Probab=99.97 E-value=2.2e-32 Score=236.84 Aligned_cols=168 Identities=17% Similarity=0.165 Sum_probs=127.1
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhH------HHHHHHhhh----hhcccc
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAA------MSVAQRVSE----EMDCQL 135 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~------~~~~~~~~~----~~~~~~ 135 (302)
+++++++.|++|++++|+||||||||||+++|+|+++|++|++.+.|.+...... ......+.+ .+..++
T Consensus 17 ~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 96 (222)
T PRK10908 17 ALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLLMDRTV 96 (222)
T ss_pred EEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhheEEEecCccccccccH
Confidence 5788999999999999999999999999999999999999999998865432110 000111111 122344
Q ss_pred ccceeeeeee-------------------cCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-
Q psy2071 136 GQEVGYSIRF-------------------EDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM- 195 (302)
Q Consensus 136 ~~~v~~~~~~-------------------~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~- 195 (302)
.+++.+.... ......++.+..||+||+||++||+|++.+|++||||| |++++|+..
T Consensus 97 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE---Pt~~LD~~~~ 173 (222)
T PRK10908 97 YDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADE---PTGNLDDALS 173 (222)
T ss_pred HHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHcCCCEEEEeC---CCCcCCHHHH
Confidence 4444332110 00011234567799999999999999999999999999 999999877
Q ss_pred HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCc
Q psy2071 196 GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGR 237 (302)
Q Consensus 196 ~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~ 237 (302)
..+.+++....+.+.+++++||+++++..+||++++|+ .|+
T Consensus 174 ~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~-~G~ 214 (222)
T PRK10908 174 EGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLS-DGH 214 (222)
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEE-CCE
Confidence 77778887665557899999999999999999999998 554
No 79
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=2e-32 Score=235.12 Aligned_cols=169 Identities=16% Similarity=0.167 Sum_probs=126.1
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhh---hHHHHHHHhhhhhccccccceeee
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRV---AAMSVAQRVSEEMDCQLGQEVGYS 142 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~ 142 (302)
+.+++++.|++|++++|+|+||||||||+++|+|+++|++|++.++|...... ....+.+........++.+++.+.
T Consensus 15 ~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~ 94 (210)
T cd03269 15 ALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPEERGLYPKMKVIDQLVYL 94 (210)
T ss_pred EEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHccEEEeccCCcCCcCCcHHHHHHHH
Confidence 56889999999999999999999999999999999999999999988654210 000001110111122333333221
Q ss_pred ee-------------------ecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHH
Q psy2071 143 IR-------------------FEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVI 202 (302)
Q Consensus 143 ~~-------------------~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll 202 (302)
.. +......++.+..||+||+||++||++|+.+|++||||| |++++|+.. ..+.+++
T Consensus 95 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~lllDE---P~~~LD~~~~~~~~~~l 171 (210)
T cd03269 95 AQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDE---PFSGLDPVNVELLKDVI 171 (210)
T ss_pred HHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeC---CCcCCCHHHHHHHHHHH
Confidence 10 000011234567799999999999999999999999999 999999887 7788888
Q ss_pred HHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 203 KQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 203 ~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
+...+.+.||+++||+.+.+.++||++++|+ .|+.
T Consensus 172 ~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~-~g~i 206 (210)
T cd03269 172 RELARAGKTVILSTHQMELVEELCDRVLLLN-KGRA 206 (210)
T ss_pred HHHHHCCCEEEEECCCHHHHHHhhhEEEEEe-CCEE
Confidence 7765557899999999999999999999998 6653
No 80
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.97 E-value=2e-32 Score=257.37 Aligned_cols=171 Identities=18% Similarity=0.204 Sum_probs=133.2
Q ss_pred hhHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCc--h---------hhhHHHHHHHhhhhh
Q psy2071 63 VFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQP--R---------RVAAMSVAQRVSEEM 131 (302)
Q Consensus 63 ~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~--~---------~~~~~~~~~~~~~~~ 131 (302)
...+.++|++.+.+||+++|+|+|||||||+.++|+|+.+|++|.+.+.|.+. . ++..+++.+..+..+
T Consensus 303 ~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnP 382 (539)
T COG1123 303 EVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNP 382 (539)
T ss_pred ceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccccccchhhhhhhheEEEEeCcccccCc
Confidence 45678999999999999999999999999999999999999999999998651 1 011111122223334
Q ss_pred ccccccceeeeeeecCCC---------------------CccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcc
Q psy2071 132 DCQLGQEVGYSIRFEDCS---------------------SPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLA 190 (302)
Q Consensus 132 ~~~~~~~v~~~~~~~~~~---------------------~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~ 190 (302)
..++++.+...+.++... ..++....|||||+||++|||||+.+|++||+|| |+++
T Consensus 383 r~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQRvaIARALa~~P~lli~DE---p~Sa 459 (539)
T COG1123 383 RMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIARALALEPKLLILDE---PVSA 459 (539)
T ss_pred cccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhHHHHHHHHHhcCCCEEEecC---Cccc
Confidence 455555555544332211 1244566799999999999999999999999999 9999
Q ss_pred hHHHH-HHHHHHHHH-cCCCcEEEEEEecCHHHHHhhccCCCeeeecCc
Q psy2071 191 TDILM-GVLKEVIKQ-RADLKLVIMSATLDAGKFQQYFDNAPLMNVPGR 237 (302)
Q Consensus 191 lD~~~-~~l~~ll~~-~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~ 237 (302)
+|+.. ..+.+++.+ +.+.|.|++++|||+..+..+||||++|+ .|+
T Consensus 460 LDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~-~G~ 507 (539)
T COG1123 460 LDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMY-DGR 507 (539)
T ss_pred cCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEE-CCe
Confidence 99887 666677665 45679999999999999999999999999 554
No 81
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=2.3e-32 Score=243.38 Aligned_cols=174 Identities=17% Similarity=0.163 Sum_probs=130.2
Q ss_pred CChhHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHH-----------HHHHHhhh
Q psy2071 61 LPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAM-----------SVAQRVSE 129 (302)
Q Consensus 61 lp~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~-----------~~~~~~~~ 129 (302)
+....+++++++.|++|++++|+||||||||||+++|+|+++|++|++.++|......... .+.+....
T Consensus 34 ~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~ 113 (269)
T cd03294 34 TGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFAL 113 (269)
T ss_pred cCCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcEEEEecCccc
Confidence 3334457999999999999999999999999999999999999999999988653221100 00111111
Q ss_pred hhccccccceeeeeee-------------------cCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcc
Q psy2071 130 EMDCQLGQEVGYSIRF-------------------EDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLA 190 (302)
Q Consensus 130 ~~~~~~~~~v~~~~~~-------------------~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~ 190 (302)
....++.+++.+.... ......++.+..||+||+||++||+||+.+|++||||| |+++
T Consensus 114 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~~p~illLDE---Pt~~ 190 (269)
T cd03294 114 LPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDE---AFSA 190 (269)
T ss_pred CCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcC---CCcc
Confidence 1223444444332110 00011245567799999999999999999999999999 9999
Q ss_pred hHHHH-HHHHHHHHHcC-CCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 191 TDILM-GVLKEVIKQRA-DLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 191 lD~~~-~~l~~ll~~~~-~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
+|+.. ..+.+++.... +.|.|||++||+++++..+||++++|+ .|+.
T Consensus 191 LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~-~G~i 239 (269)
T cd03294 191 LDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMK-DGRL 239 (269)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEE-CCEE
Confidence 99887 77888887654 347899999999999999999999998 6653
No 82
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.97 E-value=1.2e-32 Score=248.93 Aligned_cols=169 Identities=15% Similarity=0.177 Sum_probs=129.5
Q ss_pred HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhH--HHHHHHh----hhhhccccccc
Q psy2071 65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAA--MSVAQRV----SEEMDCQLGQE 138 (302)
Q Consensus 65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~--~~~~~~~----~~~~~~~~~~~ 138 (302)
.+++++++.|++|++++|+||||||||||+++|+|+++|++|++.+.|.+...... ......+ ......++.++
T Consensus 16 ~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig~~~q~~~l~~~~tv~e~ 95 (301)
T TIGR03522 16 NALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMYVREY 95 (301)
T ss_pred EEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhceEEecCCCCCCCCCcHHHH
Confidence 36789999999999999999999999999999999999999999999865432110 0001111 11122344444
Q ss_pred eeeeee-------------------ecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHH
Q psy2071 139 VGYSIR-------------------FEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVL 198 (302)
Q Consensus 139 v~~~~~-------------------~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l 198 (302)
+.+... +......++.+..||+||+||+++|+||+.+|++||||| |++++|+.. ..+
T Consensus 96 l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lliLDE---Pt~gLD~~~~~~l 172 (301)
T TIGR03522 96 LQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDE---PTTGLDPNQLVEI 172 (301)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcC---CcccCCHHHHHHH
Confidence 432111 111112355677899999999999999999999999999 999999888 788
Q ss_pred HHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 199 KEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 199 ~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
+++++...+ +.||+++||+++++.++||++++|+ .|+.
T Consensus 173 ~~~l~~~~~-~~tiii~sH~l~~~~~~~d~i~~l~-~G~i 210 (301)
T TIGR03522 173 RNVIKNIGK-DKTIILSTHIMQEVEAICDRVIIIN-KGKI 210 (301)
T ss_pred HHHHHHhcC-CCEEEEEcCCHHHHHHhCCEEEEEE-CCEE
Confidence 888887765 6899999999999999999999998 5543
No 83
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=3.4e-32 Score=244.39 Aligned_cols=169 Identities=16% Similarity=0.169 Sum_probs=129.6
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhh-------hHHHHHHHhhh-----hhcc
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRV-------AAMSVAQRVSE-----EMDC 133 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~-------~~~~~~~~~~~-----~~~~ 133 (302)
+++++++.|++|++++|+|+||||||||+++|+|+++|++|++.+.|.+.... .......++.+ ....
T Consensus 22 ~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~ 101 (287)
T PRK13641 22 GLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFEN 101 (287)
T ss_pred ceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhceEEEEeChhhhhccc
Confidence 57899999999999999999999999999999999999999999988654210 00000011111 1123
Q ss_pred ccccceeeeee------------------ecCC--CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHH
Q psy2071 134 QLGQEVGYSIR------------------FEDC--SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDI 193 (302)
Q Consensus 134 ~~~~~v~~~~~------------------~~~~--~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~ 193 (302)
++.+++.+... .... ...++.+..||+||+||++||+||+.+|++||||| |++++|+
T Consensus 102 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral~~~p~lLlLDE---Pt~gLD~ 178 (287)
T PRK13641 102 TVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDE---PAAGLDP 178 (287)
T ss_pred hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEEC---CCCCCCH
Confidence 44444432110 0011 12345677899999999999999999999999999 9999998
Q ss_pred HH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 194 LM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 194 ~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
.. ..+.+++....+.+.||+++|||++.+..+||++++|+ .|+.
T Consensus 179 ~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~-~G~i 223 (287)
T PRK13641 179 EGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLE-HGKL 223 (287)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEE-CCEE
Confidence 87 77888888776568999999999999999999999998 6653
No 84
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.97 E-value=2.9e-32 Score=237.38 Aligned_cols=167 Identities=20% Similarity=0.199 Sum_probs=124.5
Q ss_pred HHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhH--HHHHHHhhhhhccccccceeeeee-
Q psy2071 68 TEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAA--MSVAQRVSEEMDCQLGQEVGYSIR- 144 (302)
Q Consensus 68 ~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~- 144 (302)
+++++.|++|++++|+|+||||||||+++|+|+++|++|++.++|.+...... ..+.+........++.+++.+...
T Consensus 2 ~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~~~~~ 81 (230)
T TIGR01184 2 KGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIALAVDR 81 (230)
T ss_pred CceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhheEEecCcccCCCCCHHHHHHHHHHh
Confidence 46788999999999999999999999999999999999999998865322110 011111111112334444332110
Q ss_pred --------------------ecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHH
Q psy2071 145 --------------------FEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVIK 203 (302)
Q Consensus 145 --------------------~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~ 203 (302)
+......++.+..||+||+||++||++|+.+|++||||| |++++|+.. ..+.+++.
T Consensus 82 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDE---Pt~gLD~~~~~~l~~~l~ 158 (230)
T TIGR01184 82 VLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDE---PFGALDALTRGNLQEELM 158 (230)
T ss_pred cccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcC---CCcCCCHHHHHHHHHHHH
Confidence 000011245567799999999999999999999999999 999999887 77888887
Q ss_pred HcCC-CcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 204 QRAD-LKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 204 ~~~~-~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
+..+ .+.|||++||+++++.++||++++|+ .|+.
T Consensus 159 ~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~-~G~i 193 (230)
T TIGR01184 159 QIWEEHRVTVLMVTHDVDEALLLSDRVVMLT-NGPA 193 (230)
T ss_pred HHHHhcCCEEEEEeCCHHHHHHhcCEEEEEe-CCcE
Confidence 6543 47899999999999999999999998 6654
No 85
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=2.8e-32 Score=238.83 Aligned_cols=169 Identities=20% Similarity=0.176 Sum_probs=127.4
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhh-----HHHHHHHhhhhhcccccccee
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVA-----AMSVAQRVSEEMDCQLGQEVG 140 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~v~ 140 (302)
+++++++.|++|++++|+||||||||||+++|+|+++|++|++.+.|.+..... ...+.+........++.+++.
T Consensus 17 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~ 96 (239)
T cd03296 17 ALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFVFQHYALFRHMTVFDNVA 96 (239)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEEEecCCcccCCCCHHHHHh
Confidence 578999999999999999999999999999999999999999999886432111 000111111111234444443
Q ss_pred eeeeec-----------------------CCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-H
Q psy2071 141 YSIRFE-----------------------DCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-G 196 (302)
Q Consensus 141 ~~~~~~-----------------------~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~ 196 (302)
+..... .....++.+..||+||+||++||+||+.+|++||||| |++++|+.. .
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDE---P~~~LD~~~~~ 173 (239)
T cd03296 97 FGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDE---PFGALDAKVRK 173 (239)
T ss_pred hhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcC---CcccCCHHHHH
Confidence 321100 0011234556799999999999999999999999999 999999887 7
Q ss_pred HHHHHHHHcCC-CcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 197 VLKEVIKQRAD-LKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 197 ~l~~ll~~~~~-~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
.+.+++....+ .+.|||++||+.+.+..+||++++|+ .|+.
T Consensus 174 ~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~-~G~i 215 (239)
T cd03296 174 ELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMN-KGRI 215 (239)
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEE-CCeE
Confidence 78888877654 37899999999999999999999998 6654
No 86
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=3.2e-32 Score=244.59 Aligned_cols=169 Identities=15% Similarity=0.117 Sum_probs=129.7
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchh----hhHHHH---HHHhhh-----hhcc
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRR----VAAMSV---AQRVSE-----EMDC 133 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~----~~~~~~---~~~~~~-----~~~~ 133 (302)
+++++++.|++|++++|+|+||||||||+++|+|+++|++|++.++|.+... ...... ...+++ .+..
T Consensus 21 ~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~ 100 (288)
T PRK13643 21 ALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFEE 100 (288)
T ss_pred ceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHHHHhhEEEEecCcchhcccc
Confidence 5789999999999999999999999999999999999999999999865421 000001 111111 1123
Q ss_pred ccccceeeeeee------------------cCC--CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHH
Q psy2071 134 QLGQEVGYSIRF------------------EDC--SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDI 193 (302)
Q Consensus 134 ~~~~~v~~~~~~------------------~~~--~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~ 193 (302)
++.+++.+.... ... ...++.+..||+||+||++||++|+.+|++||||| |++++|+
T Consensus 101 tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL~~~p~illLDE---Pt~gLD~ 177 (288)
T PRK13643 101 TVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDE---PTAGLDP 177 (288)
T ss_pred hHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHHHhCCCEEEEEC---CccCCCH
Confidence 444444332110 011 12245667899999999999999999999999999 9999998
Q ss_pred HH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 194 LM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 194 ~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
.. ..+.+++..+++.+.||+++|||++++..+||++++|+ .|+.
T Consensus 178 ~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~-~G~i 222 (288)
T PRK13643 178 KARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLE-KGHI 222 (288)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEE-CCEE
Confidence 87 77888888765568999999999999999999999998 6654
No 87
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.97 E-value=1.4e-32 Score=250.88 Aligned_cols=170 Identities=16% Similarity=0.163 Sum_probs=129.3
Q ss_pred HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHH---HH---HHHhh------hhhc
Q psy2071 65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAM---SV---AQRVS------EEMD 132 (302)
Q Consensus 65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~---~~---~~~~~------~~~~ 132 (302)
.+++++++.|++||+++|+|+||||||||+++|+|+++|++|++.+.|.+....... .. ...+. ..+.
T Consensus 35 ~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~ 114 (331)
T PRK15079 35 KAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASLNPR 114 (331)
T ss_pred EEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCcCCHHHHHHHhCceEEEecCchhhcCCC
Confidence 357899999999999999999999999999999999999999999998764321110 00 11111 1223
Q ss_pred cccccceeeeeeec--------------------CC--CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcc
Q psy2071 133 CQLGQEVGYSIRFE--------------------DC--SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLA 190 (302)
Q Consensus 133 ~~~~~~v~~~~~~~--------------------~~--~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~ 190 (302)
.++.+++.+.+... .. ...++....|||||+||++||+||+.+|++||+|| ||++
T Consensus 115 ~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDE---Pts~ 191 (331)
T PRK15079 115 MTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALILEPKLIICDE---PVSA 191 (331)
T ss_pred CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC---CCcc
Confidence 45555543321100 00 01245567799999999999999999999999999 9999
Q ss_pred hHHHH-HHHHHHHHHcCC-CcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 191 TDILM-GVLKEVIKQRAD-LKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 191 lD~~~-~~l~~ll~~~~~-~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
+|+.. ..+.+++....+ .+.|++++|||++.+..+||++++|+ .|+.
T Consensus 192 LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~-~G~i 240 (331)
T PRK15079 192 LDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMY-LGHA 240 (331)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEE-CCEE
Confidence 99887 777788776544 48999999999999999999999998 5543
No 88
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.97 E-value=2.9e-32 Score=240.84 Aligned_cols=170 Identities=16% Similarity=0.170 Sum_probs=127.4
Q ss_pred HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhh--HHHHHHHhhhhhccccccceeee
Q psy2071 65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVA--AMSVAQRVSEEMDCQLGQEVGYS 142 (302)
Q Consensus 65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~ 142 (302)
.+++++++.|++|++++|+||||||||||+++|+|+++|++|++.+.+....... ...+.+........++.+++.+.
T Consensus 26 ~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~ 105 (257)
T PRK11247 26 TVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMFQDARLLPWKKVIDNVGLG 105 (257)
T ss_pred ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEEecCccCCCCCcHHHHHHhc
Confidence 3578999999999999999999999999999999999999999988765432110 00111111111123444554432
Q ss_pred ee-------------ecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHc-CC
Q psy2071 143 IR-------------FEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVIKQR-AD 207 (302)
Q Consensus 143 ~~-------------~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~-~~ 207 (302)
.. +......+..+..||+||+||++||++|+.+|++||||| |++++|+.. ..+.+++.+. ++
T Consensus 106 ~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDE---Pt~~LD~~~~~~l~~~L~~~~~~ 182 (257)
T PRK11247 106 LKGQWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDE---PLGALDALTRIEMQDLIESLWQQ 182 (257)
T ss_pred ccchHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC---CCCCCCHHHHHHHHHHHHHHHHH
Confidence 11 000112245567899999999999999999999999999 999999887 7788888765 34
Q ss_pred CcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 208 LKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 208 ~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
.+.|||++|||++.+..+||++++|+ .|+.
T Consensus 183 ~~~tviivsHd~~~~~~~~d~i~~l~-~G~i 212 (257)
T PRK11247 183 HGFTVLLVTHDVSEAVAMADRVLLIE-EGKI 212 (257)
T ss_pred cCCEEEEEeCCHHHHHHhCCEEEEEE-CCEE
Confidence 57899999999999999999999998 6654
No 89
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=2.8e-32 Score=235.88 Aligned_cols=168 Identities=17% Similarity=0.149 Sum_probs=125.4
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCch----hhhHHHHHHHhhhhhccccccceee
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPR----RVAAMSVAQRVSEEMDCQLGQEVGY 141 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~----~~~~~~~~~~~~~~~~~~~~~~v~~ 141 (302)
+++++++.|++|++++|+||||||||||+++|+|+++|++|++.+.|.+.. .++.+.. ........++.+++.+
T Consensus 19 il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~q--~~~~~~~~tv~e~l~~ 96 (220)
T cd03293 19 ALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVFQ--QDALLPWLTVLDNVAL 96 (220)
T ss_pred EEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEEEEec--ccccccCCCHHHHHHH
Confidence 578899999999999999999999999999999999999999999875432 1111111 1001111233333322
Q ss_pred eee-------------------ecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHH
Q psy2071 142 SIR-------------------FEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEV 201 (302)
Q Consensus 142 ~~~-------------------~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~l 201 (302)
... +......++.+..||+||+||++||+||+.+|++||||| |++++|+.. ..+.++
T Consensus 97 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDE---Pt~~LD~~~~~~~~~~ 173 (220)
T cd03293 97 GLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDE---PFSALDALTREQLQEE 173 (220)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEECC---CCCCCCHHHHHHHHHH
Confidence 110 000111245567899999999999999999999999999 999999888 778888
Q ss_pred HHHcC-CCcEEEEEEecCHHHHHhhccCCCeeee-cCcC
Q psy2071 202 IKQRA-DLKLVIMSATLDAGKFQQYFDNAPLMNV-PGRT 238 (302)
Q Consensus 202 l~~~~-~~~~~ii~~thd~~~~~~~~d~~~~l~i-~g~~ 238 (302)
+.+.. +.+.||+++||+++++..+||++++|+- .|+.
T Consensus 174 l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i 212 (220)
T cd03293 174 LLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRI 212 (220)
T ss_pred HHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEE
Confidence 87653 4478999999999999999999999973 3543
No 90
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.97 E-value=3.9e-32 Score=236.53 Aligned_cols=169 Identities=13% Similarity=0.082 Sum_probs=127.9
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhH--------HHHHHHhhhhhcccccc
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAA--------MSVAQRVSEEMDCQLGQ 137 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~--------~~~~~~~~~~~~~~~~~ 137 (302)
+++++++.|++|++++|+|+||||||||+++|+|+++|++|++.+.|.+...... ..+.+........++.+
T Consensus 15 ~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~ 94 (230)
T TIGR03410 15 ILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAYVPQGREIFPRLTVEE 94 (230)
T ss_pred EecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeEEeccCCcccCCCcHHH
Confidence 5789999999999999999999999999999999999999999998865321110 01111111112234444
Q ss_pred ceeeeeeecC-----------------CCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHH
Q psy2071 138 EVGYSIRFED-----------------CSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLK 199 (302)
Q Consensus 138 ~v~~~~~~~~-----------------~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~ 199 (302)
++.+...... ....++.+..||+||+||++||++|+.+|+++|||| |++++|+.. ..+.
T Consensus 95 ~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~illlDE---Pt~~LD~~~~~~l~ 171 (230)
T TIGR03410 95 NLLTGLAALPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDE---PTEGIQPSIIKDIG 171 (230)
T ss_pred HHHHHHHhcCcchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecC---CcccCCHHHHHHHH
Confidence 4432211000 011244566799999999999999999999999999 999999887 7788
Q ss_pred HHHHHcCC-CcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 200 EVIKQRAD-LKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 200 ~ll~~~~~-~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
+++.+..+ .+.|++++||+++++..+||++++++ .|+.
T Consensus 172 ~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~-~g~i 210 (230)
T TIGR03410 172 RVIRRLRAEGGMAILLVEQYLDFARELADRYYVME-RGRV 210 (230)
T ss_pred HHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEE-CCEE
Confidence 88887654 47899999999999999999999998 6653
No 91
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=6.2e-32 Score=232.27 Aligned_cols=166 Identities=17% Similarity=0.214 Sum_probs=126.2
Q ss_pred HHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhH-----HHHHHHhhhhhccccccceeeee
Q psy2071 69 EFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAA-----MSVAQRVSEEMDCQLGQEVGYSI 143 (302)
Q Consensus 69 ~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~v~~~~ 143 (302)
++++.|.+|++++|+||||||||||+++|+|+++|++|++.+.|.+...... ..+.+........++.+++.+..
T Consensus 16 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~ 95 (211)
T cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVGLGL 95 (211)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHhccc
Confidence 7899999999999999999999999999999999999999998865422110 01111111122335555554332
Q ss_pred eec------------------C-CCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHH
Q psy2071 144 RFE------------------D-CSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVIK 203 (302)
Q Consensus 144 ~~~------------------~-~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~ 203 (302)
... . ....++.+..||+||+||++||+||+.+|++||||| |++++|+.. ..+.+++.
T Consensus 96 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~llllDE---P~~~LD~~~~~~l~~~l~ 172 (211)
T cd03298 96 SPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDE---PFAALDPALRAEMLDLVL 172 (211)
T ss_pred ccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcC---CcccCCHHHHHHHHHHHH
Confidence 110 0 001234556799999999999999999999999999 999999887 77888887
Q ss_pred HcC-CCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 204 QRA-DLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 204 ~~~-~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
+.. +.+.|+|++||+++++.++||++++|+ .|+.
T Consensus 173 ~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~-~G~i 207 (211)
T cd03298 173 DLHAETKMTVLMVTHQPEDAKRLAQRVVFLD-NGRI 207 (211)
T ss_pred HHHHhcCCEEEEEecCHHHHHhhhCEEEEEE-CCEE
Confidence 664 347899999999999999999999998 6653
No 92
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.97 E-value=3.5e-32 Score=239.74 Aligned_cols=170 Identities=18% Similarity=0.136 Sum_probs=127.9
Q ss_pred HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhh--------hHHHHH---HHhh----h
Q psy2071 65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRV--------AAMSVA---QRVS----E 129 (302)
Q Consensus 65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~--------~~~~~~---~~~~----~ 129 (302)
.+++++++.|++|++++|+|+||||||||+++|+|+++|++|++.+.|...... ...... ..+. .
T Consensus 17 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~ 96 (250)
T PRK11264 17 TVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQNFNL 96 (250)
T ss_pred eeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHHHhhhhEEEEecCccc
Confidence 357899999999999999999999999999999999999999999887643210 000001 1111 1
Q ss_pred hhccccccceeeeee--------------------ecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCc
Q psy2071 130 EMDCQLGQEVGYSIR--------------------FEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTL 189 (302)
Q Consensus 130 ~~~~~~~~~v~~~~~--------------------~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~ 189 (302)
....++.+++.+... +......++.+..||+||+||++||+||+.+|++||||| |++
T Consensus 97 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~la~al~~~p~lllLDE---Pt~ 173 (250)
T PRK11264 97 FPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDE---PTS 173 (250)
T ss_pred CCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHHHHHHHhcCCCEEEEeC---CCc
Confidence 112344444432100 000011245567799999999999999999999999999 999
Q ss_pred chHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 190 ATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 190 ~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
++|+.. ..+.+++....+.+.++|++||+.+.+.++||++++|+ .|+.
T Consensus 174 ~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~-~G~i 222 (250)
T PRK11264 174 ALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMD-QGRI 222 (250)
T ss_pred cCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEE-CCEE
Confidence 999887 77888887765558899999999999999999999998 6653
No 93
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.97 E-value=4e-32 Score=234.90 Aligned_cols=168 Identities=16% Similarity=0.183 Sum_probs=126.3
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhh--HHHHHHHhhh----hhccccccce
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVA--AMSVAQRVSE----EMDCQLGQEV 139 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~--~~~~~~~~~~----~~~~~~~~~v 139 (302)
+++++++.+++|++++|+||||||||||+++|+|+++|++|++.++|....... .......+.+ ....++.+++
T Consensus 17 il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l 96 (220)
T cd03263 17 AVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELTVREHL 96 (220)
T ss_pred eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEEecCcCCccccCCHHHHH
Confidence 578999999999999999999999999999999999999999999886532110 0000011111 1122333333
Q ss_pred eeeee-------------------ecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHH
Q psy2071 140 GYSIR-------------------FEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLK 199 (302)
Q Consensus 140 ~~~~~-------------------~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~ 199 (302)
.+... +......++.+..||+||+||++||+||+.+|++||||| |++++|+.. ..+.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDE---P~~~LD~~~~~~l~ 173 (220)
T cd03263 97 RFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDE---PTSGLDPASRRAIW 173 (220)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEECC---CCCCCCHHHHHHHH
Confidence 32110 000011244567799999999999999999999999999 999999887 7788
Q ss_pred HHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 200 EVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 200 ~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
+++....+ +.|+|++||+++.+.++||++++|+ .|+.
T Consensus 174 ~~l~~~~~-~~tii~~sH~~~~~~~~~d~i~~l~-~g~i 210 (220)
T cd03263 174 DLILEVRK-GRSIILTTHSMDEAEALCDRIAIMS-DGKL 210 (220)
T ss_pred HHHHHHhc-CCEEEEEcCCHHHHHHhcCEEEEEE-CCEE
Confidence 88887655 4899999999999999999999998 6653
No 94
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=4.8e-32 Score=232.94 Aligned_cols=166 Identities=14% Similarity=0.201 Sum_probs=126.3
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhh--HHHHHHHhhh----hhccccccce
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVA--AMSVAQRVSE----EMDCQLGQEV 139 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~--~~~~~~~~~~----~~~~~~~~~v 139 (302)
+.+++++.+++| +++|+||||||||||+++|+|+++|++|++.+.|.+..... .......+.+ ....++.+++
T Consensus 15 ~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l 93 (211)
T cd03264 15 ALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTVREFL 93 (211)
T ss_pred EEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhheEEecCCCcccccCCHHHHH
Confidence 578899999999 99999999999999999999999999999999886543211 0000011111 1123444444
Q ss_pred eeeeeec------------------C-CCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHH
Q psy2071 140 GYSIRFE------------------D-CSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLK 199 (302)
Q Consensus 140 ~~~~~~~------------------~-~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~ 199 (302)
.+...+. . ....++.+..||+||+||++||+||+.+|++||||| |++++|+.. ..+.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDE---Pt~~LD~~~~~~l~ 170 (211)
T cd03264 94 DYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDE---PTAGLDPEERIRFR 170 (211)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEcC---CcccCCHHHHHHHH
Confidence 3321100 0 011245667799999999999999999999999999 999999887 7888
Q ss_pred HHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCc
Q psy2071 200 EVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGR 237 (302)
Q Consensus 200 ~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~ 237 (302)
++++...+ +.|++++|||.+.+.++||++++|+ .|+
T Consensus 171 ~~l~~~~~-~~tii~vsH~~~~~~~~~d~i~~l~-~g~ 206 (211)
T cd03264 171 NLLSELGE-DRIVILSTHIVEDVESLCNQVAVLN-KGK 206 (211)
T ss_pred HHHHHHhC-CCEEEEEcCCHHHHHHhCCEEEEEE-CCE
Confidence 88887665 4899999999999999999999998 664
No 95
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.97 E-value=2.6e-31 Score=227.42 Aligned_cols=170 Identities=18% Similarity=0.236 Sum_probs=131.2
Q ss_pred hHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHH-------HHhhhhhccccc
Q psy2071 64 FEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVA-------QRVSEEMDCQLG 136 (302)
Q Consensus 64 ~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~-------~~~~~~~~~~~~ 136 (302)
..+.+||++.|++|++++++|+||+||||+|+++.|++.|++|.+.++|..|.+....... ++...++.....
T Consensus 37 ~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~~ 116 (325)
T COG4586 37 IEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPAL 116 (325)
T ss_pred hhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeechhh
Confidence 3478999999999999999999999999999999999999999999999988653211111 111111111111
Q ss_pred ccee-----eee-------------ee-cCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-H
Q psy2071 137 QEVG-----YSI-------------RF-EDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-G 196 (302)
Q Consensus 137 ~~v~-----~~~-------------~~-~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~ 196 (302)
+.+. |.+ .. +.....+.++..||.|||.|+.||.+|+++|++|+||| ||.++|... .
T Consensus 117 ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDE---pTvgLDV~aq~ 193 (325)
T COG4586 117 DSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDE---PTVGLDVNAQA 193 (325)
T ss_pred hhHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecC---CccCcchhHHH
Confidence 1111 111 00 01112356778899999999999999999999999999 999999888 7
Q ss_pred HHHHHHHHcC-CCcEEEEEEecCHHHHHhhccCCCeeeecCc
Q psy2071 197 VLKEVIKQRA-DLKLVIMSATLDAGKFQQYFDNAPLMNVPGR 237 (302)
Q Consensus 197 ~l~~ll~~~~-~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~ 237 (302)
.+++.+++.. +.+.||+.+||+++.+..+|++|.+|+ .|+
T Consensus 194 ~ir~Flke~n~~~~aTVllTTH~~~di~~lc~rv~~I~-~Gq 234 (325)
T COG4586 194 NIREFLKEYNEERQATVLLTTHIFDDIATLCDRVLLID-QGQ 234 (325)
T ss_pred HHHHHHHHHHHhhCceEEEEecchhhHHHhhhheEEee-CCc
Confidence 8999988765 458999999999999999999999999 554
No 96
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.97 E-value=3.5e-32 Score=250.62 Aligned_cols=175 Identities=14% Similarity=0.126 Sum_probs=131.8
Q ss_pred HHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhh-----------hHHHHHHHhhhhhcccccc
Q psy2071 69 EFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRV-----------AAMSVAQRVSEEMDCQLGQ 137 (302)
Q Consensus 69 ~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~ 137 (302)
++++.|++|++++|+||||||||||+++|+|+++|++|.+.+.|...... ....+.+........++.+
T Consensus 16 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e 95 (352)
T PRK11144 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKVRG 95 (352)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcHHH
Confidence 68999999999999999999999999999999999999999988643210 0001112222223446666
Q ss_pred ceeeeeee-------------cCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHH
Q psy2071 138 EVGYSIRF-------------EDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVIK 203 (302)
Q Consensus 138 ~v~~~~~~-------------~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~ 203 (302)
++.+.... ......++.+..|||||+||++|||||+.+|++||||| |++++|+.. ..+.++++
T Consensus 96 nl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~llLLDE---Pts~LD~~~~~~l~~~L~ 172 (352)
T PRK11144 96 NLRYGMAKSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDE---PLASLDLPRKRELLPYLE 172 (352)
T ss_pred HHHhhhhhhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcC---CcccCCHHHHHHHHHHHH
Confidence 66543211 00112345667899999999999999999999999999 999999887 77777777
Q ss_pred HcCC-CcEEEEEEecCHHHHHhhccCCCeeeecCcC----CccceeecC
Q psy2071 204 QRAD-LKLVIMSATLDAGKFQQYFDNAPLMNVPGRT----HPVEIFYTP 247 (302)
Q Consensus 204 ~~~~-~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~----~~~~~~~~~ 247 (302)
...+ .+.|+|++|||++++..+||++++|+ .|+. .|.+++..|
T Consensus 173 ~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~-~G~i~~~g~~~~i~~~p 220 (352)
T PRK11144 173 RLAREINIPILYVSHSLDEILRLADRVVVLE-QGKVKAFGPLEEVWASS 220 (352)
T ss_pred HHHHhcCCeEEEEecCHHHHHHhCCEEEEEe-CCEEEEecCHHHHHhCc
Confidence 6543 47899999999999999999999998 5553 444554444
No 97
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.97 E-value=1.7e-32 Score=253.31 Aligned_cols=174 Identities=17% Similarity=0.175 Sum_probs=132.0
Q ss_pred CChhHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeec----Cchhhh-----------HHHHHH
Q psy2071 61 LPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACT----QPRRVA-----------AMSVAQ 125 (302)
Q Consensus 61 lp~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~----~~~~~~-----------~~~~~~ 125 (302)
+.....++++++.|++|++++|+|+||||||||+++|+|+++|++|++.+.|. +..... ...+.+
T Consensus 34 ~g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ 113 (382)
T TIGR03415 34 TGLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQ 113 (382)
T ss_pred hCCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEEC
Confidence 44444678999999999999999999999999999999999999999999884 221110 001111
Q ss_pred HhhhhhccccccceeeeeeecC-------------------CCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCC
Q psy2071 126 RVSEEMDCQLGQEVGYSIRFED-------------------CSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHE 186 (302)
Q Consensus 126 ~~~~~~~~~~~~~v~~~~~~~~-------------------~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~ 186 (302)
........++.+++.+...+.. ....+..+..|||||+||++|||||+.+|++|||||
T Consensus 114 ~~~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLlDE--- 190 (382)
T TIGR03415 114 KFALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDADILLMDE--- 190 (382)
T ss_pred CCcCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEEC---
Confidence 1222233566666655432111 012244566799999999999999999999999999
Q ss_pred CCcchHHHH-HHHHHHHHHcC-CCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 187 RTLATDILM-GVLKEVIKQRA-DLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 187 p~~~lD~~~-~~l~~ll~~~~-~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
|++++|+.. ..+.+++.... +.+.|++++|||++++.++||++++|+ .|+.
T Consensus 191 Pts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~-~G~i 243 (382)
T TIGR03415 191 PFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIME-GGRI 243 (382)
T ss_pred CCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEE-CCEE
Confidence 999999888 67777776554 358999999999999999999999998 5543
No 98
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=2.7e-31 Score=220.95 Aligned_cols=152 Identities=17% Similarity=0.246 Sum_probs=119.0
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhhccccccceeeeeee
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRF 145 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 145 (302)
+.+++++.+++|++++|+||||||||||+++|+|+++|++|++.+.|.+.......... ..++|..+.
T Consensus 17 ~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~------------~~i~~~~~~ 84 (171)
T cd03228 17 VLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLR------------KNIAYVPQD 84 (171)
T ss_pred cccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHH------------hhEEEEcCC
Confidence 57889999999999999999999999999999999999999999988754322111111 122232221
Q ss_pred cCCCCccccccc-cCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHH
Q psy2071 146 EDCSSPKTVLKY-MTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQ 223 (302)
Q Consensus 146 ~~~~~~~~~~~~-lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~ 223 (302)
.... ..+..++ ||+||+||++||++++.+|++||||| |+.++|+.. ..+.+++.+..+ +.+++++||+.+.+.
T Consensus 85 ~~~~-~~t~~e~lLS~G~~~rl~la~al~~~p~llllDE---P~~gLD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~~~ 159 (171)
T cd03228 85 PFLF-SGTIRENILSGGQRQRIAIARALLRDPPILILDE---ATSALDPETEALILEALRALAK-GKTVIVIAHRLSTIR 159 (171)
T ss_pred chhc-cchHHHHhhCHHHHHHHHHHHHHhcCCCEEEEEC---CCcCCCHHHHHHHHHHHHHhcC-CCEEEEEecCHHHHH
Confidence 1111 1122222 99999999999999999999999999 999999887 778888887654 689999999999998
Q ss_pred hhccCCCeeeecC
Q psy2071 224 QYFDNAPLMNVPG 236 (302)
Q Consensus 224 ~~~d~~~~l~i~g 236 (302)
. ||++++|+ .|
T Consensus 160 ~-~d~~~~l~-~g 170 (171)
T cd03228 160 D-ADRIIVLD-DG 170 (171)
T ss_pred h-CCEEEEEc-CC
Confidence 7 99999987 44
No 99
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.97 E-value=6.1e-32 Score=234.92 Aligned_cols=169 Identities=17% Similarity=0.204 Sum_probs=126.0
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhH---HHH---HHHhhh------hhcc
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAA---MSV---AQRVSE------EMDC 133 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~---~~~---~~~~~~------~~~~ 133 (302)
+++++++.|++|++++|+||||||||||+++|+|+++|++|++.+.|.+...... ... ..++.+ ....
T Consensus 20 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~ 99 (228)
T cd03257 20 ALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRM 99 (228)
T ss_pred eecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhhccEEEEecCchhhcCCcC
Confidence 5789999999999999999999999999999999999999999998865432110 000 001111 1112
Q ss_pred ccccceeeee---------------------eecCC-CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcch
Q psy2071 134 QLGQEVGYSI---------------------RFEDC-SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLAT 191 (302)
Q Consensus 134 ~~~~~v~~~~---------------------~~~~~-~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~l 191 (302)
++.+++.+.. .+... ...+..+..||+||+||++||+||+.+|++||||| |++++
T Consensus 100 tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDE---Pt~~L 176 (228)
T cd03257 100 TIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALNPKLLIADE---PTSAL 176 (228)
T ss_pred CHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHHhcCCCEEEecC---CCCCC
Confidence 3333322110 01110 11244567799999999999999999999999999 99999
Q ss_pred HHHH-HHHHHHHHHcCCC-cEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 192 DILM-GVLKEVIKQRADL-KLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 192 D~~~-~~l~~ll~~~~~~-~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
|+.. ..+.+++.+..+. +.|||++||+++.+..+||++++|+ .|+.
T Consensus 177 D~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~-~G~i 224 (228)
T cd03257 177 DVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMY-AGKI 224 (228)
T ss_pred CHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEe-CCEE
Confidence 9887 7788888766543 7899999999999999999999998 6653
No 100
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=7.8e-32 Score=242.34 Aligned_cols=169 Identities=14% Similarity=0.145 Sum_probs=129.3
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchh----hhHHHH---HHHhhh-----hhcc
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRR----VAAMSV---AQRVSE-----EMDC 133 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~----~~~~~~---~~~~~~-----~~~~ 133 (302)
+++++++.|++|++++|+|+||||||||+++|+|+++|++|++.++|..... ...... ...+.+ .+..
T Consensus 22 ~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~ 101 (290)
T PRK13634 22 ALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFEE 101 (290)
T ss_pred ceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhhEEEEeeCchhhhhhh
Confidence 6789999999999999999999999999999999999999999999875421 000000 011111 1123
Q ss_pred ccccceeeeee------------------ecCC--CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHH
Q psy2071 134 QLGQEVGYSIR------------------FEDC--SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDI 193 (302)
Q Consensus 134 ~~~~~v~~~~~------------------~~~~--~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~ 193 (302)
++.+++.+... .... ...++.+..||+||+||++||+||+.+|++||||| ||+++|+
T Consensus 102 tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~~~P~llllDE---Pt~~LD~ 178 (290)
T PRK13634 102 TVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDE---PTAGLDP 178 (290)
T ss_pred hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEEC---CcccCCH
Confidence 44444433211 0011 11345678899999999999999999999999999 9999998
Q ss_pred HH-HHHHHHHHHcCC-CcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 194 LM-GVLKEVIKQRAD-LKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 194 ~~-~~l~~ll~~~~~-~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
.. ..+.+++....+ .|.|||++|||++++..+||++++|+ .|+.
T Consensus 179 ~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~-~G~i 224 (290)
T PRK13634 179 KGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMH-KGTV 224 (290)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEE-CCEE
Confidence 87 778888877644 48999999999999999999999998 6663
No 101
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=3.1e-32 Score=240.75 Aligned_cols=170 Identities=14% Similarity=0.116 Sum_probs=128.7
Q ss_pred HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhh--------HHHHHHHhhhhhccccc
Q psy2071 65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVA--------AMSVAQRVSEEMDCQLG 136 (302)
Q Consensus 65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~--------~~~~~~~~~~~~~~~~~ 136 (302)
.+++++++.|++|++++|+|+||||||||+++|+|+++|++|++.++|....... ...+.+........++.
T Consensus 19 ~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 98 (255)
T PRK11300 19 LAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGVVRTFQHVRLFREMTVI 98 (255)
T ss_pred EEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCeEEeccCcccCCCCcHH
Confidence 4678999999999999999999999999999999999999999999887543211 00011111112223444
Q ss_pred cceeeeee----------------------------------ecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEc
Q psy2071 137 QEVGYSIR----------------------------------FEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLD 182 (302)
Q Consensus 137 ~~v~~~~~----------------------------------~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLD 182 (302)
+++.+... +......++.+..||+||+||++||+||+.+|++||||
T Consensus 99 enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllD 178 (255)
T PRK11300 99 ENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQRRLEIARCMVTQPEILMLD 178 (255)
T ss_pred HHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 44432100 00001123455669999999999999999999999999
Q ss_pred CCCCCCcchHHHH-HHHHHHHHHcCC-CcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 183 EAHERTLATDILM-GVLKEVIKQRAD-LKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 183 E~~~p~~~lD~~~-~~l~~ll~~~~~-~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
| |++++|+.. ..+.+++.+..+ .+.|||++||+++++.++||++++|+ .|+.
T Consensus 179 E---Pt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~-~g~i 232 (255)
T PRK11300 179 E---PAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVN-QGTP 232 (255)
T ss_pred C---CccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEE-CCeE
Confidence 9 999999887 778888877654 37899999999999999999999998 6653
No 102
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.97 E-value=5.3e-32 Score=237.23 Aligned_cols=169 Identities=16% Similarity=0.132 Sum_probs=128.7
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhh--hHHH-------HHHHhhhhhccccc
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRV--AAMS-------VAQRVSEEMDCQLG 136 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~--~~~~-------~~~~~~~~~~~~~~ 136 (302)
+.+++++.+++|++++|+|+||||||||+++|+|+++|++|++.++|.+.... .... +.+........++.
T Consensus 16 il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 95 (240)
T PRK09493 16 VLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTAL 95 (240)
T ss_pred EeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhceEEEecccccCCCCcHH
Confidence 57899999999999999999999999999999999999999999988654321 0001 11111111223444
Q ss_pred cceeeeee-e-------------------cCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-
Q psy2071 137 QEVGYSIR-F-------------------EDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM- 195 (302)
Q Consensus 137 ~~v~~~~~-~-------------------~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~- 195 (302)
+++.+... . ......+..+..||+||+||++||+||+.+|+++|||| |++++|+..
T Consensus 96 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDE---P~~~LD~~~~ 172 (240)
T PRK09493 96 ENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDE---PTSALDPELR 172 (240)
T ss_pred HHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcCCCEEEEcC---CcccCCHHHH
Confidence 44433210 0 00011234556799999999999999999999999999 999999887
Q ss_pred HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 196 GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 196 ~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
..+.+++....+.+.|+|++||+.+++..+||++++|+ .|+.
T Consensus 173 ~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~-~G~i 214 (240)
T PRK09493 173 HEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFID-KGRI 214 (240)
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEE-CCEE
Confidence 77888888765558899999999999999999999998 6764
No 103
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.97 E-value=9.9e-32 Score=233.55 Aligned_cols=169 Identities=17% Similarity=0.208 Sum_probs=127.6
Q ss_pred HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcc-----cccCCCEEEeecCchhhh--HHHHHH---Hhhh---hh
Q psy2071 65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEY-----SKSVGAKAVACTQPRRVA--AMSVAQ---RVSE---EM 131 (302)
Q Consensus 65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~-----~~~~G~~~i~~~~~~~~~--~~~~~~---~~~~---~~ 131 (302)
.+++++++.|++|++++|+|+||||||||+++|+|++ +|++|++.+.|.+..... ...... .+.+ ..
T Consensus 14 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 93 (227)
T cd03260 14 HALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPF 93 (227)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHHHhhEEEEecCchhc
Confidence 3578899999999999999999999999999999999 999999999886543211 011111 1111 11
Q ss_pred ccccccceeeeeee-------------------cCCC-Ccccc--ccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCc
Q psy2071 132 DCQLGQEVGYSIRF-------------------EDCS-SPKTV--LKYMTDGMLLREGMSDPMLENYQVILLDEAHERTL 189 (302)
Q Consensus 132 ~~~~~~~v~~~~~~-------------------~~~~-~~~~~--~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~ 189 (302)
..++.+++.+.... .... ..+.. ...||+||+||++||+||+.+|++||||| |++
T Consensus 94 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDE---Pt~ 170 (227)
T cd03260 94 PGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDE---PTS 170 (227)
T ss_pred cccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC---CCc
Confidence 23444444322110 0000 11233 47899999999999999999999999999 999
Q ss_pred chHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 190 ATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 190 ~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
++|+.. ..+.+++.+..+. .|||++|||++.+..+||++++|+ .|+.
T Consensus 171 ~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~~~~~~~d~i~~l~-~G~i 218 (227)
T cd03260 171 ALDPISTAKIEELIAELKKE-YTIVIVTHNMQQAARVADRTAFLL-NGRL 218 (227)
T ss_pred cCCHHHHHHHHHHHHHHhhC-cEEEEEeccHHHHHHhCCEEEEEe-CCEE
Confidence 999887 7888888877655 899999999999999999999998 6653
No 104
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=4e-32 Score=247.58 Aligned_cols=170 Identities=16% Similarity=0.159 Sum_probs=126.9
Q ss_pred HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHH---HH---HHHhhhh------hc
Q psy2071 65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAM---SV---AQRVSEE------MD 132 (302)
Q Consensus 65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~---~~---~~~~~~~------~~ 132 (302)
.++++|++.|++|++++|+|+||||||||+++|+|+++|++|++.+.|.+....... .. ...+.+. ..
T Consensus 29 ~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~ 108 (327)
T PRK11308 29 KALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGSLNPR 108 (327)
T ss_pred eEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCchhhcCCc
Confidence 358999999999999999999999999999999999999999999998654321110 00 0111111 11
Q ss_pred cccccceeeeeee-------------------cCC--CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcch
Q psy2071 133 CQLGQEVGYSIRF-------------------EDC--SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLAT 191 (302)
Q Consensus 133 ~~~~~~v~~~~~~-------------------~~~--~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~l 191 (302)
.++++++.+.+.. ... ...++.+..|||||+||++||+||+.+|++||+|| ||+++
T Consensus 109 ~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QRv~iArAL~~~P~lLilDE---Pts~L 185 (327)
T PRK11308 109 KKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADE---PVSAL 185 (327)
T ss_pred cCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHHHHHHHHHHcCCCEEEEEC---CCccC
Confidence 2222222211100 001 01245567899999999999999999999999999 99999
Q ss_pred HHHH-HHHHHHHHHcCC-CcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 192 DILM-GVLKEVIKQRAD-LKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 192 D~~~-~~l~~ll~~~~~-~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
|... ..+.+++.+..+ .+.|+|++|||++.+..+||++++|+ .|+.
T Consensus 186 D~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~-~G~i 233 (327)
T PRK11308 186 DVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMY-LGRC 233 (327)
T ss_pred CHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEE-CCEE
Confidence 9887 677777776543 58999999999999999999999998 5554
No 105
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.97 E-value=6.5e-31 Score=209.99 Aligned_cols=173 Identities=16% Similarity=0.164 Sum_probs=140.6
Q ss_pred hHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhh------hhhcccccc
Q psy2071 64 FEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVS------EEMDCQLGQ 137 (302)
Q Consensus 64 ~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~------~~~~~~~~~ 137 (302)
..++++|++++.+||.++|+||+|||||||+++++.+++|++|.+.+.|........-...++++ ..++.++.+
T Consensus 16 a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~tVeD 95 (223)
T COG4619 16 AKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTVED 95 (223)
T ss_pred CeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCccccccchhh
Confidence 34588999999999999999999999999999999999999999999998764433322333332 245678888
Q ss_pred ceeeeeeecCCC------------------CccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHH
Q psy2071 138 EVGYSIRFEDCS------------------SPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVL 198 (302)
Q Consensus 138 ~v~~~~~~~~~~------------------~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l 198 (302)
|+-|..+..... ...+.+..||||++||++|+|.|..-|++|+||| +|+++|+.. ..+
T Consensus 96 NlifP~~~r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE---~TsALD~~nkr~i 172 (223)
T COG4619 96 NLIFPWQIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDE---ITSALDESNKRNI 172 (223)
T ss_pred ccccchHHhccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecC---chhhcChhhHHHH
Confidence 887776443321 1234567799999999999999999999999999 999999988 778
Q ss_pred HHHHHHc-CCCcEEEEEEecCHHHHHhhccCCCeeeecCcCCc
Q psy2071 199 KEVIKQR-ADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRTHP 240 (302)
Q Consensus 199 ~~ll~~~-~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~~~ 240 (302)
.+++..+ .++.+.++.+|||-+.+.+.+|+++-+. +|....
T Consensus 173 e~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~-~G~~~~ 214 (223)
T COG4619 173 EEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQ-PGHAGE 214 (223)
T ss_pred HHHHHHHhhhhceEEEEEecChHHHhhhhheEEEec-cCcccc
Confidence 8887765 3778999999999999999999998887 665433
No 106
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.97 E-value=5.5e-32 Score=234.18 Aligned_cols=167 Identities=14% Similarity=0.121 Sum_probs=124.5
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHH-------HHHHHhhh----hhccc
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAM-------SVAQRVSE----EMDCQ 134 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~-------~~~~~~~~----~~~~~ 134 (302)
+++++++.|++|++++|+||||||||||+++|+|+++|++|++.+.|.+....... ....++.+ ....+
T Consensus 20 ~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 99 (221)
T TIGR02211 20 VLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLPDFT 99 (221)
T ss_pred eEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHHHhcEEEEecccccCCCCc
Confidence 56889999999999999999999999999999999999999999988654221100 00011111 11234
Q ss_pred cccceeeeeee-------------------cCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH
Q psy2071 135 LGQEVGYSIRF-------------------EDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM 195 (302)
Q Consensus 135 ~~~~v~~~~~~-------------------~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~ 195 (302)
+.+++.+.... ......++.+..||+||+||++||++|+.+|++||||| |++++|+..
T Consensus 100 v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDE---Pt~~LD~~~ 176 (221)
T TIGR02211 100 ALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQPSLVLADE---PTGNLDNNN 176 (221)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeC---CCCcCCHHH
Confidence 44444331100 00011244567799999999999999999999999999 999999887
Q ss_pred -HHHHHHHHHcCC-CcEEEEEEecCHHHHHhhccCCCeeeecCc
Q psy2071 196 -GVLKEVIKQRAD-LKLVIMSATLDAGKFQQYFDNAPLMNVPGR 237 (302)
Q Consensus 196 -~~l~~ll~~~~~-~~~~ii~~thd~~~~~~~~d~~~~l~i~g~ 237 (302)
..+.+++....+ .+.|+|++|||++.+.. +|++++|+ .|+
T Consensus 177 ~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~-~d~v~~l~-~G~ 218 (221)
T TIGR02211 177 AKIIFDLMLELNRELNTSFLVVTHDLELAKK-LDRVLEMK-DGQ 218 (221)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEeCCHHHHhh-cCEEEEEe-CCE
Confidence 778888876643 47899999999998864 79999998 664
No 107
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=1.2e-31 Score=243.68 Aligned_cols=169 Identities=13% Similarity=0.117 Sum_probs=129.5
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhh----------------hHHHHHH---H
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRV----------------AAMSVAQ---R 126 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~----------------~~~~~~~---~ 126 (302)
+++++++.|++|++++|+|+||||||||+++|+|+++|++|+|.+.|...... ....... .
T Consensus 41 ~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~ 120 (320)
T PRK13631 41 ALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRVSM 120 (320)
T ss_pred ceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccccccccccccccchHHHHHhcEEE
Confidence 68999999999999999999999999999999999999999999988543211 0111111 1
Q ss_pred hhh-----hhccccccceeeeeeec------------------CC--CCccccccccCHHHHHHHhccccCCCCCcEEEE
Q psy2071 127 VSE-----EMDCQLGQEVGYSIRFE------------------DC--SSPKTVLKYMTDGMLLREGMSDPMLENYQVILL 181 (302)
Q Consensus 127 ~~~-----~~~~~~~~~v~~~~~~~------------------~~--~~~~~~~~~lS~G~~qr~~la~al~~~p~lliL 181 (302)
+.+ .+..++.+++.+..... .. ...++....|||||+||++|||||+.+|++|||
T Consensus 121 v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqRvaiAraL~~~p~iLLL 200 (320)
T PRK13631 121 VFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLSGGQKRRVAIAGILAIQPEILIF 200 (320)
T ss_pred EEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 111 12235555554332100 01 012445667999999999999999999999999
Q ss_pred cCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 182 DEAHERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 182 DE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
|| ||+++|+.. ..+.+++....+.+.|||++|||++.+..+||++++|+ .|+.
T Consensus 201 DE---PtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~-~G~i 254 (320)
T PRK13631 201 DE---PTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMD-KGKI 254 (320)
T ss_pred EC---CccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEE-CCEE
Confidence 99 999999887 77888887665558899999999999999999999998 6653
No 108
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=4.6e-32 Score=252.12 Aligned_cols=169 Identities=15% Similarity=0.188 Sum_probs=130.1
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHH-----------HHHHHhhhhhccc
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAM-----------SVAQRVSEEMDCQ 134 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~-----------~~~~~~~~~~~~~ 134 (302)
.++++++.|++|++++|+||||||||||+++|+|+++|++|++.++|.+....... .+.+........+
T Consensus 43 ~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~T 122 (400)
T PRK10070 43 GVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMT 122 (400)
T ss_pred EEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCC
Confidence 47899999999999999999999999999999999999999999998754321110 1111111122345
Q ss_pred cccceeeeeeec-------------------CCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH
Q psy2071 135 LGQEVGYSIRFE-------------------DCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM 195 (302)
Q Consensus 135 ~~~~v~~~~~~~-------------------~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~ 195 (302)
+.+++.+..... .....++.+..|||||+||++|||||+.+|++||||| |++++|+..
T Consensus 123 v~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDE---Pts~LD~~~ 199 (400)
T PRK10070 123 VLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDE---AFSALDPLI 199 (400)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEEC---CCccCCHHH
Confidence 555555432110 0112345567899999999999999999999999999 999999888
Q ss_pred -HHHHHHHHHcC-CCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 196 -GVLKEVIKQRA-DLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 196 -~~l~~ll~~~~-~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
..+.+++.... +.+.|||++|||++++..+||++++|+ .|+.
T Consensus 200 r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~-~G~i 243 (400)
T PRK10070 200 RTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQ-NGEV 243 (400)
T ss_pred HHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEE-CCEE
Confidence 77888877654 358899999999999999999999998 5543
No 109
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=8.3e-32 Score=241.77 Aligned_cols=169 Identities=18% Similarity=0.181 Sum_probs=129.1
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhh-------hHHHHHHHhhh-----hhcc
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRV-------AAMSVAQRVSE-----EMDC 133 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~-------~~~~~~~~~~~-----~~~~ 133 (302)
+++++++.|++|++++|+|+||||||||+++|+|+++|+.|++.++|...... ........+.+ .+..
T Consensus 22 ~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~ 101 (286)
T PRK13646 22 AIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFED 101 (286)
T ss_pred ceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhheEEEecChHhccchh
Confidence 68999999999999999999999999999999999999999999988653210 00101111111 1112
Q ss_pred ccccceeeeeee------------------cCC--CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHH
Q psy2071 134 QLGQEVGYSIRF------------------EDC--SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDI 193 (302)
Q Consensus 134 ~~~~~v~~~~~~------------------~~~--~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~ 193 (302)
++.+++.+.... ... ...++.+..||+||+||++||+||+.+|++||||| |++++|+
T Consensus 102 tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL~~~p~illlDE---Pt~~LD~ 178 (286)
T PRK13646 102 TVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDE---PTAGLDP 178 (286)
T ss_pred hHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEEC---CcccCCH
Confidence 444444432100 011 11245677899999999999999999999999999 9999998
Q ss_pred HH-HHHHHHHHHcCC-CcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 194 LM-GVLKEVIKQRAD-LKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 194 ~~-~~l~~ll~~~~~-~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
.. ..+.+++.+..+ .+.||+++|||++++..+||++++|+ .|+.
T Consensus 179 ~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~-~G~i 224 (286)
T PRK13646 179 QSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMK-EGSI 224 (286)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEE-CCEE
Confidence 88 778888887643 58999999999999999999999998 6653
No 110
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=1e-31 Score=240.23 Aligned_cols=169 Identities=16% Similarity=0.172 Sum_probs=129.4
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHH---HHhhh-----hhcccccc
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVA---QRVSE-----EMDCQLGQ 137 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~---~~~~~-----~~~~~~~~ 137 (302)
+++++++.|++|++++|+|+||||||||+++|+|+++|++|++.+.|.+.......... ..+.+ ....++.+
T Consensus 19 ~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~ 98 (277)
T PRK13652 19 ALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSPTVEQ 98 (277)
T ss_pred eeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheEEEecCcccccccccHHH
Confidence 57899999999999999999999999999999999999999999988754321111111 11111 11234444
Q ss_pred ceeeeee---e----------------cCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HH
Q psy2071 138 EVGYSIR---F----------------EDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GV 197 (302)
Q Consensus 138 ~v~~~~~---~----------------~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~ 197 (302)
++.+... + ......++.+..||+||+||++||+||+.+|++||||| |++++|+.. ..
T Consensus 99 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p~llilDE---Pt~gLD~~~~~~ 175 (277)
T PRK13652 99 DIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDE---PTAGLDPQGVKE 175 (277)
T ss_pred HHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC---CcccCCHHHHHH
Confidence 4432211 0 00012345567899999999999999999999999999 999999887 77
Q ss_pred HHHHHHHcCC-CcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 198 LKEVIKQRAD-LKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 198 l~~ll~~~~~-~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
+.+++.+..+ .+.|||++||+++++.++||++++|+ .|+.
T Consensus 176 l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~-~G~i 216 (277)
T PRK13652 176 LIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMD-KGRI 216 (277)
T ss_pred HHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEE-CCeE
Confidence 8888876654 48999999999999999999999998 6664
No 111
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.97 E-value=2.1e-31 Score=223.93 Aligned_cols=170 Identities=13% Similarity=0.112 Sum_probs=134.7
Q ss_pred hhHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHH----------HHHhhhhhc
Q psy2071 63 VFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSV----------AQRVSEEMD 132 (302)
Q Consensus 63 ~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~----------~~~~~~~~~ 132 (302)
..+++.++++.+++||+++|+|+||+||||++++|+|+.++.+|+|.+.|.+..+...-.. ..++ +..
T Consensus 15 ~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR~i--F~~ 92 (237)
T COG0410 15 KIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGIAYVPEGRRI--FPR 92 (237)
T ss_pred ceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCeEeCcccccc--hhh
Confidence 3456889999999999999999999999999999999999999999999987544322211 1222 234
Q ss_pred cccccceeeeeeecCC-------------------CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHH
Q psy2071 133 CQLGQEVGYSIRFEDC-------------------SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDI 193 (302)
Q Consensus 133 ~~~~~~v~~~~~~~~~-------------------~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~ 193 (302)
.++.+|+......... ...+++...|||||+|.++|||||+.+|++|+||| |+.++-|
T Consensus 93 LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~PklLLLDE---Ps~GLaP 169 (237)
T COG0410 93 LTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDE---PSEGLAP 169 (237)
T ss_pred CcHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCCEEEecC---CccCcCH
Confidence 5666665432111100 01234556699999999999999999999999999 9999999
Q ss_pred HH-HHHHHHHHHcC-CCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 194 LM-GVLKEVIKQRA-DLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 194 ~~-~~l~~ll~~~~-~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
.. +.+.+.++..+ +.++||+.+.++...+.+++||.++|. .|+.
T Consensus 170 ~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle-~Gri 215 (237)
T COG0410 170 KIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLE-NGRI 215 (237)
T ss_pred HHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEe-CCEE
Confidence 88 88888888776 458999999999999999999999998 6763
No 112
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=6.4e-32 Score=238.64 Aligned_cols=163 Identities=16% Similarity=0.143 Sum_probs=123.7
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchh----hhHHHHHHHhhhhhccccccceee
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRR----VAAMSVAQRVSEEMDCQLGQEVGY 141 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~----~~~~~~~~~~~~~~~~~~~~~v~~ 141 (302)
+.+++++.|++|++++|+||||||||||+++|+|+++|++|++.+.|.+... ++... +........++.+++.+
T Consensus 16 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~--q~~~~~~~~tv~e~l~~ 93 (255)
T PRK11248 16 ALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGVVF--QNEGLLPWRNVQDNVAF 93 (255)
T ss_pred eEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCCcEEEEe--CCCccCCCCcHHHHHHh
Confidence 5788999999999999999999999999999999999999999998765321 11111 11011111233333322
Q ss_pred eee-------------------ecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHH
Q psy2071 142 SIR-------------------FEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEV 201 (302)
Q Consensus 142 ~~~-------------------~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~l 201 (302)
... +......++.+..||+||+||++||++|+.+|++||||| |++++|+.. ..+.++
T Consensus 94 ~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDE---Pt~~LD~~~~~~l~~~ 170 (255)
T PRK11248 94 GLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDE---PFGALDAFTREQMQTL 170 (255)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC---CCccCCHHHHHHHHHH
Confidence 110 000011234567799999999999999999999999999 999999887 778888
Q ss_pred HHHc-CCCcEEEEEEecCHHHHHhhccCCCeee
Q psy2071 202 IKQR-ADLKLVIMSATLDAGKFQQYFDNAPLMN 233 (302)
Q Consensus 202 l~~~-~~~~~~ii~~thd~~~~~~~~d~~~~l~ 233 (302)
+... .+.+.|||++|||++.+..+||++++|+
T Consensus 171 L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~ 203 (255)
T PRK11248 171 LLKLWQETGKQVLLITHDIEEAVFMATELVLLS 203 (255)
T ss_pred HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEe
Confidence 8765 3457899999999999999999999997
No 113
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=1.9e-31 Score=238.61 Aligned_cols=168 Identities=17% Similarity=0.186 Sum_probs=129.0
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHH-------HHHh-hhhhcccccc
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSV-------AQRV-SEEMDCQLGQ 137 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~-------~~~~-~~~~~~~~~~ 137 (302)
+++++++.|++|++++|+|+||||||||+++|+|+++|++|++.+.|........... .+.. ......++.+
T Consensus 22 ~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e 101 (279)
T PRK13650 22 TLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVED 101 (279)
T ss_pred eeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhceEEEcChHHhcccccHHH
Confidence 5789999999999999999999999999999999999999999999876432111111 1111 1122345566
Q ss_pred ceeeeeeecC-------------------CCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HH
Q psy2071 138 EVGYSIRFED-------------------CSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GV 197 (302)
Q Consensus 138 ~v~~~~~~~~-------------------~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~ 197 (302)
++.+...... ....+..+..||+||+||++||+||+.+|++||||| |++++|+.. ..
T Consensus 102 ni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDE---Pt~~LD~~~~~~ 178 (279)
T PRK13650 102 DVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDE---ATSMLDPEGRLE 178 (279)
T ss_pred HHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEEC---CcccCCHHHHHH
Confidence 6554321100 011244567799999999999999999999999999 999999887 77
Q ss_pred HHHHHHHcCC-CcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 198 LKEVIKQRAD-LKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 198 l~~ll~~~~~-~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
+.+++....+ .|.||+++||+++.+ .+||++++|+ .|+.
T Consensus 179 l~~~l~~l~~~~g~tilivtH~~~~~-~~~dri~~l~-~G~i 218 (279)
T PRK13650 179 LIKTIKGIRDDYQMTVISITHDLDEV-ALSDRVLVMK-NGQV 218 (279)
T ss_pred HHHHHHHHHHhcCCEEEEEecCHHHH-HhCCEEEEEE-CCEE
Confidence 8888876654 489999999999998 5899999998 6664
No 114
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=6.1e-32 Score=236.40 Aligned_cols=169 Identities=16% Similarity=0.197 Sum_probs=127.5
Q ss_pred HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHH----HHHHHhhh----hhccccc
Q psy2071 65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAM----SVAQRVSE----EMDCQLG 136 (302)
Q Consensus 65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~----~~~~~~~~----~~~~~~~ 136 (302)
.+++++++.|++|++++|+|+||||||||+++|+|+++|++|++.+.|.+....... .....+.+ ....++.
T Consensus 19 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 98 (237)
T PRK11614 19 QALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSRMTVE 98 (237)
T ss_pred eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCEEEeccCcccCCCCcHH
Confidence 357899999999999999999999999999999999999999999988654221100 00011111 1123444
Q ss_pred cceeeeeeec------------------CCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HH
Q psy2071 137 QEVGYSIRFE------------------DCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GV 197 (302)
Q Consensus 137 ~~v~~~~~~~------------------~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~ 197 (302)
+++.+..... .....++.+..||+||+||++||++|+.+|++||||| |++++|+.. ..
T Consensus 99 ~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~illlDE---Pt~~LD~~~~~~ 175 (237)
T PRK11614 99 ENLAMGGFFAERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDE---PSLGLAPIIIQQ 175 (237)
T ss_pred HHHHHhhhccChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEEEEcC---ccccCCHHHHHH
Confidence 4443211000 0001234556799999999999999999999999999 999999887 77
Q ss_pred HHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCc
Q psy2071 198 LKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGR 237 (302)
Q Consensus 198 l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~ 237 (302)
+.+++.+..+.+.|+|++||+++++.++||++++|+ .|+
T Consensus 176 l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~-~G~ 214 (237)
T PRK11614 176 IFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLE-NGH 214 (237)
T ss_pred HHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEe-CCE
Confidence 888887765558899999999999999999999998 665
No 115
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=6e-32 Score=237.15 Aligned_cols=169 Identities=19% Similarity=0.221 Sum_probs=127.9
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHH-------HHHHhhhhhccccccc
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMS-------VAQRVSEEMDCQLGQE 138 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~ 138 (302)
+++++++.|++|++++|+||||||||||+++|+|+++|++|++.++|.+........ +.+........++.++
T Consensus 16 ~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~ 95 (242)
T cd03295 16 AVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEEN 95 (242)
T ss_pred EeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEEEccCccccCCCcHHHH
Confidence 578899999999999999999999999999999999999999999886532211100 1111111112344444
Q ss_pred eeeeee------------------ecCCC---CccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-H
Q psy2071 139 VGYSIR------------------FEDCS---SPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-G 196 (302)
Q Consensus 139 v~~~~~------------------~~~~~---~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~ 196 (302)
+.+... ..... ..++.+..||+||+||++||+||+.+|++||||| |++++|+.. .
T Consensus 96 l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE---Pt~~LD~~~~~ 172 (242)
T cd03295 96 IALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDE---PFGALDPITRD 172 (242)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEEEecC---CcccCCHHHHH
Confidence 432110 00111 2245567899999999999999999999999999 999999887 7
Q ss_pred HHHHHHHHcCC-CcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 197 VLKEVIKQRAD-LKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 197 ~l~~ll~~~~~-~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
.+.+++....+ .+.+||++||+.+.+..+||++++|+ .|+.
T Consensus 173 ~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~-~G~i 214 (242)
T cd03295 173 QLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMK-NGEI 214 (242)
T ss_pred HHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEE-CCEE
Confidence 78888876644 47899999999999999999999998 7764
No 116
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.96 E-value=1.2e-31 Score=232.55 Aligned_cols=169 Identities=15% Similarity=0.158 Sum_probs=126.4
Q ss_pred CChhHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhhcccccccee
Q psy2071 61 LPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVG 140 (302)
Q Consensus 61 lp~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 140 (302)
+....+++++++.|++|++++|+|+||||||||+++|+|+++|++|++.+.|........ ........++.+++.
T Consensus 32 ~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~-----~~~~~~~~tv~enl~ 106 (224)
T cd03220 32 VGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLLGL-----GGGFNPELTGRENIY 106 (224)
T ss_pred cCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhhcc-----cccCCCCCcHHHHHH
Confidence 333446899999999999999999999999999999999999999999998754221100 000001111111111
Q ss_pred e------------------eeee-cCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHH
Q psy2071 141 Y------------------SIRF-EDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKE 200 (302)
Q Consensus 141 ~------------------~~~~-~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ 200 (302)
+ .... ......++.+..||+||+||++||++++.+|++||||| |++++|+.. ..+.+
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDE---P~~gLD~~~~~~~~~ 183 (224)
T cd03220 107 LNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDE---VLAVGDAAFQEKCQR 183 (224)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC---CcccCCHHHHHHHHH
Confidence 1 0001 11112345678899999999999999999999999999 999999887 67777
Q ss_pred HHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 201 VIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 201 ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
++....+.+.|||++||+.+++..+||++.+|+ .|+.
T Consensus 184 ~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~-~G~i 220 (224)
T cd03220 184 RLRELLKQGKTVILVSHDPSSIKRLCDRALVLE-KGKI 220 (224)
T ss_pred HHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEE-CCEE
Confidence 877655457899999999999999999999998 6653
No 117
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.96 E-value=9.8e-32 Score=235.79 Aligned_cols=169 Identities=13% Similarity=0.140 Sum_probs=127.9
Q ss_pred HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHH--------HHHHHhhhhhccccc
Q psy2071 65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAM--------SVAQRVSEEMDCQLG 136 (302)
Q Consensus 65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~--------~~~~~~~~~~~~~~~ 136 (302)
.+++++++.|++|++++|+|+||||||||+++|+|+++|++|++.++|.+....... .+.+........++.
T Consensus 16 ~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 95 (242)
T TIGR03411 16 KALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFENLTVF 95 (242)
T ss_pred EEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCeeEeccccccCCCCCHH
Confidence 467899999999999999999999999999999999999999999998654221100 011111111123444
Q ss_pred cceeeeee---------------------------ecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCc
Q psy2071 137 QEVGYSIR---------------------------FEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTL 189 (302)
Q Consensus 137 ~~v~~~~~---------------------------~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~ 189 (302)
+++.+... +......++.+..||+||+||++||+|++.+|++||||| |++
T Consensus 96 ~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~laral~~~p~~lllDE---Pt~ 172 (242)
T TIGR03411 96 ENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDE---PVA 172 (242)
T ss_pred HHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecC---Ccc
Confidence 43332110 000011244567799999999999999999999999999 999
Q ss_pred chHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 190 ATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 190 ~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
++|+.. ..+.++++...+ +.|+|++||+++++..+||++++|+ .|+.
T Consensus 173 ~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~~~~~~~d~i~~l~-~g~~ 220 (242)
T TIGR03411 173 GMTDEETEKTAELLKSLAG-KHSVVVVEHDMEFVRSIADKVTVLH-QGSV 220 (242)
T ss_pred CCCHHHHHHHHHHHHHHhc-CCEEEEEECCHHHHHHhCCEEEEEE-CCeE
Confidence 999887 778888887655 5799999999999999999999998 6664
No 118
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=7.7e-32 Score=236.47 Aligned_cols=170 Identities=17% Similarity=0.148 Sum_probs=128.3
Q ss_pred HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCch------hhh---HH----HHHHHhhhhh
Q psy2071 65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPR------RVA---AM----SVAQRVSEEM 131 (302)
Q Consensus 65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~------~~~---~~----~~~~~~~~~~ 131 (302)
.+.+++++.+++|++++|+||||||||||+++|+|+++|++|++.+.|.+.. ... .. .+.+......
T Consensus 16 ~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 95 (242)
T PRK11124 16 QALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYNLWP 95 (242)
T ss_pred eeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHHHhheEEEecCccccC
Confidence 3578999999999999999999999999999999999999999999886531 000 00 0111111111
Q ss_pred ccccccceeeee--------------------eecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcch
Q psy2071 132 DCQLGQEVGYSI--------------------RFEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLAT 191 (302)
Q Consensus 132 ~~~~~~~v~~~~--------------------~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~l 191 (302)
..++.+++.+.. .+......++.+..||+||+||++||+||+.+|+++|||| |++++
T Consensus 96 ~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDE---Pt~~L 172 (242)
T PRK11124 96 HLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDE---PTAAL 172 (242)
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC---CCCcC
Confidence 234444443210 0000012244567799999999999999999999999999 99999
Q ss_pred HHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 192 DILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 192 D~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
|+.. ..+.+++++..+.+.|++++||+.+++.++||++++|. .|+.
T Consensus 173 D~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~-~g~i 219 (242)
T PRK11124 173 DPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYME-NGHI 219 (242)
T ss_pred CHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEE-CCEE
Confidence 9887 77888888766568899999999999999999999998 6653
No 119
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.96 E-value=1.2e-31 Score=227.59 Aligned_cols=158 Identities=15% Similarity=0.199 Sum_probs=122.3
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcc--cccCCCEEEeecCchhhhHHHHHHHhhh----hhccccccce
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEY--SKSVGAKAVACTQPRRVAAMSVAQRVSE----EMDCQLGQEV 139 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~--~~~~G~~~i~~~~~~~~~~~~~~~~~~~----~~~~~~~~~v 139 (302)
+.+++++.+++|++++|+||||||||||+++|+|++ +|++|++.++|..............+.+ ....++.+++
T Consensus 24 ~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~i 103 (194)
T cd03213 24 LLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETL 103 (194)
T ss_pred ceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHhhhheEEEccCcccCCCCCcHHHHH
Confidence 578999999999999999999999999999999999 9999999999876532100000001111 1112233322
Q ss_pred eeeeeecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecC
Q psy2071 140 GYSIRFEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVIKQRADLKLVIMSATLD 218 (302)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd 218 (302)
.+.. ....||+||+||++||+||+.+|+++|||| |++++|+.. ..+.+++....+.+.|++++||+
T Consensus 104 ~~~~----------~~~~LS~G~~qrv~laral~~~p~illlDE---P~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~ 170 (194)
T cd03213 104 MFAA----------KLRGLSGGERKRVSIALELVSNPSLLFLDE---PTSGLDSSSALQVMSLLRRLADTGRTIICSIHQ 170 (194)
T ss_pred HHHH----------HhccCCHHHHHHHHHHHHHHcCCCEEEEeC---CCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecC
Confidence 2111 112799999999999999999999999999 999999887 77888888765558899999999
Q ss_pred HH-HHHhhccCCCeeeecCc
Q psy2071 219 AG-KFQQYFDNAPLMNVPGR 237 (302)
Q Consensus 219 ~~-~~~~~~d~~~~l~i~g~ 237 (302)
.+ .+..+||++++|+ .|+
T Consensus 171 ~~~~~~~~~d~v~~l~-~G~ 189 (194)
T cd03213 171 PSSEIFELFDKLLLLS-QGR 189 (194)
T ss_pred chHHHHHhcCEEEEEe-CCE
Confidence 96 7889999999998 665
No 120
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=1.3e-31 Score=238.88 Aligned_cols=170 Identities=15% Similarity=0.156 Sum_probs=126.4
Q ss_pred HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchh--h---hHHHHHHHhhhh-----hccc
Q psy2071 65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRR--V---AAMSVAQRVSEE-----MDCQ 134 (302)
Q Consensus 65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~--~---~~~~~~~~~~~~-----~~~~ 134 (302)
.+++++++.|++|++++|+|+||||||||+++|+|+++|++|++.++|.+... . ........+.+. ...+
T Consensus 15 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~~~~ 94 (271)
T PRK13638 15 PVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQVATVFQDPEQQIFYTD 94 (271)
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhheEEEeeChhhcccccc
Confidence 36889999999999999999999999999999999999999999998865320 0 000000111111 1112
Q ss_pred cccceeeeee-------------------ecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH
Q psy2071 135 LGQEVGYSIR-------------------FEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM 195 (302)
Q Consensus 135 ~~~~v~~~~~-------------------~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~ 195 (302)
+.+++.+... +......++.+..||+||+||++||++|+.+|++||||| |++++|+..
T Consensus 95 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~~p~lllLDE---Pt~~LD~~~ 171 (271)
T PRK13638 95 IDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDE---PTAGLDPAG 171 (271)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHcCCCEEEEeC---CcccCCHHH
Confidence 2222222100 000011245567799999999999999999999999999 999999887
Q ss_pred -HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 196 -GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 196 -~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
..+.+++.+..+.+.|||++|||++.+..+||++++|+ .|+.
T Consensus 172 ~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~-~G~i 214 (271)
T PRK13638 172 RTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLR-QGQI 214 (271)
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEE-CCEE
Confidence 77888887765557899999999999999999999998 6653
No 121
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=1e-31 Score=235.49 Aligned_cols=170 Identities=15% Similarity=0.137 Sum_probs=128.5
Q ss_pred HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhH--------HHHHHHhhhhhccccc
Q psy2071 65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAA--------MSVAQRVSEEMDCQLG 136 (302)
Q Consensus 65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~--------~~~~~~~~~~~~~~~~ 136 (302)
.+++++++.|++|++++|+|+||||||||+++|+|+++|++|++.+.|.+...... ..+.+........++.
T Consensus 17 ~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 96 (241)
T PRK10895 17 RVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIGYLPQEASIFRRLSVY 96 (241)
T ss_pred EEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeEEeccCCcccccCcHH
Confidence 35789999999999999999999999999999999999999999998865422110 0011111111123444
Q ss_pred cceeeeeeecC--------------------CCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-
Q psy2071 137 QEVGYSIRFED--------------------CSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM- 195 (302)
Q Consensus 137 ~~v~~~~~~~~--------------------~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~- 195 (302)
+++.+...... ....+.....||+||+||++||+|++.+|++||||| |++++|+..
T Consensus 97 enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE---Pt~~LD~~~~ 173 (241)
T PRK10895 97 DNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLDE---PFAGVDPISV 173 (241)
T ss_pred HHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhcCCCEEEEcC---CcccCCHHHH
Confidence 54433211100 001234556799999999999999999999999999 999999877
Q ss_pred HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 196 GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 196 ~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
..+.+++....+.+.|++++||+.+.+..+||++++|+ .|+.
T Consensus 174 ~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~-~G~i 215 (241)
T PRK10895 174 IDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVS-QGHL 215 (241)
T ss_pred HHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEe-CCeE
Confidence 67778887665568899999999999999999999998 6664
No 122
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.96 E-value=1.2e-31 Score=237.36 Aligned_cols=170 Identities=16% Similarity=0.181 Sum_probs=128.3
Q ss_pred HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHH---HHHhhh----hhcccccc
Q psy2071 65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSV---AQRVSE----EMDCQLGQ 137 (302)
Q Consensus 65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~---~~~~~~----~~~~~~~~ 137 (302)
.+++++++.|++|++++|+|+||||||||+++|+|+++|++|++.+.|.+......... ...+.+ ....++.+
T Consensus 16 ~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e 95 (258)
T PRK13548 16 TLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAVLPQHSSLSFPFTVEE 95 (258)
T ss_pred eeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEEEccCCcCCCCCCHHH
Confidence 35789999999999999999999999999999999999999999998865322111100 111111 12234444
Q ss_pred ceeeeeeec-------------------CCCCccccccccCHHHHHHHhccccCC------CCCcEEEEcCCCCCCcchH
Q psy2071 138 EVGYSIRFE-------------------DCSSPKTVLKYMTDGMLLREGMSDPML------ENYQVILLDEAHERTLATD 192 (302)
Q Consensus 138 ~v~~~~~~~-------------------~~~~~~~~~~~lS~G~~qr~~la~al~------~~p~lliLDE~~~p~~~lD 192 (302)
++.+..... .....++.+..||+||+||++||+||+ .+|++||||| |++++|
T Consensus 96 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~p~lllLDE---Pt~~LD 172 (258)
T PRK13548 96 VVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDE---PTSALD 172 (258)
T ss_pred HHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeC---CcccCC
Confidence 443321100 001124456779999999999999999 5999999999 999999
Q ss_pred HHH-HHHHHHHHHcC-CCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 193 ILM-GVLKEVIKQRA-DLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 193 ~~~-~~l~~ll~~~~-~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
+.. ..+.+++.... +.+.|||++|||++.+..+||++++|+ .|+.
T Consensus 173 ~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~-~G~i 219 (258)
T PRK13548 173 LAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLH-QGRL 219 (258)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEE-CCEE
Confidence 887 77888887665 557899999999999999999999998 6653
No 123
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.96 E-value=1e-31 Score=239.25 Aligned_cols=169 Identities=17% Similarity=0.190 Sum_probs=127.6
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhH------H----HHHHHhhhhhcccc
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAA------M----SVAQRVSEEMDCQL 135 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~------~----~~~~~~~~~~~~~~ 135 (302)
+++++++.|++|++++|+|+||||||||+++|+|+++|++|++.++|........ . .+.+........++
T Consensus 22 il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv 101 (269)
T PRK11831 22 IFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNV 101 (269)
T ss_pred EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhhcEEEEecccccCCCCCH
Confidence 5788999999999999999999999999999999999999999998864321110 0 01111111122344
Q ss_pred ccceeeeeee--------------------cCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH
Q psy2071 136 GQEVGYSIRF--------------------EDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM 195 (302)
Q Consensus 136 ~~~v~~~~~~--------------------~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~ 195 (302)
.+++.+.... ......++.+..||+||+||++||+||+.+|++||||| |++++|+..
T Consensus 102 ~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDE---Pt~~LD~~~ 178 (269)
T PRK11831 102 FDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMFDE---PFVGQDPIT 178 (269)
T ss_pred HHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC---CCccCCHHH
Confidence 5554332110 00011234567799999999999999999999999999 999999887
Q ss_pred -HHHHHHHHHcCC-CcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 196 -GVLKEVIKQRAD-LKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 196 -~~l~~ll~~~~~-~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
..+.+++....+ .+.|||++|||++.+..+||++++|+ .|+.
T Consensus 179 ~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~-~G~i 222 (269)
T PRK11831 179 MGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVA-DKKI 222 (269)
T ss_pred HHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEE-CCEE
Confidence 778888876644 37899999999999999999999998 6653
No 124
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=6.2e-32 Score=246.36 Aligned_cols=170 Identities=14% Similarity=0.137 Sum_probs=125.3
Q ss_pred HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhccc----ccCCCEEEeecCchhhhHHHH-------HHHhhh----
Q psy2071 65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYS----KSVGAKAVACTQPRRVAAMSV-------AQRVSE---- 129 (302)
Q Consensus 65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~----~~~G~~~i~~~~~~~~~~~~~-------~~~~~~---- 129 (302)
.+++++++.|++||+++|+|+||||||||+++|+|+++ +++|++.+.|.+......... ...+.+
T Consensus 21 ~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~ 100 (326)
T PRK11022 21 RAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPMT 100 (326)
T ss_pred EEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCchh
Confidence 36899999999999999999999999999999999987 478999999876432211100 011111
Q ss_pred --hhccccccceeeeee-------------------ecCCC----CccccccccCHHHHHHHhccccCCCCCcEEEEcCC
Q psy2071 130 --EMDCQLGQEVGYSIR-------------------FEDCS----SPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEA 184 (302)
Q Consensus 130 --~~~~~~~~~v~~~~~-------------------~~~~~----~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~ 184 (302)
....++++++...+. ..... ..+.....|||||+||++||+||+.+|++||+||
T Consensus 101 ~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv~iArAL~~~P~llilDE- 179 (326)
T PRK11022 101 SLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADE- 179 (326)
T ss_pred hcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHhCCCEEEEeC-
Confidence 111222222211110 00110 1234567799999999999999999999999999
Q ss_pred CCCCcchHHHH-HHHHHHHHHcCC-CcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 185 HERTLATDILM-GVLKEVIKQRAD-LKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 185 ~~p~~~lD~~~-~~l~~ll~~~~~-~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
||+++|+.. ..+.+++....+ .+.|+|++|||++.+.++||++++|+ .|+.
T Consensus 180 --Pts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~-~G~i 232 (326)
T PRK11022 180 --PTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMY-AGQV 232 (326)
T ss_pred --CCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEE-CCEE
Confidence 999999887 777787776543 58999999999999999999999998 5553
No 125
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=3.2e-31 Score=232.45 Aligned_cols=169 Identities=17% Similarity=0.242 Sum_probs=126.3
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHH---Hhhh---hhccccccce
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQ---RVSE---EMDCQLGQEV 139 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~---~~~~---~~~~~~~~~v 139 (302)
+.+++++.|.+|++++|+|+||||||||+++|+|+++|++|++.+.|.+........... .+.+ ....++.+++
T Consensus 18 ~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l 97 (241)
T PRK14250 18 ILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLFEGTVKDNI 97 (241)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEEEEecCchhchhhHHHHH
Confidence 578899999999999999999999999999999999999999999886532211000000 0011 1112333333
Q ss_pred eeeeee--------------cCCC--CccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHH
Q psy2071 140 GYSIRF--------------EDCS--SPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVI 202 (302)
Q Consensus 140 ~~~~~~--------------~~~~--~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll 202 (302)
.+.... .... ..++....||+||+||++||+|++.+|++||||| |++++|+.. ..+.+++
T Consensus 98 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDE---Pt~~LD~~~~~~l~~~l 174 (241)
T PRK14250 98 EYGPMLKGEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDE---PTSALDPTSTEIIEELI 174 (241)
T ss_pred hcchhhcCcHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC---CcccCCHHHHHHHHHHH
Confidence 321110 0111 1234567799999999999999999999999999 999999877 7788888
Q ss_pred HHcCC-CcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 203 KQRAD-LKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 203 ~~~~~-~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
....+ .+.|||++|||.+++..+||++++|+ .|+.
T Consensus 175 ~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~-~G~i 210 (241)
T PRK14250 175 VKLKNKMNLTVIWITHNMEQAKRIGDYTAFLN-KGIL 210 (241)
T ss_pred HHHHHhCCCEEEEEeccHHHHHHhCCEEEEEe-CCEE
Confidence 76544 47899999999999999999999998 6653
No 126
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.96 E-value=6.2e-31 Score=220.21 Aligned_cols=154 Identities=16% Similarity=0.201 Sum_probs=120.7
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhhccccccceeeeeee
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRF 145 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 145 (302)
+.+++++.|++|++++|+|+||||||||+++|+|+.+|++|++.++|...... ..... ..++|..+.
T Consensus 17 ~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~-~~~~~------------~~i~~~~q~ 83 (178)
T cd03247 17 VLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL-EKALS------------SLISVLNQR 83 (178)
T ss_pred ceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH-HHHHH------------hhEEEEccC
Confidence 57889999999999999999999999999999999999999999988754321 11111 122222211
Q ss_pred cC---CCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHH
Q psy2071 146 ED---CSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGK 221 (302)
Q Consensus 146 ~~---~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~ 221 (302)
.. ....+.....||+||+||++||+|++.+|+++|||| |++++|+.. ..+.+++....+ +.|++++||+.++
T Consensus 84 ~~~~~~tv~~~i~~~LS~G~~qrv~laral~~~p~~lllDE---P~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~ 159 (178)
T cd03247 84 PYLFDTTLRNNLGRRFSGGERQRLALARILLQDAPIVLLDE---PTVGLDPITERQLLSLIFEVLK-DKTLIWITHHLTG 159 (178)
T ss_pred CeeecccHHHhhcccCCHHHHHHHHHHHHHhcCCCEEEEEC---CcccCCHHHHHHHHHHHHHHcC-CCEEEEEecCHHH
Confidence 10 011111257899999999999999999999999999 999999887 778888877654 7899999999999
Q ss_pred HHhhccCCCeeeecCcC
Q psy2071 222 FQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 222 ~~~~~d~~~~l~i~g~~ 238 (302)
+. .||++++|+ .|+.
T Consensus 160 ~~-~~d~~~~l~-~g~i 174 (178)
T cd03247 160 IE-HMDKILFLE-NGKI 174 (178)
T ss_pred HH-hCCEEEEEE-CCEE
Confidence 86 699999998 6653
No 127
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.96 E-value=1.9e-31 Score=249.26 Aligned_cols=180 Identities=16% Similarity=0.152 Sum_probs=146.3
Q ss_pred HHHhhcCCChhHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhh--------HHHHHH
Q psy2071 54 LHRKRITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVA--------AMSVAQ 125 (302)
Q Consensus 54 l~~~r~~lp~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~--------~~~~~~ 125 (302)
+.+..+.+|...+++++++.+.+||+++|+|+||||||||+|+|+|.++|++|++.++|......+ ...+.|
T Consensus 11 ~~~i~K~FggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~GI~~V~Q 90 (500)
T COG1129 11 LRGISKSFGGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAGIATVHQ 90 (500)
T ss_pred eecceEEcCCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCCcEEEee
Confidence 446677899999999999999999999999999999999999999999999999999987543211 112223
Q ss_pred Hhhhhhccccccceeeee---e--------------------ecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEc
Q psy2071 126 RVSEEMDCQLGQEVGYSI---R--------------------FEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLD 182 (302)
Q Consensus 126 ~~~~~~~~~~~~~v~~~~---~--------------------~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLD 182 (302)
.++..++.++.+|+...- + .......++.+..||.||+|.|+||+|+..++++||||
T Consensus 91 El~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIArAl~~~arllIlD 170 (500)
T COG1129 91 ELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSFDARVLILD 170 (500)
T ss_pred chhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 333444555655553211 0 11101256778889999999999999999999999999
Q ss_pred CCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCc
Q psy2071 183 EAHERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGR 237 (302)
Q Consensus 183 E~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~ 237 (302)
| ||++|+... +.+.++++++++.|+++|++||.++++.++||++.||+ .|+
T Consensus 171 E---PTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlR-DG~ 222 (500)
T COG1129 171 E---PTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLR-DGR 222 (500)
T ss_pred C---CcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEe-CCE
Confidence 9 999999766 88999999999999999999999999999999999999 665
No 128
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=3.7e-31 Score=236.14 Aligned_cols=168 Identities=14% Similarity=0.103 Sum_probs=127.8
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhH-HHHH---HHhhh-----hhccccc
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAA-MSVA---QRVSE-----EMDCQLG 136 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~-~~~~---~~~~~-----~~~~~~~ 136 (302)
+++++++.|++|++++|+|+||||||||+++|+|+++|++|++.+.|.+...... .... ..+.+ ....++.
T Consensus 17 ~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~ 96 (274)
T PRK13644 17 ALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRTVE 96 (274)
T ss_pred eeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheEEEEEChhhhcccchHH
Confidence 6789999999999999999999999999999999999999999999876432110 0111 11111 1223444
Q ss_pred cceeeeeeec-------------------CCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-H
Q psy2071 137 QEVGYSIRFE-------------------DCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-G 196 (302)
Q Consensus 137 ~~v~~~~~~~-------------------~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~ 196 (302)
+++.+..... .....++.+..||+||+||++||+||+.+|++||||| |++++|+.. .
T Consensus 97 enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDE---Pt~gLD~~~~~ 173 (274)
T PRK13644 97 EDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDE---VTSMLDPDSGI 173 (274)
T ss_pred HHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC---CcccCCHHHHH
Confidence 4443321100 0011245567799999999999999999999999999 999999888 7
Q ss_pred HHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 197 VLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 197 ~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
.+.+++.++.+.|.||+++||+++.+ ..||++++|+ .|+.
T Consensus 174 ~l~~~l~~l~~~g~til~~tH~~~~~-~~~d~v~~l~-~G~i 213 (274)
T PRK13644 174 AVLERIKKLHEKGKTIVYITHNLEEL-HDADRIIVMD-RGKI 213 (274)
T ss_pred HHHHHHHHHHhCCCEEEEEecCHHHH-hhCCEEEEEE-CCEE
Confidence 78888877665689999999999998 5699999998 6653
No 129
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.96 E-value=5.8e-32 Score=246.81 Aligned_cols=169 Identities=17% Similarity=0.198 Sum_probs=124.9
Q ss_pred HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhccccc---CCCEEEeecCchhhhHHHH-------HHHhhh-----
Q psy2071 65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKS---VGAKAVACTQPRRVAAMSV-------AQRVSE----- 129 (302)
Q Consensus 65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~---~G~~~i~~~~~~~~~~~~~-------~~~~~~----- 129 (302)
.+++++++.|++||+++|+|+||||||||+++|+|+++|+ +|++.++|.+......... ...+.+
T Consensus 30 ~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~ 109 (330)
T PRK09473 30 TAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDPMTS 109 (330)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHHHHHhcCCEEEEEcCchhh
Confidence 3578999999999999999999999999999999999986 8999999876422111100 011111
Q ss_pred -hhccccccceeeeeee-------------------cCCC----CccccccccCHHHHHHHhccccCCCCCcEEEEcCCC
Q psy2071 130 -EMDCQLGQEVGYSIRF-------------------EDCS----SPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAH 185 (302)
Q Consensus 130 -~~~~~~~~~v~~~~~~-------------------~~~~----~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~ 185 (302)
....++.+++.+.+.. .... ..+.....|||||+||++||+||+.+|++||+||
T Consensus 110 l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~QRv~IArAL~~~P~llilDE-- 187 (330)
T PRK09473 110 LNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMALLCRPKLLIADE-- 187 (330)
T ss_pred cCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC--
Confidence 1112233222211100 0000 0123556799999999999999999999999999
Q ss_pred CCCcchHHHH-HHHHHHHHHcCC-CcEEEEEEecCHHHHHhhccCCCeeeecCc
Q psy2071 186 ERTLATDILM-GVLKEVIKQRAD-LKLVIMSATLDAGKFQQYFDNAPLMNVPGR 237 (302)
Q Consensus 186 ~p~~~lD~~~-~~l~~ll~~~~~-~~~~ii~~thd~~~~~~~~d~~~~l~i~g~ 237 (302)
||+++|... ..+.+++....+ .+.|+|++|||++.+..+||++++|+ .|+
T Consensus 188 -Pts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~-~G~ 239 (330)
T PRK09473 188 -PTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMY-AGR 239 (330)
T ss_pred -CCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEE-CCE
Confidence 999999887 677777776543 48999999999999999999999998 554
No 130
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.96 E-value=9.2e-32 Score=238.06 Aligned_cols=170 Identities=17% Similarity=0.141 Sum_probs=128.5
Q ss_pred HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhh-------------hHHHHHHHh---h
Q psy2071 65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRV-------------AAMSVAQRV---S 128 (302)
Q Consensus 65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~-------------~~~~~~~~~---~ 128 (302)
.+++++++.|++|++++|+|+||||||||+++|+|+++|++|++.+.|.+.... ........+ .
T Consensus 19 ~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~ 98 (257)
T PRK10619 19 EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRLTMVF 98 (257)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccccccchHHHHHhhceEEEe
Confidence 357889999999999999999999999999999999999999999988643210 000011111 1
Q ss_pred h----hhccccccceeeee-------------------eecCCC-C-ccccccccCHHHHHHHhccccCCCCCcEEEEcC
Q psy2071 129 E----EMDCQLGQEVGYSI-------------------RFEDCS-S-PKTVLKYMTDGMLLREGMSDPMLENYQVILLDE 183 (302)
Q Consensus 129 ~----~~~~~~~~~v~~~~-------------------~~~~~~-~-~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE 183 (302)
+ ....++.+++.+.. ...... . .+.....||+||+||++||+||+.+|++|||||
T Consensus 99 q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE 178 (257)
T PRK10619 99 QHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDE 178 (257)
T ss_pred cCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 1 11234444443210 000111 1 134567899999999999999999999999999
Q ss_pred CCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 184 AHERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 184 ~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
|++++|+.. ..+.+++....+.|.+|+++|||.+++..+||++++|+ .|+.
T Consensus 179 ---Pt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~-~G~i 230 (257)
T PRK10619 179 ---PTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLH-QGKI 230 (257)
T ss_pred ---CcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEE-CCEE
Confidence 999999887 77888888766568999999999999999999999998 6653
No 131
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.96 E-value=1.5e-31 Score=246.72 Aligned_cols=165 Identities=15% Similarity=0.106 Sum_probs=126.3
Q ss_pred HHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhh-----------HHHHHHHhhhhhcccccc
Q psy2071 69 EFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVA-----------AMSVAQRVSEEMDCQLGQ 137 (302)
Q Consensus 69 ~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~ 137 (302)
++++.|++|++++|+||||||||||+++|+|+++|++|++.++|....... ...+.+........++.+
T Consensus 15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e 94 (354)
T TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSVRG 94 (354)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcHHH
Confidence 688999999999999999999999999999999999999999886532110 001111111222345666
Q ss_pred ceeeeeeec-----------------CCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHH
Q psy2071 138 EVGYSIRFE-----------------DCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLK 199 (302)
Q Consensus 138 ~v~~~~~~~-----------------~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~ 199 (302)
++.+..... .....++.+..|||||+||++||+||+.+|++||||| |++++|+.. ..+.
T Consensus 95 nl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~lllLDE---Pts~LD~~~~~~l~ 171 (354)
T TIGR02142 95 NLRYGMKRARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDE---PLAALDDPRKYEIL 171 (354)
T ss_pred HHHHHhhccChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcC---CCcCCCHHHHHHHH
Confidence 655432110 0011244567799999999999999999999999999 999999887 7778
Q ss_pred HHHHHcCC-CcEEEEEEecCHHHHHhhccCCCeeeecCc
Q psy2071 200 EVIKQRAD-LKLVIMSATLDAGKFQQYFDNAPLMNVPGR 237 (302)
Q Consensus 200 ~ll~~~~~-~~~~ii~~thd~~~~~~~~d~~~~l~i~g~ 237 (302)
+++++..+ .+.|+|++|||++++..+||++++|+ .|+
T Consensus 172 ~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~-~G~ 209 (354)
T TIGR02142 172 PYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLE-DGR 209 (354)
T ss_pred HHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEe-CCE
Confidence 88776544 47899999999999999999999998 555
No 132
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=2.5e-31 Score=238.09 Aligned_cols=169 Identities=16% Similarity=0.123 Sum_probs=127.2
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhh-------hHHHHHHHhhh-----hhcc
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRV-------AAMSVAQRVSE-----EMDC 133 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~-------~~~~~~~~~~~-----~~~~ 133 (302)
+++++++.|++|++++|+|+||||||||+++|+|+++|++|++.+.|.+.... .......++.+ .+..
T Consensus 22 ~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 101 (280)
T PRK13649 22 ALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFEE 101 (280)
T ss_pred eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHHHHhheEEEeeChhhhhccc
Confidence 57889999999999999999999999999999999999999999988643210 00000011111 1122
Q ss_pred ccccceeeee------------------eecCCC--CccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHH
Q psy2071 134 QLGQEVGYSI------------------RFEDCS--SPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDI 193 (302)
Q Consensus 134 ~~~~~v~~~~------------------~~~~~~--~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~ 193 (302)
++.+++.+.. ...... ..++.+..||+||+||++||+||+.+|++||||| |++++|+
T Consensus 102 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDE---Pt~~LD~ 178 (280)
T PRK13649 102 TVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDE---PTAGLDP 178 (280)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC---CcccCCH
Confidence 3444433211 000111 1245667899999999999999999999999999 9999998
Q ss_pred HH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 194 LM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 194 ~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
.. ..+.+++....+.+.|||++||+.+++..+||++++|+ .|+.
T Consensus 179 ~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~-~G~i 223 (280)
T PRK13649 179 KGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLE-KGKL 223 (280)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEE-CCEE
Confidence 87 77888887665558899999999999999999999998 6653
No 133
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=1.2e-31 Score=237.06 Aligned_cols=170 Identities=15% Similarity=0.199 Sum_probs=128.4
Q ss_pred HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHH---HHHhhh----hhcccccc
Q psy2071 65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSV---AQRVSE----EMDCQLGQ 137 (302)
Q Consensus 65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~---~~~~~~----~~~~~~~~ 137 (302)
.+++++++.+++|++++|+|+||||||||+++|+|+++|++|++.+.|.+......... ...+.+ ....++.+
T Consensus 16 ~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~ 95 (255)
T PRK11231 16 RILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLALLPQHHLTPEGITVRE 95 (255)
T ss_pred EEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEEecccCCCCCCccHHH
Confidence 35789999999999999999999999999999999999999999998865432111110 111111 11224444
Q ss_pred ceeeeee-----ec-----------------C-CCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHH
Q psy2071 138 EVGYSIR-----FE-----------------D-CSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDIL 194 (302)
Q Consensus 138 ~v~~~~~-----~~-----------------~-~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~ 194 (302)
++.+... +. . ....++.+..||+||+||++||+|++.+|++||||| |++++|+.
T Consensus 96 ~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE---P~~~LD~~ 172 (255)
T PRK11231 96 LVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDE---PTTYLDIN 172 (255)
T ss_pred HHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcC---CcccCCHH
Confidence 4432210 00 0 001244567799999999999999999999999999 99999988
Q ss_pred H-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 195 M-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 195 ~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
. ..+.+++....+.+.|+|++||+++.+.++||++++|+ .|+.
T Consensus 173 ~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~-~G~i 216 (255)
T PRK11231 173 HQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLA-NGHV 216 (255)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEE-CCeE
Confidence 7 77888887665558899999999999999999999998 6664
No 134
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.96 E-value=2.1e-31 Score=236.73 Aligned_cols=169 Identities=16% Similarity=0.224 Sum_probs=126.1
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhH------HHHHHHhhh------hhcc
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAA------MSVAQRVSE------EMDC 133 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~------~~~~~~~~~------~~~~ 133 (302)
+++++++.|++|++++|+|+||||||||+++|+|+++|++|++.+.|.+...... ......+.+ ....
T Consensus 26 il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~ 105 (265)
T TIGR02769 26 VLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNPRM 105 (265)
T ss_pred EeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHHHHHHhhceEEEecChhhhcCCCC
Confidence 5789999999999999999999999999999999999999999998865322110 000011111 1112
Q ss_pred ccccceeeee-------------------eecCC--CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchH
Q psy2071 134 QLGQEVGYSI-------------------RFEDC--SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATD 192 (302)
Q Consensus 134 ~~~~~v~~~~-------------------~~~~~--~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD 192 (302)
++.+++.+.. ..... ...+..+..||+||+||++||+||+.+|++||||| |++++|
T Consensus 106 tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~laral~~~p~illLDE---Pt~~LD 182 (265)
T TIGR02769 106 TVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDE---AVSNLD 182 (265)
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC---CcccCC
Confidence 3333322110 00011 11245667799999999999999999999999999 999999
Q ss_pred HHH-HHHHHHHHHcCC-CcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 193 ILM-GVLKEVIKQRAD-LKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 193 ~~~-~~l~~ll~~~~~-~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
+.. ..+.+++....+ .+.|||++|||++.+..+||++++|+ .|+.
T Consensus 183 ~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~-~G~i 229 (265)
T TIGR02769 183 MVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMD-KGQI 229 (265)
T ss_pred HHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEe-CCEE
Confidence 887 677788776544 48899999999999999999999998 6653
No 135
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.96 E-value=7.9e-32 Score=230.72 Aligned_cols=163 Identities=15% Similarity=0.134 Sum_probs=121.1
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhh---HH-H-------HHHHhhhhhccc
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVA---AM-S-------VAQRVSEEMDCQ 134 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~---~~-~-------~~~~~~~~~~~~ 134 (302)
+++++++.+++|++++|+||||||||||+++|+|+++|++|++.+.|.+..... .. . +.+........+
T Consensus 13 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 92 (206)
T TIGR03608 13 ILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFALIENET 92 (206)
T ss_pred EEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCeeEEecchhhccCCc
Confidence 578999999999999999999999999999999999999999999887632110 00 0 011111111234
Q ss_pred cccceeeeee-------------------ecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH
Q psy2071 135 LGQEVGYSIR-------------------FEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM 195 (302)
Q Consensus 135 ~~~~v~~~~~-------------------~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~ 195 (302)
+.+++.+... +......++.+..||+||+||++||+||+.+|++||||| |++++|+..
T Consensus 93 ~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~~p~llllDE---Pt~~LD~~~ 169 (206)
T TIGR03608 93 VEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKDPPLILADE---PTGSLDPKN 169 (206)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeC---CcCCCCHHH
Confidence 4444332110 000012245667799999999999999999999999999 999999887
Q ss_pred -HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCee
Q psy2071 196 -GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLM 232 (302)
Q Consensus 196 -~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l 232 (302)
..+.+++++..+.+.++|++||+.+.+ .+||++++|
T Consensus 170 ~~~l~~~l~~~~~~~~tii~~sh~~~~~-~~~d~i~~l 206 (206)
T TIGR03608 170 RDEVLDLLLELNDEGKTIIIVTHDPEVA-KQADRVIEL 206 (206)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHHHH-hhcCEEEeC
Confidence 788888887655588999999999865 589988764
No 136
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.96 E-value=2.2e-31 Score=231.50 Aligned_cols=168 Identities=15% Similarity=0.100 Sum_probs=124.8
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHH-----------HHHHHhhhhhccc
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAM-----------SVAQRVSEEMDCQ 134 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~-----------~~~~~~~~~~~~~ 134 (302)
+.+++++.|++|++++|+|+||||||||+++|+|+++|++|++.+.|......... .+.+........+
T Consensus 25 ~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~~~~t 104 (228)
T PRK10584 25 ILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLIPTLN 104 (228)
T ss_pred EEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHHHhheEEEEEcccccCCCcC
Confidence 47889999999999999999999999999999999999999999988654221100 0011111111234
Q ss_pred cccceeeeeeec-------------------CCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH
Q psy2071 135 LGQEVGYSIRFE-------------------DCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM 195 (302)
Q Consensus 135 ~~~~v~~~~~~~-------------------~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~ 195 (302)
+.+++.+...+. .....++.+..||+||+||++||+||+.+|++||||| |++++|+..
T Consensus 105 v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al~~~p~llllDE---Pt~~LD~~~ 181 (228)
T PRK10584 105 ALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADE---PTGNLDRQT 181 (228)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC---CCCCCCHHH
Confidence 444443211100 0011234567799999999999999999999999999 999999887
Q ss_pred -HHHHHHHHHcC-CCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 196 -GVLKEVIKQRA-DLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 196 -~~l~~ll~~~~-~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
..+.+++.+.. +.+.|||++|||.+.+. .||++++|+ .|+.
T Consensus 182 ~~~l~~~l~~~~~~~~~tii~~sH~~~~~~-~~d~i~~l~-~g~i 224 (228)
T PRK10584 182 GDKIADLLFSLNREHGTTLILVTHDLQLAA-RCDRRLRLV-NGQL 224 (228)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEecCHHHHH-hCCEEEEEE-CCEE
Confidence 77888887664 34789999999999875 599999998 6653
No 137
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=4.8e-31 Score=235.96 Aligned_cols=168 Identities=17% Similarity=0.153 Sum_probs=128.8
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHH---HHHhh-----hhhcccccc
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSV---AQRVS-----EEMDCQLGQ 137 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~---~~~~~-----~~~~~~~~~ 137 (302)
+++++++.|++|++++|+|+||||||||+++|+|+++|++|++.++|.+......... ..++. .....++.+
T Consensus 22 ~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e 101 (279)
T PRK13635 22 ALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQD 101 (279)
T ss_pred ceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheEEEEeCHHHhcccccHHH
Confidence 5788999999999999999999999999999999999999999999876432111111 11111 122335555
Q ss_pred ceeeeeeec-------------------CCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HH
Q psy2071 138 EVGYSIRFE-------------------DCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GV 197 (302)
Q Consensus 138 ~v~~~~~~~-------------------~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~ 197 (302)
++.+..... .....++.+..||+||+||++||+||+.+|++||||| |++++|+.. ..
T Consensus 102 nl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDE---Pt~gLD~~~~~~ 178 (279)
T PRK13635 102 DVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDE---ATSMLDPRGRRE 178 (279)
T ss_pred HHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC---CcccCCHHHHHH
Confidence 554322110 0012344567799999999999999999999999999 999999888 78
Q ss_pred HHHHHHHcCC-CcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 198 LKEVIKQRAD-LKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 198 l~~ll~~~~~-~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
+.+++....+ .+.||+++||+++.+. .||++++|+ .|+.
T Consensus 179 l~~~l~~l~~~~~~tilivsH~~~~~~-~~d~i~~l~-~G~i 218 (279)
T PRK13635 179 VLETVRQLKEQKGITVLSITHDLDEAA-QADRVIVMN-KGEI 218 (279)
T ss_pred HHHHHHHHHHcCCCEEEEEecCHHHHH-cCCEEEEEE-CCEE
Confidence 8888887654 3899999999999997 599999998 6653
No 138
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=2.7e-31 Score=238.10 Aligned_cols=169 Identities=19% Similarity=0.189 Sum_probs=128.8
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCch--hhhHH---HHHHHhhh-----hhcccc
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPR--RVAAM---SVAQRVSE-----EMDCQL 135 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~--~~~~~---~~~~~~~~-----~~~~~~ 135 (302)
+.+++++.|++||+++|+|+||||||||+++|+|+++|++|++.+.|.+.. ..... ....++.+ ....++
T Consensus 21 ~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv 100 (283)
T PRK13636 21 ALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASV 100 (283)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhhEEEEecCcchhhccccH
Confidence 678999999999999999999999999999999999999999999986542 11000 11111111 122345
Q ss_pred ccceeeeeee-------------------cCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-
Q psy2071 136 GQEVGYSIRF-------------------EDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM- 195 (302)
Q Consensus 136 ~~~v~~~~~~-------------------~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~- 195 (302)
.+++.+.... ......++.+..||+||+||++||+||+.+|++||||| |++++|+..
T Consensus 101 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~~p~lLilDE---Pt~gLD~~~~ 177 (283)
T PRK13636 101 YQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDE---PTAGLDPMGV 177 (283)
T ss_pred HHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC---CccCCCHHHH
Confidence 5555432110 00012345677799999999999999999999999999 999999888
Q ss_pred HHHHHHHHHcCC-CcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 196 GVLKEVIKQRAD-LKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 196 ~~l~~ll~~~~~-~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
..+.+++....+ .+.||+++||+++.+..+||++++|+ .|+.
T Consensus 178 ~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~-~G~i 220 (283)
T PRK13636 178 SEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMK-EGRV 220 (283)
T ss_pred HHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEE-CCEE
Confidence 778888876544 47899999999999999999999998 6653
No 139
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=1.5e-31 Score=233.29 Aligned_cols=168 Identities=14% Similarity=0.125 Sum_probs=125.4
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHH---H----HHHhhh----hhccc
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMS---V----AQRVSE----EMDCQ 134 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~---~----~~~~~~----~~~~~ 134 (302)
+++++++.|++|++++|+||||||||||+++|+|+++|++|++.++|.+........ . ..++.+ ....+
T Consensus 24 il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 103 (233)
T PRK11629 24 VLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPDFT 103 (233)
T ss_pred eEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHHHhccEEEEecCcccCCCCC
Confidence 578899999999999999999999999999999999999999999986543221100 0 011111 11234
Q ss_pred cccceeeeeee-------------------cCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH
Q psy2071 135 LGQEVGYSIRF-------------------EDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM 195 (302)
Q Consensus 135 ~~~~v~~~~~~-------------------~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~ 195 (302)
+.+++.+...+ ......++.+..||+||+||++||+|++.+|++||||| |++++|+..
T Consensus 104 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDE---Pt~~LD~~~ 180 (233)
T PRK11629 104 ALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADE---PTGNLDARN 180 (233)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC---CCCCCCHHH
Confidence 44554332110 00011234567799999999999999999999999999 999999887
Q ss_pred -HHHHHHHHHcCC-CcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 196 -GVLKEVIKQRAD-LKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 196 -~~l~~ll~~~~~-~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
..+.+++.+..+ .+.|||++||+++++..+ |++++|+ .|+.
T Consensus 181 ~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~-~~~~~l~-~G~i 223 (233)
T PRK11629 181 ADSIFQLLGELNRLQGTAFLVVTHDLQLAKRM-SRQLEMR-DGRL 223 (233)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhh-CEEEEEE-CCEE
Confidence 778888887643 578999999999998875 6888887 6654
No 140
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=2.8e-31 Score=235.95 Aligned_cols=170 Identities=15% Similarity=0.156 Sum_probs=128.1
Q ss_pred HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHH---HHHhhh----hhcccccc
Q psy2071 65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSV---AQRVSE----EMDCQLGQ 137 (302)
Q Consensus 65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~---~~~~~~----~~~~~~~~ 137 (302)
.+++++++.|++|++++|+|+||||||||+++|+|+++|++|++.+.|.+......... ...+.+ ....++.+
T Consensus 25 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e 104 (265)
T PRK10575 25 TLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVAYLPQQLPAAEGMTVRE 104 (265)
T ss_pred EEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhheEEeccCCCCCCCccHHH
Confidence 46789999999999999999999999999999999999999999998865422111110 111111 12234444
Q ss_pred ceeeeee-e----------------------cCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHH
Q psy2071 138 EVGYSIR-F----------------------EDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDIL 194 (302)
Q Consensus 138 ~v~~~~~-~----------------------~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~ 194 (302)
++.+... . ......++.+..||+||+||++||+||+.+|++||||| |++++|+.
T Consensus 105 ~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDE---Pt~~LD~~ 181 (265)
T PRK10575 105 LVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDE---PTSALDIA 181 (265)
T ss_pred HHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcC---CcccCCHH
Confidence 4433210 0 00001234556799999999999999999999999999 99999988
Q ss_pred H-HHHHHHHHHcCC-CcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 195 M-GVLKEVIKQRAD-LKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 195 ~-~~l~~ll~~~~~-~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
. ..+.+++....+ .+.+||++||+++++.++||++++|+ .|+.
T Consensus 182 ~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~-~G~i 226 (265)
T PRK10575 182 HQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALR-GGEM 226 (265)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEE-CCeE
Confidence 7 778888876643 47899999999999999999999998 6664
No 141
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.96 E-value=1.1e-30 Score=216.15 Aligned_cols=172 Identities=17% Similarity=0.138 Sum_probs=130.6
Q ss_pred hhHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhh-------hcccc
Q psy2071 63 VFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEE-------MDCQL 135 (302)
Q Consensus 63 ~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~-------~~~~~ 135 (302)
-.++++++++.+.+||+++|+||||+|||||++.++|.+.|++|++.++|.....+....++...+-. +..++
T Consensus 13 Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laFpFtv 92 (259)
T COG4559 13 GRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFPFTV 92 (259)
T ss_pred cceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhhcccCcccccceEH
Confidence 34567899999999999999999999999999999999999999999999886655555444433221 22233
Q ss_pred ccceeeeeeec---CC------------------CCccccccccCHHHHHHHhccccCCC------CCcEEEEcCCCCCC
Q psy2071 136 GQEVGYSIRFE---DC------------------SSPKTVLKYMTDGMLLREGMSDPMLE------NYQVILLDEAHERT 188 (302)
Q Consensus 136 ~~~v~~~~~~~---~~------------------~~~~~~~~~lS~G~~qr~~la~al~~------~p~lliLDE~~~p~ 188 (302)
.+-|.+...-. .. ....+.+..||||++|||.+||.|+. ++++|+||| ||
T Consensus 93 ~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDE---Pt 169 (259)
T COG4559 93 QEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDE---PT 169 (259)
T ss_pred HHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHHccCCCCCCceEEecC---Cc
Confidence 33332221111 00 01233455699999999999998754 456899999 99
Q ss_pred cchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 189 LATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 189 ~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
+++|+.. ..+.++.++....|..|+.+-||++.+..|||++++|+ .|+.
T Consensus 170 saLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~YaDrivll~-~Grv 219 (259)
T COG4559 170 SALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLH-QGRV 219 (259)
T ss_pred cccchHHHHHHHHHHHHHHhcCCcEEEEEccchHHHHhhheeeeee-CCeE
Confidence 9999887 56777777777777888888999999999999999999 6764
No 142
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.96 E-value=1.9e-31 Score=229.73 Aligned_cols=166 Identities=13% Similarity=0.081 Sum_probs=124.3
Q ss_pred HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhH---H-HHHHHhhhhhcccccccee
Q psy2071 65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAA---M-SVAQRVSEEMDCQLGQEVG 140 (302)
Q Consensus 65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~v~ 140 (302)
.+.+++++.|++|++++|+|+||||||||+++|+|+++|++|++.+.|........ + .+.+........++.+++.
T Consensus 25 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~~~~~i~~~~q~~~~~~~~t~~e~l~ 104 (214)
T PRK13543 25 PVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAYLGHLPGLKADLSTLENLH 104 (214)
T ss_pred eeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchhhhhceEEeecCcccccCCcHHHHHH
Confidence 35789999999999999999999999999999999999999999998864321100 0 0001100011122333321
Q ss_pred eee----------------eecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHH
Q psy2071 141 YSI----------------RFEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVIK 203 (302)
Q Consensus 141 ~~~----------------~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~ 203 (302)
+.. .+......++.+..||+||+||+++|++++.+|++||||| |++++|+.. ..+.+++.
T Consensus 105 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE---Pt~~LD~~~~~~l~~~l~ 181 (214)
T PRK13543 105 FLCGLHGRRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDE---PYANLDLEGITLVNRMIS 181 (214)
T ss_pred HHHHhcCCcHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC---CcccCCHHHHHHHHHHHH
Confidence 110 0111112355667899999999999999999999999999 999999888 78888887
Q ss_pred HcCCCcEEEEEEecCHHHHHhhccCCCeee
Q psy2071 204 QRADLKLVIMSATLDAGKFQQYFDNAPLMN 233 (302)
Q Consensus 204 ~~~~~~~~ii~~thd~~~~~~~~d~~~~l~ 233 (302)
...+.+.|++++|||.+++.++||+++++.
T Consensus 182 ~~~~~~~tiii~sH~~~~~~~~~~~i~~l~ 211 (214)
T PRK13543 182 AHLRGGGAALVTTHGAYAAPPVRTRMLTLE 211 (214)
T ss_pred HHHhCCCEEEEEecChhhhhhhcceEEEEe
Confidence 665567899999999999999999998886
No 143
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.96 E-value=2.6e-31 Score=231.40 Aligned_cols=168 Identities=17% Similarity=0.188 Sum_probs=123.2
Q ss_pred HHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccc----cCCCEEEeecCchhhhHH-HHHHHhhhh------hcccc
Q psy2071 67 RTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSK----SVGAKAVACTQPRRVAAM-SVAQRVSEE------MDCQL 135 (302)
Q Consensus 67 ~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~----~~G~~~i~~~~~~~~~~~-~~~~~~~~~------~~~~~ 135 (302)
.+++++.|++|++++|+||||||||||+++|+|+++| ++|++.++|.+....... .....+.+. ...++
T Consensus 2 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t~ 81 (230)
T TIGR02770 2 VQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFTM 81 (230)
T ss_pred ccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccCH
Confidence 4678899999999999999999999999999999998 899999988654221100 000011110 01122
Q ss_pred ccceeee------------------eeecCC----CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHH
Q psy2071 136 GQEVGYS------------------IRFEDC----SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDI 193 (302)
Q Consensus 136 ~~~v~~~------------------~~~~~~----~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~ 193 (302)
.+++.+. +..... ...++.+..||+||+||++||+|++.+|++||||| |++++|+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDE---Pt~~LD~ 158 (230)
T TIGR02770 82 GNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADE---PTTDLDV 158 (230)
T ss_pred HHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcC---CccccCH
Confidence 1111110 000011 11245667899999999999999999999999999 9999998
Q ss_pred HH-HHHHHHHHHcCC-CcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 194 LM-GVLKEVIKQRAD-LKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 194 ~~-~~l~~ll~~~~~-~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
.. ..+.+++.+..+ .+.||+++||+++++..+||++++|+ .|+.
T Consensus 159 ~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~-~G~i 204 (230)
T TIGR02770 159 VNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMD-DGRI 204 (230)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEE-CCEE
Confidence 87 778888876544 47899999999999999999999998 6653
No 144
>KOG0920|consensus
Probab=99.96 E-value=2e-29 Score=248.55 Aligned_cols=206 Identities=42% Similarity=0.733 Sum_probs=193.1
Q ss_pred CCCCCChhhHHHHHhhcCCChhHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCC-CEEEeecCchhhhHH
Q psy2071 43 TGYPYTPRYHELHRKRITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVG-AKAVACTQPRRVAAM 121 (302)
Q Consensus 43 ~~~~~~~~~~~l~~~r~~lp~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G-~~~i~~~~~~~~~~~ 121 (302)
.....+.+|.++...|.+||+|..++.|...|+++++++|.|++||||||++++.......++| .+.|.|+||||++++
T Consensus 154 ~~~~~s~~~~~~~~~R~~LPa~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~~~~~IicTQPRRIsAI 233 (924)
T KOG0920|consen 154 SEPKKSESYKEMLRFRESLPAYKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESGAACNIICTQPRRISAI 233 (924)
T ss_pred chhhhhhHHHHHHHHHHhCccHHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcCCCCeEEecCCchHHHH
Confidence 3446668899999999999999999999999999999999999999999999999876554444 677999999999999
Q ss_pred HHHHHhhhhhccccccceeeeeeecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHHHHHHHH
Q psy2071 122 SVAQRVSEEMDCQLGQEVGYSIRFEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILMGVLKEV 201 (302)
Q Consensus 122 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~~~l~~l 201 (302)
+++.+|+.+.+.+.+..|||.++.+.....++++.+++.|.+.|.......+.+..+||+||+||+....|.++..++.+
T Consensus 234 svAeRVa~ER~~~~g~~VGYqvrl~~~~s~~t~L~fcTtGvLLr~L~~~~~l~~vthiivDEVHER~i~~DflLi~lk~l 313 (924)
T KOG0920|consen 234 SVAERVAKERGESLGEEVGYQVRLESKRSRETRLLFCTTGVLLRRLQSDPTLSGVTHIIVDEVHERSINTDFLLILLKDL 313 (924)
T ss_pred HHHHHHHHHhccccCCeeeEEEeeecccCCceeEEEecHHHHHHHhccCcccccCceeeeeeEEEccCCcccHHHHHHHH
Confidence 99999999999999999999999999888889999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcCCccceeecCC
Q psy2071 202 IKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRTHPVEIFYTPE 248 (302)
Q Consensus 202 l~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~~~~~~~~~~~ 248 (302)
+..+.+.++++|+||-|.+.+..||..+++|+++|+.|||..||.++
T Consensus 314 L~~~p~LkvILMSAT~dae~fs~YF~~~pvi~i~grtfpV~~~fLED 360 (924)
T KOG0920|consen 314 LPRNPDLKVILMSATLDAELFSDYFGGCPVITIPGRTFPVKEYFLED 360 (924)
T ss_pred hhhCCCceEEEeeeecchHHHHHHhCCCceEeecCCCcchHHHHHHH
Confidence 99999999999999999999999999999999999999999998765
No 145
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.96 E-value=2.5e-31 Score=236.44 Aligned_cols=169 Identities=17% Similarity=0.199 Sum_probs=124.6
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHH---Hhhhh------hccccc
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQ---RVSEE------MDCQLG 136 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~---~~~~~------~~~~~~ 136 (302)
+++++++.|++|++++|+||||||||||+++|+|+++|++|++.+.|.+........... .+.+. ...++.
T Consensus 28 ~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~ 107 (267)
T PRK15112 28 AVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNPRQRIS 107 (267)
T ss_pred eeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchhhHhccEEEEecCchhhcCcchhHH
Confidence 578999999999999999999999999999999999999999999886532111000000 00110 011111
Q ss_pred cceeee-------------------eeecCC--CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH
Q psy2071 137 QEVGYS-------------------IRFEDC--SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM 195 (302)
Q Consensus 137 ~~v~~~-------------------~~~~~~--~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~ 195 (302)
+++.+. +..... ...+..+..||+||+||++||+||+.+|++||||| |++++|+..
T Consensus 108 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDE---Pt~~LD~~~ 184 (267)
T PRK15112 108 QILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLARALILRPKVIIADE---ALASLDMSM 184 (267)
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHHHHHHhCCCEEEEcC---CcccCCHHH
Confidence 111110 000011 11234567899999999999999999999999999 999999887
Q ss_pred -HHHHHHHHHcCC-CcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 196 -GVLKEVIKQRAD-LKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 196 -~~l~~ll~~~~~-~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
..+.+++.+..+ .+.|||++||+++.+..+||++++|+ .|+.
T Consensus 185 ~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~-~G~i 228 (267)
T PRK15112 185 RSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMH-QGEV 228 (267)
T ss_pred HHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEE-CCEE
Confidence 778888877644 47899999999999999999999998 6654
No 146
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.96 E-value=1.4e-31 Score=234.87 Aligned_cols=169 Identities=14% Similarity=0.058 Sum_probs=123.8
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcc--cccCCCEEEeecCchhhhH--------HHHHHHhhhhhcccc
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEY--SKSVGAKAVACTQPRRVAA--------MSVAQRVSEEMDCQL 135 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~--~~~~G~~~i~~~~~~~~~~--------~~~~~~~~~~~~~~~ 135 (302)
+++++++.|++|++++|+||||||||||+++|+|++ +|++|++.+.|.+...... ..+.+........++
T Consensus 15 ~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t~ 94 (243)
T TIGR01978 15 ILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGLFLAFQYPEEIPGVSN 94 (243)
T ss_pred EEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccceEeeeccccccCCcCH
Confidence 578999999999999999999999999999999995 7899999998865422110 001111111111122
Q ss_pred ccceeee-------------------------eeecCCC--Ccccccc-ccCHHHHHHHhccccCCCCCcEEEEcCCCCC
Q psy2071 136 GQEVGYS-------------------------IRFEDCS--SPKTVLK-YMTDGMLLREGMSDPMLENYQVILLDEAHER 187 (302)
Q Consensus 136 ~~~v~~~-------------------------~~~~~~~--~~~~~~~-~lS~G~~qr~~la~al~~~p~lliLDE~~~p 187 (302)
.+++.+. +...... ..++.+. .||+||+||++||++|+.+|++||||| |
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDE---P 171 (243)
T TIGR01978 95 LEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDE---I 171 (243)
T ss_pred HHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHHHHhcCCCEEEecC---C
Confidence 2211110 0000111 1234444 499999999999999999999999999 9
Q ss_pred CcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhh-ccCCCeeeecCcC
Q psy2071 188 TLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQY-FDNAPLMNVPGRT 238 (302)
Q Consensus 188 ~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~-~d~~~~l~i~g~~ 238 (302)
++++|+.. ..+.+++....+.+.|||++|||.+.+..+ ||++++|+ .|+.
T Consensus 172 t~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~-~G~i 223 (243)
T TIGR01978 172 DSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLL-DGRI 223 (243)
T ss_pred cccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEe-CCEE
Confidence 99999887 778888887665678999999999999998 89999998 6653
No 147
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.96 E-value=3.7e-31 Score=227.83 Aligned_cols=167 Identities=16% Similarity=0.194 Sum_probs=126.4
Q ss_pred HHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhH-----HHHHHHhhhhhccccccceeee
Q psy2071 68 TEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAA-----MSVAQRVSEEMDCQLGQEVGYS 142 (302)
Q Consensus 68 ~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~v~~~ 142 (302)
.++++.+++|++++|+||||||||||+++|+|+++|++|++.+.|.+...... ..+.+........++.+++.+.
T Consensus 15 ~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~en~~~~ 94 (213)
T TIGR01277 15 MEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQNIGLG 94 (213)
T ss_pred eeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCChhccceEEEeccCccCCCCcHHHHHHhH
Confidence 57899999999999999999999999999999999999999998865422110 0111111111233455554432
Q ss_pred eeec-------------------CCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHH
Q psy2071 143 IRFE-------------------DCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVI 202 (302)
Q Consensus 143 ~~~~-------------------~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll 202 (302)
.... .....++.+..||+||+||++||++++.+|+++|||| |++++|+.. ..+.+++
T Consensus 95 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDE---Pt~~LD~~~~~~~~~~l 171 (213)
T TIGR01277 95 LHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDE---PFSALDPLLREEMLALV 171 (213)
T ss_pred hhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcC---CCccCCHHHHHHHHHHH
Confidence 1100 0011244566799999999999999999999999999 999999887 7788888
Q ss_pred HHcCC-CcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 203 KQRAD-LKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 203 ~~~~~-~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
....+ .+.|++++||+.+++.++||++++|+ .|+.
T Consensus 172 ~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~-~g~i 207 (213)
T TIGR01277 172 KQLCSERQRTLLMVTHHLSDARAIASQIAVVS-QGKI 207 (213)
T ss_pred HHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEE-CCeE
Confidence 76543 47899999999999999999999998 6654
No 148
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.96 E-value=2.3e-31 Score=232.56 Aligned_cols=167 Identities=19% Similarity=0.262 Sum_probs=124.5
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhH--HHHHHHhhh----hhccccccce
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAA--MSVAQRVSE----EMDCQLGQEV 139 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~--~~~~~~~~~----~~~~~~~~~v 139 (302)
+++++++.|++|++++|+|+||||||||+++|+|+++|++|.+.++|.+...... ......+.+ ....++.+++
T Consensus 16 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l 95 (236)
T TIGR03864 16 ALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGVVFQQPTLDLDLSVRQNL 95 (236)
T ss_pred EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEEEeCCCCCCcccCcHHHHH
Confidence 5788999999999999999999999999999999999999999998865321110 000111111 1122333333
Q ss_pred eeeee-------------------ecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHH
Q psy2071 140 GYSIR-------------------FEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLK 199 (302)
Q Consensus 140 ~~~~~-------------------~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~ 199 (302)
.+... +......++.+..||+||+||++||+||+.+|+++|||| |++++|+.. ..+.
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDE---P~~~LD~~~~~~l~ 172 (236)
T TIGR03864 96 RYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDE---PTVGLDPASRAAIV 172 (236)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC---CccCCCHHHHHHHH
Confidence 22110 000111245567799999999999999999999999999 999999887 7788
Q ss_pred HHHHHcC-CCcEEEEEEecCHHHHHhhccCCCeeeecCc
Q psy2071 200 EVIKQRA-DLKLVIMSATLDAGKFQQYFDNAPLMNVPGR 237 (302)
Q Consensus 200 ~ll~~~~-~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~ 237 (302)
+++.... +.+.|++++||+.+.+.. ||++++|+ .|+
T Consensus 173 ~~l~~~~~~~~~tiii~sH~~~~~~~-~d~i~~l~-~G~ 209 (236)
T TIGR03864 173 AHVRALCRDQGLSVLWATHLVDEIEA-DDRLVVLH-RGR 209 (236)
T ss_pred HHHHHHHHhCCCEEEEEecChhhHhh-CCEEEEEe-CCe
Confidence 8887664 357899999999999975 99999998 665
No 149
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.96 E-value=2.1e-31 Score=230.94 Aligned_cols=169 Identities=17% Similarity=0.174 Sum_probs=126.4
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhh---HHHHHHHhhhhhccccccceeee
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVA---AMSVAQRVSEEMDCQLGQEVGYS 142 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~v~~~ 142 (302)
+++++++.+++|++++|+|+||||||||+++|+|+++|++|.+.+.|....... ...+.+........++.+++.+.
T Consensus 15 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~~~~~~~~~q~~~~~~~~t~~~~~~~~ 94 (223)
T TIGR03740 15 AVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIGSLIESPPLYENLTARENLKVH 94 (223)
T ss_pred EEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccccccEEEEcCCCCccccCCHHHHHHHH
Confidence 578899999999999999999999999999999999999999998875432110 00001110011112333333211
Q ss_pred ee---------------ecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcC
Q psy2071 143 IR---------------FEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVIKQRA 206 (302)
Q Consensus 143 ~~---------------~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~ 206 (302)
.. +......+..+..||+||+||+++|+|++.+|+++|||| |++++|+.. ..+.+++.+..
T Consensus 95 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~llllDE---P~~~LD~~~~~~l~~~L~~~~ 171 (223)
T TIGR03740 95 TTLLGLPDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDE---PTNGLDPIGIQELRELIRSFP 171 (223)
T ss_pred HHHcCCCHHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECC---CccCCCHHHHHHHHHHHHHHH
Confidence 10 000111244567799999999999999999999999999 999999887 78888888765
Q ss_pred CCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 207 DLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 207 ~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
+.+.+++++|||.+++.++||++++|+ .|+.
T Consensus 172 ~~~~tiii~sH~~~~~~~~~d~i~~l~-~g~i 202 (223)
T TIGR03740 172 EQGITVILSSHILSEVQQLADHIGIIS-EGVL 202 (223)
T ss_pred HCCCEEEEEcCCHHHHHHhcCEEEEEe-CCEE
Confidence 568899999999999999999999998 6664
No 150
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.96 E-value=2.9e-31 Score=231.93 Aligned_cols=172 Identities=15% Similarity=0.173 Sum_probs=126.4
Q ss_pred hhHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhh--HHHHHHHhh-----hhhcccc
Q psy2071 63 VFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVA--AMSVAQRVS-----EEMDCQL 135 (302)
Q Consensus 63 ~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~--~~~~~~~~~-----~~~~~~~ 135 (302)
...+++++++.|++|++++|+|+||||||||+++|+|+++|++|++.+.|....... .......+. .....++
T Consensus 33 ~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~tv 112 (236)
T cd03267 33 EVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLPV 112 (236)
T ss_pred CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccchhhcccEEEEcCCccccCCCCcH
Confidence 334689999999999999999999999999999999999999999999875421100 000000000 0111222
Q ss_pred ccceeeee------------------ee-cCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-
Q psy2071 136 GQEVGYSI------------------RF-EDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM- 195 (302)
Q Consensus 136 ~~~v~~~~------------------~~-~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~- 195 (302)
.+++.+.. .. ......++.+..||+||+||+++|++|+.+|++||||| |++++|+..
T Consensus 113 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDE---Pt~~LD~~~~ 189 (236)
T cd03267 113 IDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDE---PTIGLDVVAQ 189 (236)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC---CCCCCCHHHH
Confidence 22221110 00 00112245667799999999999999999999999999 999999887
Q ss_pred HHHHHHHHHcCC-CcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 196 GVLKEVIKQRAD-LKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 196 ~~l~~ll~~~~~-~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
..+.+++....+ .+.|||++||+.+++..+||++++|+ .|+.
T Consensus 190 ~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~-~G~i 232 (236)
T cd03267 190 ENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVID-KGRL 232 (236)
T ss_pred HHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEe-CCEE
Confidence 778888876543 47899999999999999999999998 6653
No 151
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.96 E-value=3e-30 Score=214.82 Aligned_cols=129 Identities=19% Similarity=0.221 Sum_probs=109.5
Q ss_pred HHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhhccccccceeeeeeec
Q psy2071 67 RTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRFE 146 (302)
Q Consensus 67 ~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 146 (302)
.+++ +.+++|++++|+||||||||||+++|+|+++|++|++.+.|.. ++|..+..
T Consensus 16 l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~------------------------i~~~~q~~ 70 (177)
T cd03222 16 LVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGIT------------------------PVYKPQYI 70 (177)
T ss_pred EccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEE------------------------EEEEcccC
Confidence 4443 6899999999999999999999999999999999999987642 22222110
Q ss_pred CCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCC-cEEEEEEecCHHHHHh
Q psy2071 147 DCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVIKQRADL-KLVIMSATLDAGKFQQ 224 (302)
Q Consensus 147 ~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~-~~~ii~~thd~~~~~~ 224 (302)
.||+||+||+++|++++.+|+++|||| |++++|+.. ..+.+++.+..+. +.+++++||+++.+..
T Consensus 71 ----------~LSgGq~qrv~laral~~~p~lllLDE---Pts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~ 137 (177)
T cd03222 71 ----------DLSGGELQRVAIAAALLRNATFYLFDE---PSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDY 137 (177)
T ss_pred ----------CCCHHHHHHHHHHHHHhcCCCEEEEEC---CcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHH
Confidence 199999999999999999999999999 999999887 7777777765444 4899999999999999
Q ss_pred hccCCCeee
Q psy2071 225 YFDNAPLMN 233 (302)
Q Consensus 225 ~~d~~~~l~ 233 (302)
+||++++|+
T Consensus 138 ~~d~i~~l~ 146 (177)
T cd03222 138 LSDRIHVFE 146 (177)
T ss_pred hCCEEEEEc
Confidence 999999987
No 152
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.96 E-value=1.5e-31 Score=236.01 Aligned_cols=169 Identities=19% Similarity=0.188 Sum_probs=127.0
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhh-------------HHHHHHH---hh-
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVA-------------AMSVAQR---VS- 128 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~-------------~~~~~~~---~~- 128 (302)
+.+++++.|++|++++|+|+||||||||+++|+|+++|++|++.+.|....... ....... +.
T Consensus 15 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q 94 (252)
T TIGR03005 15 VLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKIGMVFQ 94 (252)
T ss_pred EEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccchhHHHHHhhCeEEEec
Confidence 578999999999999999999999999999999999999999999886542110 0000111 11
Q ss_pred ---hhhccccccceeeeee--------------------ecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCC
Q psy2071 129 ---EEMDCQLGQEVGYSIR--------------------FEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAH 185 (302)
Q Consensus 129 ---~~~~~~~~~~v~~~~~--------------------~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~ 185 (302)
.....++.+++.+... +......+..+..||+||+||++||+||+.+|++|||||
T Consensus 95 ~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE-- 172 (252)
T TIGR03005 95 SFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDE-- 172 (252)
T ss_pred CcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHHHHHHHHHHHHcCCCEEEEeC--
Confidence 1112344444432100 000011234556799999999999999999999999999
Q ss_pred CCCcchHHHH-HHHHHHHHHcCC-CcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 186 ERTLATDILM-GVLKEVIKQRAD-LKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 186 ~p~~~lD~~~-~~l~~ll~~~~~-~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
|++++|+.. ..+.+++.+..+ .+.|+|++||+++.+..+||++++|+ .|+.
T Consensus 173 -P~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~-~G~i 225 (252)
T TIGR03005 173 -VTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFD-KGRI 225 (252)
T ss_pred -CcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEE-CCEE
Confidence 999999887 778888876544 48899999999999999999999998 7764
No 153
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.96 E-value=3.9e-31 Score=232.68 Aligned_cols=168 Identities=18% Similarity=0.193 Sum_probs=125.9
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhccccc-----CCCEEEeecCchhh--hH---HHHHHHhhhh---hc
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKS-----VGAKAVACTQPRRV--AA---MSVAQRVSEE---MD 132 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~-----~G~~~i~~~~~~~~--~~---~~~~~~~~~~---~~ 132 (302)
+.+++++.|++|++++|+|+||||||||+++|+|+++|+ +|++.++|.+.... .. ......+.+. ..
T Consensus 16 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~ 95 (247)
T TIGR00972 16 ALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPFP 95 (247)
T ss_pred eecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHHHhheEEEecCcccCC
Confidence 578999999999999999999999999999999999988 99999988654221 00 0000111111 11
Q ss_pred cccccceeeeeeec-------------------CC-----CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCC
Q psy2071 133 CQLGQEVGYSIRFE-------------------DC-----SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERT 188 (302)
Q Consensus 133 ~~~~~~v~~~~~~~-------------------~~-----~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~ 188 (302)
.++.+++.+..... .. ...++.+..||+||+||++||+||+.+|++||||| |+
T Consensus 96 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDE---Pt 172 (247)
T TIGR00972 96 MSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDE---PT 172 (247)
T ss_pred CCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC---Cc
Confidence 23333332211000 01 11245567899999999999999999999999999 99
Q ss_pred cchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 189 LATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 189 ~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
+++|+.. ..+.+++....+ +.|+|++||+++.+..+||++++|+ .|+.
T Consensus 173 ~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~~~~~~~d~i~~l~-~G~i 221 (247)
T TIGR00972 173 SALDPIATGKIEELIQELKK-KYTIVIVTHNMQQAARISDRTAFFY-DGEL 221 (247)
T ss_pred ccCCHHHHHHHHHHHHHHHh-cCeEEEEecCHHHHHHhCCEEEEEE-CCEE
Confidence 9999887 778888887655 3799999999999999999999998 6653
No 154
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=3.7e-31 Score=227.96 Aligned_cols=164 Identities=16% Similarity=0.122 Sum_probs=123.0
Q ss_pred HHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhh----hHHHHH---HHhhh----hhcccccc
Q psy2071 69 EFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRV----AAMSVA---QRVSE----EMDCQLGQ 137 (302)
Q Consensus 69 ~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~----~~~~~~---~~~~~----~~~~~~~~ 137 (302)
++++.|++ ++++|+|+||||||||+++|+|+++|++|++.+.|.+.... ...... ..+.+ ....++.+
T Consensus 16 ~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~ 94 (214)
T cd03297 16 KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLNVRE 94 (214)
T ss_pred CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCCHHH
Confidence 89999999 99999999999999999999999999999999988653210 000000 11111 11234444
Q ss_pred ceeeeeee-----------------cCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHH
Q psy2071 138 EVGYSIRF-----------------EDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLK 199 (302)
Q Consensus 138 ~v~~~~~~-----------------~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~ 199 (302)
++.+.... ......++.+..||+||+||++||+|++.+|+++|||| |++++|+.. ..+.
T Consensus 95 ~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDE---Pt~~LD~~~~~~l~ 171 (214)
T cd03297 95 NLAFGLKRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDE---PFSALDRALRLQLL 171 (214)
T ss_pred HHHHHHhhCCHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcC---CcccCCHHHHHHHH
Confidence 43321110 00011244567799999999999999999999999999 999999887 7788
Q ss_pred HHHHHcCC-CcEEEEEEecCHHHHHhhccCCCeeeecCc
Q psy2071 200 EVIKQRAD-LKLVIMSATLDAGKFQQYFDNAPLMNVPGR 237 (302)
Q Consensus 200 ~ll~~~~~-~~~~ii~~thd~~~~~~~~d~~~~l~i~g~ 237 (302)
+++....+ .+.|+|++||+.+++..+||++++|+ .|+
T Consensus 172 ~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~-~G~ 209 (214)
T cd03297 172 PELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVME-DGR 209 (214)
T ss_pred HHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEE-CCE
Confidence 88876644 37899999999999999999999998 665
No 155
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=2.3e-31 Score=243.27 Aligned_cols=169 Identities=15% Similarity=0.155 Sum_probs=124.9
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhccc----ccCCCEEEeecCchhhhHHHH-------HHHhhhh----
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYS----KSVGAKAVACTQPRRVAAMSV-------AQRVSEE---- 130 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~----~~~G~~~i~~~~~~~~~~~~~-------~~~~~~~---- 130 (302)
+++++++.|++||+++|+|+||||||||+++|+|+++ |++|++.++|.+......... ...+.+.
T Consensus 22 ~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~Q~~~~~ 101 (330)
T PRK15093 22 AVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQSC 101 (330)
T ss_pred EEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCcchh
Confidence 5789999999999999999999999999999999986 578999998865422111000 0111111
Q ss_pred --hccccccceeeee------------------------eecCCC----CccccccccCHHHHHHHhccccCCCCCcEEE
Q psy2071 131 --MDCQLGQEVGYSI------------------------RFEDCS----SPKTVLKYMTDGMLLREGMSDPMLENYQVIL 180 (302)
Q Consensus 131 --~~~~~~~~v~~~~------------------------~~~~~~----~~~~~~~~lS~G~~qr~~la~al~~~p~lli 180 (302)
...++.+++.+.+ ...... ..++....|||||+||++||+||+.+|++||
T Consensus 102 l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~lli 181 (330)
T PRK15093 102 LDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTEGECQKVMIAIALANQPRLLI 181 (330)
T ss_pred cCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHCCCCEEE
Confidence 1122222221100 000010 1134556799999999999999999999999
Q ss_pred EcCCCCCCcchHHHH-HHHHHHHHHcCC-CcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 181 LDEAHERTLATDILM-GVLKEVIKQRAD-LKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 181 LDE~~~p~~~lD~~~-~~l~~ll~~~~~-~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
+|| ||+++|+.. ..+.+++.+..+ .+.|+|++|||++.+.++||++++|+ .|+.
T Consensus 182 lDE---Pts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~-~G~i 237 (330)
T PRK15093 182 ADE---PTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLY-CGQT 237 (330)
T ss_pred EeC---CCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEE-CCEE
Confidence 999 999999887 778888877654 48999999999999999999999998 5654
No 156
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.96 E-value=1.2e-30 Score=251.03 Aligned_cols=169 Identities=12% Similarity=0.140 Sum_probs=127.2
Q ss_pred HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHH---Hhhhh-----------
Q psy2071 65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQ---RVSEE----------- 130 (302)
Q Consensus 65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~---~~~~~----------- 130 (302)
.++++++++|++|++++|+||||||||||+++|+|+++|++|.+.+.+............. .+.+.
T Consensus 17 ~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~ 96 (490)
T PRK10938 17 KTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSDEWQRNNTDMLSPGED 96 (490)
T ss_pred eecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhceeccCcchhhcccchh
Confidence 3689999999999999999999999999999999999999999988775432111110011 11110
Q ss_pred -hccccccceeee----------e-eecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HH
Q psy2071 131 -MDCQLGQEVGYS----------I-RFEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GV 197 (302)
Q Consensus 131 -~~~~~~~~v~~~----------~-~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~ 197 (302)
...++.+++... + .+......++.+..|||||+||++||+||+.+|++||||| ||+++|+.. ..
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDE---Pt~~LD~~~~~~ 173 (490)
T PRK10938 97 DTGRTTAEIIQDEVKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDE---PFDGLDVASRQQ 173 (490)
T ss_pred hccccHHHhcccchhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcC---CcccCCHHHHHH
Confidence 012233322110 0 0111112356678899999999999999999999999999 999999888 78
Q ss_pred HHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCc
Q psy2071 198 LKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGR 237 (302)
Q Consensus 198 l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~ 237 (302)
+.+++....+.+.|||++|||++.+.++||++++|+ .|+
T Consensus 174 l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~-~G~ 212 (490)
T PRK10938 174 LAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLA-DCT 212 (490)
T ss_pred HHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEE-CCE
Confidence 888888766568899999999999999999999998 554
No 157
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=5.1e-31 Score=229.84 Aligned_cols=166 Identities=13% Similarity=0.170 Sum_probs=125.6
Q ss_pred HHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhh-----HHHHHHHhhhhhccccccceeeee
Q psy2071 69 EFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVA-----AMSVAQRVSEEMDCQLGQEVGYSI 143 (302)
Q Consensus 69 ~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~v~~~~ 143 (302)
++++.|++|++++|+|+||||||||+++|+|+++|++|++.+.|....... ...+.+........++.+++.+..
T Consensus 17 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~ 96 (232)
T PRK10771 17 RFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGLGL 96 (232)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccEEEEecccccccCCcHHHHHhccc
Confidence 789999999999999999999999999999999999999999886532211 001111111112235555554332
Q ss_pred eec-------------------CCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHH
Q psy2071 144 RFE-------------------DCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVIK 203 (302)
Q Consensus 144 ~~~-------------------~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~ 203 (302)
... .....++.+..||+||+||++||+|++.+|+++|||| |++++|+.. ..+.+++.
T Consensus 97 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDE---P~~gLD~~~~~~~~~~l~ 173 (232)
T PRK10771 97 NPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDE---PFSALDPALRQEMLTLVS 173 (232)
T ss_pred ccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC---CcccCCHHHHHHHHHHHH
Confidence 110 0001234556799999999999999999999999999 999999887 77888887
Q ss_pred HcC-CCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 204 QRA-DLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 204 ~~~-~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
... +.+.|+|++||+.+++.++||++++|+ .|+.
T Consensus 174 ~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~-~g~i 208 (232)
T PRK10771 174 QVCQERQLTLLMVSHSLEDAARIAPRSLVVA-DGRI 208 (232)
T ss_pred HHHHhcCCEEEEEECCHHHHHHhCCEEEEEE-CCEE
Confidence 654 347899999999999999999999998 6664
No 158
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.96 E-value=8.7e-31 Score=223.33 Aligned_cols=158 Identities=16% Similarity=0.144 Sum_probs=121.5
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhc--ccccCCCEEEeecCchhhhHHHHHHHhhhhhccccccceeeee
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVE--YSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSI 143 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~--~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 143 (302)
+.+++++.+++|++++|+|+||||||||+++|+|+ +.|++|++.++|.+........... ..++|..
T Consensus 15 ~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~-----------~~i~~v~ 83 (200)
T cd03217 15 ILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERAR-----------LGIFLAF 83 (200)
T ss_pred eeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhh-----------CcEEEee
Confidence 57899999999999999999999999999999999 4799999999987643321110000 0122211
Q ss_pred eecCC----C---CccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEE
Q psy2071 144 RFEDC----S---SPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVIKQRADLKLVIMSA 215 (302)
Q Consensus 144 ~~~~~----~---~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~ 215 (302)
+.... . ........||+||+||+++|++++.+|+++|||| |++++|... ..+.+++.+..+.+.|++++
T Consensus 84 q~~~~~~~~~~~~~l~~~~~~LS~G~~qrv~laral~~~p~illlDE---Pt~~LD~~~~~~l~~~L~~~~~~~~tiii~ 160 (200)
T cd03217 84 QYPPEIPGVKNADFLRYVNEGFSGGEKKRNEILQLLLLEPDLAILDE---PDSGLDIDALRLVAEVINKLREEGKSVLII 160 (200)
T ss_pred cChhhccCccHHHHHhhccccCCHHHHHHHHHHHHHhcCCCEEEEeC---CCccCCHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 11000 0 0012235799999999999999999999999999 999999877 77888887765557899999
Q ss_pred ecCHHHHHh-hccCCCeeeecCcC
Q psy2071 216 TLDAGKFQQ-YFDNAPLMNVPGRT 238 (302)
Q Consensus 216 thd~~~~~~-~~d~~~~l~i~g~~ 238 (302)
||+++.+.. +||++++|+ .|+.
T Consensus 161 sh~~~~~~~~~~d~i~~l~-~G~i 183 (200)
T cd03217 161 THYQRLLDYIKPDRVHVLY-DGRI 183 (200)
T ss_pred ecCHHHHHHhhCCEEEEEE-CCEE
Confidence 999999988 799999998 6653
No 159
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.96 E-value=2.6e-31 Score=235.34 Aligned_cols=170 Identities=17% Similarity=0.215 Sum_probs=126.1
Q ss_pred HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecC-----chhhhHHH-------HHHHhhhhh-
Q psy2071 65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQ-----PRRVAAMS-------VAQRVSEEM- 131 (302)
Q Consensus 65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~-----~~~~~~~~-------~~~~~~~~~- 131 (302)
.+++++++.|++|++++|+|+||||||||+++|+|+++|++|++.+.|.+ ........ ...++.+..
T Consensus 20 ~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~~~~~~~~i~~v~q~~~ 99 (258)
T PRK11701 20 KGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERRRLLRTEWGFVHQHPR 99 (258)
T ss_pred eeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHHHHHhhcceEEEeeCcc
Confidence 35789999999999999999999999999999999999999999998865 32111000 001111111
Q ss_pred -----ccccccceeee-------------------eeecCC--CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCC
Q psy2071 132 -----DCQLGQEVGYS-------------------IRFEDC--SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAH 185 (302)
Q Consensus 132 -----~~~~~~~v~~~-------------------~~~~~~--~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~ 185 (302)
..++.+++.+. +..... ...++.+..||+||+||++||+||+.+|++|||||
T Consensus 100 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~laral~~~p~llllDE-- 177 (258)
T PRK11701 100 DGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIARNLVTHPRLVFMDE-- 177 (258)
T ss_pred cccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHHHHHHHhcCCCEEEEcC--
Confidence 11222222110 000011 12245677899999999999999999999999999
Q ss_pred CCCcchHHHH-HHHHHHHHHcCC-CcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 186 ERTLATDILM-GVLKEVIKQRAD-LKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 186 ~p~~~lD~~~-~~l~~ll~~~~~-~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
|++++|+.. ..+.++++...+ .+.|||++||+.+.+..+||++++|+ .|+.
T Consensus 178 -Pt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~-~g~i 230 (258)
T PRK11701 178 -PTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMK-QGRV 230 (258)
T ss_pred -CcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEE-CCEE
Confidence 999999877 778888776543 47899999999999999999999998 6654
No 160
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=3.7e-31 Score=236.35 Aligned_cols=169 Identities=15% Similarity=0.162 Sum_probs=128.3
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchh--hhHHHHH---HHhhh-----hhcccc
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRR--VAAMSVA---QRVSE-----EMDCQL 135 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~--~~~~~~~---~~~~~-----~~~~~~ 135 (302)
+.+++++.|++||+++|+|+||||||||+++|+|+++|++|++.++|..... ....... .++.+ ....++
T Consensus 17 ~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv 96 (275)
T PRK13639 17 ALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAPTV 96 (275)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhheEEEeeChhhhhccccH
Confidence 5788999999999999999999999999999999999999999998865321 0000001 11111 112344
Q ss_pred ccceeeeee-------------------ecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-
Q psy2071 136 GQEVGYSIR-------------------FEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM- 195 (302)
Q Consensus 136 ~~~v~~~~~-------------------~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~- 195 (302)
.+++.+... +......++.+..||+||+||++||+||+.+|++||||| |++++|+..
T Consensus 97 ~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDE---Pt~gLD~~~~ 173 (275)
T PRK13639 97 EEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDE---PTSGLDPMGA 173 (275)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC---CCcCCCHHHH
Confidence 444432110 000012345667899999999999999999999999999 999999887
Q ss_pred HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 196 GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 196 ~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
..+.+++....+.+.||+++|||++.+.++||++++|+ .|+.
T Consensus 174 ~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~-~G~i 215 (275)
T PRK13639 174 SQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMS-DGKI 215 (275)
T ss_pred HHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEE-CCEE
Confidence 77888888765558999999999999999999999998 5653
No 161
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.96 E-value=3.1e-31 Score=234.50 Aligned_cols=170 Identities=16% Similarity=0.159 Sum_probs=129.2
Q ss_pred HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHH---HHHhhh----hhcccccc
Q psy2071 65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSV---AQRVSE----EMDCQLGQ 137 (302)
Q Consensus 65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~---~~~~~~----~~~~~~~~ 137 (302)
.+++++++.|++|++++|+|+||||||||+++|+|+++|++|++.++|.+......... ..++.+ ....++.+
T Consensus 15 ~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e 94 (256)
T TIGR03873 15 LIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALVEQDSDTAVPLTVRD 94 (256)
T ss_pred EEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEEecccCccCCCCCHHH
Confidence 36789999999999999999999999999999999999999999998865432111110 111111 12234444
Q ss_pred ceeeeee-----------------------ecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHH
Q psy2071 138 EVGYSIR-----------------------FEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDIL 194 (302)
Q Consensus 138 ~v~~~~~-----------------------~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~ 194 (302)
++.+... +......++.+..||+||+||++||+|++.+|+++|||| |++++|+.
T Consensus 95 ~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDE---Pt~~LD~~ 171 (256)
T TIGR03873 95 VVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQEPKLLLLDE---PTNHLDVR 171 (256)
T ss_pred HHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcC---ccccCCHH
Confidence 4432110 000011234556799999999999999999999999999 99999987
Q ss_pred H-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 195 M-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 195 ~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
. ..+.+++.+..+.+.|||++||+++.+.++||++++|+ .|+.
T Consensus 172 ~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~-~G~i 215 (256)
T TIGR03873 172 AQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLD-GGRV 215 (256)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEe-CCCE
Confidence 7 77888888766557899999999999999999999998 6654
No 162
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=7.4e-31 Score=231.33 Aligned_cols=168 Identities=14% Similarity=0.128 Sum_probs=126.7
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccc-----cCCCEEEeecCchhhhHHHH-------HHHhhhhhcc
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSK-----SVGAKAVACTQPRRVAAMSV-------AQRVSEEMDC 133 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~-----~~G~~~i~~~~~~~~~~~~~-------~~~~~~~~~~ 133 (302)
+.+++++.|++|++++|+|+||||||||+++|+|+++| ++|++.++|........... .+........
T Consensus 18 ~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~ 97 (250)
T PRK14247 18 VLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPNL 97 (250)
T ss_pred eeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhccEEEEeccCccCCCC
Confidence 57899999999999999999999999999999999874 68999998865322111110 1111111223
Q ss_pred ccccceeeeeeec--------------------CC-----CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCC
Q psy2071 134 QLGQEVGYSIRFE--------------------DC-----SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERT 188 (302)
Q Consensus 134 ~~~~~v~~~~~~~--------------------~~-----~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~ 188 (302)
++.+++.+..... .. ...++.+..||+||+||+++|+||+.+|++||||| |+
T Consensus 98 tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDE---P~ 174 (250)
T PRK14247 98 SIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADE---PT 174 (250)
T ss_pred cHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcC---CC
Confidence 4444443221100 00 01245567899999999999999999999999999 99
Q ss_pred cchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 189 LATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 189 ~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
+++|+.. ..+.+++....+ +.|++++||+++++.++||++++|+ .|+.
T Consensus 175 ~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~-~G~i 223 (250)
T PRK14247 175 ANLDPENTAKIESLFLELKK-DMTIVLVTHFPQQAARISDYVAFLY-KGQI 223 (250)
T ss_pred ccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhcCEEEEEE-CCeE
Confidence 9999887 778888887654 7899999999999999999999998 6654
No 163
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.96 E-value=2e-30 Score=226.99 Aligned_cols=167 Identities=17% Similarity=0.207 Sum_probs=125.3
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHH---Hhhh---hhccccccce
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQ---RVSE---EMDCQLGQEV 139 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~---~~~~---~~~~~~~~~v 139 (302)
+++++++.+++|++++|+|+||||||||+++|+|+++|++|++.++|............. .+.+ ....++.+++
T Consensus 18 ~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l 97 (238)
T cd03249 18 ILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIAENI 97 (238)
T ss_pred ceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEEEECCchhhhhhhHHHHh
Confidence 578899999999999999999999999999999999999999999886532211100000 0000 1112444444
Q ss_pred eeeeeec------------C------------CCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH
Q psy2071 140 GYSIRFE------------D------------CSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM 195 (302)
Q Consensus 140 ~~~~~~~------------~------------~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~ 195 (302)
.+..... . ....+..+..||+||+||++||++|+.+|++||||| |++++|+..
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDE---P~~gLD~~~ 174 (238)
T cd03249 98 RYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDE---ATSALDAES 174 (238)
T ss_pred hccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCEEEEeC---ccccCCHHH
Confidence 3321100 0 001123456799999999999999999999999999 999999887
Q ss_pred -HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 196 -GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 196 -~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
..+.+++.... .+.+++++||+.+++. +||++++|+ .|+.
T Consensus 175 ~~~l~~~l~~~~-~g~~vi~~sh~~~~~~-~~d~v~~l~-~G~i 215 (238)
T cd03249 175 EKLVQEALDRAM-KGRTTIVIAHRLSTIR-NADLIAVLQ-NGQV 215 (238)
T ss_pred HHHHHHHHHHhc-CCCEEEEEeCCHHHHh-hCCEEEEEE-CCEE
Confidence 78888888766 5889999999999997 899999998 6764
No 164
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.96 E-value=7.1e-31 Score=217.37 Aligned_cols=148 Identities=14% Similarity=0.183 Sum_probs=117.5
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhhccccccceeeeeee
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRF 145 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 145 (302)
+++++++.|++|++++|+|+||||||||+++|+|+++|++|++.+.+. +.++....... ....++.+++.+.
T Consensus 16 ~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~--~~i~~~~q~~~---~~~~tv~~nl~~~--- 87 (166)
T cd03223 16 LLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG--EDLLFLPQRPY---LPLGTLREQLIYP--- 87 (166)
T ss_pred eeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC--ceEEEECCCCc---cccccHHHHhhcc---
Confidence 578899999999999999999999999999999999999999988653 11111111110 1123445554432
Q ss_pred cCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHh
Q psy2071 146 EDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQ 224 (302)
Q Consensus 146 ~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~ 224 (302)
....||+||+||+++|+|++.+|+++|||| |++++|+.. ..+.+++... +.|++++||+.+.. .
T Consensus 88 --------~~~~LS~G~~~rv~laral~~~p~~lllDE---Pt~~LD~~~~~~l~~~l~~~---~~tiiivsh~~~~~-~ 152 (166)
T cd03223 88 --------WDDVLSGGEQQRLAFARLLLHKPKFVFLDE---ATSALDEESEDRLYQLLKEL---GITVISVGHRPSLW-K 152 (166)
T ss_pred --------CCCCCCHHHHHHHHHHHHHHcCCCEEEEEC---CccccCHHHHHHHHHHHHHh---CCEEEEEeCChhHH-h
Confidence 357899999999999999999999999999 999999877 7777887765 57999999999865 6
Q ss_pred hccCCCeeeecC
Q psy2071 225 YFDNAPLMNVPG 236 (302)
Q Consensus 225 ~~d~~~~l~i~g 236 (302)
+||++++|+-+|
T Consensus 153 ~~d~i~~l~~~~ 164 (166)
T cd03223 153 FHDRVLDLDGEG 164 (166)
T ss_pred hCCEEEEEcCCC
Confidence 999999987443
No 165
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.96 E-value=2.2e-31 Score=231.25 Aligned_cols=170 Identities=17% Similarity=0.178 Sum_probs=126.1
Q ss_pred HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhccc---ccCCCEEEeecCchhhhHH----HHHHHhhhhhcccccc
Q psy2071 65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYS---KSVGAKAVACTQPRRVAAM----SVAQRVSEEMDCQLGQ 137 (302)
Q Consensus 65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~---~~~G~~~i~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 137 (302)
.+.+++++.|++|++++|+||||||||||+++|+|+++ |++|++.+.|.+....... .+.+........++.+
T Consensus 21 ~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~tv~e 100 (226)
T cd03234 21 RILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKCVAYVRQDDILLPGLTVRE 100 (226)
T ss_pred ccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhcccEEEeCCCCccCcCCcHHH
Confidence 46889999999999999999999999999999999999 8999999988653211000 0001101111223333
Q ss_pred ceeeeee-----------------------ecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHH
Q psy2071 138 EVGYSIR-----------------------FEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDIL 194 (302)
Q Consensus 138 ~v~~~~~-----------------------~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~ 194 (302)
++.+... +......++.+..||+||+||+++|++|+.+|+++|||| |++++|+.
T Consensus 101 nl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~illlDE---P~~gLD~~ 177 (226)
T cd03234 101 TLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDE---PTSGLDSF 177 (226)
T ss_pred HHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHHhCCCEEEEeC---CCcCCCHH
Confidence 3322100 000011234567799999999999999999999999999 99999988
Q ss_pred H-HHHHHHHHHcCCCcEEEEEEecCH-HHHHhhccCCCeeeecCcC
Q psy2071 195 M-GVLKEVIKQRADLKLVIMSATLDA-GKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 195 ~-~~l~~ll~~~~~~~~~ii~~thd~-~~~~~~~d~~~~l~i~g~~ 238 (302)
. ..+.+++.+..+.+.|++++||+. +++.++||++++|+ .|+.
T Consensus 178 ~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~-~G~i 222 (226)
T cd03234 178 TALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLS-SGEI 222 (226)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEe-CCEE
Confidence 7 778888877655578999999998 68999999999998 6653
No 166
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.96 E-value=3e-30 Score=208.62 Aligned_cols=128 Identities=23% Similarity=0.296 Sum_probs=112.5
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhhccccccceeeeeee
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRF 145 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 145 (302)
+.+++++.+++|++++|+|+||||||||+++|+|+++|++|++.+++. ..++|..+
T Consensus 15 ~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~-----------------------~~i~~~~~- 70 (144)
T cd03221 15 LLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST-----------------------VKIGYFEQ- 70 (144)
T ss_pred EEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe-----------------------EEEEEEcc-
Confidence 467889999999999999999999999999999999999999998762 12333322
Q ss_pred cCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHh
Q psy2071 146 EDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQ 224 (302)
Q Consensus 146 ~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~ 224 (302)
||+||+||++||+||+.+|+++|||| |++++|... ..+.+++++. +.|++++||+.+.+..
T Consensus 71 ------------lS~G~~~rv~laral~~~p~illlDE---P~~~LD~~~~~~l~~~l~~~---~~til~~th~~~~~~~ 132 (144)
T cd03221 71 ------------LSGGEKMRLALAKLLLENPNLLLLDE---PTNHLDLESIEALEEALKEY---PGTVILVSHDRYFLDQ 132 (144)
T ss_pred ------------CCHHHHHHHHHHHHHhcCCCEEEEeC---CccCCCHHHHHHHHHHHHHc---CCEEEEEECCHHHHHH
Confidence 99999999999999999999999999 999999877 7788888765 4689999999999999
Q ss_pred hccCCCeeeecC
Q psy2071 225 YFDNAPLMNVPG 236 (302)
Q Consensus 225 ~~d~~~~l~i~g 236 (302)
+||++++|+ .|
T Consensus 133 ~~d~v~~l~-~g 143 (144)
T cd03221 133 VATKIIELE-DG 143 (144)
T ss_pred hCCEEEEEe-CC
Confidence 999999987 44
No 167
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.96 E-value=8.9e-31 Score=252.45 Aligned_cols=168 Identities=15% Similarity=0.115 Sum_probs=129.6
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhH--------HHHHHHhhhhhcccccc
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAA--------MSVAQRVSEEMDCQLGQ 137 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~--------~~~~~~~~~~~~~~~~~ 137 (302)
+++++++.|++|++++|+||||||||||+++|+|+++|++|++.+.|........ ..+.+........++.+
T Consensus 19 ~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e 98 (501)
T PRK10762 19 ALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGIGIIHQELNLIPQLTIAE 98 (501)
T ss_pred EeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEEcchhccCCCcHHH
Confidence 5789999999999999999999999999999999999999999998865321110 01111111122345556
Q ss_pred ceeeeeeec-----------------------CCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHH
Q psy2071 138 EVGYSIRFE-----------------------DCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDIL 194 (302)
Q Consensus 138 ~v~~~~~~~-----------------------~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~ 194 (302)
++.+..... .....++.+..||+||+||++||+||+.+|++||||| ||+++|+.
T Consensus 99 ~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDE---Pt~~LD~~ 175 (501)
T PRK10762 99 NIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESKVIIMDE---PTDALTDT 175 (501)
T ss_pred HhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHhcCCCEEEEeC---CcCCCCHH
Confidence 554432110 0011244567899999999999999999999999999 99999988
Q ss_pred H-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCc
Q psy2071 195 M-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGR 237 (302)
Q Consensus 195 ~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~ 237 (302)
. ..+.+++....+.+.|||++|||++++..+||++++|+ .|+
T Consensus 176 ~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~-~G~ 218 (501)
T PRK10762 176 ETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFR-DGQ 218 (501)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEe-CCE
Confidence 7 77888887765568899999999999999999999998 554
No 168
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.96 E-value=5.9e-31 Score=254.08 Aligned_cols=169 Identities=14% Similarity=0.085 Sum_probs=131.0
Q ss_pred HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHH--------HHHHHhhhhhccccc
Q psy2071 65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAM--------SVAQRVSEEMDCQLG 136 (302)
Q Consensus 65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~--------~~~~~~~~~~~~~~~ 136 (302)
.+++++++.|++|++++|+||||||||||+++|+|+++|++|++.+.|......... .+.+........++.
T Consensus 25 ~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 104 (510)
T PRK15439 25 EVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPNLSVK 104 (510)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEeccCccCCCCcHH
Confidence 357899999999999999999999999999999999999999999988654321110 111111112234555
Q ss_pred cceeeeeee---------------cCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHH
Q psy2071 137 QEVGYSIRF---------------EDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKE 200 (302)
Q Consensus 137 ~~v~~~~~~---------------~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ 200 (302)
+++.+.... ......++.+..|||||+||++||+||+.+|++||||| ||+++|+.. ..+.+
T Consensus 105 e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLDE---Pt~~LD~~~~~~l~~ 181 (510)
T PRK15439 105 ENILFGLPKRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDE---PTASLTPAETERLFS 181 (510)
T ss_pred HHhhcccccchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEEC---CCCCCCHHHHHHHHH
Confidence 555443211 00112345677899999999999999999999999999 999999887 77888
Q ss_pred HHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCc
Q psy2071 201 VIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGR 237 (302)
Q Consensus 201 ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~ 237 (302)
+++...+.|.+||++|||++.+..+||++++|+ .|+
T Consensus 182 ~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~-~G~ 217 (510)
T PRK15439 182 RIRELLAQGVGIVFISHKLPEIRQLADRISVMR-DGT 217 (510)
T ss_pred HHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEE-CCE
Confidence 888766568899999999999999999999998 554
No 169
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.96 E-value=6.4e-31 Score=224.36 Aligned_cols=163 Identities=14% Similarity=0.071 Sum_probs=123.6
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHH---hhh----hhccccccc
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQR---VSE----EMDCQLGQE 138 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~---~~~----~~~~~~~~~ 138 (302)
+.+++++.|++|++++|+|+||||||||+++|+|+++|++|++.+.|.+...... ..... +.+ ....++.++
T Consensus 15 ~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~-~~~~~i~~~~q~~~~~~~~tv~e~ 93 (201)
T cd03231 15 LFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRD-SIARGLLYLGHAPGIKTTLSVLEN 93 (201)
T ss_pred eeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccH-HhhhheEEeccccccCCCcCHHHH
Confidence 5789999999999999999999999999999999999999999998865421110 11111 111 112344444
Q ss_pred eeeeeee-------------cCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHHH
Q psy2071 139 VGYSIRF-------------EDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVIKQ 204 (302)
Q Consensus 139 v~~~~~~-------------~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~ 204 (302)
+.+.... ......++.+..||+||+||+++|+||+.+|++||||| |++++|+.. ..+.+++..
T Consensus 94 l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDE---Pt~~LD~~~~~~l~~~l~~ 170 (201)
T cd03231 94 LRFWHADHSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDE---PTTALDKAGVARFAEAMAG 170 (201)
T ss_pred HHhhcccccHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeC---CCCCCCHHHHHHHHHHHHH
Confidence 4332110 00012345667899999999999999999999999999 999999887 778888876
Q ss_pred cCCCcEEEEEEecCHHHHHhhccCCCee
Q psy2071 205 RADLKLVIMSATLDAGKFQQYFDNAPLM 232 (302)
Q Consensus 205 ~~~~~~~ii~~thd~~~~~~~~d~~~~l 232 (302)
..+.+.|++++||+...+..+|++++++
T Consensus 171 ~~~~g~tiii~sH~~~~~~~~~~~~~~~ 198 (201)
T cd03231 171 HCARGGMVVLTTHQDLGLSEAGARELDL 198 (201)
T ss_pred HHhCCCEEEEEecCchhhhhccceeEec
Confidence 6555789999999999999999998765
No 170
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=2.4e-30 Score=225.86 Aligned_cols=167 Identities=16% Similarity=0.189 Sum_probs=125.2
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHH---Hhhh---hhccccccce
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQ---RVSE---EMDCQLGQEV 139 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~---~~~~---~~~~~~~~~v 139 (302)
+.+++++.+++|++++|+||||||||||+++|+|+++|++|++.++|............. .+.+ .+..++.+++
T Consensus 17 ~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~enl 96 (234)
T cd03251 17 VLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAENI 96 (234)
T ss_pred ceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEEeCCCCeeccccHHHHh
Confidence 578899999999999999999999999999999999999999999886532211111111 1111 1122444444
Q ss_pred eeeeee------------------------cCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH
Q psy2071 140 GYSIRF------------------------EDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM 195 (302)
Q Consensus 140 ~~~~~~------------------------~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~ 195 (302)
.+.... ......+..+..||+||+||++||+||+.+|+++|||| |++++|+..
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDE---P~~~LD~~~ 173 (234)
T cd03251 97 AYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDE---ATSALDTES 173 (234)
T ss_pred hccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeC---ccccCCHHH
Confidence 332110 00001123456799999999999999999999999999 999999887
Q ss_pred -HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 196 -GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 196 -~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
..+.+++....+ +.+|+++||+.+++.. ||++++|+ .|+.
T Consensus 174 ~~~l~~~l~~~~~-~~tii~~sh~~~~~~~-~d~v~~l~-~G~i 214 (234)
T cd03251 174 ERLVQAALERLMK-NRTTFVIAHRLSTIEN-ADRIVVLE-DGKI 214 (234)
T ss_pred HHHHHHHHHHhcC-CCEEEEEecCHHHHhh-CCEEEEec-CCeE
Confidence 778888887654 7899999999999976 99999998 6654
No 171
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=4.9e-31 Score=225.22 Aligned_cols=165 Identities=15% Similarity=0.224 Sum_probs=126.4
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhccc---ccCCCEEEeecCchhhhH--H----HHHHHhhhhhccccc
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYS---KSVGAKAVACTQPRRVAA--M----SVAQRVSEEMDCQLG 136 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~---~~~G~~~i~~~~~~~~~~--~----~~~~~~~~~~~~~~~ 136 (302)
+++++++.|++|++++|+|+||||||||+++|+|+++ |++|++.++|.+...... . .+.+........++.
T Consensus 22 il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 101 (202)
T cd03233 22 ILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPTLTVR 101 (202)
T ss_pred eeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhcceEEEEecccccCCCCcHH
Confidence 5788999999999999999999999999999999998 889999998875432210 0 001111112234555
Q ss_pred cceeeeeeecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCC-cE-EEE
Q psy2071 137 QEVGYSIRFEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVIKQRADL-KL-VIM 213 (302)
Q Consensus 137 ~~v~~~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~-~~-~ii 213 (302)
+++.+..... .+..+..||+||+||++||+||+.+|+++|||| |++++|+.. ..+.+++.+..+. +. ++|
T Consensus 102 ~~l~~~~~~~----~~~~~~~LS~Ge~qrl~laral~~~p~llllDE---Pt~~LD~~~~~~~~~~l~~~~~~~~~t~ii 174 (202)
T cd03233 102 ETLDFALRCK----GNEFVRGISGGERKRVSIAEALVSRASVLCWDN---STRGLDSSTALEILKCIRTMADVLKTTTFV 174 (202)
T ss_pred HHHhhhhhhc----cccchhhCCHHHHHHHHHHHHHhhCCCEEEEcC---CCccCCHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 6655433221 455678899999999999999999999999999 999999887 7788888765432 44 456
Q ss_pred EEecCHHHHHhhccCCCeeeecCcC
Q psy2071 214 SATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 214 ~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
+++|+.+.+.++||++++|+ .|+.
T Consensus 175 ~~~h~~~~~~~~~d~i~~l~-~G~i 198 (202)
T cd03233 175 SLYQASDEIYDLFDKVLVLY-EGRQ 198 (202)
T ss_pred EEcCCHHHHHHhCCeEEEEE-CCEE
Confidence 66777899999999999998 6653
No 172
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.96 E-value=4.2e-31 Score=233.32 Aligned_cols=169 Identities=19% Similarity=0.247 Sum_probs=124.4
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecC-----chhhhHHH-------HHHHhhhh---
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQ-----PRRVAAMS-------VAQRVSEE--- 130 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~-----~~~~~~~~-------~~~~~~~~--- 130 (302)
+.+++++.|++|++++|+|+||||||||+++|+|+++|++|++.+.|.. ........ ....+.+.
T Consensus 18 ~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~ 97 (253)
T TIGR02323 18 GCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERRRLMRTEWGFVHQNPRD 97 (253)
T ss_pred EeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHHHHhhhcceEEEEeCccc
Confidence 4789999999999999999999999999999999999999999998754 21111000 00111111
Q ss_pred ---hccccccceeee-------------------e-eecCC-CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCC
Q psy2071 131 ---MDCQLGQEVGYS-------------------I-RFEDC-SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHE 186 (302)
Q Consensus 131 ---~~~~~~~~v~~~-------------------~-~~~~~-~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~ 186 (302)
...++.+++.+. + .+... ...++.+..||+||+||++||+||+.+|++|||||
T Consensus 98 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~vlllDE--- 174 (253)
T TIGR02323 98 GLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDE--- 174 (253)
T ss_pred ccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHHHHHHHhcCCCEEEEcC---
Confidence 111222222110 0 00000 12244667799999999999999999999999999
Q ss_pred CCcchHHHH-HHHHHHHHHcC-CCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 187 RTLATDILM-GVLKEVIKQRA-DLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 187 p~~~lD~~~-~~l~~ll~~~~-~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
|++++|+.. ..+.+++.... +.+.++|++||+.+.+..+||++++|+ .|+.
T Consensus 175 P~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~-~G~i 227 (253)
T TIGR02323 175 PTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQ-QGRV 227 (253)
T ss_pred CCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEE-CCEE
Confidence 999999887 77888887654 347899999999999999999999998 6654
No 173
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=5e-31 Score=237.13 Aligned_cols=169 Identities=15% Similarity=0.117 Sum_probs=125.1
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchh--------hhHHHHHHHhhhh-----hc
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRR--------VAAMSVAQRVSEE-----MD 132 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~--------~~~~~~~~~~~~~-----~~ 132 (302)
+++++++.|++|++++|+|+||||||||+++|+|+++|++|++.+.|.+... ........++.+. ..
T Consensus 26 il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 105 (289)
T PRK13645 26 ALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQ 105 (289)
T ss_pred eeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccccHHHHhccEEEEEeCcchhhhh
Confidence 5788999999999999999999999999999999999999999988754210 0000000011110 11
Q ss_pred cccccceeeee------------------eecCC--CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchH
Q psy2071 133 CQLGQEVGYSI------------------RFEDC--SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATD 192 (302)
Q Consensus 133 ~~~~~~v~~~~------------------~~~~~--~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD 192 (302)
.++.+++.+.. ..... ...++.+..||+||+||++||+||+.+|++||||| |++++|
T Consensus 106 ~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDE---Pt~~LD 182 (289)
T PRK13645 106 ETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDE---PTGGLD 182 (289)
T ss_pred hHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeC---CcccCC
Confidence 13333332210 00011 12245567899999999999999999999999999 999999
Q ss_pred HHH-HHHHHHHHHcCC-CcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 193 ILM-GVLKEVIKQRAD-LKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 193 ~~~-~~l~~ll~~~~~-~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
+.. ..+.+++....+ .+.|||++||+++++.++||++++|+ .|+.
T Consensus 183 ~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~-~G~i 229 (289)
T PRK13645 183 PKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMH-EGKV 229 (289)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEE-CCEE
Confidence 887 778888776543 47899999999999999999999998 6654
No 174
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.96 E-value=1.7e-30 Score=212.72 Aligned_cols=175 Identities=14% Similarity=0.153 Sum_probs=135.9
Q ss_pred cCCChhHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhh-------hh
Q psy2071 59 ITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSE-------EM 131 (302)
Q Consensus 59 ~~lp~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~-------~~ 131 (302)
+.+....++++++..|++|.+++++||||+||||||.+++.+++.++|.+.+.|.+........+++.++- ..
T Consensus 9 K~y~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lSILkQ~N~i~~ 88 (252)
T COG4604 9 KSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLSILKQENHINS 88 (252)
T ss_pred HhhCCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHHHHHhhchhhh
Confidence 34444456889999999999999999999999999999999999999999999988655554444444332 23
Q ss_pred ccccccceeeeee---e------------------cCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcc
Q psy2071 132 DCQLGQEVGYSIR---F------------------EDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLA 190 (302)
Q Consensus 132 ~~~~~~~v~~~~~---~------------------~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~ 190 (302)
..++.+-|+|.-- - +.....++.+..|||||+||..+|..++.+.+.++||| |.++
T Consensus 89 rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVlaQdTdyvlLDE---PLNN 165 (252)
T COG4604 89 RLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDE---PLNN 165 (252)
T ss_pred eeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeeeccCcEEEecC---cccc
Confidence 4466666655420 0 00112345567799999999999999999999999999 9999
Q ss_pred hHHHH-HHHHHHHHHc-CCCcEEEEEEecCHHHHHhhccCCCeeeecCc
Q psy2071 191 TDILM-GVLKEVIKQR-ADLKLVIMSATLDAGKFQQYFDNAPLMNVPGR 237 (302)
Q Consensus 191 lD~~~-~~l~~ll~~~-~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~ 237 (302)
+|... ..+.+++++. .+.|+||+++-||++++..|+|.++-|+ .|+
T Consensus 166 LDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK-~G~ 213 (252)
T COG4604 166 LDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALK-NGK 213 (252)
T ss_pred cchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhhhhheeeec-CCE
Confidence 99655 4455555543 4669999999999999999999999998 554
No 175
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.96 E-value=7.9e-31 Score=233.06 Aligned_cols=170 Identities=14% Similarity=0.138 Sum_probs=127.4
Q ss_pred HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHH---HHHhhh----hhcccccc
Q psy2071 65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSV---AQRVSE----EMDCQLGQ 137 (302)
Q Consensus 65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~---~~~~~~----~~~~~~~~ 137 (302)
.+++++++.+.+|++++|+|+||||||||+++|+|+++|++|++.++|.+......... ..++.+ ....++.+
T Consensus 21 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~ 100 (265)
T PRK10253 21 TVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIGLLAQNATTPGDITVQE 100 (265)
T ss_pred EEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhheEEeeccCcCCCCCcHHH
Confidence 46889999999999999999999999999999999999999999998865422111100 111111 11223333
Q ss_pred ceeeee-e----------------------ecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHH
Q psy2071 138 EVGYSI-R----------------------FEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDIL 194 (302)
Q Consensus 138 ~v~~~~-~----------------------~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~ 194 (302)
++.+.. . +......++.+..||+||+||++||+|++.+|++||||| |++++|+.
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDE---Pt~gLD~~ 177 (265)
T PRK10253 101 LVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDE---PTTWLDIS 177 (265)
T ss_pred HHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHhcCCCEEEEeC---ccccCCHH
Confidence 332210 0 000011245567799999999999999999999999999 99999988
Q ss_pred H-HHHHHHHHHcCC-CcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 195 M-GVLKEVIKQRAD-LKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 195 ~-~~l~~ll~~~~~-~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
. ..+.+++....+ .+.|||++||+++++.++||++++|+ .|+.
T Consensus 178 ~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~-~G~i 222 (265)
T PRK10253 178 HQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALR-EGKI 222 (265)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEE-CCEE
Confidence 7 778888876644 47899999999999999999999998 6653
No 176
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=3.9e-31 Score=224.05 Aligned_cols=158 Identities=17% Similarity=0.182 Sum_probs=120.1
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcc--cccCCCEEEeecCchhh---hHHHHHHHhhhhhcccccccee
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEY--SKSVGAKAVACTQPRRV---AAMSVAQRVSEEMDCQLGQEVG 140 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~--~~~~G~~~i~~~~~~~~---~~~~~~~~~~~~~~~~~~~~v~ 140 (302)
+++++++.+++|++++|+|+||||||||+++|+|+. +|++|++.+++...... ....+.+........++.+++.
T Consensus 22 ~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~ 101 (192)
T cd03232 22 LLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRSTGYVEQQDVHSPNLTVREALR 101 (192)
T ss_pred eEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhhhceEEecccCccccCCcHHHHHH
Confidence 468899999999999999999999999999999986 48999999988654210 0000011111111223344433
Q ss_pred eeeeecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCH
Q psy2071 141 YSIRFEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVIKQRADLKLVIMSATLDA 219 (302)
Q Consensus 141 ~~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~ 219 (302)
+... ...||+||+||+++|+|++.+|++||||| |++++|+.. ..+.+++....+.+.|++++||+.
T Consensus 102 ~~~~----------~~~LSgGe~qrv~la~al~~~p~vlllDE---P~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~ 168 (192)
T cd03232 102 FSAL----------LRGLSVEQRKRLTIGVELAAKPSILFLDE---PTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQP 168 (192)
T ss_pred HHHH----------HhcCCHHHhHHHHHHHHHhcCCcEEEEeC---CCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCC
Confidence 2110 12899999999999999999999999999 999999887 778888877655588999999999
Q ss_pred H-HHHhhccCCCeeeec-Cc
Q psy2071 220 G-KFQQYFDNAPLMNVP-GR 237 (302)
Q Consensus 220 ~-~~~~~~d~~~~l~i~-g~ 237 (302)
+ .+..+||++++|+ . |+
T Consensus 169 ~~~~~~~~d~i~~l~-~~g~ 187 (192)
T cd03232 169 SASIFEKFDRLLLLK-RGGK 187 (192)
T ss_pred hHHHHhhCCEEEEEc-CCCe
Confidence 8 5789999999997 4 54
No 177
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.96 E-value=2.2e-30 Score=226.53 Aligned_cols=167 Identities=14% Similarity=0.117 Sum_probs=125.0
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHH---Hhhh---hhccccccce
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQ---RVSE---EMDCQLGQEV 139 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~---~~~~---~~~~~~~~~v 139 (302)
+.+++++.+++|++++|+|+||||||||+++|+|+++|++|++.+.|.+........... .+.+ .+..++.+++
T Consensus 17 ~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~nl 96 (237)
T cd03252 17 ILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGVVLQENVLFNRSIRDNI 96 (237)
T ss_pred ceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEEEcCCchhccchHHHHh
Confidence 468899999999999999999999999999999999999999999886542211111000 0111 1123444444
Q ss_pred eeeeeec------------C------------CCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH
Q psy2071 140 GYSIRFE------------D------------CSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM 195 (302)
Q Consensus 140 ~~~~~~~------------~------------~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~ 195 (302)
.+..... . ....+..+..||+||+||++||+|++.+|++||||| |++++|+..
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDE---P~~~LD~~~ 173 (237)
T cd03252 97 ALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDE---ATSALDYES 173 (237)
T ss_pred hccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCEEEEeC---CcccCCHHH
Confidence 3211000 0 000123457899999999999999999999999999 999999887
Q ss_pred -HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 196 -GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 196 -~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
..+.+++....+ +.||+++||+++.+. .||++++|+ .|+.
T Consensus 174 ~~~l~~~l~~~~~-~~tiii~sH~~~~~~-~~d~v~~l~-~G~i 214 (237)
T cd03252 174 EHAIMRNMHDICA-GRTVIIIAHRLSTVK-NADRIIVME-KGRI 214 (237)
T ss_pred HHHHHHHHHHhcC-CCEEEEEeCCHHHHH-hCCEEEEEE-CCEE
Confidence 778888887654 789999999999985 699999998 6664
No 178
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.96 E-value=4.6e-30 Score=222.94 Aligned_cols=166 Identities=17% Similarity=0.205 Sum_probs=122.8
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHH---Hhh---hhhccccccce
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQ---RVS---EEMDCQLGQEV 139 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~---~~~---~~~~~~~~~~v 139 (302)
+++++++.|++|++++|+||||||||||+++|+|+++|++|++.+.|............. ++. ..+..++.+++
T Consensus 29 ~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv~~nl 108 (226)
T cd03248 29 VLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFARSLQDNI 108 (226)
T ss_pred cccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHhhEEEEecccHHHhhhHHHHh
Confidence 588999999999999999999999999999999999999999999886532211000000 000 00111333333
Q ss_pred eeeee----------------------e--cCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH
Q psy2071 140 GYSIR----------------------F--EDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM 195 (302)
Q Consensus 140 ~~~~~----------------------~--~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~ 195 (302)
.+... + ......+..+..||+||+||++||++|+.+|++||||| |+.++|+..
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDE---Pt~~LD~~~ 185 (226)
T cd03248 109 AYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDE---ATSALDAES 185 (226)
T ss_pred ccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeC---CcccCCHHH
Confidence 22110 0 00112244567799999999999999999999999999 999999888
Q ss_pred -HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCc
Q psy2071 196 -GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGR 237 (302)
Q Consensus 196 -~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~ 237 (302)
..+.+++....+ +.|++++||+.+++. .||++++|+ .|+
T Consensus 186 ~~~l~~~l~~~~~-~~tii~~sh~~~~~~-~~d~i~~l~-~g~ 225 (226)
T cd03248 186 EQQVQQALYDWPE-RRTVLVIAHRLSTVE-RADQILVLD-GGR 225 (226)
T ss_pred HHHHHHHHHHHcC-CCEEEEEECCHHHHH-hCCEEEEec-CCc
Confidence 778888887655 589999999999996 599999997 553
No 179
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=1.8e-30 Score=232.74 Aligned_cols=168 Identities=15% Similarity=0.167 Sum_probs=128.2
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccC---CCEEEeecCchhhhHHHHH---HHhh-----hhhccc
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSV---GAKAVACTQPRRVAAMSVA---QRVS-----EEMDCQ 134 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~---G~~~i~~~~~~~~~~~~~~---~~~~-----~~~~~~ 134 (302)
+++++++.|++|++++|+|+||||||||+++|+|+++|+. |++.+.|............ ..+. .....+
T Consensus 22 ~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~~ig~v~q~~~~~~~~~t 101 (282)
T PRK13640 22 ALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGAT 101 (282)
T ss_pred ceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHhheEEEEECHHHhhccCC
Confidence 5789999999999999999999999999999999999987 8999988754321111111 1111 122345
Q ss_pred cccceeeeeeecC-------------------CCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH
Q psy2071 135 LGQEVGYSIRFED-------------------CSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM 195 (302)
Q Consensus 135 ~~~~v~~~~~~~~-------------------~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~ 195 (302)
+.+++.+...... ....++.+..||+||+||++||+||+.+|++||||| |++++|+..
T Consensus 102 v~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~~~P~llllDE---Pt~gLD~~~ 178 (282)
T PRK13640 102 VGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDE---STSMLDPAG 178 (282)
T ss_pred HHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEEC---CcccCCHHH
Confidence 5666554321110 011245567799999999999999999999999999 999999887
Q ss_pred -HHHHHHHHHcCC-CcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 196 -GVLKEVIKQRAD-LKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 196 -~~l~~ll~~~~~-~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
..+.+++....+ .|.|||++||+++.+. +||++++|+ .|+.
T Consensus 179 ~~~l~~~l~~l~~~~g~tvli~tH~~~~~~-~~d~i~~l~-~G~i 221 (282)
T PRK13640 179 KEQILKLIRKLKKKNNLTVISITHDIDEAN-MADQVLVLD-DGKL 221 (282)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEecCHHHHH-hCCEEEEEE-CCEE
Confidence 778888876644 4889999999999985 799999998 6664
No 180
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.96 E-value=6.9e-31 Score=231.90 Aligned_cols=169 Identities=17% Similarity=0.181 Sum_probs=124.8
Q ss_pred HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhccc-----ccCCCEEEeecCchhh--hH---HHHHHHhhhh---h
Q psy2071 65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYS-----KSVGAKAVACTQPRRV--AA---MSVAQRVSEE---M 131 (302)
Q Consensus 65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~-----~~~G~~~i~~~~~~~~--~~---~~~~~~~~~~---~ 131 (302)
.+++++++.|++|++++|+|+||||||||+++|+|+.. |++|++.++|.+.... .. ......+.+. +
T Consensus 20 ~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~ 99 (253)
T PRK14242 20 QALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVELRRRVGMVFQKPNPF 99 (253)
T ss_pred eeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHHHhhcEEEEecCCCCC
Confidence 35789999999999999999999999999999999864 5789999988653210 00 0000111111 1
Q ss_pred ccccccceeeeeee-------------------cCC-----CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCC
Q psy2071 132 DCQLGQEVGYSIRF-------------------EDC-----SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHER 187 (302)
Q Consensus 132 ~~~~~~~v~~~~~~-------------------~~~-----~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p 187 (302)
..++.+++.+.... ... ...++....||+||+||++||+||+.+|++||||| |
T Consensus 100 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~llllDE---P 176 (253)
T PRK14242 100 PKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARALAVEPEVLLMDE---P 176 (253)
T ss_pred cCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC---C
Confidence 12344444321100 000 01234467799999999999999999999999999 9
Q ss_pred CcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 188 TLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 188 ~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
++++|+.. ..+.+++....+ +.||+++||+++++.++||++++|+ .|+.
T Consensus 177 t~~LD~~~~~~l~~~l~~~~~-~~tvii~tH~~~~~~~~~d~v~~l~-~G~i 226 (253)
T PRK14242 177 ASALDPIATQKIEELIHELKA-RYTIIIVTHNMQQAARVSDVTAFFY-MGKL 226 (253)
T ss_pred cccCCHHHHHHHHHHHHHHhc-CCeEEEEEecHHHHHHhCCEEEEEE-CCEE
Confidence 99999887 778888887654 6899999999999999999999998 6653
No 181
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.96 E-value=9.9e-31 Score=232.09 Aligned_cols=170 Identities=12% Similarity=0.123 Sum_probs=127.5
Q ss_pred HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccC---CCEEEeecCchhh-----hHH-------HHHHHhhh
Q psy2071 65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSV---GAKAVACTQPRRV-----AAM-------SVAQRVSE 129 (302)
Q Consensus 65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~---G~~~i~~~~~~~~-----~~~-------~~~~~~~~ 129 (302)
.+.+++++.|.+|++++|+|+||||||||+++|+|+++|+. |++.+.|.+.... ... .+.+....
T Consensus 18 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~~~~q~~~~ 97 (262)
T PRK09984 18 QALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRANTGYIFQQFNL 97 (262)
T ss_pred EEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHHHHHhheEEEcccccc
Confidence 35789999999999999999999999999999999998864 8999988654221 000 01111111
Q ss_pred hhccccccceeeeee---------------------------ecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEc
Q psy2071 130 EMDCQLGQEVGYSIR---------------------------FEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLD 182 (302)
Q Consensus 130 ~~~~~~~~~v~~~~~---------------------------~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLD 182 (302)
....++.+++.+... +......++.+..||+||+||++||+||+.+|++||||
T Consensus 98 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD 177 (262)
T PRK09984 98 VNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILAD 177 (262)
T ss_pred ccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCHHHHHHHHHHHHHhcCCCEEEec
Confidence 222345555433210 00000123456679999999999999999999999999
Q ss_pred CCCCCCcchHHHH-HHHHHHHHHcCC-CcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 183 EAHERTLATDILM-GVLKEVIKQRAD-LKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 183 E~~~p~~~lD~~~-~~l~~ll~~~~~-~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
| |++++|+.. ..+.+++....+ .+.|||++|||.+.+..+||++++|+ .|+.
T Consensus 178 E---Pt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~-~g~i 231 (262)
T PRK09984 178 E---PIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALR-QGHV 231 (262)
T ss_pred C---ccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEE-CCEE
Confidence 9 999999887 778888887653 47899999999999999999999998 6653
No 182
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.96 E-value=2.1e-30 Score=227.59 Aligned_cols=153 Identities=15% Similarity=0.148 Sum_probs=112.4
Q ss_pred HHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhhccccccceee-----------
Q psy2071 73 LLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGY----------- 141 (302)
Q Consensus 73 ~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~----------- 141 (302)
.|++|++++|+||||||||||+++|+|+++|++|.+.+.+... +.. .+........++.+++.+
T Consensus 21 ~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~~i---~~~--~q~~~~~~~~tv~e~l~~~~~~~~~~~~~ 95 (246)
T cd03237 21 SISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTV---SYK--PQYIKADYEGTVRDLLSSITKDFYTHPYF 95 (246)
T ss_pred CcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCceE---EEe--cccccCCCCCCHHHHHHHHhhhccccHHH
Confidence 4568999999999999999999999999999999998876421 100 000000011111111110
Q ss_pred ---ee-eecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcC-CCcEEEEEE
Q psy2071 142 ---SI-RFEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVIKQRA-DLKLVIMSA 215 (302)
Q Consensus 142 ---~~-~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~-~~~~~ii~~ 215 (302)
.+ .+......++.+..|||||+||++||+||+.+|+++|||| |++++|+.. ..+.+++.... +.+.+||++
T Consensus 96 ~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDE---Pt~~LD~~~~~~l~~~l~~~~~~~~~tiiiv 172 (246)
T cd03237 96 KTEIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDE---PSAYLDVEQRLMASKVIRRFAENNEKTAFVV 172 (246)
T ss_pred HHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC---CcccCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 00 0111112345678899999999999999999999999999 999999887 67777777654 347899999
Q ss_pred ecCHHHHHhhccCCCeee
Q psy2071 216 TLDAGKFQQYFDNAPLMN 233 (302)
Q Consensus 216 thd~~~~~~~~d~~~~l~ 233 (302)
|||++.+..+||++++|+
T Consensus 173 sHd~~~~~~~~d~i~~l~ 190 (246)
T cd03237 173 EHDIIMIDYLADRLIVFE 190 (246)
T ss_pred eCCHHHHHHhCCEEEEEc
Confidence 999999999999999986
No 183
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.96 E-value=2e-30 Score=224.26 Aligned_cols=166 Identities=18% Similarity=0.238 Sum_probs=122.8
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHH---HHHhhhh---hccccccce
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSV---AQRVSEE---MDCQLGQEV 139 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~---~~~~~~~---~~~~~~~~v 139 (302)
+.+++++.|++|++++|+||||||||||+++|+|+.+|+.|++.+.|........... ..++.+. +..++.+++
T Consensus 19 ~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l 98 (220)
T cd03245 19 ALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLRDNI 98 (220)
T ss_pred cccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEEEeCCCCccccchHHHHh
Confidence 5789999999999999999999999999999999999999999998865322111000 0111111 112344443
Q ss_pred eeeeeec------------CC-CCcc-----------ccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH
Q psy2071 140 GYSIRFE------------DC-SSPK-----------TVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM 195 (302)
Q Consensus 140 ~~~~~~~------------~~-~~~~-----------~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~ 195 (302)
.+..... .. ...+ .....||+||+||++||+|++.+|++||||| |++++|+..
T Consensus 99 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~llllDE---Pt~~LD~~~ 175 (220)
T cd03245 99 TLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDE---PTSAMDMNS 175 (220)
T ss_pred hcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeC---ccccCCHHH
Confidence 3211100 00 0001 1235899999999999999999999999999 999999887
Q ss_pred -HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCc
Q psy2071 196 -GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGR 237 (302)
Q Consensus 196 -~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~ 237 (302)
..+.+++....+. .|||++||+.+.+ ++||++++|+ .|+
T Consensus 176 ~~~l~~~l~~~~~~-~tii~~sH~~~~~-~~~d~v~~l~-~g~ 215 (220)
T cd03245 176 EERLKERLRQLLGD-KTLIIITHRPSLL-DLVDRIIVMD-SGR 215 (220)
T ss_pred HHHHHHHHHHhcCC-CEEEEEeCCHHHH-HhCCEEEEEe-CCe
Confidence 7888888876554 7999999999987 7999999998 665
No 184
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.96 E-value=3.5e-30 Score=223.24 Aligned_cols=161 Identities=19% Similarity=0.208 Sum_probs=118.8
Q ss_pred HHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchh----hhHHHHHHHhhhhhccccccceeeee-----
Q psy2071 73 LLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRR----VAAMSVAQRVSEEMDCQLGQEVGYSI----- 143 (302)
Q Consensus 73 ~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~----~~~~~~~~~~~~~~~~~~~~~v~~~~----- 143 (302)
.|++|++++|+|+||||||||+++|+|+++|++|++.++|.+... ++.......+...+..++.+++.+..
T Consensus 2 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~ 81 (223)
T TIGR03771 2 SADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRTGHIG 81 (223)
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhccccccc
Confidence 578999999999999999999999999999999999999875421 11111111110011123333322110
Q ss_pred -----------------e-ecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHHH
Q psy2071 144 -----------------R-FEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVIKQ 204 (302)
Q Consensus 144 -----------------~-~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~ 204 (302)
. +......++.+..||+||+||++||++|+.+|++||||| |++++|+.. ..+.+++.+
T Consensus 82 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDE---P~~~LD~~~~~~l~~~l~~ 158 (223)
T TIGR03771 82 WLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDE---PFTGLDMPTQELLTELFIE 158 (223)
T ss_pred cccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC---CcccCCHHHHHHHHHHHHH
Confidence 0 000011244567799999999999999999999999999 999999887 778888887
Q ss_pred cCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 205 RADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 205 ~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
..+.+.|++++||+++++..+||+++++ .|+.
T Consensus 159 ~~~~~~tvii~sH~~~~~~~~~d~i~~l--~G~i 190 (223)
T TIGR03771 159 LAGAGTAILMTTHDLAQAMATCDRVVLL--NGRV 190 (223)
T ss_pred HHHcCCEEEEEeCCHHHHHHhCCEEEEE--CCEE
Confidence 6556889999999999999999999877 4653
No 185
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=7.3e-31 Score=231.77 Aligned_cols=169 Identities=15% Similarity=0.150 Sum_probs=125.3
Q ss_pred HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccc-----cCCCEEEeecCch--hhhHHHHH---HHhhh----h
Q psy2071 65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSK-----SVGAKAVACTQPR--RVAAMSVA---QRVSE----E 130 (302)
Q Consensus 65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~-----~~G~~~i~~~~~~--~~~~~~~~---~~~~~----~ 130 (302)
.+++++++.|++|++++|+|+||||||||+++|+|+++| ++|++.++|.+.. ........ ..+.+ .
T Consensus 18 ~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~ 97 (253)
T PRK14267 18 HVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPNPF 97 (253)
T ss_pred eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHHHhhceeEEecCCccC
Confidence 357899999999999999999999999999999999987 4899999886432 11000000 11111 1
Q ss_pred hccccccceeeeee--------------------ecCC-----CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCC
Q psy2071 131 MDCQLGQEVGYSIR--------------------FEDC-----SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAH 185 (302)
Q Consensus 131 ~~~~~~~~v~~~~~--------------------~~~~-----~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~ 185 (302)
...++.+++.+... .... ...++....||+||+||++||+||+.+|++|||||
T Consensus 98 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE-- 175 (253)
T PRK14267 98 PHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDE-- 175 (253)
T ss_pred CCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEcC--
Confidence 12233443332110 0000 01234567799999999999999999999999999
Q ss_pred CCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 186 ERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 186 ~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
|++++|+.. ..+.+++....+ +.|+|++||+++.+..+||++++|+ .|+.
T Consensus 176 -P~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~-~G~i 226 (253)
T PRK14267 176 -PTANIDPVGTAKIEELLFELKK-EYTIVLVTHSPAQAARVSDYVAFLY-LGKL 226 (253)
T ss_pred -CCccCCHHHHHHHHHHHHHHhh-CCEEEEEECCHHHHHhhCCEEEEEE-CCEE
Confidence 999999877 778888877654 5899999999999999999999998 6664
No 186
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.96 E-value=1.3e-30 Score=226.04 Aligned_cols=165 Identities=16% Similarity=0.160 Sum_probs=121.2
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeec----CchhhhH-----------HHHHHHhhhh
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACT----QPRRVAA-----------MSVAQRVSEE 130 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~----~~~~~~~-----------~~~~~~~~~~ 130 (302)
+++++++.|++|++++|+|+||||||||+++|+|+++|++|.+.+.+. +...... ..+.+.....
T Consensus 23 il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 102 (224)
T TIGR02324 23 VLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQFLRVI 102 (224)
T ss_pred EEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCHHHHHHHHhcceEEEecccccC
Confidence 578899999999999999999999999999999999999999999732 2211100 0001111111
Q ss_pred hccccccceeeee------------------eecCCC--CccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcc
Q psy2071 131 MDCQLGQEVGYSI------------------RFEDCS--SPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLA 190 (302)
Q Consensus 131 ~~~~~~~~v~~~~------------------~~~~~~--~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~ 190 (302)
...++.+++.+.. ...... ..+..+..||+||+||++||+||+.+|++||||| |+++
T Consensus 103 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDE---Pt~~ 179 (224)
T TIGR02324 103 PRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDE---PTAS 179 (224)
T ss_pred CCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcC---Cccc
Confidence 1122222222110 000111 1234567899999999999999999999999999 9999
Q ss_pred hHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeee
Q psy2071 191 TDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMN 233 (302)
Q Consensus 191 lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~ 233 (302)
+|+.. ..+.++++...+.+.|++++||+.+.+..+||+++.+.
T Consensus 180 LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~~~d~i~~~~ 223 (224)
T TIGR02324 180 LDAANRQVVVELIAEAKARGAALIGIFHDEEVRELVADRVMDVT 223 (224)
T ss_pred CCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceeEecC
Confidence 99887 77888888766568899999999999999999987764
No 187
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.96 E-value=1e-30 Score=251.46 Aligned_cols=169 Identities=14% Similarity=0.128 Sum_probs=129.3
Q ss_pred HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHH--------HHHHHhhhhhccccc
Q psy2071 65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAM--------SVAQRVSEEMDCQLG 136 (302)
Q Consensus 65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~--------~~~~~~~~~~~~~~~ 136 (302)
.+++++++.+++|++++|+|+||||||||+++|+|+++|++|++.+.|......... .+.+........++.
T Consensus 12 ~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 91 (491)
T PRK10982 12 KALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQRSVM 91 (491)
T ss_pred EeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEecccccccCCCHH
Confidence 357899999999999999999999999999999999999999999988653211100 011111111234555
Q ss_pred cceeeeee-e---------------------cCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHH
Q psy2071 137 QEVGYSIR-F---------------------EDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDIL 194 (302)
Q Consensus 137 ~~v~~~~~-~---------------------~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~ 194 (302)
+++.+... . ......++.+..|||||+||++||+||+.+|++||||| ||+++|+.
T Consensus 92 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p~lllLDE---Pt~~LD~~ 168 (491)
T PRK10982 92 DNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDE---PTSSLTEK 168 (491)
T ss_pred HHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCCCEEEEeC---CCCCCCHH
Confidence 55543210 0 00012245567799999999999999999999999999 99999988
Q ss_pred H-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCc
Q psy2071 195 M-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGR 237 (302)
Q Consensus 195 ~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~ 237 (302)
. ..+.+++....+.+.|+|++|||++++..+||++++|+ .|+
T Consensus 169 ~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~-~G~ 211 (491)
T PRK10982 169 EVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILR-DGQ 211 (491)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEE-CCE
Confidence 7 77888887766668899999999999999999999998 554
No 188
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.96 E-value=1.9e-30 Score=250.79 Aligned_cols=168 Identities=11% Similarity=0.066 Sum_probs=128.7
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHH----HHHhhh----hhcccccc
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSV----AQRVSE----EMDCQLGQ 137 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~----~~~~~~----~~~~~~~~ 137 (302)
+.+++++.|++|++++|+||||||||||+++|+|+++|++|++.+.|........... ..++.+ ....++.+
T Consensus 20 il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e 99 (510)
T PRK09700 20 ALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGIGIIYQELSVIDELTVLE 99 (510)
T ss_pred EeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCeEEEeecccccCCCcHHH
Confidence 5789999999999999999999999999999999999999999998865422110000 011111 12234444
Q ss_pred ceeeeee--------------------------ecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcch
Q psy2071 138 EVGYSIR--------------------------FEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLAT 191 (302)
Q Consensus 138 ~v~~~~~--------------------------~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~l 191 (302)
++.+... +......++.+..|||||+||++||+||+.+|++||||| ||+++
T Consensus 100 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDE---Pt~~L 176 (510)
T PRK09700 100 NLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDE---PTSSL 176 (510)
T ss_pred HhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeC---CCCCC
Confidence 4433210 000012245567799999999999999999999999999 99999
Q ss_pred HHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCc
Q psy2071 192 DILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGR 237 (302)
Q Consensus 192 D~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~ 237 (302)
|+.. ..+.+++.+..+.+.|||++|||++.+..+||++++|+ .|+
T Consensus 177 D~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~-~G~ 222 (510)
T PRK09700 177 TNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMK-DGS 222 (510)
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEE-CCE
Confidence 9887 77888888766568899999999999999999999998 554
No 189
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.96 E-value=1.6e-29 Score=202.63 Aligned_cols=170 Identities=15% Similarity=0.134 Sum_probs=129.8
Q ss_pred hHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHH-----------HHHhhhhhc
Q psy2071 64 FEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSV-----------AQRVSEEMD 132 (302)
Q Consensus 64 ~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~-----------~~~~~~~~~ 132 (302)
..+++++++.|++||.++|+||+|||||||+-.++|+..|++|++.+.|++......-.. +|.+...++
T Consensus 23 l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~Lip~ 102 (228)
T COG4181 23 LSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPN 102 (228)
T ss_pred eeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHhhccceeEEEEeeecccc
Confidence 345789999999999999999999999999999999999999999999987544322111 111122334
Q ss_pred cccccceeeeeeecCCCCc-------------------cccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHH
Q psy2071 133 CQLGQEVGYSIRFEDCSSP-------------------KTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDI 193 (302)
Q Consensus 133 ~~~~~~v~~~~~~~~~~~~-------------------~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~ 193 (302)
++..+||..+..+...... .-....||||++|||+||||++..|++||.|| ||-++|.
T Consensus 103 ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P~vLfADE---PTGNLD~ 179 (228)
T COG4181 103 LTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADE---PTGNLDR 179 (228)
T ss_pred chhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCCCCEEeccC---CCCCcch
Confidence 5666677666544332111 11245599999999999999999999999999 9999997
Q ss_pred HH-HHHHHHHH-HcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 194 LM-GVLKEVIK-QRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 194 ~~-~~l~~ll~-~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
.. ..+.+++- ...+.|.|++++|||...+. -|+|++-|. .|+.
T Consensus 180 ~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~-Rc~R~~r~~-~G~l 224 (228)
T COG4181 180 ATGDKIADLLFALNRERGTTLVLVTHDPQLAA-RCDRQLRLR-SGRL 224 (228)
T ss_pred hHHHHHHHHHHHHhhhcCceEEEEeCCHHHHH-hhhheeeee-ccee
Confidence 77 66666654 44577999999999988765 589998887 6653
No 190
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.96 E-value=7.6e-31 Score=224.39 Aligned_cols=164 Identities=13% Similarity=0.094 Sum_probs=121.0
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhH--HH----HHHHhhhhhccccccce
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAA--MS----VAQRVSEEMDCQLGQEV 139 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~--~~----~~~~~~~~~~~~~~~~v 139 (302)
+++++++.|++|++++|+|+||||||||+++|+|+++|++|++.+.|........ .. +.+........++.+++
T Consensus 16 ~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~l 95 (204)
T PRK13538 16 LFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLYLGHQPGIKTELTALENL 95 (204)
T ss_pred EEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhhhheEEeCCccccCcCCcHHHHH
Confidence 5789999999999999999999999999999999999999999998865422110 00 00110111122344443
Q ss_pred eeeeee----------------cCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHH
Q psy2071 140 GYSIRF----------------EDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVI 202 (302)
Q Consensus 140 ~~~~~~----------------~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll 202 (302)
.+.... ......++.+..||+||+||++||+|++.+|+++|||| |+.++|+.. ..+.+++
T Consensus 96 ~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDE---Pt~~LD~~~~~~l~~~l 172 (204)
T PRK13538 96 RFYQRLHGPGDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDE---PFTAIDKQGVARLEALL 172 (204)
T ss_pred HHHHHhcCccHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeC---CCccCCHHHHHHHHHHH
Confidence 322111 00012245667899999999999999999999999999 999999887 7788888
Q ss_pred HHcCCCcEEEEEEecCHHHHHhhccCCCee
Q psy2071 203 KQRADLKLVIMSATLDAGKFQQYFDNAPLM 232 (302)
Q Consensus 203 ~~~~~~~~~ii~~thd~~~~~~~~d~~~~l 232 (302)
....+.+.|++++||+.+++..+.++++++
T Consensus 173 ~~~~~~~~tiii~sh~~~~i~~~~~~~~~~ 202 (204)
T PRK13538 173 AQHAEQGGMVILTTHQDLPVASDKVRKLRL 202 (204)
T ss_pred HHHHHCCCEEEEEecChhhhccCCceEEec
Confidence 876555789999999999998866665443
No 191
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.96 E-value=3e-30 Score=249.33 Aligned_cols=169 Identities=17% Similarity=0.138 Sum_probs=128.9
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhH-HHH---HHHhhh-------hhccc
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAA-MSV---AQRVSE-------EMDCQ 134 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~-~~~---~~~~~~-------~~~~~ 134 (302)
+++++++.|++|++++|+||||||||||+++|+|+++|++|++.+.|........ ... ..++.+ ....+
T Consensus 278 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~t 357 (510)
T PRK09700 278 KVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPNFS 357 (510)
T ss_pred cccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCCcEEccCccccCCCcCCCc
Confidence 5899999999999999999999999999999999999999999998864321100 000 011111 11234
Q ss_pred cccceeeeee----------------------------ecCC-CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCC
Q psy2071 135 LGQEVGYSIR----------------------------FEDC-SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAH 185 (302)
Q Consensus 135 ~~~~v~~~~~----------------------------~~~~-~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~ 185 (302)
+.+++.+... +... ...++.+..|||||+||++||++|+.+|++|||||
T Consensus 358 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDE-- 435 (510)
T PRK09700 358 IAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKVLISKWLCCCPEVIIFDE-- 435 (510)
T ss_pred HHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHHHHHHHHHhcCCCEEEECC--
Confidence 4444332110 0010 12355677899999999999999999999999999
Q ss_pred CCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 186 ERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 186 ~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
||+++|+.. ..+.++++...+.|.|||++|||++++..+||++++|+ .|+.
T Consensus 436 -Pt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~d~i~~l~-~G~i 487 (510)
T PRK09700 436 -PTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFC-EGRL 487 (510)
T ss_pred -CCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEE-CCEE
Confidence 999999887 78888888765568899999999999999999999998 6653
No 192
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=8.7e-31 Score=231.42 Aligned_cols=169 Identities=17% Similarity=0.150 Sum_probs=125.6
Q ss_pred HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccc-----cCCCEEEeecCchhh-----hHHHHHHHhhh---hh
Q psy2071 65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSK-----SVGAKAVACTQPRRV-----AAMSVAQRVSE---EM 131 (302)
Q Consensus 65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~-----~~G~~~i~~~~~~~~-----~~~~~~~~~~~---~~ 131 (302)
.+.+++++.|++|++++|+|+||||||||+++|+|+++| ++|++.+.|...... ........+.+ .+
T Consensus 21 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~ 100 (254)
T PRK14273 21 KALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPNPF 100 (254)
T ss_pred eeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHHHhhceEEEeeccccc
Confidence 357899999999999999999999999999999999987 489999988643210 00000011111 11
Q ss_pred ccccccceeeeeeec-------------------CC-----CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCC
Q psy2071 132 DCQLGQEVGYSIRFE-------------------DC-----SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHER 187 (302)
Q Consensus 132 ~~~~~~~v~~~~~~~-------------------~~-----~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p 187 (302)
..++.+++.+..... .. ...++....||+||+||++||++|+.+|++||||| |
T Consensus 101 ~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDE---P 177 (254)
T PRK14273 101 LMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDE---P 177 (254)
T ss_pred cCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC---C
Confidence 234444443221100 00 01244567799999999999999999999999999 9
Q ss_pred CcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 188 TLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 188 ~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
++++|+.. ..+.+++....+ +.|++++||+++++..+||++++|+ .|+.
T Consensus 178 t~~LD~~~~~~l~~~l~~~~~-~~tvii~sH~~~~~~~~~d~i~~l~-~G~i 227 (254)
T PRK14273 178 TSALDPISTGKIEELIINLKE-SYTIIIVTHNMQQAGRISDRTAFFL-NGCI 227 (254)
T ss_pred CcccCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEE-CCEE
Confidence 99999887 778888887654 6899999999999999999999998 6653
No 193
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=5.7e-30 Score=222.75 Aligned_cols=167 Identities=15% Similarity=0.172 Sum_probs=123.8
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHH---Hhhh---hhccccccce
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQ---RVSE---EMDCQLGQEV 139 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~---~~~~---~~~~~~~~~v 139 (302)
+.+++++.+++|++++|+||||||||||+++|+|+++|++|++.+.|............. ++.+ .+..++.+++
T Consensus 18 ~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~~ 97 (229)
T cd03254 18 VLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIGVVLQDTFLFSGTIMENI 97 (229)
T ss_pred cccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEEEecCCchhhhhHHHHHH
Confidence 578999999999999999999999999999999999999999999886543211111011 1111 1112333333
Q ss_pred eeeeeecC------------------------CCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH
Q psy2071 140 GYSIRFED------------------------CSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM 195 (302)
Q Consensus 140 ~~~~~~~~------------------------~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~ 195 (302)
.+...... .......+..||+||+||++||++|+.+|++||||| |++++|+..
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~llllDE---P~~~LD~~~ 174 (229)
T cd03254 98 RLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDE---ATSNIDTET 174 (229)
T ss_pred hccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeC---ccccCCHHH
Confidence 32210000 000122357899999999999999999999999999 999999887
Q ss_pred -HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 196 -GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 196 -~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
..+.+++....+ +.|||++||+.+.+. .||++++|+ .|+.
T Consensus 175 ~~~l~~~l~~~~~-~~tii~~sh~~~~~~-~~d~i~~l~-~g~~ 215 (229)
T cd03254 175 EKLIQEALEKLMK-GRTSIIIAHRLSTIK-NADKILVLD-DGKI 215 (229)
T ss_pred HHHHHHHHHHhcC-CCEEEEEecCHHHHh-hCCEEEEEe-CCeE
Confidence 778888887654 789999999999986 599999998 6653
No 194
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=1.7e-30 Score=231.58 Aligned_cols=168 Identities=13% Similarity=0.150 Sum_probs=126.9
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHH---HHhh-----hhhcccccc
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVA---QRVS-----EEMDCQLGQ 137 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~---~~~~-----~~~~~~~~~ 137 (302)
+.+++++.|++|++++|+||||||||||+++|+|+++|++|++.++|............ ..+. .....++.+
T Consensus 24 il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e 103 (271)
T PRK13632 24 ALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVED 103 (271)
T ss_pred ceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcceEEEEeCHHHhcCcccHHH
Confidence 57889999999999999999999999999999999999999999988654221110000 1111 122345555
Q ss_pred ceeeeeee-------------------cCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HH
Q psy2071 138 EVGYSIRF-------------------EDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GV 197 (302)
Q Consensus 138 ~v~~~~~~-------------------~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~ 197 (302)
++.+.... ......++.+..||+||+||++||+||+.+|++||||| |++++|+.. ..
T Consensus 104 nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDE---P~~gLD~~~~~~ 180 (271)
T PRK13632 104 DIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDE---STSMLDPKGKRE 180 (271)
T ss_pred HHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC---CcccCCHHHHHH
Confidence 55432110 00011245567799999999999999999999999999 999999887 77
Q ss_pred HHHHHHHcCCC-cEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 198 LKEVIKQRADL-KLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 198 l~~ll~~~~~~-~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
+.+++.+..+. +.|+|++||+.+.+. +||++++|+ .|+.
T Consensus 181 l~~~l~~~~~~~~~tiii~sH~~~~~~-~~d~v~~l~-~G~i 220 (271)
T PRK13632 181 IKKIMVDLRKTRKKTLISITHDMDEAI-LADKVIVFS-EGKL 220 (271)
T ss_pred HHHHHHHHHHhcCcEEEEEEechhHHh-hCCEEEEEE-CCEE
Confidence 88888776544 489999999999985 799999998 6653
No 195
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=6.9e-31 Score=232.57 Aligned_cols=168 Identities=17% Similarity=0.154 Sum_probs=125.1
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccc-----cCCCEEEeecCchhh-----hHHHHHHHhhhh---hc
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSK-----SVGAKAVACTQPRRV-----AAMSVAQRVSEE---MD 132 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~-----~~G~~~i~~~~~~~~-----~~~~~~~~~~~~---~~ 132 (302)
+++++++.|++|++++|+|+||||||||+++|+|+++| ++|++.+.|...... .......++.+. +.
T Consensus 27 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~ 106 (258)
T PRK14268 27 ALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNPFP 106 (258)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHHHhhhEEEEecCCccCc
Confidence 57899999999999999999999999999999999875 799999987643210 000001111111 11
Q ss_pred cccccceeeeee------------------ecCC-----CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCc
Q psy2071 133 CQLGQEVGYSIR------------------FEDC-----SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTL 189 (302)
Q Consensus 133 ~~~~~~v~~~~~------------------~~~~-----~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~ 189 (302)
.++.+++.+... .... ...++.+..||+||+||++||+||+.+|++||||| |++
T Consensus 107 ~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDE---Pt~ 183 (258)
T PRK14268 107 MSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDE---PTS 183 (258)
T ss_pred ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeC---CCc
Confidence 233333322110 0000 11245567899999999999999999999999999 999
Q ss_pred chHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 190 ATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 190 ~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
++|+.. ..+.+++++..+ +.|||++|||.+++.++||++++|+ .|+.
T Consensus 184 ~LD~~~~~~l~~~l~~l~~-~~tiiivsH~~~~~~~~~d~i~~l~-~G~i 231 (258)
T PRK14268 184 ALDPISTARIEDLIMNLKK-DYTIVIVTHNMQQAARISDYTGFFL-MGEL 231 (258)
T ss_pred ccCHHHHHHHHHHHHHHhh-CCEEEEEECCHHHHHHhCCEEEEEE-CCEE
Confidence 999887 778888887654 6899999999999999999999998 6653
No 196
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.96 E-value=5.2e-31 Score=232.20 Aligned_cols=163 Identities=16% Similarity=0.166 Sum_probs=119.3
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhhccccccce------
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEV------ 139 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v------ 139 (302)
+++++++.|++|++++|+|+||||||||+++|+|+++|++|++.+.+.. .++...........+..++.+++
T Consensus 19 vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~~--~i~~v~q~~~~~~~l~~~~~~~~~~~~~~ 96 (251)
T PRK09544 19 VLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKL--RIGYVPQKLYLDTTLPLTVNRFLRLRPGT 96 (251)
T ss_pred EEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCcc--CEEEeccccccccccChhHHHHHhccccc
Confidence 5788999999999999999999999999999999999999998876521 11111110000000000111111
Q ss_pred -----eeee-eecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcCC-CcEE
Q psy2071 140 -----GYSI-RFEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVIKQRAD-LKLV 211 (302)
Q Consensus 140 -----~~~~-~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~-~~~~ 211 (302)
...+ .+......++.+..||+||+||++||+||+.+|++||||| |++++|+.. ..+.+++....+ .+.|
T Consensus 97 ~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDE---Pt~~LD~~~~~~l~~~L~~~~~~~g~t 173 (251)
T PRK09544 97 KKEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDE---PTQGVDVNGQVALYDLIDQLRRELDCA 173 (251)
T ss_pred cHHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC---CCcCCCHHHHHHHHHHHHHHHHhcCCE
Confidence 0001 0111112345678899999999999999999999999999 999999887 777788776544 3789
Q ss_pred EEEEecCHHHHHhhccCCCeee
Q psy2071 212 IMSATLDAGKFQQYFDNAPLMN 233 (302)
Q Consensus 212 ii~~thd~~~~~~~~d~~~~l~ 233 (302)
||++||+.+++..+||++++|+
T Consensus 174 iiivsH~~~~i~~~~d~i~~l~ 195 (251)
T PRK09544 174 VLMVSHDLHLVMAKTDEVLCLN 195 (251)
T ss_pred EEEEecCHHHHHHhCCEEEEEC
Confidence 9999999999999999999986
No 197
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.96 E-value=1.8e-30 Score=225.38 Aligned_cols=165 Identities=15% Similarity=0.112 Sum_probs=122.7
Q ss_pred HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHH---Hhhh---hhccccccc
Q psy2071 65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQ---RVSE---EMDCQLGQE 138 (302)
Q Consensus 65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~---~~~~---~~~~~~~~~ 138 (302)
.+.+++++.|++|++++|+||||||||||+++|+|+++|++|++.+.|.+........... .+.+ .+..++.++
T Consensus 21 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv~en 100 (225)
T PRK10247 21 KILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVSYCAQTPTLFGDTVYDN 100 (225)
T ss_pred eeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccEEEecccccccccHHHH
Confidence 3578999999999999999999999999999999999999999999886532211100000 1111 111233344
Q ss_pred eeeeee----------------ecCC--CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHH
Q psy2071 139 VGYSIR----------------FEDC--SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLK 199 (302)
Q Consensus 139 v~~~~~----------------~~~~--~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~ 199 (302)
+.+... .... ...++.+..||+||+||++||++|+.+|+++|||| |+.++|+.. ..+.
T Consensus 101 l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE---Pt~~LD~~~~~~l~ 177 (225)
T PRK10247 101 LIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDE---ITSALDESNKHNVN 177 (225)
T ss_pred HHhHHhhcCCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC---CcccCCHHHHHHHH
Confidence 332110 0011 01245667799999999999999999999999999 999999887 7788
Q ss_pred HHHHHcC-CCcEEEEEEecCHHHHHhhccCCCeee
Q psy2071 200 EVIKQRA-DLKLVIMSATLDAGKFQQYFDNAPLMN 233 (302)
Q Consensus 200 ~ll~~~~-~~~~~ii~~thd~~~~~~~~d~~~~l~ 233 (302)
+++.... +.+.+|+++||+.+++. +||++++|+
T Consensus 178 ~~l~~~~~~~~~tvii~sh~~~~~~-~~d~i~~l~ 211 (225)
T PRK10247 178 EIIHRYVREQNIAVLWVTHDKDEIN-HADKVITLQ 211 (225)
T ss_pred HHHHHHHHhcCCEEEEEECChHHHH-hCCEEEEEe
Confidence 8887654 34789999999999985 699999996
No 198
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=1.7e-30 Score=232.71 Aligned_cols=168 Identities=16% Similarity=0.142 Sum_probs=127.2
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhh----HHHHHHHhhh-----hhccccc
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVA----AMSVAQRVSE-----EMDCQLG 136 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~----~~~~~~~~~~-----~~~~~~~ 136 (302)
+++++++.|++|++++|+|+||||||||+++|+|+++|++|.+.+.|....... .......+.+ ....++.
T Consensus 25 vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~ 104 (280)
T PRK13633 25 ALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVATIVE 104 (280)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHHhhheEEEecChhhhhccccHH
Confidence 688999999999999999999999999999999999999999999886543211 0000111111 1122344
Q ss_pred cceeeeeee-------------------cCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-H
Q psy2071 137 QEVGYSIRF-------------------EDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-G 196 (302)
Q Consensus 137 ~~v~~~~~~-------------------~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~ 196 (302)
+++.+.... ......++.+..||+||+||++||++|+.+|++||||| |++++|+.. .
T Consensus 105 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE---Pt~gLD~~~~~ 181 (280)
T PRK13633 105 EDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDE---PTAMLDPSGRR 181 (280)
T ss_pred HHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC---CcccCCHHHHH
Confidence 444332110 00012245667799999999999999999999999999 999999888 7
Q ss_pred HHHHHHHHcCC-CcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 197 VLKEVIKQRAD-LKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 197 ~l~~ll~~~~~-~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
.+.+++....+ .+.||+++||+++.+.. ||++++|+ .|+.
T Consensus 182 ~l~~~l~~l~~~~g~tillvtH~~~~~~~-~d~v~~l~-~G~i 222 (280)
T PRK13633 182 EVVNTIKELNKKYGITIILITHYMEEAVE-ADRIIVMD-SGKV 222 (280)
T ss_pred HHHHHHHHHHHhcCCEEEEEecChHHHhc-CCEEEEEE-CCEE
Confidence 78888887643 48999999999999976 99999998 6653
No 199
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=1.5e-30 Score=251.18 Aligned_cols=169 Identities=14% Similarity=0.144 Sum_probs=129.1
Q ss_pred HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccc--cCCCEEEeecCchhhhHH--------HHHHHhhhhhccc
Q psy2071 65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSK--SVGAKAVACTQPRRVAAM--------SVAQRVSEEMDCQ 134 (302)
Q Consensus 65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~--~~G~~~i~~~~~~~~~~~--------~~~~~~~~~~~~~ 134 (302)
.+++++++.|++|++++|+||||||||||+++|+|+++| ++|.+.+.|......... .+.+........+
T Consensus 19 ~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 98 (506)
T PRK13549 19 KALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAGIAIIHQELALVKELS 98 (506)
T ss_pred EeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHCCeEEEEeccccCCCCc
Confidence 368999999999999999999999999999999999986 799999988654221100 1111111112345
Q ss_pred cccceeeeeee----------------------cCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchH
Q psy2071 135 LGQEVGYSIRF----------------------EDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATD 192 (302)
Q Consensus 135 ~~~~v~~~~~~----------------------~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD 192 (302)
+.+++.+.... ......++.+..|||||+||++||+||+.+|++||||| ||+++|
T Consensus 99 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDE---Pt~~LD 175 (506)
T PRK13549 99 VLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQARLLILDE---PTASLT 175 (506)
T ss_pred HHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeC---CCCCCC
Confidence 55555433211 00012245667899999999999999999999999999 999999
Q ss_pred HHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCc
Q psy2071 193 ILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGR 237 (302)
Q Consensus 193 ~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~ 237 (302)
+.. ..+.+++....+.+.+||++|||++.+..+||++++|+ .|+
T Consensus 176 ~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~-~G~ 220 (506)
T PRK13549 176 ESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIR-DGR 220 (506)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEE-CCE
Confidence 887 77888887765568899999999999999999999998 554
No 200
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.96 E-value=9.9e-31 Score=257.67 Aligned_cols=170 Identities=16% Similarity=0.136 Sum_probs=128.5
Q ss_pred HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhH------HHHHHHhhh------hhc
Q psy2071 65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAA------MSVAQRVSE------EMD 132 (302)
Q Consensus 65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~------~~~~~~~~~------~~~ 132 (302)
.+++++++.|++|++++|+|+||||||||+++|+|+++|++|.+.+.|........ .....++.+ ...
T Consensus 338 ~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~ 417 (623)
T PRK10261 338 HAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPR 417 (623)
T ss_pred EEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcCCC
Confidence 36789999999999999999999999999999999999999999998864321110 000111111 112
Q ss_pred cccccceeeeee-------------------ecCCC--CccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcch
Q psy2071 133 CQLGQEVGYSIR-------------------FEDCS--SPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLAT 191 (302)
Q Consensus 133 ~~~~~~v~~~~~-------------------~~~~~--~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~l 191 (302)
.++.+++.+... ..... ..++.+..|||||+||++||+||+.+|++||||| ||+++
T Consensus 418 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~llllDE---Pts~L 494 (623)
T PRK10261 418 QTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIARALALNPKVIIADE---AVSAL 494 (623)
T ss_pred CCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC---CcccC
Confidence 234443322110 00111 1345667899999999999999999999999999 99999
Q ss_pred HHHH-HHHHHHHHHcCC-CcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 192 DILM-GVLKEVIKQRAD-LKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 192 D~~~-~~l~~ll~~~~~-~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
|+.. ..+.+++....+ .+.|||++|||++.+..+||++++|+ .|+.
T Consensus 495 D~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~-~G~i 542 (623)
T PRK10261 495 DVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMY-LGQI 542 (623)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEE-CCEE
Confidence 9887 778888876644 48999999999999999999999998 5653
No 201
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.96 E-value=1.5e-30 Score=244.78 Aligned_cols=182 Identities=17% Similarity=0.212 Sum_probs=133.0
Q ss_pred HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhccccc----CCCEEEeecCchhhhHH-------------HHHHHh
Q psy2071 65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKS----VGAKAVACTQPRRVAAM-------------SVAQRV 127 (302)
Q Consensus 65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~----~G~~~i~~~~~~~~~~~-------------~~~~~~ 127 (302)
.+++++++.|++||++||+|+|||||||+...+.|++++. +|++.+.|.+....... .+...-
T Consensus 23 ~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~~ 102 (539)
T COG1123 23 PAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMT 102 (539)
T ss_pred eeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEecCchh
Confidence 4689999999999999999999999999999999999877 69999998753222111 111111
Q ss_pred hhhhccccccceeeeeeecC-------------------CCCc---cccccccCHHHHHHHhccccCCCCCcEEEEcCCC
Q psy2071 128 SEEMDCQLGQEVGYSIRFED-------------------CSSP---KTVLKYMTDGMLLREGMSDPMLENYQVILLDEAH 185 (302)
Q Consensus 128 ~~~~~~~~~~~v~~~~~~~~-------------------~~~~---~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~ 185 (302)
+..+..+++..+...++.+. .... +.....|||||+||++||+||+.+|++||+||
T Consensus 103 slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv~iAmALa~~P~LLIaDE-- 180 (539)
T COG1123 103 SLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADE-- 180 (539)
T ss_pred hcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHHHHHHHHhCCCCEEEECC--
Confidence 11111223322222111111 0111 23567799999999999999999999999999
Q ss_pred CCCcchHHHH-HHHHHHHHHc-CCCcEEEEEEecCHHHHHhhccCCCeee---ecCcCCccceeecCCC
Q psy2071 186 ERTLATDILM-GVLKEVIKQR-ADLKLVIMSATLDAGKFQQYFDNAPLMN---VPGRTHPVEIFYTPEP 249 (302)
Q Consensus 186 ~p~~~lD~~~-~~l~~ll~~~-~~~~~~ii~~thd~~~~~~~~d~~~~l~---i~g~~~~~~~~~~~~~ 249 (302)
||.+||+.. ..+.++++.. .+.|++++++|||++.++++||++.||+ +...+.+.+++..|.+
T Consensus 181 -PTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE~G~~~~i~~~p~h 248 (539)
T COG1123 181 -PTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVETGPTEEILSNPQH 248 (539)
T ss_pred -CccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEEecCHHHHHhccCC
Confidence 999999887 6777777754 4679999999999999999999999999 3334466666665543
No 202
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=1.5e-30 Score=226.87 Aligned_cols=170 Identities=16% Similarity=0.177 Sum_probs=127.3
Q ss_pred HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhH-----HHHHHHhhhhhccccccce
Q psy2071 65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAA-----MSVAQRVSEEMDCQLGQEV 139 (302)
Q Consensus 65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~v 139 (302)
.+.+++++.|++|++++|+|+||||||||+++|+|+++|+.|.+.+.|.+...... ..+.+........++.+++
T Consensus 14 ~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~nl 93 (232)
T cd03300 14 VALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVNTVFQNYALFPHLTVFENI 93 (232)
T ss_pred eeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcceEEEecccccCCCCcHHHHH
Confidence 35789999999999999999999999999999999999999999998764321110 0001111111122333333
Q ss_pred eeeee-------------------ecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHH
Q psy2071 140 GYSIR-------------------FEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLK 199 (302)
Q Consensus 140 ~~~~~-------------------~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~ 199 (302)
.+... +......++.+..||+||+||++||+|++.+|+++|||| |+.++|+.. ..+.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDE---P~~gLD~~~~~~l~ 170 (232)
T cd03300 94 AFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDE---PLGALDLKLRKDMQ 170 (232)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC---CcccCCHHHHHHHH
Confidence 22110 011112345567899999999999999999999999999 999999887 7888
Q ss_pred HHHHHcCC-CcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 200 EVIKQRAD-LKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 200 ~ll~~~~~-~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
+++....+ .+.||+++||+.+++.++||++++|+ .|+.
T Consensus 171 ~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~-~G~~ 209 (232)
T cd03300 171 LELKRLQKELGITFVFVTHDQEEALTMSDRIAVMN-KGKI 209 (232)
T ss_pred HHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEE-CCEE
Confidence 88876654 37899999999999999999999998 6654
No 203
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=2.5e-30 Score=230.39 Aligned_cols=168 Identities=18% Similarity=0.153 Sum_probs=124.7
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHH---Hhhh-----hhcccccc
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQ---RVSE-----EMDCQLGQ 137 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~---~~~~-----~~~~~~~~ 137 (302)
+++++++.|++|++++|+||||||||||+++|+|+++|++|++.++|............. .+.+ ....++.+
T Consensus 24 ~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~ 103 (269)
T PRK13648 24 TLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKY 103 (269)
T ss_pred ceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheeEEEeChHHhcccccHHH
Confidence 578999999999999999999999999999999999999999999986542211111111 1111 11112222
Q ss_pred ceeeeee-------------------ecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HH
Q psy2071 138 EVGYSIR-------------------FEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GV 197 (302)
Q Consensus 138 ~v~~~~~-------------------~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~ 197 (302)
++.+... +......+..+..||+||+||++||+|++.+|++||||| |++++|+.. ..
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDE---Pt~~LD~~~~~~ 180 (269)
T PRK13648 104 DVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILDE---ATSMLDPDARQN 180 (269)
T ss_pred HHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC---CcccCCHHHHHH
Confidence 2222110 000112345567899999999999999999999999999 999999887 77
Q ss_pred HHHHHHHcCC-CcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 198 LKEVIKQRAD-LKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 198 l~~ll~~~~~-~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
+.+++.+..+ .+.|+|++||+.+++.. ||++++|+ .|+.
T Consensus 181 l~~~L~~~~~~~~~tiiivtH~~~~~~~-~d~i~~l~-~G~i 220 (269)
T PRK13648 181 LLDLVRKVKSEHNITIISITHDLSEAME-ADHVIVMN-KGTV 220 (269)
T ss_pred HHHHHHHHHHhcCCEEEEEecCchHHhc-CCEEEEEE-CCEE
Confidence 8888876644 47899999999999975 99999998 6664
No 204
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=7.9e-30 Score=222.85 Aligned_cols=167 Identities=18% Similarity=0.213 Sum_probs=124.9
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHH---Hhh---hhhccccccce
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQ---RVS---EEMDCQLGQEV 139 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~---~~~---~~~~~~~~~~v 139 (302)
..+++++.|++|++++|+|+||||||||+++|+|+++|++|++.++|.+........... ++. ..+..++.+++
T Consensus 16 ~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~nl 95 (236)
T cd03253 16 VLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGVVPQDTVLFNDTIGYNI 95 (236)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEEECCCChhhcchHHHHH
Confidence 578899999999999999999999999999999999999999999886543211110000 000 11123444444
Q ss_pred eeeeeec------------C-------C-----CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH
Q psy2071 140 GYSIRFE------------D-------C-----SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM 195 (302)
Q Consensus 140 ~~~~~~~------------~-------~-----~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~ 195 (302)
.+..... . . ...+.....||+||+||++||+||+.+|++||||| |++++|+..
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~llllDE---P~~~LD~~~ 172 (236)
T cd03253 96 RYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDE---ATSALDTHT 172 (236)
T ss_pred hhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeC---CcccCCHHH
Confidence 3321000 0 0 00122356799999999999999999999999999 999999887
Q ss_pred -HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 196 -GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 196 -~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
..+.+++....+ +.++|++||+.+.+.. ||++++|+ .|+.
T Consensus 173 ~~~l~~~l~~~~~-~~tiii~sh~~~~~~~-~d~~~~l~-~g~i 213 (236)
T cd03253 173 EREIQAALRDVSK-GRTTIVIAHRLSTIVN-ADKIIVLK-DGRI 213 (236)
T ss_pred HHHHHHHHHHhcC-CCEEEEEcCCHHHHHh-CCEEEEEE-CCEE
Confidence 778888887766 8899999999999965 99999998 6654
No 205
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.96 E-value=4.7e-30 Score=219.95 Aligned_cols=166 Identities=14% Similarity=0.176 Sum_probs=125.3
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHh---hh---hhccccccce
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRV---SE---EMDCQLGQEV 139 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~---~~---~~~~~~~~~v 139 (302)
+.+++++.|++|++++|+|+||||||||+++|+|+++|++|++.+.|..............+ .+ .+..++.+++
T Consensus 23 ~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~~~l 102 (207)
T cd03369 23 VLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFSGTIRSNL 102 (207)
T ss_pred cccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhhEEEEecCCcccCccHHHHh
Confidence 57899999999999999999999999999999999999999999988654221111111111 11 1122444444
Q ss_pred eeeeeec-----CCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEE
Q psy2071 140 GYSIRFE-----DCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVIKQRADLKLVIM 213 (302)
Q Consensus 140 ~~~~~~~-----~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii 213 (302)
.+..... .....+.....||+||+||+++||+++.+|+++|||| |++++|+.. ..+.+++....+ +.|++
T Consensus 103 ~~~~~~~~~~~~~~l~~~~~~~~LS~G~~qrv~laral~~~p~llllDE---P~~~LD~~~~~~l~~~l~~~~~-~~tii 178 (207)
T cd03369 103 DPFDEYSDEEIYGALRVSEGGLNLSQGQRQLLCLARALLKRPRVLVLDE---ATASIDYATDALIQKTIREEFT-NSTIL 178 (207)
T ss_pred cccCCCCHHHHHHHhhccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeC---CcccCCHHHHHHHHHHHHHhcC-CCEEE
Confidence 3211000 0001234567899999999999999999999999999 999999887 778888887654 78999
Q ss_pred EEecCHHHHHhhccCCCeeeecCc
Q psy2071 214 SATLDAGKFQQYFDNAPLMNVPGR 237 (302)
Q Consensus 214 ~~thd~~~~~~~~d~~~~l~i~g~ 237 (302)
++||+.+.+.. ||++++|+ .|+
T Consensus 179 i~th~~~~~~~-~d~v~~l~-~g~ 200 (207)
T cd03369 179 TIAHRLRTIID-YDKILVMD-AGE 200 (207)
T ss_pred EEeCCHHHHhh-CCEEEEEE-CCE
Confidence 99999999876 99999998 665
No 206
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=1.9e-30 Score=228.24 Aligned_cols=169 Identities=18% Similarity=0.239 Sum_probs=126.0
Q ss_pred HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhccc---ccCCCEEEeecCchhhhHHHHHH---Hhhh---hhcccc
Q psy2071 65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYS---KSVGAKAVACTQPRRVAAMSVAQ---RVSE---EMDCQL 135 (302)
Q Consensus 65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~---~~~G~~~i~~~~~~~~~~~~~~~---~~~~---~~~~~~ 135 (302)
.+++++++.+++|++++|+|+||||||||+++|+|++. |++|++.++|.+........... .+.+ .+..++
T Consensus 16 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~l~~~tv 95 (246)
T PRK14269 16 QALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVFVKSI 95 (246)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhEEEEecCCccccccH
Confidence 35789999999999999999999999999999999974 68999999886543211101011 1111 112244
Q ss_pred ccceeeeeee--------------------cCC-----CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcc
Q psy2071 136 GQEVGYSIRF--------------------EDC-----SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLA 190 (302)
Q Consensus 136 ~~~v~~~~~~--------------------~~~-----~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~ 190 (302)
.+++.+.... ... ...+.....||+||+||+++|+||+.+|++||||| |+++
T Consensus 96 ~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDE---P~~~ 172 (246)
T PRK14269 96 YENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIKPKLLLLDE---PTSA 172 (246)
T ss_pred HHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcC---Cccc
Confidence 4444332100 000 01233456799999999999999999999999999 9999
Q ss_pred hHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 191 TDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 191 lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
+|+.. ..+.+++..... +.|++++||+.+++..+||++++|+ .|+.
T Consensus 173 LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~~~~~~~d~i~~l~-~G~i 219 (246)
T PRK14269 173 LDPISSGVIEELLKELSH-NLSMIMVTHNMQQGKRVADYTAFFH-LGEL 219 (246)
T ss_pred CCHHHHHHHHHHHHHHhC-CCEEEEEecCHHHHHhhCcEEEEEE-CCEE
Confidence 99877 778888876654 7899999999999999999999998 6664
No 207
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.96 E-value=2.4e-30 Score=227.73 Aligned_cols=168 Identities=15% Similarity=0.166 Sum_probs=125.9
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHH---HHHhhh----hhccccccc
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSV---AQRVSE----EMDCQLGQE 138 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~---~~~~~~----~~~~~~~~~ 138 (302)
.++++++.|++|++++|+|+||||||||+++|+|+++ .+|++.++|.+......... ..++.+ ....++.++
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~-~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~~n 89 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP-GSGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVFQY 89 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-CCeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHHHH
Confidence 4788999999999999999999999999999999985 58999998875432111110 111111 122344444
Q ss_pred eeeeeeec------------------CCCCccccccccCHHHHHHHhccccCCC-------CCcEEEEcCCCCCCcchHH
Q psy2071 139 VGYSIRFE------------------DCSSPKTVLKYMTDGMLLREGMSDPMLE-------NYQVILLDEAHERTLATDI 193 (302)
Q Consensus 139 v~~~~~~~------------------~~~~~~~~~~~lS~G~~qr~~la~al~~-------~p~lliLDE~~~p~~~lD~ 193 (302)
+.+..... .....++.+..||+||+||++||+||+. +|++||||| |++++|+
T Consensus 90 l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllDE---Pt~~LD~ 166 (248)
T PRK03695 90 LTLHQPDKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDE---PMNSLDV 166 (248)
T ss_pred HHhcCccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCEEEEcC---CcccCCH
Confidence 43321100 0011234567799999999999999997 679999999 9999998
Q ss_pred HH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 194 LM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 194 ~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
.. ..+.+++....+.+.|+|++||+++++..+||++++|+ .|+.
T Consensus 167 ~~~~~l~~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~-~G~i 211 (248)
T PRK03695 167 AQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLK-QGKL 211 (248)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEE-CCEE
Confidence 87 77888888766568899999999999999999999998 6764
No 208
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.96 E-value=3.2e-30 Score=236.87 Aligned_cols=178 Identities=16% Similarity=0.162 Sum_probs=146.4
Q ss_pred HhhcCCChhHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCch--------hhhHHHHHHHh
Q psy2071 56 RKRITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPR--------RVAAMSVAQRV 127 (302)
Q Consensus 56 ~~r~~lp~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~--------~~~~~~~~~~~ 127 (302)
+..+.+|.+.+.+++++.|.+|||.+|+|+||+|||||+++|.|+++|++|++.++|...+ +.+...+.|.+
T Consensus 9 ~itK~f~~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GIGMVhQHF 88 (501)
T COG3845 9 GITKRFPGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGIGMVHQHF 88 (501)
T ss_pred ccEEEcCCEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcCCcEEeecc
Confidence 3445688888899999999999999999999999999999999999999999999997632 11222333444
Q ss_pred hhhhccccccceeeeeee----------------------cCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCC
Q psy2071 128 SEEMDCQLGQEVGYSIRF----------------------EDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAH 185 (302)
Q Consensus 128 ~~~~~~~~~~~v~~~~~~----------------------~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~ 185 (302)
......|+.+|+.....- ......+..+..||-|++||+.|.++|..++++|||||
T Consensus 89 ~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr~a~iLILDE-- 166 (501)
T COG3845 89 MLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGARLLILDE-- 166 (501)
T ss_pred ccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHhcCCCEEEEcC--
Confidence 445567777776554421 11123456778899999999999999999999999999
Q ss_pred CCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCc
Q psy2071 186 ERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGR 237 (302)
Q Consensus 186 ~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~ 237 (302)
||+-|-|.. +.+.++++.+++.|.+||++||-++++.++||++.||+ .|+
T Consensus 167 -PTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR-~Gk 217 (501)
T COG3845 167 -PTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLR-RGK 217 (501)
T ss_pred -CcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEe-CCe
Confidence 999999877 78888888888899999999999999999999999999 554
No 209
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=3.7e-30 Score=230.13 Aligned_cols=168 Identities=15% Similarity=0.175 Sum_probs=127.1
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHH-------HHHh-hhhhcccccc
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSV-------AQRV-SEEMDCQLGQ 137 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~-------~~~~-~~~~~~~~~~ 137 (302)
+++++++.|++|++++|+|+||||||||+++|+|+++|++|++.+.|........... .+.. ......++.+
T Consensus 22 ~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e 101 (277)
T PRK13642 22 QLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVED 101 (277)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcceEEEEECHHHhhccCCHHH
Confidence 5789999999999999999999999999999999999999999998865422111000 1111 0122334555
Q ss_pred ceeeeeeecC-------------------CCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HH
Q psy2071 138 EVGYSIRFED-------------------CSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GV 197 (302)
Q Consensus 138 ~v~~~~~~~~-------------------~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~ 197 (302)
++.+...... ....++.+..||+||+||++||+||+.+|++||||| |++++|+.. ..
T Consensus 102 ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p~llllDE---Pt~~LD~~~~~~ 178 (277)
T PRK13642 102 DVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDE---STSMLDPTGRQE 178 (277)
T ss_pred HHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC---CcccCCHHHHHH
Confidence 5543211000 011234566799999999999999999999999999 999999887 77
Q ss_pred HHHHHHHcCC-CcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 198 LKEVIKQRAD-LKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 198 l~~ll~~~~~-~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
+.+++.+..+ .+.|||++||+++.+. .||++++|+ .|+.
T Consensus 179 l~~~l~~l~~~~g~tiil~sH~~~~~~-~~d~i~~l~-~G~i 218 (277)
T PRK13642 179 IMRVIHEIKEKYQLTVLSITHDLDEAA-SSDRILVMK-AGEI 218 (277)
T ss_pred HHHHHHHHHHhcCCEEEEEeCCHHHHH-hCCEEEEEE-CCEE
Confidence 8888876654 4899999999999997 699999998 6664
No 210
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.96 E-value=1.3e-30 Score=220.46 Aligned_cols=153 Identities=14% Similarity=0.149 Sum_probs=112.7
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchh----h-hHHHHHHHhhh-----hhcccc
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRR----V-AAMSVAQRVSE-----EMDCQL 135 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~----~-~~~~~~~~~~~-----~~~~~~ 135 (302)
+++++++.|++|++++|+||||||||||+++|+|+++|++|.+.++|.+... . ........+.+ .+..++
T Consensus 7 il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~tv 86 (190)
T TIGR01166 7 VLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFAADV 86 (190)
T ss_pred eecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhccccccH
Confidence 5788999999999999999999999999999999999999999998865320 0 00000011111 112244
Q ss_pred ccceeeeee-------------------ecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-
Q psy2071 136 GQEVGYSIR-------------------FEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM- 195 (302)
Q Consensus 136 ~~~v~~~~~-------------------~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~- 195 (302)
.+++.+... +......++.+..||+||+||++||+||+.+|++||||| |++++|+..
T Consensus 87 ~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE---Pt~~LD~~~~ 163 (190)
T TIGR01166 87 DQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDE---PTAGLDPAGR 163 (190)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC---CcccCCHHHH
Confidence 444432110 000112345667799999999999999999999999999 999999887
Q ss_pred HHHHHHHHHcCCCcEEEEEEecCHHH
Q psy2071 196 GVLKEVIKQRADLKLVIMSATLDAGK 221 (302)
Q Consensus 196 ~~l~~ll~~~~~~~~~ii~~thd~~~ 221 (302)
..+.+++....+.+.+|+++||++++
T Consensus 164 ~~~~~~l~~~~~~~~tili~sH~~~~ 189 (190)
T TIGR01166 164 EQMLAILRRLRAEGMTVVISTHDVDL 189 (190)
T ss_pred HHHHHHHHHHHHcCCEEEEEeecccc
Confidence 77888887765558899999999864
No 211
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.96 E-value=5.1e-30 Score=220.60 Aligned_cols=160 Identities=10% Similarity=0.017 Sum_probs=116.4
Q ss_pred HHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEE-EeecCchhhhHHHHHHHhhhhhccccccceeeeee-
Q psy2071 67 RTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKA-VACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIR- 144 (302)
Q Consensus 67 ~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~- 144 (302)
++++++.|++|++++|+||||||||||+++|+|+++|++|++. +.+.... .+ .........++.+++.+...
T Consensus 3 l~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~~-~~-----~~~~l~~~ltv~enl~~~~~~ 76 (213)
T PRK15177 3 LDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDALP-LG-----ANSFILPGLTGEENARMMASL 76 (213)
T ss_pred eeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCceec-cc-----cccccCCcCcHHHHHHHHHHH
Confidence 5788999999999999999999999999999999999999986 5543210 00 00000011122222221110
Q ss_pred --------------e-cCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHH-HcCC
Q psy2071 145 --------------F-EDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVIK-QRAD 207 (302)
Q Consensus 145 --------------~-~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~-~~~~ 207 (302)
. ......++.+..||+||+||+++|+|++.+|+++|||| |+.++|+.. ..+.+++. ..++
T Consensus 77 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDE---P~~~lD~~~~~~~~~~l~~~~~~ 153 (213)
T PRK15177 77 YGLDGDEFSHFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADG---KLYTGDNATQLRMQAALACQLQQ 153 (213)
T ss_pred cCCCHHHHHHHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECC---CCccCCHHHHHHHHHHHHHHhhC
Confidence 0 00112345678899999999999999999999999999 999999877 55666553 3333
Q ss_pred CcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 208 LKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 208 ~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
.+++++||+++.+..+||++++|+ .|+.
T Consensus 154 --~~ii~vsH~~~~~~~~~d~i~~l~-~G~i 181 (213)
T PRK15177 154 --KGLIVLTHNPRLIKEHCHAFGVLL-HGKI 181 (213)
T ss_pred --CcEEEEECCHHHHHHhcCeeEEEE-CCeE
Confidence 467889999999999999999998 6654
No 212
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.96 E-value=1.6e-30 Score=230.52 Aligned_cols=169 Identities=17% Similarity=0.214 Sum_probs=125.0
Q ss_pred HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhccc-----ccCCCEEEeecCchh--hhHHHHHH---Hhhh---hh
Q psy2071 65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYS-----KSVGAKAVACTQPRR--VAAMSVAQ---RVSE---EM 131 (302)
Q Consensus 65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~-----~~~G~~~i~~~~~~~--~~~~~~~~---~~~~---~~ 131 (302)
.+++++++.|++|++++|+|+||||||||+++|+|+++ |++|++.+.|..... ........ .+.+ ..
T Consensus 27 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 106 (260)
T PRK10744 27 HALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKPTPF 106 (260)
T ss_pred EEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchHHHhcceEEEecCCccC
Confidence 35789999999999999999999999999999999986 478999998865321 00000001 1111 11
Q ss_pred ccccccceeeeeee-------------------cCC-----CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCC
Q psy2071 132 DCQLGQEVGYSIRF-------------------EDC-----SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHER 187 (302)
Q Consensus 132 ~~~~~~~v~~~~~~-------------------~~~-----~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p 187 (302)
..++.+++.+.... ... ...++....||+||+||++||+||+.+|++||||| |
T Consensus 107 ~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDE---P 183 (260)
T PRK10744 107 PMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIARGIAIRPEVLLLDE---P 183 (260)
T ss_pred cCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHHHHHHHCCCCEEEEcC---C
Confidence 13444444322110 000 01234556799999999999999999999999999 9
Q ss_pred CcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 188 TLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 188 ~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
++++|+.. ..+.+++.+..+ +.|||++||+.+.+..+||++++|+ .|+.
T Consensus 184 t~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~-~G~i 233 (260)
T PRK10744 184 CSALDPISTGRIEELITELKQ-DYTVVIVTHNMQQAARCSDYTAFMY-LGEL 233 (260)
T ss_pred CccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHHHHHHhCCEEEEEE-CCEE
Confidence 99999887 778888877654 6799999999999999999999998 6653
No 213
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.96 E-value=1.7e-30 Score=229.06 Aligned_cols=169 Identities=17% Similarity=0.169 Sum_probs=124.9
Q ss_pred HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccc-----cCCCEEEeecCchhh--h---HHHHHHHhhhh---h
Q psy2071 65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSK-----SVGAKAVACTQPRRV--A---AMSVAQRVSEE---M 131 (302)
Q Consensus 65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~-----~~G~~~i~~~~~~~~--~---~~~~~~~~~~~---~ 131 (302)
.+.+++++.|++|++++|+|+||||||||+++|+|+.++ ++|++.+.|...... . .......+.+. .
T Consensus 17 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 96 (250)
T PRK14240 17 QALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNPF 96 (250)
T ss_pred eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHHhccEEEEecCCccC
Confidence 357899999999999999999999999999999998763 689999988654210 0 00000111111 1
Q ss_pred ccccccceeeeeeec-------------------CC-----CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCC
Q psy2071 132 DCQLGQEVGYSIRFE-------------------DC-----SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHER 187 (302)
Q Consensus 132 ~~~~~~~v~~~~~~~-------------------~~-----~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p 187 (302)
..++.+++.+..... .. ...++.+..||+||+||++||+||+.+|++||||| |
T Consensus 97 ~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE---P 173 (250)
T PRK14240 97 PMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDE---P 173 (250)
T ss_pred cccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC---C
Confidence 123444443221000 00 01134567799999999999999999999999999 9
Q ss_pred CcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 188 TLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 188 ~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
++++|+.. ..+.+++.+..+ +.||+++||+++.+.++||++++|+ .|+.
T Consensus 174 ~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~~~~~~~d~v~~l~-~G~i 223 (250)
T PRK14240 174 TSALDPISTLKIEELIQELKK-DYTIVIVTHNMQQASRISDKTAFFL-NGEI 223 (250)
T ss_pred CccCCHHHHHHHHHHHHHHhc-CCeEEEEEeCHHHHHhhCCEEEEEE-CCEE
Confidence 99999887 778888877654 6899999999999999999999998 6654
No 214
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=1.8e-30 Score=231.15 Aligned_cols=170 Identities=14% Similarity=0.173 Sum_probs=124.8
Q ss_pred hHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhccc-----ccCCCEEEeecCchh--hhHHHH---HHHhhhh---
Q psy2071 64 FEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYS-----KSVGAKAVACTQPRR--VAAMSV---AQRVSEE--- 130 (302)
Q Consensus 64 ~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~-----~~~G~~~i~~~~~~~--~~~~~~---~~~~~~~--- 130 (302)
..+++++++.|++|++++|+|+||||||||+++|+|+.. |++|.+.+.|.+... ...... ..++.+.
T Consensus 34 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~ 113 (268)
T PRK14248 34 KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNLRREIGMVFQKPNP 113 (268)
T ss_pred ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHHHHhccEEEEecCCcc
Confidence 346789999999999999999999999999999999864 689999998865321 000000 0111111
Q ss_pred hccccccceeeeeee-------------------cCC-----CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCC
Q psy2071 131 MDCQLGQEVGYSIRF-------------------EDC-----SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHE 186 (302)
Q Consensus 131 ~~~~~~~~v~~~~~~-------------------~~~-----~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~ 186 (302)
+..++.+++.+.... ... ...++.+..||+||+||++||+||+.+|++|||||
T Consensus 114 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDE--- 190 (268)
T PRK14248 114 FPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTLAMKPAVLLLDE--- 190 (268)
T ss_pred CcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHHHHHHHhCCCCEEEEcC---
Confidence 111333333221100 000 01235567799999999999999999999999999
Q ss_pred CCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 187 RTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 187 p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
|++++|+.. ..+.+++....+ +.|||++||+++++..+||++++|+ .|+.
T Consensus 191 Pt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~~~~~~~d~v~~l~-~G~i 241 (268)
T PRK14248 191 PASALDPISNAKIEELITELKE-EYSIIIVTHNMQQALRVSDRTAFFL-NGDL 241 (268)
T ss_pred CCcccCHHHHHHHHHHHHHHhc-CCEEEEEEeCHHHHHHhCCEEEEEE-CCEE
Confidence 999999887 778888887654 5799999999999999999999998 6653
No 215
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=4.3e-30 Score=228.74 Aligned_cols=165 Identities=16% Similarity=0.168 Sum_probs=123.1
Q ss_pred HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhccc-----ccCCCEEEeecCchh-----hhHHHHHHHhhhh---h
Q psy2071 65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYS-----KSVGAKAVACTQPRR-----VAAMSVAQRVSEE---M 131 (302)
Q Consensus 65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~-----~~~G~~~i~~~~~~~-----~~~~~~~~~~~~~---~ 131 (302)
.+++++++.|++|++++|+|+||||||||+++|+|+++ |++|++.+.|.+... .........+.+. +
T Consensus 27 ~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~ 106 (269)
T PRK14259 27 EAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNPF 106 (269)
T ss_pred EEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHHHHhhceEEEccCCccc
Confidence 36799999999999999999999999999999999987 589999998864321 0000000111111 1
Q ss_pred ccccccceeeeeeec-----------------CC-----CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCc
Q psy2071 132 DCQLGQEVGYSIRFE-----------------DC-----SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTL 189 (302)
Q Consensus 132 ~~~~~~~v~~~~~~~-----------------~~-----~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~ 189 (302)
..++.+++.+..... .. ...++.+..||+||+||++||+||+.+|++||||| |++
T Consensus 107 ~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDE---Pt~ 183 (269)
T PRK14259 107 PKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTIAIEPEVILMDE---PCS 183 (269)
T ss_pred hhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEcC---CCc
Confidence 123444433221100 00 01244557799999999999999999999999999 999
Q ss_pred chHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeee
Q psy2071 190 ATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMN 233 (302)
Q Consensus 190 ~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~ 233 (302)
++|+.. ..+.+++....+ +.|||++||+++++..+||++++|+
T Consensus 184 gLD~~~~~~l~~~l~~~~~-~~tiiivtH~~~~~~~~~d~i~~l~ 227 (269)
T PRK14259 184 ALDPISTLKIEETMHELKK-NFTIVIVTHNMQQAVRVSDMTAFFN 227 (269)
T ss_pred cCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhcCEEEEEe
Confidence 999887 778888887654 6899999999999999999999998
No 216
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.96 E-value=4e-30 Score=247.95 Aligned_cols=169 Identities=19% Similarity=0.197 Sum_probs=129.2
Q ss_pred HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhH--------HHHHHHhhhhhccccc
Q psy2071 65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAA--------MSVAQRVSEEMDCQLG 136 (302)
Q Consensus 65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~--------~~~~~~~~~~~~~~~~ 136 (302)
.+++++++.|++|++++|+|+||||||||+++|+|+++|++|++.+.|.+...... ..+.+........++.
T Consensus 18 ~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 97 (501)
T PRK11288 18 KALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGVAIIYQELHLVPEMTVA 97 (501)
T ss_pred EEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCEEEEEechhccCCCCHH
Confidence 35789999999999999999999999999999999999999999998865321100 0011111112223455
Q ss_pred cceeeeee----------------------ecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHH
Q psy2071 137 QEVGYSIR----------------------FEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDIL 194 (302)
Q Consensus 137 ~~v~~~~~----------------------~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~ 194 (302)
+++.+... +......++.+..|||||+||++||++|+.+|++||||| ||+++|+.
T Consensus 98 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDE---Pt~~LD~~ 174 (501)
T PRK11288 98 ENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDE---PTSSLSAR 174 (501)
T ss_pred HHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHHhCCCEEEEcC---CCCCCCHH
Confidence 55443210 000011245567799999999999999999999999999 99999988
Q ss_pred H-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCc
Q psy2071 195 M-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGR 237 (302)
Q Consensus 195 ~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~ 237 (302)
. ..+.+++....+.|.|||++|||++++..+||++++|+ .|+
T Consensus 175 ~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~-~G~ 217 (501)
T PRK11288 175 EIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFK-DGR 217 (501)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEE-CCE
Confidence 7 77888888766668899999999999999999999998 554
No 217
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.96 E-value=1.4e-29 Score=244.16 Aligned_cols=168 Identities=15% Similarity=0.146 Sum_probs=127.8
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhh-HH-------HHHHHh---hhhhccc
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVA-AM-------SVAQRV---SEEMDCQ 134 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~-~~-------~~~~~~---~~~~~~~ 134 (302)
+.+++++.|++|++++|+||||||||||+++|+|+++|++|.+.+.|....... .. .+.+.. ......+
T Consensus 268 ~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~t 347 (501)
T PRK11288 268 LREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPVHS 347 (501)
T ss_pred cccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCCCC
Confidence 578999999999999999999999999999999999999999999876432110 00 001100 0111223
Q ss_pred cccceeeee-------------------------eecC-CCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCC
Q psy2071 135 LGQEVGYSI-------------------------RFED-CSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERT 188 (302)
Q Consensus 135 ~~~~v~~~~-------------------------~~~~-~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~ 188 (302)
+.+++.+.. .+.. ....++.+..|||||+||++||++|+.+|++||||| ||
T Consensus 348 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~al~~~p~lllLDE---Pt 424 (501)
T PRK11288 348 VADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGRWLSEDMKVILLDE---PT 424 (501)
T ss_pred HHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHHHHHccCCCEEEEcC---CC
Confidence 333332210 0111 012356678899999999999999999999999999 99
Q ss_pred cchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCc
Q psy2071 189 LATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGR 237 (302)
Q Consensus 189 ~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~ 237 (302)
+++|+.. ..+.+++....+.|.+||++|||++++..+||++++|+ .|+
T Consensus 425 ~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~i~~l~-~g~ 473 (501)
T PRK11288 425 RGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMR-EGR 473 (501)
T ss_pred CCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCEEEEEE-CCE
Confidence 9999887 78888887766668899999999999999999999998 665
No 218
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=2.1e-30 Score=226.46 Aligned_cols=169 Identities=17% Similarity=0.193 Sum_probs=126.6
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhH-----HHHHHHhhhhhcccccccee
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAA-----MSVAQRVSEEMDCQLGQEVG 140 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~v~ 140 (302)
.++++++.|.+|++++|+|+||||||||+++|+|+++|+.|++.+.|........ ..+.+........++.+++.
T Consensus 14 ~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~ 93 (235)
T cd03299 14 KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYKNIA 93 (235)
T ss_pred eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHHHHH
Confidence 4788999999999999999999999999999999999999999998865322110 00001101111223333333
Q ss_pred eeee-------------------ecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHH
Q psy2071 141 YSIR-------------------FEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKE 200 (302)
Q Consensus 141 ~~~~-------------------~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ 200 (302)
+... +......++.+..||+||+||++||+|++.+|+++|||| |++++|... ..+.+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDE---Pt~gLD~~~~~~l~~ 170 (235)
T cd03299 94 YGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDE---PFSALDVRTKEKLRE 170 (235)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEECC---CcccCCHHHHHHHHH
Confidence 2110 000112345567799999999999999999999999999 999999887 77888
Q ss_pred HHHHcCC-CcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 201 VIKQRAD-LKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 201 ll~~~~~-~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
+++.... .+.|++++||+++++.++||++++|+ .|+.
T Consensus 171 ~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~-~G~i 208 (235)
T cd03299 171 ELKKIRKEFGVTVLHVTHDFEEAWALADKVAIML-NGKL 208 (235)
T ss_pred HHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEE-CCEE
Confidence 8876543 37899999999999999999999998 6664
No 219
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.96 E-value=2e-30 Score=226.79 Aligned_cols=170 Identities=18% Similarity=0.174 Sum_probs=127.2
Q ss_pred HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHH-----HHHHHhhhhhccccccce
Q psy2071 65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAM-----SVAQRVSEEMDCQLGQEV 139 (302)
Q Consensus 65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~v 139 (302)
.+.+++++.+.+|++++|+|+||||||||+++|+|+++|+.|++.++|.+....... .+.+........++.+++
T Consensus 14 ~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl 93 (237)
T TIGR00968 14 QALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIGFVFQHYALFKHLTVRDNI 93 (237)
T ss_pred eeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcCEEEEecChhhccCCcHHHHH
Confidence 367889999999999999999999999999999999999999999988653221100 001111111122333333
Q ss_pred eeeeee-------------------cCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHH
Q psy2071 140 GYSIRF-------------------EDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLK 199 (302)
Q Consensus 140 ~~~~~~-------------------~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~ 199 (302)
.+...+ ......++....||+||+||+++|++|+.+|+++|||| |++++|+.. ..+.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDE---P~~~LD~~~~~~~~ 170 (237)
T TIGR00968 94 AFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDE---PFGALDAKVRKELR 170 (237)
T ss_pred HhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC---CcccCCHHHHHHHH
Confidence 322111 00011244556799999999999999999999999999 999999887 7788
Q ss_pred HHHHHcCCC-cEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 200 EVIKQRADL-KLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 200 ~ll~~~~~~-~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
+++.+..+. +.|++++||+.+++..+||++++|+ .|+.
T Consensus 171 ~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~-~g~i 209 (237)
T TIGR00968 171 SWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMS-NGKI 209 (237)
T ss_pred HHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEE-CCEE
Confidence 888765543 7899999999999999999999998 7764
No 220
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.96 E-value=2.3e-30 Score=221.92 Aligned_cols=163 Identities=17% Similarity=0.189 Sum_probs=120.6
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhh----hhccccccceee
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSE----EMDCQLGQEVGY 141 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~----~~~~~~~~~v~~ 141 (302)
+++++++.|++|++++|+|+||||||||+++|+|+++|++|++.+.|.+............+.+ ....++.+++.+
T Consensus 17 ~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~l~~ 96 (207)
T PRK13539 17 LFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHYLGHRNAMKPALTVAENLEF 96 (207)
T ss_pred EEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcchhhHhhcEEecCCCcCCCCCcHHHHHHH
Confidence 5788999999999999999999999999999999999999999998865321111101111111 112344444332
Q ss_pred eeeec---------------CCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHc
Q psy2071 142 SIRFE---------------DCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVIKQR 205 (302)
Q Consensus 142 ~~~~~---------------~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~ 205 (302)
...+. .....+.....||+||+||++||+|++.+|++||||| |++++|+.. ..+.+++.+.
T Consensus 97 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDE---Pt~~LD~~~~~~l~~~l~~~ 173 (207)
T PRK13539 97 WAAFLGGEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDE---PTAALDAAAVALFAELIRAH 173 (207)
T ss_pred HHHhcCCcHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeC---CcccCCHHHHHHHHHHHHHH
Confidence 11110 0011244567799999999999999999999999999 999999887 7788888765
Q ss_pred CCCcEEEEEEecCHHHHHhhccCCCeee
Q psy2071 206 ADLKLVIMSATLDAGKFQQYFDNAPLMN 233 (302)
Q Consensus 206 ~~~~~~ii~~thd~~~~~~~~d~~~~l~ 233 (302)
.+.+.|++++||+.+++.. |+++.+.
T Consensus 174 ~~~~~tiii~sH~~~~~~~--~~~~~~~ 199 (207)
T PRK13539 174 LAQGGIVIAATHIPLGLPG--ARELDLG 199 (207)
T ss_pred HHCCCEEEEEeCCchhhcc--CcEEeec
Confidence 5558899999999999886 7776664
No 221
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.96 E-value=5e-30 Score=228.74 Aligned_cols=167 Identities=17% Similarity=0.190 Sum_probs=122.4
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhh------hccccccce
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEE------MDCQLGQEV 139 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~------~~~~~~~~v 139 (302)
+.+++++.|++|++++|+||||||||||+++|+|+++|++|++.++|.............++.+. ....+.+++
T Consensus 22 il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i 101 (272)
T PRK15056 22 ALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAYVPQSEEVDWSFPVLVEDVV 101 (272)
T ss_pred EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHHhhccceEEEeccccccccCCCcchhhhe
Confidence 46889999999999999999999999999999999999999999988653211000000111111 011122222
Q ss_pred eeee-----------------------eecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-
Q psy2071 140 GYSI-----------------------RFEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM- 195 (302)
Q Consensus 140 ~~~~-----------------------~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~- 195 (302)
.+.. .+......++.+..||+||+||++||+||+.+|++||||| |++++|+..
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDE---Pt~~LD~~~~ 178 (272)
T PRK15056 102 MMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDE---PFTGVDVKTE 178 (272)
T ss_pred ecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC---CCccCCHHHH
Confidence 1100 0000011244567799999999999999999999999999 999999887
Q ss_pred HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCc
Q psy2071 196 GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGR 237 (302)
Q Consensus 196 ~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~ 237 (302)
..+.+++....+.+.|||++||+.+.+..+||+++++ .|+
T Consensus 179 ~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~v~~~--~G~ 218 (272)
T PRK15056 179 ARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMV--KGT 218 (272)
T ss_pred HHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE--CCE
Confidence 7788888876656889999999999999999998554 465
No 222
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.95 E-value=3.2e-30 Score=227.83 Aligned_cols=169 Identities=18% Similarity=0.186 Sum_probs=123.2
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccc----cCCCEEEeecCchh-------hhHHHHHHHhhhhhccc
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSK----SVGAKAVACTQPRR-------VAAMSVAQRVSEEMDCQ 134 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~----~~G~~~i~~~~~~~-------~~~~~~~~~~~~~~~~~ 134 (302)
+++++++.|.+|++++|+|+||||||||+++|+|+++| ++|++.++|.+... ++..............+
T Consensus 18 il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~i~~v~q~~~~~~~~~~~ 97 (254)
T PRK10418 18 LVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKIATIMQNPRSAFNPLHT 97 (254)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccceEEEEecCCccccCcccc
Confidence 57889999999999999999999999999999999999 89999998865321 11111100000000011
Q ss_pred cccceee----------------eeeecCCC----CccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHH
Q psy2071 135 LGQEVGY----------------SIRFEDCS----SPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDIL 194 (302)
Q Consensus 135 ~~~~v~~----------------~~~~~~~~----~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~ 194 (302)
+.+++.+ .+...... ..++....||+||+||++||+||+.+|++||||| |++++|+.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDE---Pt~~LD~~ 174 (254)
T PRK10418 98 MHTHARETCLALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAPFIIADE---PTTDLDVV 174 (254)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhcCCCEEEEeC---CCcccCHH
Confidence 1111100 00000111 1245567899999999999999999999999999 99999987
Q ss_pred H-HHHHHHHHHcC-CCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 195 M-GVLKEVIKQRA-DLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 195 ~-~~l~~ll~~~~-~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
. ..+.+++.... +.+.||+++||+++.+..+||++++|+ .|+.
T Consensus 175 ~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~-~G~i 219 (254)
T PRK10418 175 AQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMS-HGRI 219 (254)
T ss_pred HHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEE-CCEE
Confidence 7 77778877654 347899999999999999999999998 6654
No 223
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=3.1e-30 Score=227.38 Aligned_cols=168 Identities=18% Similarity=0.186 Sum_probs=124.7
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccc-----cCCCEEEeecCchhh--hHHHH---HHHhhh---hhc
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSK-----SVGAKAVACTQPRRV--AAMSV---AQRVSE---EMD 132 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~-----~~G~~~i~~~~~~~~--~~~~~---~~~~~~---~~~ 132 (302)
+.+++++.|++|++++|+|+||||||||+++|+|+++| ++|++.++|.+.... ..... ...+.+ ...
T Consensus 18 ~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 97 (250)
T PRK14262 18 AVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTPFP 97 (250)
T ss_pred eEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHhhhhEEEEecCCccCc
Confidence 57899999999999999999999999999999999874 889999988653210 00000 011111 111
Q ss_pred cccccceeeeeeec-------------------CC-----CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCC
Q psy2071 133 CQLGQEVGYSIRFE-------------------DC-----SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERT 188 (302)
Q Consensus 133 ~~~~~~v~~~~~~~-------------------~~-----~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~ 188 (302)
.++.+++.+..... .. ...+..+..||+||+||++||+||+.+|++||||| |+
T Consensus 98 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~al~~~p~llllDE---P~ 174 (250)
T PRK14262 98 MSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARALAVEPEVILLDE---PT 174 (250)
T ss_pred ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHHHHhCCCCEEEEeC---Cc
Confidence 23333332211000 00 01234567799999999999999999999999999 99
Q ss_pred cchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 189 LATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 189 ~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
+++|+.. ..+.+++.+..+ +.|++++||+.+.+..+||++++|+ .|+.
T Consensus 175 ~~LD~~~~~~l~~~l~~~~~-~~tili~sH~~~~~~~~~d~i~~l~-~G~i 223 (250)
T PRK14262 175 SALDPIATQRIEKLLEELSE-NYTIVIVTHNIGQAIRIADYIAFMY-RGEL 223 (250)
T ss_pred cccCHHHHHHHHHHHHHHhc-CcEEEEEeCCHHHHHHhCCEEEEEE-CCEE
Confidence 9999887 778888887654 6799999999999999999999998 6654
No 224
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.95 E-value=1e-29 Score=226.40 Aligned_cols=169 Identities=15% Similarity=0.171 Sum_probs=127.2
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhccccc--------CCCEEEeecCchhhhHHHH---HHHhhh----h
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKS--------VGAKAVACTQPRRVAAMSV---AQRVSE----E 130 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~--------~G~~~i~~~~~~~~~~~~~---~~~~~~----~ 130 (302)
+++++++.|++|++++|+|+||||||||+++|+|+++|+ +|++.++|........... ...+.+ .
T Consensus 16 il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~v~q~~~~~ 95 (272)
T PRK13547 16 ILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRLARLRAVLPQAAQPA 95 (272)
T ss_pred EEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHHHHhhcEEecccCCCC
Confidence 578999999999999999999999999999999999998 8999998865432111110 011111 1
Q ss_pred hccccccceeeeeeec-----------------------CCCCccccccccCHHHHHHHhccccCC---------CCCcE
Q psy2071 131 MDCQLGQEVGYSIRFE-----------------------DCSSPKTVLKYMTDGMLLREGMSDPML---------ENYQV 178 (302)
Q Consensus 131 ~~~~~~~~v~~~~~~~-----------------------~~~~~~~~~~~lS~G~~qr~~la~al~---------~~p~l 178 (302)
+..++.+++.+..... .....++.+..||+||+||+++|++|+ .+|++
T Consensus 96 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~~~~~~~~~~p~l 175 (272)
T PRK13547 96 FAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRY 175 (272)
T ss_pred CCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhccccccccCCCCCE
Confidence 2334555543321000 000123455679999999999999999 59999
Q ss_pred EEEcCCCCCCcchHHHH-HHHHHHHHHcCCC-cEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 179 ILLDEAHERTLATDILM-GVLKEVIKQRADL-KLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 179 liLDE~~~p~~~lD~~~-~~l~~ll~~~~~~-~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
||||| |++++|+.. ..+.+++.+..+. +.|++++||+.+.+..+||++++|+ .|+.
T Consensus 176 llLDE---Pt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l~-~G~i 233 (272)
T PRK13547 176 LLLDE---PTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLA-DGAI 233 (272)
T ss_pred EEEcC---ccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEE-CCeE
Confidence 99999 999999887 7788888766543 7899999999999999999999998 6653
No 225
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.95 E-value=3.4e-30 Score=222.93 Aligned_cols=167 Identities=18% Similarity=0.125 Sum_probs=124.1
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhH------H----HHHHHhhhhhcccc
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAA------M----SVAQRVSEEMDCQL 135 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~------~----~~~~~~~~~~~~~~ 135 (302)
+.+++++.+++|++++|+|+||||||||+++|+|+++|++|++.++|........ . .+.+........++
T Consensus 20 il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~ 99 (220)
T TIGR02982 20 VLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLLGFLTA 99 (220)
T ss_pred EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHHhheEEEcCChhhcCCCCH
Confidence 5788999999999999999999999999999999999999999998875432110 0 00111111112344
Q ss_pred ccceeeeeeec--------------------CCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH
Q psy2071 136 GQEVGYSIRFE--------------------DCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM 195 (302)
Q Consensus 136 ~~~v~~~~~~~--------------------~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~ 195 (302)
.+++.+...+. .....++.+..||+||+||++||++++.+|++||||| |+.++|+..
T Consensus 100 ~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~~~p~illlDE---P~~~LD~~~ 176 (220)
T TIGR02982 100 RQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHRPKLVLADE---PTAALDSKS 176 (220)
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeC---CCCcCCHHH
Confidence 43333221110 0011234566799999999999999999999999999 999999877
Q ss_pred -HHHHHHHHHcCC-CcEEEEEEecCHHHHHhhccCCCeeeecCc
Q psy2071 196 -GVLKEVIKQRAD-LKLVIMSATLDAGKFQQYFDNAPLMNVPGR 237 (302)
Q Consensus 196 -~~l~~ll~~~~~-~~~~ii~~thd~~~~~~~~d~~~~l~i~g~ 237 (302)
..+.++++...+ .+.|++++||+++. .++||++++|+ .|+
T Consensus 177 ~~~l~~~l~~~~~~~~~tii~~sh~~~~-~~~~d~v~~l~-~g~ 218 (220)
T TIGR02982 177 GRDVVELMQKLAREQGCTILIVTHDNRI-LDVADRIVHME-DGK 218 (220)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEeCCHHH-HhhCCEEEEEE-CCE
Confidence 777888876543 47999999999984 58999999997 554
No 226
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=4.8e-30 Score=226.40 Aligned_cols=169 Identities=16% Similarity=0.105 Sum_probs=124.7
Q ss_pred HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhccccc-----CCCEEEeecCchh--h---h----HHHHHHHhhhh
Q psy2071 65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKS-----VGAKAVACTQPRR--V---A----AMSVAQRVSEE 130 (302)
Q Consensus 65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~-----~G~~~i~~~~~~~--~---~----~~~~~~~~~~~ 130 (302)
.+.+++++.|++|++++|+|+||||||||+++|+|+++|+ +|++.+.|..... . . ...+.+.....
T Consensus 18 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 97 (252)
T PRK14272 18 QAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRRRVGMVFQKPNPF 97 (252)
T ss_pred EeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHhhceeEEEeccCccC
Confidence 3578999999999999999999999999999999998864 7999998854321 0 0 00001111111
Q ss_pred hccccccceeeeee--------------------ecC----CCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCC
Q psy2071 131 MDCQLGQEVGYSIR--------------------FED----CSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHE 186 (302)
Q Consensus 131 ~~~~~~~~v~~~~~--------------------~~~----~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~ 186 (302)
...++.+++.+... +.. ....++.+..||+||+||++||++|+.+|++|||||
T Consensus 98 ~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE--- 174 (252)
T PRK14272 98 PTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARALAVEPEILLMDE--- 174 (252)
T ss_pred cCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC---
Confidence 11233333321110 000 011245567899999999999999999999999999
Q ss_pred CCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 187 RTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 187 p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
|++++|+.. ..+.+++++..+ +.|++++||+.+.+..+||++++|+ .|+.
T Consensus 175 P~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~-~G~i 225 (252)
T PRK14272 175 PTSALDPASTARIEDLMTDLKK-VTTIIIVTHNMHQAARVSDTTSFFL-VGDL 225 (252)
T ss_pred CCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHHHHHHhCCEEEEEE-CCEE
Confidence 999999887 778888887654 6899999999999999999999998 6654
No 227
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.95 E-value=2.5e-30 Score=229.06 Aligned_cols=165 Identities=15% Similarity=0.122 Sum_probs=122.1
Q ss_pred HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccc-----cCCCEEEeecCchh--h---hHH----HHHHHhhhh
Q psy2071 65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSK-----SVGAKAVACTQPRR--V---AAM----SVAQRVSEE 130 (302)
Q Consensus 65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~-----~~G~~~i~~~~~~~--~---~~~----~~~~~~~~~ 130 (302)
.+++++++.|++|++++|+|+||||||||+++|+|+++| ++|++.++|.+... . ... .+.+.....
T Consensus 18 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 97 (258)
T PRK14241 18 HAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPNPF 97 (258)
T ss_pred eeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHHhcceEEEccccccC
Confidence 467899999999999999999999999999999999874 69999998865311 0 000 001111111
Q ss_pred hccccccceeeeee--------------------ecC----CCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCC
Q psy2071 131 MDCQLGQEVGYSIR--------------------FED----CSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHE 186 (302)
Q Consensus 131 ~~~~~~~~v~~~~~--------------------~~~----~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~ 186 (302)
...++.+++.+... +.. ....++.+..||+||+||++||+||+.+|++|||||
T Consensus 98 ~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE--- 174 (258)
T PRK14241 98 PTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDE--- 174 (258)
T ss_pred CCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcC---
Confidence 12233333322110 000 011234567799999999999999999999999999
Q ss_pred CCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeee
Q psy2071 187 RTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMN 233 (302)
Q Consensus 187 p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~ 233 (302)
|++++|+.. ..+.+++....+ +.|||++||+++++.++||++++|+
T Consensus 175 Pt~~LD~~~~~~l~~~l~~~~~-~~tviivsH~~~~~~~~~d~i~~l~ 221 (258)
T PRK14241 175 PCSALDPISTLAIEDLINELKQ-DYTIVIVTHNMQQAARVSDQTAFFN 221 (258)
T ss_pred CCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHHHHHHhCCEEEEEe
Confidence 999999887 778888877654 5799999999999999999999996
No 228
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.95 E-value=3.3e-30 Score=254.00 Aligned_cols=169 Identities=20% Similarity=0.224 Sum_probs=127.4
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCch----------hhhH---HHH----HHHhh
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPR----------RVAA---MSV----AQRVS 128 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~----------~~~~---~~~----~~~~~ 128 (302)
++++|++.|++|++++|+|+||||||||+++|+|+++|++|.+.+.|.... .... ... ...+.
T Consensus 31 ~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ig~v~ 110 (623)
T PRK10261 31 AVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELSEQSAAQMRHVRGADMAMIF 110 (623)
T ss_pred EEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccccCCHHHHHHHhCCCEEEEE
Confidence 578999999999999999999999999999999999999999988764210 0000 000 01111
Q ss_pred h------hhccccccceeeeeee-------------------cCCC----CccccccccCHHHHHHHhccccCCCCCcEE
Q psy2071 129 E------EMDCQLGQEVGYSIRF-------------------EDCS----SPKTVLKYMTDGMLLREGMSDPMLENYQVI 179 (302)
Q Consensus 129 ~------~~~~~~~~~v~~~~~~-------------------~~~~----~~~~~~~~lS~G~~qr~~la~al~~~p~ll 179 (302)
+ ....++.+++.+..+. .... ..+..+..|||||+||++||+||+.+|++|
T Consensus 111 Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~LSgGq~QRv~iA~AL~~~P~lL 190 (623)
T PRK10261 111 QEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMALSCRPAVL 190 (623)
T ss_pred eCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCccCCHHHHHHHHHHHHHhCCCCEE
Confidence 1 1223555555432111 0111 124567789999999999999999999999
Q ss_pred EEcCCCCCCcchHHHH-HHHHHHHHHcC-CCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 180 LLDEAHERTLATDILM-GVLKEVIKQRA-DLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 180 iLDE~~~p~~~lD~~~-~~l~~ll~~~~-~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
|||| ||+++|+.. ..+.++++.+. +.|.|||++|||++.+.++||++++|+ .|+.
T Consensus 191 llDE---Pt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~-~G~i 247 (623)
T PRK10261 191 IADE---PTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMY-QGEA 247 (623)
T ss_pred EEeC---CCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEee-CCee
Confidence 9999 999999888 77888888765 448899999999999999999999998 5553
No 229
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.95 E-value=4.7e-30 Score=228.37 Aligned_cols=169 Identities=16% Similarity=0.176 Sum_probs=125.0
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhH------HHHHHHhhhh------hcc
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAA------MSVAQRVSEE------MDC 133 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~------~~~~~~~~~~------~~~ 133 (302)
+.+++++.|++|++++|+|+||||||||+++|+|+++|++|++.+.|........ .....++.+. ...
T Consensus 27 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~ 106 (268)
T PRK10419 27 VLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISAVNPRK 106 (268)
T ss_pred eEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChhHHHHHHhcEEEEEcChhhccCCCC
Confidence 5789999999999999999999999999999999999999999998865422110 0000011110 011
Q ss_pred ccccceeeee-------------------eecCC--CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchH
Q psy2071 134 QLGQEVGYSI-------------------RFEDC--SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATD 192 (302)
Q Consensus 134 ~~~~~v~~~~-------------------~~~~~--~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD 192 (302)
++.+++.+.. ..... ...++....||+||+||++||+||+.+|++||||| |++++|
T Consensus 107 t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~laral~~~p~lllLDE---Pt~~LD 183 (268)
T PRK10419 107 TVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDE---AVSNLD 183 (268)
T ss_pred CHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHHHHHHHhcCCCEEEEeC---CCcccC
Confidence 2222221100 00011 12245667799999999999999999999999999 999999
Q ss_pred HHH-HHHHHHHHHcCC-CcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 193 ILM-GVLKEVIKQRAD-LKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 193 ~~~-~~l~~ll~~~~~-~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
... ..+.+++....+ .+.|+|++||+.+.+..+||++++|+ .|+.
T Consensus 184 ~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~-~G~i 230 (268)
T PRK10419 184 LVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMD-NGQI 230 (268)
T ss_pred HHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEE-CCEE
Confidence 877 677787776543 37899999999999999999999998 6654
No 230
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.95 E-value=6.2e-30 Score=226.72 Aligned_cols=169 Identities=18% Similarity=0.150 Sum_probs=122.5
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCch---h---hhHHHHHHHhhhh---hccccc
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPR---R---VAAMSVAQRVSEE---MDCQLG 136 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~---~---~~~~~~~~~~~~~---~~~~~~ 136 (302)
+++++++.|++|++++|+|+||||||||+++|+|+++|++|.+.+.|.... . ....++...+... ......
T Consensus 39 il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~ 118 (264)
T PRK13546 39 ALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGEVSVIAISAGLSGQLTGIENIEFKMLCMGFKRK 118 (264)
T ss_pred EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEeEEecccCCCCCCcHHHHHHHHHHHcCCCHH
Confidence 468899999999999999999999999999999999999999988773110 0 0001111111100 000000
Q ss_pred ---cceeeeeee-cCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEE
Q psy2071 137 ---QEVGYSIRF-EDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVIKQRADLKLV 211 (302)
Q Consensus 137 ---~~v~~~~~~-~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ 211 (302)
..+...+.. ......+..+..||+||+||++||+|++.+|++||||| |++++|+.. ..+.+++....+.+.|
T Consensus 119 ~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDE---Pt~gLD~~~~~~l~~~L~~~~~~g~t 195 (264)
T PRK13546 119 EIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDE---ALSVGDQTFAQKCLDKIYEFKEQNKT 195 (264)
T ss_pred HHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeC---ccccCCHHHHHHHHHHHHHHHHCCCE
Confidence 000000111 11112345677899999999999999999999999999 999999876 6777777765556889
Q ss_pred EEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 212 IMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 212 ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
+|++||+.+.+..+||++++|+ .|+.
T Consensus 196 iIiisH~~~~i~~~~d~i~~l~-~G~i 221 (264)
T PRK13546 196 IFFVSHNLGQVRQFCTKIAWIE-GGKL 221 (264)
T ss_pred EEEEcCCHHHHHHHcCEEEEEE-CCEE
Confidence 9999999999999999999998 6654
No 231
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.95 E-value=3e-29 Score=217.06 Aligned_cols=167 Identities=13% Similarity=0.183 Sum_probs=124.2
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHH---hhh---hhccccccce
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQR---VSE---EMDCQLGQEV 139 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~---~~~---~~~~~~~~~v 139 (302)
+++++++.|++|++++|+|+||||||||+++|+|+++|++|++.+.|.............. +.+ .+..++.+++
T Consensus 19 ~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv~enl 98 (221)
T cd03244 19 VLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRISIIPQDPVLFSGTIRSNL 98 (221)
T ss_pred cccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhEEEECCCCccccchHHHHh
Confidence 5889999999999999999999999999999999999999999998865422111111111 111 1122344443
Q ss_pred eeeeeec-----------CC------------CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-
Q psy2071 140 GYSIRFE-----------DC------------SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM- 195 (302)
Q Consensus 140 ~~~~~~~-----------~~------------~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~- 195 (302)
.+..... .. .........||+||+||++||++|+.+|+++|||| |++++|+..
T Consensus 99 ~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDE---P~~~LD~~~~ 175 (221)
T cd03244 99 DPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDE---ATASVDPETD 175 (221)
T ss_pred CcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeC---ccccCCHHHH
Confidence 3211000 00 00123567799999999999999999999999999 999999887
Q ss_pred HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 196 GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 196 ~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
..+.+++++... +.|++++||+.+.+.. ||++++|+ .|+.
T Consensus 176 ~~l~~~l~~~~~-~~tii~~sh~~~~~~~-~d~i~~l~-~g~~ 215 (221)
T cd03244 176 ALIQKTIREAFK-DCTVLTIAHRLDTIID-SDRILVLD-KGRV 215 (221)
T ss_pred HHHHHHHHHhcC-CCEEEEEeCCHHHHhh-CCEEEEEE-CCeE
Confidence 778888887654 5799999999999975 99999998 6653
No 232
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.95 E-value=1.4e-29 Score=216.54 Aligned_cols=159 Identities=16% Similarity=0.181 Sum_probs=116.6
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhhccccccceeeeeee
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRF 145 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 145 (302)
+.+++++.|++|++++|+||||||||||+++|+|+.+|++|++.+.|. ++.......+ +..++.+++.+...+
T Consensus 20 il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g~----i~~~~q~~~l---~~~t~~enl~~~~~~ 92 (204)
T cd03250 20 TLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGS----IAYVSQEPWI---QNGTIRENILFGKPF 92 (204)
T ss_pred eeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcCE----EEEEecCchh---ccCcHHHHhccCCCc
Confidence 578999999999999999999999999999999999999999988761 1110000000 011222222211000
Q ss_pred ------------------cC-----CCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHH-
Q psy2071 146 ------------------ED-----CSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKE- 200 (302)
Q Consensus 146 ------------------~~-----~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~- 200 (302)
.. ..........||+||+||++||++|+.+|+++|||| |++++|+.. ..+.+
T Consensus 93 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDE---P~~~LD~~~~~~l~~~ 169 (204)
T cd03250 93 DEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDD---PLSAVDAHVGRHIFEN 169 (204)
T ss_pred CHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeC---ccccCCHHHHHHHHHH
Confidence 00 001123457799999999999999999999999999 999999877 55655
Q ss_pred HHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecC
Q psy2071 201 VIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPG 236 (302)
Q Consensus 201 ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g 236 (302)
++....+.+.|||++||+.+.+.. ||++++|+ .|
T Consensus 170 ll~~~~~~~~tvi~~sh~~~~~~~-~d~i~~l~-~G 203 (204)
T cd03250 170 CILGLLLNNKTRILVTHQLQLLPH-ADQIVVLD-NG 203 (204)
T ss_pred HHHHhccCCCEEEEEeCCHHHHhh-CCEEEEEe-CC
Confidence 566554458899999999999987 99999887 44
No 233
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=1.3e-29 Score=244.70 Aligned_cols=170 Identities=16% Similarity=0.212 Sum_probs=128.2
Q ss_pred HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhccc-ccCCCEEEeecCchhhhH-HHH---HHHhhh-------hhc
Q psy2071 65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYS-KSVGAKAVACTQPRRVAA-MSV---AQRVSE-------EMD 132 (302)
Q Consensus 65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~-~~~G~~~i~~~~~~~~~~-~~~---~~~~~~-------~~~ 132 (302)
.+++++++.|++|++++|+|+||||||||+++|+|+++ |++|.+.+.|.+...... ... ..++.+ ...
T Consensus 276 ~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~ 355 (506)
T PRK13549 276 KRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPV 355 (506)
T ss_pred ccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHCCCEEeCcchhhCCCcCC
Confidence 36789999999999999999999999999999999998 599999998864321100 000 011111 112
Q ss_pred cccccceeeee------------------------eecCC-CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCC
Q psy2071 133 CQLGQEVGYSI------------------------RFEDC-SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHER 187 (302)
Q Consensus 133 ~~~~~~v~~~~------------------------~~~~~-~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p 187 (302)
.++.+++.+.. ++... ...++.+..|||||+||++||+||+.+|++||||| |
T Consensus 356 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~lA~al~~~p~lllLDE---P 432 (506)
T PRK13549 356 MGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKAVLAKCLLLNPKILILDE---P 432 (506)
T ss_pred CCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHHHHHHHHhhCCCEEEEcC---C
Confidence 33344332210 00000 12345677899999999999999999999999999 9
Q ss_pred CcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 188 TLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 188 ~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
|+++|+.. ..+.+++....+.|.|||++|||++++.++||++++|+ .|+.
T Consensus 433 t~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~v~~l~-~G~i 483 (506)
T PRK13549 433 TRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMH-EGKL 483 (506)
T ss_pred CCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEE-CCEE
Confidence 99999887 77888888766668999999999999999999999998 6654
No 234
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=4.3e-30 Score=226.75 Aligned_cols=169 Identities=17% Similarity=0.141 Sum_probs=124.1
Q ss_pred HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhccc--c---cCCCEEEeecCchhh-----hHHH----HHHHhhhh
Q psy2071 65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYS--K---SVGAKAVACTQPRRV-----AAMS----VAQRVSEE 130 (302)
Q Consensus 65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~--~---~~G~~~i~~~~~~~~-----~~~~----~~~~~~~~ 130 (302)
.+++++++.|++|++++|+|+||||||||+++|+|+++ | ++|++.+.|.+.... .... +.+.....
T Consensus 18 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~ 97 (252)
T PRK14256 18 HAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKPNPF 97 (252)
T ss_pred eEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHhhccEEEEecCCCCC
Confidence 35789999999999999999999999999999999986 4 589999988654211 0000 01111111
Q ss_pred hccccccceeeeeee-------------------cCC-----CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCC
Q psy2071 131 MDCQLGQEVGYSIRF-------------------EDC-----SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHE 186 (302)
Q Consensus 131 ~~~~~~~~v~~~~~~-------------------~~~-----~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~ 186 (302)
...++.+++.+.... ... ...++.+..||+||+||++||+||+.+|++|||||
T Consensus 98 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDE--- 174 (252)
T PRK14256 98 PAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTIAVKPEVILMDE--- 174 (252)
T ss_pred CcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHHHHHhcCCCEEEEcC---
Confidence 123334433221100 000 01124466799999999999999999999999999
Q ss_pred CCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 187 RTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 187 p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
|++++|+.. ..+.+++.+..+ +.|||++||+++++.++||++++|+ .|+.
T Consensus 175 P~~gLD~~~~~~l~~~l~~~~~-~~tiiivsH~~~~~~~~~d~i~~l~-~G~i 225 (252)
T PRK14256 175 PASALDPISTLKIEELIEELKE-KYTIIIVTHNMQQAARVSDYTAFFY-MGDL 225 (252)
T ss_pred CcccCCHHHHHHHHHHHHHHHh-CCcEEEEECCHHHHHhhCCEEEEEE-CCEE
Confidence 999999887 778888877655 5799999999999999999999998 6653
No 235
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.95 E-value=7.1e-30 Score=246.26 Aligned_cols=169 Identities=11% Similarity=0.135 Sum_probs=127.5
Q ss_pred HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccc--cCCCEEEeecCchhhhH--------HHHHHHhhhhhccc
Q psy2071 65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSK--SVGAKAVACTQPRRVAA--------MSVAQRVSEEMDCQ 134 (302)
Q Consensus 65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~--~~G~~~i~~~~~~~~~~--------~~~~~~~~~~~~~~ 134 (302)
.+++++++.+++|++++|+||||||||||+++|+|+++| ++|.+.+.|.+...... ..+.+........+
T Consensus 15 ~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 94 (500)
T TIGR02633 15 KALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGIVIIHQELTLVPELS 94 (500)
T ss_pred EeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCEEEEeeccccCCCCc
Confidence 357899999999999999999999999999999999986 79999998865322110 01111111112234
Q ss_pred cccceeeeeee----------------------cCCC-C-ccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcc
Q psy2071 135 LGQEVGYSIRF----------------------EDCS-S-PKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLA 190 (302)
Q Consensus 135 ~~~~v~~~~~~----------------------~~~~-~-~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~ 190 (302)
+.+++.+.... .... . .++.+..|||||+||++||+||+.+|++||||| ||++
T Consensus 95 v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~~p~lllLDE---Pt~~ 171 (500)
T TIGR02633 95 VAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQARLLILDE---PSSS 171 (500)
T ss_pred HHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHhhCCCEEEEeC---CCCC
Confidence 44444322110 0010 1 134567899999999999999999999999999 9999
Q ss_pred hHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCc
Q psy2071 191 TDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGR 237 (302)
Q Consensus 191 lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~ 237 (302)
+|+.. ..+.+++.+..+.|.|||++|||++++..+||++++|+ .|+
T Consensus 172 LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~-~G~ 218 (500)
T TIGR02633 172 LTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIR-DGQ 218 (500)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEe-CCe
Confidence 99887 78888888766668899999999999999999999998 554
No 236
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.95 E-value=6.5e-30 Score=227.39 Aligned_cols=168 Identities=14% Similarity=0.143 Sum_probs=125.2
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccc-----cCCCEEEeecCchhh--hHHHHH---HHhhhh---hc
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSK-----SVGAKAVACTQPRRV--AAMSVA---QRVSEE---MD 132 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~-----~~G~~~i~~~~~~~~--~~~~~~---~~~~~~---~~ 132 (302)
+++++++.|++|++++|+|+||||||||+++|+|+++| ++|++.+.|.+.... ...... ..+.+. ..
T Consensus 34 il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~ 113 (267)
T PRK14235 34 ALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVELRARVGMVFQKPNPFP 113 (267)
T ss_pred EEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchHHHhhceEEEecCCCCCC
Confidence 57889999999999999999999999999999999874 899999988654210 000111 111111 11
Q ss_pred cccccceeeeeee--------------------cCCC-----CccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCC
Q psy2071 133 CQLGQEVGYSIRF--------------------EDCS-----SPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHER 187 (302)
Q Consensus 133 ~~~~~~v~~~~~~--------------------~~~~-----~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p 187 (302)
.++.+++.+.... .... ..++....||+||+||++||+||+.+|++||||| |
T Consensus 114 ~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDE---P 190 (267)
T PRK14235 114 KSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDE---P 190 (267)
T ss_pred CcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC---C
Confidence 2444444321100 0000 1134567799999999999999999999999999 9
Q ss_pred CcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 188 TLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 188 ~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
++++|+.. ..+.+++....+ +.|||++||+++.+..+||++++|+ .|+.
T Consensus 191 t~~LD~~~~~~l~~~L~~l~~-~~tiiivtH~~~~~~~~~d~v~~l~-~G~i 240 (267)
T PRK14235 191 CSALDPIATAKVEELIDELRQ-NYTIVIVTHSMQQAARVSQRTAFFH-LGNL 240 (267)
T ss_pred CcCCCHHHHHHHHHHHHHHhc-CCeEEEEEcCHHHHHhhCCEEEEEE-CCEE
Confidence 99999887 778888887655 5799999999999999999999998 6653
No 237
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=5.9e-30 Score=225.45 Aligned_cols=169 Identities=17% Similarity=0.170 Sum_probs=124.6
Q ss_pred HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccc-----cCCCEEEeecCchh-h---hHHHHHHHhhhh---hc
Q psy2071 65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSK-----SVGAKAVACTQPRR-V---AAMSVAQRVSEE---MD 132 (302)
Q Consensus 65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~-----~~G~~~i~~~~~~~-~---~~~~~~~~~~~~---~~ 132 (302)
.+++++++.|++|++++|+|+||||||||+++|+|+++| ++|++.+.|..... . .......++.+. +.
T Consensus 17 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~ 96 (249)
T PRK14253 17 QALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLRIKVGMVFQKPNPFP 96 (249)
T ss_pred eeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHHHhheeEEecCCCcCc
Confidence 367899999999999999999999999999999999886 58999998854311 0 000001111111 11
Q ss_pred cccccceeeeeeec-------------------CC-----CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCC
Q psy2071 133 CQLGQEVGYSIRFE-------------------DC-----SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERT 188 (302)
Q Consensus 133 ~~~~~~v~~~~~~~-------------------~~-----~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~ 188 (302)
.++.+++.+..... .. ...++....||+||+||++||+||+.+|++||||| |+
T Consensus 97 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE---P~ 173 (249)
T PRK14253 97 MSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDE---PT 173 (249)
T ss_pred ccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeC---CC
Confidence 23333333211000 00 01234456799999999999999999999999999 99
Q ss_pred cchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 189 LATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 189 ~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
+++|+.. ..+.+++.+..+ +.||+++||+.+.+..+||++++|+ .|+.
T Consensus 174 ~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~~~~~~d~i~~l~-~G~i 222 (249)
T PRK14253 174 SALDPIATHKIEELMEELKK-NYTIVIVTHSMQQARRISDRTAFFL-MGEL 222 (249)
T ss_pred ccCCHHHHHHHHHHHHHHhc-CCeEEEEecCHHHHHHhCCEEEEEE-CCEE
Confidence 9999887 778888887655 4799999999999999999999998 6664
No 238
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=5.6e-30 Score=233.52 Aligned_cols=176 Identities=18% Similarity=0.232 Sum_probs=130.3
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhccc-----ccCCCEEEeecCchh--hhHHHHHH---Hhhh---hhc
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYS-----KSVGAKAVACTQPRR--VAAMSVAQ---RVSE---EMD 132 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~-----~~~G~~~i~~~~~~~--~~~~~~~~---~~~~---~~~ 132 (302)
+++++++.|++|++++|+|+||||||||+++|+|+.. |++|.+.++|.+... ........ .+.+ .+.
T Consensus 97 ~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~~~~ 176 (329)
T PRK14257 97 VLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPFE 176 (329)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCCccCC
Confidence 6899999999999999999999999999999999986 568999998876531 11011111 1111 122
Q ss_pred cccccceeeeeeec-----------------C--C-----CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCC
Q psy2071 133 CQLGQEVGYSIRFE-----------------D--C-----SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERT 188 (302)
Q Consensus 133 ~~~~~~v~~~~~~~-----------------~--~-----~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~ 188 (302)
.++.+++.+...+. . . ...+.....|||||+||++||||++.+|++||||| |+
T Consensus 177 ~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~LARAl~~~p~IlLLDE---Pt 253 (329)
T PRK14257 177 MSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDE---PT 253 (329)
T ss_pred CcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEeC---Cc
Confidence 34445554322110 0 0 01234556799999999999999999999999999 99
Q ss_pred cchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC----Cccceeec
Q psy2071 189 LATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT----HPVEIFYT 246 (302)
Q Consensus 189 ~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~----~~~~~~~~ 246 (302)
+++|+.. ..+.+++....+ +.|+|++||+++.+.++||++++|+ .|+. .|.+++..
T Consensus 254 s~LD~~~~~~i~~~i~~l~~-~~Tii~iTH~l~~i~~~~Driivl~-~G~i~e~g~~~~l~~~ 314 (329)
T PRK14257 254 SALDPIATAKIEELILELKK-KYSIIIVTHSMAQAQRISDETVFFY-QGWIEEAGETKTIFIH 314 (329)
T ss_pred ccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEE-CCEEEEeCCHHHHhcC
Confidence 9999877 778888887655 5899999999999999999999998 6653 44444433
No 239
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.95 E-value=2e-30 Score=230.70 Aligned_cols=170 Identities=15% Similarity=0.150 Sum_probs=126.1
Q ss_pred hHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhccc-----ccCCCEEEeecCchhh--hHHHHH---HHhhh---h
Q psy2071 64 FEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYS-----KSVGAKAVACTQPRRV--AAMSVA---QRVSE---E 130 (302)
Q Consensus 64 ~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~-----~~~G~~~i~~~~~~~~--~~~~~~---~~~~~---~ 130 (302)
..+++++++.|.+|++++|+|+||||||||+++|+|+++ |++|++.++|.+.... ...... ..+.+ .
T Consensus 33 ~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~ 112 (267)
T PRK14237 33 KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEMRKHIGMVFQRPNP 112 (267)
T ss_pred eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChHHHhcceEEEecCCcc
Confidence 346789999999999999999999999999999999986 5799999988654210 000000 11111 1
Q ss_pred hccccccceeeeeeec-------------------CC-----CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCC
Q psy2071 131 MDCQLGQEVGYSIRFE-------------------DC-----SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHE 186 (302)
Q Consensus 131 ~~~~~~~~v~~~~~~~-------------------~~-----~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~ 186 (302)
+..++.+++.+..... .. ...+.....||+||+||++||+|++.+|++|||||
T Consensus 113 ~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDE--- 189 (267)
T PRK14237 113 FAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCIARAIAVKPDILLMDE--- 189 (267)
T ss_pred ccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC---
Confidence 1124444443321100 00 01234567799999999999999999999999999
Q ss_pred CCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 187 RTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 187 p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
|++++|+.. ..+.+++.+..+ +.+||++||+.+++.++||++++|+ .|+.
T Consensus 190 Pt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~~~~~~~d~i~~l~-~G~i 240 (267)
T PRK14237 190 PASALDPISTMQLEETMFELKK-NYTIIIVTHNMQQAARASDYTAFFY-LGDL 240 (267)
T ss_pred CcccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHHHHHHhcCEEEEEE-CCEE
Confidence 999999877 778888877654 6899999999999999999999998 6653
No 240
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=9e-30 Score=224.57 Aligned_cols=168 Identities=16% Similarity=0.139 Sum_probs=124.5
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccc-----cCCCEEEeecCchhh-----hHHHHHHHhhh---hhc
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSK-----SVGAKAVACTQPRRV-----AAMSVAQRVSE---EMD 132 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~-----~~G~~~i~~~~~~~~-----~~~~~~~~~~~---~~~ 132 (302)
+++++++.|++|++++|+|+||||||||+++|+|+.+| ++|++.+.|.+.... ........+.+ ...
T Consensus 19 ~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~ 98 (251)
T PRK14270 19 ALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPNPFP 98 (251)
T ss_pred eeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHHHHhheEEEecCCCcCC
Confidence 57899999999999999999999999999999999875 789999988654210 00000011111 111
Q ss_pred cccccceeeeeeec-------------------CC-----CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCC
Q psy2071 133 CQLGQEVGYSIRFE-------------------DC-----SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERT 188 (302)
Q Consensus 133 ~~~~~~v~~~~~~~-------------------~~-----~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~ 188 (302)
.++.+++.+..... .. ...+.....||+||+||++||++++.+|++||||| |+
T Consensus 99 ~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE---P~ 175 (251)
T PRK14270 99 MSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDE---PT 175 (251)
T ss_pred CcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC---Cc
Confidence 23334433211000 00 01234567899999999999999999999999999 99
Q ss_pred cchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 189 LATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 189 ~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
+++|+.. ..+.+++....+ +.|++++||+.+.+.++||++++|+ .|+.
T Consensus 176 ~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~~~~~~~d~v~~l~-~G~i 224 (251)
T PRK14270 176 SALDPISTLKIEDLMVELKK-EYTIVIVTHNMQQASRVSDYTAFFL-MGDL 224 (251)
T ss_pred ccCCHHHHHHHHHHHHHHHh-CCeEEEEEcCHHHHHHhcCEEEEEE-CCeE
Confidence 9999887 778888876655 4799999999999999999999998 6664
No 241
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=5.6e-30 Score=225.85 Aligned_cols=169 Identities=15% Similarity=0.159 Sum_probs=124.5
Q ss_pred HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhccc-----ccCCCEEEeecCchh--hh---HHHHHHHhhh---hh
Q psy2071 65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYS-----KSVGAKAVACTQPRR--VA---AMSVAQRVSE---EM 131 (302)
Q Consensus 65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~-----~~~G~~~i~~~~~~~--~~---~~~~~~~~~~---~~ 131 (302)
.+++++++.|++|++++|+|+||||||||+++|+|+++ |++|++.++|.+... .. .......+.+ ..
T Consensus 18 ~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 97 (251)
T PRK14251 18 EALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQPTPF 97 (251)
T ss_pred eeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHHhhccEEEEecCCccC
Confidence 35788999999999999999999999999999999986 478999998865321 00 0000001111 11
Q ss_pred ccccccceeeeee-------------------ecCC-----CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCC
Q psy2071 132 DCQLGQEVGYSIR-------------------FEDC-----SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHER 187 (302)
Q Consensus 132 ~~~~~~~v~~~~~-------------------~~~~-----~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p 187 (302)
..++.+++.+... .... ...+.....||+||+||++||+||+.+|++||||| |
T Consensus 98 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~laral~~~p~llllDE---P 174 (251)
T PRK14251 98 PFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDE---P 174 (251)
T ss_pred CCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHHHHHhcCCCEEEecC---C
Confidence 1233333322110 0000 11234567799999999999999999999999999 9
Q ss_pred CcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 188 TLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 188 ~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
++++|+.. ..+.+++.+..+ +.|||++||+++.+.++||++++|+ .|+.
T Consensus 175 ~~~LD~~~~~~l~~~l~~~~~-~~tiiiisH~~~~~~~~~d~i~~l~-~G~i 224 (251)
T PRK14251 175 TSALDPISSSEIEETLMELKH-QYTFIMVTHNLQQAGRISDQTAFLM-NGDL 224 (251)
T ss_pred CccCCHHHHHHHHHHHHHHHc-CCeEEEEECCHHHHHhhcCEEEEEE-CCEE
Confidence 99999887 778888876644 5899999999999999999999998 6664
No 242
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.95 E-value=4.7e-30 Score=228.76 Aligned_cols=169 Identities=16% Similarity=0.147 Sum_probs=125.1
Q ss_pred HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhccc-----ccCCCEEEeecCchh--hhHHHHH---HHhhhh---h
Q psy2071 65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYS-----KSVGAKAVACTQPRR--VAAMSVA---QRVSEE---M 131 (302)
Q Consensus 65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~-----~~~G~~~i~~~~~~~--~~~~~~~---~~~~~~---~ 131 (302)
.+++++++.|++|++++|+|+||||||||+++|+|+++ |++|++.++|.+... ....... .++.+. +
T Consensus 38 ~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~ 117 (271)
T PRK14238 38 HALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEELRTNVGMVFQKPNPF 117 (271)
T ss_pred ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHHHHhhhEEEEecCCccc
Confidence 36789999999999999999999999999999999987 689999998864321 0000000 011111 1
Q ss_pred ccccccceeeeeeecC------------------------CCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCC
Q psy2071 132 DCQLGQEVGYSIRFED------------------------CSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHER 187 (302)
Q Consensus 132 ~~~~~~~v~~~~~~~~------------------------~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p 187 (302)
..++.+++.+...... ....+.....||+||+||++||++|+.+|++||||| |
T Consensus 118 ~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~laraL~~~p~lllLDE---P 194 (271)
T PRK14238 118 PKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDE---P 194 (271)
T ss_pred cccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeC---C
Confidence 1233344332110000 001234566799999999999999999999999999 9
Q ss_pred CcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 188 TLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 188 ~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
++++|+.. ..+.+++....+ +.|+|++||+++++..+||++++|+ .|+.
T Consensus 195 t~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~~i~~~~d~i~~l~-~G~i 244 (271)
T PRK14238 195 TSALDPISTLKVEELVQELKK-DYSIIIVTHNMQQAARISDKTAFFL-NGYV 244 (271)
T ss_pred CCcCCHHHHHHHHHHHHHHHc-CCEEEEEEcCHHHHHHhCCEEEEEE-CCEE
Confidence 99999887 778888877655 6899999999999999999999998 6654
No 243
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.95 E-value=9.6e-30 Score=224.47 Aligned_cols=168 Identities=17% Similarity=0.163 Sum_probs=123.6
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcc--cc---cCCCEEEeecCchhh-----hHHHHHHHhhh---hhc
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEY--SK---SVGAKAVACTQPRRV-----AAMSVAQRVSE---EMD 132 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~--~~---~~G~~~i~~~~~~~~-----~~~~~~~~~~~---~~~ 132 (302)
+.+++++.|++|++++|+|+||||||||+++|+|+. .| ++|++.+.|...... ........+.+ .+.
T Consensus 20 ~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~ 99 (252)
T PRK14239 20 ALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPNPFP 99 (252)
T ss_pred eeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHhhhhcEEEEecCCccCc
Confidence 578999999999999999999999999999999985 36 489999988653210 00000011111 111
Q ss_pred cccccceeeeeeec-------------------CC-----CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCC
Q psy2071 133 CQLGQEVGYSIRFE-------------------DC-----SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERT 188 (302)
Q Consensus 133 ~~~~~~v~~~~~~~-------------------~~-----~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~ 188 (302)
.++.+++.+..... .. ...++.+..||+||+||++||+||+.+|++||||| |+
T Consensus 100 ~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE---Pt 176 (252)
T PRK14239 100 MSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVLATSPKIILLDE---PT 176 (252)
T ss_pred CcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcC---Cc
Confidence 34444443211000 00 01234567799999999999999999999999999 99
Q ss_pred cchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 189 LATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 189 ~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
+++|+.. ..+.+++....+ +.|||++||+++++..+||++++|+ .|+.
T Consensus 177 ~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~~~~~~~d~i~~l~-~G~i 225 (252)
T PRK14239 177 SALDPISAGKIEETLLGLKD-DYTMLLVTRSMQQASRISDRTGFFL-DGDL 225 (252)
T ss_pred cccCHHHHHHHHHHHHHHhh-CCeEEEEECCHHHHHHhCCEEEEEE-CCEE
Confidence 9999887 778888887654 5799999999999999999999998 6654
No 244
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.95 E-value=2e-29 Score=243.04 Aligned_cols=170 Identities=17% Similarity=0.215 Sum_probs=127.3
Q ss_pred HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccc-cCCCEEEeecCchhhhH-HHH---HHHhhhh-------hc
Q psy2071 65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSK-SVGAKAVACTQPRRVAA-MSV---AQRVSEE-------MD 132 (302)
Q Consensus 65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~-~~G~~~i~~~~~~~~~~-~~~---~~~~~~~-------~~ 132 (302)
.+++++++.|++|++++|+|+||||||||+++|+|+++| ++|++.+.|........ ... ..++.+. ..
T Consensus 274 ~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~~~ 353 (500)
T TIGR02633 274 KRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPI 353 (500)
T ss_pred cccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhCCCEEcCcchhhCCcCCC
Confidence 368899999999999999999999999999999999985 89999998854321000 000 0111111 11
Q ss_pred cccccceeeee------------------------eecCC-CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCC
Q psy2071 133 CQLGQEVGYSI------------------------RFEDC-SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHER 187 (302)
Q Consensus 133 ~~~~~~v~~~~------------------------~~~~~-~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p 187 (302)
.++.+++.+.. ++... ...++.+..|||||+||++||++|+.+|++||||| |
T Consensus 354 ~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDE---P 430 (500)
T TIGR02633 354 LGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDE---P 430 (500)
T ss_pred CCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHHHHHHHhhCCCEEEEcC---C
Confidence 23333332210 01110 12345677899999999999999999999999999 9
Q ss_pred CcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 188 TLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 188 ~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
|+++|+.. ..+.+++....+.+.|||++|||++++.++||++++|+ .|+.
T Consensus 431 t~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~v~~l~-~G~i 481 (500)
T TIGR02633 431 TRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIG-EGKL 481 (500)
T ss_pred CCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEE-CCEE
Confidence 99999887 77888887766668899999999999999999999998 6653
No 245
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=1.1e-29 Score=223.98 Aligned_cols=168 Identities=15% Similarity=0.108 Sum_probs=124.8
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhccccc-----CCCEEEeecCchhhh--H---HHHHHHhhhh---hc
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKS-----VGAKAVACTQPRRVA--A---MSVAQRVSEE---MD 132 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~-----~G~~~i~~~~~~~~~--~---~~~~~~~~~~---~~ 132 (302)
+++++++.|++|++++|+|+||||||||+++|+|+++|+ .|.+.+.|.+..... . .....++.+. ..
T Consensus 19 il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~ 98 (251)
T PRK14249 19 VLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNPFP 98 (251)
T ss_pred EecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHHhhceEEEEecCCccCc
Confidence 578999999999999999999999999999999999987 599998876542110 0 0000111111 11
Q ss_pred cccccceeeeeeec-------------------CC-----CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCC
Q psy2071 133 CQLGQEVGYSIRFE-------------------DC-----SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERT 188 (302)
Q Consensus 133 ~~~~~~v~~~~~~~-------------------~~-----~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~ 188 (302)
.++.+++.+..... .. ...++....||+||+||++||+||+.+|++||||| |+
T Consensus 99 ~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDE---Pt 175 (251)
T PRK14249 99 KSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDE---PC 175 (251)
T ss_pred CcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC---CC
Confidence 23333333221100 00 01234566799999999999999999999999999 99
Q ss_pred cchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 189 LATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 189 ~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
+++|+.. ..+.+++.... .+.|||++||+++.+..+||++++|+ .|+.
T Consensus 176 ~~LD~~~~~~l~~~l~~~~-~~~tilivsh~~~~~~~~~d~i~~l~-~G~i 224 (251)
T PRK14249 176 SALDPVSTMRIEELMQELK-QNYTIAIVTHNMQQAARASDWTGFLL-TGDL 224 (251)
T ss_pred ccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHhhCCEEEEEe-CCeE
Confidence 9999887 77888888764 37899999999999999999999998 6654
No 246
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=7.7e-30 Score=228.98 Aligned_cols=169 Identities=15% Similarity=0.141 Sum_probs=124.4
Q ss_pred HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhccc-----ccCCCEEEeecCchhh-----hHHHHHHHhhhh---h
Q psy2071 65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYS-----KSVGAKAVACTQPRRV-----AAMSVAQRVSEE---M 131 (302)
Q Consensus 65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~-----~~~G~~~i~~~~~~~~-----~~~~~~~~~~~~---~ 131 (302)
.+++++++.|++|++++|+|+||||||||+++|+|+.. |++|.+.++|...... .......++.+. .
T Consensus 53 ~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~ 132 (286)
T PRK14275 53 EAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQKPNPF 132 (286)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccchHHhhhcEEEECCCCCCC
Confidence 36789999999999999999999999999999999864 4899999988643210 000000111111 1
Q ss_pred ccccccceeeeeee-------------------cC-----CCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCC
Q psy2071 132 DCQLGQEVGYSIRF-------------------ED-----CSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHER 187 (302)
Q Consensus 132 ~~~~~~~v~~~~~~-------------------~~-----~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p 187 (302)
..++.+++.+.... .. ....++.+..||+||+||++||+||+.+|++||||| |
T Consensus 133 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDE---P 209 (286)
T PRK14275 133 PKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVARTLAVEPEILLLDE---P 209 (286)
T ss_pred ccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC---C
Confidence 11333333321100 00 011244567899999999999999999999999999 9
Q ss_pred CcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 188 TLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 188 ~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
++++|+.. ..+.++++.... +.+||++||+.+++..+||++++|+ .|+.
T Consensus 210 t~gLD~~~~~~l~~~L~~~~~-~~tvIivsH~~~~~~~~~d~i~~L~-~G~i 259 (286)
T PRK14275 210 TSALDPKATAKIEDLIQELRG-SYTIMIVTHNMQQASRVSDYTMFFY-EGVL 259 (286)
T ss_pred CccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHHHHHHhCCEEEEEE-CCEE
Confidence 99999887 778888877654 5799999999999999999999998 6654
No 247
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.95 E-value=6.5e-30 Score=225.56 Aligned_cols=170 Identities=15% Similarity=0.093 Sum_probs=122.3
Q ss_pred HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhc--ccccCCCEEEeecCchhhhHH--------HHHHHhhhhhccc
Q psy2071 65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVE--YSKSVGAKAVACTQPRRVAAM--------SVAQRVSEEMDCQ 134 (302)
Q Consensus 65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~--~~~~~G~~~i~~~~~~~~~~~--------~~~~~~~~~~~~~ 134 (302)
.+++++++.|++|++++|+|+||||||||+++|+|+ ++|++|++.+.|.+....... .+.+........+
T Consensus 21 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~ 100 (252)
T CHL00131 21 EILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHLGIFLAFQYPIEIPGVS 100 (252)
T ss_pred EeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhheeeEEEEecccccccccc
Confidence 368899999999999999999999999999999998 578999999987653221100 0001000000011
Q ss_pred cccceee-------------------------eeeecCCC--Ccccccc-ccCHHHHHHHhccccCCCCCcEEEEcCCCC
Q psy2071 135 LGQEVGY-------------------------SIRFEDCS--SPKTVLK-YMTDGMLLREGMSDPMLENYQVILLDEAHE 186 (302)
Q Consensus 135 ~~~~v~~-------------------------~~~~~~~~--~~~~~~~-~lS~G~~qr~~la~al~~~p~lliLDE~~~ 186 (302)
..+++.+ .+...... ..++.+. .||+||+||++||+||+.+|++|||||
T Consensus 101 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDE--- 177 (252)
T CHL00131 101 NADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQMALLDSELAILDE--- 177 (252)
T ss_pred HHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHHHHHHHHHHcCCCEEEEcC---
Confidence 1111100 00000111 1234444 499999999999999999999999999
Q ss_pred CCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhh-ccCCCeeeecCcC
Q psy2071 187 RTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQY-FDNAPLMNVPGRT 238 (302)
Q Consensus 187 p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~-~d~~~~l~i~g~~ 238 (302)
|++++|+.. ..+.+++....+.+.|||++||+++.+..+ ||++++|+ .|+.
T Consensus 178 Pt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l~-~G~i 230 (252)
T CHL00131 178 TDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQ-NGKI 230 (252)
T ss_pred CcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEEEEEe-CCEE
Confidence 999999887 778888877655588999999999999887 89999998 6654
No 248
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.95 E-value=2e-29 Score=243.14 Aligned_cols=169 Identities=15% Similarity=0.191 Sum_probs=128.4
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhH----HHHHHHhhhh-------hccc
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAA----MSVAQRVSEE-------MDCQ 134 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~----~~~~~~~~~~-------~~~~ 134 (302)
+++++++.|.+|++++|+||||||||||+++|+|+++|++|++.+.|........ .....++.+. ...+
T Consensus 267 ~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~~t 346 (501)
T PRK10762 267 GVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGMS 346 (501)
T ss_pred CcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCCCc
Confidence 4789999999999999999999999999999999999999999998854321100 0000111111 1223
Q ss_pred cccceeeee-------------------------eecC-CCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCC
Q psy2071 135 LGQEVGYSI-------------------------RFED-CSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERT 188 (302)
Q Consensus 135 ~~~~v~~~~-------------------------~~~~-~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~ 188 (302)
+.+++.+.. .+.. ....++.+..|||||+||++||+||+.+|++||||| ||
T Consensus 347 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA~al~~~p~lllLDE---Pt 423 (501)
T PRK10762 347 VKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDE---PT 423 (501)
T ss_pred HHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHHHHHHHhhCCCEEEEcC---CC
Confidence 333332210 0011 012356677899999999999999999999999999 99
Q ss_pred cchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 189 LATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 189 ~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
+++|+.. ..+.++++...+.|.|||++|||++++.++||++++|+ .|+.
T Consensus 424 ~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d~v~~l~-~G~i 473 (501)
T PRK10762 424 RGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMH-EGRI 473 (501)
T ss_pred CCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEE-CCEE
Confidence 9999887 78888888766568899999999999999999999998 6653
No 249
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.95 E-value=5.2e-29 Score=219.66 Aligned_cols=176 Identities=15% Similarity=0.151 Sum_probs=123.8
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEE-----------EeecCchhhhHHHH---------HH
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKA-----------VACTQPRRVAAMSV---------AQ 125 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~-----------i~~~~~~~~~~~~~---------~~ 125 (302)
++++++ .+++|++++|+||||||||||+++|+|+++|++|++. +.|........... .+
T Consensus 16 ~l~~i~-~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~ 94 (255)
T cd03236 16 KLHRLP-VPREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKLLEGDVKVIVKPQ 94 (255)
T ss_pred hhhcCC-CCCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhHHhhhcccceeeecc
Confidence 577888 4999999999999999999999999999999999985 55554322110000 01
Q ss_pred Hhhhhhccccccceeeee--------------eecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcch
Q psy2071 126 RVSEEMDCQLGQEVGYSI--------------RFEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLAT 191 (302)
Q Consensus 126 ~~~~~~~~~~~~~v~~~~--------------~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~l 191 (302)
.+.... .++..++...+ .+......+..+..||+||+||+++|++++.+|+++|||| |++++
T Consensus 95 ~~~~~~-~~~~~~i~~~l~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDE---Pts~L 170 (255)
T cd03236 95 YVDLIP-KAVKGKVGELLKKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDADFYFFDE---PSSYL 170 (255)
T ss_pred hhccCc-hHHHHHHHHHhchhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEEC---CCCCC
Confidence 111100 01111111100 0111112345667899999999999999999999999999 99999
Q ss_pred HHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcCCccceeecCC
Q psy2071 192 DILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRTHPVEIFYTPE 248 (302)
Q Consensus 192 D~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~~~~~~~~~~~ 248 (302)
|+.. ..+.++++...+.+.+|+++||+++.+..+||++.+|+ |+.-...++-.|.
T Consensus 171 D~~~~~~l~~~l~~l~~~~~tIIiiSHd~~~~~~~ad~i~~l~--~~~~~~~~~~~~~ 226 (255)
T cd03236 171 DIKQRLNAARLIRELAEDDNYVLVVEHDLAVLDYLSDYIHCLY--GEPGAYGVVTLPK 226 (255)
T ss_pred CHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEC--CCCCcceeeecCc
Confidence 9887 66778877665557899999999999999999999986 4433334555443
No 250
>KOG0058|consensus
Probab=99.95 E-value=2.9e-29 Score=239.76 Aligned_cols=170 Identities=17% Similarity=0.254 Sum_probs=138.9
Q ss_pred hhHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHh---hhh---hccccc
Q psy2071 63 VFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRV---SEE---MDCQLG 136 (302)
Q Consensus 63 ~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~---~~~---~~~~~~ 136 (302)
...+++|++++|++|++++|+||||+||||+..++..+|.|++|.|.++|.+.+.+......+.+ .++ +..++.
T Consensus 480 ~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~ 559 (716)
T KOG0058|consen 480 DVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIR 559 (716)
T ss_pred CchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHHeeeeeccceeecccHH
Confidence 44578999999999999999999999999999999999999999999999998877766665544 343 467888
Q ss_pred cceeeeeeecCC--------------------CCccccc----cccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchH
Q psy2071 137 QEVGYSIRFEDC--------------------SSPKTVL----KYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATD 192 (302)
Q Consensus 137 ~~v~~~~~~~~~--------------------~~~~~~~----~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD 192 (302)
+|+.|....... ...+|.+ ..||||||||+||||||+.+|.+||||| -|++||
T Consensus 560 eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~VLILDE---ATSALD 636 (716)
T KOG0058|consen 560 ENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLILDE---ATSALD 636 (716)
T ss_pred HHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhcCCCEEEEec---hhhhcc
Confidence 999998752110 0112322 2399999999999999999999999999 899999
Q ss_pred HHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 193 ILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 193 ~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
... .++++.+.+..+ +.|++++.|-+..++ -+|+|++++ .|+.
T Consensus 637 aeSE~lVq~aL~~~~~-~rTVlvIAHRLSTV~-~Ad~Ivvi~-~G~V 680 (716)
T KOG0058|consen 637 AESEYLVQEALDRLMQ-GRTVLVIAHRLSTVR-HADQIVVID-KGRV 680 (716)
T ss_pred hhhHHHHHHHHHHhhc-CCeEEEEehhhhHhh-hccEEEEEc-CCeE
Confidence 877 678888876544 478899999999885 689999998 6653
No 251
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.95 E-value=1e-29 Score=239.97 Aligned_cols=163 Identities=14% Similarity=0.125 Sum_probs=123.6
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhhccccccceee----
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGY---- 141 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~---- 141 (302)
+++++++.|++|++++|+|+||||||||+++|+|+++|++|.+.+.|.... .... .......++.+++.+
T Consensus 39 IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~~-i~~~-----~~l~~~lTV~EnL~l~~~~ 112 (549)
T PRK13545 39 ALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAAL-IAIS-----SGLNGQLTGIENIELKGLM 112 (549)
T ss_pred EEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEeee-EEec-----cccCCCCcHHHHHHhhhhh
Confidence 578999999999999999999999999999999999999999998775311 0000 000001111111111
Q ss_pred --------------eeeecC-CCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHc
Q psy2071 142 --------------SIRFED-CSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVIKQR 205 (302)
Q Consensus 142 --------------~~~~~~-~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~ 205 (302)
.+.... ....++.+..|||||+||++||+||+.+|++||||| |++++|+.. ..+.+++...
T Consensus 113 ~~~~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDE---PTsgLD~~sr~~LlelL~el 189 (549)
T PRK13545 113 MGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDE---ALSVGDQTFTKKCLDKMNEF 189 (549)
T ss_pred cCCCHHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEEC---CcccCCHHHHHHHHHHHHHH
Confidence 001001 112345678899999999999999999999999999 999999887 6777888766
Q ss_pred CCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 206 ADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 206 ~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
.+.+.|||++|||++.+..+||++++|+ .|+.
T Consensus 190 ~~~G~TIIIVSHdl~~i~~l~DrIivL~-~GkI 221 (549)
T PRK13545 190 KEQGKTIFFISHSLSQVKSFCTKALWLH-YGQV 221 (549)
T ss_pred HhCCCEEEEEECCHHHHHHhCCEEEEEE-CCEE
Confidence 5668899999999999999999999998 6653
No 252
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.95 E-value=1.4e-29 Score=244.42 Aligned_cols=169 Identities=14% Similarity=0.160 Sum_probs=126.8
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHH----HHHhhhh-------hccc
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSV----AQRVSEE-------MDCQ 134 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~----~~~~~~~-------~~~~ 134 (302)
.++++++.|++|++++|+||||||||||+++|+|+++|++|.+.+.|........... ..++.+. ...+
T Consensus 278 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~~t 357 (510)
T PRK15439 278 GFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLDAP 357 (510)
T ss_pred CccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCCCc
Confidence 3789999999999999999999999999999999999999999998864321100000 0011110 1112
Q ss_pred ccccee--------e-------------ee-eecCC-CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcch
Q psy2071 135 LGQEVG--------Y-------------SI-RFEDC-SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLAT 191 (302)
Q Consensus 135 ~~~~v~--------~-------------~~-~~~~~-~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~l 191 (302)
+.+++. + .+ .+... ...++.+..|||||+||++||+||+.+|++||||| ||+++
T Consensus 358 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al~~~p~lLlLDE---Pt~gL 434 (510)
T PRK15439 358 LAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDE---PTRGV 434 (510)
T ss_pred HHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHHHhhCCCEEEECC---CCcCc
Confidence 222211 0 00 01111 12356678899999999999999999999999999 99999
Q ss_pred HHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 192 DILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 192 D~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
|+.. ..+.+++....+.|.+||++|||++++.++||++++|+ .|+.
T Consensus 435 D~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l~-~G~i 481 (510)
T PRK15439 435 DVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMH-QGEI 481 (510)
T ss_pred ChhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEE-CCEE
Confidence 9888 78888888766568899999999999999999999998 6653
No 253
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=6.8e-30 Score=226.34 Aligned_cols=169 Identities=18% Similarity=0.203 Sum_probs=124.7
Q ss_pred HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhccc--c---cCCCEEEeecCchh--h---hHHHHHHHhhhh---h
Q psy2071 65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYS--K---SVGAKAVACTQPRR--V---AAMSVAQRVSEE---M 131 (302)
Q Consensus 65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~--~---~~G~~~i~~~~~~~--~---~~~~~~~~~~~~---~ 131 (302)
.+++++++.|++|++++|+|+||||||||+++|+|++. | ++|++.++|.+... . .......++.+. .
T Consensus 26 ~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~ 105 (259)
T PRK14274 26 HALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVELRKNIGMVFQKGNPF 105 (259)
T ss_pred eeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHHHhhceEEEecCCccc
Confidence 35789999999999999999999999999999999987 3 58999998865421 0 000000111111 1
Q ss_pred ccccccceeeeeeec-------------------CC-----CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCC
Q psy2071 132 DCQLGQEVGYSIRFE-------------------DC-----SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHER 187 (302)
Q Consensus 132 ~~~~~~~v~~~~~~~-------------------~~-----~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p 187 (302)
..++.+++.+..... .. ...++....||+||+||++||++|+.+|+++|||| |
T Consensus 106 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~laral~~~p~llllDE---P 182 (259)
T PRK14274 106 PQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIARALATNPDVLLMDE---P 182 (259)
T ss_pred ccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcC---C
Confidence 123333332211000 00 01234567799999999999999999999999999 9
Q ss_pred CcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 188 TLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 188 ~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
++++|+.. ..+.+++....+ +.|+|++||+.+.+.++||++++|+ .|+.
T Consensus 183 t~~LD~~~~~~l~~~l~~~~~-~~tiiivtH~~~~~~~~~d~i~~l~-~G~i 232 (259)
T PRK14274 183 TSALDPVSTRKIEELILKLKE-KYTIVIVTHNMQQAARVSDQTAFFY-MGEL 232 (259)
T ss_pred cccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHHHHHHhCCEEEEEE-CCEE
Confidence 99999887 778888887655 6899999999999999999999998 6653
No 254
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.95 E-value=5.3e-29 Score=244.96 Aligned_cols=167 Identities=15% Similarity=0.190 Sum_probs=131.6
Q ss_pred HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhh------hhccccccc
Q psy2071 65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSE------EMDCQLGQE 138 (302)
Q Consensus 65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~------~~~~~~~~~ 138 (302)
..++++++.|++||.++|+|+||||||||+|+++|++.|+.|+|.++|.+........+.+.+.. .+..++.+|
T Consensus 487 ~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eN 566 (709)
T COG2274 487 PVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIREN 566 (709)
T ss_pred chhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhheeEEcccchhhcCcHHHH
Confidence 46899999999999999999999999999999999999999999999998777666555554432 234455566
Q ss_pred eeeeeeecCC--------------------CCccccc----cccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHH
Q psy2071 139 VGYSIRFEDC--------------------SSPKTVL----KYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDIL 194 (302)
Q Consensus 139 v~~~~~~~~~--------------------~~~~~~~----~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~ 194 (302)
+...-..... ...++.+ ..||||||||++|||||+.+|++||||| +|+++|+.
T Consensus 567 i~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~ILlLDE---aTSaLD~~ 643 (709)
T COG2274 567 IALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDE---ATSALDPE 643 (709)
T ss_pred HhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCCCEEEEeC---cccccCHh
Confidence 5543321110 0112222 3499999999999999999999999999 99999988
Q ss_pred H-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCc
Q psy2071 195 M-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGR 237 (302)
Q Consensus 195 ~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~ 237 (302)
. +.+.+-+.+... |.|+|++||....+ +.||+++||+ .|+
T Consensus 644 sE~~I~~~L~~~~~-~~T~I~IaHRl~ti-~~adrIiVl~-~Gk 684 (709)
T COG2274 644 TEAIILQNLLQILQ-GRTVIIIAHRLSTI-RSADRIIVLD-QGK 684 (709)
T ss_pred HHHHHHHHHHHHhc-CCeEEEEEccchHh-hhccEEEEcc-CCc
Confidence 8 666666665543 58999999999877 5799999999 665
No 255
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.95 E-value=3.1e-29 Score=241.21 Aligned_cols=169 Identities=15% Similarity=0.133 Sum_probs=126.6
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHH-H---HHhhhh-------hccc
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSV-A---QRVSEE-------MDCQ 134 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~-~---~~~~~~-------~~~~ 134 (302)
+++++++.|++|++++|+|+||||||||+++|+|+.+|++|.+.+.|.+......... . .++.+. ...+
T Consensus 263 ~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~ 342 (491)
T PRK10982 263 SIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHGFALVTEERRSTGIYAYLD 342 (491)
T ss_pred ccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCCCEEcCCchhhCCcccCCc
Confidence 5789999999999999999999999999999999999999999998865422111000 0 001000 0111
Q ss_pred cc-----cceeeee--------------------eecC-CCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCC
Q psy2071 135 LG-----QEVGYSI--------------------RFED-CSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERT 188 (302)
Q Consensus 135 ~~-----~~v~~~~--------------------~~~~-~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~ 188 (302)
+. +++.+.. .+.. ....++.+..|||||+||++||++++.+|++||||| ||
T Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~illLDE---Pt 419 (491)
T PRK10982 343 IGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDE---PT 419 (491)
T ss_pred HHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHHHHHHHHHhcCCCEEEEcC---CC
Confidence 11 1110000 0000 012356778899999999999999999999999999 99
Q ss_pred cchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 189 LATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 189 ~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
+++|+.. ..+.+++..+.+.+.|||++|||++++..+||++++|+ .|+.
T Consensus 420 ~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~l~-~g~i 469 (491)
T PRK10982 420 RGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMS-NGLV 469 (491)
T ss_pred cccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhCCEEEEEE-CCEE
Confidence 9999887 77888887766668999999999999999999999998 6654
No 256
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.95 E-value=1.2e-29 Score=219.18 Aligned_cols=163 Identities=16% Similarity=0.165 Sum_probs=119.6
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhh-----------HHHHHHHhhhhhccc
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVA-----------AMSVAQRVSEEMDCQ 134 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~-----------~~~~~~~~~~~~~~~ 134 (302)
+.+++++.|++|++++|+|+||||||||+++|+|+++|++|++.+.|....... ...+.+... .+..+
T Consensus 16 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~-~~~~t 94 (218)
T cd03290 16 TLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYSVAYAAQKPW-LLNAT 94 (218)
T ss_pred ceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcceEEEEcCCCc-ccccc
Confidence 578899999999999999999999999999999999999999999886432110 000111100 11223
Q ss_pred cccceeeeeeecC-----------C------------CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcch
Q psy2071 135 LGQEVGYSIRFED-----------C------------SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLAT 191 (302)
Q Consensus 135 ~~~~v~~~~~~~~-----------~------------~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~l 191 (302)
+.+++.+...... . ...+..+..||+||+||++||++++.+|++||||| |+.++
T Consensus 95 ~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDE---Pt~~L 171 (218)
T cd03290 95 VEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTNIVFLDD---PFSAL 171 (218)
T ss_pred HHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCCCEEEEeC---Ccccc
Confidence 4444433211100 0 00123457899999999999999999999999999 99999
Q ss_pred HHHH-HHHHH--HHHHcCCCcEEEEEEecCHHHHHhhccCCCeee
Q psy2071 192 DILM-GVLKE--VIKQRADLKLVIMSATLDAGKFQQYFDNAPLMN 233 (302)
Q Consensus 192 D~~~-~~l~~--ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~ 233 (302)
|+.. ..+.+ +++...+.+.|+|++||+.+.+. +||++++|+
T Consensus 172 D~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~-~~d~i~~l~ 215 (218)
T cd03290 172 DIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLP-HADWIIAMK 215 (218)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHh-hCCEEEEec
Confidence 9876 55655 66655556889999999999885 699998886
No 257
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.95 E-value=1.2e-29 Score=223.25 Aligned_cols=170 Identities=12% Similarity=0.047 Sum_probs=120.6
Q ss_pred HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcc--cccCCCEEEeecCchhhhHHHH----HHHhhhhh----ccc
Q psy2071 65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEY--SKSVGAKAVACTQPRRVAAMSV----AQRVSEEM----DCQ 134 (302)
Q Consensus 65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~--~~~~G~~~i~~~~~~~~~~~~~----~~~~~~~~----~~~ 134 (302)
.+++++++.|++|++++|+|+||||||||+++|+|+. +|++|++.++|.+......... ...+.+.. ..+
T Consensus 15 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 94 (248)
T PRK09580 15 AILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGIFMAFQYPVEIPGVS 94 (248)
T ss_pred eeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcceEEEecCchhccchh
Confidence 3678999999999999999999999999999999995 6999999998865422110000 00000000 000
Q ss_pred -------cccceeee-----eee-------------cCC--CCcccccc-ccCHHHHHHHhccccCCCCCcEEEEcCCCC
Q psy2071 135 -------LGQEVGYS-----IRF-------------EDC--SSPKTVLK-YMTDGMLLREGMSDPMLENYQVILLDEAHE 186 (302)
Q Consensus 135 -------~~~~v~~~-----~~~-------------~~~--~~~~~~~~-~lS~G~~qr~~la~al~~~p~lliLDE~~~ 186 (302)
...++... ... ... ...++... .||+||+||++||+|++.+|++|||||
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~illLDE--- 171 (248)
T PRK09580 95 NQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDE--- 171 (248)
T ss_pred HHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEeC---
Confidence 00000000 000 000 01122232 699999999999999999999999999
Q ss_pred CCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhh-ccCCCeeeecCcC
Q psy2071 187 RTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQY-FDNAPLMNVPGRT 238 (302)
Q Consensus 187 p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~-~d~~~~l~i~g~~ 238 (302)
||+++|+.. ..+.++++...+.+.|||++|||.+.+..+ ||++++|+ .|+.
T Consensus 172 Pt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~~~~d~i~~l~-~g~i 224 (248)
T PRK09580 172 SDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLY-QGRI 224 (248)
T ss_pred CCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhhCCEEEEEE-CCeE
Confidence 999999887 778888876655678999999999999887 89999997 6653
No 258
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.95 E-value=2.9e-29 Score=212.89 Aligned_cols=173 Identities=18% Similarity=0.194 Sum_probs=125.6
Q ss_pred CChhHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhh----------HHHHHHHhhhh
Q psy2071 61 LPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVA----------AMSVAQRVSEE 130 (302)
Q Consensus 61 lp~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~----------~~~~~~~~~~~ 130 (302)
...+++++||++.+++||.+||+|+||||||||+++|+|.++|++|++.+.|.-..-+. ...........
T Consensus 37 ~~~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~~li~lg~Gf~pelTGreNi~l~~~~ 116 (249)
T COG1134 37 VAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPLIELGAGFDPELTGRENIYLRGLI 116 (249)
T ss_pred cceEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEehhhhcccCCCcccchHHHHHHHHHH
Confidence 34566799999999999999999999999999999999999999999998875321110 00001111111
Q ss_pred hccccc---cceeeeeeecCC-CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHc
Q psy2071 131 MDCQLG---QEVGYSIRFEDC-SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVIKQR 205 (302)
Q Consensus 131 ~~~~~~---~~v~~~~~~~~~-~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~ 205 (302)
++.+.. +.+...+.|... ...+.+++.+|.||+-|++++.|...+|++||+|| -.+.-|... +...+.+..+
T Consensus 117 ~G~~~~ei~~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDE---vlavGD~~F~~K~~~rl~e~ 193 (249)
T COG1134 117 LGLTRKEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDE---VLAVGDAAFQEKCLERLNEL 193 (249)
T ss_pred hCccHHHHHHHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEeh---hhhcCCHHHHHHHHHHHHHH
Confidence 111100 011111111111 23467889999999999999999999999999999 677888766 5555555555
Q ss_pred CCCcEEEEEEecCHHHHHhhccCCCeeeecCc
Q psy2071 206 ADLKLVIMSATLDAGKFQQYFDNAPLMNVPGR 237 (302)
Q Consensus 206 ~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~ 237 (302)
.+.+.|+++||||++.+.++||++++|+ .|.
T Consensus 194 ~~~~~tiv~VSHd~~~I~~~Cd~~i~l~-~G~ 224 (249)
T COG1134 194 VEKNKTIVLVSHDLGAIKQYCDRAIWLE-HGQ 224 (249)
T ss_pred HHcCCEEEEEECCHHHHHHhcCeeEEEe-CCE
Confidence 4446899999999999999999999999 664
No 259
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.95 E-value=2.8e-29 Score=222.97 Aligned_cols=165 Identities=16% Similarity=0.172 Sum_probs=122.3
Q ss_pred HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhccc-----ccCCCEEEeecCchh-----hhHHHHHHHhhhh---h
Q psy2071 65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYS-----KSVGAKAVACTQPRR-----VAAMSVAQRVSEE---M 131 (302)
Q Consensus 65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~-----~~~G~~~i~~~~~~~-----~~~~~~~~~~~~~---~ 131 (302)
.+++++++.|++|++++|+|+||||||||+++|+|++. |++|.+.+.|.+... .........+.+. .
T Consensus 24 ~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~ 103 (264)
T PRK14243 24 LAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEVRRRIGMVFQKPNPF 103 (264)
T ss_pred EEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChHHHhhhEEEEccCCccc
Confidence 35789999999999999999999999999999999976 378999998864321 0000000111111 1
Q ss_pred ccccccceeeeeeec-----------------CC-----CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCc
Q psy2071 132 DCQLGQEVGYSIRFE-----------------DC-----SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTL 189 (302)
Q Consensus 132 ~~~~~~~v~~~~~~~-----------------~~-----~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~ 189 (302)
..++.+++.+..... .. ...+..+..||+||+||++||+||+.+|++||||| |++
T Consensus 104 ~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDE---Pt~ 180 (264)
T PRK14243 104 PKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDE---PCS 180 (264)
T ss_pred cccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC---CCc
Confidence 124444443321100 00 01234556799999999999999999999999999 999
Q ss_pred chHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeee
Q psy2071 190 ATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMN 233 (302)
Q Consensus 190 ~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~ 233 (302)
++|+.. ..+.+++....+ +.|||++||+.+.+.++||++++|+
T Consensus 181 ~LD~~~~~~l~~~L~~~~~-~~tvi~vtH~~~~~~~~~d~v~~l~ 224 (264)
T PRK14243 181 ALDPISTLRIEELMHELKE-QYTIIIVTHNMQQAARVSDMTAFFN 224 (264)
T ss_pred cCCHHHHHHHHHHHHHHhc-CCEEEEEecCHHHHHHhCCEEEEEe
Confidence 999887 778888887655 4799999999999999999999997
No 260
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.95 E-value=1.2e-29 Score=246.03 Aligned_cols=169 Identities=15% Similarity=0.181 Sum_probs=124.8
Q ss_pred HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccc-----cCCCEEEeecCchhhhHH---HH----HHHhhhhh-
Q psy2071 65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSK-----SVGAKAVACTQPRRVAAM---SV----AQRVSEEM- 131 (302)
Q Consensus 65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~-----~~G~~~i~~~~~~~~~~~---~~----~~~~~~~~- 131 (302)
.+++++++.|++||+++|+||||||||||+++|+|+++| ++|++.+.|......... .. ...+.+..
T Consensus 23 ~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~Q~~~ 102 (529)
T PRK15134 23 TVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEPM 102 (529)
T ss_pred eeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHHHHHHHhcCceEEEecCch
Confidence 357899999999999999999999999999999999986 789999988654221100 00 01111110
Q ss_pred -----ccccccceee-------------------eeeecCCC----CccccccccCHHHHHHHhccccCCCCCcEEEEcC
Q psy2071 132 -----DCQLGQEVGY-------------------SIRFEDCS----SPKTVLKYMTDGMLLREGMSDPMLENYQVILLDE 183 (302)
Q Consensus 132 -----~~~~~~~v~~-------------------~~~~~~~~----~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE 183 (302)
..++.+++.+ .+...... ..++.+..|||||+||++||+||+.+|++|||||
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~qrv~iAraL~~~p~llllDE 182 (529)
T PRK15134 103 VSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALLTRPELLIADE 182 (529)
T ss_pred hhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 1112121110 00000111 1245678899999999999999999999999999
Q ss_pred CCCCCcchHHHH-HHHHHHHHHcCC-CcEEEEEEecCHHHHHhhccCCCeeeecCc
Q psy2071 184 AHERTLATDILM-GVLKEVIKQRAD-LKLVIMSATLDAGKFQQYFDNAPLMNVPGR 237 (302)
Q Consensus 184 ~~~p~~~lD~~~-~~l~~ll~~~~~-~~~~ii~~thd~~~~~~~~d~~~~l~i~g~ 237 (302)
||+++|+.. ..+.+++++... .+.|||++|||++.+..+||++++|+ .|+
T Consensus 183 ---Pt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~-~G~ 234 (529)
T PRK15134 183 ---PTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQ-NGR 234 (529)
T ss_pred ---CCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEE-CCE
Confidence 999999888 778888877543 47899999999999999999999998 565
No 261
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=1.5e-29 Score=223.09 Aligned_cols=168 Identities=15% Similarity=0.187 Sum_probs=123.5
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhccc-----ccCCCEEEeecCchhhh-----HHHHHHHhhhh---hc
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYS-----KSVGAKAVACTQPRRVA-----AMSVAQRVSEE---MD 132 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~-----~~~G~~~i~~~~~~~~~-----~~~~~~~~~~~---~~ 132 (302)
+++++++.|++|++++|+|+||||||||+++|+|+.. |++|++.+.|.+..... .......+.+. +.
T Consensus 20 ~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~ 99 (251)
T PRK14244 20 ILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKPNPFP 99 (251)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHhhhEEEEecCccccc
Confidence 5788999999999999999999999999999999976 46899999886432110 00000111111 11
Q ss_pred cccccceeeeeee--------------------cCCC-----CccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCC
Q psy2071 133 CQLGQEVGYSIRF--------------------EDCS-----SPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHER 187 (302)
Q Consensus 133 ~~~~~~v~~~~~~--------------------~~~~-----~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p 187 (302)
.++.+++.+.... .... ..+.....||+||+||++||++|+.+|++||||| |
T Consensus 100 ~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDE---P 176 (251)
T PRK14244 100 KSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDE---P 176 (251)
T ss_pred CCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeC---C
Confidence 1333333221000 0000 1123456799999999999999999999999999 9
Q ss_pred CcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 188 TLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 188 ~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
++++|+.. ..+.+++....+ +.||+++||+.+++.++||++++|+ .|+.
T Consensus 177 t~~LD~~~~~~l~~~l~~~~~-~~tiiiisH~~~~~~~~~d~i~~l~-~G~i 226 (251)
T PRK14244 177 CSALDPVATNVIENLIQELKK-NFTIIVVTHSMKQAKKVSDRVAFFQ-SGRI 226 (251)
T ss_pred CccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHHHHHhhcCEEEEEE-CCEE
Confidence 99999887 778888876654 7899999999999999999999998 6654
No 262
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=2.2e-29 Score=224.70 Aligned_cols=165 Identities=14% Similarity=0.136 Sum_probs=122.0
Q ss_pred HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccc-----cCCCEEEeecCchh--hhH---HHHHHHhhhh---h
Q psy2071 65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSK-----SVGAKAVACTQPRR--VAA---MSVAQRVSEE---M 131 (302)
Q Consensus 65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~-----~~G~~~i~~~~~~~--~~~---~~~~~~~~~~---~ 131 (302)
.+++++++.|++|++++|+|+||||||||+++|+|++.| ++|.+.+.|.+... ... .....++.+. .
T Consensus 34 ~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~~~~~~i~~v~q~~~l~ 113 (274)
T PRK14265 34 LALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRRQVGMVFQRPNPF 113 (274)
T ss_pred EEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhHHHhhcEEEEccCCccc
Confidence 357899999999999999999999999999999999863 58999998865321 000 0000111111 1
Q ss_pred ccccccceeeeee-----------------ecCC-----CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCc
Q psy2071 132 DCQLGQEVGYSIR-----------------FEDC-----SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTL 189 (302)
Q Consensus 132 ~~~~~~~v~~~~~-----------------~~~~-----~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~ 189 (302)
..++.+++.+... .... ...++.+..||+||+||++||+||+.+|++||||| |++
T Consensus 114 ~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDE---Pt~ 190 (274)
T PRK14265 114 PKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDE---PCS 190 (274)
T ss_pred cccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeC---Ccc
Confidence 1133333322110 0000 01234567799999999999999999999999999 999
Q ss_pred chHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeee
Q psy2071 190 ATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMN 233 (302)
Q Consensus 190 ~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~ 233 (302)
++|+.. ..+.+++....+ +.|||++|||.+.+..+||++++|+
T Consensus 191 ~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~ 234 (274)
T PRK14265 191 ALDPISTRQVEELCLELKE-QYTIIMVTHNMQQASRVADWTAFFN 234 (274)
T ss_pred cCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEe
Confidence 999887 778888887655 5899999999999999999999996
No 263
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=2e-29 Score=222.23 Aligned_cols=168 Identities=15% Similarity=0.160 Sum_probs=122.9
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhc---ccc--cCCCEEEeecCchhh-----hHHHHHHHhhhh---hc
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVE---YSK--SVGAKAVACTQPRRV-----AAMSVAQRVSEE---MD 132 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~---~~~--~~G~~~i~~~~~~~~-----~~~~~~~~~~~~---~~ 132 (302)
+.+++++.|++|++++|+|+||||||||+++|+|+ ++| ++|++.+.|.+.... .......++.+. ..
T Consensus 18 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~ 97 (250)
T PRK14245 18 ALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPNPFP 97 (250)
T ss_pred EEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHHHhhheEEEecCCccCc
Confidence 57889999999999999999999999999999997 354 489999988654221 000000111110 11
Q ss_pred cccccceeeee-------------------eecCC-----CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCC
Q psy2071 133 CQLGQEVGYSI-------------------RFEDC-----SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERT 188 (302)
Q Consensus 133 ~~~~~~v~~~~-------------------~~~~~-----~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~ 188 (302)
.++.+++.+.. ..... ...+.....||+||+||++||++|+.+|++||||| |+
T Consensus 98 ~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDE---Pt 174 (250)
T PRK14245 98 KSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDE---PA 174 (250)
T ss_pred ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC---CC
Confidence 23333332211 00000 01234567899999999999999999999999999 99
Q ss_pred cchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 189 LATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 189 ~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
+++|+.. ..+.+++.+..+ +.|||++||+.+.+.++||++++|+ .|+.
T Consensus 175 ~~LD~~~~~~l~~~l~~~~~-~~tiiivtH~~~~~~~~~d~v~~l~-~G~~ 223 (250)
T PRK14245 175 SALDPISTAKVEELIHELKK-DYTIVIVTHNMQQAARVSDKTAFFY-MGEM 223 (250)
T ss_pred ccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHHHHHhhCCEEEEEE-CCEE
Confidence 9999887 778888887654 6899999999999999999999998 6654
No 264
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.95 E-value=1.9e-29 Score=244.35 Aligned_cols=168 Identities=15% Similarity=0.143 Sum_probs=125.3
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEe-ecCc---hhh----------hHHHHHHHhhhhh
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVA-CTQP---RRV----------AAMSVAQRVSEEM 131 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~-~~~~---~~~----------~~~~~~~~~~~~~ 131 (302)
+++++++.|++|++++|+||||||||||+++|+|+++|++|++.+. |... ... ....+.+......
T Consensus 299 il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~ 378 (520)
T TIGR03269 299 AVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYP 378 (520)
T ss_pred EEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchhhHHHHhhhEEEEccCcccCC
Confidence 5789999999999999999999999999999999999999999995 4211 100 0000111111111
Q ss_pred ccccccceeeee-----------------eecCCC------CccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCC
Q psy2071 132 DCQLGQEVGYSI-----------------RFEDCS------SPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERT 188 (302)
Q Consensus 132 ~~~~~~~v~~~~-----------------~~~~~~------~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~ 188 (302)
..++.+++.+.. ...... ..++.+..|||||+||++||+||+.+|++||||| ||
T Consensus 379 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lLllDE---Pt 455 (520)
T TIGR03269 379 HRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDE---PT 455 (520)
T ss_pred CCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC---Cc
Confidence 233333332110 000111 1346678899999999999999999999999999 99
Q ss_pred cchHHHH-HHHHHHHHHcC-CCcEEEEEEecCHHHHHhhccCCCeeeecCc
Q psy2071 189 LATDILM-GVLKEVIKQRA-DLKLVIMSATLDAGKFQQYFDNAPLMNVPGR 237 (302)
Q Consensus 189 ~~lD~~~-~~l~~ll~~~~-~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~ 237 (302)
+++|+.. ..+.+++.... +.+.|||++|||++++.++||++++|+ .|+
T Consensus 456 ~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~-~G~ 505 (520)
T TIGR03269 456 GTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMR-DGK 505 (520)
T ss_pred ccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEE-CCE
Confidence 9999888 77888887664 348899999999999999999999998 665
No 265
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.95 E-value=1.1e-29 Score=216.63 Aligned_cols=159 Identities=15% Similarity=0.105 Sum_probs=118.7
Q ss_pred HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHH---hh----hhhcccccc
Q psy2071 65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQR---VS----EEMDCQLGQ 137 (302)
Q Consensus 65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~---~~----~~~~~~~~~ 137 (302)
.+++++++.|++|++++|+|+||||||||+++|+|+++|++|++.++|.+..+... ...+. +. .....++.+
T Consensus 15 ~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~-~~~~~i~~~~q~~~~~~~~tv~~ 93 (200)
T PRK13540 15 PLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLC-TYQKQLCFVGHRSGINPYLTLRE 93 (200)
T ss_pred eEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCHH-HHHhheEEeccccccCcCCCHHH
Confidence 35789999999999999999999999999999999999999999999876432111 11111 11 112334455
Q ss_pred ceeeeeee--------------cCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHH
Q psy2071 138 EVGYSIRF--------------EDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVI 202 (302)
Q Consensus 138 ~v~~~~~~--------------~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll 202 (302)
++.+.... ......+..+..||+||+||++||+|++.+|++||||| |++++|+.. ..+.+++
T Consensus 94 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~lilDE---P~~~LD~~~~~~l~~~l 170 (200)
T PRK13540 94 NCLYDIHFSPGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDE---PLVALDELSLLTIITKI 170 (200)
T ss_pred HHHHHHhcCcchHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeC---CCcccCHHHHHHHHHHH
Confidence 44332100 00011244567799999999999999999999999999 999999887 7888888
Q ss_pred HHcCCCcEEEEEEecCHHHHHhhccC
Q psy2071 203 KQRADLKLVIMSATLDAGKFQQYFDN 228 (302)
Q Consensus 203 ~~~~~~~~~ii~~thd~~~~~~~~d~ 228 (302)
....+.+.|++++||+...+.. ||.
T Consensus 171 ~~~~~~~~tiii~sh~~~~~~~-~d~ 195 (200)
T PRK13540 171 QEHRAKGGAVLLTSHQDLPLNK-ADY 195 (200)
T ss_pred HHHHHcCCEEEEEeCCchhccc-cch
Confidence 8765558899999999887754 664
No 266
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=3.4e-29 Score=221.14 Aligned_cols=169 Identities=16% Similarity=0.196 Sum_probs=124.8
Q ss_pred HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhccc--c---cCCCEEEeecCchhh--hHHHH---HHHhhh---hh
Q psy2071 65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYS--K---SVGAKAVACTQPRRV--AAMSV---AQRVSE---EM 131 (302)
Q Consensus 65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~--~---~~G~~~i~~~~~~~~--~~~~~---~~~~~~---~~ 131 (302)
.+++++++.|++|++++|+|+||||||||+++|+|+.. | ++|++.+.|.+.... ..... ...+.+ .+
T Consensus 20 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 99 (253)
T PRK14261 20 HALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVALRRKIGMVFQRPNPF 99 (253)
T ss_pred eeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhhhhceEEEEecCCccC
Confidence 46789999999999999999999999999999999875 3 479999988654221 00000 011111 11
Q ss_pred ccccccceeeeeeecC-------------------C-----CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCC
Q psy2071 132 DCQLGQEVGYSIRFED-------------------C-----SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHER 187 (302)
Q Consensus 132 ~~~~~~~v~~~~~~~~-------------------~-----~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p 187 (302)
..++.+++.+...... . ...++....||+||+||++||++++.+|+++|||| |
T Consensus 100 ~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDE---P 176 (253)
T PRK14261 100 PKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDE---P 176 (253)
T ss_pred cccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeC---C
Confidence 1244444433211100 0 01234556799999999999999999999999999 9
Q ss_pred CcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 188 TLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 188 ~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
++++|+.. ..+.+++....+ +.|+|++||+++.+.++||++++|+ .|+.
T Consensus 177 ~~gLD~~~~~~l~~~l~~~~~-~~tvii~sh~~~~~~~~~d~v~~l~-~G~i 226 (253)
T PRK14261 177 CSALDPIATAKIEDLIEDLKK-EYTVIIVTHNMQQAARVSDYTGFMY-LGKL 226 (253)
T ss_pred cccCCHHHHHHHHHHHHHHhh-CceEEEEEcCHHHHHhhCCEEEEEE-CCEE
Confidence 99999887 778888887655 5799999999999999999999998 6664
No 267
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=7.2e-29 Score=203.53 Aligned_cols=140 Identities=21% Similarity=0.262 Sum_probs=116.9
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhhccccccceeeeeee
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRF 145 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 145 (302)
+++++++.+++|++++|+|+||||||||+++|+|+++|+.|++.+.+......... .....++|..+
T Consensus 14 ~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~------------~~~~~i~~~~q- 80 (157)
T cd00267 14 ALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLE------------ELRRRIGYVPQ- 80 (157)
T ss_pred eEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHH------------HHHhceEEEee-
Confidence 57788999999999999999999999999999999999999999988643221100 01123444433
Q ss_pred cCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHh
Q psy2071 146 EDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQ 224 (302)
Q Consensus 146 ~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~ 224 (302)
||+||+||+++|++++.+|+++|||| |+.++|... ..+.+++....+.+.+++++||+.+++..
T Consensus 81 ------------lS~G~~~r~~l~~~l~~~~~i~ilDE---p~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~ 145 (157)
T cd00267 81 ------------LSGGQRQRVALARALLLNPDLLLLDE---PTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAEL 145 (157)
T ss_pred ------------CCHHHHHHHHHHHHHhcCCCEEEEeC---CCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 99999999999999999999999999 999999877 77878887655446899999999999999
Q ss_pred hccCCCeee
Q psy2071 225 YFDNAPLMN 233 (302)
Q Consensus 225 ~~d~~~~l~ 233 (302)
+||+++++.
T Consensus 146 ~~d~i~~l~ 154 (157)
T cd00267 146 AADRVIVLK 154 (157)
T ss_pred hCCEEEEEe
Confidence 999998886
No 268
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.95 E-value=1.4e-28 Score=204.17 Aligned_cols=171 Identities=14% Similarity=0.197 Sum_probs=132.2
Q ss_pred hHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHH---hhhhh------ccc
Q psy2071 64 FEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQR---VSEEM------DCQ 134 (302)
Q Consensus 64 ~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~---~~~~~------~~~ 134 (302)
..++.+++..|.+|+++.|+|.||||||||++.++|.+.|++|.|.|+|.+..+.+....+.+ |++.+ ..+
T Consensus 19 k~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~~lT 98 (263)
T COG1101 19 KRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPELT 98 (263)
T ss_pred HHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHHHHHhcchhhCCccccc
Confidence 346889999999999999999999999999999999999999999999988766554433332 32221 234
Q ss_pred cccceeeeee----------ecC-----------------CCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCC
Q psy2071 135 LGQEVGYSIR----------FED-----------------CSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHER 187 (302)
Q Consensus 135 ~~~~v~~~~~----------~~~-----------------~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p 187 (302)
+.+|+..... ... .....+++..|||||||-++++.|-++.|++|+||| .
T Consensus 99 ieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~~pkiLLLDE---H 175 (263)
T COG1101 99 IEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDE---H 175 (263)
T ss_pred HHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcCCCcEEEecc---h
Confidence 4444432210 000 011245677799999999999999999999999999 9
Q ss_pred CcchHHHH-HHHHHHHHH-cCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 188 TLATDILM-GVLKEVIKQ-RADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 188 ~~~lD~~~-~~l~~ll~~-~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
|+++||-. ..+.++-.+ ..+.+.|.+++||+++.+..|.+|.++|+ .|++
T Consensus 176 TAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~Al~yG~RlImLh-~G~I 227 (263)
T COG1101 176 TAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLH-SGKI 227 (263)
T ss_pred hhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHHHHHhhCCeEEEEe-CCeE
Confidence 99999877 555555443 34568999999999999999999999999 7753
No 269
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.95 E-value=1.2e-28 Score=196.07 Aligned_cols=173 Identities=16% Similarity=0.142 Sum_probs=133.9
Q ss_pred CChhHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCch------hhhHH-------HHHHHh
Q psy2071 61 LPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPR------RVAAM-------SVAQRV 127 (302)
Q Consensus 61 lp~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~------~~~~~-------~~~~~~ 127 (302)
+...+.+-||++..++|+.++++||+|+|||||++.+..+.-|.+|+..|.+.... ..... .+.++.
T Consensus 12 yg~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~lr~~vgmvfqqy 91 (242)
T COG4161 12 YGAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQY 91 (242)
T ss_pred cccchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHHHHHhhhhhhhhh
Confidence 34556788899999999999999999999999999999999999999998876421 11111 122222
Q ss_pred hhhhccccccceeee-ee-------------------ecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCC
Q psy2071 128 SEEMDCQLGQEVGYS-IR-------------------FEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHER 187 (302)
Q Consensus 128 ~~~~~~~~~~~v~~~-~~-------------------~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p 187 (302)
...+..++.+|+-.. .+ +......++..-.|||||+||++|||||+.+|++|++|| |
T Consensus 92 ~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvaiaralmmkpqvllfde---p 168 (242)
T COG4161 92 NLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMMEPQVLLFDE---P 168 (242)
T ss_pred ccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHHHHHHhcCCcEEeecC---c
Confidence 223334444443221 11 111123445556699999999999999999999999999 9
Q ss_pred CcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCc
Q psy2071 188 TLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGR 237 (302)
Q Consensus 188 ~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~ 237 (302)
|.++|+.. ..+.++++.+.+.|+|-+++||..+.+...+.++..|. .|+
T Consensus 169 taaldpeitaqvv~iikel~~tgitqvivthev~va~k~as~vvyme-~g~ 218 (242)
T COG4161 169 TAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYME-NGH 218 (242)
T ss_pred ccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhHHHhhhhheEeee-cCe
Confidence 99999887 88899999999999999999999999999999999998 554
No 270
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.95 E-value=2.7e-29 Score=243.63 Aligned_cols=169 Identities=17% Similarity=0.131 Sum_probs=126.8
Q ss_pred HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhH------HHHHHHhhh------hhc
Q psy2071 65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAA------MSVAQRVSE------EMD 132 (302)
Q Consensus 65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~------~~~~~~~~~------~~~ 132 (302)
.+++++++.|++|++++|+||||||||||+++|+|+++ ++|++.+.|.+...... .....++.+ ...
T Consensus 300 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~ 378 (529)
T PRK15134 300 VVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-SQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPR 378 (529)
T ss_pred eeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-CCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhcCCc
Confidence 36799999999999999999999999999999999985 89999998864321110 000011111 112
Q ss_pred cccccceeeeee--------------------ecCCC--CccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcc
Q psy2071 133 CQLGQEVGYSIR--------------------FEDCS--SPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLA 190 (302)
Q Consensus 133 ~~~~~~v~~~~~--------------------~~~~~--~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~ 190 (302)
.++.+++.+... ..... ..++.+..|||||+||++||+||+.+|++||||| ||++
T Consensus 379 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDE---Pt~~ 455 (529)
T PRK15134 379 LNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDE---PTSS 455 (529)
T ss_pred ccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHHHHHHHHHHHhCCCCEEEeeC---Cccc
Confidence 344444432210 00111 1245667899999999999999999999999999 9999
Q ss_pred hHHHH-HHHHHHHHHcCC-CcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 191 TDILM-GVLKEVIKQRAD-LKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 191 lD~~~-~~l~~ll~~~~~-~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
+|+.. ..+.+++.+..+ .+.|||++|||++++..+||++++|+ .|+.
T Consensus 456 LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~-~G~i 504 (529)
T PRK15134 456 LDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLR-QGEV 504 (529)
T ss_pred cCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEEEE-CCEE
Confidence 99887 778888876654 47899999999999999999999998 6653
No 271
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.95 E-value=3e-29 Score=242.97 Aligned_cols=168 Identities=10% Similarity=0.057 Sum_probs=123.1
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcc--cccCCCEEEee-----------------------cCc-----
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEY--SKSVGAKAVAC-----------------------TQP----- 115 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~--~~~~G~~~i~~-----------------------~~~----- 115 (302)
+++++++.|++|++++|+||||||||||+++|+|++ +|++|++.+.+ ...
T Consensus 15 ~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~ 94 (520)
T TIGR03269 15 VLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVGEPCPVCGGTLEPEEV 94 (520)
T ss_pred eeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccccccccccccccccccch
Confidence 578999999999999999999999999999999997 79999998862 100
Q ss_pred --hh--hhH-HHHH---HHhhh-----hhccccccceeeeeeec-------------------CCCCccccccccCHHHH
Q psy2071 116 --RR--VAA-MSVA---QRVSE-----EMDCQLGQEVGYSIRFE-------------------DCSSPKTVLKYMTDGML 163 (302)
Q Consensus 116 --~~--~~~-~~~~---~~~~~-----~~~~~~~~~v~~~~~~~-------------------~~~~~~~~~~~lS~G~~ 163 (302)
.. ... .... ..+.+ ....++.+++.+..... .....++.+..|||||+
T Consensus 95 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~ 174 (520)
T TIGR03269 95 DFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSHRITHIARDLSGGEK 174 (520)
T ss_pred hhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcCcccCCHHHH
Confidence 00 000 0000 11111 11224444443321100 00112445678999999
Q ss_pred HHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHc-CCCcEEEEEEecCHHHHHhhccCCCeeeecCc
Q psy2071 164 LREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVIKQR-ADLKLVIMSATLDAGKFQQYFDNAPLMNVPGR 237 (302)
Q Consensus 164 qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~-~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~ 237 (302)
||++||+||+.+|++||||| ||+++|+.. ..+.+++.++ ++.|.|||++|||.+.+.++||++++|+ .|+
T Consensus 175 qrv~iA~al~~~p~lllLDE---Pt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~i~~l~-~G~ 246 (520)
T TIGR03269 175 QRVVLARQLAKEPFLFLADE---PTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDKAIWLE-NGE 246 (520)
T ss_pred HHHHHHHHHhcCCCEEEeeC---CcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEe-CCE
Confidence 99999999999999999999 999999888 7787888765 3458899999999999999999999998 554
No 272
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.95 E-value=5.3e-29 Score=207.20 Aligned_cols=153 Identities=20% Similarity=0.201 Sum_probs=113.1
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhhccccccceeeeeee
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRF 145 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 145 (302)
+++++++.+++|++++|+||||||||||++++. +++|.+.+.+....... ..+ .++.+ ....+.++.
T Consensus 10 ~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il----~~~G~v~~~~~~~~~~~-~~~-~~~~q---~~~l~~~~L---- 76 (176)
T cd03238 10 NLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGL----YASGKARLISFLPKFSR-NKL-IFIDQ---LQFLIDVGL---- 76 (176)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHh----hcCCcEEECCccccccc-ccE-EEEhH---HHHHHHcCC----
Confidence 468899999999999999999999999999875 36898888755221100 000 00000 000111111
Q ss_pred cCCCCccccccccCHHHHHHHhccccCCCC--CcEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHH
Q psy2071 146 EDCSSPKTVLKYMTDGMLLREGMSDPMLEN--YQVILLDEAHERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKF 222 (302)
Q Consensus 146 ~~~~~~~~~~~~lS~G~~qr~~la~al~~~--p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~ 222 (302)
.. ...+.....||+||+||+++|++++.+ |+++|||| |++++|+.. ..+.++++...+.+.+||++||+.+++
T Consensus 77 ~~-~~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDE---Pt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~ 152 (176)
T cd03238 77 GY-LTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDE---PSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVL 152 (176)
T ss_pred Cc-cccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeC---CcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH
Confidence 00 123456788999999999999999999 99999999 999999887 778888876655689999999999987
Q ss_pred HhhccCCCeeeecCc
Q psy2071 223 QQYFDNAPLMNVPGR 237 (302)
Q Consensus 223 ~~~~d~~~~l~i~g~ 237 (302)
++||++++|. .|.
T Consensus 153 -~~~d~i~~l~-~g~ 165 (176)
T cd03238 153 -SSADWIIDFG-PGS 165 (176)
T ss_pred -HhCCEEEEEC-CCC
Confidence 5799999997 444
No 273
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.95 E-value=2.5e-29 Score=224.22 Aligned_cols=169 Identities=17% Similarity=0.167 Sum_probs=124.8
Q ss_pred HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccc-----cCCCEEEeecCchhh--hH---HHHHHHhhhh---h
Q psy2071 65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSK-----SVGAKAVACTQPRRV--AA---MSVAQRVSEE---M 131 (302)
Q Consensus 65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~-----~~G~~~i~~~~~~~~--~~---~~~~~~~~~~---~ 131 (302)
.+++++++.|++|++++|+|+||||||||+++|+|+++| ++|++.+.|.+.... .. ......+.+. +
T Consensus 39 ~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l~ 118 (272)
T PRK14236 39 QALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPNPF 118 (272)
T ss_pred eEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHHHHhccEEEEecCCccC
Confidence 357899999999999999999999999999999999873 799999988653210 00 0000011110 1
Q ss_pred ccccccceeeeeee-------------------cCC-----CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCC
Q psy2071 132 DCQLGQEVGYSIRF-------------------EDC-----SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHER 187 (302)
Q Consensus 132 ~~~~~~~v~~~~~~-------------------~~~-----~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p 187 (302)
..++.+++.+.... ... ...+.....||+||+||++||+||+.+|++||||| |
T Consensus 119 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDE---P 195 (272)
T PRK14236 119 PKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIARAIAIEPEVLLLDE---P 195 (272)
T ss_pred cccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHHHHHHHHCCCCEEEEeC---C
Confidence 11333333221100 000 01234567799999999999999999999999999 9
Q ss_pred CcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 188 TLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 188 ~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
++++|+.. ..+.+++.+..+ +.|++++||+.+++.++||++++|+ .|+.
T Consensus 196 t~gLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~~~~~~~d~i~~l~-~G~i 245 (272)
T PRK14236 196 TSALDPISTLKIEELITELKS-KYTIVIVTHNMQQAARVSDYTAFMY-MGKL 245 (272)
T ss_pred cccCCHHHHHHHHHHHHHHHh-CCeEEEEeCCHHHHHhhCCEEEEEE-CCEE
Confidence 99999887 778888887655 6799999999999999999999998 6664
No 274
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=2.4e-29 Score=224.68 Aligned_cols=174 Identities=20% Similarity=0.132 Sum_probs=126.7
Q ss_pred CCChhHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccc-----cCCCEEEeecCchhhh----HHHHHHHhhhh
Q psy2071 60 TLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSK-----SVGAKAVACTQPRRVA----AMSVAQRVSEE 130 (302)
Q Consensus 60 ~lp~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~-----~~G~~~i~~~~~~~~~----~~~~~~~~~~~ 130 (302)
.++...+.+++++.|++|++++|+|+||||||||+++|+|+++| ++|++.+.|....... ......++.+.
T Consensus 30 ~~~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~ 109 (276)
T PRK14271 30 GFAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRRRVGMLFQR 109 (276)
T ss_pred EECCEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHHHhhheEEeccC
Confidence 34333467899999999999999999999999999999999985 6899999885432110 00001111111
Q ss_pred ---hccccccceeeeeee-------------------cCCC-----CccccccccCHHHHHHHhccccCCCCCcEEEEcC
Q psy2071 131 ---MDCQLGQEVGYSIRF-------------------EDCS-----SPKTVLKYMTDGMLLREGMSDPMLENYQVILLDE 183 (302)
Q Consensus 131 ---~~~~~~~~v~~~~~~-------------------~~~~-----~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE 183 (302)
+..++.+++.+.... .... ..++.+..||+||+||++||++|+.+|++|||||
T Consensus 110 ~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LAral~~~p~lllLDE 189 (276)
T PRK14271 110 PNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDE 189 (276)
T ss_pred CccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 112344443321100 0000 1134467799999999999999999999999999
Q ss_pred CCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 184 AHERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 184 ~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
|++++|+.. ..+.+++....+ +.|||++||+.+++.++||++++|+ .|+.
T Consensus 190 ---Pt~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~~~~~~~dri~~l~-~G~i 240 (276)
T PRK14271 190 ---PTSALDPTTTEKIEEFIRSLAD-RLTVIIVTHNLAQAARISDRAALFF-DGRL 240 (276)
T ss_pred ---CcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEE-CCEE
Confidence 999999887 778888877655 4799999999999999999999998 6654
No 275
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=1.9e-29 Score=222.64 Aligned_cols=169 Identities=18% Similarity=0.177 Sum_probs=122.6
Q ss_pred HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhccc--c---cCCCEEEeecCchhh-----hHHHHHHHhhhh---h
Q psy2071 65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYS--K---SVGAKAVACTQPRRV-----AAMSVAQRVSEE---M 131 (302)
Q Consensus 65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~--~---~~G~~~i~~~~~~~~-----~~~~~~~~~~~~---~ 131 (302)
.+++++++.|.+|++++|+|+||||||||+++|+|+.+ | ++|++.++|...... ........+.+. +
T Consensus 19 ~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 98 (252)
T PRK14255 19 EALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQPNPF 98 (252)
T ss_pred eEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHHhcCeEEEEECCCccC
Confidence 35789999999999999999999999999999999865 4 489999988643210 000000011110 1
Q ss_pred ccccccceeeeeee-------------------cCC-----CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCC
Q psy2071 132 DCQLGQEVGYSIRF-------------------EDC-----SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHER 187 (302)
Q Consensus 132 ~~~~~~~v~~~~~~-------------------~~~-----~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p 187 (302)
..++.+++.+.... ... ...+..+..||+||+||++||++|+.+|+++|||| |
T Consensus 99 ~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDE---P 175 (252)
T PRK14255 99 PFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDE---P 175 (252)
T ss_pred CCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcC---C
Confidence 12333332221100 000 11234567799999999999999999999999999 9
Q ss_pred CcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 188 TLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 188 ~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
++++|+.. ..+.+++....+ +.|+|++||+++.+.++||++++|+ .|+.
T Consensus 176 t~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~~~~~~~d~i~~l~-~G~i 225 (252)
T PRK14255 176 TSALDPISSTQIENMLLELRD-QYTIILVTHSMHQASRISDKTAFFL-TGNL 225 (252)
T ss_pred CccCCHHHHHHHHHHHHHHHh-CCEEEEEECCHHHHHHhCCEEEEEE-CCEE
Confidence 99999887 778888876654 4799999999999999999999998 6654
No 276
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.95 E-value=6.7e-29 Score=201.20 Aligned_cols=181 Identities=16% Similarity=0.235 Sum_probs=129.6
Q ss_pred hhHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHH---hhhhh------cc
Q psy2071 63 VFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQR---VSEEM------DC 133 (302)
Q Consensus 63 ~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~---~~~~~------~~ 133 (302)
.+.+.+.++|.+++|+.++++|.||||||||.++++|.++|++|++.+++.....-.+.+.++. +++.+ ..
T Consensus 25 ~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~~R~k~IRMiFQDpnts~NPRl 104 (267)
T COG4167 25 TVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRL 104 (267)
T ss_pred hhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchHhhhhheeeeecCCccccChhh
Confidence 5667889999999999999999999999999999999999999999999875432222222211 11111 11
Q ss_pred ccccceeeeeeecCCC---------------------CccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchH
Q psy2071 134 QLGQEVGYSIRFEDCS---------------------SPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATD 192 (302)
Q Consensus 134 ~~~~~v~~~~~~~~~~---------------------~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD 192 (302)
.+++-+..+++..... ..+-.+..||.||+|||++||||+.+|++||.|| ...++|
T Consensus 105 ~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRVaLARALIL~P~iIIaDe---Al~~LD 181 (267)
T COG4167 105 RIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALARALILRPKIIIADE---ALASLD 181 (267)
T ss_pred hhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHHHHHHHHhcCCcEEEehh---hhhhcc
Confidence 2222222222221111 1122345599999999999999999999999999 789999
Q ss_pred HHH-HHHHHH-HHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCc----CCccceeecC
Q psy2071 193 ILM-GVLKEV-IKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGR----THPVEIFYTP 247 (302)
Q Consensus 193 ~~~-~~l~~l-l~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~----~~~~~~~~~~ 247 (302)
..+ ..+.++ +....+.|+..|.++.++..+..++|.|+||+ +|. +.+.+++..|
T Consensus 182 ~smrsQl~NL~LeLQek~GiSyiYV~QhlG~iKHi~D~viVM~-EG~vvE~G~t~~v~a~P 241 (267)
T COG4167 182 MSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMH-EGEVVERGSTADVLASP 241 (267)
T ss_pred HHHHHHHHHHHHHHHHHhCceEEEEechhhHhhhhcccEEEEe-cCceeecCChhhhhcCC
Confidence 776 444444 44455679999999999999999999999999 664 3444444433
No 277
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.95 E-value=1.6e-28 Score=217.35 Aligned_cols=167 Identities=11% Similarity=0.129 Sum_probs=122.4
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHH---hhh---hhccccccce
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQR---VSE---EMDCQLGQEV 139 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~---~~~---~~~~~~~~~v 139 (302)
+.+++++.|++|++++|+|+||||||||+++|+|+++|++|++.+.|.............. +.+ .+..++.+++
T Consensus 36 il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~i~~v~q~~~l~~~tv~~nl 115 (257)
T cd03288 36 VLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSRLSIILQDPILFSGSIRFNL 115 (257)
T ss_pred ceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhhhEEEECCCCcccccHHHHhc
Confidence 5789999999999999999999999999999999999999999998865432111111111 111 1111222222
Q ss_pred eeeee--------------ec---------CCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-
Q psy2071 140 GYSIR--------------FE---------DCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM- 195 (302)
Q Consensus 140 ~~~~~--------------~~---------~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~- 195 (302)
..... +. ...........||+||+||+++|+||+.+|++||||| |+.++|+..
T Consensus 116 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDE---Pt~gLD~~~~ 192 (257)
T cd03288 116 DPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDE---ATASIDMATE 192 (257)
T ss_pred CcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeC---CccCCCHHHH
Confidence 21100 00 0000112346799999999999999999999999999 999999887
Q ss_pred HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 196 GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 196 ~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
..+.+++....+ +.|++++||+++.+.. ||++++|+ .|+.
T Consensus 193 ~~l~~~l~~~~~-~~tiii~sh~~~~~~~-~dri~~l~-~G~i 232 (257)
T cd03288 193 NILQKVVMTAFA-DRTVVTIAHRVSTILD-ADLVLVLS-RGIL 232 (257)
T ss_pred HHHHHHHHHhcC-CCEEEEEecChHHHHh-CCEEEEEE-CCEE
Confidence 778888876544 7899999999999975 99999998 6664
No 278
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.95 E-value=6.6e-29 Score=226.57 Aligned_cols=153 Identities=18% Similarity=0.209 Sum_probs=114.4
Q ss_pred EEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhH-----HHHHHHhhhhhccccccceeeeeeecC---------
Q psy2071 82 LVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAA-----MSVAQRVSEEMDCQLGQEVGYSIRFED--------- 147 (302)
Q Consensus 82 liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~v~~~~~~~~--------- 147 (302)
|+||||||||||+++|+|+++|++|++.++|........ ..+.+........++.+++.+..+...
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~ 80 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIKPR 80 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHHHH
Confidence 689999999999999999999999999998865422110 011111112223455566554322110
Q ss_pred ----------CCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcC-CCcEEEEEE
Q psy2071 148 ----------CSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVIKQRA-DLKLVIMSA 215 (302)
Q Consensus 148 ----------~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~-~~~~~ii~~ 215 (302)
....++.+..|||||+||++|||||+.+|++||||| |++++|+.. ..+.+++.+.. +.+.|+|++
T Consensus 81 ~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDE---P~s~LD~~~~~~l~~~l~~l~~~~g~tiiiv 157 (325)
T TIGR01187 81 VLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDE---PLSALDKKLRDQMQLELKTIQEQLGITFVFV 157 (325)
T ss_pred HHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeC---CCccCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 011345567799999999999999999999999999 999999887 77777777654 348899999
Q ss_pred ecCHHHHHhhccCCCeeeecCcC
Q psy2071 216 TLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 216 thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
|||++++..+||++++|+ .|+.
T Consensus 158 THd~~e~~~~~d~i~vl~-~G~i 179 (325)
T TIGR01187 158 THDQEEAMTMSDRIAIMR-KGKI 179 (325)
T ss_pred eCCHHHHHHhCCEEEEEE-CCEE
Confidence 999999999999999998 5553
No 279
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=3.9e-29 Score=221.16 Aligned_cols=173 Identities=14% Similarity=0.177 Sum_probs=125.4
Q ss_pred CChhHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEee------cCchhhhHHHH-------HHHh
Q psy2071 61 LPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVAC------TQPRRVAAMSV-------AQRV 127 (302)
Q Consensus 61 lp~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~------~~~~~~~~~~~-------~~~~ 127 (302)
++...+++++++.|.+|++++|+|+||||||||+++|+|++.|++|++.+.| .+......... .+..
T Consensus 20 ~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~~~~~i~~~~q~~ 99 (257)
T PRK14246 20 INDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKLRKEVGMVFQQP 99 (257)
T ss_pred cCCceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHHHhcceEEEccCC
Confidence 3334468999999999999999999999999999999999999998776655 22211110000 1111
Q ss_pred hhhhccccccceeeeee-------------------ecCC-----CCccccccccCHHHHHHHhccccCCCCCcEEEEcC
Q psy2071 128 SEEMDCQLGQEVGYSIR-------------------FEDC-----SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDE 183 (302)
Q Consensus 128 ~~~~~~~~~~~v~~~~~-------------------~~~~-----~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE 183 (302)
......++.+++.+... .... ...+.....||+||+||++||+||+.+|+++||||
T Consensus 100 ~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~P~llllDE 179 (257)
T PRK14246 100 NPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDE 179 (257)
T ss_pred ccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEcC
Confidence 11112233333332110 0000 01234567799999999999999999999999999
Q ss_pred CCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 184 AHERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 184 ~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
|+.++|... ..+.+++.+..+ +.||+++||+.+.+..+||++++|+ .|+.
T Consensus 180 ---Pt~~LD~~~~~~l~~~l~~~~~-~~tiilvsh~~~~~~~~~d~v~~l~-~g~i 230 (257)
T PRK14246 180 ---PTSMIDIVNSQAIEKLITELKN-EIAIVIVSHNPQQVARVADYVAFLY-NGEL 230 (257)
T ss_pred ---CCccCCHHHHHHHHHHHHHHhc-CcEEEEEECCHHHHHHhCCEEEEEE-CCEE
Confidence 999999887 788888887654 5899999999999999999999998 6653
No 280
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=5.2e-29 Score=220.82 Aligned_cols=164 Identities=15% Similarity=0.128 Sum_probs=122.8
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccc-----cCCCEEEeecCchhh--h---HHHHHHHhhh---hhc
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSK-----SVGAKAVACTQPRRV--A---AMSVAQRVSE---EMD 132 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~-----~~G~~~i~~~~~~~~--~---~~~~~~~~~~---~~~ 132 (302)
+++++++.|++|++++|+|+||||||||+++|+|+++| ++|++.+.|.+.... . .......+.+ .+.
T Consensus 23 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~ 102 (261)
T PRK14263 23 AVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQPNPFS 102 (261)
T ss_pred EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHhhhhceEEEecCCcccc
Confidence 57889999999999999999999999999999999986 789999988754210 0 0000111111 112
Q ss_pred cccccceeeeeee-----------------cCCC-----CccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcc
Q psy2071 133 CQLGQEVGYSIRF-----------------EDCS-----SPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLA 190 (302)
Q Consensus 133 ~~~~~~v~~~~~~-----------------~~~~-----~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~ 190 (302)
.++.+++.+.... .... ..+.....||+||+||++||+||+.+|++||||| |+++
T Consensus 103 ~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE---Ptsg 179 (261)
T PRK14263 103 MSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAIATEPEVLLLDE---PCSA 179 (261)
T ss_pred ccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC---CCcc
Confidence 3444444322100 0000 1123456799999999999999999999999999 9999
Q ss_pred hHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeee
Q psy2071 191 TDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMN 233 (302)
Q Consensus 191 lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~ 233 (302)
+|+.. ..+.+++.+..+ +.|++++||+++++.++||++++|+
T Consensus 180 LD~~~~~~l~~~l~~~~~-~~tii~isH~~~~i~~~~d~v~~l~ 222 (261)
T PRK14263 180 LDPIATRRVEELMVELKK-DYTIALVTHNMQQAIRVADTTAFFS 222 (261)
T ss_pred CCHHHHHHHHHHHHHHhc-CCeEEEEeCCHHHHHHhCCEEEEEe
Confidence 99887 788888887654 6899999999999999999999995
No 281
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=4.4e-29 Score=223.88 Aligned_cols=169 Identities=15% Similarity=0.208 Sum_probs=123.0
Q ss_pred HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhccc-----ccCCCEEEeecCchhh--hHHHHH---HHhhhh---h
Q psy2071 65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYS-----KSVGAKAVACTQPRRV--AAMSVA---QRVSEE---M 131 (302)
Q Consensus 65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~-----~~~G~~~i~~~~~~~~--~~~~~~---~~~~~~---~ 131 (302)
.+++++++.|++|++++|+|+||||||||+++|+|+++ |++|.+.+.|...... ...... ..+.+. +
T Consensus 53 ~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~i~~v~q~~~l~ 132 (285)
T PRK14254 53 QALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPVALRRRIGMVFQKPNPF 132 (285)
T ss_pred eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccchHhhhccEEEEecCCccC
Confidence 46899999999999999999999999999999999986 6899999988653210 000000 011111 1
Q ss_pred ccccccceeeeee-----------------ecCC-----CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCc
Q psy2071 132 DCQLGQEVGYSIR-----------------FEDC-----SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTL 189 (302)
Q Consensus 132 ~~~~~~~v~~~~~-----------------~~~~-----~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~ 189 (302)
..++.+++.+... .... ...+..+..||+||+||++||+||+.+|++||||| |++
T Consensus 133 ~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LAraL~~~p~lLLLDE---Pts 209 (285)
T PRK14254 133 PKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDE---PAS 209 (285)
T ss_pred cCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC---CCC
Confidence 1133333322110 0000 01245567899999999999999999999999999 999
Q ss_pred chHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCC-eeeecCcC
Q psy2071 190 ATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAP-LMNVPGRT 238 (302)
Q Consensus 190 ~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~-~l~i~g~~ 238 (302)
++|+.. ..+.++++...+ +.|||++||+.+++..+||+++ +|+ .|+.
T Consensus 210 ~LD~~~~~~l~~~L~~~~~-~~tiii~tH~~~~i~~~~dri~v~l~-~G~i 258 (285)
T PRK14254 210 ALDPVATSKIEDLIEELAE-EYTVVIVTHNMQQAARISDKTAVFLT-GGEL 258 (285)
T ss_pred CCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHhhcCEEEEEee-CCEE
Confidence 999887 778888887655 3689999999999999999975 456 5653
No 282
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=6.5e-29 Score=220.05 Aligned_cols=164 Identities=16% Similarity=0.148 Sum_probs=121.5
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccc-----cCCCEEEeecCchh--hh---HHHHHHHhhhh---hc
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSK-----SVGAKAVACTQPRR--VA---AMSVAQRVSEE---MD 132 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~-----~~G~~~i~~~~~~~--~~---~~~~~~~~~~~---~~ 132 (302)
+.+++++.|++|++++|+|+||||||||+++|+|+++| ++|++.++|..... .. .......+.+. ..
T Consensus 22 il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~ 101 (259)
T PRK14260 22 AIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININRLRRQIGMVFQRPNPFP 101 (259)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHhhhhheEEEecccccCC
Confidence 57899999999999999999999999999999999885 47999998864321 00 00000111111 11
Q ss_pred cccccceeeeeee-------------------cCC-----CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCC
Q psy2071 133 CQLGQEVGYSIRF-------------------EDC-----SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERT 188 (302)
Q Consensus 133 ~~~~~~v~~~~~~-------------------~~~-----~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~ 188 (302)
.++.+++.+.... ... ...++....||+||+||++||+||+.+|++||||| |+
T Consensus 102 ~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDE---Pt 178 (259)
T PRK14260 102 MSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDE---PC 178 (259)
T ss_pred ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcC---CC
Confidence 2333333221100 000 11234567799999999999999999999999999 99
Q ss_pred cchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeee
Q psy2071 189 LATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMN 233 (302)
Q Consensus 189 ~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~ 233 (302)
+++|+.. ..+.+++....+ +.|++++||+++++.++||++++|+
T Consensus 179 ~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~~i~~~~d~i~~l~ 223 (259)
T PRK14260 179 SALDPIATMKVEELIHSLRS-ELTIAIVTHNMQQATRVSDFTAFFS 223 (259)
T ss_pred ccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhcCeEEEEe
Confidence 9999887 778888877655 5899999999999999999999997
No 283
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.94 E-value=9.1e-29 Score=212.42 Aligned_cols=164 Identities=15% Similarity=0.173 Sum_probs=130.6
Q ss_pred HHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecC-------------chhhhHHHHHHHhhhhhcccc
Q psy2071 69 EFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQ-------------PRRVAAMSVAQRVSEEMDCQL 135 (302)
Q Consensus 69 ~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~-------------~~~~~~~~~~~~~~~~~~~~~ 135 (302)
++++.++...+++|.|++|||||||+|+|+|+..|+.|.|.++|.- .++++++++..+. ++..++
T Consensus 16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARL--FpH~tV 93 (352)
T COG4148 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARL--FPHYTV 93 (352)
T ss_pred EEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeecccc--ccceEE
Confidence 3566777778999999999999999999999999999999988742 1333433333333 456688
Q ss_pred ccceeeeeeecCCC-------------CccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHH
Q psy2071 136 GQEVGYSIRFEDCS-------------SPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEV 201 (302)
Q Consensus 136 ~~~v~~~~~~~~~~-------------~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~l 201 (302)
..|+.|...+.... ..++....||||+||||+|+|||+..|++|+||| |.+++|... ..+.-.
T Consensus 94 rgNL~YG~~~~~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDE---PLaSLD~~RK~Eilpy 170 (352)
T COG4148 94 RGNLRYGMWKSMRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDE---PLASLDLPRKREILPY 170 (352)
T ss_pred ecchhhhhcccchHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecC---chhhcccchhhHHHHH
Confidence 88888877554221 1245567799999999999999999999999999 999999655 566666
Q ss_pred HHHc-CCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 202 IKQR-ADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 202 l~~~-~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
++++ .+.++-|+.+||.++++.+++|++++|. .|+.
T Consensus 171 lERL~~e~~IPIlYVSHS~~Ev~RLAd~vV~le-~GkV 207 (352)
T COG4148 171 LERLRDEINIPILYVSHSLDEVLRLADRVVVLE-NGKV 207 (352)
T ss_pred HHHHHHhcCCCEEEEecCHHHHHhhhheEEEec-CCeE
Confidence 6654 4568999999999999999999999999 6654
No 284
>PRK13409 putative ATPase RIL; Provisional
Probab=99.94 E-value=8.4e-29 Score=241.50 Aligned_cols=158 Identities=16% Similarity=0.124 Sum_probs=118.7
Q ss_pred HHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhhccccccceeee----
Q psy2071 67 RTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYS---- 142 (302)
Q Consensus 67 ~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~---- 142 (302)
++++++.|++||+++|+||||||||||+++|+|+++|++|.+.+.. .++... +........++.+++.+.
T Consensus 355 l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~~----~i~y~~--Q~~~~~~~~tv~e~l~~~~~~~ 428 (590)
T PRK13409 355 LEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPEL----KISYKP--QYIKPDYDGTVEDLLRSITDDL 428 (590)
T ss_pred EEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEee----eEEEec--ccccCCCCCcHHHHHHHHhhhc
Confidence 5678899999999999999999999999999999999999887641 111100 000001111222222110
Q ss_pred ---------e-eecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcCC-CcE
Q psy2071 143 ---------I-RFEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVIKQRAD-LKL 210 (302)
Q Consensus 143 ---------~-~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~-~~~ 210 (302)
+ .+......++.+..|||||+||++||++|+.+|++||||| ||+++|+.. ..+.+++++..+ .+.
T Consensus 429 ~~~~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDE---Pt~~LD~~~~~~l~~~l~~l~~~~g~ 505 (590)
T PRK13409 429 GSSYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDE---PSAHLDVEQRLAVAKAIRRIAEEREA 505 (590)
T ss_pred ChHHHHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC---CccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 0 0111122456778899999999999999999999999999 999999887 778888887644 478
Q ss_pred EEEEEecCHHHHHhhccCCCeee
Q psy2071 211 VIMSATLDAGKFQQYFDNAPLMN 233 (302)
Q Consensus 211 ~ii~~thd~~~~~~~~d~~~~l~ 233 (302)
|+|++|||++++..+||++++|+
T Consensus 506 tviivsHD~~~~~~~aDrvivl~ 528 (590)
T PRK13409 506 TALVVDHDIYMIDYISDRLMVFE 528 (590)
T ss_pred EEEEEeCCHHHHHHhCCEEEEEc
Confidence 99999999999999999999986
No 285
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.94 E-value=9.2e-29 Score=221.75 Aligned_cols=179 Identities=18% Similarity=0.202 Sum_probs=136.4
Q ss_pred hHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHH---HH---HHHhh------hhh
Q psy2071 64 FEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAM---SV---AQRVS------EEM 131 (302)
Q Consensus 64 ~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~---~~---~~~~~------~~~ 131 (302)
+.+.+++++.+.+|+.++|+|++|||||||-..++.++++. |.|.+.|++....... .+ .+-|+ ..+
T Consensus 300 ~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsP 378 (534)
T COG4172 300 LRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSP 378 (534)
T ss_pred eEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCc
Confidence 44689999999999999999999999999999999998866 9999999875432211 11 12222 233
Q ss_pred ccccccceeeeeeecCCC----------------------CccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCc
Q psy2071 132 DCQLGQEVGYSIRFEDCS----------------------SPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTL 189 (302)
Q Consensus 132 ~~~~~~~v~~~~~~~~~~----------------------~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~ 189 (302)
.+++++-++..+..+... ..++...++||||+||++||||++.+|++++||| ||+
T Consensus 379 RmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQRIAIARAliLkP~~i~LDE---PTS 455 (534)
T COG4172 379 RMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARALILKPELILLDE---PTS 455 (534)
T ss_pred ccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhhHHHHHHHHhcCCcEEEecC---Cch
Confidence 456666666666544321 1233456699999999999999999999999999 999
Q ss_pred chHHHH-HHHHHHHHHc-CCCcEEEEEEecCHHHHHhhccCCCeeeecCc----CCccceeecC
Q psy2071 190 ATDILM-GVLKEVIKQR-ADLKLVIMSATLDAGKFQQYFDNAPLMNVPGR----THPVEIFYTP 247 (302)
Q Consensus 190 ~lD~~~-~~l~~ll~~~-~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~----~~~~~~~~~~ 247 (302)
++|... ..+.++++.+ .+.+.+.+++|||+..+..+||+++||+ .|+ +...++|..|
T Consensus 456 ALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~-~GkiVE~G~~~~if~~P 518 (534)
T COG4172 456 ALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMR-DGKIVEQGPTEAVFANP 518 (534)
T ss_pred HhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhceEEEEe-CCEEeeeCCHHHHhcCC
Confidence 999766 7777777754 3568999999999999999999999999 554 3344444444
No 286
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.94 E-value=1.8e-28 Score=218.28 Aligned_cols=166 Identities=13% Similarity=0.164 Sum_probs=121.3
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHh---hh---hhccccccce
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRV---SE---EMDCQLGQEV 139 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~---~~---~~~~~~~~~v 139 (302)
+++++++.|++|++++|+|+||||||||+++|+|+++ ++|.+.++|.+............+ .+ .+..++.+++
T Consensus 19 ~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i~~v~q~~~lf~~tv~~nl 97 (275)
T cd03289 19 VLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAFGVIPQKVFIFSGTFRKNL 97 (275)
T ss_pred ceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhEEEECCCcccchhhHHHHh
Confidence 5899999999999999999999999999999999997 789999998765332211111111 11 1112344444
Q ss_pred eeeeeec-----------CC-CCccccc-----------cccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-
Q psy2071 140 GYSIRFE-----------DC-SSPKTVL-----------KYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM- 195 (302)
Q Consensus 140 ~~~~~~~-----------~~-~~~~~~~-----------~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~- 195 (302)
.+.-... .. ...+..+ ..||+||+||++||||++.+|++||||| |++++|+..
T Consensus 98 ~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~illlDE---pts~LD~~~~ 174 (275)
T cd03289 98 DPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDE---PSAHLDPITY 174 (275)
T ss_pred hhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEEC---ccccCCHHHH
Confidence 2110000 00 0001111 2499999999999999999999999999 999999887
Q ss_pred HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 196 GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 196 ~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
..+.+++..... +.|||++||+++.+.. ||++++|+ .|+.
T Consensus 175 ~~l~~~l~~~~~-~~tii~isH~~~~i~~-~dri~vl~-~G~i 214 (275)
T cd03289 175 QVIRKTLKQAFA-DCTVILSEHRIEAMLE-CQRFLVIE-ENKV 214 (275)
T ss_pred HHHHHHHHHhcC-CCEEEEEECCHHHHHh-CCEEEEec-CCeE
Confidence 778888876543 7899999999998875 99999998 6654
No 287
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.94 E-value=5.5e-28 Score=204.93 Aligned_cols=172 Identities=16% Similarity=0.203 Sum_probs=127.8
Q ss_pred hhHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhH-HHHHHHh---hhhh------c
Q psy2071 63 VFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAA-MSVAQRV---SEEM------D 132 (302)
Q Consensus 63 ~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~-~~~~~~~---~~~~------~ 132 (302)
...++++|+.+|++||.++|+||||||||||+++++|.++|++|.+.+.|....+... ..+.+++ +.+. .
T Consensus 43 gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk~IG~vS~~L~~~~~~~ 122 (257)
T COG1119 43 GKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKRIGLVSSELHERFRVR 122 (257)
T ss_pred CEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHHHhCccCHHHHhhcccc
Confidence 3456899999999999999999999999999999999999999999998876543332 1222211 1111 1
Q ss_pred cccccce--------eeee----------------eecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCC
Q psy2071 133 CQLGQEV--------GYSI----------------RFEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERT 188 (302)
Q Consensus 133 ~~~~~~v--------~~~~----------------~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~ 188 (302)
.++.+-| |..- .+......++....||-||+||+.|||||+.+|.+||||| |+
T Consensus 123 ~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rrvLiaRALv~~P~LLiLDE---P~ 199 (257)
T COG1119 123 ETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALVKDPELLILDE---PA 199 (257)
T ss_pred cccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHHHHHHHHHhcCCCEEEecC---cc
Confidence 1222221 1110 0111113455667799999999999999999999999999 99
Q ss_pred cchHHHH-HHHHHHHHHcCCC--cEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 189 LATDILM-GVLKEVIKQRADL--KLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 189 ~~lD~~~-~~l~~ll~~~~~~--~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
.++|... ..+.+.+...... +.++++|||..+++-..++++..++ +|+.
T Consensus 200 ~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~lll~-~g~v 251 (257)
T COG1119 200 QGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLK-EGEV 251 (257)
T ss_pred ccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEEEee-CCce
Confidence 9999877 5666666655433 7899999999999999999999998 6653
No 288
>KOG0926|consensus
Probab=99.94 E-value=1.4e-26 Score=220.76 Aligned_cols=230 Identities=40% Similarity=0.650 Sum_probs=193.3
Q ss_pred hhhHHHHHhhcCCChhHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhc---ccccCC-CEEEeecCchhhhHHHHH
Q psy2071 49 PRYHELHRKRITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVE---YSKSVG-AKAVACTQPRRVAAMSVA 124 (302)
Q Consensus 49 ~~~~~l~~~r~~lp~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~---~~~~~G-~~~i~~~~~~~~~~~~~~ 124 (302)
+|-.|+.+.|..||++.-.+.|..+|+.+.++.|.|.+||||||++++++-. -.+.+- ...|.-++|||++++.++
T Consensus 243 ~R~~EIQ~sR~~LPI~aeEq~IMEaIn~n~vvIIcGeTGsGKTTQvPQFLYEAGf~s~~~~~~gmIGITqPRRVAaiamA 322 (1172)
T KOG0926|consen 243 SRPAEIQESRLDLPIVAEEQRIMEAINENPVVIICGETGSGKTTQVPQFLYEAGFASEQSSSPGMIGITQPRRVAAIAMA 322 (1172)
T ss_pred cCcHHHHHHHhcCchhHHHHHHHHHhhcCCeEEEecCCCCCccccchHHHHHcccCCccCCCCCeeeecCchHHHHHHHH
Confidence 4556899999999999999999999999999999999999999999998533 222111 234566899999999999
Q ss_pred HHhhhhhccccccceeeeeeecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHHHHHHHHHHH
Q psy2071 125 QRVSEEMDCQLGQEVGYSIRFEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILMGVLKEVIKQ 204 (302)
Q Consensus 125 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~~~l~~ll~~ 204 (302)
++|+.+++. .+..|+|.+||+.....++.+.+|++|.+.|..-.+-|+..+++||+|||||+..++|.+.++|..++..
T Consensus 323 kRVa~EL~~-~~~eVsYqIRfd~ti~e~T~IkFMTDGVLLrEi~~DflL~kYSvIIlDEAHERSvnTDILiGmLSRiV~L 401 (1172)
T KOG0926|consen 323 KRVAFELGV-LGSEVSYQIRFDGTIGEDTSIKFMTDGVLLREIENDFLLTKYSVIILDEAHERSVNTDILIGMLSRIVPL 401 (1172)
T ss_pred HHHHHHhcc-CccceeEEEEeccccCCCceeEEecchHHHHHHHHhHhhhhceeEEechhhhccchHHHHHHHHHHHHHH
Confidence 999999987 8899999999999999999999999999999999999999999999999999999999999998888764
Q ss_pred cC----------CCcEEEEEEecCHHHHH---hhccC-CCeeeecCcCCccceeecCCCCCCC----------------C
Q psy2071 205 RA----------DLKLVIMSATLDAGKFQ---QYFDN-APLMNVPGRTHPVEIFYTPEPPLGA----------------G 254 (302)
Q Consensus 205 ~~----------~~~~~ii~~thd~~~~~---~~~d~-~~~l~i~g~~~~~~~~~~~~~~~~~----------------~ 254 (302)
+. -++.+||++|.-++.+. .+|-- -++|.++.|.|||.+++......+| .
T Consensus 402 R~k~~ke~~~~kpLKLIIMSATLRVsDFtenk~LFpi~pPlikVdARQfPVsIHF~krT~~DYi~eAfrKtc~IH~kLP~ 481 (1172)
T KOG0926|consen 402 RQKYYKEQCQIKPLKLIIMSATLRVSDFTENKRLFPIPPPLIKVDARQFPVSIHFNKRTPDDYIAEAFRKTCKIHKKLPP 481 (1172)
T ss_pred HHHHhhhhcccCceeEEEEeeeEEecccccCceecCCCCceeeeecccCceEEEeccCCCchHHHHHHHHHHHHhhcCCC
Confidence 32 35889999999776665 23332 3578899999999999987765432 2
Q ss_pred CCCcccccCchhHHHHhhHHHhHhh
Q psy2071 255 PWLPQCFTRPNEAKKAADDAKMRFA 279 (302)
Q Consensus 255 ~~l~~~~~~~~~~~~~~~~~~~~~~ 279 (302)
..+-+|.+++.+....+..++.+|.
T Consensus 482 G~ILVFvTGQqEV~qL~~kLRK~~p 506 (1172)
T KOG0926|consen 482 GGILVFVTGQQEVDQLCEKLRKRFP 506 (1172)
T ss_pred CcEEEEEeChHHHHHHHHHHHhhCc
Confidence 2334678889999999988888764
No 289
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.94 E-value=1.4e-28 Score=241.81 Aligned_cols=167 Identities=19% Similarity=0.204 Sum_probs=129.0
Q ss_pred HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHh---hh---hhccccccc
Q psy2071 65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRV---SE---EMDCQLGQE 138 (302)
Q Consensus 65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~---~~---~~~~~~~~~ 138 (302)
.+++++++.|++|+.++|+|+||||||||+++|+|++ |++|++.++|.+..........+.+ .+ .++.++.+|
T Consensus 364 ~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eN 442 (588)
T PRK11174 364 TLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDN 442 (588)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHH
Confidence 3589999999999999999999999999999999999 9999999999876554433333322 22 345577777
Q ss_pred eeeeee-ecC------------------C-CCccccc----cccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHH
Q psy2071 139 VGYSIR-FED------------------C-SSPKTVL----KYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDIL 194 (302)
Q Consensus 139 v~~~~~-~~~------------------~-~~~~~~~----~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~ 194 (302)
+.+.-. ... . ...++.+ ..||||||||++||||++.+|++||||| ||+++|..
T Consensus 443 I~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~~IliLDE---~TSaLD~~ 519 (588)
T PRK11174 443 VLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDE---PTASLDAH 519 (588)
T ss_pred hhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC---CccCCCHH
Confidence 776521 100 0 0113333 3599999999999999999999999999 99999988
Q ss_pred H-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 195 M-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 195 ~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
. ..+.+.+....+ +.|+|++||.++.+. .||++++|+ .|+.
T Consensus 520 te~~i~~~l~~~~~-~~TvIiItHrl~~i~-~aD~Iivl~-~G~i 561 (588)
T PRK11174 520 SEQLVMQALNAASR-RQTTLMVTHQLEDLA-QWDQIWVMQ-DGQI 561 (588)
T ss_pred HHHHHHHHHHHHhC-CCEEEEEecChHHHH-hCCEEEEEe-CCeE
Confidence 8 667777766533 678999999998775 599999998 6653
No 290
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.94 E-value=3.8e-29 Score=212.93 Aligned_cols=154 Identities=13% Similarity=0.063 Sum_probs=112.1
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHH------HHHHHhhhhhccccccce
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAM------SVAQRVSEEMDCQLGQEV 139 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~------~~~~~~~~~~~~~~~~~v 139 (302)
+.+++++.|++|++++|+||||||||||+++|+|+++|++|++.++|.+....... .+.+........++.+++
T Consensus 15 ~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l 94 (198)
T TIGR01189 15 LFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNILYLGHLPGLKPELSALENL 94 (198)
T ss_pred EEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccchHHhhhheEEeccCcccccCCcHHHHH
Confidence 57889999999999999999999999999999999999999999988653221100 000110001112333333
Q ss_pred eeeeee---------------cCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHH
Q psy2071 140 GYSIRF---------------EDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVIK 203 (302)
Q Consensus 140 ~~~~~~---------------~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~ 203 (302)
.+.... ......++.+..||+||+||++||+|++.+|++||||| |++++|+.. ..+.+++.
T Consensus 95 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDE---Pt~~LD~~~~~~l~~~l~ 171 (198)
T TIGR01189 95 HFWAAIHGGAQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDE---PTTALDKAGVALLAGLLR 171 (198)
T ss_pred HHHHHHcCCcHHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeC---CCcCCCHHHHHHHHHHHH
Confidence 221100 00011245667799999999999999999999999999 999999877 77888887
Q ss_pred HcCCCcEEEEEEecCHHHH
Q psy2071 204 QRADLKLVIMSATLDAGKF 222 (302)
Q Consensus 204 ~~~~~~~~ii~~thd~~~~ 222 (302)
...+.+.|+|++||+...+
T Consensus 172 ~~~~~~~tii~~sH~~~~~ 190 (198)
T TIGR01189 172 AHLARGGIVLLTTHQDLGL 190 (198)
T ss_pred HHHhCCCEEEEEEcccccc
Confidence 6655578999999987544
No 291
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=4.6e-28 Score=227.31 Aligned_cols=174 Identities=17% Similarity=0.185 Sum_probs=133.1
Q ss_pred cCCChh-HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHH---hhh---hh
Q psy2071 59 ITLPVF-EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQR---VSE---EM 131 (302)
Q Consensus 59 ~~lp~~-~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~---~~~---~~ 131 (302)
...|.- ....++++++++|+.++|+|+||||||||++.|+|+.+|+.|++.++|.+.+........++ +.+ .+
T Consensus 328 ~~y~~g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf 407 (559)
T COG4988 328 FRYPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLF 407 (559)
T ss_pred EecCCCCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCCCCccc
Confidence 344544 56899999999999999999999999999999999999999999999987655443333322 222 23
Q ss_pred ccccccceeeeeeec------------------C-CCCccccccc----cCHHHHHHHhccccCCCCCcEEEEcCCCCCC
Q psy2071 132 DCQLGQEVGYSIRFE------------------D-CSSPKTVLKY----MTDGMLLREGMSDPMLENYQVILLDEAHERT 188 (302)
Q Consensus 132 ~~~~~~~v~~~~~~~------------------~-~~~~~~~~~~----lS~G~~qr~~la~al~~~p~lliLDE~~~p~ 188 (302)
..++++|+.+.-... . ....++.+.. |||||+||+++||||+.+++++|+|| ||
T Consensus 408 ~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llDE---pT 484 (559)
T COG4988 408 AGTIRENILLARPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDE---PT 484 (559)
T ss_pred cccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEecC---Cc
Confidence 445666664432110 0 1122444544 99999999999999999999999999 99
Q ss_pred cchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 189 LATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 189 ~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
+++|... ..+.+.+.+..+. .|++++||++..+. -+|+|++|+ .|+.
T Consensus 485 A~LD~etE~~i~~~l~~l~~~-ktvl~itHrl~~~~-~~D~I~vld-~G~l 532 (559)
T COG4988 485 AHLDAETEQIILQALQELAKQ-KTVLVITHRLEDAA-DADRIVVLD-NGRL 532 (559)
T ss_pred cCCCHhHHHHHHHHHHHHHhC-CeEEEEEcChHHHh-cCCEEEEec-CCce
Confidence 9999888 7777777776554 78888999998775 589999999 6653
No 292
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=8.2e-29 Score=219.64 Aligned_cols=165 Identities=14% Similarity=0.152 Sum_probs=121.0
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhccccc-----CCCEEEeecCch--hhhHHHHHH---Hhhh---hhc
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKS-----VGAKAVACTQPR--RVAAMSVAQ---RVSE---EMD 132 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~-----~G~~~i~~~~~~--~~~~~~~~~---~~~~---~~~ 132 (302)
+++++++.|++|++++|+|+||||||||+++|+|+++|+ .|.+.+.|.+.. ......... .+.+ .+.
T Consensus 22 il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~l~~ 101 (261)
T PRK14258 22 ILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLFP 101 (261)
T ss_pred EeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchHHhhccEEEEecCCccCc
Confidence 578999999999999999999999999999999999985 788888775431 111000000 0111 111
Q ss_pred cccccceeeeee-------------------ecCC-----CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCC
Q psy2071 133 CQLGQEVGYSIR-------------------FEDC-----SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERT 188 (302)
Q Consensus 133 ~~~~~~v~~~~~-------------------~~~~-----~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~ 188 (302)
.++.+++.+... .... ...++....||+||+||++||++|+.+|++||||| |+
T Consensus 102 ~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~vllLDE---P~ 178 (261)
T PRK14258 102 MSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDE---PC 178 (261)
T ss_pred ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC---CC
Confidence 233333322100 0000 01234557799999999999999999999999999 99
Q ss_pred cchHHHH-HHHHHHHHHcC-CCcEEEEEEecCHHHHHhhccCCCeee
Q psy2071 189 LATDILM-GVLKEVIKQRA-DLKLVIMSATLDAGKFQQYFDNAPLMN 233 (302)
Q Consensus 189 ~~lD~~~-~~l~~ll~~~~-~~~~~ii~~thd~~~~~~~~d~~~~l~ 233 (302)
+++|+.. ..+.+++.... +.+.|++++||+++++.++||++++|+
T Consensus 179 ~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~ 225 (261)
T PRK14258 179 FGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFK 225 (261)
T ss_pred ccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEc
Confidence 9999887 77778777643 347899999999999999999999998
No 293
>KOG0055|consensus
Probab=99.94 E-value=1.8e-28 Score=246.38 Aligned_cols=169 Identities=18% Similarity=0.260 Sum_probs=135.5
Q ss_pred hhHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHh---hh---hhccccc
Q psy2071 63 VFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRV---SE---EMDCQLG 136 (302)
Q Consensus 63 ~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~---~~---~~~~~~~ 136 (302)
...+++++++.|++|+.++|+|+|||||||++++|.+++.|++|+|.++|.+.+......+..++ .+ .+..++.
T Consensus 365 dv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~ 444 (1228)
T KOG0055|consen 365 DVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIR 444 (1228)
T ss_pred cchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhhcCeeeechhhhcccHH
Confidence 44678999999999999999999999999999999999999999999999987766555544433 22 3466788
Q ss_pred cceeeeeeecCCC--------------------Cccccc----cccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchH
Q psy2071 137 QEVGYSIRFEDCS--------------------SPKTVL----KYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATD 192 (302)
Q Consensus 137 ~~v~~~~~~~~~~--------------------~~~~~~----~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD 192 (302)
+|+.|........ ..++.+ -.||||||||++|||||+.+|++||||| +|++||
T Consensus 445 eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~P~ILLLDE---aTSaLD 521 (1228)
T KOG0055|consen 445 ENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPKILLLDE---ATSALD 521 (1228)
T ss_pred HHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHhCCCEEEecC---cccccC
Confidence 8888765221000 112222 2299999999999999999999999999 999999
Q ss_pred HHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCc
Q psy2071 193 ILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGR 237 (302)
Q Consensus 193 ~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~ 237 (302)
+.. ..+.+.+..... |.|.|+++|.+..+.. +|++++|+ .|.
T Consensus 522 ~~se~~Vq~ALd~~~~-grTTivVaHRLStIrn-aD~I~v~~-~G~ 564 (1228)
T KOG0055|consen 522 AESERVVQEALDKASK-GRTTIVVAHRLSTIRN-ADKIAVME-EGK 564 (1228)
T ss_pred HHHHHHHHHHHHHhhc-CCeEEEEeeehhhhhc-cCEEEEEE-CCE
Confidence 888 788888876654 5577777999999987 99999999 443
No 294
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=1.6e-28 Score=218.20 Aligned_cols=169 Identities=18% Similarity=0.228 Sum_probs=123.3
Q ss_pred HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccc-----cCCCEEEeecCch----hhhHHHHH---HHhhhh--
Q psy2071 65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSK-----SVGAKAVACTQPR----RVAAMSVA---QRVSEE-- 130 (302)
Q Consensus 65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~-----~~G~~~i~~~~~~----~~~~~~~~---~~~~~~-- 130 (302)
.+++++++.|++|++++|+|+||||||||+++|+|+..| ++|++.+.|.... ........ ..+.+.
T Consensus 30 ~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~ 109 (265)
T PRK14252 30 QALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDPIEVRMRISMVFQKPN 109 (265)
T ss_pred eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccccCHHHHhccEEEEccCCc
Confidence 468999999999999999999999999999999999875 6899998764321 00000000 011110
Q ss_pred -hccccccceeeeee-------------------ecCC-----CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCC
Q psy2071 131 -MDCQLGQEVGYSIR-------------------FEDC-----SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAH 185 (302)
Q Consensus 131 -~~~~~~~~v~~~~~-------------------~~~~-----~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~ 185 (302)
...++.+++.+... .... ...+.....||+||+||++||++|+.+|+++||||
T Consensus 110 ~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE-- 187 (265)
T PRK14252 110 PFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIARALATDPEILLFDE-- 187 (265)
T ss_pred CCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC--
Confidence 01133333322110 0000 01234557799999999999999999999999999
Q ss_pred CCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 186 ERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 186 ~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
|++++|+.. ..+.+++.+... +.|++++||+++++.++||++++|+ .|+.
T Consensus 188 -Pt~gLD~~~~~~l~~~l~~l~~-~~tiiivth~~~~~~~~~d~i~~l~-~G~i 238 (265)
T PRK14252 188 -PTSALDPIATASIEELISDLKN-KVTILIVTHNMQQAARVSDYTAYMY-MGEL 238 (265)
T ss_pred -CCccCCHHHHHHHHHHHHHHHh-CCEEEEEecCHHHHHHhCCEEEEEE-CCEE
Confidence 999999877 778888877654 5899999999999999999999998 6664
No 295
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.94 E-value=7.8e-29 Score=263.56 Aligned_cols=169 Identities=14% Similarity=0.086 Sum_probs=130.4
Q ss_pred HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhh-h-HHH----HHHHhhhhhccccccc
Q psy2071 65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRV-A-AMS----VAQRVSEEMDCQLGQE 138 (302)
Q Consensus 65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~-~-~~~----~~~~~~~~~~~~~~~~ 138 (302)
.+++++++.|++||+++|+|+||||||||+++|+|+++|++|++.+.|.+.... . ... ..+........++.++
T Consensus 1953 ~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~~~~~r~~IGy~pQ~~~L~~~LTv~E~ 2032 (2272)
T TIGR01257 1953 PAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNMGYCPQFDAIDDLLTGREH 2032 (2272)
T ss_pred eEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcchHHHHhhhEEEEeccccCCCCCCHHHH
Confidence 368999999999999999999999999999999999999999999998765321 0 000 0111111122344444
Q ss_pred eeeeeee-------------------cCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHH
Q psy2071 139 VGYSIRF-------------------EDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVL 198 (302)
Q Consensus 139 v~~~~~~-------------------~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l 198 (302)
+.+..+. +.....++.+..||||||||+++|+||+.+|++||||| |++++|+.. ..+
T Consensus 2033 L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~P~VLLLDE---PTsGLDp~sr~~l 2109 (2272)
T TIGR01257 2033 LYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDE---PTTGMDPQARRML 2109 (2272)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEEC---CCCCCCHHHHHHH
Confidence 4321111 01112355677899999999999999999999999999 999999988 788
Q ss_pred HHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCc
Q psy2071 199 KEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGR 237 (302)
Q Consensus 199 ~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~ 237 (302)
.+++....+.|.+||++||+++++..+||++++|+ .|+
T Consensus 2110 ~~lL~~l~~~g~TIILtTH~mee~e~lcDrV~IL~-~G~ 2147 (2272)
T TIGR01257 2110 WNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMV-KGA 2147 (2272)
T ss_pred HHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEE-CCE
Confidence 89888765558899999999999999999999998 554
No 296
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.94 E-value=7.6e-29 Score=210.55 Aligned_cols=155 Identities=10% Similarity=0.095 Sum_probs=112.5
Q ss_pred HHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhH---HHHHHHhhhhhccccccceeeee---
Q psy2071 70 FMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAA---MSVAQRVSEEMDCQLGQEVGYSI--- 143 (302)
Q Consensus 70 i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~---~~~~~~~~~~~~~~~~~~v~~~~--- 143 (302)
+++.|++|++++|+|+||||||||+++|+|+.+|++|++.++|.+...... ..+.+........++.+++.+..
T Consensus 19 vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~ 98 (195)
T PRK13541 19 LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTYIGHNLGLKLEMTVFENLKFWSEIY 98 (195)
T ss_pred EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhhhhhEEeccCCcCCCccCCHHHHHHHHHHhc
Confidence 788999999999999999999999999999999999999998865432110 00011111112233333332211
Q ss_pred ----------ee-cCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEE
Q psy2071 144 ----------RF-EDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVIKQRADLKLV 211 (302)
Q Consensus 144 ----------~~-~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ 211 (302)
.. ......++....||+||+||+++|+|++.+|+++|||| |++++|+.. ..+.+++....+.+.|
T Consensus 99 ~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDE---P~~~LD~~~~~~l~~~l~~~~~~~~t 175 (195)
T PRK13541 99 NSAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDE---VETNLSKENRDLLNNLIVMKANSGGI 175 (195)
T ss_pred ccHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeC---CcccCCHHHHHHHHHHHHHHHhCCCE
Confidence 00 00112345667899999999999999999999999999 999999887 7788888654455789
Q ss_pred EEEEecCHHHHHhhccC
Q psy2071 212 IMSATLDAGKFQQYFDN 228 (302)
Q Consensus 212 ii~~thd~~~~~~~~d~ 228 (302)
++++||+.+.+.. +|.
T Consensus 176 iii~sh~~~~i~~-~~~ 191 (195)
T PRK13541 176 VLLSSHLESSIKS-AQI 191 (195)
T ss_pred EEEEeCCccccch-hhe
Confidence 9999999987754 543
No 297
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=1.1e-28 Score=223.42 Aligned_cols=176 Identities=14% Similarity=0.144 Sum_probs=126.1
Q ss_pred hcCCChhHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhccc-----ccCCCEEEeecCchhhh-----HHHHHHHh
Q psy2071 58 RITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYS-----KSVGAKAVACTQPRRVA-----AMSVAQRV 127 (302)
Q Consensus 58 r~~lp~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~-----~~~G~~~i~~~~~~~~~-----~~~~~~~~ 127 (302)
...++...+++++++.|.+|++++|+|+||||||||+++|+|+++ |++|.+.+.|.+..... ......++
T Consensus 52 ~~~~~~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~~~~~~~i~~v 131 (305)
T PRK14264 52 DVYYGDDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLVELRKRVGMV 131 (305)
T ss_pred EEEeCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccHHHHhhceEEE
Confidence 333443446899999999999999999999999999999999986 68999999886542110 00001111
Q ss_pred hhh---hccccccceeeeeeec-------------------------------CC-----CCccccccccCHHHHHHHhc
Q psy2071 128 SEE---MDCQLGQEVGYSIRFE-------------------------------DC-----SSPKTVLKYMTDGMLLREGM 168 (302)
Q Consensus 128 ~~~---~~~~~~~~v~~~~~~~-------------------------------~~-----~~~~~~~~~lS~G~~qr~~l 168 (302)
.+. +..++.+++.+..... .. ...+.....||+||+||++|
T Consensus 132 ~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~L 211 (305)
T PRK14264 132 FQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNALGLSGGQQQRLCI 211 (305)
T ss_pred ccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCccccCCHHHHHHHHH
Confidence 111 1123333333211000 00 01133456799999999999
Q ss_pred cccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCC-eeeecCcC
Q psy2071 169 SDPMLENYQVILLDEAHERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAP-LMNVPGRT 238 (302)
Q Consensus 169 a~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~-~l~i~g~~ 238 (302)
|+||+.+|++||||| |++++|+.. ..+.+++....+ +.|+|++||+++.+..+||+++ +|+ .|+.
T Consensus 212 AraL~~~p~lLLLDE---PtsgLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~~i~~~~d~i~~~l~-~G~i 278 (305)
T PRK14264 212 ARCLAVDPEVILMDE---PASALDPIATSKIEDLIEELAE-EYTVVVVTHNMQQAARISDQTAVFLT-GGEL 278 (305)
T ss_pred HHHHhcCCCEEEEeC---CcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHHHHHHhcCEEEEEec-CCEE
Confidence 999999999999999 999999887 778888887655 4789999999999999999974 566 5653
No 298
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=1.5e-28 Score=216.63 Aligned_cols=168 Identities=15% Similarity=0.157 Sum_probs=123.8
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhccc-----ccCCCEEEeecCchhh-----hHHHHHHHhhh---hhc
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYS-----KSVGAKAVACTQPRRV-----AAMSVAQRVSE---EMD 132 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~-----~~~G~~~i~~~~~~~~-----~~~~~~~~~~~---~~~ 132 (302)
+++++++.|++|++++|+|+||||||||+++|+|+.. |++|++.++|...... .......++.+ .+.
T Consensus 18 ~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~ 97 (250)
T PRK14266 18 ILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVELRKKVGMVFQKPNPFP 97 (250)
T ss_pred EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHHHhhheEEEecCCccCc
Confidence 5788999999999999999999999999999999864 3889999988654210 00000111111 111
Q ss_pred cccccceeeeeeec-------------------CC-----CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCC
Q psy2071 133 CQLGQEVGYSIRFE-------------------DC-----SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERT 188 (302)
Q Consensus 133 ~~~~~~v~~~~~~~-------------------~~-----~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~ 188 (302)
.++.+++.+..... .. ...++....||+||+||++||+||+.+|++||||| |+
T Consensus 98 ~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDE---P~ 174 (250)
T PRK14266 98 KSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTIAVSPEVILMDE---PC 174 (250)
T ss_pred chHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcC---CC
Confidence 23334433221100 00 01134567799999999999999999999999999 99
Q ss_pred cchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 189 LATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 189 ~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
+++|+.. ..+.+++.+..+ +.||+++||+.+++..+||++.+|+ .|+.
T Consensus 175 ~gLD~~~~~~l~~~l~~~~~-~~tiii~sh~~~~~~~~~~~i~~l~-~G~i 223 (250)
T PRK14266 175 SALDPISTTKIEDLIHKLKE-DYTIVIVTHNMQQATRVSKYTSFFL-NGEI 223 (250)
T ss_pred ccCCHHHHHHHHHHHHHHhc-CCeEEEEECCHHHHHhhcCEEEEEE-CCeE
Confidence 9999877 778888887654 6899999999999999999999997 5653
No 299
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.94 E-value=4.1e-26 Score=233.89 Aligned_cols=192 Identities=47% Similarity=0.804 Sum_probs=176.0
Q ss_pred HhhcCCChhHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhhcccc
Q psy2071 56 RKRITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQL 135 (302)
Q Consensus 56 ~~r~~lp~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (302)
+.+..||++..+++|...|..+++++|.|++||||||++++++...... ....|.+++|+++++.+++.+++.+++..+
T Consensus 61 ~~~~~LPi~~~~~~Il~~l~~~~vvii~g~TGSGKTTqlPq~lle~~~~-~~~~I~~tQPRRlAA~svA~RvA~elg~~l 139 (1283)
T TIGR01967 61 RYPDNLPVSAKREDIAEAIAENQVVIIAGETGSGKTTQLPKICLELGRG-SHGLIGHTQPRRLAARTVAQRIAEELGTPL 139 (1283)
T ss_pred cCCCCCCHHHHHHHHHHHHHhCceEEEeCCCCCCcHHHHHHHHHHcCCC-CCceEecCCccHHHHHHHHHHHHHHhCCCc
Confidence 4556799999999999999999999999999999999999998654321 134678999999999999999999999999
Q ss_pred ccceeeeeeecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEEE
Q psy2071 136 GQEVGYSIRFEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILMGVLKEVIKQRADLKLVIMSA 215 (302)
Q Consensus 136 ~~~v~~~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~~~l~~ll~~~~~~~~~ii~~ 215 (302)
++.|||.++++...+.++.+.+++.|...+....+.++.++++||+||+||++..+|.++..+++++..+.+.+++++++
T Consensus 140 G~~VGY~vR~~~~~s~~T~I~~~TdGiLLr~l~~d~~L~~~~~IIIDEaHERsL~~D~LL~lLk~il~~rpdLKlIlmSA 219 (1283)
T TIGR01967 140 GEKVGYKVRFHDQVSSNTLVKLMTDGILLAETQQDRFLSRYDTIIIDEAHERSLNIDFLLGYLKQLLPRRPDLKIIITSA 219 (1283)
T ss_pred ceEEeeEEcCCcccCCCceeeeccccHHHHHhhhCcccccCcEEEEcCcchhhccchhHHHHHHHHHhhCCCCeEEEEeC
Confidence 99999999999988889999999999999999999999999999999999999999999988899988778889999999
Q ss_pred ecCHHHHHhhccCCCeeeecCcCCccceeecCC
Q psy2071 216 TLDAGKFQQYFDNAPLMNVPGRTHPVEIFYTPE 248 (302)
Q Consensus 216 thd~~~~~~~~d~~~~l~i~g~~~~~~~~~~~~ 248 (302)
|-|.+.+.+++...+++.++|+.+|++++|.+.
T Consensus 220 Tld~~~fa~~F~~apvI~V~Gr~~PVev~Y~~~ 252 (1283)
T TIGR01967 220 TIDPERFSRHFNNAPIIEVSGRTYPVEVRYRPL 252 (1283)
T ss_pred CcCHHHHHHHhcCCCEEEECCCcccceeEEecc
Confidence 999999999999999999999999999999764
No 300
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.94 E-value=2.2e-28 Score=238.47 Aligned_cols=166 Identities=17% Similarity=0.172 Sum_probs=119.4
Q ss_pred HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeec--------CchhhhHHHHHHHhhhh------
Q psy2071 65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACT--------QPRRVAAMSVAQRVSEE------ 130 (302)
Q Consensus 65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~--------~~~~~~~~~~~~~~~~~------ 130 (302)
.+++++++.|++|++++|+||||||||||+++|+|+++|++|.+.+.+. ++......++...+...
T Consensus 21 ~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~~~~tv~e~l~~~~~~~~~ 100 (556)
T PRK11819 21 QILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPGIKVGYLPQEPQLDPEKTVRENVEEGVAEVKA 100 (556)
T ss_pred eeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCCCCCcHHHHHHHhhHHHHH
Confidence 3678999999999999999999999999999999999999999877531 11000000111111000
Q ss_pred -----------hccc-------------------------cccceeeeeeecCCCCccccccccCHHHHHHHhccccCCC
Q psy2071 131 -----------MDCQ-------------------------LGQEVGYSIRFEDCSSPKTVLKYMTDGMLLREGMSDPMLE 174 (302)
Q Consensus 131 -----------~~~~-------------------------~~~~v~~~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~ 174 (302)
.... ....+...+........++.+..|||||+||++||++|+.
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~la~al~~ 180 (556)
T PRK11819 101 ALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPPWDAKVTKLSGGERRRVALCRLLLE 180 (556)
T ss_pred HHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCCcccCchhhcCHHHHHHHHHHHHHhC
Confidence 0000 0000000000001112356778899999999999999999
Q ss_pred CCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCc
Q psy2071 175 NYQVILLDEAHERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGR 237 (302)
Q Consensus 175 ~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~ 237 (302)
+|++||||| ||+++|+.. ..+.++++... .|||++|||.+++..+||++++|+ .|+
T Consensus 181 ~p~vlLLDE---Pt~~LD~~~~~~l~~~L~~~~---~tviiisHd~~~~~~~~d~i~~l~-~g~ 237 (556)
T PRK11819 181 KPDMLLLDE---PTNHLDAESVAWLEQFLHDYP---GTVVAVTHDRYFLDNVAGWILELD-RGR 237 (556)
T ss_pred CCCEEEEcC---CCCcCChHHHHHHHHHHHhCC---CeEEEEeCCHHHHHhhcCeEEEEe-CCE
Confidence 999999999 999999887 77888887653 489999999999999999999998 665
No 301
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.94 E-value=2.8e-28 Score=243.45 Aligned_cols=166 Identities=15% Similarity=0.179 Sum_probs=128.0
Q ss_pred HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHh---hh---hhccccccc
Q psy2071 65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRV---SE---EMDCQLGQE 138 (302)
Q Consensus 65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~---~~---~~~~~~~~~ 138 (302)
.+++++++.|++|+.++|+|+||||||||+++|+|++.|++|++.++|.+.+........+.+ .+ .+..++.+|
T Consensus 467 ~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eN 546 (686)
T TIGR03797 467 LILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFEN 546 (686)
T ss_pred cceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccEEEccCCccCcccHHHH
Confidence 368999999999999999999999999999999999999999999999876554433333222 12 234566666
Q ss_pred eeeeeeecC-------------------CCCccccc----cccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH
Q psy2071 139 VGYSIRFED-------------------CSSPKTVL----KYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM 195 (302)
Q Consensus 139 v~~~~~~~~-------------------~~~~~~~~----~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~ 195 (302)
+.+.-.... ....++.+ ..||||||||++|||||+.+|++||||| ||+++|+..
T Consensus 547 i~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p~iLiLDE---pTS~LD~~t 623 (686)
T TIGR03797 547 IAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDE---ATSALDNRT 623 (686)
T ss_pred HhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC---CccCCCHHH
Confidence 655321000 00112322 4599999999999999999999999999 999999888
Q ss_pred -HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 196 -GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 196 -~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
..+.+.+... +.|+|++||+++.+. .||++++|+ .|+.
T Consensus 624 e~~i~~~L~~~---~~T~IiItHr~~~i~-~~D~Iivl~-~G~i 662 (686)
T TIGR03797 624 QAIVSESLERL---KVTRIVIAHRLSTIR-NADRIYVLD-AGRV 662 (686)
T ss_pred HHHHHHHHHHh---CCeEEEEecChHHHH-cCCEEEEEE-CCEE
Confidence 6677776654 469999999998876 599999998 6653
No 302
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=1.4e-28 Score=238.83 Aligned_cols=167 Identities=16% Similarity=0.159 Sum_probs=119.3
Q ss_pred HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecC--------chhhhHHHHHHHhh--------
Q psy2071 65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQ--------PRRVAAMSVAQRVS-------- 128 (302)
Q Consensus 65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~--------~~~~~~~~~~~~~~-------- 128 (302)
.+.+++++.|++|++++|+||||||||||+++|+|+++|++|.+.+.+.. +......++...+.
T Consensus 15 ~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~ 94 (530)
T PRK15064 15 PLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPNERLGKLRQDQFAFEEFTVLDTVIMGHTELWE 94 (530)
T ss_pred EeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCcCCCCcHHHHHHHhhHHHHH
Confidence 35789999999999999999999999999999999999999999886521 00000000000000
Q ss_pred ---------hhhcc---------------------ccccceeeeeeecCCC--CccccccccCHHHHHHHhccccCCCCC
Q psy2071 129 ---------EEMDC---------------------QLGQEVGYSIRFEDCS--SPKTVLKYMTDGMLLREGMSDPMLENY 176 (302)
Q Consensus 129 ---------~~~~~---------------------~~~~~v~~~~~~~~~~--~~~~~~~~lS~G~~qr~~la~al~~~p 176 (302)
..... .....+...+...... ..+..+..|||||+||++||++|+.+|
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGq~qrv~lA~aL~~~p 174 (530)
T PRK15064 95 VKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLMSEVAPGWKLRVLLAQALFSNP 174 (530)
T ss_pred HHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCchhhcCHHHHHHHHHHHHHhcCC
Confidence 00000 0000000000001111 113457889999999999999999999
Q ss_pred cEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 177 QVILLDEAHERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 177 ~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
++||||| ||+++|+.. ..+.+++.. .+.|||++|||.+.+.++||++++|+ .|+.
T Consensus 175 ~lLlLDE---Pt~~LD~~~~~~l~~~l~~---~~~tiiivsHd~~~~~~~~d~i~~l~-~g~i 230 (530)
T PRK15064 175 DILLLDE---PTNNLDINTIRWLEDVLNE---RNSTMIIISHDRHFLNSVCTHMADLD-YGEL 230 (530)
T ss_pred CEEEEcC---CCcccCHHHHHHHHHHHHh---CCCeEEEEeCCHHHHHhhcceEEEEe-CCEE
Confidence 9999999 999999887 777787754 37899999999999999999999998 6653
No 303
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.94 E-value=3.8e-28 Score=243.40 Aligned_cols=166 Identities=16% Similarity=0.192 Sum_probs=127.7
Q ss_pred HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHh---h---hhhccccccc
Q psy2071 65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRV---S---EEMDCQLGQE 138 (302)
Q Consensus 65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~---~---~~~~~~~~~~ 138 (302)
.+++++++.|++|+.++|+|+||||||||+++|+|++.|++|.+.++|.+.+..........+ . ..+..++.+|
T Consensus 493 ~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eN 572 (710)
T TIGR03796 493 PLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDN 572 (710)
T ss_pred CcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhheeEEecCChhhhccHHHH
Confidence 368999999999999999999999999999999999999999999999876654433333222 1 1234566666
Q ss_pred eeeeee-ec------------------CC-CCccccc----cccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHH
Q psy2071 139 VGYSIR-FE------------------DC-SSPKTVL----KYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDIL 194 (302)
Q Consensus 139 v~~~~~-~~------------------~~-~~~~~~~----~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~ 194 (302)
+.+.-. .. .. ...++.+ ..|||||+||++|||||+.+|++||||| ||+++|..
T Consensus 573 i~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p~iliLDE---ptS~LD~~ 649 (710)
T TIGR03796 573 LTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDE---ATSALDPE 649 (710)
T ss_pred hhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCCCEEEEEC---ccccCCHH
Confidence 654311 00 00 0112322 4599999999999999999999999999 99999988
Q ss_pred H-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 195 M-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 195 ~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
. ..+.+.+.. .+.|+|++||+++.+.. ||++++|+ .|+.
T Consensus 650 te~~i~~~l~~---~~~T~IiitHrl~~i~~-~D~Iivl~-~G~i 689 (710)
T TIGR03796 650 TEKIIDDNLRR---RGCTCIIVAHRLSTIRD-CDEIIVLE-RGKV 689 (710)
T ss_pred HHHHHHHHHHh---cCCEEEEEecCHHHHHh-CCEEEEEe-CCEE
Confidence 7 666666654 37899999999988764 99999998 6653
No 304
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=2.6e-28 Score=236.82 Aligned_cols=164 Identities=17% Similarity=0.159 Sum_probs=120.9
Q ss_pred HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhhcccccccee----
Q psy2071 65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVG---- 140 (302)
Q Consensus 65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~---- 140 (302)
.+++++++.|++|++++|+||||||||||+++|+|+++|++|.+.+.+.. +++...+..........++.+++.
T Consensus 333 ~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~--~i~~~~q~~~~~~~~~~t~~~~~~~~~~ 410 (530)
T PRK15064 333 PLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENA--NIGYYAQDHAYDFENDLTLFDWMSQWRQ 410 (530)
T ss_pred eeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCce--EEEEEcccccccCCCCCcHHHHHHHhcc
Confidence 46789999999999999999999999999999999999999999876531 111111000000000011111111
Q ss_pred ---------eee-eecC-CCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCC
Q psy2071 141 ---------YSI-RFED-CSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVIKQRADL 208 (302)
Q Consensus 141 ---------~~~-~~~~-~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~ 208 (302)
..+ .+.. ....++.+..|||||+||++||++++.+|++||||| ||+++|+.. ..+.+++...
T Consensus 411 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDE---Pt~~LD~~~~~~l~~~l~~~--- 484 (530)
T PRK15064 411 EGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDE---PTNHMDMESIESLNMALEKY--- 484 (530)
T ss_pred CCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcC---CCCCCCHHHHHHHHHHHHHC---
Confidence 001 1111 012356778899999999999999999999999999 999999887 7788888765
Q ss_pred cEEEEEEecCHHHHHhhccCCCeeeecCc
Q psy2071 209 KLVIMSATLDAGKFQQYFDNAPLMNVPGR 237 (302)
Q Consensus 209 ~~~ii~~thd~~~~~~~~d~~~~l~i~g~ 237 (302)
+.|||++|||.+++..+||++++|+ .|+
T Consensus 485 ~~tvi~vsHd~~~~~~~~d~i~~l~-~g~ 512 (530)
T PRK15064 485 EGTLIFVSHDREFVSSLATRIIEIT-PDG 512 (530)
T ss_pred CCEEEEEeCCHHHHHHhCCEEEEEE-CCe
Confidence 3489999999999999999999998 554
No 305
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.94 E-value=3e-28 Score=237.39 Aligned_cols=166 Identities=17% Similarity=0.142 Sum_probs=118.9
Q ss_pred HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecC--------chhhhHHHHHHHhhhh------
Q psy2071 65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQ--------PRRVAAMSVAQRVSEE------ 130 (302)
Q Consensus 65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~--------~~~~~~~~~~~~~~~~------ 130 (302)
.+++++++.|++|++++|+|+||||||||+++|+|+++|++|.+.+.+.. +.-....++...+...
T Consensus 19 ~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~~~~tv~e~i~~~~~~~~~ 98 (552)
T TIGR03719 19 EILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGIKVGYLPQEPQLDPTKTVRENVEEGVAEIKD 98 (552)
T ss_pred eeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCCCCCCcHHHHHHHhhHHHHH
Confidence 36789999999999999999999999999999999999999998775321 1000000111111000
Q ss_pred -----------hccccc----------------ccee---------eeeeecCCCCccccccccCHHHHHHHhccccCCC
Q psy2071 131 -----------MDCQLG----------------QEVG---------YSIRFEDCSSPKTVLKYMTDGMLLREGMSDPMLE 174 (302)
Q Consensus 131 -----------~~~~~~----------------~~v~---------~~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~ 174 (302)
+..... +.++ ..+........++.+..|||||+||++||++|+.
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkqrv~la~al~~ 178 (552)
T TIGR03719 99 ALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPPWDADVTKLSGGERRRVALCRLLLS 178 (552)
T ss_pred HHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCCcccCchhhcCHHHHHHHHHHHHHhc
Confidence 000000 0000 0000001111356678899999999999999999
Q ss_pred CCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCc
Q psy2071 175 NYQVILLDEAHERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGR 237 (302)
Q Consensus 175 ~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~ 237 (302)
+|++||||| ||+++|+.. ..+.+++... +.+||++|||.+.+..+||++++|+ .|+
T Consensus 179 ~p~lLLLDE---Pt~~LD~~~~~~l~~~L~~~---~~tvIiisHd~~~~~~~~d~v~~l~-~g~ 235 (552)
T TIGR03719 179 KPDMLLLDE---PTNHLDAESVAWLEQHLQEY---PGTVVAVTHDRYFLDNVAGWILELD-RGR 235 (552)
T ss_pred CCCEEEEcC---CCCCCChHHHHHHHHHHHhC---CCeEEEEeCCHHHHHhhcCeEEEEE-CCE
Confidence 999999999 999999888 7788888765 2489999999999999999999998 665
No 306
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=7e-28 Score=237.81 Aligned_cols=168 Identities=14% Similarity=0.129 Sum_probs=121.6
Q ss_pred hHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecC--------c-----hhhhHHHHHHHhhhh
Q psy2071 64 FEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQ--------P-----RRVAAMSVAQRVSEE 130 (302)
Q Consensus 64 ~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~--------~-----~~~~~~~~~~~~~~~ 130 (302)
..+++++++.|++|++++|+||||||||||+++|+|+++|++|.|.+.+.. . ..+..+.........
T Consensus 14 ~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~~i~~~~q~~~~~~~~~~~~v~~~~~~~~~ 93 (638)
T PRK10636 14 RVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQLAWVNQETPALPQPALEYVIDGDREYRQ 93 (638)
T ss_pred ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCCCCCHHHHHHHhhHHHHH
Confidence 346789999999999999999999999999999999999999999876531 1 011111110000000
Q ss_pred hc---------------------------cccccceeeeeeecCC--CCccccccccCHHHHHHHhccccCCCCCcEEEE
Q psy2071 131 MD---------------------------CQLGQEVGYSIRFEDC--SSPKTVLKYMTDGMLLREGMSDPMLENYQVILL 181 (302)
Q Consensus 131 ~~---------------------------~~~~~~v~~~~~~~~~--~~~~~~~~~lS~G~~qr~~la~al~~~p~lliL 181 (302)
.. ......+...+..... ...++.+..|||||+||++||++|+.+|++|||
T Consensus 94 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSgGerqRv~LA~aL~~~P~lLLL 173 (638)
T PRK10636 94 LEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMRLNLAQALICRSDLLLL 173 (638)
T ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhhcCHHHHHHHHHHHHHccCCCEEEE
Confidence 00 0000000000111111 123567788999999999999999999999999
Q ss_pred cCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 182 DEAHERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 182 DE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
|| ||+++|+.. ..+.+++... +.+||++|||.+++..+||++++|+ .|+.
T Consensus 174 DE---Ptn~LD~~~~~~L~~~L~~~---~~tviivsHd~~~l~~~~d~i~~L~-~G~i 224 (638)
T PRK10636 174 DE---PTNHLDLDAVIWLEKWLKSY---QGTLILISHDRDFLDPIVDKIIHIE-QQSL 224 (638)
T ss_pred cC---CCCcCCHHHHHHHHHHHHhC---CCeEEEEeCCHHHHHHhcCEEEEEe-CCEE
Confidence 99 999999877 7788887765 4589999999999999999999998 6654
No 307
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.94 E-value=3.4e-28 Score=234.00 Aligned_cols=175 Identities=9% Similarity=0.063 Sum_probs=124.1
Q ss_pred CCChhHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccc-cCCCEEEeecCch----------hhhHHHHHHHhh
Q psy2071 60 TLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSK-SVGAKAVACTQPR----------RVAAMSVAQRVS 128 (302)
Q Consensus 60 ~lp~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~-~~G~~~i~~~~~~----------~~~~~~~~~~~~ 128 (302)
.++...+++++++.|++|++++|+||||||||||+++|+|+.++ ++|++.+.|.... .++...+.....
T Consensus 269 ~~~~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~ 348 (490)
T PRK10938 269 SYNDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKHIGYVSSSLHLD 348 (490)
T ss_pred EECCeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHhhceEECHHHHhh
Confidence 33333467999999999999999999999999999999998765 6899999885321 011111110000
Q ss_pred hhhccccccceee----------------------ee-eecCCC-CccccccccCHHHHHHHhccccCCCCCcEEEEcCC
Q psy2071 129 EEMDCQLGQEVGY----------------------SI-RFEDCS-SPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEA 184 (302)
Q Consensus 129 ~~~~~~~~~~v~~----------------------~~-~~~~~~-~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~ 184 (302)
.....++.+.+.+ .+ .+.... ..++.+..||+||+||++||+||+.+|++|||||
T Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDE- 427 (490)
T PRK10938 349 YRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRALVKHPTLLILDE- 427 (490)
T ss_pred cccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHHHHHHHHhcCCCEEEEcC-
Confidence 0000111111100 00 011111 2345678899999999999999999999999999
Q ss_pred CCCCcchHHHH-HHHHHHHHHcCCC-cEEEEEEecCHHHHHh-hccCCCeeeecCcC
Q psy2071 185 HERTLATDILM-GVLKEVIKQRADL-KLVIMSATLDAGKFQQ-YFDNAPLMNVPGRT 238 (302)
Q Consensus 185 ~~p~~~lD~~~-~~l~~ll~~~~~~-~~~ii~~thd~~~~~~-~~d~~~~l~i~g~~ 238 (302)
||+++|+.. ..+.+++....+. +.|||++|||++++.. +||++.+|+ .|+.
T Consensus 428 --Pt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l~-~G~i 481 (490)
T PRK10938 428 --PLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRLEFVP-DGDI 481 (490)
T ss_pred --ccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhheeEEEec-CCce
Confidence 999999887 7788888876544 4579999999999987 589999998 6753
No 308
>PRK13409 putative ATPase RIL; Provisional
Probab=99.94 E-value=3.9e-28 Score=236.84 Aligned_cols=163 Identities=16% Similarity=0.149 Sum_probs=122.8
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEE-----------EeecCchhhhH---------HHHHH
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKA-----------VACTQPRRVAA---------MSVAQ 125 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~-----------i~~~~~~~~~~---------~~~~~ 125 (302)
.+.+++ .+++|++++|+||||||||||+++|+|+++|+.|++. +.|.+...... ....+
T Consensus 89 ~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~q 167 (590)
T PRK13409 89 KLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKLYNGEIKVVHKPQ 167 (590)
T ss_pred eEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHHHhccCcceeeccc
Confidence 467887 7999999999999999999999999999999999987 66655322100 00011
Q ss_pred Hhhhhh---ccccccceeee---------e-eecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchH
Q psy2071 126 RVSEEM---DCQLGQEVGYS---------I-RFEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATD 192 (302)
Q Consensus 126 ~~~~~~---~~~~~~~v~~~---------~-~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD 192 (302)
++.+.+ ..++.+++.+. + .+......++.+..|||||+||++||++|+.+|++||||| ||+++|
T Consensus 168 ~~~~~p~~~~~tv~e~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia~al~~~p~lllLDE---Pts~LD 244 (590)
T PRK13409 168 YVDLIPKVFKGKVRELLKKVDERGKLDEVVERLGLENILDRDISELSGGELQRVAIAAALLRDADFYFFDE---PTSYLD 244 (590)
T ss_pred chhhhhhhhcchHHHHHHhhhHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEEC---CCCCCC
Confidence 111111 11232222110 0 0111112456778899999999999999999999999999 999999
Q ss_pred HHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeee
Q psy2071 193 ILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMN 233 (302)
Q Consensus 193 ~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~ 233 (302)
+.. ..+.++++.+.+ +.++|++|||++.+..+||++.+|+
T Consensus 245 ~~~~~~l~~~i~~l~~-g~tvIivsHd~~~l~~~~D~v~vl~ 285 (590)
T PRK13409 245 IRQRLNVARLIRELAE-GKYVLVVEHDLAVLDYLADNVHIAY 285 (590)
T ss_pred HHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEEe
Confidence 887 778888887777 8999999999999999999999886
No 309
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.94 E-value=9.4e-28 Score=235.62 Aligned_cols=167 Identities=17% Similarity=0.247 Sum_probs=127.4
Q ss_pred HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHh---hh---hhccccccc
Q psy2071 65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRV---SE---EMDCQLGQE 138 (302)
Q Consensus 65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~---~~---~~~~~~~~~ 138 (302)
.+++++++.|++|+.++|+|+||||||||+++|+|+++|++|++.++|.+..........+.+ .+ .+..++.+|
T Consensus 357 ~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~N 436 (582)
T PRK11176 357 PALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANN 436 (582)
T ss_pred ccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhceEEccCceeecchHHHH
Confidence 368999999999999999999999999999999999999999999999875543322222222 22 234566677
Q ss_pred eeeeee--ecC------------------C-CCccccc----cccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHH
Q psy2071 139 VGYSIR--FED------------------C-SSPKTVL----KYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDI 193 (302)
Q Consensus 139 v~~~~~--~~~------------------~-~~~~~~~----~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~ 193 (302)
+.+... ... . ...++.+ ..|||||+||++|||||+.+|++||||| ||+++|+
T Consensus 437 i~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~ililDE---ptsaLD~ 513 (582)
T PRK11176 437 IAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDE---ATSALDT 513 (582)
T ss_pred HhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCCCEEEEEC---ccccCCH
Confidence 665321 000 0 0112322 4499999999999999999999999999 9999998
Q ss_pred HH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCc
Q psy2071 194 LM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGR 237 (302)
Q Consensus 194 ~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~ 237 (302)
.. ..+.+.+....+ +.|+|++||+.+.+ +.||+|++|+ .|+
T Consensus 514 ~t~~~i~~~l~~~~~-~~tvI~VtHr~~~~-~~~D~Ii~l~-~g~ 555 (582)
T PRK11176 514 ESERAIQAALDELQK-NRTSLVIAHRLSTI-EKADEILVVE-DGE 555 (582)
T ss_pred HHHHHHHHHHHHHhC-CCEEEEEecchHHH-HhCCEEEEEE-CCE
Confidence 88 667777766533 58999999999776 4699999998 665
No 310
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.94 E-value=2.5e-28 Score=259.72 Aligned_cols=168 Identities=14% Similarity=0.162 Sum_probs=130.3
Q ss_pred HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhh-h-HHH----HHHHhhhhhccccccc
Q psy2071 65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRV-A-AMS----VAQRVSEEMDCQLGQE 138 (302)
Q Consensus 65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~-~-~~~----~~~~~~~~~~~~~~~~ 138 (302)
.+++++++.+++||+++|+|+||||||||+++|+|+++|++|++.+.|.+.... . ... ..+........++.++
T Consensus 944 ~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~~~~~r~~IG~~pQ~~~L~~~LTV~E~ 1023 (2272)
T TIGR01257 944 PAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSLGMCPQHNILFHHLTVAEH 1023 (2272)
T ss_pred eEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcchHHHHhhcEEEEecCCcCCCCCCHHHH
Confidence 367999999999999999999999999999999999999999999998764321 0 000 0111111123455555
Q ss_pred eeeeeeecC-------------------CCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHH
Q psy2071 139 VGYSIRFED-------------------CSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVL 198 (302)
Q Consensus 139 v~~~~~~~~-------------------~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l 198 (302)
+.+..+... ....++.+..||||||||++||+||+.+|++||||| ||+++|+.. ..+
T Consensus 1024 L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~PkVLLLDE---PTSGLDp~sr~~l 1100 (2272)
T TIGR01257 1024 ILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDE---PTSGVDPYSRRSI 1100 (2272)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEEC---CCcCCCHHHHHHH
Confidence 543221111 112345667899999999999999999999999999 999999888 788
Q ss_pred HHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCc
Q psy2071 199 KEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGR 237 (302)
Q Consensus 199 ~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~ 237 (302)
.+++++.++ |.|||++||+++++..+||++++|+ .|+
T Consensus 1101 ~~lL~~l~~-g~TIIltTHdmdea~~laDrI~iL~-~Gk 1137 (2272)
T TIGR01257 1101 WDLLLKYRS-GRTIIMSTHHMDEADLLGDRIAIIS-QGR 1137 (2272)
T ss_pred HHHHHHHhC-CCEEEEEECCHHHHHHhCCEEEEEE-CCE
Confidence 899887754 8899999999999999999999998 554
No 311
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.94 E-value=6.5e-28 Score=241.22 Aligned_cols=166 Identities=16% Similarity=0.211 Sum_probs=126.8
Q ss_pred HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHh---hh---hhccccccc
Q psy2071 65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRV---SE---EMDCQLGQE 138 (302)
Q Consensus 65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~---~~---~~~~~~~~~ 138 (302)
.+++++++.|++|+.++|+||||||||||+++|+|+++|++|+|.++|.+..........+.+ .+ .+..++.+|
T Consensus 495 ~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreN 574 (711)
T TIGR00958 495 PVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVREN 574 (711)
T ss_pred ccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhhceEEecCccccccCHHHH
Confidence 368999999999999999999999999999999999999999999999876554433333222 22 235567777
Q ss_pred eeeeeeecC-------------------C-CCccccc----cccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHH
Q psy2071 139 VGYSIRFED-------------------C-SSPKTVL----KYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDIL 194 (302)
Q Consensus 139 v~~~~~~~~-------------------~-~~~~~~~----~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~ 194 (302)
+.|...... . ...++.+ ..||||||||++||||++.+|+++|||| ||+++|..
T Consensus 575 I~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~~p~ILILDE---pTSaLD~~ 651 (711)
T TIGR00958 575 IAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDE---ATSALDAE 651 (711)
T ss_pred HhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEEc---cccccCHH
Confidence 766532100 0 0112322 3599999999999999999999999999 99999987
Q ss_pred H-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 195 M-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 195 ~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
. ..+.+ ... ..+.|+|++||+.+.+. .||+|++|+ .|+.
T Consensus 652 te~~i~~-~~~--~~~~TvIiItHrl~~i~-~aD~IivL~-~G~i 691 (711)
T TIGR00958 652 CEQLLQE-SRS--RASRTVLLIAHRLSTVE-RADQILVLK-KGSV 691 (711)
T ss_pred HHHHHHH-hhc--cCCCeEEEEeccHHHHH-hCCEEEEEE-CCEE
Confidence 7 55665 222 24679999999998775 599999998 6653
No 312
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=8.4e-28 Score=222.72 Aligned_cols=179 Identities=17% Similarity=0.226 Sum_probs=132.5
Q ss_pred HHHHhhcCCChhH--HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHH------H
Q psy2071 53 ELHRKRITLPVFE--YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSV------A 124 (302)
Q Consensus 53 ~l~~~r~~lp~~~--~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~------~ 124 (302)
++.+..+++|.-+ ++++|++.+++||.++|+|++||||||++.+++|.+.|++|++.++|.+......... .
T Consensus 338 ~~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl 417 (573)
T COG4987 338 ELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVL 417 (573)
T ss_pred eeccceeecCCCccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhh
Confidence 3455666677655 7999999999999999999999999999999999999999999999987654433211 1
Q ss_pred HHhhhhhccccccceeeeeee-------------------cCC-CCcccc----ccccCHHHHHHHhccccCCCCCcEEE
Q psy2071 125 QRVSEEMDCQLGQEVGYSIRF-------------------EDC-SSPKTV----LKYMTDGMLLREGMSDPMLENYQVIL 180 (302)
Q Consensus 125 ~~~~~~~~~~~~~~v~~~~~~-------------------~~~-~~~~~~----~~~lS~G~~qr~~la~al~~~p~lli 180 (302)
.+-...+..++.+|+...-.. ... ...++. -..|||||+||++|||+|+++.+++|
T Consensus 418 ~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~l 497 (573)
T COG4987 418 TQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWL 497 (573)
T ss_pred ccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCCeEE
Confidence 111222333444444322111 000 011222 23499999999999999999999999
Q ss_pred EcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCc
Q psy2071 181 LDEAHERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGR 237 (302)
Q Consensus 181 LDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~ 237 (302)
||| ||.++|+.. ..+.+++....+ ++|++++||++-.++ .||+|++|+ .|+
T Consensus 498 LDE---PTegLD~~TE~~vL~ll~~~~~-~kTll~vTHrL~~le-~~drIivl~-~Gk 549 (573)
T COG4987 498 LDE---PTEGLDPITERQVLALLFEHAE-GKTLLMVTHRLRGLE-RMDRIIVLD-NGK 549 (573)
T ss_pred ecC---CcccCChhhHHHHHHHHHHHhc-CCeEEEEecccccHh-hcCEEEEEE-CCe
Confidence 999 999999988 556666655433 789999999998875 789999999 664
No 313
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.94 E-value=6e-28 Score=215.70 Aligned_cols=160 Identities=14% Similarity=0.162 Sum_probs=114.4
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhhccccccceeeee--
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSI-- 143 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-- 143 (302)
+++++++.|++|++++|+|+||||||||+++|+|+++|++|++.+.|. ++.......+ ...++.+++.+..
T Consensus 52 vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g~----i~yv~q~~~l---~~~tv~enl~~~~~~ 124 (282)
T cd03291 52 VLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGR----ISFSSQFSWI---MPGTIKENIIFGVSY 124 (282)
T ss_pred ceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCE----EEEEeCcccc---cccCHHHHhhccccc
Confidence 678999999999999999999999999999999999999999887652 1100000000 0001111111100
Q ss_pred ------------eec----CC-----CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHH-
Q psy2071 144 ------------RFE----DC-----SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKE- 200 (302)
Q Consensus 144 ------------~~~----~~-----~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~- 200 (302)
... .. .........||+||+||++||++|+.+|+++|||| |++++|+.. ..+.+
T Consensus 125 ~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDE---Pt~gLD~~~~~~l~~~ 201 (282)
T cd03291 125 DEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDS---PFGYLDVFTEKEIFES 201 (282)
T ss_pred CHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEEC---CCccCCHHHHHHHHHH
Confidence 000 00 01112346899999999999999999999999999 999999887 55655
Q ss_pred HHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 201 VIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 201 ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
++..... +.+||++||+.+.+ ..||++++|+ .|+.
T Consensus 202 ll~~~~~-~~tIiiisH~~~~~-~~~d~i~~l~-~G~i 236 (282)
T cd03291 202 CVCKLMA-NKTRILVTSKMEHL-KKADKILILH-EGSS 236 (282)
T ss_pred HHHHhhC-CCEEEEEeCChHHH-HhCCEEEEEE-CCEE
Confidence 4444433 67999999999987 4799999998 6664
No 314
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=6.7e-28 Score=237.94 Aligned_cols=169 Identities=18% Similarity=0.153 Sum_probs=122.1
Q ss_pred CChhHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHH------------HHHhh
Q psy2071 61 LPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSV------------AQRVS 128 (302)
Q Consensus 61 lp~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~------------~~~~~ 128 (302)
++...+++++++.|.+|++++|+||||||||||+++|+|+++|++|.+.+.+.. ++++..+ ...+.
T Consensus 322 y~~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~--~igy~~Q~~~~~l~~~~~~~~~~~ 399 (638)
T PRK10636 322 YGDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGI--KLGYFAQHQLEFLRADESPLQHLA 399 (638)
T ss_pred eCCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCCE--EEEEecCcchhhCCccchHHHHHH
Confidence 333346899999999999999999999999999999999999999998875210 1111100 00000
Q ss_pred hhhccccccceeeee-eecCC-CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHc
Q psy2071 129 EEMDCQLGQEVGYSI-RFEDC-SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVIKQR 205 (302)
Q Consensus 129 ~~~~~~~~~~v~~~~-~~~~~-~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~ 205 (302)
..........+...+ .+... ...++.+..|||||+||++||++|+.+|++||||| ||+++|+.. ..+.+++...
T Consensus 400 ~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDE---Pt~~LD~~~~~~l~~~L~~~ 476 (638)
T PRK10636 400 RLAPQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDE---PTNHLDLDMRQALTEALIDF 476 (638)
T ss_pred HhCchhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcC---CCCCCCHHHHHHHHHHHHHc
Confidence 000000000011001 11111 12356788999999999999999999999999999 999999887 7888888876
Q ss_pred CCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 206 ADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 206 ~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
.+ |||++|||.+++..+||++++|+ .|..
T Consensus 477 --~g-tvi~vSHd~~~~~~~~d~i~~l~-~G~i 505 (638)
T PRK10636 477 --EG-ALVVVSHDRHLLRSTTDDLYLVH-DGKV 505 (638)
T ss_pred --CC-eEEEEeCCHHHHHHhCCEEEEEE-CCEE
Confidence 24 89999999999999999999998 5553
No 315
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.94 E-value=9.7e-28 Score=239.82 Aligned_cols=167 Identities=16% Similarity=0.238 Sum_probs=128.1
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhh------hhhccccccce
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVS------EEMDCQLGQEV 139 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~------~~~~~~~~~~v 139 (302)
+++++++.|++|+.++|+|+||||||||+++|+|++.|++|.+.++|.+..........+.++ ..+..++.+|+
T Consensus 480 vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi 559 (694)
T TIGR03375 480 ALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNI 559 (694)
T ss_pred ceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhccEEECCChhhhhhhHHHHH
Confidence 689999999999999999999999999999999999999999999998765544333332221 12334566666
Q ss_pred eeeeeec-------------------CC-CCccccc----cccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH
Q psy2071 140 GYSIRFE-------------------DC-SSPKTVL----KYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM 195 (302)
Q Consensus 140 ~~~~~~~-------------------~~-~~~~~~~----~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~ 195 (302)
.+.-... .. ...++.+ ..|||||+||++||||++.+|+++|||| ||+++|+..
T Consensus 560 ~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p~iliLDE---~Ts~LD~~t 636 (694)
T TIGR03375 560 ALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDE---PTSAMDNRS 636 (694)
T ss_pred hCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC---CCCCCCHHH
Confidence 5432100 00 0112222 4599999999999999999999999999 999999888
Q ss_pred -HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 196 -GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 196 -~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
..+.+.+....+ +.|++++||+++.+ ..||++++|+ .|+.
T Consensus 637 e~~i~~~l~~~~~-~~T~iiItHrl~~~-~~~D~iivl~-~G~i 677 (694)
T TIGR03375 637 EERFKDRLKRWLA-GKTLVLVTHRTSLL-DLVDRIIVMD-NGRI 677 (694)
T ss_pred HHHHHHHHHHHhC-CCEEEEEecCHHHH-HhCCEEEEEe-CCEE
Confidence 667777766543 67899999999876 5799999998 6653
No 316
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.94 E-value=8.2e-28 Score=237.60 Aligned_cols=170 Identities=19% Similarity=0.191 Sum_probs=122.1
Q ss_pred CChhHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecC--------chhhhHHHHHHHh-----
Q psy2071 61 LPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQ--------PRRVAAMSVAQRV----- 127 (302)
Q Consensus 61 lp~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~--------~~~~~~~~~~~~~----- 127 (302)
++...+++++++.|++|++++|+||||||||||+++|+|+++|++|.|.+.+.. +.......+.+.+
T Consensus 13 ~~~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~~~~~l~q~~~~~~~~~v~~~~~~~~~ 92 (635)
T PRK11147 13 FSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLIVARLQQDPPRNVEGTVYDFVAEGIE 92 (635)
T ss_pred eCCceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCCEEEEeccCCCCCCCCCHHHHHHHhhH
Confidence 333346789999999999999999999999999999999999999999876521 0000000000000
Q ss_pred ------------hhhhcc-ccc----------------------cceeeeeeecCCCCccccccccCHHHHHHHhccccC
Q psy2071 128 ------------SEEMDC-QLG----------------------QEVGYSIRFEDCSSPKTVLKYMTDGMLLREGMSDPM 172 (302)
Q Consensus 128 ------------~~~~~~-~~~----------------------~~v~~~~~~~~~~~~~~~~~~lS~G~~qr~~la~al 172 (302)
...+.. ... ..+...+...... .++.+..|||||+||++||++|
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~-~~~~~~~LSgGekqRv~LAraL 171 (635)
T PRK11147 93 EQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLD-PDAALSSLSGGWLRKAALGRAL 171 (635)
T ss_pred HHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCC-CCCchhhcCHHHHHHHHHHHHH
Confidence 000000 000 0000000001111 2567789999999999999999
Q ss_pred CCCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 173 LENYQVILLDEAHERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 173 ~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
+.+|++||||| ||+++|+.. ..+.+++.... .+||++|||.+++..+||++++|+ .|+.
T Consensus 172 ~~~P~lLLLDE---Pt~~LD~~~~~~L~~~L~~~~---~tvlivsHd~~~l~~~~d~i~~L~-~G~i 231 (635)
T PRK11147 172 VSNPDVLLLDE---PTNHLDIETIEWLEGFLKTFQ---GSIIFISHDRSFIRNMATRIVDLD-RGKL 231 (635)
T ss_pred hcCCCEEEEcC---CCCccCHHHHHHHHHHHHhCC---CEEEEEeCCHHHHHHhcCeEEEEE-CCEE
Confidence 99999999999 999999887 78888887763 489999999999999999999998 6654
No 317
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.94 E-value=1.7e-27 Score=234.18 Aligned_cols=167 Identities=14% Similarity=0.149 Sum_probs=127.1
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhh---h---hhccccccce
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVS---E---EMDCQLGQEV 139 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~---~---~~~~~~~~~v 139 (302)
+++++++.|++|+.++|+|+||||||||+++++|++.|++|.+.++|.+..........+.++ + .++.++.+|+
T Consensus 356 il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI 435 (592)
T PRK10790 356 VLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANV 435 (592)
T ss_pred eeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheEEEccCCccccchHHHHH
Confidence 689999999999999999999999999999999999999999999998755433332222221 1 2334555665
Q ss_pred eeeeeecC------------------C-CCcccc----ccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-
Q psy2071 140 GYSIRFED------------------C-SSPKTV----LKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM- 195 (302)
Q Consensus 140 ~~~~~~~~------------------~-~~~~~~----~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~- 195 (302)
.+.-.... . ...++. -..|||||+||++|||||+.+|++||||| ||+++|+..
T Consensus 436 ~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~illlDE---pts~LD~~t~ 512 (592)
T PRK10790 436 TLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDE---ATANIDSGTE 512 (592)
T ss_pred HhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEeC---CcccCCHHHH
Confidence 54321000 0 011222 24599999999999999999999999999 999999888
Q ss_pred HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 196 GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 196 ~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
..+.+.+..... +.|+|++||+.+.+. .||++++|+ .|+.
T Consensus 513 ~~i~~~l~~~~~-~~tvIivtHr~~~l~-~~D~ii~l~-~G~i 552 (592)
T PRK10790 513 QAIQQALAAVRE-HTTLVVIAHRLSTIV-EADTILVLH-RGQA 552 (592)
T ss_pred HHHHHHHHHHhC-CCEEEEEecchHHHH-hCCEEEEEE-CCEE
Confidence 677777776544 578889999998776 599999998 6654
No 318
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.94 E-value=2.4e-27 Score=232.00 Aligned_cols=168 Identities=18% Similarity=0.235 Sum_probs=128.6
Q ss_pred HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHH---hh---hhhccccccc
Q psy2071 65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQR---VS---EEMDCQLGQE 138 (302)
Q Consensus 65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~---~~---~~~~~~~~~~ 138 (302)
.+++++++.+++|++++|+||||||||||+++++|+++|++|++.++|.+.+.......... +. ..+..++.+|
T Consensus 354 ~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~N 433 (574)
T PRK11160 354 PVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDN 433 (574)
T ss_pred cceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhheeEEcccchhhcccHHHH
Confidence 36899999999999999999999999999999999999999999999987554332222221 11 2234466666
Q ss_pred eeeeeee---------------c----CCCCccc----cccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH
Q psy2071 139 VGYSIRF---------------E----DCSSPKT----VLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM 195 (302)
Q Consensus 139 v~~~~~~---------------~----~~~~~~~----~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~ 195 (302)
+.+.... + .....++ ....|||||+||++||||++.+|++||||| ||+++|...
T Consensus 434 i~~~~~~~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall~~~~ililDE---~ts~lD~~t 510 (574)
T PRK11160 434 LLLAAPNASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDE---PTEGLDAET 510 (574)
T ss_pred hhcCCCccCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC---CcccCCHHH
Confidence 6553210 0 0001122 234599999999999999999999999999 999999888
Q ss_pred -HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 196 -GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 196 -~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
..+.+.+....+ +.|++++||+.+.+. .||++++|+ .|+.
T Consensus 511 ~~~i~~~l~~~~~-~~tviiitHr~~~~~-~~d~i~~l~-~G~i 551 (574)
T PRK11160 511 ERQILELLAEHAQ-NKTVLMITHRLTGLE-QFDRICVMD-NGQI 551 (574)
T ss_pred HHHHHHHHHHHcC-CCEEEEEecChhHHH-hCCEEEEEe-CCeE
Confidence 777777776543 679999999999876 599999998 6653
No 319
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.94 E-value=1.1e-27 Score=235.41 Aligned_cols=168 Identities=17% Similarity=0.216 Sum_probs=128.2
Q ss_pred HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHh---hh---hhccccccc
Q psy2071 65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRV---SE---EMDCQLGQE 138 (302)
Q Consensus 65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~---~~---~~~~~~~~~ 138 (302)
.+++++++.+++|+.++|+|+||||||||+++++|+++|++|.+.++|.+..........+.+ .+ .+..++.+|
T Consensus 349 ~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~N 428 (588)
T PRK13657 349 QGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDN 428 (588)
T ss_pred ceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheEEEecCcccccccHHHH
Confidence 368999999999999999999999999999999999999999999999876554433333222 11 234466666
Q ss_pred eeeeeee-c------------------CC-CCccccc----cccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHH
Q psy2071 139 VGYSIRF-E------------------DC-SSPKTVL----KYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDIL 194 (302)
Q Consensus 139 v~~~~~~-~------------------~~-~~~~~~~----~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~ 194 (302)
+.+.-.. . .. ...++.+ ..|||||+||++|||||+.+|+++|||| ||+++|+.
T Consensus 429 i~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~~iliLDE---pts~LD~~ 505 (588)
T PRK13657 429 IRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDE---ATSALDVE 505 (588)
T ss_pred HhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC---CccCCCHH
Confidence 6553110 0 00 0112222 3599999999999999999999999999 99999988
Q ss_pred H-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 195 M-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 195 ~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
. ..+.+.+..... +.|++++||+.+.+ +.||++++|+ .|+.
T Consensus 506 t~~~i~~~l~~~~~-~~tvIiitHr~~~~-~~~D~ii~l~-~G~i 547 (588)
T PRK13657 506 TEAKVKAALDELMK-GRTTFIIAHRLSTV-RNADRILVFD-NGRV 547 (588)
T ss_pred HHHHHHHHHHHHhc-CCEEEEEEecHHHH-HhCCEEEEEE-CCEE
Confidence 8 667777765533 68999999999876 5799999998 6653
No 320
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.94 E-value=8.6e-27 Score=187.57 Aligned_cols=168 Identities=23% Similarity=0.322 Sum_probs=124.2
Q ss_pred HHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeec--CchhhhHHHHHHH----------hhh-----
Q psy2071 67 RTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACT--QPRRVAAMSVAQR----------VSE----- 129 (302)
Q Consensus 67 ~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~--~~~~~~~~~~~~~----------~~~----- 129 (302)
-++++|.+.+||+.+|+|++|||||||+++|++-+.|+.|.+.+... +++.+..+.-+.+ +-+
T Consensus 22 c~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEaeRR~L~RTeWG~VhQnP~DG 101 (258)
T COG4107 22 CRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAERRRLLRTEWGFVHQNPRDG 101 (258)
T ss_pred ccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHHHHHHhhhccceeecCcccc
Confidence 46889999999999999999999999999999999999999877542 2322222211111 111
Q ss_pred -hhccccccceeeee-----eecC----------------CCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCC
Q psy2071 130 -EMDCQLGQEVGYSI-----RFED----------------CSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHER 187 (302)
Q Consensus 130 -~~~~~~~~~v~~~~-----~~~~----------------~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p 187 (302)
-+..+.+.|+|.-+ +... ....+.....+||||+||+.|||.|+..|+++++|| |
T Consensus 102 LRm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~PrtFSGGMqQRLQiARnLVt~PrLvfMDE---P 178 (258)
T COG4107 102 LRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQIARNLVTRPRLVFMDE---P 178 (258)
T ss_pred ceeeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcccccchHHHHHHHHHHHhccCCceEEecC---C
Confidence 11233344444221 1000 001233456799999999999999999999999999 9
Q ss_pred CcchHHHH-HHHHHHHHH-cCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 188 TLATDILM-GVLKEVIKQ-RADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 188 ~~~lD~~~-~~l~~ll~~-~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
|.++|... ..+.++++. ..+.+..++++|||+..+.-++++..+|+ .|+.
T Consensus 179 TGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~VarLla~rlmvmk-~g~v 230 (258)
T COG4107 179 TGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMK-QGQV 230 (258)
T ss_pred CCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHHHHHhhhcceeec-CCCE
Confidence 99999776 667777764 35779999999999999999999999998 5554
No 321
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.93 E-value=2.9e-27 Score=231.83 Aligned_cols=167 Identities=19% Similarity=0.180 Sum_probs=125.9
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHH---hhh---hhccccccce
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQR---VSE---EMDCQLGQEV 139 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~---~~~---~~~~~~~~~v 139 (302)
+++++++.+++|+.++|+||||||||||+++|+|+++|++|++.++|.+..........+. +.+ .+..++.+|+
T Consensus 350 ~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni 429 (585)
T TIGR01192 350 GVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIRENI 429 (585)
T ss_pred cccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhheEEEccCCccCcccHHHHH
Confidence 5899999999999999999999999999999999999999999999876543322211111 111 2234555555
Q ss_pred eeeeee-------------------cCC-----CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH
Q psy2071 140 GYSIRF-------------------EDC-----SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM 195 (302)
Q Consensus 140 ~~~~~~-------------------~~~-----~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~ 195 (302)
.+.... ... .........|||||+||++|||||+.+|++||||| ||+++|...
T Consensus 430 ~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~p~ililDE---pts~LD~~~ 506 (585)
T TIGR01192 430 RLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILVLDE---ATSALDVET 506 (585)
T ss_pred hcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEEC---CccCCCHHH
Confidence 443110 000 00112234599999999999999999999999999 999999887
Q ss_pred -HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 196 -GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 196 -~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
..+.+.+....+ +.|+|++||+.+.+. .||++++|+ .|+.
T Consensus 507 ~~~i~~~l~~~~~-~~tvI~isH~~~~~~-~~d~i~~l~-~G~i 547 (585)
T TIGR01192 507 EARVKNAIDALRK-NRTTFIIAHRLSTVR-NADLVLFLD-QGRL 547 (585)
T ss_pred HHHHHHHHHHHhC-CCEEEEEEcChHHHH-cCCEEEEEE-CCEE
Confidence 777777776543 789999999999885 599999998 6653
No 322
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.93 E-value=3.9e-27 Score=229.41 Aligned_cols=169 Identities=14% Similarity=0.153 Sum_probs=126.0
Q ss_pred HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHH---hhh---hhccccccc
Q psy2071 65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQR---VSE---EMDCQLGQE 138 (302)
Q Consensus 65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~---~~~---~~~~~~~~~ 138 (302)
.+++++++.+++|+.++|+|+||||||||+++++|+++|++|.+.++|.+..........+. +.+ .+..++.+|
T Consensus 332 ~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~N 411 (544)
T TIGR01842 332 PTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPGTVAEN 411 (544)
T ss_pred cccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhheEEecCCcccccccHHHH
Confidence 36899999999999999999999999999999999999999999999876543322111111 111 123355555
Q ss_pred eeeeee-e--c----------------CCC-Cccc----cccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHH
Q psy2071 139 VGYSIR-F--E----------------DCS-SPKT----VLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDIL 194 (302)
Q Consensus 139 v~~~~~-~--~----------------~~~-~~~~----~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~ 194 (302)
+.+.-. . + ... ..++ ....|||||+||++||||++.+|++||||| ||+++|..
T Consensus 412 i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~~ililDE---pts~LD~~ 488 (544)
T TIGR01842 412 IARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDE---PNSNLDEE 488 (544)
T ss_pred HhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCCCEEEEeC---CccccCHH
Confidence 542211 0 0 000 0122 235699999999999999999999999999 99999988
Q ss_pred H-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 195 M-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 195 ~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
. ..+.+.+......+.|++++||+.+.+ ..||++++|+ .|+.
T Consensus 489 ~~~~i~~~l~~~~~~~~tvi~ith~~~~~-~~~d~i~~l~-~G~i 531 (544)
T TIGR01842 489 GEQALANAIKALKARGITVVVITHRPSLL-GCVDKILVLQ-DGRI 531 (544)
T ss_pred HHHHHHHHHHHHhhCCCEEEEEeCCHHHH-HhCCEEEEEE-CCEE
Confidence 7 677777776544578999999999865 5799999998 6653
No 323
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.93 E-value=2.3e-27 Score=237.62 Aligned_cols=167 Identities=14% Similarity=0.159 Sum_probs=128.0
Q ss_pred HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHh---hh---hhccccccc
Q psy2071 65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRV---SE---EMDCQLGQE 138 (302)
Q Consensus 65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~---~~---~~~~~~~~~ 138 (302)
.+++++++.|++|+.++|+|+||||||||+++|+|++.|++|++.++|.+..........+.+ .+ .+..++.+|
T Consensus 488 ~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eN 567 (708)
T TIGR01193 488 NILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILEN 567 (708)
T ss_pred cceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHheEEEecCceehhHHHHHH
Confidence 368999999999999999999999999999999999999999999999876554433333222 12 234456666
Q ss_pred eeeeeeecC--------------------C-CCccccc----cccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHH
Q psy2071 139 VGYSIRFED--------------------C-SSPKTVL----KYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDI 193 (302)
Q Consensus 139 v~~~~~~~~--------------------~-~~~~~~~----~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~ 193 (302)
+.+....+. . ...++.+ ..|||||+||++||||++.+|++||||| ||+++|.
T Consensus 568 i~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~p~iliLDE---~Ts~LD~ 644 (708)
T TIGR01193 568 LLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDE---STSNLDT 644 (708)
T ss_pred HhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeC---ccccCCH
Confidence 655411000 0 0112322 4599999999999999999999999999 9999998
Q ss_pred HH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 194 LM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 194 ~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
.. ..+.+.+... .+.|+|++||+.+.+ ..||++++|+ .|+.
T Consensus 645 ~te~~i~~~L~~~--~~~T~IiitHr~~~~-~~~D~i~~l~-~G~i 686 (708)
T TIGR01193 645 ITEKKIVNNLLNL--QDKTIIFVAHRLSVA-KQSDKIIVLD-HGKI 686 (708)
T ss_pred HHHHHHHHHHHHh--cCCEEEEEecchHHH-HcCCEEEEEE-CCEE
Confidence 87 6677777654 367999999999876 5799999998 6653
No 324
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.93 E-value=1.8e-27 Score=232.83 Aligned_cols=176 Identities=16% Similarity=0.246 Sum_probs=137.7
Q ss_pred HhhcCCC-hhHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhh------
Q psy2071 56 RKRITLP-VFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVS------ 128 (302)
Q Consensus 56 ~~r~~lp-~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~------ 128 (302)
+....+| ...+++++++.+++|+.++|+|||||||||+++.+.+++.|++|+|.++|.+.+.+........++
T Consensus 333 ~vsf~y~~~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~ 412 (567)
T COG1132 333 NVSFSYPGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDP 412 (567)
T ss_pred EEEEEcCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhccEEcccc
Confidence 3344555 456789999999999999999999999999999999999999999999998876665554444443
Q ss_pred hhhccccccceeeeeeec-------------------CC-CCcccccc----ccCHHHHHHHhccccCCCCCcEEEEcCC
Q psy2071 129 EEMDCQLGQEVGYSIRFE-------------------DC-SSPKTVLK----YMTDGMLLREGMSDPMLENYQVILLDEA 184 (302)
Q Consensus 129 ~~~~~~~~~~v~~~~~~~-------------------~~-~~~~~~~~----~lS~G~~qr~~la~al~~~p~lliLDE~ 184 (302)
..+..++.+|+.+..... .. ...++.+. .||||||||++||||++.+|++|||||
T Consensus 413 ~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~~ILILDE- 491 (567)
T COG1132 413 LLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILILDE- 491 (567)
T ss_pred eeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEec-
Confidence 123467777777664210 00 01244443 599999999999999999999999999
Q ss_pred CCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCc
Q psy2071 185 HERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGR 237 (302)
Q Consensus 185 ~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~ 237 (302)
+|+++|... ..+.+.+....+ +.|+++++|.+..+.. ||++.+|+ .|+
T Consensus 492 --aTSalD~~tE~~I~~~l~~l~~-~rT~iiIaHRlsti~~-aD~IiVl~-~G~ 540 (567)
T COG1132 492 --ATSALDTETEALIQDALKKLLK-GRTTLIIAHRLSTIKN-ADRIIVLD-NGR 540 (567)
T ss_pred --cccccCHHhHHHHHHHHHHHhc-CCEEEEEeccHhHHHh-CCEEEEEE-CCE
Confidence 999999888 677777765443 3477779999998887 99999999 665
No 325
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.93 E-value=1.6e-27 Score=232.29 Aligned_cols=164 Identities=13% Similarity=0.114 Sum_probs=121.0
Q ss_pred CChhHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhhcccccccee
Q psy2071 61 LPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVG 140 (302)
Q Consensus 61 lp~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 140 (302)
++...+++++++.|++|++++|+|+||||||||+++|+|+++|++|.+.+.+ .. +++...... .......++.+++.
T Consensus 334 ~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~-~~-~i~~v~q~~-~~~~~~~tv~e~l~ 410 (556)
T PRK11819 334 FGDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGE-TV-KLAYVDQSR-DALDPNKTVWEEIS 410 (556)
T ss_pred ECCeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-ce-EEEEEeCch-hhcCCCCCHHHHHH
Confidence 3333468999999999999999999999999999999999999999998732 11 111111110 00011122222221
Q ss_pred eee----------------eecCCC--CccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHH
Q psy2071 141 YSI----------------RFEDCS--SPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEV 201 (302)
Q Consensus 141 ~~~----------------~~~~~~--~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~l 201 (302)
+.. ...... ..++.+..|||||+||++||++++.+|++||||| ||+++|+.. ..+.++
T Consensus 411 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDE---Pt~~LD~~~~~~l~~~ 487 (556)
T PRK11819 411 GGLDIIKVGNREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDE---PTNDLDVETLRALEEA 487 (556)
T ss_pred hhcccccccccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcC---CCCCCCHHHHHHHHHH
Confidence 110 001111 1356678899999999999999999999999999 999999888 788888
Q ss_pred HHHcCCCcEEEEEEecCHHHHHhhccCCCeee
Q psy2071 202 IKQRADLKLVIMSATLDAGKFQQYFDNAPLMN 233 (302)
Q Consensus 202 l~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~ 233 (302)
+.... + ++|++|||++++..+||++++|+
T Consensus 488 l~~~~--~-tvi~vtHd~~~~~~~~d~i~~l~ 516 (556)
T PRK11819 488 LLEFP--G-CAVVISHDRWFLDRIATHILAFE 516 (556)
T ss_pred HHhCC--C-eEEEEECCHHHHHHhCCEEEEEE
Confidence 88763 4 78889999999999999999987
No 326
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.93 E-value=2.2e-27 Score=230.53 Aligned_cols=162 Identities=16% Similarity=0.152 Sum_probs=123.5
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHh---hh---hhccccccce
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRV---SE---EMDCQLGQEV 139 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~---~~---~~~~~~~~~v 139 (302)
.++++++.|++|+.++|+|+||||||||+++|+|+++|++|++.++|.+..........+.+ .+ .+..++.+|+
T Consensus 337 il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~~Ni 416 (529)
T TIGR02857 337 ALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAGTIAENI 416 (529)
T ss_pred cccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhheEEEcCCCcccCcCHHHHH
Confidence 68999999999999999999999999999999999999999999999876544332222222 11 2344666666
Q ss_pred eeeeeecC-------------------C-CCcccc----ccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH
Q psy2071 140 GYSIRFED-------------------C-SSPKTV----LKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM 195 (302)
Q Consensus 140 ~~~~~~~~-------------------~-~~~~~~----~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~ 195 (302)
.+...... . ...++. -..|||||+||+++|||++.+|+++|||| ||+++|+..
T Consensus 417 ~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~~ililDE---~ts~lD~~~ 493 (529)
T TIGR02857 417 RLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDE---PTAHLDAET 493 (529)
T ss_pred hccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCCCEEEEeC---cccccCHHH
Confidence 54321000 0 001222 24599999999999999999999999999 999999888
Q ss_pred -HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCee
Q psy2071 196 -GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLM 232 (302)
Q Consensus 196 -~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l 232 (302)
..+.+.+.... .+.|++++||+++.+ +.||++++|
T Consensus 494 ~~~i~~~l~~~~-~~~t~i~itH~~~~~-~~~d~i~~l 529 (529)
T TIGR02857 494 EALVTEALRALA-QGRTVLLVTHRLALA-ERADRIVVL 529 (529)
T ss_pred HHHHHHHHHHhc-CCCEEEEEecCHHHH-HhCCEEEeC
Confidence 66777776654 368999999999887 569998764
No 327
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.93 E-value=1.9e-27 Score=231.75 Aligned_cols=161 Identities=14% Similarity=0.126 Sum_probs=119.1
Q ss_pred hHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhhccccccceeee-
Q psy2071 64 FEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYS- 142 (302)
Q Consensus 64 ~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~- 142 (302)
..+++++++.|++|++++|+||||||||||+++|+|+++|++|.+.+.+ .. +++...+... ......++.+++.+.
T Consensus 335 ~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~-~~-~i~~v~q~~~-~~~~~~tv~e~l~~~~ 411 (552)
T TIGR03719 335 KLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGE-TV-KLAYVDQSRD-ALDPNKTVWEEISGGL 411 (552)
T ss_pred eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECC-ce-EEEEEeCCcc-ccCCCCcHHHHHHhhc
Confidence 3468899999999999999999999999999999999999999988732 11 1111111000 000111222221111
Q ss_pred ---------------eeecCCC--CccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHHH
Q psy2071 143 ---------------IRFEDCS--SPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVIKQ 204 (302)
Q Consensus 143 ---------------~~~~~~~--~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~ 204 (302)
+...... ..++.+..|||||+||++||++|+.+|++||||| ||+++|+.. ..+.+++..
T Consensus 412 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDE---Pt~~LD~~~~~~l~~~l~~ 488 (552)
T TIGR03719 412 DIIQLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDE---PTNDLDVETLRALEEALLE 488 (552)
T ss_pred cccccCcchHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeC---CCCCCCHHHHHHHHHHHHH
Confidence 0111111 1356678899999999999999999999999999 999999887 788888887
Q ss_pred cCCCcEEEEEEecCHHHHHhhccCCCeee
Q psy2071 205 RADLKLVIMSATLDAGKFQQYFDNAPLMN 233 (302)
Q Consensus 205 ~~~~~~~ii~~thd~~~~~~~~d~~~~l~ 233 (302)
.. + +||++|||++++..+||++++|+
T Consensus 489 ~~--~-~viivsHd~~~~~~~~d~i~~l~ 514 (552)
T TIGR03719 489 FA--G-CAVVISHDRWFLDRIATHILAFE 514 (552)
T ss_pred CC--C-eEEEEeCCHHHHHHhCCEEEEEE
Confidence 63 3 78899999999999999999997
No 328
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.93 E-value=4.2e-27 Score=230.16 Aligned_cols=167 Identities=16% Similarity=0.133 Sum_probs=124.8
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHH---hhh---hhccccccce
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQR---VSE---EMDCQLGQEV 139 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~---~~~---~~~~~~~~~v 139 (302)
+++++++.+++|++++|+||||||||||+++|+|+++|++|++.++|.+............ +.+ .+..++.+|+
T Consensus 330 ~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni 409 (569)
T PRK10789 330 ALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVANNI 409 (569)
T ss_pred cccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCeeccccHHHHH
Confidence 6899999999999999999999999999999999999999999999876543322221111 111 1233555555
Q ss_pred eeeeeec------------C-------C-CCccc----cccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH
Q psy2071 140 GYSIRFE------------D-------C-SSPKT----VLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM 195 (302)
Q Consensus 140 ~~~~~~~------------~-------~-~~~~~----~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~ 195 (302)
.+..... . . ...++ ....|||||+||++||||++.+|+++|||| ||+++|+..
T Consensus 410 ~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDE---pts~LD~~~ 486 (569)
T PRK10789 410 ALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDD---ALSAVDGRT 486 (569)
T ss_pred hcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEEC---ccccCCHHH
Confidence 4431100 0 0 00122 224599999999999999999999999999 999999887
Q ss_pred -HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 196 -GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 196 -~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
..+.+.+.... .+.|++++||+.+.+. .||++++|+ .|+.
T Consensus 487 ~~~i~~~l~~~~-~~~tii~itH~~~~~~-~~d~i~~l~-~G~i 527 (569)
T PRK10789 487 EHQILHNLRQWG-EGRTVIISAHRLSALT-EASEILVMQ-HGHI 527 (569)
T ss_pred HHHHHHHHHHHh-CCCEEEEEecchhHHH-cCCEEEEEe-CCEE
Confidence 67777777654 3689999999998775 699999998 5653
No 329
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.93 E-value=7.5e-27 Score=233.40 Aligned_cols=167 Identities=13% Similarity=0.147 Sum_probs=127.6
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHh---hh---hhccccccce
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRV---SE---EMDCQLGQEV 139 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~---~~---~~~~~~~~~v 139 (302)
+++++++.|++|+.++|+|+||||||||+++|+|++.|++|++.++|.+.+........+.+ .+ .+..++.+|+
T Consensus 472 il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~eNi 551 (694)
T TIGR01846 472 VLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNI 551 (694)
T ss_pred ccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHhCeEEccCCeehhhhHHHHH
Confidence 68999999999999999999999999999999999999999999999876544333222222 11 2234555555
Q ss_pred eeeeeec-------------------CC-CCcccc----ccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH
Q psy2071 140 GYSIRFE-------------------DC-SSPKTV----LKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM 195 (302)
Q Consensus 140 ~~~~~~~-------------------~~-~~~~~~----~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~ 195 (302)
.+.-... .. ...++. ...|||||+||++|||||+.+|++||||| ||+++|+..
T Consensus 552 ~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~~ililDE---pts~LD~~~ 628 (694)
T TIGR01846 552 ALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDE---ATSALDYES 628 (694)
T ss_pred hcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEC---CCcCCCHHH
Confidence 4421000 00 011222 34699999999999999999999999999 999999888
Q ss_pred -HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 196 -GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 196 -~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
..+.+.+.... .+.|+|++||+.+.+. .||++++|+ .|+.
T Consensus 629 ~~~i~~~l~~~~-~~~t~i~itH~~~~~~-~~d~ii~l~-~G~i 669 (694)
T TIGR01846 629 EALIMRNMREIC-RGRTVIIIAHRLSTVR-ACDRIIVLE-KGQI 669 (694)
T ss_pred HHHHHHHHHHHh-CCCEEEEEeCChHHHH-hCCEEEEEe-CCEE
Confidence 67777777653 3689999999999886 499999998 6654
No 330
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.93 E-value=3.4e-27 Score=233.18 Aligned_cols=169 Identities=17% Similarity=0.190 Sum_probs=122.5
Q ss_pred CCChhHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhhccccccce
Q psy2071 60 TLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEV 139 (302)
Q Consensus 60 ~lp~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 139 (302)
.++...+++++++.|.+|++++|+||||||||||+++|+|+++|++|.+.+ |... .++...+.. .......++.+++
T Consensus 328 ~~~~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~-~i~y~~q~~-~~l~~~~tv~e~l 404 (635)
T PRK11147 328 QIDGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKL-EVAYFDQHR-AELDPEKTVMDNL 404 (635)
T ss_pred EECCeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCc-EEEEEeCcc-cccCCCCCHHHHH
Confidence 343334679999999999999999999999999999999999999999987 4221 111111100 0001111222222
Q ss_pred eee----------------e-eecCC-CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHH
Q psy2071 140 GYS----------------I-RFEDC-SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKE 200 (302)
Q Consensus 140 ~~~----------------~-~~~~~-~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ 200 (302)
.+. + .+... ...++.+..|||||+||++||++|+.+|++||||| ||+++|+.. ..+.+
T Consensus 405 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLlLDE---Pt~~LD~~~~~~l~~ 481 (635)
T PRK11147 405 AEGKQEVMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILDE---PTNDLDVETLELLEE 481 (635)
T ss_pred HhhcccccccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEcC---CCCCCCHHHHHHHHH
Confidence 111 0 11110 12356678899999999999999999999999999 999999877 77888
Q ss_pred HHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCc
Q psy2071 201 VIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGR 237 (302)
Q Consensus 201 ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~ 237 (302)
++... +.|||++|||.+++..+||++++++-.|.
T Consensus 482 ~l~~~---~~tvi~vSHd~~~~~~~~d~i~~l~~~g~ 515 (635)
T PRK11147 482 LLDSY---QGTVLLVSHDRQFVDNTVTECWIFEGNGK 515 (635)
T ss_pred HHHhC---CCeEEEEECCHHHHHHhcCEEEEEeCCCe
Confidence 88765 34899999999999999999999863454
No 331
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.93 E-value=4e-27 Score=228.65 Aligned_cols=149 Identities=17% Similarity=0.155 Sum_probs=115.7
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHh---hh---hhccccccce
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRV---SE---EMDCQLGQEV 139 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~---~~---~~~~~~~~~v 139 (302)
+++++++.|++|+.++|+||||||||||+++++|+++|++|++.++|.+.+.. .....+.+ .+ .+..++.+|+
T Consensus 350 vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~-~~~lr~~i~~V~Q~~~lF~~TI~eNI 428 (529)
T TIGR02868 350 VLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSL-QDELRRRISVFAQDAHLFDTTVRDNL 428 (529)
T ss_pred eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhH-HHHHHhheEEEccCcccccccHHHHH
Confidence 68999999999999999999999999999999999999999999999887665 44443333 22 2355777777
Q ss_pred eeeeeecC--------------------CCCccccc----cccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH
Q psy2071 140 GYSIRFED--------------------CSSPKTVL----KYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM 195 (302)
Q Consensus 140 ~~~~~~~~--------------------~~~~~~~~----~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~ 195 (302)
.+.-.... ....++.+ ..||||||||++||||++.+|+++|||| ||+++|...
T Consensus 429 ~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~iliLDE---~TSaLD~~t 505 (529)
T TIGR02868 429 RLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDE---PTEHLDAGT 505 (529)
T ss_pred hccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCCEEEEeC---CcccCCHHH
Confidence 66421000 00113333 3499999999999999999999999999 999999888
Q ss_pred -HHHHHHHHHcCCCcEEEEEEecCH
Q psy2071 196 -GVLKEVIKQRADLKLVIMSATLDA 219 (302)
Q Consensus 196 -~~l~~ll~~~~~~~~~ii~~thd~ 219 (302)
..+.+.+.... .+.|++++||++
T Consensus 506 e~~I~~~l~~~~-~~~TvIiItHrl 529 (529)
T TIGR02868 506 ESELLEDLLAAL-SGKTVVVITHHL 529 (529)
T ss_pred HHHHHHHHHHhc-CCCEEEEEecCC
Confidence 66777766543 367999999973
No 332
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.93 E-value=4.4e-27 Score=230.41 Aligned_cols=166 Identities=17% Similarity=0.235 Sum_probs=125.9
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHh---hh---hhccccccce
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRV---SE---EMDCQLGQEV 139 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~---~~---~~~~~~~~~v 139 (302)
+++++++.+++|+.++|+|+||||||||+++|+|++.|++|.+.++|.+..........+.+ .+ .+..++.+|+
T Consensus 347 il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni 426 (571)
T TIGR02203 347 ALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDVVLFNDTIANNI 426 (571)
T ss_pred cccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhceEEccCcccccccHHHHH
Confidence 57899999999999999999999999999999999999999999999775544332222221 11 2344566665
Q ss_pred eeeee--ec-----------C-------C-CCccccc----cccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHH
Q psy2071 140 GYSIR--FE-----------D-------C-SSPKTVL----KYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDIL 194 (302)
Q Consensus 140 ~~~~~--~~-----------~-------~-~~~~~~~----~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~ 194 (302)
.+.-. .. . . ...++.+ ..||||||||++||||++.+|+++|||| ||+++|..
T Consensus 427 ~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~~~illLDE---pts~LD~~ 503 (571)
T TIGR02203 427 AYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDE---ATSALDNE 503 (571)
T ss_pred hcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeC---ccccCCHH
Confidence 54321 00 0 0 0112222 3599999999999999999999999999 99999988
Q ss_pred H-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCc
Q psy2071 195 M-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGR 237 (302)
Q Consensus 195 ~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~ 237 (302)
. +.+.+.+....+ +.|+|++||+...+ ..||++++|+ .|+
T Consensus 504 ~~~~i~~~L~~~~~-~~tiIiitH~~~~~-~~~D~ii~l~-~g~ 544 (571)
T TIGR02203 504 SERLVQAALERLMQ-GRTTLVIAHRLSTI-EKADRIVVMD-DGR 544 (571)
T ss_pred HHHHHHHHHHHHhC-CCEEEEEehhhHHH-HhCCEEEEEe-CCE
Confidence 8 667777776533 57999999999665 6799999998 555
No 333
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.93 E-value=4.9e-27 Score=230.28 Aligned_cols=167 Identities=17% Similarity=0.196 Sum_probs=125.9
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHH---h---hhhhccccccce
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQR---V---SEEMDCQLGQEV 139 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~---~---~~~~~~~~~~~v 139 (302)
.++++++.+++||.++|+|+||||||||+++|+|+++|++|++.++|.+..........+. + ...+..++.+|+
T Consensus 355 iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni 434 (576)
T TIGR02204 355 ALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFAASVMENI 434 (576)
T ss_pred cccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHhceEEccCCccccccHHHHH
Confidence 6889999999999999999999999999999999999999999999976543322222111 1 112344556665
Q ss_pred eeeeeec-------------------CC-CCccc----cccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH
Q psy2071 140 GYSIRFE-------------------DC-SSPKT----VLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM 195 (302)
Q Consensus 140 ~~~~~~~-------------------~~-~~~~~----~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~ 195 (302)
.+.-... .. ...++ .-..|||||+||+++|||++.+|+++|||| ||+++|+..
T Consensus 435 ~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~~~ililDE---pts~lD~~~ 511 (576)
T TIGR02204 435 RYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLDE---ATSALDAES 511 (576)
T ss_pred hcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHhCCCeEEEeC---cccccCHHH
Confidence 5432100 00 00122 234599999999999999999999999999 999999888
Q ss_pred -HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 196 -GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 196 -~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
+.+.+.+..... +.|+|++||+.+.+ ..||++++++ .|+.
T Consensus 512 ~~~i~~~l~~~~~-~~t~IiitH~~~~~-~~~d~vi~l~-~g~~ 552 (576)
T TIGR02204 512 EQLVQQALETLMK-GRTTLIIAHRLATV-LKADRIVVMD-QGRI 552 (576)
T ss_pred HHHHHHHHHHHhC-CCEEEEEecchHHH-HhCCEEEEEE-CCEE
Confidence 667777766533 68999999999776 5799999998 6653
No 334
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.93 E-value=7.5e-27 Score=191.05 Aligned_cols=175 Identities=15% Similarity=0.197 Sum_probs=130.9
Q ss_pred cCCChhHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEee-cCchhhhHHHHHH--------Hhhh
Q psy2071 59 ITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVAC-TQPRRVAAMSVAQ--------RVSE 129 (302)
Q Consensus 59 ~~lp~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~-~~~~~~~~~~~~~--------~~~~ 129 (302)
.++.-|.+++++++++.+||.-+||||||+||||++..|+|..+|+.|++.+.| .+..+.....+++ ....
T Consensus 13 VsF~GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~GIGRKFQ~PtV 92 (249)
T COG4674 13 VSFGGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAGIGRKFQKPTV 92 (249)
T ss_pred EEEcceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHhccCccccCCee
Confidence 456678889999999999999999999999999999999999999999999998 5543332222221 1111
Q ss_pred hhccccccceeeeeeecCC---------------------------CCccccccccCHHHHHHHhccccCCCCCcEEEEc
Q psy2071 130 EMDCQLGQEVGYSIRFEDC---------------------------SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLD 182 (302)
Q Consensus 130 ~~~~~~~~~v~~~~~~~~~---------------------------~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLD 182 (302)
+...++.+|+......+.. ...+.....||.||||++.|..-++.+|++|+||
T Consensus 93 fe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqKQwLEIGMll~Q~P~lLLlD 172 (249)
T COG4674 93 FENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLD 172 (249)
T ss_pred hhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchhhhhhhheeeccCCcEEEec
Confidence 2233455554433211110 0122334559999999999999999999999999
Q ss_pred CCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 183 EAHERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 183 E~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
| |.+++-... ...-++++..+. +.+||++.|||+++.+++++|.+|+ .|..
T Consensus 173 E---PvAGMTd~Et~~taeLl~~la~-~hsilVVEHDM~Fvr~~A~~VTVlh-~G~V 224 (249)
T COG4674 173 E---PVAGMTDAETEKTAELLKSLAG-KHSILVVEHDMGFVREIADKVTVLH-EGSV 224 (249)
T ss_pred C---ccCCCcHHHHHHHHHHHHHHhc-CceEEEEeccHHHHHHhhheeEEEe-ccce
Confidence 9 999976444 667777776654 6788899999999999999999999 6654
No 335
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.93 E-value=2.9e-27 Score=212.16 Aligned_cols=182 Identities=18% Similarity=0.231 Sum_probs=131.8
Q ss_pred hhHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccc-----cCCCEEEeecCchhhhH-------------HHHH
Q psy2071 63 VFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSK-----SVGAKAVACTQPRRVAA-------------MSVA 124 (302)
Q Consensus 63 ~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~-----~~G~~~i~~~~~~~~~~-------------~~~~ 124 (302)
...+.++|++.|++||.++|+|++|||||-....++++++. -+|++.+.|.+.-..+. +++.
T Consensus 22 ~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~~lr~iRG~~I~MIFQE 101 (534)
T COG4172 22 TVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQLRGVRGNKIGMIFQE 101 (534)
T ss_pred ceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHHHHhhhcccceEEEecc
Confidence 45578999999999999999999999999999999998764 24789998876422211 1111
Q ss_pred HHhhhhhccccccceeeeeeecCC-------------------C----CccccccccCHHHHHHHhccccCCCCCcEEEE
Q psy2071 125 QRVSEEMDCQLGQEVGYSIRFEDC-------------------S----SPKTVLKYMTDGMLLREGMSDPMLENYQVILL 181 (302)
Q Consensus 125 ~~~~~~~~~~~~~~v~~~~~~~~~-------------------~----~~~~~~~~lS~G~~qr~~la~al~~~p~lliL 181 (302)
...+..+-.+++..+...++.+.. . ..+.....|||||+||++||.||+.+|++||.
T Consensus 102 PMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGqRQRVMIAMALan~P~lLIA 181 (534)
T COG4172 102 PMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQRQRVMIAMALANEPDLLIA 181 (534)
T ss_pred cccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcchhhHHHHHHHHcCCCCeEee
Confidence 111112222333333333322211 0 11234566999999999999999999999999
Q ss_pred cCCCCCCcchHHHH-HHHHHHHHHc-CCCcEEEEEEecCHHHHHhhccCCCeeeecCc----CCccceeecCC
Q psy2071 182 DEAHERTLATDILM-GVLKEVIKQR-ADLKLVIMSATLDAGKFQQYFDNAPLMNVPGR----THPVEIFYTPE 248 (302)
Q Consensus 182 DE~~~p~~~lD~~~-~~l~~ll~~~-~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~----~~~~~~~~~~~ 248 (302)
|| ||.++|... ..|.++++.+ .+.|+.++++|||+..+.+++|+|+||. .|+ +...++|..|.
T Consensus 182 DE---PTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~-~G~ivE~~~t~~lF~~Pq 250 (534)
T COG4172 182 DE---PTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQ-HGEIVETGTTETLFAAPQ 250 (534)
T ss_pred cC---CcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEe-ccEEeecCcHHHHhhCCC
Confidence 99 999999777 7777887754 4679999999999999999999999998 443 34555555544
No 336
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.93 E-value=1e-26 Score=213.96 Aligned_cols=165 Identities=15% Similarity=0.198 Sum_probs=128.1
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhh------hhhccccccce
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVS------EEMDCQLGQEV 139 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~------~~~~~~~~~~v 139 (302)
.+++++|++.+|+.++||||+|||||||.+.+.|..+|.+|.+.++|.+.+.+......+.+. +.+..|+.+|+
T Consensus 351 il~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~GTIaeNI 430 (580)
T COG4618 351 ILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTIAENI 430 (580)
T ss_pred ceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCcccceecCCcHHHHH
Confidence 478999999999999999999999999999999999999999999998776554433332221 12233445554
Q ss_pred eeeeeecCCC-----------------------Ccccccc----ccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchH
Q psy2071 140 GYSIRFEDCS-----------------------SPKTVLK----YMTDGMLLREGMSDPMLENYQVILLDEAHERTLATD 192 (302)
Q Consensus 140 ~~~~~~~~~~-----------------------~~~~~~~----~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD 192 (302)
.- |.... ..+|.+. .||||||||+++||||-.+|.+++||| |.+++|
T Consensus 431 aR---f~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvVLDE---PNsNLD 504 (580)
T COG4618 431 AR---FGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDE---PNSNLD 504 (580)
T ss_pred Hh---ccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEEecC---CCCCcc
Confidence 32 22111 1233332 399999999999999999999999999 999999
Q ss_pred HHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 193 ILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 193 ~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
..- ..+.+.+...+..|.|++++||-...+ ..+|++.+|+ .|+.
T Consensus 505 ~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L-~~~Dkilvl~-~G~~ 549 (580)
T COG4618 505 SEGEAALAAAILAAKARGGTVVVIAHRPSAL-ASVDKILVLQ-DGRI 549 (580)
T ss_pred hhHHHHHHHHHHHHHHcCCEEEEEecCHHHH-hhcceeeeec-CChH
Confidence 777 556666666667789999999998755 5789999999 7765
No 337
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.93 E-value=1.5e-26 Score=225.66 Aligned_cols=167 Identities=19% Similarity=0.206 Sum_probs=120.6
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHH---hhh---hhccccccce
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQR---VSE---EMDCQLGQEV 139 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~---~~~---~~~~~~~~~v 139 (302)
+++++++.+++|++++|+||||||||||+++|+|++.|++|++.++|.+.+.......... +.+ .+..+..++.
T Consensus 357 ~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~ 436 (555)
T TIGR01194 357 ALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDE 436 (555)
T ss_pred eeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhccc
Confidence 5899999999999999999999999999999999999999999999877554332222111 111 1122222221
Q ss_pred ee---------ee---eecC----CC-CccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHH-
Q psy2071 140 GY---------SI---RFED----CS-SPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKE- 200 (302)
Q Consensus 140 ~~---------~~---~~~~----~~-~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~- 200 (302)
.- .+ .... .+ ..++ ...|||||+||++||||++.+|+++|||| ||+++|+.. ..+.+
T Consensus 437 ~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t-~~~LSgGq~qRlalaRall~~~~ililDE---~ts~LD~~~~~~i~~~ 512 (555)
T TIGR01194 437 GEHASLDNAQQYLQRLEIADKVKIEDGGFST-TTALSTGQQKRLALICAWLEDRPILLFDE---WAADQDPAFKRFFYEE 512 (555)
T ss_pred ccchhHHHHHHHHHHcCCchhhcccccccCC-cccCCHHHHHHHHHHHHHHcCCCEEEEeC---CccCCCHHHHHHHHHH
Confidence 00 00 0000 00 0112 26799999999999999999999999999 999999888 55554
Q ss_pred HHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 201 VIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 201 ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
+++.....+.|++++||+.+.+ +.||++++|+ .|+.
T Consensus 513 l~~~~~~~~~tiiiisH~~~~~-~~~d~i~~l~-~G~i 548 (555)
T TIGR01194 513 LLPDLKRQGKTIIIISHDDQYF-ELADQIIKLA-AGCI 548 (555)
T ss_pred HHHHHHhCCCEEEEEeccHHHH-HhCCEEEEEE-CCEE
Confidence 4443333478999999999865 5899999998 6653
No 338
>PLN03211 ABC transporter G-25; Provisional
Probab=99.93 E-value=2.3e-27 Score=234.12 Aligned_cols=174 Identities=16% Similarity=0.193 Sum_probs=127.3
Q ss_pred CChhHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhccccc--CCCEEEeecCchhhh---HHHHHHHhhhhhcccc
Q psy2071 61 LPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKS--VGAKAVACTQPRRVA---AMSVAQRVSEEMDCQL 135 (302)
Q Consensus 61 lp~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~--~G~~~i~~~~~~~~~---~~~~~~~~~~~~~~~~ 135 (302)
++...+++++++.+++||+++|+||||||||||+++|+|..+|+ +|++.++|.+..... ...+.+........++
T Consensus 78 ~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~~~~~~i~yv~Q~~~l~~~lTV 157 (659)
T PLN03211 78 IQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRTGFVTQDDILYPHLTV 157 (659)
T ss_pred CCCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECchhhccceEEECcccccCCcCCH
Confidence 33445789999999999999999999999999999999998885 899999986532100 0001111111112344
Q ss_pred ccceeeeeeec---------------------CC-CCc-----cccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCC
Q psy2071 136 GQEVGYSIRFE---------------------DC-SSP-----KTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERT 188 (302)
Q Consensus 136 ~~~v~~~~~~~---------------------~~-~~~-----~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~ 188 (302)
.+++.+..... +. ... +.....||||||||++||++|+.+|++||||| ||
T Consensus 158 ~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDE---Pt 234 (659)
T PLN03211 158 RETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDE---PT 234 (659)
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeC---CC
Confidence 44443221000 00 001 22345699999999999999999999999999 99
Q ss_pred cchHHHH-HHHHHHHHHcCCCcEEEEEEecCHH-HHHhhccCCCeeeecCcC
Q psy2071 189 LATDILM-GVLKEVIKQRADLKLVIMSATLDAG-KFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 189 ~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~-~~~~~~d~~~~l~i~g~~ 238 (302)
+++|... ..+.+++++..+.|.||+++||+++ .+.++||++++|+ .|+.
T Consensus 235 sgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL~-~G~i 285 (659)
T PLN03211 235 SGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLS-EGRC 285 (659)
T ss_pred CCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEec-CCcE
Confidence 9999887 7788888876666899999999998 5889999999998 5543
No 339
>KOG0057|consensus
Probab=99.92 E-value=1.4e-26 Score=214.85 Aligned_cols=170 Identities=16% Similarity=0.187 Sum_probs=129.7
Q ss_pred ChhHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhh------hhhcccc
Q psy2071 62 PVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVS------EEMDCQL 135 (302)
Q Consensus 62 p~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~------~~~~~~~ 135 (302)
|...+++++++.|++|+-+||+|+|||||||+++++..++. .+|+|.|+|.+.+.+...++.+-++ ..++.++
T Consensus 363 ~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFndTI 441 (591)
T KOG0057|consen 363 PKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFNDTI 441 (591)
T ss_pred CCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhheeEeCCcccccchhH
Confidence 34447899999999999999999999999999999999998 9999999999877665444444332 2345566
Q ss_pred ccceeeeeeecC-------------------C-CCcc----ccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcch
Q psy2071 136 GQEVGYSIRFED-------------------C-SSPK----TVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLAT 191 (302)
Q Consensus 136 ~~~v~~~~~~~~-------------------~-~~~~----~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~l 191 (302)
..|+.|.-..-. . .... .+-..||||||||+++|||++.+|+++++|| +|+++
T Consensus 442 l~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~DE---aTS~L 518 (591)
T KOG0057|consen 442 LYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLDE---ATSAL 518 (591)
T ss_pred HHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEecC---ccccc
Confidence 667766531100 0 0111 2234499999999999999999999999999 99999
Q ss_pred HHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 192 DILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 192 D~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
|... ..+.+.+.. ...+.|+|++-|+.+.+. -||+|++++ .|+.
T Consensus 519 D~~TE~~i~~~i~~-~~~~rTvI~IvH~l~ll~-~~DkI~~l~-nG~v 563 (591)
T KOG0057|consen 519 DSETEREILDMIMD-VMSGRTVIMIVHRLDLLK-DFDKIIVLD-NGTV 563 (591)
T ss_pred chhhHHHHHHHHHH-hcCCCeEEEEEecchhHh-cCCEEEEEE-CCee
Confidence 9776 444454444 234789999999999886 589999999 6653
No 340
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.92 E-value=2.4e-26 Score=243.13 Aligned_cols=168 Identities=15% Similarity=0.200 Sum_probs=126.3
Q ss_pred HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEe-ecCchhhhHHHHHH---Hhhh---hhcccccc
Q psy2071 65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVA-CTQPRRVAAMSVAQ---RVSE---EMDCQLGQ 137 (302)
Q Consensus 65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~-~~~~~~~~~~~~~~---~~~~---~~~~~~~~ 137 (302)
.+++++++.|++|++++|+||||||||||+++|+|++.|++|+|.++ |.+..........+ .+.+ .+..++.+
T Consensus 399 ~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~TI~e 478 (1466)
T PTZ00265 399 EIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKN 478 (1466)
T ss_pred ceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhCCHHHHHHhccEecccccchhccHHH
Confidence 47899999999999999999999999999999999999999999995 45443222211111 1222 12345666
Q ss_pred ceeeeeee------------------------------------------------------------------------
Q psy2071 138 EVGYSIRF------------------------------------------------------------------------ 145 (302)
Q Consensus 138 ~v~~~~~~------------------------------------------------------------------------ 145 (302)
++.+....
T Consensus 479 NI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l 558 (1466)
T PTZ00265 479 NIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLI 558 (1466)
T ss_pred HHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhCc
Confidence 66553200
Q ss_pred c----CC-CCc----cccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcCC-CcEEEEE
Q psy2071 146 E----DC-SSP----KTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVIKQRAD-LKLVIMS 214 (302)
Q Consensus 146 ~----~~-~~~----~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~-~~~~ii~ 214 (302)
+ .. ... ......|||||+||++|||||+.+|++||||| ||+++|+.. ..+.+.+.+..+ .+.|+|+
T Consensus 559 ~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDE---pTSaLD~~se~~i~~~L~~~~~~~g~TvIi 635 (1466)
T PTZ00265 559 HDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDE---ATSSLDNKSEYLVQKTINNLKGNENRITII 635 (1466)
T ss_pred HHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeC---cccccCHHHHHHHHHHHHHHhhcCCCEEEE
Confidence 0 00 000 12234599999999999999999999999999 999999888 778888877643 4789999
Q ss_pred EecCHHHHHhhccCCCeeeecCc
Q psy2071 215 ATLDAGKFQQYFDNAPLMNVPGR 237 (302)
Q Consensus 215 ~thd~~~~~~~~d~~~~l~i~g~ 237 (302)
+||+++.+ +.||++++|+ .|+
T Consensus 636 IsHrls~i-~~aD~Iivl~-~g~ 656 (1466)
T PTZ00265 636 IAHRLSTI-RYANTIFVLS-NRE 656 (1466)
T ss_pred EeCCHHHH-HhCCEEEEEe-CCc
Confidence 99999987 6899999998 663
No 341
>KOG0055|consensus
Probab=99.92 E-value=2.2e-26 Score=231.39 Aligned_cols=170 Identities=18% Similarity=0.252 Sum_probs=139.8
Q ss_pred ChhHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhh---h---hhcccc
Q psy2071 62 PVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVS---E---EMDCQL 135 (302)
Q Consensus 62 p~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~---~---~~~~~~ 135 (302)
|...+++++++.|++|+.++|+||+||||||.+-+|-..|.|+.|.+.++|.+.+.+....+...++ + .++.++
T Consensus 1001 P~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TI 1080 (1228)
T KOG0055|consen 1001 PDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTI 1080 (1228)
T ss_pred CCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhcceeccCchhhcccH
Confidence 4566799999999999999999999999999999999999999999999999988877766666543 3 346789
Q ss_pred ccceeeeeeecC--------------------CCCcccccc----ccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcch
Q psy2071 136 GQEVGYSIRFED--------------------CSSPKTVLK----YMTDGMLLREGMSDPMLENYQVILLDEAHERTLAT 191 (302)
Q Consensus 136 ~~~v~~~~~~~~--------------------~~~~~~~~~----~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~l 191 (302)
++|+.|...--. ....+|.+. .||||||||++||||++.||++||||| -|++|
T Consensus 1081 rENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilRnPkILLLDE---ATSAL 1157 (1228)
T KOG0055|consen 1081 RENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILRNPKILLLDE---ATSAL 1157 (1228)
T ss_pred HHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHcCCCeeeeec---cchhh
Confidence 999999831100 001234333 499999999999999999999999999 89999
Q ss_pred HHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCc
Q psy2071 192 DILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGR 237 (302)
Q Consensus 192 D~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~ 237 (302)
|... ..+.+.+++... |.|.|++.|-+..+. .||.|+|++ .|+
T Consensus 1158 DseSErvVQeALd~a~~-gRT~IvIAHRLSTIq-naD~I~Vi~-~G~ 1201 (1228)
T KOG0055|consen 1158 DSESERVVQEALDRAME-GRTTIVIAHRLSTIQ-NADVIAVLK-NGK 1201 (1228)
T ss_pred hhhhHHHHHHHHHHhhc-CCcEEEEecchhhhh-cCCEEEEEE-CCE
Confidence 9777 788888887655 566667799999885 699999999 664
No 342
>PLN03073 ABC transporter F family; Provisional
Probab=99.92 E-value=2.6e-26 Score=228.02 Aligned_cols=164 Identities=15% Similarity=0.128 Sum_probs=116.9
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHH--------HHH----hhhhhcc
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSV--------AQR----VSEEMDC 133 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~--------~~~----~~~~~~~ 133 (302)
+++++++.|.+|++++|+||||||||||+++|+|+++|++|.+.+.+.. +++...+ ... .......
T Consensus 524 il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~~--~igyv~Q~~~~~l~~~~~~~~~~~~~~~~ 601 (718)
T PLN03073 524 LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAKV--RMAVFSQHHVDGLDLSSNPLLYMMRCFPG 601 (718)
T ss_pred eEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCce--eEEEEeccccccCCcchhHHHHHHHhcCC
Confidence 5789999999999999999999999999999999999999998764321 1110000 000 0000000
Q ss_pred ccccceeeeeeecCCC--CccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcE
Q psy2071 134 QLGQEVGYSIRFEDCS--SPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVIKQRADLKL 210 (302)
Q Consensus 134 ~~~~~v~~~~~~~~~~--~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~ 210 (302)
...+.+...+...... ..+..+..|||||+||++||++++.+|++||||| ||+++|+.. ..+.+.+... .+
T Consensus 602 ~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDE---PT~~LD~~s~~~l~~~L~~~--~g- 675 (718)
T PLN03073 602 VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDE---PSNHLDLDAVEALIQGLVLF--QG- 675 (718)
T ss_pred CCHHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEEcC---CCCCCCHHHHHHHHHHHHHc--CC-
Confidence 0000010001111111 2345678899999999999999999999999999 999999877 5566666544 24
Q ss_pred EEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 211 VIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 211 ~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
|||++|||.+++..+||++++|. .|+.
T Consensus 676 tvIivSHd~~~i~~~~drv~~l~-~G~i 702 (718)
T PLN03073 676 GVLMVSHDEHLISGSVDELWVVS-EGKV 702 (718)
T ss_pred EEEEEECCHHHHHHhCCEEEEEE-CCEE
Confidence 89999999999999999999998 6653
No 343
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.92 E-value=8e-25 Score=223.90 Aligned_cols=192 Identities=45% Similarity=0.774 Sum_probs=173.3
Q ss_pred HhhcCCChhHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCC-CEEEeecCchhhhHHHHHHHhhhhhccc
Q psy2071 56 RKRITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVG-AKAVACTQPRRVAAMSVAQRVSEEMDCQ 134 (302)
Q Consensus 56 ~~r~~lp~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G-~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 134 (302)
..+..||++..+++|...|..+++++|.|++||||||++++++-... .| ...|.+++|+++++.+++.+++.+++..
T Consensus 68 ~~~~~LPi~~~r~~Il~ai~~~~VviI~GeTGSGKTTqlPq~lle~g--~g~~g~I~~TQPRRlAArsLA~RVA~El~~~ 145 (1294)
T PRK11131 68 TYPENLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICLELG--RGVKGLIGHTQPRRLAARTVANRIAEELETE 145 (1294)
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCeEEEECCCCCCHHHHHHHHHHHcC--CCCCCceeeCCCcHHHHHHHHHHHHHHHhhh
Confidence 34567999999999999999999999999999999999999876542 22 3467889999999999999999999988
Q ss_pred cccceeeeeeecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEE
Q psy2071 135 LGQEVGYSIRFEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILMGVLKEVIKQRADLKLVIMS 214 (302)
Q Consensus 135 ~~~~v~~~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~~~l~~ll~~~~~~~~~ii~ 214 (302)
++..+||.++++.....++.+.+++.|...+......++.+.++||+||+||++.++|.+...+++++..+.+.++++++
T Consensus 146 lG~~VGY~vrf~~~~s~~t~I~v~TpG~LL~~l~~d~~Ls~~~~IIIDEAHERsLn~DfLLg~Lk~lL~~rpdlKvILmS 225 (1294)
T PRK11131 146 LGGCVGYKVRFNDQVSDNTMVKLMTDGILLAEIQQDRLLMQYDTIIIDEAHERSLNIDFILGYLKELLPRRPDLKVIITS 225 (1294)
T ss_pred hcceeceeecCccccCCCCCEEEEChHHHHHHHhcCCccccCcEEEecCccccccccchHHHHHHHhhhcCCCceEEEee
Confidence 99999999999888888899999999999998888889999999999999999999998888888888777778999999
Q ss_pred EecCHHHHHhhccCCCeeeecCcCCccceeecCCC
Q psy2071 215 ATLDAGKFQQYFDNAPLMNVPGRTHPVEIFYTPEP 249 (302)
Q Consensus 215 ~thd~~~~~~~~d~~~~l~i~g~~~~~~~~~~~~~ 249 (302)
+|.+.+.+.+++...+++.++|+.+|++++|.+..
T Consensus 226 ATid~e~fs~~F~~apvI~V~Gr~~pVei~y~p~~ 260 (1294)
T PRK11131 226 ATIDPERFSRHFNNAPIIEVSGRTYPVEVRYRPIV 260 (1294)
T ss_pred CCCCHHHHHHHcCCCCEEEEcCccccceEEEeecc
Confidence 99999999999999999999999999999998753
No 344
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.92 E-value=1.3e-26 Score=245.01 Aligned_cols=174 Identities=16% Similarity=0.173 Sum_probs=135.0
Q ss_pred HhhcCCC---hhHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccc-----------------------------
Q psy2071 56 RKRITLP---VFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSK----------------------------- 103 (302)
Q Consensus 56 ~~r~~lp---~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~----------------------------- 103 (302)
+..+.+| ...+++++++.|++|+.++|+|+|||||||++++|+|++.|
T Consensus 1170 nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1249 (1466)
T PTZ00265 1170 DVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQN 1249 (1466)
T ss_pred EEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccccccccccccccccccc
Confidence 3444554 23478999999999999999999999999999999999998
Q ss_pred -------------------------cCCCEEEeecCchhhhHHHHHHHh---hh---hhccccccceeeeeeecC-----
Q psy2071 104 -------------------------SVGAKAVACTQPRRVAAMSVAQRV---SE---EMDCQLGQEVGYSIRFED----- 147 (302)
Q Consensus 104 -------------------------~~G~~~i~~~~~~~~~~~~~~~~~---~~---~~~~~~~~~v~~~~~~~~----- 147 (302)
++|.|.++|.+.+.+....+...+ .+ .+..++.+|+.|......
T Consensus 1250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~~at~eeI~ 1329 (1466)
T PTZ00265 1250 VGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDATREDVK 1329 (1466)
T ss_pred cccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccccHHHHHhcCCCCCCHHHHH
Confidence 589999999987765544444333 22 345678888877631100
Q ss_pred --------------C-CCccccc----cccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcC-
Q psy2071 148 --------------C-SSPKTVL----KYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVIKQRA- 206 (302)
Q Consensus 148 --------------~-~~~~~~~----~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~- 206 (302)
. ...++.+ ..||||||||++|||||+.+|++||||| +|+++|... ..+.+.+....
T Consensus 1330 ~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDE---aTSaLD~~sE~~I~~~L~~~~~ 1406 (1466)
T PTZ00265 1330 RACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDE---ATSSLDSNSEKLIEKTIVDIKD 1406 (1466)
T ss_pred HHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeC---cccccCHHHHHHHHHHHHHHhc
Confidence 0 0113333 3499999999999999999999999999 999999888 67777777653
Q ss_pred CCcEEEEEEecCHHHHHhhccCCCeee
Q psy2071 207 DLKLVIMSATLDAGKFQQYFDNAPLMN 233 (302)
Q Consensus 207 ~~~~~ii~~thd~~~~~~~~d~~~~l~ 233 (302)
..+.|+|++||.+..+. .||+|++|+
T Consensus 1407 ~~~~TvIiIaHRlsti~-~aD~Ivvl~ 1432 (1466)
T PTZ00265 1407 KADKTIITIAHRIASIK-RSDKIVVFN 1432 (1466)
T ss_pred cCCCEEEEEechHHHHH-hCCEEEEEe
Confidence 24689999999998875 699999998
No 345
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.92 E-value=3.4e-26 Score=222.83 Aligned_cols=168 Identities=17% Similarity=0.149 Sum_probs=119.3
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHh---hh---hhccccccc-
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRV---SE---EMDCQLGQE- 138 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~---~~---~~~~~~~~~- 138 (302)
+++++++.|++|+.++|+||||||||||+++|+|+++|++|++.++|.+..........+.+ .+ .+..++.++
T Consensus 338 ~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~ 417 (547)
T PRK10522 338 SVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPEG 417 (547)
T ss_pred EEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHHhhcccc
Confidence 58999999999999999999999999999999999999999999998765432222221111 11 111122221
Q ss_pred -------eeee---eeecCCCC-ccc--cccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHHH
Q psy2071 139 -------VGYS---IRFEDCSS-PKT--VLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVIKQ 204 (302)
Q Consensus 139 -------v~~~---~~~~~~~~-~~~--~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~ 204 (302)
+... ........ .+. .-..|||||+||++||||++.+|++||||| ||+++|+.. ..+.+.+..
T Consensus 418 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~ililDE---~ts~LD~~~~~~i~~~l~~ 494 (547)
T PRK10522 418 KPANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDE---WAADQDPHFRREFYQVLLP 494 (547)
T ss_pred CchHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEEC---CCCCCCHHHHHHHHHHHHH
Confidence 0000 00000000 011 124799999999999999999999999999 999999887 555555543
Q ss_pred -cCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 205 -RADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 205 -~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
.++.+.|++++||+.+.+ ..||++++|+ .|+.
T Consensus 495 ~~~~~~~tvi~itH~~~~~-~~~d~i~~l~-~G~i 527 (547)
T PRK10522 495 LLQEMGKTIFAISHDDHYF-IHADRLLEMR-NGQL 527 (547)
T ss_pred HHHhCCCEEEEEEechHHH-HhCCEEEEEE-CCEE
Confidence 233478999999999765 5899999998 6764
No 346
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.92 E-value=8.7e-26 Score=215.77 Aligned_cols=167 Identities=18% Similarity=0.198 Sum_probs=121.9
Q ss_pred CCChhHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeec--------CchhhhHHHHHHH-----
Q psy2071 60 TLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACT--------QPRRVAAMSVAQR----- 126 (302)
Q Consensus 60 ~lp~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~--------~~~~~~~~~~~~~----- 126 (302)
.++...+.+++++.+.+|+.+||||+|||||||||++|+|...|++|.|..... .+.......+...
T Consensus 12 ~~g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~~~v~~l~Q~~~~~~~~tv~~~v~~~~ 91 (530)
T COG0488 12 AYGDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYLSQEPPLDPEKTVLDYVIEGF 91 (530)
T ss_pred eeCCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCCceEEEeCCCCCcCCCccHHHHHHhhh
Confidence 345555688999999999999999999999999999999999999998876542 1100000000000
Q ss_pred ------------hhhhh-------------------ccccc---cceeeeeeecCCCCccccccccCHHHHHHHhccccC
Q psy2071 127 ------------VSEEM-------------------DCQLG---QEVGYSIRFEDCSSPKTVLKYMTDGMLLREGMSDPM 172 (302)
Q Consensus 127 ------------~~~~~-------------------~~~~~---~~v~~~~~~~~~~~~~~~~~~lS~G~~qr~~la~al 172 (302)
....+ ..+.. ..+...+.+ ...++.+..||||++.|++||++|
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~---~~~~~~~~~LSGG~r~Rv~LA~aL 168 (530)
T COG0488 92 GELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGF---PDEDRPVSSLSGGWRRRVALARAL 168 (530)
T ss_pred HHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCC---CcccCchhhcCHHHHHHHHHHHHH
Confidence 00000 00000 001111111 112678899999999999999999
Q ss_pred CCCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecC
Q psy2071 173 LENYQVILLDEAHERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPG 236 (302)
Q Consensus 173 ~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g 236 (302)
+.+|++||||| ||++||... ..|.+.+..++ | |+|+||||-.++...|++|+-++ .|
T Consensus 169 ~~~pDlLLLDE---PTNHLD~~~i~WLe~~L~~~~--g-tviiVSHDR~FLd~V~t~I~~ld-~g 226 (530)
T COG0488 169 LEEPDLLLLDE---PTNHLDLESIEWLEDYLKRYP--G-TVIVVSHDRYFLDNVATHILELD-RG 226 (530)
T ss_pred hcCCCEEEEcC---CCcccCHHHHHHHHHHHHhCC--C-cEEEEeCCHHHHHHHhhheEEec-CC
Confidence 99999999999 999999776 88999987654 4 89999999999999999999998 55
No 347
>PLN03232 ABC transporter C family member; Provisional
Probab=99.92 E-value=1e-25 Score=239.75 Aligned_cols=168 Identities=11% Similarity=0.178 Sum_probs=131.5
Q ss_pred HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhh---h---hhccccccc
Q psy2071 65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVS---E---EMDCQLGQE 138 (302)
Q Consensus 65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~---~---~~~~~~~~~ 138 (302)
.+++++++.|++||.+||+|+||||||||+++|.|++.|++|+|.++|.+...+.......+++ + .+..++++|
T Consensus 1250 ~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~N 1329 (1495)
T PLN03232 1250 PVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFN 1329 (1495)
T ss_pred cccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHH
Confidence 3689999999999999999999999999999999999999999999998876655444443332 2 234466666
Q ss_pred eeeeeeecC------------------C-CCccccc----cccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH
Q psy2071 139 VGYSIRFED------------------C-SSPKTVL----KYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM 195 (302)
Q Consensus 139 v~~~~~~~~------------------~-~~~~~~~----~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~ 195 (302)
+.+.-...+ . ...++.+ .+||||||||++|||||+.+|++||||| +|+++|...
T Consensus 1330 L~~~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ILILDE---ATSaLD~~T 1406 (1495)
T PLN03232 1330 IDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDE---ATASVDVRT 1406 (1495)
T ss_pred cCCCCCCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEC---CcccCCHHH
Confidence 654311100 0 0112222 3599999999999999999999999999 999999888
Q ss_pred -HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 196 -GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 196 -~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
..+.+.++...+ +.|+|+++|.++.+.. ||+|++|+ .|+.
T Consensus 1407 e~~Iq~~L~~~~~-~~TvI~IAHRl~ti~~-~DrIlVL~-~G~i 1447 (1495)
T PLN03232 1407 DSLIQRTIREEFK-SCTMLVIAHRLNTIID-CDKILVLS-SGQV 1447 (1495)
T ss_pred HHHHHHHHHHHcC-CCEEEEEeCCHHHHHh-CCEEEEEE-CCEE
Confidence 778888876533 6899999999999876 89999998 6653
No 348
>PLN03130 ABC transporter C family member; Provisional
Probab=99.92 E-value=1.3e-25 Score=239.60 Aligned_cols=166 Identities=13% Similarity=0.189 Sum_probs=131.4
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhh---h---hhccccccce
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVS---E---EMDCQLGQEV 139 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~---~---~~~~~~~~~v 139 (302)
+++++++.|++||.+||+|+||||||||+++|.+++.|++|+|.++|.+.+.+....+..+++ + .+..++++|+
T Consensus 1254 VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreNL 1333 (1622)
T PLN03130 1254 VLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNL 1333 (1622)
T ss_pred eecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccEEECCCCccccccHHHHh
Confidence 689999999999999999999999999999999999999999999998876655444444332 2 2344666666
Q ss_pred eeeeeecC------------------C-CCccccc----cccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-
Q psy2071 140 GYSIRFED------------------C-SSPKTVL----KYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM- 195 (302)
Q Consensus 140 ~~~~~~~~------------------~-~~~~~~~----~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~- 195 (302)
.+.-.... . ...++.+ .+||+|||||++|||||+.+|++||||| +|+++|...
T Consensus 1334 d~~~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~ILILDE---ATSaLD~~Te 1410 (1622)
T PLN03130 1334 DPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDE---ATAAVDVRTD 1410 (1622)
T ss_pred CcCCCCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEEC---CCCCCCHHHH
Confidence 54311100 0 0112222 3599999999999999999999999999 999999888
Q ss_pred HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCc
Q psy2071 196 GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGR 237 (302)
Q Consensus 196 ~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~ 237 (302)
..+.+.+++..+ +.|+|+++|.++.+.. ||+|++|+ .|+
T Consensus 1411 ~~Iq~~I~~~~~-~~TvI~IAHRL~tI~~-~DrIlVLd-~G~ 1449 (1622)
T PLN03130 1411 ALIQKTIREEFK-SCTMLIIAHRLNTIID-CDRILVLD-AGR 1449 (1622)
T ss_pred HHHHHHHHHHCC-CCEEEEEeCChHHHHh-CCEEEEEE-CCE
Confidence 778888876543 6899999999999876 89999998 555
No 349
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.92 E-value=2.4e-26 Score=227.39 Aligned_cols=168 Identities=17% Similarity=0.115 Sum_probs=126.4
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHH-------HHHhhh----hhccc
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSV-------AQRVSE----EMDCQ 134 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~-------~~~~~~----~~~~~ 134 (302)
.++++++.+++||+++|+|+||||||||+++|+|+++|++|++.++|.+......... ...+++ ....+
T Consensus 23 il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~t 102 (648)
T PRK10535 23 VLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSHLT 102 (648)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHHHhccEEEEeCCcccCCCCC
Confidence 5788999999999999999999999999999999999999999999876433221110 011111 11223
Q ss_pred cccceeeeee-------------------ecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH
Q psy2071 135 LGQEVGYSIR-------------------FEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM 195 (302)
Q Consensus 135 ~~~~v~~~~~-------------------~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~ 195 (302)
+.+++.+... +......++....||+||+||++||++|+.+|++||||| |+.++|+..
T Consensus 103 v~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAraL~~~P~lLllDE---P~~gLD~~s 179 (648)
T PRK10535 103 AAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADE---PTGALDSHS 179 (648)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEC---CCCCCCHHH
Confidence 3333322110 000112245567799999999999999999999999999 999999887
Q ss_pred -HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 196 -GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 196 -~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
..+.++++...+.+.|++++||+.+.+. .||++++|+ .|+.
T Consensus 180 ~~~l~~ll~~l~~~g~tilivsH~~~~~~-~~d~i~~l~-~G~i 221 (648)
T PRK10535 180 GEEVMAILHQLRDRGHTVIIVTHDPQVAA-QAERVIEIR-DGEI 221 (648)
T ss_pred HHHHHHHHHHHHhcCCEEEEECCCHHHHH-hCCEEEEEE-CCEE
Confidence 7888888876556889999999999875 699999998 6654
No 350
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.91 E-value=5.1e-26 Score=224.05 Aligned_cols=169 Identities=17% Similarity=0.220 Sum_probs=127.5
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhccccc---CCCEEEeecCchhhhHHHHHHHhhh----hhccccccc
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKS---VGAKAVACTQPRRVAAMSVAQRVSE----EMDCQLGQE 138 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~---~G~~~i~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 138 (302)
++++++..+++||+++|+||||||||||+++|+|...+. +|++.++|.............++.+ ....++.++
T Consensus 40 iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lTV~e~ 119 (617)
T TIGR00955 40 LLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTVREH 119 (617)
T ss_pred cccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCcHHHH
Confidence 689999999999999999999999999999999998775 6899999876432111111111221 223455665
Q ss_pred eeeeeeecC----------------------CCCcccccc------ccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcc
Q psy2071 139 VGYSIRFED----------------------CSSPKTVLK------YMTDGMLLREGMSDPMLENYQVILLDEAHERTLA 190 (302)
Q Consensus 139 v~~~~~~~~----------------------~~~~~~~~~------~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~ 190 (302)
+.+...+.. ....++.+. .||||||||++||++|+.+|++++||| |+++
T Consensus 120 l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDE---Ptsg 196 (617)
T TIGR00955 120 LMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDE---PTSG 196 (617)
T ss_pred HHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeC---CCcc
Confidence 544322110 011234443 599999999999999999999999999 9999
Q ss_pred hHHHH-HHHHHHHHHcCCCcEEEEEEecCHH-HHHhhccCCCeeeecCcC
Q psy2071 191 TDILM-GVLKEVIKQRADLKLVIMSATLDAG-KFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 191 lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~-~~~~~~d~~~~l~i~g~~ 238 (302)
+|... ..+.+.+++..+.|.|+|+++|+.. ++.++||++++|+ .|+.
T Consensus 197 LD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~-~G~~ 245 (617)
T TIGR00955 197 LDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMA-EGRV 245 (617)
T ss_pred hhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEee-CCeE
Confidence 99877 6777777776666899999999984 7889999999998 6653
No 351
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=1.5e-25 Score=182.60 Aligned_cols=151 Identities=15% Similarity=0.156 Sum_probs=116.0
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhH------HHHHHHhhhhhccccccce
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAA------MSVAQRVSEEMDCQLGQEV 139 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~------~~~~~~~~~~~~~~~~~~v 139 (302)
...++++++.+||++.|.|||||||||||++++|+..|++|+|.+.+........ .++..+...-...++.+|+
T Consensus 17 lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~~~~~~l~yLGH~~giK~eLTa~ENL 96 (209)
T COG4133 17 LFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQALLYLGHQPGIKTELTALENL 96 (209)
T ss_pred eecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchhhHHHHHHHhhccccccchhhHHHHH
Confidence 4678899999999999999999999999999999999999999998765433221 1111111222234555665
Q ss_pred eeeeeecCC----------------CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHH
Q psy2071 140 GYSIRFEDC----------------SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVI 202 (302)
Q Consensus 140 ~~~~~~~~~----------------~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll 202 (302)
.|.-++... ...+.+..+||.||++|++|||-+++..++.|||| |+.++|... ..+..++
T Consensus 97 ~F~~~~~~~~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pLWiLDE---P~taLDk~g~a~l~~l~ 173 (209)
T COG4133 97 HFWQRFHGSGNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDE---PFTALDKEGVALLTALM 173 (209)
T ss_pred HHHHHHhCCCchhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCCCceeecC---cccccCHHHHHHHHHHH
Confidence 554443332 13456778899999999999999999999999999 999999877 7888888
Q ss_pred HHcCCCcEEEEEEecCH
Q psy2071 203 KQRADLKLVIMSATLDA 219 (302)
Q Consensus 203 ~~~~~~~~~ii~~thd~ 219 (302)
......|-+|+.+||..
T Consensus 174 ~~H~~~GGiVllttHq~ 190 (209)
T COG4133 174 AAHAAQGGIVLLTTHQP 190 (209)
T ss_pred HHHhcCCCEEEEecCCc
Confidence 87666677777789964
No 352
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.91 E-value=1e-25 Score=223.20 Aligned_cols=157 Identities=13% Similarity=0.172 Sum_probs=112.9
Q ss_pred HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhhccccccceeeee-
Q psy2071 65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSI- 143 (302)
Q Consensus 65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~- 143 (302)
.+++++++.|++|++++|+||||||||||+++|+|+++|+.|.+.+.+.. .++...+... .+..++.+++.+..
T Consensus 466 ~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~~~--~i~~v~Q~~~---l~~~tv~eni~~~~~ 540 (659)
T TIGR00954 466 VLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPAKG--KLFYVPQRPY---MTLGTLRDQIIYPDS 540 (659)
T ss_pred eeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecCCC--cEEEECCCCC---CCCcCHHHHHhcCCC
Confidence 46899999999999999999999999999999999999999987764311 1111100000 00012222222110
Q ss_pred ---------------------eecCC-------CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH
Q psy2071 144 ---------------------RFEDC-------SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM 195 (302)
Q Consensus 144 ---------------------~~~~~-------~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~ 195 (302)
..... .........|||||+||++||||++.+|+++|||| ||+++|+..
T Consensus 541 ~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~illLDE---pts~LD~~~ 617 (659)
T TIGR00954 541 SEDMKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDE---CTSAVSVDV 617 (659)
T ss_pred hhhhhccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHHcCCCEEEEeC---CccCCCHHH
Confidence 00000 00011235799999999999999999999999999 999999887
Q ss_pred -HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeee
Q psy2071 196 -GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMN 233 (302)
Q Consensus 196 -~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~ 233 (302)
..+.++++.. +.|++++||+.+.+ .+||++++|+
T Consensus 618 ~~~l~~~l~~~---~~tvI~isH~~~~~-~~~d~il~l~ 652 (659)
T TIGR00954 618 EGYMYRLCREF---GITLFSVSHRKSLW-KYHEYLLYMD 652 (659)
T ss_pred HHHHHHHHHHc---CCEEEEEeCchHHH-HhCCEEEEEe
Confidence 6777777653 78999999999986 6899999987
No 353
>PLN03073 ABC transporter F family; Provisional
Probab=99.91 E-value=3.2e-25 Score=220.27 Aligned_cols=176 Identities=14% Similarity=0.108 Sum_probs=121.9
Q ss_pred HhhcCCChhHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcc---cccCCCEEEeecCc-----hhhhH-------
Q psy2071 56 RKRITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEY---SKSVGAKAVACTQP-----RRVAA------- 120 (302)
Q Consensus 56 ~~r~~lp~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~---~~~~G~~~i~~~~~-----~~~~~------- 120 (302)
+..+.++...+++++++.|.+|++++|+|+||||||||+++|+|.. .|..|.+.+..+.. .....
T Consensus 182 nls~~y~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~~~v~~~~~~ 261 (718)
T PLN03073 182 NFSISVGGRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTALQCVLNTDIE 261 (718)
T ss_pred eEEEEeCCCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHHHHHHHhhHH
Confidence 3444454445789999999999999999999999999999999864 56778887554321 10000
Q ss_pred -HHH----HHHhhhhhc---cccccc-----------------ee-----------ee--------eeecCC--CCcccc
Q psy2071 121 -MSV----AQRVSEEMD---CQLGQE-----------------VG-----------YS--------IRFEDC--SSPKTV 154 (302)
Q Consensus 121 -~~~----~~~~~~~~~---~~~~~~-----------------v~-----------~~--------~~~~~~--~~~~~~ 154 (302)
... ...+.+... .....+ +. |. +..... ...++.
T Consensus 262 ~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~lgl~~~~~~~~ 341 (718)
T PLN03073 262 RTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGLSFTPEMQVKA 341 (718)
T ss_pred HHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHCCCChHHHhCc
Confidence 000 001111100 000000 00 00 000000 112456
Q ss_pred ccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeee
Q psy2071 155 LKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMN 233 (302)
Q Consensus 155 ~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~ 233 (302)
+..|||||+||++||++|+.+|++||||| ||+++|+.. ..+.++++.. +.|+|++|||.+++..+||++++|+
T Consensus 342 ~~~LSgG~k~rv~LA~aL~~~p~lLlLDE---Pt~~LD~~~~~~l~~~L~~~---~~tviivsHd~~~l~~~~d~i~~l~ 415 (718)
T PLN03073 342 TKTFSGGWRMRIALARALFIEPDLLLLDE---PTNHLDLHAVLWLETYLLKW---PKTFIVVSHAREFLNTVVTDILHLH 415 (718)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEEC---CCCCCCHHHHHHHHHHHHHc---CCEEEEEECCHHHHHHhCCEEEEEE
Confidence 78899999999999999999999999999 999999887 7788888765 5799999999999999999999998
Q ss_pred ecCcC
Q psy2071 234 VPGRT 238 (302)
Q Consensus 234 i~g~~ 238 (302)
.|+.
T Consensus 416 -~g~i 419 (718)
T PLN03073 416 -GQKL 419 (718)
T ss_pred -CCEE
Confidence 6653
No 354
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.91 E-value=6.9e-25 Score=190.38 Aligned_cols=79 Identities=15% Similarity=0.139 Sum_probs=69.5
Q ss_pred ccccccccCHHHHHHHhccccCCCCC--cEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhcc
Q psy2071 151 PKTVLKYMTDGMLLREGMSDPMLENY--QVILLDEAHERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFD 227 (302)
Q Consensus 151 ~~~~~~~lS~G~~qr~~la~al~~~p--~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d 227 (302)
.+..+..||+||+||+++|++|+.+| ++||||| |+.++|+.. ..+.+++....+.+.|++++|||++++ .+||
T Consensus 131 ~~~~~~~LSgG~~qrv~laral~~~p~~~llllDE---Pt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~~~-~~~d 206 (226)
T cd03270 131 LSRSAPTLSGGEAQRIRLATQIGSGLTGVLYVLDE---PSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDEDTI-RAAD 206 (226)
T ss_pred ccCccCcCCHHHHHHHHHHHHHHhCCCCCEEEEeC---CccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHHHH-HhCC
Confidence 45667889999999999999999998 5999999 999999887 777788776655688999999999987 5999
Q ss_pred CCCeee
Q psy2071 228 NAPLMN 233 (302)
Q Consensus 228 ~~~~l~ 233 (302)
++++|.
T Consensus 207 ~i~~l~ 212 (226)
T cd03270 207 HVIDIG 212 (226)
T ss_pred EEEEeC
Confidence 999994
No 355
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.91 E-value=1.8e-25 Score=189.89 Aligned_cols=165 Identities=15% Similarity=0.104 Sum_probs=109.9
Q ss_pred HHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCC---------CEEEeecCchhhhHHHHHHHhhhhhcccc---
Q psy2071 68 TEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVG---------AKAVACTQPRRVAAMSVAQRVSEEMDCQL--- 135 (302)
Q Consensus 68 ~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G---------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~--- 135 (302)
+++++.+.+| +++|+||||||||||+++|+|+..+..| .+.+.+.+............+.+......
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~~~~~ 92 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGRYSII 92 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCceeEE
Confidence 5567788999 9999999999999999999999866533 23333332211000000001111111000
Q ss_pred -ccceeeeeeecCCCCccccccccCHHHHHHHhccccCC----CCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCc
Q psy2071 136 -GQEVGYSIRFEDCSSPKTVLKYMTDGMLLREGMSDPML----ENYQVILLDEAHERTLATDILM-GVLKEVIKQRADLK 209 (302)
Q Consensus 136 -~~~v~~~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~----~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~ 209 (302)
.+.+...+.. ....++.+..||+||+||+++|++++ .+|+++|||| |++++|+.. ..+.+++++..+ +
T Consensus 93 ~~~~~~~~l~~--~~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDE---P~~~LD~~~~~~l~~~l~~~~~-~ 166 (197)
T cd03278 93 SQGDVSEIIEA--PGKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDE---VDAALDDANVERFARLLKEFSK-E 166 (197)
T ss_pred ehhhHHHHHhC--CCccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeC---CcccCCHHHHHHHHHHHHHhcc-C
Confidence 0000000011 12234567789999999999999986 5679999999 999999887 778888887655 5
Q ss_pred EEEEEEecCHHHHHhhccCCCeeeecCcCCc
Q psy2071 210 LVIMSATLDAGKFQQYFDNAPLMNVPGRTHP 240 (302)
Q Consensus 210 ~~ii~~thd~~~~~~~~d~~~~l~i~g~~~~ 240 (302)
.+||++||+++.+ ++||+++.++-.+.+++
T Consensus 167 ~tiIiitH~~~~~-~~~d~v~~~~~~~~~~~ 196 (197)
T cd03278 167 TQFIVITHRKGTM-EAADRLYGVTMQESGVS 196 (197)
T ss_pred CEEEEEECCHHHH-hhcceEEEEEeccCCCC
Confidence 7899999999976 68999999985555543
No 356
>PTZ00243 ABC transporter; Provisional
Probab=99.91 E-value=4.1e-25 Score=235.34 Aligned_cols=167 Identities=16% Similarity=0.171 Sum_probs=129.9
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhh---h---hhccccccce
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVS---E---EMDCQLGQEV 139 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~---~---~~~~~~~~~v 139 (302)
+++++++.|++||.++|+|+||||||||+++|.|++.|++|.|.++|.+...+......+.++ + .+..++++|+
T Consensus 1325 vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIreNI 1404 (1560)
T PTZ00243 1325 VLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNV 1404 (1560)
T ss_pred eeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccHHHHh
Confidence 689999999999999999999999999999999999999999999999876655444443332 2 2344666666
Q ss_pred eeeeeecC-------------------CCCccccc----cccCHHHHHHHhccccCCCC-CcEEEEcCCCCCCcchHHHH
Q psy2071 140 GYSIRFED-------------------CSSPKTVL----KYMTDGMLLREGMSDPMLEN-YQVILLDEAHERTLATDILM 195 (302)
Q Consensus 140 ~~~~~~~~-------------------~~~~~~~~----~~lS~G~~qr~~la~al~~~-p~lliLDE~~~p~~~lD~~~ 195 (302)
...-.... ....++.+ .+||||||||++|||||+.+ |++||||| +|+++|...
T Consensus 1405 dp~~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDE---ATSaLD~~t 1481 (1560)
T PTZ00243 1405 DPFLEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDE---ATANIDPAL 1481 (1560)
T ss_pred CcccCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeC---CCccCCHHH
Confidence 43211000 00112333 45999999999999999996 89999999 999999888
Q ss_pred -HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 196 -GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 196 -~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
..+.+.+....+ +.|+|+++|.++.+. .||+|++|+ .|+.
T Consensus 1482 e~~Iq~~L~~~~~-~~TvI~IAHRl~ti~-~~DrIlVLd-~G~V 1522 (1560)
T PTZ00243 1482 DRQIQATVMSAFS-AYTVITIAHRLHTVA-QYDKIIVMD-HGAV 1522 (1560)
T ss_pred HHHHHHHHHHHCC-CCEEEEEeccHHHHH-hCCEEEEEE-CCEE
Confidence 778888876433 589999999998886 589999998 6653
No 357
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.90 E-value=4.1e-25 Score=235.56 Aligned_cols=168 Identities=11% Similarity=0.186 Sum_probs=131.8
Q ss_pred HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhh---h---hhccccccc
Q psy2071 65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVS---E---EMDCQLGQE 138 (302)
Q Consensus 65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~---~---~~~~~~~~~ 138 (302)
.+++++++.|++||.+||+|+||||||||+++|.+++.|++|+|.++|.+.+.+....+..+++ + .+..++++|
T Consensus 1300 ~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~N 1379 (1522)
T TIGR00957 1300 LVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMN 1379 (1522)
T ss_pred ccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcCeEECCCCcccCccHHHH
Confidence 3689999999999999999999999999999999999999999999999877665544444332 1 234466666
Q ss_pred eeeeeeec------------------CC-CCccccc----cccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH
Q psy2071 139 VGYSIRFE------------------DC-SSPKTVL----KYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM 195 (302)
Q Consensus 139 v~~~~~~~------------------~~-~~~~~~~----~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~ 195 (302)
+...-... .. ...++.+ ..||+|||||++|||||+.+|++||||| +|+++|...
T Consensus 1380 Ldp~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILiLDE---aTSalD~~T 1456 (1522)
T TIGR00957 1380 LDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDE---ATAAVDLET 1456 (1522)
T ss_pred cCcccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCCCEEEEEC---CcccCCHHH
Confidence 64210000 00 1123333 4599999999999999999999999999 999999888
Q ss_pred -HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 196 -GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 196 -~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
..+.+.++...+ +.|+|+++|.++.+.. ||+|++|+ .|+.
T Consensus 1457 e~~Iq~~l~~~~~-~~TvI~IAHRl~ti~~-~DrIlVld-~G~I 1497 (1522)
T TIGR00957 1457 DNLIQSTIRTQFE-DCTVLTIAHRLNTIMD-YTRVIVLD-KGEV 1497 (1522)
T ss_pred HHHHHHHHHHHcC-CCEEEEEecCHHHHHh-CCEEEEEE-CCEE
Confidence 778888876433 6899999999998875 79999999 6763
No 358
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.90 E-value=1e-24 Score=174.89 Aligned_cols=168 Identities=21% Similarity=0.240 Sum_probs=122.1
Q ss_pred CCChhHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecC---------chhh------hHHHHH
Q psy2071 60 TLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQ---------PRRV------AAMSVA 124 (302)
Q Consensus 60 ~lp~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~---------~~~~------~~~~~~ 124 (302)
.||+ +.+++++++.|||++|-||+|+||||+++++-+.|.|++|.|.+.-.. |+.+ ...++.
T Consensus 23 ~LpV---~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~pr~vl~vRr~TiGyVS 99 (235)
T COG4778 23 RLPV---LRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPREVLEVRRTTIGYVS 99 (235)
T ss_pred Eeee---eeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccChHHHHHHHHhhhHHHH
Confidence 3566 678999999999999999999999999999999999999999885432 2221 111112
Q ss_pred HHhhhhhccccccceeeee-------------------eecCCCC-ccccccccCHHHHHHHhccccCCCCCcEEEEcCC
Q psy2071 125 QRVSEEMDCQLGQEVGYSI-------------------RFEDCSS-PKTVLKYMTDGMLLREGMSDPMLENYQVILLDEA 184 (302)
Q Consensus 125 ~~~~~~~~~~~~~~v~~~~-------------------~~~~~~~-~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~ 184 (302)
|++...+.....+-+...+ +++.... =.-....+|||++||+.|||.++.++.+|+|||
T Consensus 100 QFLRviPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQRVNIaRgfivd~pILLLDE- 178 (235)
T COG4778 100 QFLRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVNIARGFIVDYPILLLDE- 178 (235)
T ss_pred HHHHhccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchheehhhhhhhhccCceEEecC-
Confidence 2111111111111111111 0000000 011235599999999999999999999999999
Q ss_pred CCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeee
Q psy2071 185 HERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMN 233 (302)
Q Consensus 185 ~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~ 233 (302)
||+++|... +.+.+++...+..|..++-+-||-+.=...|||+.-+.
T Consensus 179 --PTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHDeevre~vadR~~~~~ 226 (235)
T COG4778 179 --PTASLDATNRAVVVELIREAKARGAALVGIFHDEEVREAVADRLLDVS 226 (235)
T ss_pred --CcccccccchHHHHHHHHHHHhcCceEEEeeccHHHHHHHhhheeecc
Confidence 999999887 88899999888889999999999999999999987765
No 359
>KOG0059|consensus
Probab=99.89 E-value=2.4e-24 Score=219.12 Aligned_cols=168 Identities=15% Similarity=0.137 Sum_probs=128.9
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhh-h---HHHH----HHHhhhhhcccccc
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRV-A---AMSV----AQRVSEEMDCQLGQ 137 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~-~---~~~~----~~~~~~~~~~~~~~ 137 (302)
+.+++++.|++||+.|++|+|||||||+++++.|+.+|++|++.+.|...... . +... .|..+.....+.++
T Consensus 580 Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~iGyCPQ~d~l~~~lT~rE 659 (885)
T KOG0059|consen 580 AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQLGYCPQFDALWEELTGRE 659 (885)
T ss_pred hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhhhcccCCchhhhhhhccHHH
Confidence 78899999999999999999999999999999999999999999977654321 0 1100 11111112223333
Q ss_pred ceeeeeeec-------------------CCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HH
Q psy2071 138 EVGYSIRFE-------------------DCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GV 197 (302)
Q Consensus 138 ~v~~~~~~~-------------------~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~ 197 (302)
.+.+..+.. .....++.+..+|||+|+|+++|.|++.+|++++||| |+.|+||.. +.
T Consensus 660 hL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi~LDE---PstGmDP~arr~ 736 (885)
T KOG0059|consen 660 HLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVILLDE---PSTGLDPKARRH 736 (885)
T ss_pred HHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCEEEecC---CCCCCCHHHHHH
Confidence 222222111 1123456678899999999999999999999999999 999999988 88
Q ss_pred HHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCc
Q psy2071 198 LKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGR 237 (302)
Q Consensus 198 l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~ 237 (302)
+++++....+.|..+|.+||.|++++.+|||+++|. .|+
T Consensus 737 lW~ii~~~~k~g~aiiLTSHsMeE~EaLCtR~aImv-~G~ 775 (885)
T KOG0059|consen 737 LWDIIARLRKNGKAIILTSHSMEEAEALCTRTAIMV-IGQ 775 (885)
T ss_pred HHHHHHHHHhcCCEEEEEcCCHHHHHHHhhhhheee-cCe
Confidence 999998776666588889999999999999999987 544
No 360
>PLN03140 ABC transporter G family member; Provisional
Probab=99.89 E-value=7e-25 Score=231.28 Aligned_cols=170 Identities=14% Similarity=0.175 Sum_probs=125.7
Q ss_pred HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccc--cCCCEEEeecCchhhhHHHHHHHhh----hhhccccccc
Q psy2071 65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSK--SVGAKAVACTQPRRVAAMSVAQRVS----EEMDCQLGQE 138 (302)
Q Consensus 65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~--~~G~~~i~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 138 (302)
.++++++..+++|++++|+||||||||||+++|+|...+ .+|++.++|.+...........++. .....++.++
T Consensus 894 ~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~lTV~E~ 973 (1470)
T PLN03140 894 QLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVRES 973 (1470)
T ss_pred eEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccCChHHhhhheEEEccccccCCCCcHHHH
Confidence 468899999999999999999999999999999998763 5799999886543211111111111 1223455555
Q ss_pred eeeeeeec----------------------CCCCccccc-----cccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcch
Q psy2071 139 VGYSIRFE----------------------DCSSPKTVL-----KYMTDGMLLREGMSDPMLENYQVILLDEAHERTLAT 191 (302)
Q Consensus 139 v~~~~~~~----------------------~~~~~~~~~-----~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~l 191 (302)
+.+..... .....++.+ ..||||||||++||++|+.+|++||||| ||+++
T Consensus 974 L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDE---PTsgL 1050 (1470)
T PLN03140 974 LIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDE---PTSGL 1050 (1470)
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeC---CCCCC
Confidence 54321110 000123333 5799999999999999999999999999 99999
Q ss_pred HHHH-HHHHHHHHHcCCCcEEEEEEecCHH-HHHhhccCCCeeeecCc
Q psy2071 192 DILM-GVLKEVIKQRADLKLVIMSATLDAG-KFQQYFDNAPLMNVPGR 237 (302)
Q Consensus 192 D~~~-~~l~~ll~~~~~~~~~ii~~thd~~-~~~~~~d~~~~l~i~g~ 237 (302)
|... ..+.+++++..+.|.|||++||+.+ .+.++||++++|+-.|+
T Consensus 1051 D~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~ 1098 (1470)
T PLN03140 1051 DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQ 1098 (1470)
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCE
Confidence 9877 7788888877667889999999998 57789999999972244
No 361
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.89 E-value=4.8e-25 Score=232.83 Aligned_cols=167 Identities=16% Similarity=0.152 Sum_probs=125.8
Q ss_pred HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhccc---ccCCCEEEeecCchhhhHHHHHHHhhh----hhcccccc
Q psy2071 65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYS---KSVGAKAVACTQPRRVAAMSVAQRVSE----EMDCQLGQ 137 (302)
Q Consensus 65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~---~~~G~~~i~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 137 (302)
.++++++..+++|++++|+||||||||||+++|+|..+ +++|++.++|.+... ........+.+ ....++.+
T Consensus 777 ~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~-~~~~~i~yv~Q~~~~~~~~Tv~E 855 (1394)
T TIGR00956 777 VILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDS-SFQRSIGYVQQQDLHLPTSTVRE 855 (1394)
T ss_pred EeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCh-hhhcceeeecccccCCCCCCHHH
Confidence 36899999999999999999999999999999999987 688999999876421 11111111111 22345555
Q ss_pred ceeeeeeec----------------------CCCCcccccc----ccCHHHHHHHhccccCCCCCc-EEEEcCCCCCCcc
Q psy2071 138 EVGYSIRFE----------------------DCSSPKTVLK----YMTDGMLLREGMSDPMLENYQ-VILLDEAHERTLA 190 (302)
Q Consensus 138 ~v~~~~~~~----------------------~~~~~~~~~~----~lS~G~~qr~~la~al~~~p~-lliLDE~~~p~~~ 190 (302)
++.+..... .....++.+. .||||||||++||++|+.+|+ +||||| ||++
T Consensus 856 ~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~aL~~~P~~iLlLDE---PTsg 932 (1394)
T TIGR00956 856 SLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDE---PTSG 932 (1394)
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHHHHHcCCCeEEEEcC---CCCC
Confidence 554322110 0011234444 699999999999999999997 999999 9999
Q ss_pred hHHHH-HHHHHHHHHcCCCcEEEEEEecCHHH-HHhhccCCCeeeecC
Q psy2071 191 TDILM-GVLKEVIKQRADLKLVIMSATLDAGK-FQQYFDNAPLMNVPG 236 (302)
Q Consensus 191 lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~-~~~~~d~~~~l~i~g 236 (302)
+|... ..+.+++++..+.|.|||++||+++. +.+.||++.+|+ .|
T Consensus 933 LD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~-~G 979 (1394)
T TIGR00956 933 LDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQ-KG 979 (1394)
T ss_pred CCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEc-CC
Confidence 99887 77888888776668999999999986 457899999998 55
No 362
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.89 E-value=2.9e-24 Score=228.50 Aligned_cols=166 Identities=14% Similarity=0.171 Sum_probs=128.0
Q ss_pred HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhh------hhhccccccc
Q psy2071 65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVS------EEMDCQLGQE 138 (302)
Q Consensus 65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~------~~~~~~~~~~ 138 (302)
.+++++++.|++||.++|+|+||||||||+++|+|++. .+|+|.++|.+...+....+.++++ ..+..++++|
T Consensus 1233 ~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~N 1311 (1490)
T TIGR01271 1233 AVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKN 1311 (1490)
T ss_pred ceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHH
Confidence 36899999999999999999999999999999999987 7899999998876655444433332 1234456666
Q ss_pred eeeeeeec------------------CC-CCccccc----cccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH
Q psy2071 139 VGYSIRFE------------------DC-SSPKTVL----KYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM 195 (302)
Q Consensus 139 v~~~~~~~------------------~~-~~~~~~~----~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~ 195 (302)
+...-... .. ...++.+ ..||+|||||++|||||+.+|++||||| ||+++|...
T Consensus 1312 Ldp~~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDE---aTS~lD~~T 1388 (1490)
T TIGR01271 1312 LDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDE---PSAHLDPVT 1388 (1490)
T ss_pred hCcccCCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeC---CcccCCHHH
Confidence 53221000 00 0112222 2599999999999999999999999999 999999888
Q ss_pred -HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCc
Q psy2071 196 -GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGR 237 (302)
Q Consensus 196 -~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~ 237 (302)
..+.+.++.... +.|+|++||.++.+.. ||+|++|+ .|+
T Consensus 1389 e~~I~~~L~~~~~-~~TvI~IaHRl~ti~~-~DrIlvL~-~G~ 1428 (1490)
T TIGR01271 1389 LQIIRKTLKQSFS-NCTVILSEHRVEALLE-CQQFLVIE-GSS 1428 (1490)
T ss_pred HHHHHHHHHHHcC-CCEEEEEecCHHHHHh-CCEEEEEE-CCE
Confidence 778888876533 6899999999998875 89999998 565
No 363
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=7.3e-24 Score=177.97 Aligned_cols=168 Identities=15% Similarity=0.109 Sum_probs=118.9
Q ss_pred HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhc--ccccCCCEEEeecCchhhhHHH-------HH-HHhhhhhccc
Q psy2071 65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVE--YSKSVGAKAVACTQPRRVAAMS-------VA-QRVSEEMDCQ 134 (302)
Q Consensus 65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~--~~~~~G~~~i~~~~~~~~~~~~-------~~-~~~~~~~~~~ 134 (302)
.+++++++.|++||+.+|+||||||||||...|+|. |.++.|+|.+.|.+......-. ++ |+.....+.+
T Consensus 18 eILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~GifLafQ~P~ei~GV~ 97 (251)
T COG0396 18 EILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARAGIFLAFQYPVEIPGVT 97 (251)
T ss_pred hhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhcCCEEeecCCccCCCee
Confidence 578999999999999999999999999999999997 4788999999998743222111 11 1111111111
Q ss_pred cccceee------------------------eeeecCCCCcccc-ccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCc
Q psy2071 135 LGQEVGY------------------------SIRFEDCSSPKTV-LKYMTDGMLLREGMSDPMLENYQVILLDEAHERTL 189 (302)
Q Consensus 135 ~~~~v~~------------------------~~~~~~~~~~~~~-~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~ 189 (302)
..+.+.. .+.+.. ...++. -.-+|||+++|..|+..++.+|++.|||| |.+
T Consensus 98 ~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~-~~l~R~vN~GFSGGEkKR~EilQ~~~lePkl~ILDE---~DS 173 (251)
T COG0396 98 NSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDE-EFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDE---PDS 173 (251)
T ss_pred HHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCH-HHhhcccCCCcCcchHHHHHHHHHHhcCCCEEEecC---CCc
Confidence 1111000 000000 011111 12399999999999999999999999999 999
Q ss_pred chHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhc-cCCCeeeecCc
Q psy2071 190 ATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYF-DNAPLMNVPGR 237 (302)
Q Consensus 190 ~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~-d~~~~l~i~g~ 237 (302)
|+|.-. ..+.+.++.+++.+..++++||.-..+..+- |++-+|. .|+
T Consensus 174 GLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vhvl~-~Gr 222 (251)
T COG0396 174 GLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHVLY-DGR 222 (251)
T ss_pred CccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEEEEE-CCE
Confidence 999766 8999999988888999999999876554332 7777776 665
No 364
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.89 E-value=2.2e-24 Score=206.19 Aligned_cols=163 Identities=21% Similarity=0.204 Sum_probs=117.7
Q ss_pred HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCc-----hhh----hHHHHHHHhhhhhcccc
Q psy2071 65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQP-----RRV----AAMSVAQRVSEEMDCQL 135 (302)
Q Consensus 65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~-----~~~----~~~~~~~~~~~~~~~~~ 135 (302)
.+.+++++.|..|+.++|+||||+||||||+.|+|...|.+|.+.+...-. ... ....+...+........
T Consensus 336 ~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~ 415 (530)
T COG0488 336 LLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGD 415 (530)
T ss_pred eeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCcccc
Confidence 457899999999999999999999999999999999999999776533210 000 00011111111110000
Q ss_pred ccce-eeeeeec-CCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEE
Q psy2071 136 GQEV-GYSIRFE-DCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVIKQRADLKLVI 212 (302)
Q Consensus 136 ~~~v-~~~~~~~-~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~i 212 (302)
...+ ++.-+|. ......+++..||||||.|+++|+.++.+|.+||||| ||+.||... ..|.+.+... .-||
T Consensus 416 e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDE---PTNhLDi~s~~aLe~aL~~f---~Gtv 489 (530)
T COG0488 416 EQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDE---PTNHLDIESLEALEEALLDF---EGTV 489 (530)
T ss_pred HHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcC---CCccCCHHHHHHHHHHHHhC---CCeE
Confidence 0011 0111111 1112357788999999999999999999999999999 999999777 8888888776 3488
Q ss_pred EEEecCHHHHHhhccCCCeee
Q psy2071 213 MSATLDAGKFQQYFDNAPLMN 233 (302)
Q Consensus 213 i~~thd~~~~~~~~d~~~~l~ 233 (302)
|+||||..++..+|++++.+.
T Consensus 490 l~VSHDr~Fl~~va~~i~~~~ 510 (530)
T COG0488 490 LLVSHDRYFLDRVATRIWLVE 510 (530)
T ss_pred EEEeCCHHHHHhhcceEEEEc
Confidence 889999999999999998887
No 365
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.89 E-value=2.4e-24 Score=229.13 Aligned_cols=159 Identities=15% Similarity=0.157 Sum_probs=116.3
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhhccccccceeeeeee
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRF 145 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 145 (302)
+++++++.|++|++++|+||||||||||+++|+|+++|++|.+.+.|. +++..+... .+..++.+|+.+...+
T Consensus 441 ~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g~----iayv~Q~~~---l~~~Ti~eNI~~g~~~ 513 (1490)
T TIGR01271 441 VLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSGR----ISFSPQTSW---IMPGTIKDNIIFGLSY 513 (1490)
T ss_pred ceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCE----EEEEeCCCc---cCCccHHHHHHhcccc
Confidence 578999999999999999999999999999999999999999988762 111111100 0112333333322111
Q ss_pred c-----------------------CCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHH-
Q psy2071 146 E-----------------------DCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKE- 200 (302)
Q Consensus 146 ~-----------------------~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~- 200 (302)
. ...........||||||||++||||++.+|+++|||| |++++|... ..+.+
T Consensus 514 ~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDe---p~saLD~~~~~~i~~~ 590 (1490)
T TIGR01271 514 DEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDS---PFTHLDVVTEKEIFES 590 (1490)
T ss_pred chHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeC---CcccCCHHHHHHHHHH
Confidence 0 0001122346799999999999999999999999999 999999877 55554
Q ss_pred HHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCc
Q psy2071 201 VIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGR 237 (302)
Q Consensus 201 ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~ 237 (302)
++.... .+.|+|++||+++.+. .||++++|+ .|+
T Consensus 591 ~l~~~~-~~~tvilvtH~~~~~~-~ad~ii~l~-~g~ 624 (1490)
T TIGR01271 591 CLCKLM-SNKTRILVTSKLEHLK-KADKILLLH-EGV 624 (1490)
T ss_pred HHHHHh-cCCeEEEEeCChHHHH-hCCEEEEEE-CCE
Confidence 454433 3789999999999886 599999997 443
No 366
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.89 E-value=9.6e-25 Score=230.58 Aligned_cols=173 Identities=16% Similarity=0.193 Sum_probs=126.4
Q ss_pred ChhHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcc----cccCCCEEEeecCchhhhH------HHHHHHhhhhh
Q psy2071 62 PVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEY----SKSVGAKAVACTQPRRVAA------MSVAQRVSEEM 131 (302)
Q Consensus 62 p~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~----~~~~G~~~i~~~~~~~~~~------~~~~~~~~~~~ 131 (302)
+...++++++..+++|++++|+||||||||||+++|+|.. .|.+|++.++|.+...... ..+.+......
T Consensus 72 ~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~ 151 (1394)
T TIGR00956 72 KTFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFP 151 (1394)
T ss_pred CcceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCC
Confidence 4455789999999999999999999999999999999986 4689999999875432110 00111111112
Q ss_pred ccccccceeeeeee---------------------------cCCCCccc-----cccccCHHHHHHHhccccCCCCCcEE
Q psy2071 132 DCQLGQEVGYSIRF---------------------------EDCSSPKT-----VLKYMTDGMLLREGMSDPMLENYQVI 179 (302)
Q Consensus 132 ~~~~~~~v~~~~~~---------------------------~~~~~~~~-----~~~~lS~G~~qr~~la~al~~~p~ll 179 (302)
..++.+++.+..+. ......++ .+..||||||||++||++|+.+|+++
T Consensus 152 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vl 231 (1394)
T TIGR00956 152 HLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQ 231 (1394)
T ss_pred CCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEE
Confidence 23444443322110 00001122 24569999999999999999999999
Q ss_pred EEcCCCCCCcchHHHH-HHHHHHHHHcCC-CcEEEEEEecCH-HHHHhhccCCCeeeecCcC
Q psy2071 180 LLDEAHERTLATDILM-GVLKEVIKQRAD-LKLVIMSATLDA-GKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 180 iLDE~~~p~~~lD~~~-~~l~~ll~~~~~-~~~~ii~~thd~-~~~~~~~d~~~~l~i~g~~ 238 (302)
+||| ||+++|... ..+.++++...+ .|.|+++++|+. +.+.++||++++|+ .|+.
T Consensus 232 llDE---PTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~-~G~i 289 (1394)
T TIGR00956 232 CWDN---ATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLY-EGYQ 289 (1394)
T ss_pred EEeC---CCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEe-CCeE
Confidence 9999 999999887 667778877654 488999999996 78999999999998 6653
No 367
>PLN03140 ABC transporter G family member; Provisional
Probab=99.89 E-value=1.8e-24 Score=228.28 Aligned_cols=172 Identities=14% Similarity=0.206 Sum_probs=125.1
Q ss_pred hhHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhccccc---CCCEEEeecCchhhh----HHHHHHHhhhhhcccc
Q psy2071 63 VFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKS---VGAKAVACTQPRRVA----AMSVAQRVSEEMDCQL 135 (302)
Q Consensus 63 ~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~---~G~~~i~~~~~~~~~----~~~~~~~~~~~~~~~~ 135 (302)
...++++++..|++|++++|+|||||||||||++|+|.+.|+ +|++.++|.+..... ...+.+........++
T Consensus 177 ~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV 256 (1470)
T PLN03140 177 KLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTV 256 (1470)
T ss_pred cceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcH
Confidence 355789999999999999999999999999999999999988 899999886532111 0001111011112233
Q ss_pred ccceeeeee-------------------------------------------------------ecCCC---Cccccccc
Q psy2071 136 GQEVGYSIR-------------------------------------------------------FEDCS---SPKTVLKY 157 (302)
Q Consensus 136 ~~~v~~~~~-------------------------------------------------------~~~~~---~~~~~~~~ 157 (302)
.+++.+..+ +..+. -.+..++.
T Consensus 257 ~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rg 336 (1470)
T PLN03140 257 KETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRG 336 (1470)
T ss_pred HHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccC
Confidence 333322110 00000 01234567
Q ss_pred cCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcCC-CcEEEEEEecCH-HHHHhhccCCCeeee
Q psy2071 158 MTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVIKQRAD-LKLVIMSATLDA-GKFQQYFDNAPLMNV 234 (302)
Q Consensus 158 lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~-~~~~ii~~thd~-~~~~~~~d~~~~l~i 234 (302)
+|||||||+.||++|+.+|++++||| ||++||... ..+.+++++..+ .+.|+++++|+. +++.++||++++|+
T Consensus 337 lSGGerkRVsia~aL~~~p~vlllDE---PTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~- 412 (1470)
T PLN03140 337 ISGGQKKRVTTGEMIVGPTKTLFMDE---ISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLS- 412 (1470)
T ss_pred CCcccceeeeehhhhcCCCcEEEEeC---CCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEee-
Confidence 99999999999999999999999999 999999877 667777776643 588999999985 68899999999998
Q ss_pred cCcC
Q psy2071 235 PGRT 238 (302)
Q Consensus 235 ~g~~ 238 (302)
.|+.
T Consensus 413 ~G~i 416 (1470)
T PLN03140 413 EGQI 416 (1470)
T ss_pred CceE
Confidence 6653
No 368
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.88 E-value=3.8e-24 Score=228.18 Aligned_cols=160 Identities=16% Similarity=0.153 Sum_probs=116.2
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhhccccccceeeeeee
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRF 145 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 145 (302)
+++++++.|++|++++|+||||||||||+++|+|+++|++|++.++|. ++...+... .+..++.+|+.+...+
T Consensus 653 ~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~----i~yv~Q~~~---l~~~Ti~eNI~~g~~~ 725 (1522)
T TIGR00957 653 TLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGS----VAYVPQQAW---IQNDSLRENILFGKAL 725 (1522)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECCE----EEEEcCCcc---ccCCcHHHHhhcCCcc
Confidence 588999999999999999999999999999999999999999988652 111111100 1122333333322110
Q ss_pred ------------------cCC-----CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHH
Q psy2071 146 ------------------EDC-----SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEV 201 (302)
Q Consensus 146 ------------------~~~-----~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~l 201 (302)
... .........||||||||++||||++.+|+++|||| |++++|... ..+.+.
T Consensus 726 ~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLDE---p~saLD~~~~~~i~~~ 802 (1522)
T TIGR00957 726 NEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDD---PLSAVDAHVGKHIFEH 802 (1522)
T ss_pred CHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcC---CccccCHHHHHHHHHH
Confidence 000 01123345699999999999999999999999999 999999877 555555
Q ss_pred HHHc--CCCcEEEEEEecCHHHHHhhccCCCeeeecCc
Q psy2071 202 IKQR--ADLKLVIMSATLDAGKFQQYFDNAPLMNVPGR 237 (302)
Q Consensus 202 l~~~--~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~ 237 (302)
+... ...+.|+|++||+.+.+.. ||++++|+ .|+
T Consensus 803 l~~~~~~~~~~tvIlvTH~~~~l~~-~D~ii~l~-~G~ 838 (1522)
T TIGR00957 803 VIGPEGVLKNKTRILVTHGISYLPQ-VDVIIVMS-GGK 838 (1522)
T ss_pred HhhhhhhhcCCEEEEEeCChhhhhh-CCEEEEec-CCe
Confidence 4321 1236899999999998865 99999998 554
No 369
>KOG0056|consensus
Probab=99.88 E-value=9.4e-24 Score=193.36 Aligned_cols=170 Identities=19% Similarity=0.254 Sum_probs=132.3
Q ss_pred ChhHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhhccc--cccce
Q psy2071 62 PVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQ--LGQEV 139 (302)
Q Consensus 62 p~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v 139 (302)
|...+++||++.+.+|+.++|+||+|+||||+++++..++..++|.|.|+|++.+.+...++...+...+..+ ..+.+
T Consensus 549 p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNdTI 628 (790)
T KOG0056|consen 549 PGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFNDTI 628 (790)
T ss_pred CCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhcCcccCcceeeccee
Confidence 4555689999999999999999999999999999999999999999999999998877766666655444333 33556
Q ss_pred eeeeeecCCCCc------------------------cccc----cccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcch
Q psy2071 140 GYSIRFEDCSSP------------------------KTVL----KYMTDGMLLREGMSDPMLENYQVILLDEAHERTLAT 191 (302)
Q Consensus 140 ~~~~~~~~~~~~------------------------~~~~----~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~l 191 (302)
.|.+++...... ++++ -.||||+||||++||+++..|.+|+||| .|+++
T Consensus 629 ~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P~iIlLDE---ATSAL 705 (790)
T KOG0056|consen 629 LYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPSIILLDE---ATSAL 705 (790)
T ss_pred eeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCCcEEEEcc---hhhhc
Confidence 666655433211 1111 2299999999999999999999999999 89999
Q ss_pred HHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCc
Q psy2071 192 DILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGR 237 (302)
Q Consensus 192 D~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~ 237 (302)
|... +.+...+.+......+|+ +.|.+..+- .+|.|.+++ .|+
T Consensus 706 DT~tER~IQaaL~rlca~RTtIV-vAHRLSTiv-nAD~ILvi~-~G~ 749 (790)
T KOG0056|consen 706 DTNTERAIQAALARLCANRTTIV-VAHRLSTIV-NADLILVIS-NGR 749 (790)
T ss_pred CCccHHHHHHHHHHHhcCCceEE-Eeeeehhee-cccEEEEEe-CCe
Confidence 9666 778887777766555555 578887765 578888888 554
No 370
>PLN03130 ABC transporter C family member; Provisional
Probab=99.88 E-value=8.4e-24 Score=225.74 Aligned_cols=159 Identities=19% Similarity=0.192 Sum_probs=115.6
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccC-CCEEEeecCchhhhHHHHHHHhhhhhccccccceeeeee
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSV-GAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIR 144 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~-G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 144 (302)
.++++++.|++|+.++|+||+|||||||++.|+|+++|.+ |.+.+.+. ++...+. ...++.++.+|+.+.-.
T Consensus 632 vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l~~~----Iayv~Q~---p~LfngTIreNI~fg~~ 704 (1622)
T PLN03130 632 TLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRGT----VAYVPQV---SWIFNATVRDNILFGSP 704 (1622)
T ss_pred eeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEEcCe----EEEEcCc---cccCCCCHHHHHhCCCc
Confidence 5889999999999999999999999999999999999999 88876431 1111111 11123344455444321
Q ss_pred ec------------------CC-CCccccc----cccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-H-HHH
Q psy2071 145 FE------------------DC-SSPKTVL----KYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-G-VLK 199 (302)
Q Consensus 145 ~~------------------~~-~~~~~~~----~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~-~l~ 199 (302)
++ .. ...+|.+ ..||||||||++||||+..+|+++|||| |++++|... . ++.
T Consensus 705 ~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~IlLLDE---ptSALD~~~~~~I~~ 781 (1622)
T PLN03130 705 FDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDD---PLSALDAHVGRQVFD 781 (1622)
T ss_pred ccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEEEECC---CccccCHHHHHHHHH
Confidence 11 00 0112333 3599999999999999999999999999 999999776 3 445
Q ss_pred HHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCc
Q psy2071 200 EVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGR 237 (302)
Q Consensus 200 ~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~ 237 (302)
+++.... .+.|+|++||+++.+ ..||+|++|+ .|+
T Consensus 782 ~~l~~~l-~~kTvIlVTH~l~~l-~~aD~Ii~L~-~G~ 816 (1622)
T PLN03130 782 KCIKDEL-RGKTRVLVTNQLHFL-SQVDRIILVH-EGM 816 (1622)
T ss_pred HHhhHHh-cCCEEEEEECCHhHH-HhCCEEEEEe-CCE
Confidence 6655332 367999999999765 5799999998 554
No 371
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.88 E-value=3.3e-24 Score=168.72 Aligned_cols=161 Identities=15% Similarity=0.131 Sum_probs=119.8
Q ss_pred CCChhHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhccccc---CCCEEEeecCchhhhH-HHH----HHHhhhhh
Q psy2071 60 TLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKS---VGAKAVACTQPRRVAA-MSV----AQRVSEEM 131 (302)
Q Consensus 60 ~lp~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~---~G~~~i~~~~~~~~~~-~~~----~~~~~~~~ 131 (302)
.+|..-.+-+|+++|.+|||+.|.||+|||||||+.-+.|.+.+. +|++.+++++.....+ ... .+..-.++
T Consensus 11 ~l~g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~GiLFQD~lLFp 90 (213)
T COG4136 11 RLPGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIGILFQDALLFP 90 (213)
T ss_pred cCCCceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhheeeeeccccccc
Confidence 456555667899999999999999999999999999999988765 4888888876433221 111 11112234
Q ss_pred ccccccceeeeeeecCCC------------------CccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHH
Q psy2071 132 DCQLGQEVGYSIRFEDCS------------------SPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDI 193 (302)
Q Consensus 132 ~~~~~~~v~~~~~~~~~~------------------~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~ 193 (302)
..++++|+.+.+.-.... ...+-...+||||+-|+++-|+|+..|+.++||| |++.+|.
T Consensus 91 hlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla~Pk~lLLDE---PFS~LD~ 167 (213)
T COG4136 91 HLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLDE---PFSRLDV 167 (213)
T ss_pred ccccccceEEecCcccccHHHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHHHHHHHhCcceeeeCC---chhHHHH
Confidence 567888887776322111 1122345699999999999999999999999999 9999998
Q ss_pred HH-HHHHHHHH-HcCCCcEEEEEEecCHHHHH
Q psy2071 194 LM-GVLKEVIK-QRADLKLVIMSATLDAGKFQ 223 (302)
Q Consensus 194 ~~-~~l~~ll~-~~~~~~~~ii~~thd~~~~~ 223 (302)
.+ ...++..- +....|+-.+.+|||.+.+.
T Consensus 168 ALR~qfR~wVFs~~r~agiPtv~VTHD~~Dvp 199 (213)
T COG4136 168 ALRDQFRQWVFSEVRAAGIPTVQVTHDLQDVP 199 (213)
T ss_pred HHHHHHHHHHHHHHHhcCCCeEEEecccccCC
Confidence 77 66666653 55667888899999988765
No 372
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.87 E-value=7.1e-23 Score=176.23 Aligned_cols=81 Identities=6% Similarity=0.009 Sum_probs=70.2
Q ss_pred cccccccCHHHHHHHhccccCCC----------CCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHH
Q psy2071 152 KTVLKYMTDGMLLREGMSDPMLE----------NYQVILLDEAHERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAG 220 (302)
Q Consensus 152 ~~~~~~lS~G~~qr~~la~al~~----------~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~ 220 (302)
+..+..||+||+||+++|++++. +|+++|||| |++++|+.. ..+.+++....+.+.|++++||+++
T Consensus 118 ~~~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDE---p~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~ 194 (213)
T cd03279 118 ARPVSTLSGGETFLASLSLALALSEVLQNRGGARLEALFIDE---GFGTLDPEALEAVATALELIRTENRMVGVISHVEE 194 (213)
T ss_pred cCCccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeC---CcccCCHHHHHHHHHHHHHHHhCCCEEEEEECchH
Confidence 44567799999999999999974 678999999 999999877 7777888776655889999999999
Q ss_pred HHHhhccCCCeeeecC
Q psy2071 221 KFQQYFDNAPLMNVPG 236 (302)
Q Consensus 221 ~~~~~~d~~~~l~i~g 236 (302)
.+..++|++.+++ .|
T Consensus 195 ~~~~~~~~i~~~~-~~ 209 (213)
T cd03279 195 LKERIPQRLEVIK-TP 209 (213)
T ss_pred HHHhhCcEEEEEe-cC
Confidence 9999999999998 44
No 373
>PLN03232 ABC transporter C family member; Provisional
Probab=99.87 E-value=1.1e-23 Score=224.33 Aligned_cols=160 Identities=19% Similarity=0.199 Sum_probs=113.0
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhhccccccceeeeeee
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRF 145 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 145 (302)
.++++++.|++|+.++|+|++|||||||++.|+|+++|++|.+..... .++...+. ...++.++.+|+.+.-.+
T Consensus 632 vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~~~~---~Iayv~Q~---p~Lf~gTIreNI~fg~~~ 705 (1495)
T PLN03232 632 TLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRG---SVAYVPQV---SWIFNATVRENILFGSDF 705 (1495)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEEEecC---cEEEEcCc---cccccccHHHHhhcCCcc
Confidence 589999999999999999999999999999999999999986532110 11111111 111233444444432211
Q ss_pred c------------------CC-CCccccc----cccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-H-HHHH
Q psy2071 146 E------------------DC-SSPKTVL----KYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-G-VLKE 200 (302)
Q Consensus 146 ~------------------~~-~~~~~~~----~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~-~l~~ 200 (302)
. .. ...++.+ ..||||||||++||||+..+|+++|||| |++++|... . ++.+
T Consensus 706 ~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlLLDE---ptSaLD~~t~~~I~~~ 782 (1495)
T PLN03232 706 ESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDD---PLSALDAHVAHQVFDS 782 (1495)
T ss_pred CHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEEEcC---CccccCHHHHHHHHHH
Confidence 0 00 0112333 3599999999999999999999999999 999999776 3 4455
Q ss_pred HHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCc
Q psy2071 201 VIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGR 237 (302)
Q Consensus 201 ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~ 237 (302)
++.... .+.|+|++||+++.+ ..||+|++|+ .|+
T Consensus 783 ~l~~~l-~~kT~IlvTH~~~~l-~~aD~Ii~L~-~G~ 816 (1495)
T PLN03232 783 CMKDEL-KGKTRVLVTNQLHFL-PLMDRIILVS-EGM 816 (1495)
T ss_pred Hhhhhh-cCCEEEEEECChhhH-HhCCEEEEEe-CCE
Confidence 555322 367999999999865 5799999998 554
No 374
>PTZ00243 ABC transporter; Provisional
Probab=99.87 E-value=1.3e-23 Score=223.86 Aligned_cols=159 Identities=18% Similarity=0.156 Sum_probs=112.9
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhhccccccceeeeee-
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIR- 144 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~- 144 (302)
+++++++.|++|++++|+||||||||||+++|+|+++|++|.+.+.+ +++...+... .+..++.+++.+...
T Consensus 675 iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~~----~i~yv~Q~~~---l~~~Tv~enI~~~~~~ 747 (1560)
T PTZ00243 675 LLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAER----SIAYVPQQAW---IMNATVRGNILFFDEE 747 (1560)
T ss_pred eEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC----eEEEEeCCCc---cCCCcHHHHHHcCChh
Confidence 57899999999999999999999999999999999999999886532 1111111000 011122222221100
Q ss_pred --------------------e--cCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-H-HHHH
Q psy2071 145 --------------------F--EDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-G-VLKE 200 (302)
Q Consensus 145 --------------------~--~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~-~l~~ 200 (302)
+ ............||||||||++||||++.+|+++|||| |++++|+.. . ++.+
T Consensus 748 ~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDE---P~saLD~~~~~~i~~~ 824 (1560)
T PTZ00243 748 DAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDD---PLSALDAHVGERVVEE 824 (1560)
T ss_pred hHHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcC---ccccCCHHHHHHHHHH
Confidence 0 00011133456799999999999999999999999999 999999865 4 3444
Q ss_pred HHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCc
Q psy2071 201 VIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGR 237 (302)
Q Consensus 201 ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~ 237 (302)
++.... .+.|+|++||+++.+ .+||++++|+ .|+
T Consensus 825 ~~~~~~-~~~TvIlvTH~~~~~-~~ad~ii~l~-~G~ 858 (1560)
T PTZ00243 825 CFLGAL-AGKTRVLATHQVHVV-PRADYVVALG-DGR 858 (1560)
T ss_pred HHHHhh-CCCEEEEEeCCHHHH-HhCCEEEEEE-CCE
Confidence 443222 378999999999988 5799999998 554
No 375
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.86 E-value=2.3e-20 Score=187.30 Aligned_cols=188 Identities=39% Similarity=0.609 Sum_probs=163.1
Q ss_pred CCChhHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhhccccccce
Q psy2071 60 TLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEV 139 (302)
Q Consensus 60 ~lp~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 139 (302)
.||++.++++|..++.+++.+++.|++||||||.+++.+.......| .+.+.+|++..+..++.+++.+++..++..+
T Consensus 3 ~LPi~~~~~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~~~~--~ilvlqPrR~aA~qia~rva~~l~~~~g~~V 80 (812)
T PRK11664 3 SLPVAAVLPELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGGING--KIIMLEPRRLAARNVAQRLAEQLGEKPGETV 80 (812)
T ss_pred CCCHHHHHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCCcCC--eEEEECChHHHHHHHHHHHHHHhCcccCceE
Confidence 49999999999999999999999999999999999876543222234 5677899999999999999988888899999
Q ss_pred eeeeeecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHHHHHHHHHHH-cCCCcEEEEEEecC
Q psy2071 140 GYSIRFEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILMGVLKEVIKQ-RADLKLVIMSATLD 218 (302)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~~~l~~ll~~-~~~~~~~ii~~thd 218 (302)
||.++++.....++.+..++.|...+.......+.+.++||+||+|+++...|..+..+.++++. ..+.++++|++|.+
T Consensus 81 Gy~vr~~~~~~~~t~I~v~T~G~Llr~l~~d~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~lqlilmSATl~ 160 (812)
T PRK11664 81 GYRMRAESKVGPNTRLEVVTEGILTRMIQRDPELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLD 160 (812)
T ss_pred EEEecCccccCCCCcEEEEChhHHHHHHhhCCCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCccceEEEEecCCC
Confidence 99999887777778899999999998877788899999999999999999999888777777664 34668999999999
Q ss_pred HHHHHhhccCCCeeeecCcCCccceeecCCC
Q psy2071 219 AGKFQQYFDNAPLMNVPGRTHPVEIFYTPEP 249 (302)
Q Consensus 219 ~~~~~~~~d~~~~l~i~g~~~~~~~~~~~~~ 249 (302)
.+.+.+|+....++.++|+.+|++.+|.+.+
T Consensus 161 ~~~l~~~~~~~~~I~~~gr~~pV~~~y~~~~ 191 (812)
T PRK11664 161 NDRLQQLLPDAPVIVSEGRSFPVERRYQPLP 191 (812)
T ss_pred HHHHHHhcCCCCEEEecCccccceEEeccCc
Confidence 9989999988889999999999999997643
No 376
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.85 E-value=2.1e-22 Score=172.07 Aligned_cols=160 Identities=19% Similarity=0.139 Sum_probs=104.2
Q ss_pred HHHhCCEEEEEccCCCCccchhhhhh----hcccccCCCEEEeecCch------hhhHHHHHH---Hhhhhhccccccce
Q psy2071 73 LLAQNQCIVLVGETGSGKTTQIPQWC----VEYSKSVGAKAVACTQPR------RVAAMSVAQ---RVSEEMDCQLGQEV 139 (302)
Q Consensus 73 ~i~~g~i~~liG~nGsGKSTll~~i~----g~~~~~~G~~~i~~~~~~------~~~~~~~~~---~~~~~~~~~~~~~v 139 (302)
.+.+| +++|+||||||||||+.+|. |...|+.|.+........ .+....... .+......++.+++
T Consensus 19 ~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~~~~~~~ 97 (204)
T cd03240 19 EFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSLAILENV 97 (204)
T ss_pred ecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEhhHhhce
Confidence 34556 99999999999999999985 777776664431000000 000000000 00000111333444
Q ss_pred eeeeeecCCCCccccccccCHHHHHH------HhccccCCCCCcEEEEcCCCCCCcchHHHH-H-HHHHHHHHcCCC-cE
Q psy2071 140 GYSIRFEDCSSPKTVLKYMTDGMLLR------EGMSDPMLENYQVILLDEAHERTLATDILM-G-VLKEVIKQRADL-KL 210 (302)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~lS~G~~qr------~~la~al~~~p~lliLDE~~~p~~~lD~~~-~-~l~~ll~~~~~~-~~ 210 (302)
.+..........+..+..||+||+|| ++++++++.+|+++|+|| |+.++|+.. . .+.+++....+. +.
T Consensus 98 ~~~~~~~~~~~~~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDE---P~~~LD~~~~~~~l~~~l~~~~~~~~~ 174 (204)
T cd03240 98 IFCHQGESNWPLLDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDE---PTTNLDEENIEESLAEIIEERKSQKNF 174 (204)
T ss_pred eeechHHHHHHHhcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcC---CccccCHHHHHHHHHHHHHHHHhccCC
Confidence 33221111111244567899999996 689999999999999999 999999877 6 788888776554 78
Q ss_pred EEEEEecCHHHHHhhccCCCeeeecCc
Q psy2071 211 VIMSATLDAGKFQQYFDNAPLMNVPGR 237 (302)
Q Consensus 211 ~ii~~thd~~~~~~~~d~~~~l~i~g~ 237 (302)
+++++||+.+.+ ..||+++.|.-.|+
T Consensus 175 ~iiiitH~~~~~-~~~d~i~~l~~~~~ 200 (204)
T cd03240 175 QLIVITHDEELV-DAADHIYRVEKDGR 200 (204)
T ss_pred EEEEEEecHHHH-hhCCEEEEEeeCCC
Confidence 999999999876 57999998875554
No 377
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.85 E-value=1.4e-20 Score=188.59 Aligned_cols=186 Identities=35% Similarity=0.549 Sum_probs=161.9
Q ss_pred CChhHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhhcccccccee
Q psy2071 61 LPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVG 140 (302)
Q Consensus 61 lp~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 140 (302)
||++.++++|...|..++.+.|.|++||||||.+++.+...... ...+.+.+|++..+..++.+++.+++..++..||
T Consensus 1 LPi~~~~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~~--~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VG 78 (819)
T TIGR01970 1 LPIHAVLPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPGI--GGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVG 78 (819)
T ss_pred CCchHHHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhcc--CCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEE
Confidence 79999999999999999999999999999999998875433212 2356778999999999999999888888899999
Q ss_pred eeeeecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHHHHHHHHHHH-cCCCcEEEEEEecCH
Q psy2071 141 YSIRFEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILMGVLKEVIKQ-RADLKLVIMSATLDA 219 (302)
Q Consensus 141 ~~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~~~l~~ll~~-~~~~~~~ii~~thd~ 219 (302)
|.+++......++.+..++.|...|.......+.+.++||+||+||++...|..+..+.++... ..+.++++|++|.+.
T Consensus 79 y~vr~~~~~s~~t~I~v~T~G~Llr~l~~d~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~dlqlIlmSATl~~ 158 (819)
T TIGR01970 79 YRVRGENKVSRRTRLEVVTEGILTRMIQDDPELDGVGALIFDEFHERSLDADLGLALALDVQSSLREDLKILAMSATLDG 158 (819)
T ss_pred EEEccccccCCCCcEEEECCcHHHHHHhhCcccccCCEEEEeccchhhhccchHHHHHHHHHHhcCCCceEEEEeCCCCH
Confidence 9999987777778899999999999888888899999999999999998889877777776654 346689999999999
Q ss_pred HHHHhhccCCCeeeecCcCCccceeecCC
Q psy2071 220 GKFQQYFDNAPLMNVPGRTHPVEIFYTPE 248 (302)
Q Consensus 220 ~~~~~~~d~~~~l~i~g~~~~~~~~~~~~ 248 (302)
+.+.+|+....++.++|+.+|++++|.+.
T Consensus 159 ~~l~~~l~~~~vI~~~gr~~pVe~~y~~~ 187 (819)
T TIGR01970 159 ERLSSLLPDAPVVESEGRSFPVEIRYLPL 187 (819)
T ss_pred HHHHHHcCCCcEEEecCcceeeeeEEeec
Confidence 98999998889999999999999999764
No 378
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.85 E-value=1e-23 Score=168.75 Aligned_cols=118 Identities=15% Similarity=0.210 Sum_probs=81.0
Q ss_pred HHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhh---h----hhccccccc---
Q psy2071 69 EFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVS---E----EMDCQLGQE--- 138 (302)
Q Consensus 69 ~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~---~----~~~~~~~~~--- 138 (302)
++++.|++|++++|+|+||||||||+++|+|.++|++|.+.+++.+............+. + ....++.++
T Consensus 3 ~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~~~~ 82 (137)
T PF00005_consen 3 NVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVRENESD 82 (137)
T ss_dssp EEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHHHHH
T ss_pred ceEEEEcCCCEEEEEccCCCccccceeeeccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 456678999999999999999999999999999999999999987665422222222111 1 111122221
Q ss_pred --eeeeee-ecCCCCcccc----ccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCc
Q psy2071 139 --VGYSIR-FEDCSSPKTV----LKYMTDGMLLREGMSDPMLENYQVILLDEAHERTL 189 (302)
Q Consensus 139 --v~~~~~-~~~~~~~~~~----~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~ 189 (302)
+...+. +......++. ...||+||+||++||+||+.+|++||||| ||+
T Consensus 83 ~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDE---Pt~ 137 (137)
T PF00005_consen 83 ERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDE---PTN 137 (137)
T ss_dssp HHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEES---TTT
T ss_pred ccccccccccccccccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeC---CCC
Confidence 000000 0001112233 38899999999999999999999999999 874
No 379
>KOG0061|consensus
Probab=99.85 E-value=7.1e-23 Score=200.49 Aligned_cols=171 Identities=15% Similarity=0.174 Sum_probs=129.7
Q ss_pred hhHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccc---cCCCEEEeecCchhhhHHHHHHHhhh----hhcccc
Q psy2071 63 VFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSK---SVGAKAVACTQPRRVAAMSVAQRVSE----EMDCQL 135 (302)
Q Consensus 63 ~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~---~~G~~~i~~~~~~~~~~~~~~~~~~~----~~~~~~ 135 (302)
...++++|+-.+++||+.||+||+|||||||+++++|.... .+|.+.++|.............++.+ ....|+
T Consensus 42 ~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~LTV 121 (613)
T KOG0061|consen 42 TKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPTLTV 121 (613)
T ss_pred cceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhhheeEEEcccccccccccH
Confidence 45578999999999999999999999999999999998864 56999999954433322222233322 234556
Q ss_pred ccceeeeeeecCC----------------------CCcccccc-----ccCHHHHHHHhccccCCCCCcEEEEcCCCCCC
Q psy2071 136 GQEVGYSIRFEDC----------------------SSPKTVLK-----YMTDGMLLREGMSDPMLENYQVILLDEAHERT 188 (302)
Q Consensus 136 ~~~v~~~~~~~~~----------------------~~~~~~~~-----~lS~G~~qr~~la~al~~~p~lliLDE~~~p~ 188 (302)
.+.+.|...+... .-.++.+. -+|||||+|+++|.-++.+|.+|++|| ||
T Consensus 122 ~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDE---PT 198 (613)
T KOG0061|consen 122 RETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDE---PT 198 (613)
T ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcCCCEEEecC---CC
Confidence 6655554422211 11334443 499999999999999999999999999 99
Q ss_pred cchHHHH-HHHHHHHHHcCCCcEEEEEEecCH-HHHHhhccCCCeeeecCc
Q psy2071 189 LATDILM-GVLKEVIKQRADLKLVIMSATLDA-GKFQQYFDNAPLMNVPGR 237 (302)
Q Consensus 189 ~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~-~~~~~~~d~~~~l~i~g~ 237 (302)
+|+|... ..+.++++++...|.|||++-|.. .++.+++|++++|. .|+
T Consensus 199 SGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs-~G~ 248 (613)
T KOG0061|consen 199 SGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLS-EGE 248 (613)
T ss_pred CCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhc-CCc
Confidence 9999777 667778887766699999988976 57889999999998 664
No 380
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.84 E-value=7.3e-22 Score=173.26 Aligned_cols=78 Identities=14% Similarity=0.141 Sum_probs=66.0
Q ss_pred cccccccCHHHHHHHhccccCC----CCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhc
Q psy2071 152 KTVLKYMTDGMLLREGMSDPML----ENYQVILLDEAHERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYF 226 (302)
Q Consensus 152 ~~~~~~lS~G~~qr~~la~al~----~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~ 226 (302)
+.....||+||+||++||++++ .+|+++|+|| |++++|+.. ..+.+.+.+..+ +.+++++||+.+ +.++|
T Consensus 153 ~~~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDE---p~~~ld~~~~~~~~~~l~~~~~-~~~ii~~~h~~~-~~~~~ 227 (243)
T cd03272 153 QQEMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDE---IDAALDAQYRTAVANMIKELSD-GAQFITTTFRPE-LLEVA 227 (243)
T ss_pred cccccccCHHHHHHHHHHHHHHHhccCCCCEEEEEC---CccCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH-HHhhC
Confidence 3566789999999999999996 3689999999 999999887 777888877655 678888888855 67899
Q ss_pred cCCCeeee
Q psy2071 227 DNAPLMNV 234 (302)
Q Consensus 227 d~~~~l~i 234 (302)
|++++|..
T Consensus 228 d~i~~l~~ 235 (243)
T cd03272 228 DKFYGVKF 235 (243)
T ss_pred CEEEEEEE
Confidence 99999984
No 381
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=1e-21 Score=177.51 Aligned_cols=171 Identities=16% Similarity=0.203 Sum_probs=126.3
Q ss_pred CChhHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhh------hccc
Q psy2071 61 LPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEE------MDCQ 134 (302)
Q Consensus 61 lp~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~------~~~~ 134 (302)
.|....+.++++.+..|+.++++|++|+||||+++.+...+.+.+|.|.++|++.+.....++...+... ++.+
T Consensus 273 ~~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq~slR~aIg~VPQDtvLFNDt 352 (497)
T COG5265 273 DPRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDT 352 (497)
T ss_pred cccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhHHHHHHHHhCcCcccceehhhh
Confidence 3555678999999999999999999999999999999999999999999999987765544444333222 2233
Q ss_pred cccceeeeeeecC--------------------CCCccc----cccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcc
Q psy2071 135 LGQEVGYSIRFED--------------------CSSPKT----VLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLA 190 (302)
Q Consensus 135 ~~~~v~~~~~~~~--------------------~~~~~~----~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~ 190 (302)
...++.|.-..-. ....++ +--.||||+|||+++||+++.+|+++++|| .|++
T Consensus 353 i~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~ilk~p~il~~de---atsa 429 (497)
T COG5265 353 IAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILDE---ATSA 429 (497)
T ss_pred HHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHHhcCCCEEEEeh---hhhH
Confidence 3344444321000 001122 223399999999999999999999999999 8999
Q ss_pred hHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCc
Q psy2071 191 TDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGR 237 (302)
Q Consensus 191 lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~ 237 (302)
+|... +.+..-++.... +.|-+++.|-+..+. -+|.++||+ .|+
T Consensus 430 ldt~te~~iq~~l~~~~~-~rttlviahrlsti~-~adeiivl~-~g~ 474 (497)
T COG5265 430 LDTHTEQAIQAALREVSA-GRTTLVIAHRLSTII-DADEIIVLD-NGR 474 (497)
T ss_pred hhhhHHHHHHHHHHHHhC-CCeEEEEeehhhhcc-CCceEEEee-CCE
Confidence 99877 667777776554 445555589888775 478999998 665
No 382
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.84 E-value=1.3e-21 Score=157.81 Aligned_cols=164 Identities=17% Similarity=0.170 Sum_probs=119.1
Q ss_pred HHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHH---hhh----hhcccccccee-
Q psy2071 69 EFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQR---VSE----EMDCQLGQEVG- 140 (302)
Q Consensus 69 ~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~---~~~----~~~~~~~~~v~- 140 (302)
.++..+..|+++-+|||||||||||+-.++|+. |.+|+|.+.|.+....+...+++. .++ .+.+.+...+.
T Consensus 17 plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~-~~sGsi~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mpV~~YL~L 95 (248)
T COG4138 17 PLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMPVWHYLTL 95 (248)
T ss_pred ccccccccceEEEEECCCCccHHHHHHHHhCCC-CCCceEEECCcchhHHhHhHHHHHHHHHhhccCCcchhhhhhhhhh
Confidence 346678999999999999999999999999986 578999999987654443333321 111 11112221111
Q ss_pred ------------eeeeec-CCCCccccccccCHHHHHHHhccccCCC-------CCcEEEEcCCCCCCcchHHHH-HHHH
Q psy2071 141 ------------YSIRFE-DCSSPKTVLKYMTDGMLLREGMSDPMLE-------NYQVILLDEAHERTLATDILM-GVLK 199 (302)
Q Consensus 141 ------------~~~~~~-~~~~~~~~~~~lS~G~~qr~~la~al~~-------~p~lliLDE~~~p~~~lD~~~-~~l~ 199 (302)
+..+.- ......+.+..||||+-|||-+|...+. ..+++|+|| |.+++|... ..+.
T Consensus 96 ~qP~~~~a~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDE---P~~~LDvAQ~~aLd 172 (248)
T COG4138 96 HQPDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDE---PMNSLDVAQQSALD 172 (248)
T ss_pred cCchHHHHHHHHHHHhhhcccchhhhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEecC---CCcchhHHHHHHHH
Confidence 111110 1112334567799999999999876543 346899999 999999887 6678
Q ss_pred HHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCc
Q psy2071 200 EVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGR 237 (302)
Q Consensus 200 ~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~ 237 (302)
.++......|.+||+++||++--.+.+|++++++ .|.
T Consensus 173 rll~~~c~~G~~vims~HDLNhTLrhA~~~wLL~-rG~ 209 (248)
T COG4138 173 RLLSALCQQGLAIVMSSHDLNHTLRHAHRAWLLK-RGK 209 (248)
T ss_pred HHHHHHHhCCcEEEEeccchhhHHHHHHHHHHHh-cCe
Confidence 8888888889999999999999999999999988 554
No 383
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.83 E-value=3.2e-21 Score=169.83 Aligned_cols=78 Identities=14% Similarity=0.099 Sum_probs=69.0
Q ss_pred cccccccCHHHHHHHhccccCCCC---CcEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhcc
Q psy2071 152 KTVLKYMTDGMLLREGMSDPMLEN---YQVILLDEAHERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFD 227 (302)
Q Consensus 152 ~~~~~~lS~G~~qr~~la~al~~~---p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d 227 (302)
+.....||+||+||++||++|+.+ |+++|||| |++++|+.. ..+.+++....+.|.|++++||+++.+. .||
T Consensus 164 ~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDE---PtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~~i~-~aD 239 (261)
T cd03271 164 GQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDE---PTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDVIK-CAD 239 (261)
T ss_pred cCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEEC---CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH-hCC
Confidence 456778999999999999999996 79999999 999999887 7788888876666889999999999885 799
Q ss_pred CCCeee
Q psy2071 228 NAPLMN 233 (302)
Q Consensus 228 ~~~~l~ 233 (302)
+++.|.
T Consensus 240 ~ii~Lg 245 (261)
T cd03271 240 WIIDLG 245 (261)
T ss_pred EEEEec
Confidence 999995
No 384
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.83 E-value=1.2e-20 Score=161.98 Aligned_cols=77 Identities=13% Similarity=0.124 Sum_probs=65.2
Q ss_pred cccccccCHHHHHHHhccccCCC----CCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhc
Q psy2071 152 KTVLKYMTDGMLLREGMSDPMLE----NYQVILLDEAHERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYF 226 (302)
Q Consensus 152 ~~~~~~lS~G~~qr~~la~al~~----~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~ 226 (302)
++.+..+|+||+||+++|++++. .|+++|+|| |+.++|+.. ..+.+++.+..+ +.+++++||+ +++.++|
T Consensus 122 ~~~~~~lS~G~~~r~~la~al~~~~~~~p~ililDE---Pt~gLD~~~~~~l~~~l~~~~~-~~~~iivs~~-~~~~~~~ 196 (212)
T cd03274 122 WKNISNLSGGEKTLSSLALVFALHHYKPTPLYVMDE---IDAALDFRNVSIVANYIKERTK-NAQFIVISLR-NNMFELA 196 (212)
T ss_pred ccchhhcCHHHHHHHHHHHHHHhcccCCCCEEEEcC---CCcCCCHHHHHHHHHHHHHHcC-CCEEEEEECc-HHHHHhC
Confidence 45567799999999999999963 579999999 999999887 788888887754 5677778898 4677899
Q ss_pred cCCCeee
Q psy2071 227 DNAPLMN 233 (302)
Q Consensus 227 d~~~~l~ 233 (302)
|++.+|.
T Consensus 197 d~v~~~~ 203 (212)
T cd03274 197 DRLVGIY 203 (212)
T ss_pred CEEEEEE
Confidence 9999997
No 385
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.82 E-value=8.3e-22 Score=176.69 Aligned_cols=181 Identities=18% Similarity=0.154 Sum_probs=125.9
Q ss_pred HHHHhhcCCChh-HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchh---hhHHHHHHHhh
Q psy2071 53 ELHRKRITLPVF-EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRR---VAAMSVAQRVS 128 (302)
Q Consensus 53 ~l~~~r~~lp~~-~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~---~~~~~~~~~~~ 128 (302)
|+.+.|..++.. =.+..|+..|++||++-|+|.|||||||+++.+.|++.|++|+|.++|..... -.+..+...+.
T Consensus 324 elrnvrfay~~~~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfSavF 403 (546)
T COG4615 324 ELRNVRFAYQDNAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVF 403 (546)
T ss_pred eeeeeeeccCcccceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHHHHHh
Confidence 445666666543 23677899999999999999999999999999999999999999999976421 12222222221
Q ss_pred hh---hccccc-------cceeeeee-ec--CCC---CccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchH
Q psy2071 129 EE---MDCQLG-------QEVGYSIR-FE--DCS---SPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATD 192 (302)
Q Consensus 129 ~~---~~~~~~-------~~v~~~~~-~~--~~~---~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD 192 (302)
.. ++...+ +.+...++ .+ ... ..+-....||.|||+|+++.-|++.+-+++++|| -....|
T Consensus 404 sDyhLF~~ll~~e~~as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~Ilv~DE---WAADQD 480 (546)
T COG4615 404 SDYHLFDQLLGPEGKASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDE---WAADQD 480 (546)
T ss_pred hhHhhhHhhhCCccCCChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhCCeEEeeh---hhccCC
Confidence 11 111111 11111111 00 000 0111224599999999999999999999999999 788899
Q ss_pred HHH-HH-HHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 193 ILM-GV-LKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 193 ~~~-~~-l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
|.. +. -..++...+++|+||+.+|||-.-+ ..+||...+. .|+.
T Consensus 481 PaFRR~FY~~lLp~LK~qGKTI~aIsHDd~YF-~~ADrll~~~-~G~~ 526 (546)
T COG4615 481 PAFRREFYQVLLPLLKEQGKTIFAISHDDHYF-IHADRLLEMR-NGQL 526 (546)
T ss_pred hHHHHHHHHHHhHHHHHhCCeEEEEecCchhh-hhHHHHHHHh-cCce
Confidence 988 43 4556667888899999999996554 5789988888 7764
No 386
>KOG0054|consensus
Probab=99.82 E-value=2.7e-21 Score=198.76 Aligned_cols=160 Identities=17% Similarity=0.213 Sum_probs=124.0
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhhccccccceeeeeee
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRF 145 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 145 (302)
.++||++.|++|+.++|+|+.|||||+||.+|+|..+..+|.+.+.|. +++..+. +-.++.++++|+.|.-.+
T Consensus 536 tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gs----iaYv~Q~---pWI~ngTvreNILFG~~~ 608 (1381)
T KOG0054|consen 536 TLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGS----VAYVPQQ---PWIQNGTVRENILFGSPY 608 (1381)
T ss_pred cccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCe----EEEeccc---cHhhCCcHHHhhhcCccc
Confidence 589999999999999999999999999999999999999999999886 2222221 223456777777766544
Q ss_pred cCCC-------------------Cccccc----cccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH--HHHHH
Q psy2071 146 EDCS-------------------SPKTVL----KYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM--GVLKE 200 (302)
Q Consensus 146 ~~~~-------------------~~~~~~----~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~--~~l~~ 200 (302)
+... ...|.+ -+||||||||++||||+-.+.|+++||. |.+++|... .++.+
T Consensus 609 d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDD---plSAVDahvg~~if~~ 685 (1381)
T KOG0054|consen 609 DEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLDD---PLSAVDAHVGKHIFEE 685 (1381)
T ss_pred cHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEcC---cchhhhHhhhHHHHHH
Confidence 3211 112323 3499999999999999999999999999 999999666 55666
Q ss_pred HHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 201 VIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 201 ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
.+... -.++|+|.+||.++.+ ..||.|++|+ .|+.
T Consensus 686 ci~~~-L~~KT~ILVTHql~~L-~~ad~Iivl~-~G~I 720 (1381)
T KOG0054|consen 686 CIRGL-LRGKTVILVTHQLQFL-PHADQIIVLK-DGKI 720 (1381)
T ss_pred HHHhh-hcCCEEEEEeCchhhh-hhCCEEEEec-CCeE
Confidence 66432 2368999999987755 5799999999 6654
No 387
>KOG0054|consensus
Probab=99.81 E-value=5.9e-21 Score=196.31 Aligned_cols=173 Identities=14% Similarity=0.198 Sum_probs=133.3
Q ss_pred hcCCChhHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhh------
Q psy2071 58 RITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEM------ 131 (302)
Q Consensus 58 r~~lp~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~------ 131 (302)
|..+|. ++++|++.|++||-+||+|.+|||||||+.++..+..|.+|.|.|+|.+...++-..+..++.-.+
T Consensus 1149 rp~lp~--VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLF 1226 (1381)
T KOG0054|consen 1149 RPNLPL--VLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLF 1226 (1381)
T ss_pred CCCCcc--hhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCCcee
Confidence 445555 589999999999999999999999999999999999999999999999987777666655543322
Q ss_pred ccccccceeeeeeecC------------------C-CCcccc----ccccCHHHHHHHhccccCCCCCcEEEEcCCCCCC
Q psy2071 132 DCQLGQEVGYSIRFED------------------C-SSPKTV----LKYMTDGMLLREGMSDPMLENYQVILLDEAHERT 188 (302)
Q Consensus 132 ~~~~~~~v~~~~~~~~------------------~-~~~~~~----~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~ 188 (302)
..|++.|+--.-++.+ . ...+.. -.++|-||||.++|||||+.+.++|+||| .|
T Consensus 1227 sGTvR~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skILvLDE---AT 1303 (1381)
T KOG0054|consen 1227 SGTVRFNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDE---AT 1303 (1381)
T ss_pred cCccccccCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCCEEEEec---cc
Confidence 2233333221110000 0 001111 24599999999999999999999999999 89
Q ss_pred cchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 189 LATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 189 ~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
++.|+.. .++++.++..=+ +.||+.+-|.++.+.+ ||+|.||+ .|+.
T Consensus 1304 AsVD~~TD~lIQ~tIR~~F~-dcTVltIAHRl~TVmd-~DrVlVld-~G~v 1351 (1381)
T KOG0054|consen 1304 ASVDPETDALIQKTIREEFK-DCTVLTIAHRLNTVMD-SDRVLVLD-AGRV 1351 (1381)
T ss_pred ccCChHHHHHHHHHHHHHhc-CCeEEEEeeccchhhh-cCeEEEee-CCeE
Confidence 9999988 788888875322 5899999999999986 79999999 6664
No 388
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.81 E-value=5.2e-21 Score=174.33 Aligned_cols=155 Identities=16% Similarity=0.189 Sum_probs=106.7
Q ss_pred HHHhCCEEEEEccCCCCccchhhhhhhcccccCCC---EEEeecCchhhhH---HHHHHHh---hh--hhccccccceee
Q psy2071 73 LLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGA---KAVACTQPRRVAA---MSVAQRV---SE--EMDCQLGQEVGY 141 (302)
Q Consensus 73 ~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~---~~i~~~~~~~~~~---~~~~~~~---~~--~~~~~~~~~v~~ 141 (302)
.|..||+++++||||-||||++++|+|.++|++|. +.+.= .|..+.. .++.+.+ .. ........++.-
T Consensus 363 ~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~~~~~~vSy-KPQyI~~~~~gtV~~~l~~~~~~~~~~s~~~~ei~~ 441 (591)
T COG1245 363 EIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGSEEDLKVSY-KPQYISPDYDGTVEDLLRSAIRSAFGSSYFKTEIVK 441 (591)
T ss_pred eeecceEEEEECCCCcchHHHHHHHhccccCCCCCCccceEee-cceeecCCCCCcHHHHHHHhhhhhcccchhHHhhcC
Confidence 45678899999999999999999999999999995 11110 1111110 0000000 00 111111122222
Q ss_pred eeeecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHc-CCCcEEEEEEecCH
Q psy2071 142 SIRFEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVIKQR-ADLKLVIMSATLDA 219 (302)
Q Consensus 142 ~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~-~~~~~~ii~~thd~ 219 (302)
.+..+ ...++.+..||||++||+++|.+|..+.++.+||| |++.||... -.+.+.+++. .+.+.|.+++.||+
T Consensus 442 pl~l~--~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDE---PSA~LDvEqR~~vakvIRR~~e~~~kta~vVdHDi 516 (591)
T COG1245 442 PLNLE--DLLERPVDELSGGELQRVAIAAALSREADLYLLDE---PSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDI 516 (591)
T ss_pred ccchH--HHHhcccccCCchhHHHHHHHHHhccccCEEEecC---chhhccHHHHHHHHHHHHHHHhhcCceEEEEecce
Confidence 22222 22456788999999999999999999999999999 999999766 3445555543 23478899999999
Q ss_pred HHHHhhccCCCeee
Q psy2071 220 GKFQQYFDNAPLMN 233 (302)
Q Consensus 220 ~~~~~~~d~~~~l~ 233 (302)
-.+.-++|+++++.
T Consensus 517 ~~~dyvsDr~ivF~ 530 (591)
T COG1245 517 YMIDYVSDRLIVFE 530 (591)
T ss_pred ehhhhhhceEEEEe
Confidence 99999999999987
No 389
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.81 E-value=8.6e-21 Score=177.86 Aligned_cols=174 Identities=16% Similarity=0.176 Sum_probs=134.8
Q ss_pred CChhHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHH-HHH---HHh-------hh
Q psy2071 61 LPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAM-SVA---QRV-------SE 129 (302)
Q Consensus 61 lp~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~-~~~---~~~-------~~ 129 (302)
+..+...+++++.+.+|||++|.|-=|||+|-+++.|.|..++.+|++.++|......... .+. .++ ..
T Consensus 269 l~~~~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl 348 (500)
T COG1129 269 LSGGGKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGL 348 (500)
T ss_pred CCCCCceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcCCEeCCcccccCcC
Confidence 4444457899999999999999999999999999999999889999999999754322111 000 011 11
Q ss_pred hhccccccceeeee--e----------------------ec-CCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCC
Q psy2071 130 EMDCQLGQEVGYSI--R----------------------FE-DCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEA 184 (302)
Q Consensus 130 ~~~~~~~~~v~~~~--~----------------------~~-~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~ 184 (302)
.+..++.+|+.... + +. .....+..+..||||.+||+.||+.|+.+|++|||||
T Consensus 349 ~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVvlarwL~~~p~vLilDE- 427 (500)
T COG1129 349 VLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLARWLATDPKVLILDE- 427 (500)
T ss_pred cCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhhHHHHHHHhcCCCEEEECC-
Confidence 22334444443331 0 00 0112345677799999999999999999999999999
Q ss_pred CCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 185 HERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 185 ~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
||.|.|.-. ..+.++++++.+.|++|+++|-+++++..+||||.||+ .|+.
T Consensus 428 --PTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElpEll~~~DRIlVm~-~Gri 479 (500)
T COG1129 428 --PTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPELLGLSDRILVMR-EGRI 479 (500)
T ss_pred --CCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChHHHHhhCCEEEEEE-CCEE
Confidence 999999888 78999999988889999999999999999999999999 7775
No 390
>KOG0927|consensus
Probab=99.81 E-value=1.3e-20 Score=174.87 Aligned_cols=163 Identities=17% Similarity=0.148 Sum_probs=115.3
Q ss_pred HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecC-chhhhH---------HHHHHHhhhhhc-c
Q psy2071 65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQ-PRRVAA---------MSVAQRVSEEMD-C 133 (302)
Q Consensus 65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~-~~~~~~---------~~~~~~~~~~~~-~ 133 (302)
...+++++.|+.++.+++||||||||||||++++|++.|+.|.+.-.-.. ..+... .....++...+. .
T Consensus 404 ~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~~~~~y~Qh~~e~ldl~~s~le~~~~~~~~~ 483 (614)
T KOG0927|consen 404 MIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNKLPRYNQHLAEQLDLDKSSLEFMMPKFPDE 483 (614)
T ss_pred hhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccccccccccccccchhhhhhhHhhcCcchhHHHHHHHhcccc
Confidence 45688899999999999999999999999999999999999976432111 000000 000011111111 1
Q ss_pred ccccceeeee-eecCC-CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcE
Q psy2071 134 QLGQEVGYSI-RFEDC-SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVIKQRADLKL 210 (302)
Q Consensus 134 ~~~~~v~~~~-~~~~~-~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~ 210 (302)
+..+.+.-.+ ++... ......+..||+|||.||.+|+.++.+|.+|+||| ||+++|.-. ..+.+.++... -
T Consensus 484 ~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDE---PtnhLDi~tid~laeaiNe~~---G 557 (614)
T KOG0927|consen 484 KELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDE---PTNHLDIETIDALAEAINEFP---G 557 (614)
T ss_pred chHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEecC---CCcCCCchhHHHHHHHHhccC---C
Confidence 1111111111 22211 23346788999999999999999999999999999 999999655 78888887653 3
Q ss_pred EEEEEecCHHHHHhhccCCCeee
Q psy2071 211 VIMSATLDAGKFQQYFDNAPLMN 233 (302)
Q Consensus 211 ~ii~~thd~~~~~~~~d~~~~l~ 233 (302)
++|.+|||+-.+.++++++++..
T Consensus 558 gvv~vSHDfrlI~qVaeEi~~c~ 580 (614)
T KOG0927|consen 558 GVVLVSHDFRLISQVAEEIWVCE 580 (614)
T ss_pred ceeeeechhhHHHHHHHHhHhhc
Confidence 67778999999999999999887
No 391
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.80 E-value=1.7e-20 Score=165.50 Aligned_cols=76 Identities=14% Similarity=0.069 Sum_probs=64.2
Q ss_pred ccccccCHHHHHHHhccccCC----CCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhcc
Q psy2071 153 TVLKYMTDGMLLREGMSDPML----ENYQVILLDEAHERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFD 227 (302)
Q Consensus 153 ~~~~~lS~G~~qr~~la~al~----~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d 227 (302)
..+..||+||+||+++|++++ .+|+++|+|| |++++|+.. ..+.+++....+ +.++|++||+ .++.+.||
T Consensus 162 ~~~~~lS~G~~qr~~la~al~~~~~~~~~illlDE---Pt~~ld~~~~~~~~~~l~~~~~-g~~ii~iSH~-~~~~~~~d 236 (251)
T cd03273 162 ESLTELSGGQRSLVALSLILALLLFKPAPMYILDE---VDAALDLSHTQNIGRMIKTHFK-GSQFIVVSLK-EGMFNNAN 236 (251)
T ss_pred ccccccCHHHHHHHHHHHHHHHhhccCCCEEEEeC---CCcCCCHHHHHHHHHHHHHHcC-CCEEEEEECC-HHHHHhCC
Confidence 456779999999999999987 5789999999 999999877 777788876644 7899999999 55666899
Q ss_pred CCCeee
Q psy2071 228 NAPLMN 233 (302)
Q Consensus 228 ~~~~l~ 233 (302)
+++-+.
T Consensus 237 ~v~~~~ 242 (251)
T cd03273 237 VLFRTR 242 (251)
T ss_pred EEEEEE
Confidence 997776
No 392
>KOG0062|consensus
Probab=99.80 E-value=5.7e-21 Score=176.29 Aligned_cols=157 Identities=16% Similarity=0.188 Sum_probs=108.6
Q ss_pred hHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecC-------chh-h----hHHHHHHHhhhhh
Q psy2071 64 FEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQ-------PRR-V----AAMSVAQRVSEEM 131 (302)
Q Consensus 64 ~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~-------~~~-~----~~~~~~~~~~~~~ 131 (302)
..++.+-+..+..|.-+||+|+||+||||||++|+- |.+.....+ ... . +.......+..+.
T Consensus 93 k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~------~~v~~f~veqE~~g~~t~~~~~~l~~D~~~~dfl~~e~ 166 (582)
T KOG0062|consen 93 KILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN------GQVSGFHVEQEVRGDDTEALQSVLESDTERLDFLAEEK 166 (582)
T ss_pred hhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh------cCcCccCchhheeccchHHHhhhhhccHHHHHHHHhhh
Confidence 345666678889999999999999999999999975 222222211 000 0 0011111222221
Q ss_pred ccccc-------cceeeeeeecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHH
Q psy2071 132 DCQLG-------QEVGYSIRFEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVIK 203 (302)
Q Consensus 132 ~~~~~-------~~v~~~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~ 203 (302)
....+ ..+.+.+.|.. .........||||-|.|++|||||..+||+|+||| ||+.||... ..|.+.+.
T Consensus 167 ~l~~~~~l~ei~~~~L~glGFt~-emq~~pt~slSGGWrMrlaLARAlf~~pDlLLLDE---PTNhLDv~av~WLe~yL~ 242 (582)
T KOG0062|consen 167 ELLAGLTLEEIYDKILAGLGFTP-EMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDE---PTNHLDVVAVAWLENYLQ 242 (582)
T ss_pred hhhccchHHHHHHHHHHhCCCCH-HHHhccccccCcchhhHHHHHHHHhcCCCEEeecC---CcccchhHHHHHHHHHHh
Confidence 11111 11222222211 23346778899999999999999999999999999 999999776 88888877
Q ss_pred HcCCCcEEEEEEecCHHHHHhhccCCCeee
Q psy2071 204 QRADLKLVIMSATLDAGKFQQYFDNAPLMN 233 (302)
Q Consensus 204 ~~~~~~~~ii~~thd~~~~~~~~d~~~~l~ 233 (302)
.+ ++|+++||||-+++...|..|+.++
T Consensus 243 t~---~~T~liVSHDr~FLn~V~tdIIH~~ 269 (582)
T KOG0062|consen 243 TW---KITSLIVSHDRNFLNTVCTDIIHLE 269 (582)
T ss_pred hC---CceEEEEeccHHHHHHHHHHHHHHh
Confidence 65 5899999999999999999888876
No 393
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.79 E-value=2.9e-19 Score=157.20 Aligned_cols=81 Identities=14% Similarity=0.069 Sum_probs=68.6
Q ss_pred ccccccCHHHHHHHhccccCCCC----CcEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhcc
Q psy2071 153 TVLKYMTDGMLLREGMSDPMLEN----YQVILLDEAHERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFD 227 (302)
Q Consensus 153 ~~~~~lS~G~~qr~~la~al~~~----p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d 227 (302)
+.+..||+||+||++||++++.+ |+++|||| |++++|+.. ..+.+++.+..+.+.+++++||+.+. ..+||
T Consensus 151 ~~~~~LS~G~k~rl~la~al~~~~~~~p~~lllDE---Pt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~~~-~~~~d 226 (247)
T cd03275 151 RDMDNLSGGEKTMAALALLFAIHSYQPAPFFVLDE---VDAALDNTNVGKVASYIREQAGPNFQFIVISLKEEF-FSKAD 226 (247)
T ss_pred hhHHHcCHHHHHHHHHHHHHHHhccCCCCEEEEec---ccccCCHHHHHHHHHHHHHhccCCcEEEEEECCHHH-HhhCC
Confidence 44578999999999999999864 89999999 999999877 77788888776668899999999765 47899
Q ss_pred CCCeeeecCc
Q psy2071 228 NAPLMNVPGR 237 (302)
Q Consensus 228 ~~~~l~i~g~ 237 (302)
++++|.-.+.
T Consensus 227 ~i~~~~~~~~ 236 (247)
T cd03275 227 ALVGVYRDQE 236 (247)
T ss_pred eEEEEEecCC
Confidence 9999984443
No 394
>KOG0927|consensus
Probab=99.79 E-value=2e-20 Score=173.57 Aligned_cols=174 Identities=15% Similarity=0.201 Sum_probs=118.7
Q ss_pred HHHhhcCCChhHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEe--e--cCchhhhHHH-------
Q psy2071 54 LHRKRITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVA--C--TQPRRVAAMS------- 122 (302)
Q Consensus 54 l~~~r~~lp~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~--~--~~~~~~~~~~------- 122 (302)
+.+....++.+...++..+.+..|+-+||+|+|||||||+|++|.|-..|..-.+.+. . ..+....++.
T Consensus 78 ~~sls~s~~g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls~e~~ps~~~av~~v~~~~~ 157 (614)
T KOG0927|consen 78 IESLSLSFHGVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSREIEPSEKQAVQAVVMETD 157 (614)
T ss_pred eeeeeeccCCceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhcccCCCchHHHHHHHhhhhH
Confidence 3444556666777889999999999999999999999999999999877755433221 1 1111111110
Q ss_pred --------HHHHhhhhhcc-------------------cccc---ceeeeeeecCCCCccccccccCHHHHHHHhccccC
Q psy2071 123 --------VAQRVSEEMDC-------------------QLGQ---EVGYSIRFEDCSSPKTVLKYMTDGMLLREGMSDPM 172 (302)
Q Consensus 123 --------~~~~~~~~~~~-------------------~~~~---~v~~~~~~~~~~~~~~~~~~lS~G~~qr~~la~al 172 (302)
....+...... +... ++...+.| ......+....||||++.|++|||+|
T Consensus 158 ~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf-~~~m~~k~~~~~SgGwrmR~aLAr~L 236 (614)
T KOG0927|consen 158 HERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGF-LSEMQDKKVKDLSGGWRMRAALARAL 236 (614)
T ss_pred HHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCC-CHhHHHHHhhccCchHHHHHHHHHHH
Confidence 00001000000 0000 00000111 01123456677999999999999999
Q ss_pred CCCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeee
Q psy2071 173 LENYQVILLDEAHERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMN 233 (302)
Q Consensus 173 ~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~ 233 (302)
+.+|++|+||| ||++||... ..|.+.+...... ++++++|+-+++-.+|.+|+.+.
T Consensus 237 f~kP~LLLLDE---PtnhLDleA~~wLee~L~k~d~~--~lVi~sh~QDfln~vCT~Ii~l~ 293 (614)
T KOG0927|consen 237 FQKPDLLLLDE---PTNHLDLEAIVWLEEYLAKYDRI--ILVIVSHSQDFLNGVCTNIIHLD 293 (614)
T ss_pred hcCCCEEEecC---CccCCCHHHHHHHHHHHHhccCc--eEEEEecchhhhhhHhhhhheec
Confidence 99999999999 999999877 7888888765432 78888999999999999999988
No 395
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.79 E-value=8.3e-21 Score=161.40 Aligned_cols=79 Identities=11% Similarity=0.119 Sum_probs=66.8
Q ss_pred ccccccccCHHHHHHHhccccC----CCCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHc-CC--CcEEEEEEecCHHHH
Q psy2071 151 PKTVLKYMTDGMLLREGMSDPM----LENYQVILLDEAHERTLATDILM-GVLKEVIKQR-AD--LKLVIMSATLDAGKF 222 (302)
Q Consensus 151 ~~~~~~~lS~G~~qr~~la~al----~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~-~~--~~~~ii~~thd~~~~ 222 (302)
.++.+..||+||+||+++|+++ +.+|+++|||| |+.++|... ..+.+++... .+ .+.+|+++||+++.+
T Consensus 103 ~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDE---P~~glD~~~~~~~~~~l~~~~~~~~~~~~iii~th~~~~i 179 (198)
T cd03276 103 AVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDE---FDVFMDMVNRKISTDLLVKEAKKQPGRQFIFITPQDISGL 179 (198)
T ss_pred cCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecC---cccccCHHHHHHHHHHHHHHHhcCCCcEEEEEECCccccc
Confidence 3556788999999999999998 69999999999 999999877 6666766654 22 346899999999999
Q ss_pred HhhccCCCeee
Q psy2071 223 QQYFDNAPLMN 233 (302)
Q Consensus 223 ~~~~d~~~~l~ 233 (302)
.++ |+|.++.
T Consensus 180 ~~~-d~v~~~~ 189 (198)
T cd03276 180 ASS-DDVKVFR 189 (198)
T ss_pred ccc-cceeEEE
Confidence 886 9999998
No 396
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.78 E-value=5e-20 Score=175.95 Aligned_cols=159 Identities=16% Similarity=0.176 Sum_probs=109.3
Q ss_pred HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhhccccccceeeeee
Q psy2071 65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIR 144 (302)
Q Consensus 65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 144 (302)
..+++.++.+++|+.+.|.|+||||||||++.|+|+.+..+|.+.+-... ....+.|+. ..+..+.++.+.|+-.
T Consensus 407 ~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~~----~~lflpQ~P-Y~p~GtLre~l~YP~~ 481 (604)
T COG4178 407 TLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPADS----ALLFLPQRP-YLPQGTLREALCYPNA 481 (604)
T ss_pred eeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCCCC----ceEEecCCC-CCCCccHHHHHhCCCC
Confidence 35688999999999999999999999999999999999999987553111 001111111 1111233344444332
Q ss_pred ecCC---------------------CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHH
Q psy2071 145 FEDC---------------------SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVI 202 (302)
Q Consensus 145 ~~~~---------------------~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll 202 (302)
.... ...+.--..||+|||||+++||.++++|++++||| -|+++|+.. ..+.+++
T Consensus 482 ~~~~~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v~LDE---ATsALDe~~e~~l~q~l 558 (604)
T COG4178 482 APDFSDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDE---ATSALDEETEDRLYQLL 558 (604)
T ss_pred CCCCChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEec---chhccChHHHHHHHHHH
Confidence 2110 01111224599999999999999999999999999 899999887 6677777
Q ss_pred HHcCCCcEEEEEEecCHHHHHhhccCCCeee
Q psy2071 203 KQRADLKLVIMSATLDAGKFQQYFDNAPLMN 233 (302)
Q Consensus 203 ~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~ 233 (302)
+..- .++|||++.|.... ..+.++..-+.
T Consensus 559 ~~~l-p~~tvISV~Hr~tl-~~~h~~~l~l~ 587 (604)
T COG4178 559 KEEL-PDATVISVGHRPTL-WNFHSRQLELL 587 (604)
T ss_pred HhhC-CCCEEEEeccchhh-HHHHhhheeec
Confidence 6421 26899999997654 45666644443
No 397
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.78 E-value=1.6e-19 Score=153.88 Aligned_cols=144 Identities=16% Similarity=0.187 Sum_probs=96.9
Q ss_pred HHHHHHHhCC-EEEEEccCCCCccchhhhhh-hcccccCC-CEEEeecCchhhhHHHHHHHhhhhhccccccceeeeeee
Q psy2071 69 EFMTLLAQNQ-CIVLVGETGSGKTTQIPQWC-VEYSKSVG-AKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRF 145 (302)
Q Consensus 69 ~i~~~i~~g~-i~~liG~nGsGKSTll~~i~-g~~~~~~G-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 145 (302)
++++.+.+|+ +++|+||||||||||+++++ +.+.+..| .+... .. ......+.+.. .+
T Consensus 19 ~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~--~~---------------~~~~~~~~~~~--~l 79 (200)
T cd03280 19 PLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAA--EG---------------SSLPVFENIFA--DI 79 (200)
T ss_pred cceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCcccc--cc---------------ccCcCccEEEE--ec
Confidence 4577888885 89999999999999999987 22222223 11100 00 00000011111 11
Q ss_pred cCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHH-HHHHHHcCCCcEEEEEEecCHHHHH
Q psy2071 146 EDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVL-KEVIKQRADLKLVIMSATLDAGKFQ 223 (302)
Q Consensus 146 ~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l-~~ll~~~~~~~~~ii~~thd~~~~~ 223 (302)
.........+..+|+||+|+..++++ +.+|+++|+|| |+.++|+.. ..+ ..+++...+.+.+++++||+ ..+.
T Consensus 80 g~~~~l~~~~s~fs~g~~~~~~i~~~-~~~p~llllDE---p~~glD~~~~~~i~~~~l~~l~~~~~~vi~~tH~-~~l~ 154 (200)
T cd03280 80 GDEQSIEQSLSTFSSHMKNIARILQH-ADPDSLVLLDE---LGSGTDPVEGAALAIAILEELLERGALVIATTHY-GELK 154 (200)
T ss_pred CchhhhhcCcchHHHHHHHHHHHHHh-CCCCcEEEEcC---CCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECCH-HHHH
Confidence 11122344567899999999999877 48999999999 999999876 444 45666555558899999998 5577
Q ss_pred hhccCCCeeeecCc
Q psy2071 224 QYFDNAPLMNVPGR 237 (302)
Q Consensus 224 ~~~d~~~~l~i~g~ 237 (302)
.+||++.+|+ .|.
T Consensus 155 ~~~d~~~~l~-~g~ 167 (200)
T cd03280 155 AYAYKREGVE-NAS 167 (200)
T ss_pred HHHhcCCCeE-EEE
Confidence 8999999987 454
No 398
>KOG2355|consensus
Probab=99.74 E-value=5.7e-19 Score=146.04 Aligned_cols=168 Identities=20% Similarity=0.237 Sum_probs=118.1
Q ss_pred HHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHH---HHhhhhhccccc-------
Q psy2071 67 RTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVA---QRVSEEMDCQLG------- 136 (302)
Q Consensus 67 ~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~---~~~~~~~~~~~~------- 136 (302)
..||+..++.|.-..++|.|||||||||++++|-.-...|.+.+.|..+.+-....-. .++..++..++.
T Consensus 30 ~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~~Sgdl~YLGgeW~~~~~~agevpl 109 (291)
T KOG2355|consen 30 FFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLESSGDLSYLGGEWSKTVGIAGEVPL 109 (291)
T ss_pred EEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCccccccccccCceeEecccccccccccccccc
Confidence 4678999999999999999999999999999997766667888888765441111000 001001100000
Q ss_pred ------cceeeeeeecCCC-----------CccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHH
Q psy2071 137 ------QEVGYSIRFEDCS-----------SPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVL 198 (302)
Q Consensus 137 ------~~v~~~~~~~~~~-----------~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l 198 (302)
+..-+.+...... ...-++..+|.||++||.|+..|+...++|+||| -|..+|.+. .-+
T Consensus 110 q~D~sae~mifgV~g~dp~Rre~LI~iLDIdl~WRmHkvSDGqrRRVQicMGLL~PfkVLLLDE---VTVDLDVlARadL 186 (291)
T KOG2355|consen 110 QGDISAEHMIFGVGGDDPERREKLIDILDIDLRWRMHKVSDGQRRRVQICMGLLKPFKVLLLDE---VTVDLDVLARADL 186 (291)
T ss_pred cccccHHHHHhhccCCChhHhhhhhhheeccceEEEeeccccchhhhHHHHhcccceeEEEeee---eEeehHHHHHHHH
Confidence 0000111111000 1122445699999999999999999999999999 899999888 667
Q ss_pred HHHHHHc-CCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 199 KEVIKQR-ADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 199 ~~ll~~~-~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
.++++.. ...|.||+.+||-.+-++.+..+++.|. .|+.
T Consensus 187 LeFlkeEce~RgatIVYATHIFDGLe~Wpthl~yi~-~Gkl 226 (291)
T KOG2355|consen 187 LEFLKEECEQRGATIVYATHIFDGLETWPTHLVYIK-SGKL 226 (291)
T ss_pred HHHHHHHHhhcCcEEEEEeeeccchhhcchhEEEec-CCee
Confidence 7777643 4458999999999999999999999888 6654
No 399
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.73 E-value=8.3e-18 Score=140.53 Aligned_cols=74 Identities=18% Similarity=0.106 Sum_probs=63.4
Q ss_pred ccCHHHHHHHhccccCC----CCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCe
Q psy2071 157 YMTDGMLLREGMSDPML----ENYQVILLDEAHERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPL 231 (302)
Q Consensus 157 ~lS~G~~qr~~la~al~----~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~ 231 (302)
.||+||+||+++|++++ .+|+++|+|| |++++|+.. ..+.+++....+.+.+++++||+.+.+ ..+|+++.
T Consensus 94 ~LS~Ge~~r~~Laral~~~~~~~p~llilDE---p~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~~~~-~~adrvi~ 169 (178)
T cd03239 94 ILSGGEKSLSALALIFALQEIKPSPFYVLDE---IDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKKEMF-ENADKLIG 169 (178)
T ss_pred cCCHHHHHHHHHHHHHHHhcCCCCCEEEEEC---CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHH-hhCCeEEE
Confidence 39999999999999985 7999999999 999999877 667777776555578999999998876 58999998
Q ss_pred eee
Q psy2071 232 MNV 234 (302)
Q Consensus 232 l~i 234 (302)
+..
T Consensus 170 i~~ 172 (178)
T cd03239 170 VLF 172 (178)
T ss_pred EEE
Confidence 874
No 400
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.71 E-value=1.7e-18 Score=143.74 Aligned_cols=170 Identities=17% Similarity=0.180 Sum_probs=113.8
Q ss_pred hHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhccccc----CCCEEEee-----cCchhhhHHHHHH---Hhhhhh
Q psy2071 64 FEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKS----VGAKAVAC-----TQPRRVAAMSVAQ---RVSEEM 131 (302)
Q Consensus 64 ~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~----~G~~~i~~-----~~~~~~~~~~~~~---~~~~~~ 131 (302)
.++.++++.++++||+-+|+|++|||||-.-+.|||..+-. .....+.. ..|+... .-+.. .+++++
T Consensus 20 vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~RR-k~ig~~isMIFQeP 98 (330)
T COG4170 20 VKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRERR-KLVGHNVSMIFQEP 98 (330)
T ss_pred eEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHHhh-hhhccchhhhhcCc
Confidence 34678999999999999999999999999999999976421 11222222 1222110 00011 111111
Q ss_pred ------ccccc----cceeeee-------eec--------------CCC---CccccccccCHHHHHHHhccccCCCCCc
Q psy2071 132 ------DCQLG----QEVGYSI-------RFE--------------DCS---SPKTVLKYMTDGMLLREGMSDPMLENYQ 177 (302)
Q Consensus 132 ------~~~~~----~~v~~~~-------~~~--------------~~~---~~~~~~~~lS~G~~qr~~la~al~~~p~ 177 (302)
..+++ +++-... +|. ... .......+|+.|+=|+|+||.|++.+|+
T Consensus 99 ~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP~ElTeGE~QKVMIA~A~AnqPr 178 (330)
T COG4170 99 QSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPYELTEGECQKVMIAIALANQPR 178 (330)
T ss_pred hhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCcchhccCcceeeeeehhhccCCc
Confidence 11111 1111000 010 000 0122345699999999999999999999
Q ss_pred EEEEcCCCCCCcchHHHH-HHHHHHHHHcC-CCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 178 VILLDEAHERTLATDILM-GVLKEVIKQRA-DLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 178 lliLDE~~~p~~~lD~~~-~~l~~ll~~~~-~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
+||.|| ||+++++.. ..+..++...+ ..+.+|+.++||+..+.++||++.||. -|..
T Consensus 179 LLIADE---PTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~~is~W~d~i~VlY-CGQ~ 237 (330)
T COG4170 179 LLIADE---PTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWADKINVLY-CGQT 237 (330)
T ss_pred eEeccC---CCcccCccHHHHHHHHHHHhhccCCceEEEEcccHHHHHHHhhheEEEE-eccc
Confidence 999999 999999887 66777777654 458999999999999999999999998 5543
No 401
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.71 E-value=3.5e-18 Score=180.18 Aligned_cols=78 Identities=14% Similarity=0.107 Sum_probs=69.5
Q ss_pred cccccccCHHHHHHHhccccCC---CCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhcc
Q psy2071 152 KTVLKYMTDGMLLREGMSDPML---ENYQVILLDEAHERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFD 227 (302)
Q Consensus 152 ~~~~~~lS~G~~qr~~la~al~---~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d 227 (302)
+..+..||+||+||++||++|+ .+|+++|||| |++++|+.. ..+.+++....+.|.|||++||+++.+ .+||
T Consensus 804 ~q~~~tLSGGE~QRV~LAraL~~~~~~P~LLILDE---PTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~~i-~~aD 879 (1809)
T PRK00635 804 GRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDE---PTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMHVV-KVAD 879 (1809)
T ss_pred cCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEeC---CCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH-HhCC
Confidence 3455669999999999999997 6999999999 999999877 788888887766789999999999998 8999
Q ss_pred CCCeee
Q psy2071 228 NAPLMN 233 (302)
Q Consensus 228 ~~~~l~ 233 (302)
++++|.
T Consensus 880 rVi~L~ 885 (1809)
T PRK00635 880 YVLELG 885 (1809)
T ss_pred EEEEEc
Confidence 999994
No 402
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.71 E-value=1.4e-17 Score=152.12 Aligned_cols=157 Identities=18% Similarity=0.210 Sum_probs=104.3
Q ss_pred HHhCCEEEEEccCCCCccchhhhhhhcccccCCCEE-----------EeecCchh---------hhHHHHHHHh---hhh
Q psy2071 74 LAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKA-----------VACTQPRR---------VAAMSVAQRV---SEE 130 (302)
Q Consensus 74 i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~-----------i~~~~~~~---------~~~~~~~~~~---~~~ 130 (302)
..+|++++|+|+||-||||.+++++|.+.|.-|.-. +.|+.... +.+..-.|++ ...
T Consensus 97 pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~~~pp~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~QYVd~iPk~ 176 (591)
T COG1245 97 PRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQYVDLIPKV 176 (591)
T ss_pred CCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCCCCCCCHHHHHHHhhhhHHHHHHHHHHcCCcceecchHHHHHHHHH
Confidence 469999999999999999999999999999888431 11111000 0000000011 000
Q ss_pred hccccccce------e----eeeeecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHH
Q psy2071 131 MDCQLGQEV------G----YSIRFEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLK 199 (302)
Q Consensus 131 ~~~~~~~~v------~----~~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~ 199 (302)
...++++.+ | +.-++......++.+..||||++||++||.+++.+.++.++|| |++-||.-. -...
T Consensus 177 ~KG~v~elLk~~de~g~~devve~l~L~nvl~r~v~~LSGGELQr~aIaa~l~rdADvY~FDE---psSyLDi~qRl~~a 253 (591)
T COG1245 177 VKGKVGELLKKVDERGKFDEVVERLGLENVLDRDVSELSGGELQRVAIAAALLRDADVYFFDE---PSSYLDIRQRLNAA 253 (591)
T ss_pred hcchHHHHHHhhhhcCcHHHHHHHhcchhhhhhhhhhcCchHHHHHHHHHHHhccCCEEEEcC---CcccccHHHHHHHH
Confidence 001111100 0 0001111112355678899999999999999999999999999 999999766 3355
Q ss_pred HHHHHcCCCcEEEEEEecCHHHHHhhccCCCeee
Q psy2071 200 EVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMN 233 (302)
Q Consensus 200 ~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~ 233 (302)
++++.+.+.+..||++.||+..+.-++|-+.++.
T Consensus 254 r~Irel~~~~k~ViVVEHDLavLD~lsD~vhI~Y 287 (591)
T COG1245 254 RVIRELAEDGKYVIVVEHDLAVLDYLSDFVHILY 287 (591)
T ss_pred HHHHHHhccCCeEEEEechHHHHHHhhheeEEEe
Confidence 6666655557899999999999999999887775
No 403
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.70 E-value=3.2e-18 Score=173.38 Aligned_cols=78 Identities=14% Similarity=0.090 Sum_probs=68.9
Q ss_pred cccccccCHHHHHHHhccccCCCCC---cEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhcc
Q psy2071 152 KTVLKYMTDGMLLREGMSDPMLENY---QVILLDEAHERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFD 227 (302)
Q Consensus 152 ~~~~~~lS~G~~qr~~la~al~~~p---~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d 227 (302)
+.....||+||+||+.||++|+.+| +++|||| |+.++|+.. ..+.+++.++.+.|.|||++||+++.+. .||
T Consensus 825 ~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDE---PtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~~i~-~aD 900 (943)
T PRK00349 825 GQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDE---PTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLDVIK-TAD 900 (943)
T ss_pred cCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEEC---CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH-hCC
Confidence 3455679999999999999999999 9999999 999999877 7788888877666889999999999885 799
Q ss_pred CCCeee
Q psy2071 228 NAPLMN 233 (302)
Q Consensus 228 ~~~~l~ 233 (302)
+++.|.
T Consensus 901 ~ii~Lg 906 (943)
T PRK00349 901 WIIDLG 906 (943)
T ss_pred EEEEec
Confidence 999995
No 404
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.70 E-value=1.2e-17 Score=137.54 Aligned_cols=130 Identities=14% Similarity=0.092 Sum_probs=88.2
Q ss_pred HhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhhccccc-cceeeeeeecCCCCccc
Q psy2071 75 AQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLG-QEVGYSIRFEDCSSPKT 153 (302)
Q Consensus 75 ~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~ 153 (302)
.++.+++|+|||||||||++++++...-...|..... .+. + .+..+. .++.+ -.
T Consensus 19 ~~~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~-~~~-~-------------~g~~~~~~~~~~----------i~ 73 (162)
T cd03227 19 GEGSLTIITGPNGSGKSTILDAIGLALGGAQSATRRR-SGV-K-------------AGCIVAAVSAEL----------IF 73 (162)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHhcchhhhcc-Ccc-c-------------CCCcceeeEEEE----------eh
Confidence 3456999999999999999999876655444322210 000 0 000000 00000 00
Q ss_pred cccccCHHHHHHHhccccCCC----CCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccC
Q psy2071 154 VLKYMTDGMLLREGMSDPMLE----NYQVILLDEAHERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDN 228 (302)
Q Consensus 154 ~~~~lS~G~~qr~~la~al~~----~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~ 228 (302)
....+|+||++|++++++|+. +|+++|+|| |+.++|+.. ..+.+.+.+....+.+++++||+.+.+. ++|+
T Consensus 74 ~~~~lS~G~~~~~~la~~L~~~~~~~~~llllDE---p~~gld~~~~~~l~~~l~~~~~~~~~vii~TH~~~~~~-~~d~ 149 (162)
T cd03227 74 TRLQLSGGEKELSALALILALASLKPRPLYILDE---IDRGLDPRDGQALAEAILEHLVKGAQVIVITHLPELAE-LADK 149 (162)
T ss_pred heeeccccHHHHHHHHHHHHhcCCCCCCEEEEeC---CCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHH-hhhh
Confidence 112399999999999999976 789999999 999999877 5555555543222789999999999875 6899
Q ss_pred CCeee
Q psy2071 229 APLMN 233 (302)
Q Consensus 229 ~~~l~ 233 (302)
+..|.
T Consensus 150 ~~~l~ 154 (162)
T cd03227 150 LIHIK 154 (162)
T ss_pred EEEEE
Confidence 88887
No 405
>KOG0062|consensus
Probab=99.69 E-value=1.4e-17 Score=154.06 Aligned_cols=169 Identities=17% Similarity=0.140 Sum_probs=116.9
Q ss_pred HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHH----HHHHHh-------hhhhcc
Q psy2071 65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAM----SVAQRV-------SEEMDC 133 (302)
Q Consensus 65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~----~~~~~~-------~~~~~~ 133 (302)
.++.+++..++.-.-++++|+||+||||+++++.+...|..|.+.+.....-...+. .....+ ...++.
T Consensus 378 ~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~r~ri~~f~Qhhvd~l~~~v~~vd~~~~~~pG~ 457 (582)
T KOG0062|consen 378 QWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHPRLRIKYFAQHHVDFLDKNVNAVDFMEKSFPGK 457 (582)
T ss_pred hhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecccceecchhHhhhhHHHHHhHHHHHHHHhCCCC
Confidence 577888888888899999999999999999999999999999776654321100000 000000 001111
Q ss_pred ccccceeeeeeecCCC--CccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcE
Q psy2071 134 QLGQEVGYSIRFEDCS--SPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVIKQRADLKL 210 (302)
Q Consensus 134 ~~~~~v~~~~~~~~~~--~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~ 210 (302)
..+.+...+...+.. .....+..|||||+-||++|.....+|.+|+||| ||+.||.-. +.|.+.++... -
T Consensus 458 -~~ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrvafA~~~~~~PhlLVLDE---PTNhLD~dsl~AL~~Al~~F~---G 530 (582)
T KOG0062|consen 458 -TEEEIRRHLGSFGLSGELALQSIASLSGGQKSRVAFAACTWNNPHLLVLDE---PTNHLDRDSLGALAKALKNFN---G 530 (582)
T ss_pred -CHHHHHHHHHhcCCCchhhhccccccCCcchhHHHHHHHhcCCCcEEEecC---CCccccHHHHHHHHHHHHhcC---C
Confidence 111111111011111 1222378899999999999999999999999999 999999654 66666665543 3
Q ss_pred EEEEEecCHHHHHhhccCCCeeeecCcCCcc
Q psy2071 211 VIMSATLDAGKFQQYFDNAPLMNVPGRTHPV 241 (302)
Q Consensus 211 ~ii~~thd~~~~~~~~d~~~~l~i~g~~~~~ 241 (302)
-|+++|||.+++...|+.++++. .|++.|.
T Consensus 531 GVv~VSHd~~fi~~~c~E~Wvve-~g~vt~i 560 (582)
T KOG0062|consen 531 GVVLVSHDEEFISSLCKELWVVE-DGKVTPI 560 (582)
T ss_pred cEEEEECcHHHHhhcCceeEEEc-CCcEEee
Confidence 45666999999999999999999 8887774
No 406
>KOG0060|consensus
Probab=99.68 E-value=2e-17 Score=154.92 Aligned_cols=162 Identities=15% Similarity=0.186 Sum_probs=110.7
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhhccccccceeeeeee
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRF 145 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 145 (302)
+.+++++.|.+|+.+.|.||||||||+|++.+.|+.+...|.+..-...-. -....+.|+... ...+.++++-|+..-
T Consensus 450 lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~-~~lfflPQrPYm-t~GTLRdQvIYP~~~ 527 (659)
T KOG0060|consen 450 LIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGP-KDLFFLPQRPYM-TLGTLRDQVIYPLKA 527 (659)
T ss_pred eeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCCC-CceEEecCCCCc-cccchhheeeccCcc
Confidence 357799999999999999999999999999999999988886654321100 001111111111 112444555555311
Q ss_pred -----------------------------cCCC--CccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHH
Q psy2071 146 -----------------------------EDCS--SPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDIL 194 (302)
Q Consensus 146 -----------------------------~~~~--~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~ 194 (302)
++.. ....-.+.||+|++||+++||-+.++|++-|||| -|+++|..
T Consensus 528 ~~~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLfy~kPk~AiLDE---~TSAv~~d 604 (659)
T KOG0060|consen 528 EDMDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLFYHKPKFAILDE---CTSAVTED 604 (659)
T ss_pred ccccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHHHHHhcCCceEEeec---hhhhccHH
Confidence 1111 1112335599999999999999999999999999 89999977
Q ss_pred H-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 195 M-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 195 ~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
+ ..+.+.+++ .|+|.++++|--..+. +-| .++++.|++
T Consensus 605 vE~~~Yr~~r~---~giT~iSVgHRkSL~k-fHd--~~L~~~g~g 643 (659)
T KOG0060|consen 605 VEGALYRKCRE---MGITFISVGHRKSLWK-FHD--YVLRMDGRG 643 (659)
T ss_pred HHHHHHHHHHH---cCCeEEEeccHHHHHh-hhh--EEEEecCCC
Confidence 7 667766554 4999999999876554 444 445556654
No 407
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.67 E-value=2.1e-17 Score=167.14 Aligned_cols=78 Identities=14% Similarity=0.097 Sum_probs=68.6
Q ss_pred cccccccCHHHHHHHhccccCCC---CCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhcc
Q psy2071 152 KTVLKYMTDGMLLREGMSDPMLE---NYQVILLDEAHERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFD 227 (302)
Q Consensus 152 ~~~~~~lS~G~~qr~~la~al~~---~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d 227 (302)
++....||+||+||+.||++|+. +|+++|||| |++++|+.. ..+.+++.++.+.|.|||++||+++.+. .||
T Consensus 823 ~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDE---PtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~~i~-~aD 898 (924)
T TIGR00630 823 GQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDE---PTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLDVIK-TAD 898 (924)
T ss_pred cCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEEC---CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH-hCC
Confidence 34567799999999999999997 599999999 999999887 7788888877666899999999999885 799
Q ss_pred CCCeee
Q psy2071 228 NAPLMN 233 (302)
Q Consensus 228 ~~~~l~ 233 (302)
++++|.
T Consensus 899 ~ii~Lg 904 (924)
T TIGR00630 899 YIIDLG 904 (924)
T ss_pred EEEEec
Confidence 999995
No 408
>KOG0066|consensus
Probab=99.67 E-value=2.4e-17 Score=149.90 Aligned_cols=149 Identities=19% Similarity=0.184 Sum_probs=97.9
Q ss_pred HHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEee--------cCch-h----hhHHHHHHHhhhhhcc
Q psy2071 67 RTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVAC--------TQPR-R----VAAMSVAQRVSEEMDC 133 (302)
Q Consensus 67 ~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~--------~~~~-~----~~~~~~~~~~~~~~~~ 133 (302)
...+.|-|.--..++|+||||.||||||+++.|.+.|..|+..-+. +... . .......++.+..+..
T Consensus 603 FkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnhrL~iG~FdQh~~E~L~~Eetp~EyLqr~FNlpyq 682 (807)
T KOG0066|consen 603 FKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNHRLRIGWFDQHANEALNGEETPVEYLQRKFNLPYQ 682 (807)
T ss_pred hhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhccceeeeechhhhhHHhhccccCHHHHHHHhcCCChH
Confidence 4666777777788999999999999999999999999999543211 1100 0 0011111111111111
Q ss_pred ccccceeeeeeecCCCCcc-ccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEE
Q psy2071 134 QLGQEVGYSIRFEDCSSPK-TVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVIKQRADLKLV 211 (302)
Q Consensus 134 ~~~~~v~~~~~~~~~~~~~-~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ 211 (302)
..+..+| +|....... -.+..|||||+-||++|---+..|++||||| ||.++|+.. ..+.+.++.+. -.
T Consensus 683 ~ARK~LG---~fGL~sHAHTikikdLSGGQKaRValaeLal~~PDvlILDE---PTNNLDIESIDALaEAIney~---Gg 753 (807)
T KOG0066|consen 683 EARKQLG---TFGLASHAHTIKIKDLSGGQKARVALAELALGGPDVLILDE---PTNNLDIESIDALAEAINEYN---GG 753 (807)
T ss_pred HHHHHhh---hhhhhhccceEeeeecCCcchHHHHHHHHhcCCCCEEEecC---CCCCcchhhHHHHHHHHHhcc---Cc
Confidence 1111111 111111222 2567899999999999999999999999999 999999776 77778777663 35
Q ss_pred EEEEecCHHHHHh
Q psy2071 212 IMSATLDAGKFQQ 224 (302)
Q Consensus 212 ii~~thd~~~~~~ 224 (302)
||++|||...+.+
T Consensus 754 Vi~VsHDeRLi~e 766 (807)
T KOG0066|consen 754 VIMVSHDERLIVE 766 (807)
T ss_pred EEEEecccceeee
Confidence 6667999766544
No 409
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.66 E-value=1.4e-16 Score=136.90 Aligned_cols=78 Identities=12% Similarity=-0.032 Sum_probs=62.4
Q ss_pred cccccccCHHHHHHHhcc----ccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCC-c-EEEEEEecCHHHHHh
Q psy2071 152 KTVLKYMTDGMLLREGMS----DPMLENYQVILLDEAHERTLATDILM-GVLKEVIKQRADL-K-LVIMSATLDAGKFQQ 224 (302)
Q Consensus 152 ~~~~~~lS~G~~qr~~la----~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~-~-~~ii~~thd~~~~~~ 224 (302)
...+..||+||+|++.++ ++++.+|+++|+|| |+.++|+.. ..+.+++....+. + .+++++||++....+
T Consensus 121 ~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDE---P~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~~~~~ 197 (213)
T cd03277 121 ELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDE---INQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLLPGLN 197 (213)
T ss_pred ccchhhccccHHHHHHHHHHHHHHhccCCCEEEEec---ccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhccCCc
Confidence 345678999999998765 44578999999999 999999887 7777877765443 4 579999999999989
Q ss_pred hccCCCee
Q psy2071 225 YFDNAPLM 232 (302)
Q Consensus 225 ~~d~~~~l 232 (302)
++|++.++
T Consensus 198 ~~~~~~v~ 205 (213)
T cd03277 198 YHEKMTVL 205 (213)
T ss_pred ccCceEEE
Confidence 99876443
No 410
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.66 E-value=1.7e-16 Score=135.41 Aligned_cols=139 Identities=12% Similarity=0.033 Sum_probs=88.0
Q ss_pred HHHHHhCCEEEEEccCCCCccchhhhhhhcc-cccCCCEEEeecCchhhhHHHHHHHhhhhhccccccceeeeeeecCCC
Q psy2071 71 MTLLAQNQCIVLVGETGSGKTTQIPQWCVEY-SKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRFEDCS 149 (302)
Q Consensus 71 ~~~i~~g~i~~liG~nGsGKSTll~~i~g~~-~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 149 (302)
+..+..|++++|+|||||||||+++++++.. ....|... .+.. ......+.+... +....
T Consensus 23 ~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~-~~~~----------------~~i~~~dqi~~~--~~~~d 83 (202)
T cd03243 23 DINLGSGRLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFV-PAES----------------ASIPLVDRIFTR--IGAED 83 (202)
T ss_pred eEEEcCCeEEEEECCCCCccHHHHHHHHHHHHHHHcCCCc-cccc----------------cccCCcCEEEEE--ecCcc
Confidence 3455688999999999999999999998543 22333211 0000 000001111111 22222
Q ss_pred CccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-H-HHHHHHHHcCCCcEEEEEEecCHHHHHhhcc
Q psy2071 150 SPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-G-VLKEVIKQRADLKLVIMSATLDAGKFQQYFD 227 (302)
Q Consensus 150 ~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~-~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d 227 (302)
........++.+++| +..+.+++.+|+++|+|| |+.++|+.. . .+..+++...+.+.++|++||+.+.+. .++
T Consensus 84 ~i~~~~s~~~~e~~~-l~~i~~~~~~~~llllDE---p~~gld~~~~~~l~~~ll~~l~~~~~~vi~~tH~~~~~~-~~~ 158 (202)
T cd03243 84 SISDGRSTFMAELLE-LKEILSLATPRSLVLIDE---LGRGTSTAEGLAIAYAVLEHLLEKGCRTLFATHFHELAD-LPE 158 (202)
T ss_pred cccCCceeHHHHHHH-HHHHHHhccCCeEEEEec---CCCCCCHHHHHHHHHHHHHHHHhcCCeEEEECChHHHHH-Hhh
Confidence 223344567777766 555567788999999999 999999875 3 345556655555789999999976654 677
Q ss_pred CCCeee
Q psy2071 228 NAPLMN 233 (302)
Q Consensus 228 ~~~~l~ 233 (302)
++..+.
T Consensus 159 ~~~~l~ 164 (202)
T cd03243 159 QVPGVK 164 (202)
T ss_pred cCCCeE
Confidence 776665
No 411
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.65 E-value=8.2e-17 Score=148.77 Aligned_cols=171 Identities=12% Similarity=0.154 Sum_probs=129.8
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCc-hhhhHHHHH----HHhhh-------hhcc
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQP-RRVAAMSVA----QRVSE-------EMDC 133 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~-~~~~~~~~~----~~~~~-------~~~~ 133 (302)
.++++++.+.+|||++|.|-.|-|-+.|+..|+|+.++.+|.+.+.|.+. .+....... .++.. .+..
T Consensus 273 ~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r~~G~~~VPedR~~~Glv~~~ 352 (501)
T COG3845 273 AVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLDL 352 (501)
T ss_pred eeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHHHhcCCccCChhhccCccccCc
Confidence 46789999999999999999999999999999999988889999999774 111111100 11111 1222
Q ss_pred ccccceeeee--------------------------eecCC-CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCC
Q psy2071 134 QLGQEVGYSI--------------------------RFEDC-SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHE 186 (302)
Q Consensus 134 ~~~~~v~~~~--------------------------~~~~~-~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~ 186 (302)
++.+|+.... +|+.. .....+...||||.+||+.+||-|..+|++||+.+
T Consensus 353 sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~LSGGNqQK~IlaREl~~~p~lLI~~q--- 429 (501)
T COG3845 353 SLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGNQQKLILARELARRPDLLIAAQ--- 429 (501)
T ss_pred cHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcchhhcCCcceehhhhhhhhccCCCEEEEcC---
Confidence 3333322110 11111 13345567799999999999999999999999999
Q ss_pred CCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcCCc
Q psy2071 187 RTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRTHP 240 (302)
Q Consensus 187 p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~~~ 240 (302)
||.|+|... +.+.+.+...++.|..|+.+|-|++++..+||++.+|+ .|+...
T Consensus 430 PTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLDEil~lsDrIaVi~-~Gri~~ 483 (501)
T COG3845 430 PTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIY-EGRIVG 483 (501)
T ss_pred CCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHHHHHHhhheeeeee-CCceec
Confidence 999999877 77777777777779999999999999999999999999 887643
No 412
>KOG0065|consensus
Probab=99.65 E-value=1.5e-17 Score=168.30 Aligned_cols=171 Identities=15% Similarity=0.183 Sum_probs=122.7
Q ss_pred hHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhccc--ccCCCEEEeecCchhhhHHHHHHHhh----hhhcccccc
Q psy2071 64 FEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYS--KSVGAKAVACTQPRRVAAMSVAQRVS----EEMDCQLGQ 137 (302)
Q Consensus 64 ~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~--~~~G~~~i~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 137 (302)
.+++++++=.+.+|-.++|+|+|||||||||+.|+|-.. ..+|++.|+|.+...........++. .....++++
T Consensus 804 ~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~TVrE 883 (1391)
T KOG0065|consen 804 RQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFARVSGYVEQQDIHSPELTVRE 883 (1391)
T ss_pred eEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhccccceeecccccCcccchHH
Confidence 457889999999999999999999999999999998532 23478899887543221111111111 123345555
Q ss_pred ceeeeeeec--CCC--------------------Cccccccc----cCHHHHHHHhccccCCCCC-cEEEEcCCCCCCcc
Q psy2071 138 EVGYSIRFE--DCS--------------------SPKTVLKY----MTDGMLLREGMSDPMLENY-QVILLDEAHERTLA 190 (302)
Q Consensus 138 ~v~~~~~~~--~~~--------------------~~~~~~~~----lS~G~~qr~~la~al~~~p-~lliLDE~~~p~~~ 190 (302)
.+.|...+. ... ..+..+.. ||.+||+|+.||--|+.+| .+|+||| ||+|
T Consensus 884 SL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVELvA~P~~ilFLDE---PTSG 960 (1391)
T KOG0065|consen 884 SLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVELVANPSSILFLDE---PTSG 960 (1391)
T ss_pred HHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEEEecCCceeEEecC---CCCC
Confidence 554433221 111 11222233 9999999999999999999 8999999 9999
Q ss_pred hHHHH-HHHHHHHHHcCCCcEEEEEEecCH-HHHHhhccCCCeeeecCc
Q psy2071 191 TDILM-GVLKEVIKQRADLKLVIMSATLDA-GKFQQYFDNAPLMNVPGR 237 (302)
Q Consensus 191 lD~~~-~~l~~ll~~~~~~~~~ii~~thd~-~~~~~~~d~~~~l~i~g~ 237 (302)
||... ..+.+++++..+.|.||+-+-|.. -.+.+.||++.+|+--|+
T Consensus 961 LDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGq 1009 (1391)
T KOG0065|consen 961 LDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQ 1009 (1391)
T ss_pred ccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCe
Confidence 99766 678888888888899999888866 457788999999984444
No 413
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.64 E-value=6.5e-16 Score=138.07 Aligned_cols=78 Identities=14% Similarity=0.067 Sum_probs=64.0
Q ss_pred ccccCHHHHHHHhccccCCC----CCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCC
Q psy2071 155 LKYMTDGMLLREGMSDPMLE----NYQVILLDEAHERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNA 229 (302)
Q Consensus 155 ~~~lS~G~~qr~~la~al~~----~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~ 229 (302)
...||+||+||+++|++++. +|+++|+|| |+.++|+.. ..+.+++..... +.+++++||+.+. ..+||++
T Consensus 168 ~~~lS~G~~~r~~la~~~~~~~~~~p~vlllDE---p~~~Ld~~~~~~l~~~l~~~~~-~~tii~isH~~~~-~~~~d~~ 242 (276)
T cd03241 168 AKIASGGELSRLMLALKAILARKDAVPTLIFDE---IDTGISGEVAQAVGKKLKELSR-SHQVLCITHLPQV-AAMADNH 242 (276)
T ss_pred hhhcChhHHHHHHHHHHHHHhcCCCCCEEEEEC---CccCCCHHHHHHHHHHHHHHhC-CCEEEEEechHHH-HHhcCcE
Confidence 34599999999999986543 999999999 999999877 677777776544 6799999999985 5799999
Q ss_pred CeeeecCc
Q psy2071 230 PLMNVPGR 237 (302)
Q Consensus 230 ~~l~i~g~ 237 (302)
++|.-.+.
T Consensus 243 ~~l~~~~~ 250 (276)
T cd03241 243 FLVEKEVE 250 (276)
T ss_pred EEEEEecC
Confidence 98884443
No 414
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.64 E-value=2.5e-16 Score=136.10 Aligned_cols=138 Identities=19% Similarity=0.160 Sum_probs=90.9
Q ss_pred HHHHHHHHHhCCEEEEEccCCCCccchhhhhhhccc-ccCCCEEEeecCchhhhHHHHHHHhhh-hhccccccceeeeee
Q psy2071 67 RTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYS-KSVGAKAVACTQPRRVAAMSVAQRVSE-EMDCQLGQEVGYSIR 144 (302)
Q Consensus 67 ~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~-~~~G~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~ 144 (302)
.+++++.+.++++++|.||||+||||++++++-..- ...|. .+.. .......+.+. .+
T Consensus 20 ~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~la~~g~------------------~vpa~~~~~~~~~~il--~~ 79 (222)
T cd03285 20 PNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGVIVLMAQIGC------------------FVPCDSADIPIVDCIL--AR 79 (222)
T ss_pred EeeEEEeecCCeEEEEECCCCCChHHHHHHHHHHHHHHHhCC------------------CcCcccEEEeccceeE--ee
Confidence 466677778899999999999999999999863200 00010 0000 00000111111 11
Q ss_pred ecCCCCccccccccCHHHHHHHhccccC--CCCCcEEEEcCCCCC---CcchHHHHH--HHHHHHHHcCCCcEEEEEEec
Q psy2071 145 FEDCSSPKTVLKYMTDGMLLREGMSDPM--LENYQVILLDEAHER---TLATDILMG--VLKEVIKQRADLKLVIMSATL 217 (302)
Q Consensus 145 ~~~~~~~~~~~~~lS~G~~qr~~la~al--~~~p~lliLDE~~~p---~~~lD~~~~--~l~~ll~~~~~~~~~ii~~th 217 (302)
+. ..+.....+|.|++++..+++++ +.+|+++|||| | |+++|.... .+.+.+.. +.+.+++++||
T Consensus 80 ~~---l~d~~~~~lS~~~~e~~~~a~il~~~~~~sLvLLDE---p~~gT~~lD~~~~~~~il~~l~~--~~~~~vlisTH 151 (222)
T cd03285 80 VG---ASDSQLKGVSTFMAEMLETAAILKSATENSLIIIDE---LGRGTSTYDGFGLAWAIAEYIAT--QIKCFCLFATH 151 (222)
T ss_pred ec---cccchhcCcChHHHHHHHHHHHHHhCCCCeEEEEec---CcCCCChHHHHHHHHHHHHHHHh--cCCCeEEEEec
Confidence 11 12234677999999999999988 89999999999 8 888997652 22222222 34678999999
Q ss_pred CHHHHHhhccCCCeee
Q psy2071 218 DAGKFQQYFDNAPLMN 233 (302)
Q Consensus 218 d~~~~~~~~d~~~~l~ 233 (302)
+ .++.++||++..++
T Consensus 152 ~-~el~~~~~~~~~i~ 166 (222)
T cd03285 152 F-HELTALADEVPNVK 166 (222)
T ss_pred h-HHHHHHhhcCCCeE
Confidence 5 77889999998876
No 415
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.64 E-value=6.5e-17 Score=146.26 Aligned_cols=163 Identities=17% Similarity=0.205 Sum_probs=111.2
Q ss_pred hHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhc--------ccccCCCEEEeecCch---------hhhHHHHHHH
Q psy2071 64 FEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVE--------YSKSVGAKAVACTQPR---------RVAAMSVAQR 126 (302)
Q Consensus 64 ~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~--------~~~~~G~~~i~~~~~~---------~~~~~~~~~~ 126 (302)
+-.++++++.+++|++++|+|++||||||+++++.|. +.|++|.+.+--.... ......+...
T Consensus 396 ryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~~a~iPge~Ep~f~~~tileh 475 (593)
T COG2401 396 RYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVSALIPGEYEPEFGEVTILEH 475 (593)
T ss_pred eeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccchhhccCcccccccCchhHHHH
Confidence 3357899999999999999999999999999999884 5688887765321100 0000011111
Q ss_pred hhhhhcccccc---ceeeeee--ecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH--HHHH
Q psy2071 127 VSEEMDCQLGQ---EVGYSIR--FEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM--GVLK 199 (302)
Q Consensus 127 ~~~~~~~~~~~---~v~~~~~--~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~--~~l~ 199 (302)
+ ....++ .++..-+ ..+..........||.||+.|..||.+++..|.+++.|| -.+.+|++. .+.+
T Consensus 476 l----~s~tGD~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iDE---F~AhLD~~TA~rVAr 548 (593)
T COG2401 476 L----RSKTGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDE---FAAHLDELTAVRVAR 548 (593)
T ss_pred H----hhccCchhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhh---hhhhcCHHHHHHHHH
Confidence 1 111111 1111111 111112234567899999999999999999999999999 667788766 4555
Q ss_pred HHHHHcCCCcEEEEEEecCHHHHHhh-ccCCCeee
Q psy2071 200 EVIKQRADLKLVIMSATLDAGKFQQY-FDNAPLMN 233 (302)
Q Consensus 200 ~ll~~~~~~~~~ii~~thd~~~~~~~-~d~~~~l~ 233 (302)
++-+..++.|+|++.+||..+....+ -|.++.+.
T Consensus 549 kiselaRe~giTlivvThrpEv~~AL~PD~li~vg 583 (593)
T COG2401 549 KISELAREAGITLIVVTHRPEVGNALRPDTLILVG 583 (593)
T ss_pred HHHHHHHHhCCeEEEEecCHHHHhccCCceeEEee
Confidence 55555556799999999999999888 56666655
No 416
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.63 E-value=2.2e-16 Score=134.64 Aligned_cols=139 Identities=14% Similarity=0.077 Sum_probs=95.0
Q ss_pred HHHHHHHHHhCCEEEEEccCCCCccchhhhhhhccccc-CCCEEEeecCchhhhHHHHHHHhhhhhccccccceeeeeee
Q psy2071 67 RTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKS-VGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRF 145 (302)
Q Consensus 67 ~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~-~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 145 (302)
.+++++.+.+|++++|+|||||||||++++++++.--. .|. .+ | +.....++.+++...+
T Consensus 19 ~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~la~~G~-~v----p------------a~~~~l~~~d~I~~~~-- 79 (204)
T cd03282 19 PNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLAIMAQIGC-FV----P------------AEYATLPIFNRLLSRL-- 79 (204)
T ss_pred EeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHHHHHHcCC-Cc----c------------hhhcCccChhheeEec--
Confidence 56778888899999999999999999999998764211 110 00 1 1112223334443332
Q ss_pred cCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH--HHHHHHHHHcCCCcEEEEEEecCHHHHH
Q psy2071 146 EDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM--GVLKEVIKQRADLKLVIMSATLDAGKFQ 223 (302)
Q Consensus 146 ~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~--~~l~~ll~~~~~~~~~ii~~thd~~~~~ 223 (302)
............+|.||++.. .+.+++.+|+++|||| |+.++|+.. .....+++...+.+.+++++||+.+.+.
T Consensus 80 ~~~d~~~~~~S~fs~e~~~~~-~il~~~~~~~lvllDE---~~~gt~~~~~~~l~~~il~~l~~~~~~~i~~TH~~~l~~ 155 (204)
T cd03282 80 SNDDSMERNLSTFASEMSETA-YILDYADGDSLVLIDE---LGRGTSSADGFAISLAILECLIKKESTVFFATHFRDIAA 155 (204)
T ss_pred CCccccchhhhHHHHHHHHHH-HHHHhcCCCcEEEecc---ccCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHHHH
Confidence 222234456678999999764 4555789999999999 999998754 3445556655555889999999999888
Q ss_pred hhccC
Q psy2071 224 QYFDN 228 (302)
Q Consensus 224 ~~~d~ 228 (302)
..++.
T Consensus 156 ~~~~~ 160 (204)
T cd03282 156 ILGNK 160 (204)
T ss_pred HhhcC
Confidence 66643
No 417
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.62 E-value=5.1e-16 Score=132.03 Aligned_cols=137 Identities=17% Similarity=0.061 Sum_probs=78.3
Q ss_pred HHHhCCEEEEEccCCCCccchhhhhhhccccc-CCCEEEeecCchhhhHHHHHHHhhhhhccccccceeeeeeecCCCCc
Q psy2071 73 LLAQNQCIVLVGETGSGKTTQIPQWCVEYSKS-VGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRFEDCSSP 151 (302)
Q Consensus 73 ~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~-~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 151 (302)
.+..|++++|+||||||||||+++|+|..... .|. .+.+. ... .+........++.+++.....
T Consensus 21 ~l~~g~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~-~v~a~-----~~~--~q~~~l~~~~~~~d~l~~~~s------- 85 (199)
T cd03283 21 DMEKKNGILITGSNMSGKSTFLRTIGVNVILAQAGA-PVCAS-----SFE--LPPVKIFTSIRVSDDLRDGIS------- 85 (199)
T ss_pred EEcCCcEEEEECCCCCChHHHHHHHHHHHHHHHcCC-EEecC-----ccC--cccceEEEeccchhccccccC-------
Confidence 34558999999999999999999998865321 221 11110 000 000000111122222211110
Q ss_pred cccccccCHHHHHHHhccccCC--CCCcEEEEcCCCCCCcchHHHH-H-HHHHHHHHcCCCcEEEEEEecCHHHHHhh--
Q psy2071 152 KTVLKYMTDGMLLREGMSDPML--ENYQVILLDEAHERTLATDILM-G-VLKEVIKQRADLKLVIMSATLDAGKFQQY-- 225 (302)
Q Consensus 152 ~~~~~~lS~G~~qr~~la~al~--~~p~lliLDE~~~p~~~lD~~~-~-~l~~ll~~~~~~~~~ii~~thd~~~~~~~-- 225 (302)
....+..|+.-+...+ .+|+++|+|| |+.++|+.. . ....+++...+.+.++|++||+.+.+...
T Consensus 86 ------~~~~e~~~~~~iL~~~~~~~p~llllDE---p~~glD~~~~~~l~~~ll~~l~~~~~tiiivTH~~~~~~~~~~ 156 (199)
T cd03283 86 ------YFYAELRRLKEIVEKAKKGEPVLFLLDE---IFKGTNSRERQAASAAVLKFLKNKNTIGIISTHDLELADLLDL 156 (199)
T ss_pred ------hHHHHHHHHHHHHHhccCCCCeEEEEec---ccCCCCHHHHHHHHHHHHHHHHHCCCEEEEEcCcHHHHHhhhc
Confidence 0112223333333333 4999999999 999999776 3 33456665555588999999999988765
Q ss_pred ccCCCeee
Q psy2071 226 FDNAPLMN 233 (302)
Q Consensus 226 ~d~~~~l~ 233 (302)
.+++..++
T Consensus 157 ~~~v~~~~ 164 (199)
T cd03283 157 DSAVRNYH 164 (199)
T ss_pred CCCeEEEE
Confidence 34444433
No 418
>KOG0064|consensus
Probab=99.59 E-value=1.1e-16 Score=148.32 Aligned_cols=147 Identities=18% Similarity=0.217 Sum_probs=99.1
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhhccccccceeeeeee
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRF 145 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 145 (302)
+....++.|++|-.+.|+||||||||+|++++.|+.+...|...+-- +.++-.+.+..++. ..+.+++|-|+...
T Consensus 497 vv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P~--~~~mFYIPQRPYms---~gtlRDQIIYPdS~ 571 (728)
T KOG0064|consen 497 LVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIPR--PNNIFYIPQRPYMS---GGTLRDQIIYPDSS 571 (728)
T ss_pred eecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCeeecCC--CcceEeccCCCccC---cCcccceeecCCcH
Confidence 35778999999999999999999999999999999987666443211 11111111111111 22334444443211
Q ss_pred c----------------------------C-CCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-
Q psy2071 146 E----------------------------D-CSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM- 195 (302)
Q Consensus 146 ~----------------------------~-~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~- 195 (302)
+ . ......--+.||||++||+++||.+-++|+..+||| -|++..+-+
T Consensus 572 e~~~~kg~~d~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~yHrPkyalLDE---cTsAvsidvE 648 (728)
T KOG0064|consen 572 EQMKRKGYTDQDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMFYHRPKYALLDE---CTSAVSIDVE 648 (728)
T ss_pred HHHHhcCCCHHHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHHHHHHhcCcchhhhhh---hhcccccchH
Confidence 0 0 001111224599999999999999999999999999 677776555
Q ss_pred HHHHHHHHHcCCCcEEEEEEecCHHHHH
Q psy2071 196 GVLKEVIKQRADLKLVIMSATLDAGKFQ 223 (302)
Q Consensus 196 ~~l~~ll~~~~~~~~~ii~~thd~~~~~ 223 (302)
+.+.+..+ +.|++++++||....|.
T Consensus 649 ~~i~~~ak---~~gi~llsithrpslwk 673 (728)
T KOG0064|consen 649 GKIFQAAK---DAGISLLSITHRPSLWK 673 (728)
T ss_pred HHHHHHHH---hcCceEEEeecCccHHH
Confidence 55555543 45999999999988775
No 419
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=99.51 E-value=3.1e-14 Score=119.82 Aligned_cols=126 Identities=15% Similarity=0.138 Sum_probs=79.1
Q ss_pred EEEEEccCCCCccchhhhhhh-cccccCCCEEEeecCchhhhHHHHHHHhhhhhccccccceeeeeeecCCCCccccccc
Q psy2071 79 CIVLVGETGSGKTTQIPQWCV-EYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRFEDCSSPKTVLKY 157 (302)
Q Consensus 79 i~~liG~nGsGKSTll~~i~g-~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 157 (302)
+++|+||||+||||++++++. .+....|.... +.. ......+.+- ..+............
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~~~~la~~G~~v~-a~~----------------~~~~~~d~il--~~~~~~d~~~~~~s~ 61 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGLIVIMAQIGSFVP-AES----------------AELPVFDRIF--TRIGASDSLAQGLST 61 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHHHhCCCee-ehh----------------eEecccceEE--EEeCCCCchhccccH
Confidence 468999999999999999973 33333343211 100 0001111111 122222334455677
Q ss_pred cCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH--HHHHHHHHHcCC-CcEEEEEEecCHHHHHhhccC
Q psy2071 158 MTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM--GVLKEVIKQRAD-LKLVIMSATLDAGKFQQYFDN 228 (302)
Q Consensus 158 lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~--~~l~~ll~~~~~-~~~~ii~~thd~~~~~~~~d~ 228 (302)
+|+|+++...+.. .+.+|+++|+|| |+.++|+.. ..+..+++...+ .+.+++++||+.+ +.++++.
T Consensus 62 fs~~~~~l~~~l~-~~~~~~llllDE---p~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~-l~~~~~~ 130 (185)
T smart00534 62 FMVEMKETANILK-NATENSLVLLDE---LGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHE-LTKLADE 130 (185)
T ss_pred HHHHHHHHHHHHH-hCCCCeEEEEec---CCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHH-HHHHhhc
Confidence 8888887544443 356999999999 999999874 445566665444 3788999999995 6678875
No 420
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=99.50 E-value=3.7e-14 Score=125.60 Aligned_cols=129 Identities=18% Similarity=0.224 Sum_probs=78.0
Q ss_pred CEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhh-HHHHHHHhhhhhccccccceeeeeeecCCCCcccccc
Q psy2071 78 QCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVA-AMSVAQRVSEEMDCQLGQEVGYSIRFEDCSSPKTVLK 156 (302)
Q Consensus 78 ~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 156 (302)
..++|+||||||||||++.++|++.|+.|++.+.|.....+. ....+..+...+. ..++ .+. +...
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q----~~~~--~r~-------~v~~ 178 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQ----HDVG--IRT-------DVLD 178 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhccccc----cccc--ccc-------cccc
Confidence 578999999999999999999999999999999887654221 1111111110000 0111 010 1111
Q ss_pred cc--CHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEEEecCHHH--H----------
Q psy2071 157 YM--TDGMLLREGMSDPMLENYQVILLDEAHERTLATDILMGVLKEVIKQRADLKLVIMSATLDAGK--F---------- 222 (302)
Q Consensus 157 ~l--S~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~~~l~~ll~~~~~~~~~ii~~thd~~~--~---------- 222 (302)
.+ ..|+ .++++ +.+|++||+|| |...-+ +..+++... .|.+++++||+.+. +
T Consensus 179 ~~~k~~~~---~~~i~--~~~P~villDE---~~~~e~-----~~~l~~~~~-~G~~vI~ttH~~~~~~~~~r~~~~~l~ 244 (270)
T TIGR02858 179 GCPKAEGM---MMLIR--SMSPDVIVVDE---IGREED-----VEALLEALH-AGVSIIATAHGRDVEDLYKRPVFKELI 244 (270)
T ss_pred cchHHHHH---HHHHH--hCCCCEEEEeC---CCcHHH-----HHHHHHHHh-CCCEEEEEechhHHHHHHhChHHHHHH
Confidence 11 1132 22233 36999999999 654322 233333332 48899999997544 4
Q ss_pred -HhhccCCCeee
Q psy2071 223 -QQYFDNAPLMN 233 (302)
Q Consensus 223 -~~~~d~~~~l~ 233 (302)
..+|+++++|+
T Consensus 245 ~~~~~~r~i~L~ 256 (270)
T TIGR02858 245 ENEAFERYVVLS 256 (270)
T ss_pred hcCceEEEEEEe
Confidence 36788999997
No 421
>KOG0066|consensus
Probab=99.50 E-value=3e-15 Score=136.39 Aligned_cols=77 Identities=14% Similarity=0.203 Sum_probs=67.8
Q ss_pred ccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCC
Q psy2071 151 PKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNA 229 (302)
Q Consensus 151 ~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~ 229 (302)
.+++...+|||-+.|+++||||...|.+|.||| ||..+|.-. ..+.+.++-+ +.|+++++||-.++...|..|
T Consensus 406 Q~rPt~kFSGGWRMRvSLARALflEPTLLMLDE---PTNHLDLNAVIWLdNYLQgW---kKTLLIVSHDQgFLD~VCtdI 479 (807)
T KOG0066|consen 406 QERPTTKFSGGWRMRVSLARALFLEPTLLMLDE---PTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQGFLDSVCTDI 479 (807)
T ss_pred hcCCccccCCceeeehhHHHHHhcCceeeeecC---CccccccceeeehhhHHhhh---hheeEEEecccchHHHHHHHH
Confidence 345566799999999999999999999999999 999999655 6677777655 679999999999999999999
Q ss_pred Ceee
Q psy2071 230 PLMN 233 (302)
Q Consensus 230 ~~l~ 233 (302)
+.++
T Consensus 480 IHLD 483 (807)
T KOG0066|consen 480 IHLD 483 (807)
T ss_pred hhhh
Confidence 9887
No 422
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.49 E-value=2.2e-13 Score=134.20 Aligned_cols=180 Identities=22% Similarity=0.379 Sum_probs=117.5
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhc--------c-----cccCCCEEEeecCchhhhHHHHHHHhhhhhc
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVE--------Y-----SKSVGAKAVACTQPRRVAAMSVAQRVSEEMD 132 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~--------~-----~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~ 132 (302)
+...+...+.+|+.+.+.|++||||||++++++.. . .+......+...+|++..+..+...+....+
T Consensus 168 iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa~qi~~~i~~~vg 247 (675)
T PHA02653 168 VQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALVRLHSITLLKSLG 247 (675)
T ss_pred HHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHHHHHHHHHHHHhC
Confidence 46778888999999999999999999999877632 1 1122234566678886655555554443332
Q ss_pred cccccceeeeeeecCCCCc--cccccccCHHHHHH-HhccccCCCCCcEEEEcCCCCCCcchHHHHHHHHHHHHHcCCCc
Q psy2071 133 CQLGQEVGYSIRFEDCSSP--KTVLKYMTDGMLLR-EGMSDPMLENYQVILLDEAHERTLATDILMGVLKEVIKQRADLK 209 (302)
Q Consensus 133 ~~~~~~v~~~~~~~~~~~~--~~~~~~lS~G~~qr-~~la~al~~~p~lliLDE~~~p~~~lD~~~~~l~~ll~~~~~~~ 209 (302)
......+...+++++.... .+..+ ..|...+ ..+....+.+.++||+||+||.....|.+..+++++.... .+
T Consensus 248 ~~~~~g~~v~v~~Gg~~~~~~~t~~k--~~~Ilv~T~~L~l~~L~~v~~VVIDEaHEr~~~~DllL~llk~~~~~~--rq 323 (675)
T PHA02653 248 FDEIDGSPISLKYGSIPDELINTNPK--PYGLVFSTHKLTLNKLFDYGTVIIDEVHEHDQIGDIIIAVARKHIDKI--RS 323 (675)
T ss_pred ccccCCceEEEEECCcchHHhhcccC--CCCEEEEeCcccccccccCCEEEccccccCccchhHHHHHHHHhhhhc--CE
Confidence 2111222334555544321 11111 0111000 0122235788999999999999999998877777665432 26
Q ss_pred EEEEEEec--CHHHHHhhccCCCeeeecCcC-CccceeecCCC
Q psy2071 210 LVIMSATL--DAGKFQQYFDNAPLMNVPGRT-HPVEIFYTPEP 249 (302)
Q Consensus 210 ~~ii~~th--d~~~~~~~~d~~~~l~i~g~~-~~~~~~~~~~~ 249 (302)
+.+++||- +.+.+..++....+++++|+. +|++.+|.+.+
T Consensus 324 ~ILmSATl~~dv~~l~~~~~~p~~I~I~grt~~pV~~~yi~~~ 366 (675)
T PHA02653 324 LFLMTATLEDDRDRIKEFFPNPAFVHIPGGTLFPISEVYVKNK 366 (675)
T ss_pred EEEEccCCcHhHHHHHHHhcCCcEEEeCCCcCCCeEEEEeecC
Confidence 89999999 566788899888999999985 99999987543
No 423
>KOG0921|consensus
Probab=99.48 E-value=5.4e-14 Score=136.73 Aligned_cols=194 Identities=36% Similarity=0.645 Sum_probs=164.8
Q ss_pred HHHHhhcCCChhHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCC---CEEEeecCchhhhHHHHHHHhhh
Q psy2071 53 ELHRKRITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVG---AKAVACTQPRRVAAMSVAQRVSE 129 (302)
Q Consensus 53 ~l~~~r~~lp~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G---~~~i~~~~~~~~~~~~~~~~~~~ 129 (302)
.....|.++|+......|...+..+.+++|.|++||||||++-+.+..--...+ .....+.+++++.+++++.++++
T Consensus 369 ~~~a~re~lpva~~~~~i~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~g~~~na~v~qprrisaisiaerva~ 448 (1282)
T KOG0921|consen 369 KITAQREELPVAQYRSEILQAVAENRVVIIKGETGCGKSTQVAQFLLESFLENSNGASFNAVVSQPRRISAISLAERVAN 448 (1282)
T ss_pred hhhhhhhhCcHHHHHHHHHHHHhcCceeeEeecccccchhHHHHHHHHHHhhccccccccceeccccccchHHHHHHHHH
Confidence 456778899999999999999999999999999999999999887654322222 22345678999999999999999
Q ss_pred hhccccccceeeeeeecCCCC-ccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHHHHHHHHHHHcCCC
Q psy2071 130 EMDCQLGQEVGYSIRFEDCSS-PKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILMGVLKEVIKQRADL 208 (302)
Q Consensus 130 ~~~~~~~~~v~~~~~~~~~~~-~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~~~l~~ll~~~~~~ 208 (302)
+....+++.++|.+|+....+ ....+-+++-|-..|.+=+ -+....++|.||.|++....|.+..++++++......
T Consensus 449 er~e~~g~tvgy~vRf~Sa~prpyg~i~fctvgvllr~~e~--glrg~sh~i~deiherdv~~dfll~~lr~m~~ty~dl 526 (1282)
T KOG0921|consen 449 ERGEEVGETCGYNVRFDSATPRPYGSIMFCTVGVLLRMMEN--GLRGISHVIIDEIHERDVDTDFVLIVLREMISTYRDL 526 (1282)
T ss_pred hhHHhhcccccccccccccccccccceeeeccchhhhhhhh--cccccccccchhhhhhccchHHHHHHHHhhhccchhh
Confidence 999999999999999987654 3455667888877775543 3678889999999999999999999999998888888
Q ss_pred cEEEEEEecCHHHHHhhccCCCeeeecCcCCccceeecCC
Q psy2071 209 KLVIMSATLDAGKFQQYFDNAPLMNVPGRTHPVEIFYTPE 248 (302)
Q Consensus 209 ~~~ii~~thd~~~~~~~~d~~~~l~i~g~~~~~~~~~~~~ 248 (302)
...+|++|-|-+.+..++..|+.+.+.|+.+|++.|+...
T Consensus 527 ~v~lmsatIdTd~f~~~f~~~p~~~~~grt~pvq~F~led 566 (1282)
T KOG0921|consen 527 RVVLMSATIDTDLFTNFFSSIPDVTVHGRTFPVQSFFLED 566 (1282)
T ss_pred hhhhhhcccchhhhhhhhccccceeeccccccHHHHHHHH
Confidence 9999999999999999999999999999999998887643
No 424
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=99.46 E-value=5.4e-14 Score=121.10 Aligned_cols=135 Identities=16% Similarity=0.129 Sum_probs=76.6
Q ss_pred HHHHHHHHHhCCEEEEEccCCCCccchhhhhhhccccc-CCCEEEeecCchhhhHHHHHHHhhhhhccccccceeeeeee
Q psy2071 67 RTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKS-VGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRF 145 (302)
Q Consensus 67 ~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~-~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 145 (302)
..++++...+ ++++|+|||||||||+++++++..-.. .|. .+.+. ...+++..+.
T Consensus 21 ~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l~~~g~-~vp~~----------------------~~~i~~~~~i 76 (216)
T cd03284 21 PNDTELDPER-QILLITGPNMAGKSTYLRQVALIALLAQIGS-FVPAS----------------------KAEIGVVDRI 76 (216)
T ss_pred eeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHHhccCC-eeccc----------------------cceecceeeE
Confidence 3455555544 899999999999999999997643211 121 00000 0011211111
Q ss_pred cCCCCccccccccCHHHHH----HHhccc--cCCCCCcEEEEcCCCCC---CcchHHHHHHHHHHHHHcCCC-cEEEEEE
Q psy2071 146 EDCSSPKTVLKYMTDGMLL----REGMSD--PMLENYQVILLDEAHER---TLATDILMGVLKEVIKQRADL-KLVIMSA 215 (302)
Q Consensus 146 ~~~~~~~~~~~~lS~G~~q----r~~la~--al~~~p~lliLDE~~~p---~~~lD~~~~~l~~ll~~~~~~-~~~ii~~ 215 (302)
.. .-.....++.|+.. +..++. ..+.+|+++|||| | |+++|... ....+++...+. +.+++++
T Consensus 77 ~~---~~~~~~~ls~g~s~f~~e~~~l~~~l~~~~~~~llllDE---p~~gt~~lD~~~-~~~~il~~l~~~~~~~vi~~ 149 (216)
T cd03284 77 FT---RIGASDDLAGGRSTFMVEMVETANILNNATERSLVLLDE---IGRGTSTYDGLS-IAWAIVEYLHEKIGAKTLFA 149 (216)
T ss_pred ec---cCCchhhhccCcchHHHHHHHHHHHHHhCCCCeEEEEec---CCCCCChHHHHH-HHHHHHHHHHhccCCcEEEE
Confidence 11 11112344444433 223433 3467999999999 8 88888643 222333333333 6788999
Q ss_pred ecCHHHHHhhccCCCeee
Q psy2071 216 TLDAGKFQQYFDNAPLMN 233 (302)
Q Consensus 216 thd~~~~~~~~d~~~~l~ 233 (302)
||+. ++.+++|++..+.
T Consensus 150 TH~~-~l~~l~~~~~~v~ 166 (216)
T cd03284 150 THYH-ELTELEGKLPRVK 166 (216)
T ss_pred eCcH-HHHHHhhcCCCeE
Confidence 9996 5566888776554
No 425
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.46 E-value=2.5e-13 Score=116.77 Aligned_cols=123 Identities=19% Similarity=0.154 Sum_probs=79.8
Q ss_pred CEEEEEccCCCCccchhhhhhhcc-cccCCCEEEeecCchhhhHHHHHHHhhhhhccccccceeeeeee-cCCCCccccc
Q psy2071 78 QCIVLVGETGSGKTTQIPQWCVEY-SKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRF-EDCSSPKTVL 155 (302)
Q Consensus 78 ~i~~liG~nGsGKSTll~~i~g~~-~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~~ 155 (302)
.+++|+||||+||||++++++... .+..|...... .. .+++.-+. ......++..
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~~~~la~~G~~v~a~-~~----------------------~~~~~d~i~~~l~~~~si~ 86 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVALIVFLAHIGSFVPAD-SA----------------------TIGLVDKIFTRMSSRESVS 86 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHHHHHHHhCCCeeEcC-Cc----------------------EEeeeeeeeeeeCCccChh
Confidence 789999999999999999997421 14455433211 00 11111111 1111223333
Q ss_pred cccC--HHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH--HHHHHHHHHcCC---CcEEEEEEecCHHHHHhhc
Q psy2071 156 KYMT--DGMLLREGMSDPMLENYQVILLDEAHERTLATDILM--GVLKEVIKQRAD---LKLVIMSATLDAGKFQQYF 226 (302)
Q Consensus 156 ~~lS--~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~--~~l~~ll~~~~~---~~~~ii~~thd~~~~~~~~ 226 (302)
..+| .-+.+|++++++++.+++++|||| |+.++|+.. ..+..+++...+ .+.+++++||+.+.+....
T Consensus 87 ~~~S~f~~el~~l~~~l~~~~~~slvllDE---~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~~ 161 (213)
T cd03281 87 SGQSAFMIDLYQVSKALRLATRRSLVLIDE---FGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNRSL 161 (213)
T ss_pred hccchHHHHHHHHHHHHHhCCCCcEEEecc---ccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhhh
Confidence 4445 346789999999999999999999 999999753 444555554432 2458899999999888764
No 426
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=99.39 E-value=3.2e-13 Score=135.40 Aligned_cols=131 Identities=15% Similarity=0.095 Sum_probs=87.8
Q ss_pred HHHHHHhC-CEEEEEccCCCCccchhhhhhhc-ccccCC-CEEEeecCchhhhHHHHHHHhhhhhccccccceeeeeeec
Q psy2071 70 FMTLLAQN-QCIVLVGETGSGKTTQIPQWCVE-YSKSVG-AKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRFE 146 (302)
Q Consensus 70 i~~~i~~g-~i~~liG~nGsGKSTll~~i~g~-~~~~~G-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 146 (302)
+++.+..+ ++++|+||||+||||++++++|. +.+..| .+..... ... ...+.+. ..+.
T Consensus 314 ~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G~~Vpa~~~--~~~---------------~~~d~i~--~~i~ 374 (771)
T TIGR01069 314 FTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQSGIPIPANEH--SEI---------------PYFEEIF--ADIG 374 (771)
T ss_pred ceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHHhCCCccCCcc--ccc---------------cchhhee--eecC
Confidence 35556656 89999999999999999999987 455555 2211100 000 0011111 1111
Q ss_pred CCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHH-HHHHHHcCCCcEEEEEEecCHHHHH
Q psy2071 147 DCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVL-KEVIKQRADLKLVIMSATLDAGKFQ 223 (302)
Q Consensus 147 ~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l-~~ll~~~~~~~~~ii~~thd~~~~~ 223 (302)
........+..+|+||+++..+++.+ .+|+++|||| |+.++|+.. ..+ ..++....+.+.++|++||+.+...
T Consensus 375 ~~~si~~~LStfS~~m~~~~~il~~~-~~~sLvLlDE---~g~GtD~~eg~ala~aiLe~l~~~g~~viitTH~~eL~~ 449 (771)
T TIGR01069 375 DEQSIEQNLSTFSGHMKNISAILSKT-TENSLVLFDE---LGAGTDPDEGSALAISILEYLLKQNAQVLITTHYKELKA 449 (771)
T ss_pred hHhHHhhhhhHHHHHHHHHHHHHHhc-CCCcEEEecC---CCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHHHH
Confidence 11222344677999999999888776 7899999999 999999877 334 5677666566889999999987643
No 427
>KOG0063|consensus
Probab=99.38 E-value=2.5e-13 Score=123.61 Aligned_cols=158 Identities=21% Similarity=0.226 Sum_probs=102.6
Q ss_pred HHHHHHHHhCC-----EEEEEccCCCCccchhhhhhhcccccCC-CEEEeecC-------chhhh-HHHHHH-Hhh-hhh
Q psy2071 68 TEFMTLLAQNQ-----CIVLVGETGSGKTTQIPQWCVEYSKSVG-AKAVACTQ-------PRRVA-AMSVAQ-RVS-EEM 131 (302)
Q Consensus 68 ~~i~~~i~~g~-----i~~liG~nGsGKSTll~~i~g~~~~~~G-~~~i~~~~-------~~~~~-~~~~~~-~~~-~~~ 131 (302)
.++.+.|+.|+ +++.+|+||.||||++++++|.++|+.| ++...... +.+.. ...+.. .+. .++
T Consensus 353 g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~~~e~p~lnVSykpqkispK~~~tvR~ll~~kIr~ay~ 432 (592)
T KOG0063|consen 353 GDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEGGEIPVLNVSYKPQKISPKREGTVRQLLHTKIRDAYM 432 (592)
T ss_pred eeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCccCcccccceeccccccCccccchHHHHHHHHhHhhhc
Confidence 45556666664 6899999999999999999999999987 33222111 11111 111111 000 011
Q ss_pred ccccccceeeeeeecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHHH-----HHHHHHHHcC
Q psy2071 132 DCQLGQEVGYSIRFEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILMG-----VLKEVIKQRA 206 (302)
Q Consensus 132 ~~~~~~~v~~~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~~-----~l~~ll~~~~ 206 (302)
.......+.-.++.+. ..+..+..||||++||+++|.+|=...++.++|| |..-+|...+ .++.++-
T Consensus 433 ~pqF~~dvmkpL~ie~--i~dqevq~lSggelQRval~KOGGKpAdvYliDE---psAylDSeQRi~AskvikRfil--- 504 (592)
T KOG0063|consen 433 HPQFVNDVMKPLQIEN--IIDQEVQGLSGGELQRVALALCLGKPADVYLIDE---PSAYLDSEQRIIASKVIKRFIL--- 504 (592)
T ss_pred CHHHHHhhhhhhhHHH--HHhHHhhcCCchhhHHHHHHHhcCCCCceEEecC---chhhcChHHHHHHHHHHHHHHH---
Confidence 1111111222222211 2345678899999999999999999999999999 9999996552 2333332
Q ss_pred CCcEEEEEEecCHHHHHhhccCCCeee
Q psy2071 207 DLKLVIMSATLDAGKFQQYFDNAPLMN 233 (302)
Q Consensus 207 ~~~~~ii~~thd~~~~~~~~d~~~~l~ 233 (302)
..+.|-.++.||.-.+.-++|++++..
T Consensus 505 hakktafvVEhdfImaTYladrvivf~ 531 (592)
T KOG0063|consen 505 HAKKTAFVVEHDFIMATYLADRVIVFE 531 (592)
T ss_pred hccchhhhhhhHHHHHHhhcceeEEEe
Confidence 236677788999988888999998876
No 428
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=99.35 E-value=1.5e-12 Score=131.03 Aligned_cols=136 Identities=15% Similarity=0.161 Sum_probs=91.2
Q ss_pred hCCEEEEEccCCCCccchhhhhhhcc-cccCCCEEEeecCchhhhHHHHHHHhhhhhccccccceeeeeeecCCCCcccc
Q psy2071 76 QNQCIVLVGETGSGKTTQIPQWCVEY-SKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRFEDCSSPKTV 154 (302)
Q Consensus 76 ~g~i~~liG~nGsGKSTll~~i~g~~-~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 154 (302)
.+.+++|+|||++||||+|++++... -...|. .+-.... ....+.+.+. .+..........
T Consensus 326 ~~~~~iITGpN~gGKTt~lktigl~~~maq~G~-~vpa~~~---------------~~i~~~~~i~--~~ig~~~si~~~ 387 (782)
T PRK00409 326 DKTVLVITGPNTGGKTVTLKTLGLAALMAKSGL-PIPANEP---------------SEIPVFKEIF--ADIGDEQSIEQS 387 (782)
T ss_pred CceEEEEECCCCCCcHHHHHHHHHHHHHHHhCC-CcccCCC---------------ccccccceEE--EecCCccchhhc
Confidence 45689999999999999999986431 122221 0100000 0011112221 122222334456
Q ss_pred ccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-H-HHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCee
Q psy2071 155 LKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-G-VLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLM 232 (302)
Q Consensus 155 ~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~-~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l 232 (302)
+..+|+||++++.+++++ .+|+++|||| |+.++|+.. . +...++....+.+.+++++||+.+.....+++..++
T Consensus 388 lStfS~~m~~~~~Il~~~-~~~sLvLlDE---~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~el~~~~~~~~~v~ 463 (782)
T PRK00409 388 LSTFSGHMTNIVRILEKA-DKNSLVLFDE---LGAGTDPDEGAALAISILEYLRKRGAKIIATTHYKELKALMYNREGVE 463 (782)
T ss_pred hhHHHHHHHHHHHHHHhC-CcCcEEEecC---CCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChHHHHHHHhcCCCeE
Confidence 678999999999999887 8999999999 999999876 3 335566655555889999999998888777776665
Q ss_pred e
Q psy2071 233 N 233 (302)
Q Consensus 233 ~ 233 (302)
.
T Consensus 464 ~ 464 (782)
T PRK00409 464 N 464 (782)
T ss_pred E
Confidence 4
No 429
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.30 E-value=3.1e-12 Score=110.37 Aligned_cols=132 Identities=14% Similarity=0.101 Sum_probs=79.2
Q ss_pred HHHHHHHHHhCCEEEEEccCCCCccchhhhhhh-cccccCCCEEEeecCchhhhHHHHHHHhhhhhccccccceeeeeee
Q psy2071 67 RTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCV-EYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRF 145 (302)
Q Consensus 67 ~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g-~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 145 (302)
..++++.+.+|++++|+||||+||||+++++++ .+.+..|..... ... ...+.+.+-. ++
T Consensus 21 ~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a-~~~----------------~~~~~~~i~~--~~ 81 (222)
T cd03287 21 PNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPA-SSA----------------TLSIFDSVLT--RM 81 (222)
T ss_pred EEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEc-Cce----------------EEeccceEEE--Ee
Confidence 456777888999999999999999999999999 566677754322 111 0111112211 11
Q ss_pred cCCCCccccccccCHH--HHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH--HHHHHHHHHcCCC-cEEEEEEecCHH
Q psy2071 146 EDCSSPKTVLKYMTDG--MLLREGMSDPMLENYQVILLDEAHERTLATDILM--GVLKEVIKQRADL-KLVIMSATLDAG 220 (302)
Q Consensus 146 ~~~~~~~~~~~~lS~G--~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~--~~l~~ll~~~~~~-~~~ii~~thd~~ 220 (302)
.. .+.....+|.= +.+++.-....+.+++++|||| +..+++..- .....+++.+.+. +.+++++||+.+
T Consensus 82 ~~---~d~~~~~~StF~~e~~~~~~il~~~~~~sLvllDE---~~~gT~~~d~~~i~~~il~~l~~~~~~~~i~~TH~~~ 155 (222)
T cd03287 82 GA---SDSIQHGMSTFMVELSETSHILSNCTSRSLVILDE---LGRGTSTHDGIAIAYATLHYLLEEKKCLVLFVTHYPS 155 (222)
T ss_pred cC---ccccccccchHHHHHHHHHHHHHhCCCCeEEEEcc---CCCCCChhhHHHHHHHHHHHHHhccCCeEEEEcccHH
Confidence 11 11222223332 3333333333467899999999 766665333 2234445444443 788999999988
Q ss_pred HHH
Q psy2071 221 KFQ 223 (302)
Q Consensus 221 ~~~ 223 (302)
...
T Consensus 156 l~~ 158 (222)
T cd03287 156 LGE 158 (222)
T ss_pred HHH
Confidence 754
No 430
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.28 E-value=4.3e-12 Score=113.10 Aligned_cols=75 Identities=19% Similarity=0.273 Sum_probs=55.6
Q ss_pred ccccCHHHHHHHhccccCC---------CCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHh
Q psy2071 155 LKYMTDGMLLREGMSDPML---------ENYQVILLDEAHERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQ 224 (302)
Q Consensus 155 ~~~lS~G~~qr~~la~al~---------~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~ 224 (302)
...+|+||++++++|++|+ .+|+++|+|| |++++|+.. ..+.+.+... + .+++++|+.+.+..
T Consensus 181 ~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDE---p~a~LD~~~~~~l~~~l~~~---~-q~ii~~~~~~~~~~ 253 (270)
T cd03242 181 ADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDD---VLAELDLGRQAALLDAIEGR---V-QTFVTTTDLADFDA 253 (270)
T ss_pred HHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcC---cchhcCHHHHHHHHHHhhcC---C-CEEEEeCCchhccc
Confidence 3448999999999999874 7999999999 999999877 6677776544 2 34555667777777
Q ss_pred hc---cCCCeeeecCc
Q psy2071 225 YF---DNAPLMNVPGR 237 (302)
Q Consensus 225 ~~---d~~~~l~i~g~ 237 (302)
+| +++..++ .|+
T Consensus 254 ~~~~~~~i~~l~-~g~ 268 (270)
T cd03242 254 LWLRRAQIFRVD-AGT 268 (270)
T ss_pred hhccCccEEEEe-CcE
Confidence 77 3444444 443
No 431
>KOG0065|consensus
Probab=99.26 E-value=1.1e-12 Score=133.48 Aligned_cols=170 Identities=12% Similarity=0.189 Sum_probs=114.1
Q ss_pred hHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhccccc---CCCEEEeecCchhhhH----HHHHHHhhhhhccccc
Q psy2071 64 FEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKS---VGAKAVACTQPRRVAA----MSVAQRVSEEMDCQLG 136 (302)
Q Consensus 64 ~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~---~G~~~i~~~~~~~~~~----~~~~~~~~~~~~~~~~ 136 (302)
...+++++..+++|+.+.++|+.|||||||++.++|...-. .|.+..+|.+...... ....+.-.....+++.
T Consensus 128 ~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTVr 207 (1391)
T KOG0065|consen 128 IQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTVR 207 (1391)
T ss_pred ceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEEe
Confidence 45689999999999999999999999999999999976432 3578888765322111 1111111112233444
Q ss_pred cceeeeeeecCC---------------------------CCc-----cccccccCHHHHHHHhccccCCCCCcEEEEcCC
Q psy2071 137 QEVGYSIRFEDC---------------------------SSP-----KTVLKYMTDGMLLREGMSDPMLENYQVILLDEA 184 (302)
Q Consensus 137 ~~v~~~~~~~~~---------------------------~~~-----~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~ 184 (302)
+.+.+..+.... .-. +..++-.|||||+|+.++-+++.+++++.+||
T Consensus 208 eTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De- 286 (1391)
T KOG0065|consen 208 ETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDE- 286 (1391)
T ss_pred ehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeec-
Confidence 444333322111 001 12234499999999999999999999999999
Q ss_pred CCCCcchHHHH--HHHHHHHHHcCCCcEE-EEEEecCHHHHHhhccCCCeeeecCc
Q psy2071 185 HERTLATDILM--GVLKEVIKQRADLKLV-IMSATLDAGKFQQYFDNAPLMNVPGR 237 (302)
Q Consensus 185 ~~p~~~lD~~~--~~l~~ll~~~~~~~~~-ii~~thd~~~~~~~~d~~~~l~i~g~ 237 (302)
.+.|+|... +.++.+.+.....+.| ++++..-.++..+++|.|++|. +|.
T Consensus 287 --~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~-eG~ 339 (1391)
T KOG0065|consen 287 --ITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLS-EGY 339 (1391)
T ss_pred --ccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeee-ccc
Confidence 999999766 4444443332333444 4444456688999999999998 776
No 432
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.25 E-value=5.2e-12 Score=128.35 Aligned_cols=78 Identities=14% Similarity=0.113 Sum_probs=70.6
Q ss_pred ccccccccCHHHHHHHhccccCCCCC--cEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhcc
Q psy2071 151 PKTVLKYMTDGMLLREGMSDPMLENY--QVILLDEAHERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFD 227 (302)
Q Consensus 151 ~~~~~~~lS~G~~qr~~la~al~~~p--~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d 227 (302)
.++.+..|||||+||+.||++|+.+| .++|||| |+++||+.. ..+.++++++.+.|.|||+++||++.+. +||
T Consensus 481 l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDE---PtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~~~i~-~aD 556 (924)
T TIGR00630 481 LSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDE---PSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDEETIR-AAD 556 (924)
T ss_pred cCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcC---CccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHh-hCC
Confidence 35677899999999999999999986 8999999 999999887 7788888877777999999999999886 899
Q ss_pred CCCee
Q psy2071 228 NAPLM 232 (302)
Q Consensus 228 ~~~~l 232 (302)
++++|
T Consensus 557 ~vi~L 561 (924)
T TIGR00630 557 YVIDI 561 (924)
T ss_pred EEEEe
Confidence 99999
No 433
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.25 E-value=4.2e-12 Score=129.25 Aligned_cols=78 Identities=15% Similarity=0.125 Sum_probs=71.1
Q ss_pred ccccccccCHHHHHHHhccccCCCCC--cEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhcc
Q psy2071 151 PKTVLKYMTDGMLLREGMSDPMLENY--QVILLDEAHERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFD 227 (302)
Q Consensus 151 ~~~~~~~lS~G~~qr~~la~al~~~p--~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d 227 (302)
.++.+..||+||+||++||++|+.+| +++|||| |+++||+.. ..+.++++++.+.|.|||+++|+++++. .||
T Consensus 483 l~r~~~~LSgGE~QRv~LA~aL~~~~~~~llILDE---PtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~~~~i~-~aD 558 (943)
T PRK00349 483 LSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDE---PSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHDEDTIR-AAD 558 (943)
T ss_pred CCCchhhCCHHHHHHHHHHHHHhhCCCCcEEEecC---CccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH-hCC
Confidence 46778899999999999999999997 9999999 999999887 7888888877777999999999999986 699
Q ss_pred CCCee
Q psy2071 228 NAPLM 232 (302)
Q Consensus 228 ~~~~l 232 (302)
++++|
T Consensus 559 ~vi~L 563 (943)
T PRK00349 559 YIVDI 563 (943)
T ss_pred EEEEe
Confidence 99999
No 434
>PRK13695 putative NTPase; Provisional
Probab=99.24 E-value=9.6e-12 Score=103.56 Aligned_cols=148 Identities=18% Similarity=0.196 Sum_probs=83.8
Q ss_pred EEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhh-ccccccceeeeeeec--CCCCccccc
Q psy2071 79 CIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEM-DCQLGQEVGYSIRFE--DCSSPKTVL 155 (302)
Q Consensus 79 i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~--~~~~~~~~~ 155 (302)
.++|+|++||||||++..+.+.+.+ .|. .+.+.-..... .......... ....+. -.+..+.. ......+..
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~~-~G~-~~~g~~~~~~~--~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ 76 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLKE-EGY-KVGGFYTEEVR--EGGKRIGFKIIDLDTGE-EGILARVGFPSRPRVGKYV 76 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH-CCC-eEEEEEcHHHH--hcCCccceEEEEcCCCC-eEEccccCCCCCCceeeEE
Confidence 4789999999999999998877654 453 22221111100 0000000000 000000 00101111 011112334
Q ss_pred cccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeee
Q psy2071 156 KYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNV 234 (302)
Q Consensus 156 ~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i 234 (302)
..+|++++.+..+++..+.+|++||+||++ ++...+... ..+.+++ +.+.+++.++|+ ..+..++|++..+.
T Consensus 77 ~~lsgle~~~~~l~~~~l~~~~~lllDE~~-~~e~~~~~~~~~l~~~~----~~~~~~i~v~h~-~~~~~~~~~i~~~~- 149 (174)
T PRK13695 77 VNLEDLERIGIPALERALEEADVIIIDEIG-KMELKSPKFVKAVEEVL----DSEKPVIATLHR-RSVHPFVQEIKSRP- 149 (174)
T ss_pred EehHHHHHHHHHHHHhccCCCCEEEEECCC-cchhhhHHHHHHHHHHH----hCCCeEEEEECc-hhhHHHHHHHhccC-
Confidence 569999999999998888999999999942 333444333 4444443 347799999998 45667889887776
Q ss_pred cCcC
Q psy2071 235 PGRT 238 (302)
Q Consensus 235 ~g~~ 238 (302)
.|+.
T Consensus 150 ~~~i 153 (174)
T PRK13695 150 GGRV 153 (174)
T ss_pred CcEE
Confidence 5543
No 435
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=99.21 E-value=1e-11 Score=104.15 Aligned_cols=142 Identities=10% Similarity=0.015 Sum_probs=85.0
Q ss_pred EEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhhcccccc--ceeeeeeecCCCCcccccc
Q psy2071 79 CIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQ--EVGYSIRFEDCSSPKTVLK 156 (302)
Q Consensus 79 i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~ 156 (302)
++.|.||+|+||||+.-+++-...-....+.+...+............. +..... ..+.. ...+....
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~~~~~~~~~~~----g~~~~~l~~~g~l------~~~d~~~~ 70 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEELIENAESL----GWDLERLEDEGLL------AIVDADPD 70 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHc----CCChHHHHhcCCe------EEEecCcc
Confidence 3689999999999998766543322223444444332221111111111 111110 11110 11123345
Q ss_pred ccCHHHHH------HHhccccCCCCCcEEEEcCCCCCCcchH---HHH-HHHHHHHHHcCCCcEEEEEEecCHHH-----
Q psy2071 157 YMTDGMLL------REGMSDPMLENYQVILLDEAHERTLATD---ILM-GVLKEVIKQRADLKLVIMSATLDAGK----- 221 (302)
Q Consensus 157 ~lS~G~~q------r~~la~al~~~p~lliLDE~~~p~~~lD---~~~-~~l~~ll~~~~~~~~~ii~~thd~~~----- 221 (302)
.+|+|+.+ ......+...+|+++++|| ++..+| ... ..+.+++...++.|+|+++++|+...
T Consensus 71 ~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~---~~~~~~~~~~~~~~~i~~l~~~l~~~g~tvi~v~~~~~~~~~~~ 147 (187)
T cd01124 71 EIGPAESSLRLELIQRLKDAIEEFKAKRVVIDS---VSGLLLMEQSTARLEIRRLLFALKRFGVTTLLTSEQSGLEGTGF 147 (187)
T ss_pred ccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeC---cHHHhhcChHHHHHHHHHHHHHHHHCCCEEEEEeccccCCCccc
Confidence 67888877 4444555667999999999 888887 444 55666666655668999999998764
Q ss_pred ----HHhhccCCCeee
Q psy2071 222 ----FQQYFDNAPLMN 233 (302)
Q Consensus 222 ----~~~~~d~~~~l~ 233 (302)
+..+||.++.|+
T Consensus 148 ~~~~~~~~aD~ii~l~ 163 (187)
T cd01124 148 GGGDVEYLVDGVIRLR 163 (187)
T ss_pred CcCceeEeeeEEEEEE
Confidence 678888888887
No 436
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.17 E-value=2.2e-11 Score=129.57 Aligned_cols=79 Identities=18% Similarity=0.182 Sum_probs=71.3
Q ss_pred ccccccccCHHHHHHHhccccCCCCC--cEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhcc
Q psy2071 151 PKTVLKYMTDGMLLREGMSDPMLENY--QVILLDEAHERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFD 227 (302)
Q Consensus 151 ~~~~~~~lS~G~~qr~~la~al~~~p--~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d 227 (302)
.++.+..||+||+||++||++|+.+| .++|||| |+++||+.. ..+.++++.+.+.|.|||++|||.+ +.++||
T Consensus 470 ldR~~~tLSGGE~QRV~LAraL~~~p~g~lLILDE---PTagLD~~~~~~L~~lL~~L~~~G~TVIvVeHd~~-vi~~aD 545 (1809)
T PRK00635 470 PERALATLSGGEQERTALAKHLGAELIGITYILDE---PSIGLHPQDTHKLINVIKKLRDQGNTVLLVEHDEQ-MISLAD 545 (1809)
T ss_pred CCCchhhCCHHHHHHHHHHHHHhcCCCCcEEEEEC---CccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHH-HHHhCC
Confidence 35677899999999999999999999 8999999 999999877 7788888877667899999999999 668999
Q ss_pred CCCeee
Q psy2071 228 NAPLMN 233 (302)
Q Consensus 228 ~~~~l~ 233 (302)
++++|.
T Consensus 546 rVi~L~ 551 (1809)
T PRK00635 546 RIIDIG 551 (1809)
T ss_pred EEEEEc
Confidence 999995
No 437
>KOG0063|consensus
Probab=99.14 E-value=5.4e-11 Score=108.57 Aligned_cols=156 Identities=15% Similarity=0.109 Sum_probs=98.0
Q ss_pred HHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCch------h-hhHHHHH--------------HHhhhhh-
Q psy2071 74 LAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPR------R-VAAMSVA--------------QRVSEEM- 131 (302)
Q Consensus 74 i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~------~-~~~~~~~--------------~~~~~~~- 131 (302)
-.+|++.+++|-||-||||-++.++|-.+|.-|.-. .+.... + ....... |++-..+
T Consensus 97 prpg~vlglvgtngigkstAlkilagk~kpnlg~~~-~pp~w~~il~~frgselq~yftk~le~~lk~~~kpQyvd~ipr 175 (592)
T KOG0063|consen 97 PRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRYD-NPPDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQYVDQIPR 175 (592)
T ss_pred CCcchhccccccCcccHHHHHHHHhCCCCCCCCCCC-CCcchHHHhhhhhhHHHhhhhhhhccccccCcCChHHHHHHHH
Confidence 358999999999999999999999999999877421 110000 0 0000000 0110000
Q ss_pred --ccccccceeeeee----------ecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHHH-HH
Q psy2071 132 --DCQLGQEVGYSIR----------FEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILMG-VL 198 (302)
Q Consensus 132 --~~~~~~~v~~~~~----------~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~~-~l 198 (302)
..+++..++-... .......++.+..+|||+.||.++|.+.+.+.++.++|| |++.+|.-.. ..
T Consensus 176 ~~k~~v~~~l~~~~~r~~~~~~~~~~~L~~~~~re~~~lsggelqrfaia~~~vq~advyMFDE---pSsYLDVKQRLka 252 (592)
T KOG0063|consen 176 AVKGTVGSLLDRKDERDNKEEVCDQLDLNNLLDREVEQLSGGELQRFAIAMVCVQKADVYMFDE---PSSYLDVKQRLKA 252 (592)
T ss_pred HHHHHHHHHHHHHhhcccHHHHHHHHHHhhHHHhhhhhcccchhhhhhhhhhhhhhcceeEecC---CcccchHHHhhhH
Confidence 0011111110000 000011244567799999999999999999999999999 9999997652 23
Q ss_pred HHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeee
Q psy2071 199 KEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMN 233 (302)
Q Consensus 199 ~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~ 233 (302)
...++.+-.-..-|+++.||+..+.-+.|-+.++.
T Consensus 253 A~~IRsl~~p~~YiIVVEHDLsVLDylSDFiCcLY 287 (592)
T KOG0063|consen 253 AITIRSLINPDRYIIVVEHDLSVLDYLSDFICCLY 287 (592)
T ss_pred HHHHHHhhCCCCeEEEEEeechHHHhhhcceeEEe
Confidence 33344333334566777999999998999888876
No 438
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=99.14 E-value=5.8e-11 Score=103.29 Aligned_cols=146 Identities=12% Similarity=0.100 Sum_probs=77.1
Q ss_pred HHHhCCEEEEEccCCCCccch-hhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhhcc-ccccceeeeeeecCCCC
Q psy2071 73 LLAQNQCIVLVGETGSGKTTQ-IPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDC-QLGQEVGYSIRFEDCSS 150 (302)
Q Consensus 73 ~i~~g~i~~liG~nGsGKSTl-l~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~ 150 (302)
-+++|++++|+|+|||||||+ ++.+++..++....+++...... .........+...... .....+.+ ....
T Consensus 20 gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~~-~~~~~~~~~~g~~~~~~~~~~~l~~-~~~~---- 93 (230)
T PRK08533 20 GIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLTT-TEFIKQMMSLGYDINKKLISGKLLY-IPVY---- 93 (230)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCH-HHHHHHHHHhCCchHHHhhcCcEEE-EEec----
Confidence 378999999999999999999 57777766654444555433322 1222222111111000 00011111 1110
Q ss_pred ccccccccCHHHHHHHhccc----cCCCCCcEEEEcCCCCCCcch----HHHH-HHHHHHHHHcCCCcEEEEEEecCHHH
Q psy2071 151 PKTVLKYMTDGMLLREGMSD----PMLENYQVILLDEAHERTLAT----DILM-GVLKEVIKQRADLKLVIMSATLDAGK 221 (302)
Q Consensus 151 ~~~~~~~lS~G~~qr~~la~----al~~~p~lliLDE~~~p~~~l----D~~~-~~l~~ll~~~~~~~~~ii~~thd~~~ 221 (302)
..++++..++..+.+ .-..+|+++++|| |+..+ |+.. ..+.++++...+.+.|+++ ||+...
T Consensus 94 -----~~~~~~~~~~~~l~~il~~~~~~~~~~lVIDe---~t~~l~~~~d~~~~~~l~~~l~~l~~~g~tvi~-t~~~~~ 164 (230)
T PRK08533 94 -----PLLSGNSEKRKFLKKLMNTRRFYEKDVIIIDS---LSSLISNDASEVAVNDLMAFFKRISSLNKVIIL-TANPKE 164 (230)
T ss_pred -----ccccChHHHHHHHHHHHHHHHhcCCCEEEEEC---ccHHhcCCcchHHHHHHHHHHHHHHhCCCEEEE-Eecccc
Confidence 113333322222211 1125799999999 88887 6543 5566666655555666665 666543
Q ss_pred H--------HhhccCCCeee
Q psy2071 222 F--------QQYFDNAPLMN 233 (302)
Q Consensus 222 ~--------~~~~d~~~~l~ 233 (302)
+ ..++|.++.|+
T Consensus 165 ~~~~~~~~~~~~~DgvI~L~ 184 (230)
T PRK08533 165 LDESVLTILRTAATMLIRLE 184 (230)
T ss_pred cccccceeEEEeeeEEEEEE
Confidence 2 34456666665
No 439
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.13 E-value=3.9e-11 Score=103.26 Aligned_cols=136 Identities=15% Similarity=0.154 Sum_probs=79.3
Q ss_pred HHHHHHHHHhCCEEEEEccCCCCccchhhhhhhccccc-CCCEEEeecCchhhhHHHHHHHhhhhhccccccceeeeeee
Q psy2071 67 RTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKS-VGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRF 145 (302)
Q Consensus 67 ~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~-~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 145 (302)
.+++++.+++|++++|+||||+||||+++++++..-.. .|. .+ |.... .....+.+-. ++
T Consensus 20 ~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~la~~G~-~v----pa~~~------------~i~~~~~i~~--~~ 80 (218)
T cd03286 20 PNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMAQMGM-DV----PAKSM------------RLSLVDRIFT--RI 80 (218)
T ss_pred EeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHHHHcCC-cc----Ccccc------------EeccccEEEE--ec
Confidence 56778888889999999999999999999987753221 121 11 00000 0001111111 11
Q ss_pred cCCCCccccccccCH--HHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH--HHHHHHHHHcCCC-cEEEEEEecCHH
Q psy2071 146 EDCSSPKTVLKYMTD--GMLLREGMSDPMLENYQVILLDEAHERTLATDILM--GVLKEVIKQRADL-KLVIMSATLDAG 220 (302)
Q Consensus 146 ~~~~~~~~~~~~lS~--G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~--~~l~~ll~~~~~~-~~~ii~~thd~~ 220 (302)
. ..+.....+|. .+.+++.-....+.+|+++|||| +..|+++.. .+...+++.+.+. +.+++++||+.+
T Consensus 81 ~---~~d~~~~~~StF~~e~~~~~~il~~~~~~sLvLlDE---~~~Gt~~~dg~~la~ail~~L~~~~~~~~i~~TH~~e 154 (218)
T cd03286 81 G---ARDDIMKGESTFMVELSETANILRHATPDSLVILDE---LGRGTSTHDGYAIAHAVLEYLVKKVKCLTLFSTHYHS 154 (218)
T ss_pred C---cccccccCcchHHHHHHHHHHHHHhCCCCeEEEEec---ccCCCCchHHHHHHHHHHHHHHHhcCCcEEEEeccHH
Confidence 1 11112222332 23344433333458999999999 887777554 3333334443333 789999999999
Q ss_pred HHHhhcc
Q psy2071 221 KFQQYFD 227 (302)
Q Consensus 221 ~~~~~~d 227 (302)
.+..++.
T Consensus 155 l~~~~~~ 161 (218)
T cd03286 155 LCDEFHE 161 (218)
T ss_pred HHHHhhc
Confidence 9888763
No 440
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.12 E-value=3.8e-11 Score=117.14 Aligned_cols=72 Identities=15% Similarity=0.123 Sum_probs=60.6
Q ss_pred cCHHHHHHHhccccCCCCC---cEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeee
Q psy2071 158 MTDGMLLREGMSDPMLENY---QVILLDEAHERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMN 233 (302)
Q Consensus 158 lS~G~~qr~~la~al~~~p---~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~ 233 (302)
||||+.||+-||.-|.... .+.|||| ||.||-..- ..|.+++.++-+.|-|||++.|+++.+. .||.|+=|-
T Consensus 823 LSGGEaQRvKLA~EL~k~~tg~TlYiLDE---PTTGLH~~Di~kLl~VL~rLvd~GnTViVIEHNLdVIk-~AD~IIDLG 898 (935)
T COG0178 823 LSGGEAQRVKLAKELSKRSTGKTLYILDE---PTTGLHFDDIKKLLEVLHRLVDKGNTVIVIEHNLDVIK-TADWIIDLG 898 (935)
T ss_pred ccchHHHHHHHHHHHhhccCCCeEEEeCC---CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecccceEe-ecCEEEEcC
Confidence 9999999999999988776 8999999 999998654 6677777777788999999999998774 677665544
No 441
>COG3910 Predicted ATPase [General function prediction only]
Probab=99.08 E-value=2.4e-10 Score=93.81 Aligned_cols=150 Identities=21% Similarity=0.221 Sum_probs=86.1
Q ss_pred cCCChhHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccc--cCCCEEEeecC-chhhhHHHHHHHhhhhhcccc
Q psy2071 59 ITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSK--SVGAKAVACTQ-PRRVAAMSVAQRVSEEMDCQL 135 (302)
Q Consensus 59 ~~lp~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~--~~G~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~ 135 (302)
.++|+++.++. .+.+ .-.|+.|+|+||+||||||..|+-.... ..|...+.+.- ....+....+..+ ....
T Consensus 21 ~slPa~r~l~~-~LeF-~apIT~i~GENGsGKSTLLEaiA~~~~~n~aGg~~n~~~~~~~s~s~l~~~~k~~---~~~k- 94 (233)
T COG3910 21 FSLPAFRHLEE-RLEF-RAPITFITGENGSGKSTLLEAIAAGMGFNAAGGGKNFKGELDASHSALVDYAKLH---KRKK- 94 (233)
T ss_pred ccchHHHhhhh-hccc-cCceEEEEcCCCccHHHHHHHHHhhccccccCCCcCcCcccccccchHHHhHHHh---hcCC-
Confidence 45788777764 3333 4569999999999999999998644322 22333222211 1100100001000 0000
Q ss_pred ccceeeeeeecCCC--------------CccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHHH-HHHH
Q psy2071 136 GQEVGYSIRFEDCS--------------SPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILMG-VLKE 200 (302)
Q Consensus 136 ~~~v~~~~~~~~~~--------------~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~~-~l~~ 200 (302)
-..+|.+|-+... .....+...|.|+----.+.+. +.+-.+.|||| |-++|.+..+ .+..
T Consensus 95 -~~~g~FlRAEs~yn~as~~De~~~e~~~~~~sLh~~SHGEsf~~i~~~r-f~~~GiYiLDE---PEa~LSp~RQlella 169 (233)
T COG3910 95 -PPIGFFLRAESFYNVASYLDEADGEANYGGRSLHHMSHGESFLAIFHNR-FNGQGIYILDE---PEAALSPSRQLELLA 169 (233)
T ss_pred -CCcceEEehhHHHHHHHHHHhhhhhcccCCcchhhhccchHHHHHHHHH-hccCceEEecC---ccccCCHHHHHHHHH
Confidence 0123333221110 0122345688887655444444 46778999999 9999998773 4666
Q ss_pred HHHHcCCCcEEEEEEecCH
Q psy2071 201 VIKQRADLKLVIMSATLDA 219 (302)
Q Consensus 201 ll~~~~~~~~~ii~~thd~ 219 (302)
++..+.+.|.-+|++||..
T Consensus 170 ~l~~la~sGaQ~IiATHSP 188 (233)
T COG3910 170 ILRDLADSGAQIIIATHSP 188 (233)
T ss_pred HHHHHHhcCCeEEEEecCh
Confidence 6777777789999999975
No 442
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=99.08 E-value=1.8e-10 Score=99.46 Aligned_cols=72 Identities=14% Similarity=0.099 Sum_probs=48.9
Q ss_pred ccCHHHHHHHhcccc----CCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCe
Q psy2071 157 YMTDGMLLREGMSDP----MLENYQVILLDEAHERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPL 231 (302)
Q Consensus 157 ~lS~G~~qr~~la~a----l~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~ 231 (302)
.|||||+..++||.- -....+++|||| +.+++|... ..+.+++....+. .-++++||+.. +...+|+.+.
T Consensus 136 ~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDE---vd~~LD~~~~~~l~~~l~~~~~~-~Q~ii~Th~~~-~~~~a~~~~~ 210 (220)
T PF02463_consen 136 FLSGGEKSLVALALLLALQRYKPSPFLILDE---VDAALDEQNRKRLADLLKELSKQ-SQFIITTHNPE-MFEDADKLIG 210 (220)
T ss_dssp GS-HHHHHHHHHHHHHHHHTCS--SEEEEES---TTTTS-HHHHHHHHHHHHHHTTT-SEEEEE-S-HH-HHTT-SEEEE
T ss_pred ccccccccccccccccccccccccccccccc---ccccccccccccccccccccccc-ccccccccccc-cccccccccc
Confidence 699999999887643 356788999999 999999877 7788888876543 55677799965 5566777665
Q ss_pred ee
Q psy2071 232 MN 233 (302)
Q Consensus 232 l~ 233 (302)
+.
T Consensus 211 v~ 212 (220)
T PF02463_consen 211 VT 212 (220)
T ss_dssp EE
T ss_pred cc
Confidence 55
No 443
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=99.04 E-value=4.5e-10 Score=101.93 Aligned_cols=132 Identities=18% Similarity=0.115 Sum_probs=79.4
Q ss_pred HHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhhccccccceeeeeeecC
Q psy2071 68 TEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRFED 147 (302)
Q Consensus 68 ~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 147 (302)
.=+.+.+..|+.++|+|+|||||||+++++++++++..|.+.+.. +.... ......+.+..+...
T Consensus 135 ~~l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied--~~El~-------------~~~~~~~~l~~~~~~ 199 (308)
T TIGR02788 135 EFLRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIED--TREIF-------------LPHPNYVHLFYSKGG 199 (308)
T ss_pred HHHHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEcC--ccccC-------------CCCCCEEEEEecCCC
Confidence 346778999999999999999999999999999988777665532 11110 000011111111100
Q ss_pred CCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEEEecCHHHHHhhcc
Q psy2071 148 CSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILMGVLKEVIKQRADLKLVIMSATLDAGKFQQYFD 227 (302)
Q Consensus 148 ~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d 227 (302)
.....++- .-.+..+|-.+|++|++|| +.. ... .++++.......++++++|..+ +....+
T Consensus 200 -----~~~~~~~~----~~~l~~~Lr~~pd~ii~gE---~r~--~e~----~~~l~a~~~g~~~~i~T~Ha~~-~~~~~~ 260 (308)
T TIGR02788 200 -----QGLAKVTP----KDLLQSCLRMRPDRIILGE---LRG--DEA----FDFIRAVNTGHPGSITTLHAGS-PEEAFE 260 (308)
T ss_pred -----CCcCccCH----HHHHHHHhcCCCCeEEEec---cCC--HHH----HHHHHHHhcCCCeEEEEEeCCC-HHHHHH
Confidence 00111222 2345567788999999999 553 122 2333333322335678889887 555688
Q ss_pred CCCeee
Q psy2071 228 NAPLMN 233 (302)
Q Consensus 228 ~~~~l~ 233 (302)
|+..+.
T Consensus 261 Rl~~l~ 266 (308)
T TIGR02788 261 QLALMV 266 (308)
T ss_pred HHHHHh
Confidence 887664
No 444
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.02 E-value=2.3e-10 Score=98.44 Aligned_cols=43 Identities=5% Similarity=0.060 Sum_probs=37.7
Q ss_pred HHHHHhccccCCCCCcEEEEcCCCCCC-----cchHHHH-HHHHHHHHHcCC
Q psy2071 162 MLLREGMSDPMLENYQVILLDEAHERT-----LATDILM-GVLKEVIKQRAD 207 (302)
Q Consensus 162 ~~qr~~la~al~~~p~lliLDE~~~p~-----~~lD~~~-~~l~~ll~~~~~ 207 (302)
+++++.||++++.+|+++++|| |+ .++|+.. ..+.+++...+.
T Consensus 157 ~~~f~~ia~~l~~~p~~~~ldE---p~~~~~~~~ld~~~~~~~~~~~~~~~~ 205 (215)
T PTZ00132 157 EKPFLWLARRLTNDPNLVFVGA---PALAPEEIQIDPELVAQAEKELQAAAN 205 (215)
T ss_pred HHHHHHHHHHHhhcccceecCC---cccCCCccccCHHHHHHHHHHHHHHhh
Confidence 7788999999999999999999 99 9999888 778888776543
No 445
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=99.02 E-value=6.5e-10 Score=90.45 Aligned_cols=130 Identities=16% Similarity=0.051 Sum_probs=76.5
Q ss_pred EEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhhccccccceeeeeeecCCCCcccccccc
Q psy2071 79 CIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRFEDCSSPKTVLKYM 158 (302)
Q Consensus 79 i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l 158 (302)
+++|.|+||+||||++..+++...+..+.+.+............... .........+..+... .....
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~---~~~~~~~~~~~~~~~~---------~~~~~ 68 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLI---GESLKGALDNLIIVFA---------TADDP 68 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHh---hhhhccccccEEEEEc---------CCCCC
Confidence 47899999999999999999988766666666554432211111100 0000000111111100 00112
Q ss_pred CHHHHHHHhccccCCCCCcEEEEcCCCCCCcch----------HHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHH
Q psy2071 159 TDGMLLREGMSDPMLENYQVILLDEAHERTLAT----------DILM-GVLKEVIKQRADLKLVIMSATLDAGKFQ 223 (302)
Q Consensus 159 S~G~~qr~~la~al~~~p~lliLDE~~~p~~~l----------D~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~ 223 (302)
+.+..++...+.+...+|+++|+|| ++.-. +... ..+.++....++.++++++++|......
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~lviDe---~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~~~~ 141 (165)
T cd01120 69 AAARLLSKAERLRERGGDDLIILDE---LTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQVPSGDK 141 (165)
T ss_pred cHHHHHHHHHHHHhCCCCEEEEEEc---HHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEecCCccc
Confidence 3344556677888889999999999 55332 2233 5666776666667999999999765443
No 446
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=98.99 E-value=7e-10 Score=108.68 Aligned_cols=73 Identities=12% Similarity=0.084 Sum_probs=64.3
Q ss_pred cccCHHHHHHHhccccCCCC----CcEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCC
Q psy2071 156 KYMTDGMLLREGMSDPMLEN----YQVILLDEAHERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAP 230 (302)
Q Consensus 156 ~~lS~G~~qr~~la~al~~~----p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~ 230 (302)
..+||||++|+++|++++.. |+++|+|| |++++|... ..+.+++..... +.+||++||++..+. +||+++
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDE---p~~gld~~~~~~~~~~l~~l~~-~~~vi~iTH~~~~~~-~ad~~~ 513 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDE---VDVGVSGETAQAIAKKLAQLSE-RHQVLCVTHLPQVAA-HADAHF 513 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEEC---CCCCCCHHHHHHHHHHHHHHhc-CCEEEEEEChHHHHH-hcCeEE
Confidence 57999999999999999875 69999999 999999877 777888877654 789999999998775 899999
Q ss_pred eee
Q psy2071 231 LMN 233 (302)
Q Consensus 231 ~l~ 233 (302)
+|+
T Consensus 514 ~l~ 516 (563)
T TIGR00634 514 KVE 516 (563)
T ss_pred EEE
Confidence 998
No 447
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.96 E-value=7.8e-10 Score=115.64 Aligned_cols=83 Identities=7% Similarity=-0.068 Sum_probs=72.5
Q ss_pred CccccccccCHHHHHHHhccccCCC----------CCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecC
Q psy2071 150 SPKTVLKYMTDGMLLREGMSDPMLE----------NYQVILLDEAHERTLATDILM-GVLKEVIKQRADLKLVIMSATLD 218 (302)
Q Consensus 150 ~~~~~~~~lS~G~~qr~~la~al~~----------~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd 218 (302)
...+.+..|||||++|++||++|+. +|++||||| |+.++|+.. ..+.+++......|.+|+++||+
T Consensus 943 ~~~r~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDE---p~~~LD~~~~~~~~~~l~~l~~~g~~i~iisH~ 1019 (1042)
T TIGR00618 943 GSVRPSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDE---GFGSLDEDSLDRAIGILDAIREGSKMIGIISHV 1019 (1042)
T ss_pred CCcCCcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecC---CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCc
Confidence 4456778999999999999999985 799999999 999999877 77778887665668899999999
Q ss_pred HHHHHhhccCCCeeeec
Q psy2071 219 AGKFQQYFDNAPLMNVP 235 (302)
Q Consensus 219 ~~~~~~~~d~~~~l~i~ 235 (302)
.+....++++|.|++..
T Consensus 1020 ~~~~~~~~~~i~v~~~~ 1036 (1042)
T TIGR00618 1020 PEFRERIPHRILVKKTN 1036 (1042)
T ss_pred HHHHHhhCCEEEEEECC
Confidence 99999999999999843
No 448
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=98.96 E-value=6.5e-10 Score=96.63 Aligned_cols=65 Identities=15% Similarity=0.147 Sum_probs=46.5
Q ss_pred ccccCHHHHHHHhccccCCCCC---cEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHH
Q psy2071 155 LKYMTDGMLLREGMSDPMLENY---QVILLDEAHERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKF 222 (302)
Q Consensus 155 ~~~lS~G~~qr~~la~al~~~p---~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~ 222 (302)
...+|.|+++.+.++..+...+ .++++|| |..++.|.+ ..+.+++......+.-++++||+...+
T Consensus 234 ~~~~S~G~~~~l~l~~~l~~~~~~~~illiDE---pE~~LHp~~q~~l~~~l~~~~~~~~QviitTHSp~il 302 (303)
T PF13304_consen 234 LSSLSSGEKRLLSLLSLLLSAKKNGSILLIDE---PENHLHPSWQRKLIELLKELSKKNIQVIITTHSPFIL 302 (303)
T ss_dssp GS---HHHHHHHHHHHHHHTTTTT-SEEEEES---SSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES-GGG-
T ss_pred eccCCHHHHHHHHHHHHHhCcCCCCeEEEecC---CcCCCCHHHHHHHHHHHHhhCccCCEEEEeCccchhc
Confidence 3447999999987766655544 9999999 999999887 666677766544567889999987543
No 449
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.93 E-value=1.3e-09 Score=95.10 Aligned_cols=151 Identities=15% Similarity=0.100 Sum_probs=81.4
Q ss_pred HHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhhccccccce--eeeeeecCCCC
Q psy2071 73 LLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEV--GYSIRFEDCSS 150 (302)
Q Consensus 73 ~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~ 150 (302)
=+++|.++.|.|++||||||+..+++-......+.+.+....-............ +....+.+ ++. .+....
T Consensus 21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~~~~~~~~~~~~----g~~~~~~~~~g~l-~i~~~~- 94 (234)
T PRK06067 21 GIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENTSKSYLKQMESV----KIDISDFFLWGYL-RIFPLN- 94 (234)
T ss_pred CCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHHHHHC----CCChhHHHhCCCc-eEEecc-
Confidence 4678999999999999999999888533222233444444432211211111111 11111111 110 010000
Q ss_pred ccccccccCHHHHHHHhccccCCC--CCcEEEEcCCCCCCcchHHH----HHHHHHHHHHcCCCcEEEEEEecCHHH---
Q psy2071 151 PKTVLKYMTDGMLLREGMSDPMLE--NYQVILLDEAHERTLATDIL----MGVLKEVIKQRADLKLVIMSATLDAGK--- 221 (302)
Q Consensus 151 ~~~~~~~lS~G~~qr~~la~al~~--~p~lliLDE~~~p~~~lD~~----~~~l~~ll~~~~~~~~~ii~~thd~~~--- 221 (302)
.......+.++.+.+.....++. +|+++++|| ++..+|.. ...+...+....+.+.|+++++|+...
T Consensus 95 -~~~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs---~t~~~~~~~~~~~~~~l~~l~~l~~~g~tvllt~~~~~~~~~ 170 (234)
T PRK06067 95 -TEGFEWNSTLANKLLELIIEFIKSKREDVIIIDS---LTIFATYAEEDDILNFLTEAKNLVDLGKTILITLHPYAFSEE 170 (234)
T ss_pred -ccccccCcchHHHHHHHHHHHHHhcCCCEEEEec---HHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcCCHH
Confidence 01123345677777776666665 999999999 77443321 112222333334457788888886543
Q ss_pred ----HHhhccCCCeee
Q psy2071 222 ----FQQYFDNAPLMN 233 (302)
Q Consensus 222 ----~~~~~d~~~~l~ 233 (302)
+..++|.++.|+
T Consensus 171 ~~~~~~~l~DgvI~L~ 186 (234)
T PRK06067 171 LLSRIRSICDVYLKLR 186 (234)
T ss_pred HHHHHHhheEEEEEEE
Confidence 566677776666
No 450
>PRK10869 recombination and repair protein; Provisional
Probab=98.89 E-value=2.6e-09 Score=104.09 Aligned_cols=73 Identities=14% Similarity=0.147 Sum_probs=63.5
Q ss_pred cccCHHHHHHHhccccCCC----CCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCC
Q psy2071 156 KYMTDGMLLREGMSDPMLE----NYQVILLDEAHERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAP 230 (302)
Q Consensus 156 ~~lS~G~~qr~~la~al~~----~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~ 230 (302)
+.+||||++|++||++++. +|+++|+|| |++++|... ..+.+++....+ +.+||++||++..+ .+||+.+
T Consensus 429 k~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DE---pd~gld~~~~~~v~~~l~~l~~-~~qvi~iTH~~~~~-~~ad~~~ 503 (553)
T PRK10869 429 KVASGGELSRIALAIQVITARKMETPALIFDE---VDVGISGPTAAVVGKLLRQLGE-STQVMCVTHLPQVA-GCGHQHF 503 (553)
T ss_pred hhCCHHHHHHHHHHHHHHhccCCCCCEEEEEC---CCCCCCHHHHHHHHHHHHHHhc-CCEEEEEecCHHHH-HhCCEEE
Confidence 4599999999999999986 689999999 999999877 778888887654 58899999999866 7999998
Q ss_pred eee
Q psy2071 231 LMN 233 (302)
Q Consensus 231 ~l~ 233 (302)
++.
T Consensus 504 ~v~ 506 (553)
T PRK10869 504 FVS 506 (553)
T ss_pred EEe
Confidence 887
No 451
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.88 E-value=1.1e-09 Score=95.99 Aligned_cols=158 Identities=13% Similarity=0.104 Sum_probs=89.8
Q ss_pred HHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEE--EeecCchhhhHHH------------------------
Q psy2071 69 EFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKA--VACTQPRRVAAMS------------------------ 122 (302)
Q Consensus 69 ~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~--i~~~~~~~~~~~~------------------------ 122 (302)
|....+.+|+.++|+|++|||||||++.++.......+.+. +.....+......
T Consensus 8 d~~~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~ 87 (249)
T cd01128 8 DLFAPIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQV 87 (249)
T ss_pred eeecccCCCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHH
Confidence 34567889999999999999999999999987765533222 2212111111110
Q ss_pred --HHHHhhhhhccccccceeeeeeecCCC--Cc----cccccccCHHH--------HHHHhccccCCCCCcEEEEcCCCC
Q psy2071 123 --VAQRVSEEMDCQLGQEVGYSIRFEDCS--SP----KTVLKYMTDGM--------LLREGMSDPMLENYQVILLDEAHE 186 (302)
Q Consensus 123 --~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~----~~~~~~lS~G~--------~qr~~la~al~~~p~lliLDE~~~ 186 (302)
.....+..+. ..+.++...+.--... .. ...-..+|+|+ +||+++|++++.++++.+|
T Consensus 88 ~~~~~~~a~~~~-~~G~~vll~iDei~r~a~a~~ev~~~~G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l----- 161 (249)
T cd01128 88 AEMVLEKAKRLV-EHGKDVVILLDSITRLARAYNTVVPPSGKILSGGVDANALHKPKRFFGAARNIEEGGSLTII----- 161 (249)
T ss_pred HHHHHHHHHHHH-HCCCCEEEEEECHHHhhhhhhhccccCCCCCCCCcChhhhhhhHHHHHHhcCCCCCCceEEe-----
Confidence 1111111111 1122322222100000 00 11123479999 9999999999999999999
Q ss_pred CCcchHHHH---HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCc
Q psy2071 187 RTLATDILM---GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGR 237 (302)
Q Consensus 187 p~~~lD~~~---~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~ 237 (302)
+|..+|... ..+ +......+.+.|+.+|.+.... .++.|.+|. .|.
T Consensus 162 ~T~~~d~~~~~~~~i---~~~~~~~~~~~ivls~~la~~~-~~paI~vl~-s~s 210 (249)
T cd01128 162 ATALVDTGSRMDDVI---FEEFKGTGNMELVLDRRLAERR-IFPAIDILK-SGT 210 (249)
T ss_pred eeheecCCCcccchH---HHHHhcCCCcEEEEchHHhhCC-CCCeEEEcC-CCC
Confidence 566666211 122 2222323456777799987664 667888887 444
No 452
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=98.86 E-value=3.5e-09 Score=99.22 Aligned_cols=133 Identities=14% Similarity=0.122 Sum_probs=90.7
Q ss_pred HHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhhccccccceeeeeeec
Q psy2071 67 RTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRFE 146 (302)
Q Consensus 67 ~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 146 (302)
.+. .+.+.+|+.++|+|+||+|||||++++++...++.|.+.+.|...+... ..+....... .+.+.+-+
T Consensus 147 ID~-ll~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~gvI~~iGerg~ev~-----e~~~~~l~~~---gl~~tvvv- 216 (432)
T PRK06793 147 IDS-MLTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADINVISLVGERGREVK-----DFIRKELGEE---GMRKSVVV- 216 (432)
T ss_pred Eec-cceecCCcEEEEECCCCCChHHHHHHHhccCCCCeEEEEeCCCCcccHH-----HHHHHHhhhc---ccceeEEE-
Confidence 344 5899999999999999999999999999999998887777665543322 1111111110 01111111
Q ss_pred CCCCccccccccCHHHHHHHhccccCC-------CCCcEEEEcCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEEEecCH
Q psy2071 147 DCSSPKTVLKYMTDGMLLREGMSDPML-------ENYQVILLDEAHERTLATDILMGVLKEVIKQRADLKLVIMSATLDA 219 (302)
Q Consensus 147 ~~~~~~~~~~~lS~G~~qr~~la~al~-------~~p~lliLDE~~~p~~~lD~~~~~l~~ll~~~~~~~~~ii~~thd~ 219 (302)
......|.|++.|++.+.+.+ .++-+||+|+ +|...|.. ..+...+.+....|.+..+.||..
T Consensus 217 ------~~tsd~s~~~r~ra~~~a~~iAEyfr~~G~~VLlilDs---lTr~a~A~-reisl~~~e~p~~G~~~~~~s~l~ 286 (432)
T PRK06793 217 ------VATSDESHLMQLRAAKLATSIAEYFRDQGNNVLLMMDS---VTRFADAR-RSVDIAVKELPIGGKTLLMESYMK 286 (432)
T ss_pred ------EECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEecc---hHHHHHHH-HHHHHHhcCCCCCCeeeeeeccch
Confidence 122456889999998776655 7899999999 99999986 444445555554577777778743
No 453
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.83 E-value=7.7e-09 Score=87.05 Aligned_cols=46 Identities=20% Similarity=0.185 Sum_probs=40.5
Q ss_pred HHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEee
Q psy2071 67 RTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVAC 112 (302)
Q Consensus 67 ~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~ 112 (302)
.+-+.+.++.|++++|+|||||||||+++.++++++++.|.+.+.+
T Consensus 15 ~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied 60 (186)
T cd01130 15 AAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPDERIITIED 60 (186)
T ss_pred HHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECC
Confidence 4556778999999999999999999999999999998888777643
No 454
>PHA02562 46 endonuclease subunit; Provisional
Probab=98.82 E-value=2.8e-09 Score=104.55 Aligned_cols=78 Identities=18% Similarity=0.129 Sum_probs=64.6
Q ss_pred cccccCHHHHHHHhccccCC----------CCCcEEEEcCCCCCC-cchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHH
Q psy2071 154 VLKYMTDGMLLREGMSDPML----------ENYQVILLDEAHERT-LATDILM-GVLKEVIKQRADLKLVIMSATLDAGK 221 (302)
Q Consensus 154 ~~~~lS~G~~qr~~la~al~----------~~p~lliLDE~~~p~-~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~ 221 (302)
.+..||+||+||++||++|+ .+|+++|||| |+ .++|... ..+.+++... .+.+|+++||+.+.
T Consensus 465 ~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDE---p~~~~ld~~~~~~~~~~l~~~--~~~~iiiish~~~~ 539 (562)
T PHA02562 465 SYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDE---VFDGALDAEGTKALLSILDSL--KDTNVFVISHKDHD 539 (562)
T ss_pred ChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEec---ccCcccchhHHHHHHHHHHhC--CCCeEEEEECchhc
Confidence 55789999999999999887 5999999999 98 6899876 7777888776 37889999999655
Q ss_pred HHhhccCCCeeeecCc
Q psy2071 222 FQQYFDNAPLMNVPGR 237 (302)
Q Consensus 222 ~~~~~d~~~~l~i~g~ 237 (302)
. ..||++++|.-.|.
T Consensus 540 ~-~~~d~~~~l~~~~~ 554 (562)
T PHA02562 540 P-QKFDRHLKMEKVGR 554 (562)
T ss_pred h-hhhhcEEEEEEECC
Confidence 4 67899999884344
No 455
>PRK03918 chromosome segregation protein; Provisional
Probab=98.79 E-value=7.2e-09 Score=106.91 Aligned_cols=79 Identities=16% Similarity=0.189 Sum_probs=64.2
Q ss_pred cccccccCHHHHH------HHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHh
Q psy2071 152 KTVLKYMTDGMLL------REGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQ 224 (302)
Q Consensus 152 ~~~~~~lS~G~~q------r~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~ 224 (302)
...+..|||||++ |+++|++++.+|+++|||| |+.++|+.. ..+.+++......+.+||++||+.+ +..
T Consensus 783 ~~~~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDE---p~~~lD~~~~~~l~~~l~~~~~~~~~iiiith~~~-~~~ 858 (880)
T PRK03918 783 ERPLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDE---PTPFLDEERRRKLVDIMERYLRKIPQVIIVSHDEE-LKD 858 (880)
T ss_pred cCChhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeC---CCcccCHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHH
Confidence 3566789999999 4556678889999999999 999999877 6677777654444678999999987 567
Q ss_pred hccCCCeeee
Q psy2071 225 YFDNAPLMNV 234 (302)
Q Consensus 225 ~~d~~~~l~i 234 (302)
+||++++|.-
T Consensus 859 ~~d~~~~l~~ 868 (880)
T PRK03918 859 AADYVIRVSL 868 (880)
T ss_pred hCCeEEEEEe
Confidence 8999999983
No 456
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=98.79 E-value=1.2e-08 Score=96.36 Aligned_cols=150 Identities=12% Similarity=0.118 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhhcc-ccccceeeee
Q psy2071 65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDC-QLGQEVGYSI 143 (302)
Q Consensus 65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~ 143 (302)
.+.+++ +.+.+|++++|+|+||+|||||+++|++...++.|.+.+.|...+.+.... ...... .....+.+..
T Consensus 147 ~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~gvI~~~Gerg~ev~e~~-----~~~l~~~~l~r~v~vv~ 220 (438)
T PRK07721 147 RAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSADLNVIALIGERGREVREFI-----ERDLGPEGLKRSIVVVA 220 (438)
T ss_pred hhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEEecCCccHHHHH-----HhhcChhhhcCeEEEEE
Confidence 456777 999999999999999999999999999999999998888776654332110 000100 1122233222
Q ss_pred eecCCCCccccccccCHHHHHHHh-----ccccC--CCCCcEEEEc----------C----CCCC--CcchHHHH-HHHH
Q psy2071 144 RFEDCSSPKTVLKYMTDGMLLREG-----MSDPM--LENYQVILLD----------E----AHER--TLATDILM-GVLK 199 (302)
Q Consensus 144 ~~~~~~~~~~~~~~lS~G~~qr~~-----la~al--~~~p~lliLD----------E----~~~p--~~~lD~~~-~~l~ 199 (302)
.. .-|.+++.+.. +|--+ -.+-=+|++| | .++| +.++|+.. ..+.
T Consensus 221 ~~-----------~~~~~~r~~~~~~a~~iAEyfr~~g~~Vll~~Dsltr~A~A~rEisl~~ge~P~~~G~dp~~~~~l~ 289 (438)
T PRK07721 221 TS-----------DQPALMRIKGAYTATAIAEYFRDQGLNVMLMMDSVTRVAMAQREIGLAVGEPPTTKGYTPSVFAILP 289 (438)
T ss_pred CC-----------CCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEeChHHHHHHHHHHHHhcCCCCccccCCHHHHHHHH
Confidence 11 11223333321 11111 1222245666 1 2234 56888777 6788
Q ss_pred HHHHHcC--CCcE-----EEEEEecCHHHHHhhccCCCeee
Q psy2071 200 EVIKQRA--DLKL-----VIMSATLDAGKFQQYFDNAPLMN 233 (302)
Q Consensus 200 ~ll~~~~--~~~~-----~ii~~thd~~~~~~~~d~~~~l~ 233 (302)
+++++.. +.|. ||++.+||+++ .+||++..+.
T Consensus 290 ~ller~~~~~~GsIT~~~TVlv~~hdm~e--~i~d~v~~i~ 328 (438)
T PRK07721 290 KLLERTGTNASGSITAFYTVLVDGDDMNE--PIADTVRGIL 328 (438)
T ss_pred HHHHHhcCCCCCCeeeEEEEEEECCCCCc--hhhhhEEEec
Confidence 8887655 3574 89999999985 8999998876
No 457
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.78 E-value=2.7e-08 Score=78.13 Aligned_cols=117 Identities=20% Similarity=0.152 Sum_probs=65.0
Q ss_pred hCCEEEEEccCCCCccchhhhhhhcccccC-CCEEEeecCchhhhHHHHHHHhhhhhccccccceeeeeeecCCCCcccc
Q psy2071 76 QNQCIVLVGETGSGKTTQIPQWCVEYSKSV-GAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRFEDCSSPKTV 154 (302)
Q Consensus 76 ~g~i~~liG~nGsGKSTll~~i~g~~~~~~-G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 154 (302)
.+..+.|+||+||||||+++.++..+.... +.+.+.+............ .......
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~ 57 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLL-----------------------LIIVGGK 57 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHH-----------------------hhhhhcc
Confidence 367899999999999999999998776544 3333333222111100000 0011112
Q ss_pred ccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHH------HHHHHcCCCcEEEEEEecC
Q psy2071 155 LKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLK------EVIKQRADLKLVIMSATLD 218 (302)
Q Consensus 155 ~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~------~ll~~~~~~~~~ii~~thd 218 (302)
.....+++..+..++.+--..|++|++||+ ..-.+... .... .........+..+|.++|.
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~viiiDei---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 125 (148)
T smart00382 58 KASGSGELRLRLALALARKLKPDVLILDEI---TSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTND 125 (148)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEECC---cccCCHHHHHHHHhhhhhHHHHHHHhcCCCEEEEEeCC
Confidence 234456666777777777767999999994 33333222 1111 1122223345677777774
No 458
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=98.76 E-value=1.2e-08 Score=86.68 Aligned_cols=120 Identities=16% Similarity=0.143 Sum_probs=66.2
Q ss_pred CEEEEEccCCCCccchhhhhhhccccc-CCCEEEeecCchhhhHHHHHHHhhhhhccccccceeeeeeecCCCCcccccc
Q psy2071 78 QCIVLVGETGSGKTTQIPQWCVEYSKS-VGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRFEDCSSPKTVLK 156 (302)
Q Consensus 78 ~i~~liG~nGsGKSTll~~i~g~~~~~-~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 156 (302)
.+++|.||+||||||+++.+++.+.+. .|.+....... ... .. ....+..+... ..+ ..
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~-E~~--------~~-------~~~~~i~q~~v--g~~--~~ 61 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPI-EFV--------HE-------SKRSLINQREV--GLD--TL 61 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCc-ccc--------cc-------Cccceeeeccc--CCC--cc
Confidence 368999999999999999988877644 34544433221 100 00 00011111000 000 01
Q ss_pred ccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeee
Q psy2071 157 YMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILMGVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMN 233 (302)
Q Consensus 157 ~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~ 233 (302)
.++ -+++++|..+|+++++|| +. |... +..+++. ...|..+++++|..+.. ..++|+..+.
T Consensus 62 ~~~------~~i~~aLr~~pd~ii~gE---ir---d~e~--~~~~l~~-a~~G~~v~~t~Ha~~~~-~~~~Rl~~l~ 122 (198)
T cd01131 62 SFE------NALKAALRQDPDVILVGE---MR---DLET--IRLALTA-AETGHLVMSTLHTNSAA-KTIDRIIDVF 122 (198)
T ss_pred CHH------HHHHHHhcCCcCEEEEcC---CC---CHHH--HHHHHHH-HHcCCEEEEEecCCcHH-HHHhHHHhhc
Confidence 111 246778888999999999 53 3221 1222221 23477889999987654 4567765553
No 459
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=98.76 E-value=2.4e-09 Score=100.47 Aligned_cols=49 Identities=20% Similarity=0.260 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCC-CEEEeecCc
Q psy2071 65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVG-AKAVACTQP 115 (302)
Q Consensus 65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G-~~~i~~~~~ 115 (302)
.+++++++.+++||+++|+|||||||||||+ +|+..|++| .+.+.|++.
T Consensus 20 ~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg~~~ 69 (504)
T TIGR03238 20 RILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDATHS 69 (504)
T ss_pred HHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECCEEC
Confidence 4688999999999999999999999999999 677788888 699988764
No 460
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=98.69 E-value=2.3e-08 Score=104.43 Aligned_cols=82 Identities=9% Similarity=-0.007 Sum_probs=67.7
Q ss_pred cccccccCHHHHHHHhccccCCC--------CCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHH
Q psy2071 152 KTVLKYMTDGMLLREGMSDPMLE--------NYQVILLDEAHERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKF 222 (302)
Q Consensus 152 ~~~~~~lS~G~~qr~~la~al~~--------~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~ 222 (302)
.+.+..|||||+++++||++|+. +|++||+|| |+.++|+.. ..+.+++..+.+.|.+|+++||..+..
T Consensus 944 ~r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDE---p~~~lD~~~~~~~~~~l~~l~~~g~~v~iisH~~~l~ 1020 (1047)
T PRK10246 944 VRDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDE---GFGTLDSETLDTALDALDALNASGKTIGVISHVEAMK 1020 (1047)
T ss_pred CCCcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeC---CCCcCCHHHHHHHHHHHHHHHHCCCEEEEEecHHHHH
Confidence 45678899999999999999985 899999999 999999887 778888887766799999999977666
Q ss_pred HhhccCCCeeeecC
Q psy2071 223 QQYFDNAPLMNVPG 236 (302)
Q Consensus 223 ~~~~d~~~~l~i~g 236 (302)
.++..++.|-..+|
T Consensus 1021 ~~i~~qi~V~k~~g 1034 (1047)
T PRK10246 1021 ERIPVQIKVKKING 1034 (1047)
T ss_pred HhccceEEEEECCC
Confidence 66665555555334
No 461
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=98.69 E-value=1.8e-09 Score=81.89 Aligned_cols=46 Identities=11% Similarity=0.115 Sum_probs=39.2
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchh
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRR 117 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~ 117 (302)
+++++++.+++|++++|+||||||||||++++. .|.+.+.+.+...
T Consensus 4 aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~------~G~i~~~g~di~~ 49 (107)
T cd00820 4 SLHGVLVDVYGKVGVLITGDSGIGKTELALELI------KRKHRLVGDDNVE 49 (107)
T ss_pred EEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh------CCeEEEeeEeHHH
Confidence 356778899999999999999999999999975 7888888876543
No 462
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.66 E-value=3.7e-08 Score=104.26 Aligned_cols=80 Identities=13% Similarity=0.122 Sum_probs=66.3
Q ss_pred ccccccccCHHHHHHHhccccC----CCCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhh
Q psy2071 151 PKTVLKYMTDGMLLREGMSDPM----LENYQVILLDEAHERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQY 225 (302)
Q Consensus 151 ~~~~~~~lS~G~~qr~~la~al----~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~ 225 (302)
.+..+..|||||+++++||+++ +..|+++|||| |+.++|+.. ..+.+++..... +.++|++||+++.+ .+
T Consensus 1083 ~~~~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE---~~~~ld~~~~~~~~~~~~~~~~-~~~~i~~sh~~~~~-~~ 1157 (1179)
T TIGR02168 1083 KNQNLSLLSGGEKALTALALLFAIFKVKPAPFCILDE---VDAPLDDANVERFANLLKEFSK-NTQFIVITHNKGTM-EV 1157 (1179)
T ss_pred ccccccccCccHHHHHHHHHHHHHHccCCCCeEEecC---ccccccHHHHHHHHHHHHHhcc-CCEEEEEEcChhHH-HH
Confidence 3456788999999999999987 46779999999 999999877 777788876654 36789999998865 68
Q ss_pred ccCCCeeeec
Q psy2071 226 FDNAPLMNVP 235 (302)
Q Consensus 226 ~d~~~~l~i~ 235 (302)
||+++.+...
T Consensus 1158 ~d~~~~~~~~ 1167 (1179)
T TIGR02168 1158 ADQLYGVTMQ 1167 (1179)
T ss_pred hhhHeeeeec
Confidence 9999888744
No 463
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.66 E-value=3.4e-07 Score=72.46 Aligned_cols=36 Identities=25% Similarity=0.262 Sum_probs=28.9
Q ss_pred HHHHHHHHHh--CCEEEEEccCCCCccchhhhhhhccc
Q psy2071 67 RTEFMTLLAQ--NQCIVLVGETGSGKTTQIPQWCVEYS 102 (302)
Q Consensus 67 ~~~i~~~i~~--g~i~~liG~nGsGKSTll~~i~g~~~ 102 (302)
...+...+.. +..+.|.||+|+||||+++.++..+.
T Consensus 7 ~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~ 44 (151)
T cd00009 7 IEALREALELPPPKNLLLYGPPGTGKTTLARAIANELF 44 (151)
T ss_pred HHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhh
Confidence 4445555555 88999999999999999999988764
No 464
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.64 E-value=2.4e-07 Score=84.22 Aligned_cols=127 Identities=22% Similarity=0.236 Sum_probs=75.2
Q ss_pred HhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhhccccccceeeeeeecCCCCcccc
Q psy2071 75 AQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRFEDCSSPKTV 154 (302)
Q Consensus 75 ~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 154 (302)
.+|++++++|||||||||++..+++.+.+..+.+.+.+.++.+.++..+........ .+.+....... +
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~------~i~~~~~~~~~---d-- 180 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERV------GVPVIAQKEGA---D-- 180 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHc------CceEEEeCCCC---C--
Confidence 368899999999999999999999999887789999888887766544433322222 22222221110 0
Q ss_pred ccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHHHHHHHHHHH-------cCCCcEEEEEEecC
Q psy2071 155 LKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILMGVLKEVIKQ-------RADLKLVIMSATLD 218 (302)
Q Consensus 155 ~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~~~l~~ll~~-------~~~~~~~ii~~thd 218 (302)
......-++..+...+++++|+|=++..... +..+..+..+.+. .....+.|+.+|..
T Consensus 181 -----pa~~v~~~l~~~~~~~~D~ViIDTaGr~~~~-~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g 245 (318)
T PRK10416 181 -----PASVAFDAIQAAKARGIDVLIIDTAGRLHNK-TNLMEELKKIKRVIKKADPDAPHEVLLVLDATTG 245 (318)
T ss_pred -----HHHHHHHHHHHHHhCCCCEEEEeCCCCCcCC-HHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCC
Confidence 0112222345556789999999995432222 2223344444321 12334566666643
No 465
>PRK01156 chromosome segregation protein; Provisional
Probab=98.64 E-value=4.5e-08 Score=101.21 Aligned_cols=80 Identities=14% Similarity=0.098 Sum_probs=63.8
Q ss_pred ccccccCHHHHHHHhc------cccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHHH-cCC-Cc-EEEEEEecCHHHH
Q psy2071 153 TVLKYMTDGMLLREGM------SDPMLENYQVILLDEAHERTLATDILM-GVLKEVIKQ-RAD-LK-LVIMSATLDAGKF 222 (302)
Q Consensus 153 ~~~~~lS~G~~qr~~l------a~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~-~~~-~~-~~ii~~thd~~~~ 222 (302)
..+..|||||++++++ |++++.+|++++||| ||.++|+.. ..+.+++.. ... .+ .+++++||+.+.+
T Consensus 797 ~~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDE---pt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~~~ 873 (895)
T PRK01156 797 EGIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDE---PTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRELL 873 (895)
T ss_pred CccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeC---CCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchHHH
Confidence 4567799999999865 589999999999999 999999876 666676653 222 23 4799999999866
Q ss_pred HhhccCCCeeeecC
Q psy2071 223 QQYFDNAPLMNVPG 236 (302)
Q Consensus 223 ~~~~d~~~~l~i~g 236 (302)
.+||+++.+...|
T Consensus 874 -~~~d~ii~~~~~~ 886 (895)
T PRK01156 874 -SVADVAYEVKKSS 886 (895)
T ss_pred -HhcCeEEEEEecC
Confidence 6899999998444
No 466
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.63 E-value=3.4e-08 Score=105.55 Aligned_cols=70 Identities=17% Similarity=0.143 Sum_probs=58.2
Q ss_pred cccCHHHHH------HHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHc-----CCCcEEEEEEecCHHHHH
Q psy2071 156 KYMTDGMLL------REGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVIKQR-----ADLKLVIMSATLDAGKFQ 223 (302)
Q Consensus 156 ~~lS~G~~q------r~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~-----~~~~~~ii~~thd~~~~~ 223 (302)
..||+||+| |++||++++.+|++||||| ||+++|+.. ..+...+... ...+.+||++|||++++.
T Consensus 1198 ~~lS~Gq~~~~~~~~rlala~~~~~~~~il~lDE---Pt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~~~~ 1274 (1311)
T TIGR00606 1198 GRCSAGQKVLASLIIRLALAETFCLNCGIIALDE---PTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDEDFVE 1274 (1311)
T ss_pred CCCchhhhhHhhHhHHHHHHHHHhcCCCEEEeeC---CcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHHHHH
Confidence 579999999 9999999999999999999 999999776 5454444432 234789999999999999
Q ss_pred hhccC
Q psy2071 224 QYFDN 228 (302)
Q Consensus 224 ~~~d~ 228 (302)
.+|..
T Consensus 1275 ~~~~~ 1279 (1311)
T TIGR00606 1275 LLGRS 1279 (1311)
T ss_pred HHhhc
Confidence 98853
No 467
>PRK05399 DNA mismatch repair protein MutS; Provisional
Probab=98.63 E-value=7.1e-08 Score=98.53 Aligned_cols=136 Identities=15% Similarity=0.132 Sum_probs=77.8
Q ss_pred HHHHHHHHhCCEEEEEccCCCCccchhhhhhhcc-cccCCCEEEeecCchhhhHHHHHHHhhhhhccccccceeeeeeec
Q psy2071 68 TEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEY-SKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRFE 146 (302)
Q Consensus 68 ~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~-~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 146 (302)
.++... ..+.++.|.|||++||||++++++... -...|. .+-+.. + ...+.+.+ ..+.
T Consensus 599 nd~~l~-~~~~~~iiTGpN~~GKSt~lr~v~l~~ilAq~G~-~VPa~~----a------------~i~~~d~I--~tri- 657 (854)
T PRK05399 599 NDCDLD-EERRLLLITGPNMAGKSTYMRQVALIVLLAQIGS-FVPAES----A------------RIGIVDRI--FTRI- 657 (854)
T ss_pred cceeeC-CCCcEEEEECCCCCCcHHHHHHHHHHHHHHhcCC-ceeccc----e------------EecccCee--eecc-
Confidence 344443 567899999999999999999986542 112231 111000 0 00111111 1111
Q ss_pred CCCCccccccccCHHHHHHHhccccC--CCCCcEEEEcCCCCCCcchHHHHHHHHHHHHHcCCC-cEEEEEEecCHHHHH
Q psy2071 147 DCSSPKTVLKYMTDGMLLREGMSDPM--LENYQVILLDEAHERTLATDILMGVLKEVIKQRADL-KLVIMSATLDAGKFQ 223 (302)
Q Consensus 147 ~~~~~~~~~~~lS~G~~qr~~la~al--~~~p~lliLDE~~~p~~~lD~~~~~l~~ll~~~~~~-~~~ii~~thd~~~~~ 223 (302)
...+.....+|.-|.....++..| +.+++++||||.+--|+..|.. .+...+++...+. +..++++||. .++.
T Consensus 658 --ga~d~i~~g~STF~~E~~~~~~il~~at~~sLvllDE~GrGTs~~dg~-aia~aile~l~~~~~~~~l~aTH~-~el~ 733 (854)
T PRK05399 658 --GASDDLASGRSTFMVEMTETANILNNATERSLVLLDEIGRGTSTYDGL-SIAWAVAEYLHDKIGAKTLFATHY-HELT 733 (854)
T ss_pred --CcccccccCcccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCCcchhH-HHHHHHHHHHHhcCCceEEEEech-HHHH
Confidence 123344455677666666665554 4589999999944447778833 3344444433333 5788999999 5566
Q ss_pred hhccC
Q psy2071 224 QYFDN 228 (302)
Q Consensus 224 ~~~d~ 228 (302)
.++++
T Consensus 734 ~l~~~ 738 (854)
T PRK05399 734 ELEEK 738 (854)
T ss_pred HHhhh
Confidence 67765
No 468
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=98.54 E-value=1.3e-08 Score=97.94 Aligned_cols=148 Identities=9% Similarity=0.097 Sum_probs=79.0
Q ss_pred HHHhCCEEEEEccCCCCccchhhhhh--hcccccCCCEEEeecCchhhhHHHHHHHhhhhhccccccceeeeeeecC---
Q psy2071 73 LLAQNQCIVLVGETGSGKTTQIPQWC--VEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRFED--- 147 (302)
Q Consensus 73 ~i~~g~i~~liG~nGsGKSTll~~i~--g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--- 147 (302)
=+.+|.++.|.|++|||||||..+++ |........+++...+.. ......+..+.........+...+.+....
T Consensus 17 Glp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~eE~~-~~l~~~~~~~G~~~~~~~~~g~l~~~~~~~~~~ 95 (484)
T TIGR02655 17 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFEESP-QDIIKNARSFGWDLQKLVDEGKLFILDASPDPE 95 (484)
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCH-HHHHHHHHHcCCCHHHHhhcCceEEEecCchhc
Confidence 36789999999999999999988874 333223334445443321 111122222111110000000001110000
Q ss_pred ----------CCCccccccccCHHHHHHHhccc--cCCCCCcEEEEcCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEEE
Q psy2071 148 ----------CSSPKTVLKYMTDGMLLREGMSD--PMLENYQVILLDEAHERTLATDILMGVLKEVIKQRADLKLVIMSA 215 (302)
Q Consensus 148 ----------~~~~~~~~~~lS~G~~qr~~la~--al~~~p~lliLDE~~~p~~~lD~~~~~l~~ll~~~~~~~~~ii~~ 215 (302)
....+.....+|+|++||+.|+. ++...|+.+ -.....+.++++..++.++|++++
T Consensus 96 ~~~~~~~~~l~~~l~~i~~~ls~g~~qRVvIDSl~aL~~~~~~~------------~~~r~~l~~Li~~L~~~g~TvLLt 163 (484)
T TIGR02655 96 GQDVVGGFDLSALIERINYAIRKYKAKRVSIDSVTAVFQQYDAV------------SVVRREIFRLVARLKQIGVTTVMT 163 (484)
T ss_pred cccccccCCHHHHHHHHHHHHHHhCCcEEEEeehhHhhhhcCch------------HHHHHHHHHHHHHHHHCCCEEEEE
Confidence 00112344568889999888884 443333221 011244556666656679999999
Q ss_pred ecCHHH--------H-HhhccCCCeee
Q psy2071 216 TLDAGK--------F-QQYFDNAPLMN 233 (302)
Q Consensus 216 thd~~~--------~-~~~~d~~~~l~ 233 (302)
||+.+. + ..+||.|+.|+
T Consensus 164 sh~~~~~~~~~~~~~~e~laDgVI~L~ 190 (484)
T TIGR02655 164 TERIEEYGPIARYGVEEFVSDNVVILR 190 (484)
T ss_pred ecCcccccccccCCceeEeeeeEEEEE
Confidence 998764 2 56788888775
No 469
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.54 E-value=5.1e-08 Score=92.72 Aligned_cols=59 Identities=24% Similarity=0.309 Sum_probs=44.9
Q ss_pred HHHhCCEEEEEccCCCCccchhhhhhhcccccCC--CEEEeecCchhhhHHHHHHHhhhhh
Q psy2071 73 LLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVG--AKAVACTQPRRVAAMSVAQRVSEEM 131 (302)
Q Consensus 73 ~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G--~~~i~~~~~~~~~~~~~~~~~~~~~ 131 (302)
.+..|.+++++|||||||||++..|++.+....| .+.+...+..++++..+....+...
T Consensus 252 ~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~Aeil 312 (484)
T PRK06995 252 LLDRGGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKIL 312 (484)
T ss_pred cccCCcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHh
Confidence 3567899999999999999999999998877766 4656666777777666555544443
No 470
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.46 E-value=1.8e-06 Score=76.53 Aligned_cols=62 Identities=23% Similarity=0.260 Sum_probs=42.3
Q ss_pred cccCCCCCCCCCChhhHHHHHhhcCCChhHHHHHHHHHHHhCC-EEEEEccCCCCccchhhhhhhcccc
Q psy2071 36 NLQVNPFTGYPYTPRYHELHRKRITLPVFEYRTEFMTLLAQNQ-CIVLVGETGSGKTTQIPQWCVEYSK 103 (302)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~l~~~r~~lp~~~~~~~i~~~i~~g~-i~~liG~nGsGKSTll~~i~g~~~~ 103 (302)
.+..+||...+...-+|.-.. -..+...+...++++. +++|+||+|+||||+++.++..+.+
T Consensus 7 ~l~~~pF~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~l~~~l~~ 69 (269)
T TIGR03015 7 GFTTKPFQLLPDPDFFYPSKG------HKRAMAYLEYGLSQREGFILITGEVGAGKTTLIRNLLKRLDQ 69 (269)
T ss_pred CCCCCCCCCCCCHHHhCCCHH------HHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHhcCC
Confidence 456678876554332222111 1235666677777765 8999999999999999999887664
No 471
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=98.45 E-value=4e-07 Score=83.90 Aligned_cols=37 Identities=27% Similarity=0.325 Sum_probs=29.3
Q ss_pred HHhCCEEEEEccCCCCccchhhhhhhccccc-CCCEEE
Q psy2071 74 LAQNQCIVLVGETGSGKTTQIPQWCVEYSKS-VGAKAV 110 (302)
Q Consensus 74 i~~g~i~~liG~nGsGKSTll~~i~g~~~~~-~G~~~i 110 (302)
..++.++.|.||+||||||+++.+++.+... .+.+..
T Consensus 119 ~~~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~t 156 (343)
T TIGR01420 119 ERPRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIIT 156 (343)
T ss_pred hhcCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEE
Confidence 4578899999999999999999998876533 455444
No 472
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.44 E-value=8.8e-07 Score=83.11 Aligned_cols=126 Identities=18% Similarity=0.203 Sum_probs=66.3
Q ss_pred HhCCEEEEEccCCCCccchhhhhhhcccccCC--CEEEeecCchhhhHHHHHHHhhhhhccccccceeeeeeecCCCCcc
Q psy2071 75 AQNQCIVLVGETGSGKTTQIPQWCVEYSKSVG--AKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRFEDCSSPK 152 (302)
Q Consensus 75 ~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 152 (302)
+.|++++|+||||+||||++..|++.+....| .+.+...+..+++...+....+..++ .... ...
T Consensus 189 ~~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilG--------vp~~--~v~--- 255 (420)
T PRK14721 189 EQGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLG--------VSVR--SIK--- 255 (420)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcC--------Ccee--cCC---
Confidence 57899999999999999999999886422222 23333445556665555444333221 1111 000
Q ss_pred ccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHHHHHHHHHHHc-CCCcEEEEEEecCHHHHH
Q psy2071 153 TVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILMGVLKEVIKQR-ADLKLVIMSATLDAGKFQ 223 (302)
Q Consensus 153 ~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~~~l~~ll~~~-~~~~~~ii~~thd~~~~~ 223 (302)
+ ..... .+..-+.+.+++++|.++.... .+.....+..+.... ......++.+|...+.+.
T Consensus 256 ------~-~~dl~--~al~~l~~~d~VLIDTaGrsqr-d~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~ 317 (420)
T PRK14721 256 ------D-IADLQ--LMLHELRGKHMVLIDTVGMSQR-DQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLD 317 (420)
T ss_pred ------C-HHHHH--HHHHHhcCCCEEEecCCCCCcc-hHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHH
Confidence 0 11111 1222366889999999643322 122335555543322 123456667775444433
No 473
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.43 E-value=3.5e-07 Score=84.53 Aligned_cols=127 Identities=18% Similarity=0.245 Sum_probs=72.2
Q ss_pred HHHHHhCCEEEEEccCCCCccchhhhhhhcccccCC--CEEEeecCchhhhHHHHHHHhhhhhccccccceeeeeeecCC
Q psy2071 71 MTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVG--AKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRFEDC 148 (302)
Q Consensus 71 ~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 148 (302)
...+++|.+++|+||||+||||++..|++.+....| .+.+...+..+.+...+....+..++ ..+...
T Consensus 131 ~~~~~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~g--------v~~~~~-- 200 (374)
T PRK14722 131 DALMERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILG--------VPVHAV-- 200 (374)
T ss_pred CccccCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcC--------CceEec--
Confidence 345778999999999999999999999887644444 45566666666666655554443322 111110
Q ss_pred CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHc-CCCcEEEEEEecCHHH
Q psy2071 149 SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVIKQR-ADLKLVIMSATLDAGK 221 (302)
Q Consensus 149 ~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~-~~~~~~ii~~thd~~~ 221 (302)
. +++...+ .+. -+.+.+++|+|+++.. ..|... +.+..+.... ......|+.+|...+.
T Consensus 201 ~---------~~~~l~~-~l~--~l~~~DlVLIDTaG~~--~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~ 261 (374)
T PRK14722 201 K---------DGGDLQL-ALA--ELRNKHMVLIDTIGMS--QRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDT 261 (374)
T ss_pred C---------CcccHHH-HHH--HhcCCCEEEEcCCCCC--cccHHHHHHHHHHhccCCCCeEEEEecCccChHH
Confidence 0 1111111 111 2467899999996543 334333 4444442211 1234666777765543
No 474
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=98.41 E-value=6.7e-07 Score=78.01 Aligned_cols=124 Identities=17% Similarity=0.162 Sum_probs=58.1
Q ss_pred CCEEEEEccCCCCccchhhhhhhcccc-cCCCEEEeecCchhhhHHHHHHHhhhhhccccccceeeeeeecCCCCccccc
Q psy2071 77 NQCIVLVGETGSGKTTQIPQWCVEYSK-SVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRFEDCSSPKTVL 155 (302)
Q Consensus 77 g~i~~liG~nGsGKSTll~~i~g~~~~-~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 155 (302)
+.++.|.|||.+||||++++++-..-- ..|. .+ | +........+.+.. ++.. .+...
T Consensus 43 ~~~~iiTGpN~sGKSt~lk~i~~~~ilaq~G~-~V----P------------A~~~~i~~~d~I~t--~~~~---~d~~~ 100 (235)
T PF00488_consen 43 SRIIIITGPNMSGKSTFLKQIGLIVILAQIGC-FV----P------------AESAEIPIFDRIFT--RIGD---DDSIE 100 (235)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHHHHHTTT---B----S------------SSEEEEE--SEEEE--EES------SST
T ss_pred eeEEEEeCCCccchhhHHHHHHHHhhhhhcCc-ee----e------------ecccccccccEEEe--eccc---ccccc
Confidence 358999999999999999998543211 1120 00 0 00001111122211 2211 12222
Q ss_pred cccCHHH--HHHHhccccCCCCCcEEEEcCCCCCCcchHHHHHHHHHHHHHcCC-CcEEEEEEecCHHHHH
Q psy2071 156 KYMTDGM--LLREGMSDPMLENYQVILLDEAHERTLATDILMGVLKEVIKQRAD-LKLVIMSATLDAGKFQ 223 (302)
Q Consensus 156 ~~lS~G~--~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~~~l~~ll~~~~~-~~~~ii~~thd~~~~~ 223 (302)
..+|.=+ .+++.-....+.+-.++|+||.+--|+..|-. .+...+++.+.+ .+..++++||+.+...
T Consensus 101 ~~~S~F~~E~~~~~~il~~~~~~sLvliDE~g~gT~~~eg~-ai~~aile~l~~~~~~~~i~~TH~~~l~~ 170 (235)
T PF00488_consen 101 SGLSTFMAEMKRLSSILRNATEKSLVLIDELGRGTNPEEGI-AIAIAILEYLLEKSGCFVIIATHFHELAE 170 (235)
T ss_dssp TSSSHHHHHHHHHHHHHHH--TTEEEEEESTTTTSSHHHHH-HHHHHHHHHHHHTTT-EEEEEES-GGGGG
T ss_pred cccccHHHhHHHHHhhhhhcccceeeecccccCCCChhHHH-HHHHHHHHHHHHhccccEEEEeccchhHH
Confidence 3344432 23322222225678899999954444444422 333334443333 4678899999887543
No 475
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.40 E-value=7.5e-07 Score=88.73 Aligned_cols=58 Identities=29% Similarity=0.361 Sum_probs=45.5
Q ss_pred HHhCCEEEEEccCCCCccchhhhhhhcccccCC--CEEEeecCchhhhHHHHHHHhhhhh
Q psy2071 74 LAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVG--AKAVACTQPRRVAAMSVAQRVSEEM 131 (302)
Q Consensus 74 i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G--~~~i~~~~~~~~~~~~~~~~~~~~~ 131 (302)
++.|++++++||||+||||++..|++.+....| .+.+...+..++++..+........
T Consensus 182 ~~~g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~ 241 (767)
T PRK14723 182 LAQGGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRIL 241 (767)
T ss_pred cCCCeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhC
Confidence 345889999999999999999999998866666 5677777777877766665555443
No 476
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.36 E-value=5.3e-07 Score=95.63 Aligned_cols=77 Identities=17% Similarity=0.156 Sum_probs=64.3
Q ss_pred ccccccCHHHHHHHhccccCCC----CCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhcc
Q psy2071 153 TVLKYMTDGMLLREGMSDPMLE----NYQVILLDEAHERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFD 227 (302)
Q Consensus 153 ~~~~~lS~G~~qr~~la~al~~----~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d 227 (302)
..+..|||||++++++|.+++. .|+++|||| |+.++|+.. ..+.+++..... +..+|++||+...+ .+||
T Consensus 1070 ~~~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE---~~~~ld~~~~~~~~~~l~~~~~-~~~~i~~t~~~~~~-~~~d 1144 (1164)
T TIGR02169 1070 QRLEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDE---VDMFLDGVNVERVAKLIREKAG-EAQFIVVSLRSPMI-EYAD 1144 (1164)
T ss_pred CcchhcCcchHHHHHHHHHHHHHhcCCCCcEEecc---cccccCHHHHHHHHHHHHHhcC-CCeEEEEECcHHHH-Hhcc
Confidence 4567899999999999999874 789999999 999999887 778888876654 36688889998755 8999
Q ss_pred CCCeeee
Q psy2071 228 NAPLMNV 234 (302)
Q Consensus 228 ~~~~l~i 234 (302)
+++.+..
T Consensus 1145 ~~~~~~~ 1151 (1164)
T TIGR02169 1145 RAIGVTM 1151 (1164)
T ss_pred eeEeEEE
Confidence 9988873
No 477
>PRK09183 transposase/IS protein; Provisional
Probab=98.36 E-value=9.5e-07 Score=78.22 Aligned_cols=120 Identities=19% Similarity=0.281 Sum_probs=67.1
Q ss_pred HHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCC-CEEEeecCchhhhHHHHHHHhhhhhccccccceeeeeeec
Q psy2071 68 TEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVG-AKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRFE 146 (302)
Q Consensus 68 ~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 146 (302)
.++.+ +++|+.++|+||+|+|||||..+|+..... .| .+.+.... .+...+.... .
T Consensus 94 ~~~~~-i~~~~~v~l~Gp~GtGKThLa~al~~~a~~-~G~~v~~~~~~-------~l~~~l~~a~--------------~ 150 (259)
T PRK09183 94 RSLSF-IERNENIVLLGPSGVGKTHLAIALGYEAVR-AGIKVRFTTAA-------DLLLQLSTAQ--------------R 150 (259)
T ss_pred hcCCc-hhcCCeEEEEeCCCCCHHHHHHHHHHHHHH-cCCeEEEEeHH-------HHHHHHHHHH--------------H
Confidence 33344 889999999999999999999998655433 34 44332110 0000000000 0
Q ss_pred CCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEEEecCHHHHHhhc
Q psy2071 147 DCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILMGVLKEVIKQRADLKLVIMSATLDAGKFQQYF 226 (302)
Q Consensus 147 ~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~ 226 (302)
. |...++ +. ..+..++++|+||.+.-...- .....+.+++..+.+.+.+|+.+....+.|...+
T Consensus 151 -----~--------~~~~~~-~~-~~~~~~dlLiiDdlg~~~~~~-~~~~~lf~li~~r~~~~s~iiTsn~~~~~w~~~~ 214 (259)
T PRK09183 151 -----Q--------GRYKTT-LQ-RGVMAPRLLIIDEIGYLPFSQ-EEANLFFQVIAKRYEKGSMILTSNLPFGQWDQTF 214 (259)
T ss_pred -----C--------CcHHHH-HH-HHhcCCCEEEEcccccCCCCh-HHHHHHHHHHHHHHhcCcEEEecCCCHHHHHHHh
Confidence 0 000010 00 113578999999965322111 2225677777766555677777667777777665
No 478
>PRK02224 chromosome segregation protein; Provisional
Probab=98.35 E-value=5e-07 Score=93.33 Aligned_cols=76 Identities=17% Similarity=0.142 Sum_probs=61.6
Q ss_pred cccccCHHHHH------HHhccccCCCC-----C-cEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcE-EEEEEecCH
Q psy2071 154 VLKYMTDGMLL------REGMSDPMLEN-----Y-QVILLDEAHERTLATDILM-GVLKEVIKQRADLKL-VIMSATLDA 219 (302)
Q Consensus 154 ~~~~lS~G~~q------r~~la~al~~~-----p-~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~-~ii~~thd~ 219 (302)
.+..||||+++ |++++++++.+ | .++|+|| |+.++|+.. ..+.+++......|. +||++||+.
T Consensus 778 ~~~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDE---p~~~lD~~~~~~~~~~l~~~~~~~~~qviiish~~ 854 (880)
T PRK02224 778 EPEQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDE---PTVFLDSGHVSQLVDLVESMRRLGVEQIVVVSHDD 854 (880)
T ss_pred ChhhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecC---CcccCCHHHHHHHHHHHHHHHhcCCCeEEEEECCh
Confidence 45789999999 88888888763 2 6799999 999999876 667777776655454 799999999
Q ss_pred HHHHhhccCCCeee
Q psy2071 220 GKFQQYFDNAPLMN 233 (302)
Q Consensus 220 ~~~~~~~d~~~~l~ 233 (302)
+.+. .||+++.|.
T Consensus 855 ~~~~-~ad~~~~~~ 867 (880)
T PRK02224 855 ELVG-AADDLVRVE 867 (880)
T ss_pred HHHH-hcCeeEEee
Confidence 8885 699999886
No 479
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.33 E-value=1.9e-06 Score=82.42 Aligned_cols=51 Identities=31% Similarity=0.430 Sum_probs=37.8
Q ss_pred HHHhCCEEEEEccCCCCccchhhhhhhcccccC--CCEEEeecCchhhhHHHH
Q psy2071 73 LLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSV--GAKAVACTQPRRVAAMSV 123 (302)
Q Consensus 73 ~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~--G~~~i~~~~~~~~~~~~~ 123 (302)
.+++|++++|+||+|+||||++..|+..+.... ..+.+...+..+.+...+
T Consensus 346 ~l~~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQ 398 (559)
T PRK12727 346 PLERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQ 398 (559)
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHH
Confidence 357899999999999999999999887654332 357676677666654433
No 480
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=98.32 E-value=1.4e-06 Score=80.37 Aligned_cols=137 Identities=26% Similarity=0.330 Sum_probs=92.6
Q ss_pred HhCCEEEEEccCCCCccchhhhhhhcccccCC--CEEEeecCchhhhHHHHHHHhhhhhccccccceeeeeeecCCCCcc
Q psy2071 75 AQNQCIVLVGETGSGKTTQIPQWCVEYSKSVG--AKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRFEDCSSPK 152 (302)
Q Consensus 75 ~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 152 (302)
.++.+++|+||+|.||||.|--|+..+....| .+-+.-++..|+++..+.+..+..++.++ .. .....
T Consensus 201 ~~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~--------~v--v~~~~ 270 (407)
T COG1419 201 EQKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPL--------EV--VYSPK 270 (407)
T ss_pred ccCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCce--------EE--ecCHH
Confidence 44899999999999999999888877663333 56677788899999999888887765432 11 11111
Q ss_pred ccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCC-cEEEEEEecCHHHHHhhccCCC
Q psy2071 153 TVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVIKQRADL-KLVIMSATLDAGKFQQYFDNAP 230 (302)
Q Consensus 153 ~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~-~~~ii~~thd~~~~~~~~d~~~ 230 (302)
=+..|...+.+.++|+.|=+|. +..|... ..+.+++..-.+. -.-++++|-.-+.+.++.++..
T Consensus 271 ------------el~~ai~~l~~~d~ILVDTaGr--s~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dlkei~~~f~ 336 (407)
T COG1419 271 ------------ELAEAIEALRDCDVILVDTAGR--SQYDKEKIEELKELIDVSHSIEVYLVLSATTKYEDLKEIIKQFS 336 (407)
T ss_pred ------------HHHHHHHHhhcCCEEEEeCCCC--CccCHHHHHHHHHHHhccccceEEEEEecCcchHHHHHHHHHhc
Confidence 1233444577889999999754 4566555 7777777654333 4567777876666666666544
Q ss_pred eeeec
Q psy2071 231 LMNVP 235 (302)
Q Consensus 231 ~l~i~ 235 (302)
.+.+.
T Consensus 337 ~~~i~ 341 (407)
T COG1419 337 LFPID 341 (407)
T ss_pred cCCcc
Confidence 44433
No 481
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=98.30 E-value=1.9e-06 Score=74.81 Aligned_cols=26 Identities=23% Similarity=0.406 Sum_probs=23.4
Q ss_pred HHHhCCEEEEEccCCCCccchhhhhh
Q psy2071 73 LLAQNQCIVLVGETGSGKTTQIPQWC 98 (302)
Q Consensus 73 ~i~~g~i~~liG~nGsGKSTll~~i~ 98 (302)
=+++|++++|.|++||||||+..+++
T Consensus 16 Gi~~G~~~~i~G~~G~GKT~l~~~~~ 41 (229)
T TIGR03881 16 GIPRGFFVAVTGEPGTGKTIFCLHFA 41 (229)
T ss_pred CCcCCeEEEEECCCCCChHHHHHHHH
Confidence 47899999999999999999988765
No 482
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=98.28 E-value=3e-06 Score=74.12 Aligned_cols=22 Identities=23% Similarity=0.326 Sum_probs=19.5
Q ss_pred CCEEEEEccCCCCccchhhhhh
Q psy2071 77 NQCIVLVGETGSGKTTQIPQWC 98 (302)
Q Consensus 77 g~i~~liG~nGsGKSTll~~i~ 98 (302)
|.+..|+||.|+|||||.-+++
T Consensus 1 g~~~ll~g~~G~GKS~lal~la 22 (239)
T cd01125 1 GYVSALVAPGGTGKSSLLLVLA 22 (239)
T ss_pred CceeEEEcCCCCCHHHHHHHHH
Confidence 6788999999999999987775
No 483
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.28 E-value=5.3e-06 Score=77.29 Aligned_cols=129 Identities=19% Similarity=0.285 Sum_probs=77.8
Q ss_pred CCEEEEEccCCCCccchhhhhhhccccc----CCCEEEeecCchhhhHHHHHHHhhhhhccccccceeeeeeecCCCCcc
Q psy2071 77 NQCIVLVGETGSGKTTQIPQWCVEYSKS----VGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRFEDCSSPK 152 (302)
Q Consensus 77 g~i~~liG~nGsGKSTll~~i~g~~~~~----~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 152 (302)
+.+++++||||+||||.+..++..+... ...+.+...++.+.++..+....+..++.. +....
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvp--------v~~~~----- 240 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIP--------VKAIE----- 240 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcc--------eEeeC-----
Confidence 4689999999999999998888765532 236777777777877776665555433222 11100
Q ss_pred ccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHHHHHHHHHHHcC-C-CcEEEEEEecCHHHHHhhccC
Q psy2071 153 TVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILMGVLKEVIKQRA-D-LKLVIMSATLDAGKFQQYFDN 228 (302)
Q Consensus 153 ~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~~~l~~ll~~~~-~-~~~~ii~~thd~~~~~~~~d~ 228 (302)
+.... .-.+.+ +.+.+++|+|+++........ +..+.+++.... . ...-|+.+|...+.+.+.+++
T Consensus 241 ------~~~~l-~~~L~~--~~~~DlVLIDTaGr~~~~~~~-l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~~~~ 308 (388)
T PRK12723 241 ------SFKDL-KEEITQ--SKDFDLVLVDTIGKSPKDFMK-LAEMKELLNACGRDAEFHLAVSSTTKTSDVKEIFHQ 308 (388)
T ss_pred ------cHHHH-HHHHHH--hCCCCEEEEcCCCCCccCHHH-HHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHH
Confidence 11111 112222 368999999997654433222 345566665432 2 356777787766666555544
No 484
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.28 E-value=5.2e-06 Score=76.80 Aligned_cols=50 Identities=26% Similarity=0.369 Sum_probs=37.1
Q ss_pred CCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHH
Q psy2071 77 NQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQR 126 (302)
Q Consensus 77 g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~ 126 (302)
+.+++|+|||||||||++..|++.+......+.+...++.+.++..+...
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~ 290 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQD 290 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHH
Confidence 36899999999999999999988765332256666677777666555443
No 485
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=98.27 E-value=6.2e-07 Score=91.52 Aligned_cols=60 Identities=15% Similarity=0.135 Sum_probs=48.5
Q ss_pred cCCCCCcEEEEcCCCCCCcch-HHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHH---------hhccCCCeee
Q psy2071 171 PMLENYQVILLDEAHERTLAT-DILM-GVLKEVIKQRADLKLVIMSATLDAGKFQ---------QYFDNAPLMN 233 (302)
Q Consensus 171 al~~~p~lliLDE~~~p~~~l-D~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~---------~~~d~~~~l~ 233 (302)
.+..+|.++++|| |..++ |+.. ..+.++++..++.+.+++++||+++.+. +.|+..++|.
T Consensus 648 ~l~~~p~illlDE---~~~~L~d~~~~~~i~~~lk~~RK~~~~vil~Tq~~~d~~~s~~a~~i~~~~~t~i~L~ 718 (818)
T PRK13830 648 RLTGAPSLIILDE---AWLMLGHPVFRDKIREWLKVLRKANCAVVLATQSISDAERSGIIDVLKESCPTKICLP 718 (818)
T ss_pred hcCCCCcEEEEEC---chhhcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhcCchHHHHHhcCCeEEECC
Confidence 3568999999999 99999 5665 7788888766566789999999998886 5788777765
No 486
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.25 E-value=5.1e-06 Score=70.43 Aligned_cols=126 Identities=21% Similarity=0.289 Sum_probs=75.2
Q ss_pred CEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhhccccccceeeeeeecCCCCccccccc
Q psy2071 78 QCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRFEDCSSPKTVLKY 157 (302)
Q Consensus 78 ~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 157 (302)
.+++++||||+||||.+--|+..+.-..-.+.+...+..|.++..+.+..+..++..+.. ......
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~----------~~~~~~---- 67 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYV----------ARTESD---- 67 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEE----------SSTTSC----
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccch----------hhcchh----
Confidence 478999999999999998888777655447888888999999998888877765432111 111111
Q ss_pred cCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHH-HHHHHHHHHHcCC-CcEEEEEEecCHHH
Q psy2071 158 MTDGMLLREGMSDPMLENYQVILLDEAHERTLATDIL-MGVLKEVIKQRAD-LKLVIMSATLDAGK 221 (302)
Q Consensus 158 lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~-~~~l~~ll~~~~~-~~~~ii~~thd~~~ 221 (302)
.....+-++...--.+.+++|+|-++.. ..|.. ...+.++++.... .-..++.+|...+.
T Consensus 68 --~~~~~~~~l~~~~~~~~D~vlIDT~Gr~--~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~ 129 (196)
T PF00448_consen 68 --PAEIAREALEKFRKKGYDLVLIDTAGRS--PRDEELLEELKKLLEALNPDEVHLVLSATMGQED 129 (196)
T ss_dssp --HHHHHHHHHHHHHHTTSSEEEEEE-SSS--STHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHH
T ss_pred --hHHHHHHHHHHHhhcCCCEEEEecCCcc--hhhHHHHHHHHHHhhhcCCccceEEEecccChHH
Confidence 1111222222222356899999996543 23333 3566666665433 34555666654433
No 487
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.25 E-value=6.3e-07 Score=70.45 Aligned_cols=29 Identities=31% Similarity=0.486 Sum_probs=20.4
Q ss_pred HhCCEEEEEccCCCCccchhhhhhhcccc
Q psy2071 75 AQNQCIVLVGETGSGKTTQIPQWCVEYSK 103 (302)
Q Consensus 75 ~~g~i~~liG~nGsGKSTll~~i~g~~~~ 103 (302)
+.+.++.|.|++|+||||+++.++..+..
T Consensus 2 ~~~~~~~i~G~~G~GKT~~~~~~~~~~~~ 30 (131)
T PF13401_consen 2 QSQRILVISGPPGSGKTTLIKRLARQLNA 30 (131)
T ss_dssp -----EEEEE-TTSSHHHHHHHHHHHHHH
T ss_pred CCCcccEEEcCCCCCHHHHHHHHHHHhHH
Confidence 45678999999999999999999876643
No 488
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=98.22 E-value=1.6e-06 Score=82.61 Aligned_cols=138 Identities=14% Similarity=0.116 Sum_probs=74.0
Q ss_pred HHHhCCEEEEEccCCCCccchhhhhhhcccccCCCE-EEeecCchhhhHHHHHHHhhhhhccccccceeeeeeecCCCCc
Q psy2071 73 LLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAK-AVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRFEDCSSP 151 (302)
Q Consensus 73 ~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 151 (302)
=+.+|+++.|.|++|+|||||+.+++.......+.+ ++.+.+... .....+.++. .. .+++.+ ..
T Consensus 90 Gi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~-qi~~ra~rlg----~~-~~~l~~----~~---- 155 (454)
T TIGR00416 90 GIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQ-QIKMRAIRLG----LP-EPNLYV----LS---- 155 (454)
T ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHH-HHHHHHHHcC----CC-hHHeEE----cC----
Confidence 468999999999999999999999987665554554 455443321 1111111111 10 011110 00
Q ss_pred cccccccCHHHHHHHhccccCCCCCcEEEEcCCCC---CC----cc-hHHHHHHHHHHHHHcCCCcEEEEEEecCHHH--
Q psy2071 152 KTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHE---RT----LA-TDILMGVLKEVIKQRADLKLVIMSATLDAGK-- 221 (302)
Q Consensus 152 ~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~---p~----~~-lD~~~~~l~~ll~~~~~~~~~ii~~thd~~~-- 221 (302)
.+ +-. ...-.+ --.+|+++++|...- +. .+ .......+..+.+..++.++|+++++|....
T Consensus 156 e~-----~~~-~I~~~i---~~~~~~~vVIDSIq~l~~~~~~~~~g~~~q~r~~~~~L~~~ak~~giTvllt~hvtkeg~ 226 (454)
T TIGR00416 156 ET-----NWE-QICANI---EEENPQACVIDSIQTLYSPDISSAPGSVSQVRECTAELMRLAKTRGIAIFIVGHVTKEGS 226 (454)
T ss_pred CC-----CHH-HHHHHH---HhcCCcEEEEecchhhcccccccCCCCHHHHHHHHHHHHHHHHHhCCEEEEEeccccCCc
Confidence 01 111 111111 124799999998311 10 01 1112233333444345668999999996543
Q ss_pred ------HHhhccCCCeee
Q psy2071 222 ------FQQYFDNAPLMN 233 (302)
Q Consensus 222 ------~~~~~d~~~~l~ 233 (302)
+..++|.++.|+
T Consensus 227 ~aG~~~le~lvD~VI~Le 244 (454)
T TIGR00416 227 IAGPKVLEHMVDTVLYFE 244 (454)
T ss_pred cCCcccEeeeceEEEEEe
Confidence 567788888776
No 489
>COG4637 Predicted ATPase [General function prediction only]
Probab=98.22 E-value=4.9e-06 Score=73.87 Aligned_cols=69 Identities=17% Similarity=0.229 Sum_probs=54.4
Q ss_pred cCHHHHHHHhccccCCC--CCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCC
Q psy2071 158 MTDGMLLREGMSDPMLE--NYQVILLDEAHERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAP 230 (302)
Q Consensus 158 lS~G~~qr~~la~al~~--~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~ 230 (302)
||.|+.+-++++-+|++ .|.+++||| |-.+|-|-+ ..+-.++....+.+ -|+++||....+..+=-+..
T Consensus 271 LSDGTlRfl~l~t~Llsp~~p~ll~ldE---PE~sLHP~lL~~La~~~~sAak~s-Qv~VsTHS~rLl~~~e~~~v 342 (373)
T COG4637 271 LSDGTLRFLALATLLLSPRPPPLLLLDE---PETSLHPDLLPALAELMRSAAKRS-QVIVSTHSPRLLNAVEEHSV 342 (373)
T ss_pred ccccHHHHHHHHHHHcCCCCCceeEecC---cccccCHhHHHHHHHHHHHhhccc-eEEEEeCCHHHHhhccccce
Confidence 99999999999988876 589999999 999999766 66677776655444 67778999988876554443
No 490
>PRK13764 ATPase; Provisional
Probab=98.21 E-value=3.7e-06 Score=82.12 Aligned_cols=124 Identities=16% Similarity=0.255 Sum_probs=70.6
Q ss_pred HHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhhccccccceeeeeeecCCCCccc
Q psy2071 74 LAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRFEDCSSPKT 153 (302)
Q Consensus 74 i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 153 (302)
...+..+.|.|++||||||+++.++..+. ..|.+.+.-.++..... ...+ .++... .
T Consensus 254 ~~~~~~ILIsG~TGSGKTTll~AL~~~i~-~~~riV~TiEDp~El~~---------------~~~i---~q~~~~---~- 310 (602)
T PRK13764 254 EERAEGILIAGAPGAGKSTFAQALAEFYA-DMGKIVKTMESPRDLQV---------------PPEI---TQYSKL---E- 310 (602)
T ss_pred HhcCCEEEEECCCCCCHHHHHHHHHHHHh-hCCCEEEEECCCccccC---------------CCcc---eEEeec---c-
Confidence 45677899999999999999999988775 45654333333322110 0000 000000 0
Q ss_pred cccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEEEec---------------C
Q psy2071 154 VLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILMGVLKEVIKQRADLKLVIMSATL---------------D 218 (302)
Q Consensus 154 ~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~~~l~~ll~~~~~~~~~ii~~th---------------d 218 (302)
-+.....+ .+|..+|+++|+||. + ..-+ +..+..+ ...|..++.+-| +
T Consensus 311 ----~~~~~~~~----~lLR~rPD~IivGEi--R-d~Et--~~~~~~l----~~ag~GvigTlHA~sa~~Ai~Rl~~~v~ 373 (602)
T PRK13764 311 ----GSMEETAD----ILLLVRPDYTIYDEM--R-KTED--FKIFADM----RLAGVGMVGVVHATRPIDAIQRFIGRVE 373 (602)
T ss_pred ----ccHHHHHH----HHHhhCCCEEEECCC--C-CHHH--HHHHHHH----HHcCCeEEEEECCCCHHHHHHHHHhhhh
Confidence 00011111 126789999999993 2 2112 1222121 122555777778 7
Q ss_pred HHHHHhhccCCCeeeecCcC
Q psy2071 219 AGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 219 ~~~~~~~~d~~~~l~i~g~~ 238 (302)
+..+.+++|+++.++ .|+.
T Consensus 374 lg~i~~iID~IV~I~-~G~I 392 (602)
T PRK13764 374 LGMIPQIVDTVIFIE-DGEV 392 (602)
T ss_pred hchHHHhhcEEEEEe-CCEE
Confidence 888888999999888 6654
No 491
>PF09818 ABC_ATPase: Predicted ATPase of the ABC class; InterPro: IPR019195 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry consists of various predicted ABC transporter class ATPases.
Probab=98.20 E-value=2.4e-06 Score=79.33 Aligned_cols=143 Identities=14% Similarity=0.209 Sum_probs=93.1
Q ss_pred HHHhCCEEEEEccCCCCccchhhhh-hhccc--ccCCCEEEeec---------CchhhhHHHHHHHhhhhhcccccccee
Q psy2071 73 LLAQNQCIVLVGETGSGKTTQIPQW-CVEYS--KSVGAKAVACT---------QPRRVAAMSVAQRVSEEMDCQLGQEVG 140 (302)
Q Consensus 73 ~i~~g~i~~liG~nGsGKSTll~~i-~g~~~--~~~G~~~i~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~v~ 140 (302)
-|++| +++|+|.+=-||||||+.| .|.+. |..|.-++.-. +-+.+....+..++...+.
T Consensus 241 GIp~G-vTlIvGGGyHGKSTLL~Ale~GVYnHipGDGRE~VVT~~~avkirAEDGR~V~~vDISpFI~~LP~-------- 311 (448)
T PF09818_consen 241 GIPKG-VTLIVGGGYHGKSTLLEALERGVYNHIPGDGREFVVTDPDAVKIRAEDGRSVEGVDISPFINNLPG-------- 311 (448)
T ss_pred eeCCc-EEEEECCCCccHHHHHHHHHhcccCCCCCCCceEEEECCCceEEEecCCceEeCccchHHHhhCCC--------
Confidence 46788 9999999999999999998 35443 44554333211 1111111111111111110
Q ss_pred eeeeecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH--HHHHHHH--------------H-
Q psy2071 141 YSIRFEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM--GVLKEVI--------------K- 203 (302)
Q Consensus 141 ~~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~--~~l~~ll--------------~- 203 (302)
. .....-.-.+-||-+-|-..|..|+=...++||+|| +|+++..+. ..+..++ +
T Consensus 312 -----g-~dT~~FsT~~ASGSTSqAAnI~EAlE~Ga~~LLiDE---DtsATNfmiRD~rMq~Lv~k~kEPITPfidrvr~ 382 (448)
T PF09818_consen 312 -----G-KDTTCFSTENASGSTSQAANIMEALEAGARLLLIDE---DTSATNFMIRDERMQALVSKEKEPITPFIDRVRS 382 (448)
T ss_pred -----C-CCCCcccccCCCchHHHHHHHHHHHHcCCCEEEEcC---cccchheeehhHHHHHhhccCCCCcchHHHHHHH
Confidence 0 000111235579999999999999999999999999 999987655 3333333 2
Q ss_pred HcCCCcEEEEEEecCHHHHHhhccCCCeee
Q psy2071 204 QRADLKLVIMSATLDAGKFQQYFDNAPLMN 233 (302)
Q Consensus 204 ~~~~~~~~ii~~thd~~~~~~~~d~~~~l~ 233 (302)
.+.+.|+..|+++--...+...+|+|++|+
T Consensus 383 l~~~~GvStIlV~Ggsgdy~~vAD~Vi~Md 412 (448)
T PF09818_consen 383 LYEKLGVSTILVVGGSGDYFDVADRVIMMD 412 (448)
T ss_pred HHHHcCceEEEEeccchhhHhhCCEEEEec
Confidence 224568888888888888999999999998
No 492
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.20 E-value=3.5e-07 Score=77.60 Aligned_cols=34 Identities=24% Similarity=0.267 Sum_probs=27.3
Q ss_pred EEEEEccCCCCccchhhhhhhcccccCCCEEEeecC
Q psy2071 79 CIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQ 114 (302)
Q Consensus 79 i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~ 114 (302)
+++|+|++||||||+.++|.+++ ..|.+.+.+.+
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l--~~~~~~v~~~D 34 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL--GNPKVVIISQD 34 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh--CCCCeEEEEec
Confidence 58999999999999999999987 34556555544
No 493
>PRK14974 cell division protein FtsY; Provisional
Probab=98.19 E-value=1.4e-05 Score=73.11 Aligned_cols=53 Identities=28% Similarity=0.320 Sum_probs=39.4
Q ss_pred CCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhh
Q psy2071 77 NQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSE 129 (302)
Q Consensus 77 g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~ 129 (302)
+.+++++|+||+||||++..++..+......+.+...+..+.++..+....+.
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~ 192 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAE 192 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHH
Confidence 46899999999999999999988776544467676667666666555544444
No 494
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.17 E-value=1.2e-05 Score=75.97 Aligned_cols=128 Identities=23% Similarity=0.307 Sum_probs=71.8
Q ss_pred HhCCEEEEEccCCCCccchhhhhhhccc-ccCC-CEEEeecCchhhhHHHHHHHhhhhhccccccceeeeeeecCCCCcc
Q psy2071 75 AQNQCIVLVGETGSGKTTQIPQWCVEYS-KSVG-AKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRFEDCSSPK 152 (302)
Q Consensus 75 ~~g~i~~liG~nGsGKSTll~~i~g~~~-~~~G-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 152 (302)
.+|++++++||||+||||++-.|++.+. -..| .+.+...++.+.++..+....+...+ ..+.. ..
T Consensus 219 ~~~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~--------vp~~~--~~--- 285 (424)
T PRK05703 219 KQGGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMG--------IPVEV--VY--- 285 (424)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhC--------CceEc--cC---
Confidence 4578999999999999999988887665 2333 57777777766655444333332221 11110 00
Q ss_pred ccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHH-HcCC-CcEEEEEEecCHHHHHhhc
Q psy2071 153 TVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVIK-QRAD-LKLVIMSATLDAGKFQQYF 226 (302)
Q Consensus 153 ~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~-~~~~-~~~~ii~~thd~~~~~~~~ 226 (302)
+...... .+. -+.++++||+|.++. ...|... ..+.+++. .... ....|+.+|.....+.+++
T Consensus 286 ------~~~~l~~-~l~--~~~~~DlVlIDt~G~--~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~~ 351 (424)
T PRK05703 286 ------DPKELAK-ALE--QLRDCDVILIDTAGR--SQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLKDIY 351 (424)
T ss_pred ------CHHhHHH-HHH--HhCCCCEEEEeCCCC--CCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHHH
Confidence 1111111 111 134789999999643 3344333 55666665 2222 2366677767655554443
No 495
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=98.17 E-value=8.3e-07 Score=60.31 Aligned_cols=32 Identities=19% Similarity=0.253 Sum_probs=25.4
Q ss_pred HHHh-CCEEEEEccCCCCccchhhhhhhccccc
Q psy2071 73 LLAQ-NQCIVLVGETGSGKTTQIPQWCVEYSKS 104 (302)
Q Consensus 73 ~i~~-g~i~~liG~nGsGKSTll~~i~g~~~~~ 104 (302)
.+.+ |.++.|+|+|||||||++.++.-.+.+.
T Consensus 18 ~~~~~g~~tli~G~nGsGKSTllDAi~~~L~~~ 50 (62)
T PF13555_consen 18 DFDPRGDVTLITGPNGSGKSTLLDAIQTVLYGN 50 (62)
T ss_pred eecCCCcEEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 3443 5699999999999999999987665443
No 496
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=98.15 E-value=1.2e-06 Score=76.16 Aligned_cols=46 Identities=13% Similarity=0.106 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEE
Q psy2071 65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAV 110 (302)
Q Consensus 65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i 110 (302)
..+.++...-.+..+++|.|+||||||||++.+++.+++..|.+.+
T Consensus 21 ~~~~~~~~~~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v 66 (229)
T PRK09270 21 RRLAALQAEPQRRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAI 66 (229)
T ss_pred HHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHhhhccCCceE
Confidence 3344444333456799999999999999999999999999997544
No 497
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=98.15 E-value=2.1e-06 Score=81.20 Aligned_cols=50 Identities=18% Similarity=0.172 Sum_probs=41.3
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCch
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPR 116 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~ 116 (302)
+.+.+ +.+.+|+.++|+|+||+|||||+++|++...++.|.+...|...+
T Consensus 153 ~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~r~~ 202 (440)
T TIGR01026 153 SIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTEADVNVIALIGERGR 202 (440)
T ss_pred eeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCEEEEEEEeecch
Confidence 45666 899999999999999999999999999998887775555555443
No 498
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.15 E-value=2.3e-06 Score=82.10 Aligned_cols=54 Identities=15% Similarity=0.127 Sum_probs=48.2
Q ss_pred hHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchh
Q psy2071 64 FEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRR 117 (302)
Q Consensus 64 ~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~ 117 (302)
..+++.+...+..|++++|+|+|||||||+++.+.|+++|.+|...+.++....
T Consensus 197 ~~~~~al~laa~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s 250 (506)
T PRK09862 197 EQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILS 250 (506)
T ss_pred HHHHhhhheeccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhh
Confidence 346788999999999999999999999999999999999999999888776543
No 499
>PRK04296 thymidine kinase; Provisional
Probab=98.14 E-value=1.2e-05 Score=67.79 Aligned_cols=55 Identities=20% Similarity=0.232 Sum_probs=37.7
Q ss_pred CCCCcEEEEcCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEEEecC---------H-HHHHhhccCCCeee
Q psy2071 173 LENYQVILLDEAHERTLATDILMGVLKEVIKQRADLKLVIMSATLD---------A-GKFQQYFDNAPLMN 233 (302)
Q Consensus 173 ~~~p~lliLDE~~~p~~~lD~~~~~l~~ll~~~~~~~~~ii~~thd---------~-~~~~~~~d~~~~l~ 233 (302)
-.++++|++||++. ++. ..+.++++.....|++++++.++ . ..+..++|.|..|+
T Consensus 76 ~~~~dvviIDEaq~----l~~--~~v~~l~~~l~~~g~~vi~tgl~~~~~~~~f~~~~~L~~~aD~V~~l~ 140 (190)
T PRK04296 76 GEKIDCVLIDEAQF----LDK--EQVVQLAEVLDDLGIPVICYGLDTDFRGEPFEGSPYLLALADKVTELK 140 (190)
T ss_pred CCCCCEEEEEcccc----CCH--HHHHHHHHHHHHcCCeEEEEecCcccccCcCchHHHHHHhcCeEEEee
Confidence 45789999999743 211 22344544445568899988888 2 46778899988877
No 500
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.13 E-value=7.3e-06 Score=75.51 Aligned_cols=57 Identities=26% Similarity=0.289 Sum_probs=42.0
Q ss_pred HHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhh
Q psy2071 73 LLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSE 129 (302)
Q Consensus 73 ~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~ 129 (302)
.+.++++++++||+||||||++..++..+......+.+...++.+.++..+....+.
T Consensus 202 ~~~~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae 258 (407)
T PRK12726 202 DLSNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYAD 258 (407)
T ss_pred eecCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhh
Confidence 456799999999999999999999887654333357677777777766655544443
Done!