Query psy2071
Match_columns 302
No_of_seqs 446 out of 3662
Neff 8.7
Searched_HMMs 29240
Date Fri Aug 16 23:35:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2071.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2071hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fvq_A Fe(3+) IONS import ATP- 100.0 1.4E-37 4.8E-42 284.1 -5.7 180 64-247 17-230 (359)
2 3tui_C Methionine import ATP-b 100.0 2.5E-37 8.4E-42 282.7 -4.8 179 65-247 42-255 (366)
3 3rlf_A Maltose/maltodextrin im 100.0 1.6E-37 5.5E-42 285.6 -7.9 182 62-247 14-225 (381)
4 3gfo_A Cobalt import ATP-bindi 100.0 2.3E-36 7.9E-41 268.0 -3.1 169 66-238 23-222 (275)
5 4g1u_C Hemin import ATP-bindin 100.0 6.7E-36 2.3E-40 264.1 -0.9 170 65-238 25-226 (266)
6 3tif_A Uncharacterized ABC tra 100.0 2.4E-36 8.1E-41 262.5 -4.2 168 66-238 20-223 (235)
7 1z47_A CYSA, putative ABC-tran 100.0 3.1E-36 1.1E-40 275.3 -4.9 178 65-246 29-236 (355)
8 2olj_A Amino acid ABC transpor 100.0 1.3E-35 4.5E-40 261.6 -1.6 170 65-238 38-237 (263)
9 2pcj_A ABC transporter, lipopr 100.0 1.3E-35 4.6E-40 256.0 -1.6 168 66-238 19-217 (224)
10 1b0u_A Histidine permease; ABC 100.0 1.2E-35 4.2E-40 262.0 -3.2 169 66-238 21-231 (262)
11 2it1_A 362AA long hypothetical 100.0 4.4E-36 1.5E-40 275.1 -6.5 178 66-247 18-225 (362)
12 2yyz_A Sugar ABC transporter, 100.0 1.5E-35 5.1E-40 271.4 -3.3 178 66-247 18-225 (359)
13 1oxx_K GLCV, glucose, ABC tran 100.0 3.5E-36 1.2E-40 275.5 -8.4 177 66-246 20-231 (353)
14 1vpl_A ABC transporter, ATP-bi 100.0 3.1E-35 1.1E-39 258.4 -2.1 168 66-238 30-224 (256)
15 1v43_A Sugar-binding transport 100.0 2.2E-35 7.4E-40 271.5 -3.4 179 65-247 25-233 (372)
16 1g6h_A High-affinity branched- 100.0 3.3E-35 1.1E-39 258.7 -2.6 169 66-238 22-231 (257)
17 1ji0_A ABC transporter; ATP bi 100.0 3.1E-35 1.1E-39 256.4 -3.0 169 66-238 21-217 (240)
18 3d31_A Sulfate/molybdate ABC t 100.0 1.1E-35 3.8E-40 271.3 -6.0 178 66-247 15-219 (348)
19 1g29_1 MALK, maltose transport 100.0 2.1E-35 7.3E-40 271.9 -4.3 178 66-247 18-231 (372)
20 2onk_A Molybdate/tungstate ABC 100.0 8.4E-35 2.9E-39 253.3 -3.5 167 67-238 15-205 (240)
21 2ixe_A Antigen peptide transpo 100.0 1.5E-33 5E-38 249.8 2.2 168 66-238 34-234 (271)
22 2ihy_A ABC transporter, ATP-bi 100.0 1.6E-34 5.3E-39 257.0 -4.4 170 65-238 35-241 (279)
23 2qi9_C Vitamin B12 import ATP- 100.0 3.7E-34 1.3E-38 250.5 -2.1 168 66-238 15-211 (249)
24 2yz2_A Putative ABC transporte 100.0 3.8E-34 1.3E-38 253.1 -2.7 169 66-238 22-216 (266)
25 2ff7_A Alpha-hemolysin translo 100.0 3.2E-33 1.1E-37 244.5 0.3 167 66-238 24-221 (247)
26 2nq2_C Hypothetical ABC transp 100.0 1.3E-33 4.4E-38 247.8 -2.5 168 66-237 20-206 (253)
27 1sgw_A Putative ABC transporte 100.0 2.4E-34 8.3E-39 246.1 -7.6 163 65-233 23-207 (214)
28 2d2e_A SUFC protein; ABC-ATPas 100.0 9.9E-34 3.4E-38 248.3 -5.2 169 66-238 18-222 (250)
29 3nh6_A ATP-binding cassette SU 100.0 1.7E-33 5.8E-38 252.8 -3.9 167 66-238 69-266 (306)
30 1mv5_A LMRA, multidrug resista 100.0 6.2E-33 2.1E-37 242.2 -3.3 167 66-238 17-215 (243)
31 2pjz_A Hypothetical protein ST 100.0 1.6E-32 5.5E-37 241.9 -0.9 160 66-238 20-204 (263)
32 2zu0_C Probable ATP-dependent 100.0 6.6E-33 2.3E-37 245.2 -3.5 170 65-238 34-243 (267)
33 2cbz_A Multidrug resistance-as 100.0 5E-33 1.7E-37 241.9 -7.0 160 66-238 20-206 (237)
34 2ghi_A Transport protein; mult 100.0 1.5E-32 5E-37 242.1 -4.9 166 66-238 35-231 (260)
35 2pze_A Cystic fibrosis transme 100.0 1.9E-32 6.4E-37 237.1 -4.3 160 66-238 23-207 (229)
36 3gd7_A Fusion complex of cysti 100.0 2.5E-32 8.5E-37 252.6 -7.5 176 65-247 35-244 (390)
37 3b5x_A Lipid A export ATP-bind 100.0 6.1E-30 2.1E-34 249.5 3.4 168 65-238 357-556 (582)
38 3qf4_B Uncharacterized ABC tra 100.0 3E-30 1E-34 252.3 -0.8 167 66-238 370-567 (598)
39 2bbs_A Cystic fibrosis transme 100.0 1.1E-30 3.8E-35 233.1 -3.6 160 66-238 53-236 (290)
40 3qf4_A ABC transporter, ATP-bi 100.0 3.9E-30 1.3E-34 250.9 -0.2 167 66-238 358-555 (587)
41 3ozx_A RNAse L inhibitor; ATP 100.0 1.2E-29 4.1E-34 244.3 2.5 160 71-233 288-460 (538)
42 4a82_A Cystic fibrosis transme 99.9 4.5E-30 1.6E-34 250.2 -1.9 167 66-238 356-553 (578)
43 2yl4_A ATP-binding cassette SU 99.9 1.3E-29 4.4E-34 247.9 0.6 167 66-238 359-559 (595)
44 3b60_A Lipid A export ATP-bind 99.9 5.4E-30 1.8E-34 249.9 -5.3 168 65-238 357-556 (582)
45 1yqt_A RNAse L inhibitor; ATP- 99.9 1.3E-28 4.5E-33 237.4 2.3 164 66-233 37-232 (538)
46 3j16_B RLI1P; ribosome recycli 99.9 2.6E-28 9E-33 237.6 4.2 158 73-233 99-295 (608)
47 3ozx_A RNAse L inhibitor; ATP 99.9 2.6E-28 9E-33 234.9 4.1 156 74-233 22-211 (538)
48 3bk7_A ABC transporter ATP-bin 99.9 1.6E-28 5.6E-33 239.3 1.7 164 66-233 107-302 (607)
49 1yqt_A RNAse L inhibitor; ATP- 99.9 1.3E-28 4.4E-33 237.5 0.3 159 70-233 305-476 (538)
50 3bk7_A ABC transporter ATP-bin 99.9 1.9E-28 6.7E-33 238.8 1.2 159 70-233 375-546 (607)
51 3j16_B RLI1P; ribosome recycli 99.9 2.8E-28 9.7E-33 237.3 2.1 162 67-233 363-542 (608)
52 3ux8_A Excinuclease ABC, A sub 99.9 2.1E-27 7.3E-32 235.1 0.5 163 66-232 33-276 (670)
53 4f4c_A Multidrug resistance pr 99.9 1.2E-27 4.1E-32 251.6 -2.1 167 66-238 1094-1293(1321)
54 3g5u_A MCG1178, multidrug resi 99.9 1.7E-27 5.7E-32 249.9 -2.2 167 66-238 405-602 (1284)
55 3g5u_A MCG1178, multidrug resi 99.9 1.5E-27 5E-32 250.3 -3.3 167 66-238 1048-1247(1284)
56 2xau_A PRE-mRNA-splicing facto 99.9 4.2E-24 1.5E-28 214.0 16.5 212 39-250 71-283 (773)
57 2iw3_A Elongation factor 3A; a 99.9 2E-26 6.8E-31 232.6 -1.9 79 153-238 897-976 (986)
58 4f4c_A Multidrug resistance pr 99.9 1.4E-26 4.7E-31 243.6 -4.3 167 65-237 432-629 (1321)
59 3ux8_A Excinuclease ABC, A sub 99.9 6.8E-26 2.3E-30 224.4 -1.5 77 152-232 538-618 (670)
60 2iw3_A Elongation factor 3A; a 99.9 6.1E-25 2.1E-29 221.8 1.1 165 65-237 449-622 (986)
61 4gp7_A Metallophosphoesterase; 99.9 1.7E-25 5.8E-30 184.8 -3.1 135 70-225 2-165 (171)
62 3b85_A Phosphate starvation-in 99.9 2.1E-24 7.1E-29 183.7 -0.9 138 73-224 18-163 (208)
63 2npi_A Protein CLP1; CLP1-PCF1 99.9 1.3E-24 4.5E-29 205.3 -2.4 161 68-237 129-327 (460)
64 2vf7_A UVRA2, excinuclease ABC 99.9 8.1E-24 2.8E-28 211.6 -2.2 78 152-233 725-806 (842)
65 1ye8_A Protein THEP1, hypothet 99.9 7.8E-23 2.7E-27 169.9 3.1 139 79-228 2-152 (178)
66 4aby_A DNA repair protein RECN 99.8 3.3E-22 1.1E-26 187.1 5.2 71 158-233 296-369 (415)
67 3pih_A Uvrabc system protein A 99.8 2.1E-23 7.2E-28 210.2 -4.0 77 153-233 801-881 (916)
68 2r6f_A Excinuclease ABC subuni 99.8 8.1E-23 2.8E-27 205.1 -2.2 78 152-233 840-921 (972)
69 2ygr_A Uvrabc system protein A 99.8 2.7E-22 9.3E-27 201.9 -2.3 78 152-233 858-939 (993)
70 2pt7_A CAG-ALFA; ATPase, prote 99.8 3.4E-21 1.1E-25 175.1 4.7 132 66-237 160-291 (330)
71 1tq4_A IIGP1, interferon-induc 99.8 1E-22 3.4E-27 189.5 -8.6 159 65-230 37-248 (413)
72 3qf7_A RAD50; ABC-ATPase, ATPa 99.8 2.1E-20 7.4E-25 172.1 6.8 82 152-238 274-362 (365)
73 3llm_A ATP-dependent RNA helic 99.8 8.4E-19 2.9E-23 151.7 14.6 182 50-233 49-234 (235)
74 1e69_A Chromosome segregation 99.8 1.2E-19 4.2E-24 164.4 7.7 73 152-229 214-291 (322)
75 1znw_A Guanylate kinase, GMP k 99.8 4.7E-21 1.6E-25 162.8 -4.3 161 72-237 15-206 (207)
76 2ehv_A Hypothetical protein PH 99.7 8E-19 2.8E-23 152.3 4.1 156 73-233 26-206 (251)
77 3qkt_A DNA double-strand break 99.7 1.7E-17 6E-22 151.2 9.8 79 152-234 243-328 (339)
78 3b9q_A Chloroplast SRP recepto 99.7 1.6E-18 5.5E-23 155.4 2.8 157 70-238 93-284 (302)
79 1z6g_A Guanylate kinase; struc 99.7 3.8E-20 1.3E-24 158.6 -7.7 158 66-231 12-206 (218)
80 2w0m_A SSO2452; RECA, SSPF, un 99.7 4.4E-18 1.5E-22 145.9 4.9 165 66-233 11-190 (235)
81 3sop_A Neuronal-specific septi 99.7 4.7E-19 1.6E-23 156.5 -1.8 131 79-220 4-151 (270)
82 2eyu_A Twitching motility prot 99.7 4.1E-18 1.4E-22 149.8 4.1 130 66-233 16-146 (261)
83 1cr0_A DNA primase/helicase; R 99.7 1.2E-17 4.2E-22 149.2 6.6 167 64-237 22-236 (296)
84 2v9p_A Replication protein E1; 99.7 6.2E-19 2.1E-23 157.7 -2.8 131 65-238 114-255 (305)
85 1tf7_A KAIC; homohexamer, hexa 99.7 2.5E-18 8.7E-23 165.6 1.1 148 72-233 276-441 (525)
86 4a74_A DNA repair and recombin 99.7 8.2E-18 2.8E-22 144.1 3.2 144 73-233 21-198 (231)
87 1tf7_A KAIC; homohexamer, hexa 99.7 1.2E-17 4.1E-22 160.9 4.6 164 65-233 26-208 (525)
88 2og2_A Putative signal recogni 99.7 1E-17 3.5E-22 153.2 1.8 156 70-237 150-340 (359)
89 2i3b_A HCR-ntpase, human cance 99.7 2.8E-17 9.7E-22 137.5 3.0 131 77-226 1-158 (189)
90 3thx_A DNA mismatch repair pro 99.6 3.5E-17 1.2E-21 165.8 2.0 141 67-233 652-798 (934)
91 2obl_A ESCN; ATPase, hydrolase 99.6 3.7E-17 1.3E-21 149.2 0.9 152 64-237 59-243 (347)
92 3thx_B DNA mismatch repair pro 99.6 4.7E-17 1.6E-21 164.4 1.1 140 67-230 663-806 (918)
93 2o8b_B DNA mismatch repair pro 99.6 2E-16 6.7E-21 162.0 5.5 143 67-233 772-926 (1022)
94 3aez_A Pantothenate kinase; tr 99.6 3.8E-17 1.3E-21 147.1 -0.4 147 74-232 87-242 (312)
95 3jvv_A Twitching mobility prot 99.6 4.9E-16 1.7E-20 142.2 5.8 125 73-233 119-244 (356)
96 2dpy_A FLII, flagellum-specifi 99.6 6.1E-17 2.1E-21 152.1 -1.5 154 64-233 145-329 (438)
97 1f2t_B RAD50 ABC-ATPase; DNA d 99.6 1E-15 3.5E-20 122.9 4.3 79 151-233 51-136 (148)
98 1ewq_A DNA mismatch repair pro 99.6 2E-15 6.8E-20 150.3 6.9 123 77-226 576-704 (765)
99 1pzn_A RAD51, DNA repair and r 99.5 3.4E-15 1.2E-19 136.5 6.0 146 66-227 119-294 (349)
100 1rj9_A FTSY, signal recognitio 99.5 8.8E-15 3E-19 131.2 7.4 137 76-220 101-259 (304)
101 1nlf_A Regulatory protein REPA 99.5 2.1E-14 7.1E-19 127.1 5.4 138 73-223 26-185 (279)
102 3pih_A Uvrabc system protein A 99.5 1.1E-14 3.8E-19 147.0 3.6 139 90-232 381-538 (916)
103 2jeo_A Uridine-cytidine kinase 99.5 3.7E-15 1.3E-19 129.6 0.1 151 64-229 12-176 (245)
104 2qnr_A Septin-2, protein NEDD5 99.5 2E-15 6.7E-20 135.4 -1.8 137 66-219 13-167 (301)
105 2ewv_A Twitching motility prot 99.5 2.5E-14 8.6E-19 131.8 5.2 128 67-232 128-256 (372)
106 1wb9_A DNA mismatch repair pro 99.5 1.1E-14 3.7E-19 145.8 2.3 142 67-233 598-743 (800)
107 2cvh_A DNA repair and recombin 99.4 1.9E-14 6.4E-19 122.3 2.6 149 66-234 8-184 (220)
108 2gza_A Type IV secretion syste 99.4 7.3E-14 2.5E-18 128.2 3.6 135 67-233 165-300 (361)
109 1s96_A Guanylate kinase, GMP k 99.4 1E-13 3.4E-18 118.6 2.3 127 72-224 11-145 (219)
110 1nij_A Hypothetical protein YJ 99.4 1.4E-13 4.9E-18 124.2 2.8 136 78-227 5-197 (318)
111 1lw7_A Transcriptional regulat 99.4 2E-15 6.8E-20 138.9 -9.8 162 67-233 158-342 (365)
112 3szr_A Interferon-induced GTP- 99.4 3.2E-14 1.1E-18 139.1 -2.0 130 79-220 47-197 (608)
113 1n0w_A DNA repair protein RAD5 99.3 5.2E-13 1.8E-17 115.0 4.8 150 67-233 13-207 (243)
114 2kjq_A DNAA-related protein; s 99.3 9.6E-13 3.3E-17 105.7 5.0 87 76-218 35-124 (149)
115 2vf7_A UVRA2, excinuclease ABC 99.3 4.1E-13 1.4E-17 134.5 3.2 79 151-233 373-454 (842)
116 3ec2_A DNA replication protein 99.3 2.4E-13 8.3E-18 112.2 0.8 106 73-219 34-143 (180)
117 2r6f_A Excinuclease ABC subuni 99.3 1.4E-12 4.7E-17 131.4 4.8 79 151-233 498-579 (972)
118 2ygr_A Uvrabc system protein A 99.3 2E-12 6.8E-17 130.6 5.3 79 151-233 515-596 (993)
119 3asz_A Uridine kinase; cytidin 99.3 6E-15 2E-19 125.0 -11.6 140 74-219 3-161 (211)
120 3kta_B Chromosome segregation 99.3 7.2E-12 2.5E-16 102.9 7.0 78 151-233 58-140 (173)
121 4ad8_A DNA repair protein RECN 99.2 2E-12 6.7E-17 124.2 2.4 75 154-233 393-471 (517)
122 2bdt_A BH3686; alpha-beta prot 99.2 1.1E-13 3.6E-18 115.2 -6.5 149 77-238 2-173 (189)
123 2px0_A Flagellar biosynthesis 99.2 3.1E-11 1E-15 107.7 8.3 136 75-233 103-240 (296)
124 1vma_A Cell division protein F 99.2 2E-11 6.8E-16 109.4 6.8 110 74-203 101-213 (306)
125 3e70_C DPA, signal recognition 99.2 1.5E-11 5.1E-16 111.2 5.9 130 74-218 126-278 (328)
126 1htw_A HI0065; nucleotide-bind 99.2 2.7E-12 9.4E-17 104.0 1.0 51 64-115 20-70 (158)
127 2qag_C Septin-7; cell cycle, c 99.2 3.9E-13 1.3E-17 125.3 -4.9 118 80-200 34-163 (418)
128 2f1r_A Molybdopterin-guanine d 99.1 1.3E-12 4.3E-17 107.4 -3.2 101 78-178 3-124 (171)
129 2yhs_A FTSY, cell division pro 99.1 1.5E-11 5E-16 116.0 3.4 49 70-118 286-334 (503)
130 1zp6_A Hypothetical protein AT 99.1 4.5E-12 1.5E-16 105.3 -1.3 103 73-179 5-131 (191)
131 1pui_A ENGB, probable GTP-bind 99.1 1.2E-11 4.2E-16 103.9 0.1 128 72-204 21-195 (210)
132 3lda_A DNA repair protein RAD5 99.1 6.3E-11 2.1E-15 109.8 4.2 48 67-114 167-222 (400)
133 3c8u_A Fructokinase; YP_612366 99.1 3.2E-12 1.1E-16 108.1 -4.4 102 74-183 19-138 (208)
134 2dr3_A UPF0273 protein PH0284; 99.0 9.5E-11 3.2E-15 100.8 4.0 162 67-233 12-195 (247)
135 2qm8_A GTPase/ATPase; G protei 99.0 2.5E-10 8.5E-15 103.7 6.6 51 65-115 43-93 (337)
136 3auy_A DNA double-strand break 99.0 1.7E-10 6E-15 106.1 5.5 80 153-237 276-363 (371)
137 1w1w_A Structural maintenance 99.0 2E-10 6.9E-15 107.7 5.7 76 156-235 332-412 (430)
138 1ls1_A Signal recognition part 99.0 5.9E-10 2E-14 99.3 8.2 112 76-205 97-209 (295)
139 2o5v_A DNA replication and rep 99.0 9.3E-11 3.2E-15 107.2 2.9 74 154-238 261-345 (359)
140 1sxj_E Activator 1 40 kDa subu 99.0 1.6E-10 5.5E-15 105.1 3.9 136 79-233 38-189 (354)
141 2va8_A SSO2462, SKI2-type heli 99.0 1.3E-09 4.6E-14 108.3 10.6 198 42-244 10-212 (715)
142 2rcn_A Probable GTPase ENGC; Y 99.0 5.7E-11 2E-15 108.3 0.7 44 67-111 206-250 (358)
143 2bbw_A Adenylate kinase 4, AK4 99.0 1E-11 3.6E-16 107.6 -4.4 37 76-112 26-65 (246)
144 1lvg_A Guanylate kinase, GMP k 99.0 1.2E-11 4.2E-16 103.8 -4.0 28 75-102 2-29 (198)
145 1sq5_A Pantothenate kinase; P- 99.0 9.4E-11 3.2E-15 105.2 1.2 45 66-110 50-115 (308)
146 2qag_B Septin-6, protein NEDD5 98.9 1.3E-10 4.5E-15 108.0 0.4 35 67-101 30-66 (427)
147 2x8a_A Nuclear valosin-contain 98.9 2.7E-11 9.3E-16 106.9 -4.2 113 65-183 34-161 (274)
148 1udx_A The GTP-binding protein 98.9 2E-11 7E-16 113.6 -7.2 111 68-181 148-276 (416)
149 3euj_A Chromosome partition pr 98.8 8.4E-11 2.9E-15 111.1 -5.1 51 64-115 17-67 (483)
150 2p6r_A Afuhel308 helicase; pro 98.8 9.5E-09 3.2E-13 102.0 9.3 174 68-245 31-210 (702)
151 1odf_A YGR205W, hypothetical 3 98.8 1.8E-10 6.3E-15 102.4 -3.0 30 75-104 29-58 (290)
152 1ni3_A YCHF GTPase, YCHF GTP-b 98.8 1.7E-10 5.8E-15 106.5 -3.5 56 175-236 139-199 (392)
153 2oap_1 GSPE-2, type II secreti 98.7 6.1E-09 2.1E-13 99.5 4.7 50 65-114 248-297 (511)
154 2zj8_A DNA helicase, putative 98.7 1.5E-08 5.2E-13 100.9 7.7 195 44-243 5-205 (720)
155 3lnc_A Guanylate kinase, GMP k 98.7 1.7E-09 5.7E-14 92.7 0.6 36 66-101 16-52 (231)
156 1in4_A RUVB, holliday junction 98.7 2.5E-09 8.5E-14 96.9 0.8 47 64-110 31-88 (334)
157 3o8b_A HCV NS3 protease/helica 98.7 7.6E-09 2.6E-13 101.2 4.3 154 53-219 208-362 (666)
158 3kl4_A SRP54, signal recogniti 98.6 7.8E-08 2.7E-12 89.7 9.5 123 77-217 97-222 (433)
159 1iy2_A ATP-dependent metallopr 98.6 3.1E-10 1.1E-14 100.1 -6.5 113 65-183 63-193 (278)
160 3k1j_A LON protease, ATP-depen 98.6 7.9E-08 2.7E-12 93.8 9.0 51 62-112 45-96 (604)
161 2zr9_A Protein RECA, recombina 98.6 3.9E-08 1.3E-12 89.6 6.4 48 67-114 49-98 (349)
162 1ixz_A ATP-dependent metallopr 98.6 3.9E-10 1.3E-14 98.0 -7.2 113 65-183 39-169 (254)
163 2r6a_A DNAB helicase, replicat 98.6 3.7E-08 1.3E-12 92.9 5.0 51 64-114 190-241 (454)
164 1u0l_A Probable GTPase ENGC; p 98.6 2E-08 6.7E-13 89.7 2.7 44 71-114 163-209 (301)
165 3tr0_A Guanylate kinase, GMP k 98.6 1.4E-08 4.7E-13 84.9 1.4 31 72-102 2-32 (205)
166 2whx_A Serine protease/ntpase/ 98.5 3.5E-08 1.2E-12 96.5 3.9 160 47-220 157-321 (618)
167 2ius_A DNA translocase FTSK; n 98.5 4.3E-08 1.5E-12 93.2 4.4 157 70-231 160-361 (512)
168 1p9r_A General secretion pathw 98.5 3.9E-08 1.3E-12 91.6 3.8 48 65-114 157-204 (418)
169 3a00_A Guanylate kinase, GMP k 98.5 2.4E-08 8.4E-13 82.5 1.1 30 77-106 1-30 (186)
170 1qhl_A Protein (cell division 98.5 4E-09 1.4E-13 90.3 -4.2 38 78-115 28-65 (227)
171 1zu4_A FTSY; GTPase, signal re 98.5 9.9E-08 3.4E-12 85.8 4.6 52 69-120 97-148 (320)
172 2jlq_A Serine protease subunit 98.4 6.6E-07 2.3E-11 84.2 9.4 150 73-233 15-167 (451)
173 2z83_A Helicase/nucleoside tri 98.4 1E-06 3.5E-11 83.1 10.4 137 72-219 16-155 (459)
174 2yv5_A YJEQ protein; hydrolase 98.4 9.1E-08 3.1E-12 85.4 3.0 43 71-114 159-204 (302)
175 3hr8_A Protein RECA; alpha and 98.4 7.7E-07 2.6E-11 81.0 8.2 40 73-112 57-96 (356)
176 1t9h_A YLOQ, probable GTPase E 98.4 2.8E-08 9.6E-13 88.8 -1.5 39 72-110 168-206 (307)
177 2ce7_A Cell division protein F 98.4 8.3E-08 2.8E-12 90.7 1.5 104 80-222 52-167 (476)
178 3uie_A Adenylyl-sulfate kinase 98.4 1.3E-07 4.3E-12 79.1 2.4 48 66-114 14-63 (200)
179 1fnn_A CDC6P, cell division co 98.3 8.9E-07 3E-11 80.9 8.1 35 79-113 46-82 (389)
180 1kgd_A CASK, peripheral plasma 98.3 1.2E-07 4.1E-12 77.9 1.7 35 76-110 4-39 (180)
181 3tqc_A Pantothenate kinase; bi 98.3 4.4E-07 1.5E-11 81.5 5.2 52 64-115 73-132 (321)
182 2j41_A Guanylate kinase; GMP, 98.3 1.2E-07 4E-12 79.2 1.0 34 73-106 2-35 (207)
183 4eun_A Thermoresistant glucoki 98.3 2.4E-07 8.1E-12 77.4 2.7 39 73-115 25-63 (200)
184 2v6i_A RNA helicase; membrane, 98.3 3.9E-06 1.3E-10 78.5 11.3 132 76-219 1-136 (431)
185 4a1f_A DNAB helicase, replicat 98.3 1E-06 3.5E-11 79.6 6.1 130 64-216 33-163 (338)
186 1sxj_C Activator 1 40 kDa subu 98.2 1.6E-06 5.4E-11 78.4 7.1 41 64-104 31-73 (340)
187 1rz3_A Hypothetical protein rb 98.2 3.5E-07 1.2E-11 76.5 2.2 41 74-114 19-59 (201)
188 1jjv_A Dephospho-COA kinase; P 98.2 9.6E-08 3.3E-12 80.0 -1.3 122 79-233 4-131 (206)
189 2vp4_A Deoxynucleoside kinase; 98.2 4.7E-07 1.6E-11 77.4 2.7 37 74-114 17-53 (230)
190 2qby_A CDC6 homolog 1, cell di 98.1 1.7E-06 5.9E-11 78.6 5.4 30 76-105 44-73 (386)
191 4e22_A Cytidylate kinase; P-lo 98.1 2.8E-07 9.7E-12 79.9 -0.3 35 75-109 25-62 (252)
192 3kta_A Chromosome segregation 98.1 6E-07 2.1E-11 73.4 1.3 37 70-107 20-56 (182)
193 1j8m_F SRP54, signal recogniti 98.1 1.4E-05 4.8E-10 71.0 10.3 47 77-123 98-144 (297)
194 3nwj_A ATSK2; P loop, shikimat 98.1 7.8E-07 2.7E-11 77.1 2.0 38 64-101 32-72 (250)
195 2e87_A Hypothetical protein PH 98.1 6.3E-06 2.1E-10 75.1 8.0 121 77-220 167-293 (357)
196 3pey_A ATP-dependent RNA helic 98.1 2.2E-05 7.7E-10 71.3 11.6 175 41-219 6-189 (395)
197 3l9o_A ATP-dependent RNA helic 98.1 7.4E-06 2.5E-10 85.0 9.3 175 61-246 183-366 (1108)
198 3tau_A Guanylate kinase, GMP k 98.1 6.6E-07 2.2E-11 75.2 1.1 29 75-103 6-34 (208)
199 1qde_A EIF4A, translation init 98.1 6.6E-05 2.3E-09 63.1 13.5 189 42-235 16-217 (224)
200 1yks_A Genome polyprotein [con 98.1 2E-05 6.8E-10 73.8 11.0 135 74-219 5-142 (440)
201 3ney_A 55 kDa erythrocyte memb 98.1 1.3E-06 4.3E-11 73.0 2.4 28 75-102 17-44 (197)
202 1knq_A Gluconate kinase; ALFA/ 98.0 1.6E-06 5.3E-11 70.5 2.5 37 75-115 6-42 (175)
203 2ffh_A Protein (FFH); SRP54, s 98.0 1.6E-05 5.4E-10 74.0 9.5 47 76-122 97-143 (425)
204 3vaa_A Shikimate kinase, SK; s 98.0 1.2E-06 3.9E-11 73.1 1.5 36 66-101 14-49 (199)
205 3b9p_A CG5977-PA, isoform A; A 98.0 1.6E-05 5.6E-10 70.0 9.1 26 76-101 53-78 (297)
206 2dhr_A FTSH; AAA+ protein, hex 98.0 1.8E-07 6.3E-12 88.9 -4.1 107 72-184 61-185 (499)
207 2w58_A DNAI, primosome compone 98.0 4.6E-06 1.6E-10 69.3 4.9 31 78-108 55-85 (202)
208 2p67_A LAO/AO transport system 98.0 1.6E-06 5.6E-11 78.5 2.2 53 65-117 44-96 (341)
209 2wv9_A Flavivirin protease NS2 98.0 2.3E-05 8E-10 77.2 10.4 136 73-219 237-375 (673)
210 4a4z_A Antiviral helicase SKI2 98.0 1.7E-05 5.9E-10 81.5 9.8 173 64-246 41-223 (997)
211 3cr8_A Sulfate adenylyltranfer 98.0 1.5E-06 5.1E-11 83.6 1.8 41 73-113 365-407 (552)
212 1sxj_D Activator 1 41 kDa subu 98.0 2.1E-06 7.3E-11 77.4 2.7 37 66-102 45-83 (353)
213 2z4s_A Chromosomal replication 98.0 8.9E-06 3.1E-10 76.2 6.6 27 77-103 130-156 (440)
214 3m6a_A ATP-dependent protease 98.0 6.4E-07 2.2E-11 86.2 -1.3 44 67-111 99-142 (543)
215 3eiq_A Eukaryotic initiation f 98.0 2.3E-05 7.9E-10 71.9 9.1 175 40-220 40-227 (414)
216 1v5w_A DMC1, meiotic recombina 97.9 7.2E-06 2.4E-10 74.3 5.3 34 67-100 111-145 (343)
217 3ber_A Probable ATP-dependent 97.9 9.6E-05 3.3E-09 63.6 12.2 173 40-220 43-230 (249)
218 1svm_A Large T antigen; AAA+ f 97.9 2.4E-06 8.1E-11 78.4 1.9 43 65-110 157-199 (377)
219 3dm5_A SRP54, signal recogniti 97.9 3.7E-05 1.3E-09 71.7 9.8 110 77-204 100-210 (443)
220 1njg_A DNA polymerase III subu 97.9 4E-05 1.4E-09 64.3 9.3 37 66-102 31-70 (250)
221 3bh0_A DNAB-like replicative h 97.9 8E-06 2.7E-10 73.1 5.0 123 64-204 55-177 (315)
222 2www_A Methylmalonic aciduria 97.9 3.3E-06 1.1E-10 76.8 2.3 41 77-117 74-114 (349)
223 3bos_A Putative DNA replicatio 97.9 1.5E-05 5.1E-10 67.4 6.2 28 76-103 51-78 (242)
224 1vec_A ATP-dependent RNA helic 97.9 0.00015 5E-09 60.0 12.2 148 66-219 29-189 (206)
225 3dkp_A Probable ATP-dependent 97.9 0.00012 4E-09 62.6 11.8 166 65-233 54-239 (245)
226 3fht_A ATP-dependent RNA helic 97.9 9.4E-05 3.2E-09 67.7 11.9 177 40-220 25-213 (412)
227 2z43_A DNA repair and recombin 97.9 1E-05 3.5E-10 72.7 5.2 35 67-101 96-131 (324)
228 1oix_A RAS-related protein RAB 97.9 2.4E-06 8.3E-11 70.5 0.9 25 79-103 31-55 (191)
229 1kag_A SKI, shikimate kinase I 97.9 3.2E-06 1.1E-10 68.4 1.3 27 76-102 3-29 (173)
230 3iuy_A Probable ATP-dependent 97.9 0.00019 6.7E-09 60.4 12.6 147 66-219 46-210 (228)
231 3cf0_A Transitional endoplasmi 97.9 7.4E-06 2.5E-10 72.8 3.8 28 74-101 46-73 (301)
232 3fmp_B ATP-dependent RNA helic 97.8 0.00013 4.4E-09 68.7 12.0 176 41-220 93-280 (479)
233 2b8t_A Thymidine kinase; deoxy 97.8 5.1E-05 1.8E-09 64.4 7.6 27 75-101 10-36 (223)
234 1ypw_A Transitional endoplasmi 97.7 1.9E-05 6.4E-10 79.5 4.8 30 73-102 234-263 (806)
235 3h4m_A Proteasome-activating n 97.7 1.9E-05 6.5E-10 69.1 4.3 27 75-101 49-75 (285)
236 1w1w_A Structural maintenance 97.7 7E-06 2.4E-10 76.6 1.4 32 74-105 23-54 (430)
237 2chg_A Replication factor C sm 97.7 0.00018 6E-09 59.6 10.0 36 66-101 25-62 (226)
238 2v1u_A Cell division control p 97.7 6.5E-05 2.2E-09 68.2 7.7 28 75-102 42-69 (387)
239 1t6n_A Probable ATP-dependent 97.7 0.00028 9.7E-09 59.0 11.2 172 40-218 14-201 (220)
240 1l8q_A Chromosomal replication 97.7 1.7E-05 6E-10 70.9 3.6 28 77-104 37-64 (324)
241 2oxc_A Probable ATP-dependent 97.7 0.00014 5E-09 61.5 9.1 151 65-220 49-211 (230)
242 2pez_A Bifunctional 3'-phospho 97.7 1E-05 3.5E-10 65.9 1.6 31 75-106 3-33 (179)
243 2pl3_A Probable ATP-dependent 97.7 0.00027 9.2E-09 59.9 10.6 172 42-219 27-214 (236)
244 1cke_A CK, MSSA, protein (cyti 97.7 4.8E-06 1.6E-10 70.4 -0.5 25 77-101 5-29 (227)
245 2f9l_A RAB11B, member RAS onco 97.7 8.2E-06 2.8E-10 67.5 0.8 23 79-101 7-29 (199)
246 3n70_A Transport activator; si 97.7 0.00016 5.5E-09 56.8 8.3 35 67-101 14-48 (145)
247 2o5v_A DNA replication and rep 97.7 1.5E-05 5.1E-10 72.6 2.4 30 69-99 19-48 (359)
248 2dy1_A Elongation factor G; tr 97.6 1.8E-05 6E-10 78.0 2.7 37 72-108 4-42 (665)
249 1xti_A Probable ATP-dependent 97.6 0.00021 7.1E-09 64.9 9.5 150 65-219 33-196 (391)
250 1hv8_A Putative ATP-dependent 97.6 0.00053 1.8E-08 61.4 12.0 157 70-233 37-207 (367)
251 1m7g_A Adenylylsulfate kinase; 97.6 1.1E-05 3.8E-10 67.6 0.7 40 72-111 20-61 (211)
252 2qt1_A Nicotinamide riboside k 97.6 1.2E-05 4.1E-10 67.1 0.8 31 71-101 15-45 (207)
253 2orw_A Thymidine kinase; TMTK, 97.6 7E-05 2.4E-09 61.6 5.3 24 76-99 2-25 (184)
254 3fho_A ATP-dependent RNA helic 97.6 0.00017 5.8E-09 68.6 8.8 144 72-218 151-302 (508)
255 3t34_A Dynamin-related protein 97.6 5.4E-06 1.8E-10 75.6 -1.6 29 79-107 36-66 (360)
256 2qgz_A Helicase loader, putati 97.6 4.6E-05 1.6E-09 67.9 4.3 26 77-102 152-177 (308)
257 2gxq_A Heat resistant RNA depe 97.6 0.00097 3.3E-08 54.9 12.2 145 65-219 26-187 (207)
258 3co5_A Putative two-component 97.6 0.00022 7.7E-09 55.8 7.7 34 67-100 17-50 (143)
259 3b6e_A Interferon-induced heli 97.6 0.00034 1.2E-08 58.0 9.3 32 67-98 38-69 (216)
260 1lv7_A FTSH; alpha/beta domain 97.6 0.00015 5.1E-09 62.4 7.2 24 78-101 46-69 (257)
261 1q0u_A Bstdead; DEAD protein, 97.5 0.00054 1.8E-08 57.4 10.4 171 44-219 8-193 (219)
262 2qz4_A Paraplegin; AAA+, SPG7, 97.5 0.0001 3.6E-09 63.3 5.6 26 76-101 38-63 (262)
263 1u94_A RECA protein, recombina 97.5 0.00011 3.6E-09 66.9 5.8 39 74-112 60-98 (356)
264 4eaq_A DTMP kinase, thymidylat 97.5 5.2E-05 1.8E-09 64.6 3.2 42 68-110 14-58 (229)
265 2xgj_A ATP-dependent RNA helic 97.4 0.00055 1.9E-08 70.4 11.0 172 64-246 88-268 (1010)
266 2yvu_A Probable adenylyl-sulfa 97.4 4.1E-05 1.4E-09 62.7 2.0 37 75-111 11-47 (186)
267 1d2n_A N-ethylmaleimide-sensit 97.4 9E-05 3.1E-09 64.5 4.2 24 77-100 64-87 (272)
268 1jr3_A DNA polymerase III subu 97.4 0.0003 1E-08 63.6 7.7 38 66-103 24-64 (373)
269 2q6t_A DNAB replication FORK h 97.4 0.00039 1.3E-08 65.0 8.7 50 64-113 187-237 (444)
270 1f2t_A RAD50 ABC-ATPase; DNA d 97.4 3.8E-05 1.3E-09 61.0 1.3 24 78-101 24-47 (149)
271 3ly5_A ATP-dependent RNA helic 97.4 0.00033 1.1E-08 60.7 7.2 147 65-219 79-244 (262)
272 1xx6_A Thymidine kinase; NESG, 97.4 0.00024 8.2E-09 58.8 5.8 26 75-100 6-31 (191)
273 2ykg_A Probable ATP-dependent 97.4 0.0014 4.9E-08 64.4 12.4 148 67-218 18-184 (696)
274 2v3c_C SRP54, signal recogniti 97.4 0.00025 8.7E-09 66.1 6.5 43 78-120 100-142 (432)
275 2qor_A Guanylate kinase; phosp 97.3 4.6E-05 1.6E-09 63.5 1.2 29 73-101 8-36 (204)
276 2if2_A Dephospho-COA kinase; a 97.3 5.9E-05 2E-09 62.6 1.4 21 79-99 3-23 (204)
277 2fz4_A DNA repair protein RAD2 97.3 0.0036 1.2E-07 53.3 12.7 127 71-218 102-229 (237)
278 1xp8_A RECA protein, recombina 97.3 0.0012 4E-08 60.2 10.0 42 73-114 70-111 (366)
279 3d8b_A Fidgetin-like protein 1 97.3 0.00042 1.4E-08 62.9 6.8 26 76-101 116-141 (357)
280 3pvs_A Replication-associated 97.3 0.00025 8.5E-09 66.5 5.3 34 68-101 39-74 (447)
281 1s2m_A Putative ATP-dependent 97.2 0.0026 8.8E-08 57.9 11.8 171 42-220 23-207 (400)
282 2ga8_A Hypothetical 39.9 kDa p 97.2 9.3E-05 3.2E-09 67.0 2.0 37 66-102 11-49 (359)
283 2vhj_A Ntpase P4, P4; non- hyd 97.2 8.5E-05 2.9E-09 66.4 1.6 27 73-99 119-145 (331)
284 3rc3_A ATP-dependent RNA helic 97.2 0.00023 7.9E-09 70.1 4.7 46 76-127 154-199 (677)
285 2j9r_A Thymidine kinase; TK1, 97.2 0.0009 3.1E-08 56.2 7.7 25 75-99 26-50 (214)
286 2gj8_A MNME, tRNA modification 97.2 8.5E-05 2.9E-09 59.9 1.3 26 76-101 3-28 (172)
287 3t61_A Gluconokinase; PSI-biol 97.2 0.00011 3.8E-09 60.8 1.8 33 77-113 18-50 (202)
288 1np6_A Molybdopterin-guanine d 97.2 0.00017 5.9E-09 58.8 2.7 28 77-104 6-33 (174)
289 3fe2_A Probable ATP-dependent 97.2 0.0057 1.9E-07 51.9 12.4 184 42-233 31-236 (242)
290 2zts_A Putative uncharacterize 97.1 0.00088 3E-08 56.8 7.1 26 74-99 27-52 (251)
291 2db3_A ATP-dependent RNA helic 97.1 0.0033 1.1E-07 58.4 11.3 146 66-219 82-248 (434)
292 2qby_B CDC6 homolog 3, cell di 97.1 0.0011 3.9E-08 60.0 7.9 25 77-101 45-69 (384)
293 2wji_A Ferrous iron transport 97.1 0.00013 4.5E-09 58.2 1.4 23 79-101 5-27 (165)
294 3vfd_A Spastin; ATPase, microt 97.1 0.0014 4.8E-08 60.0 8.5 24 77-100 148-171 (389)
295 3qks_A DNA double-strand break 97.1 0.00013 4.5E-09 60.9 1.3 24 78-101 24-47 (203)
296 1iqp_A RFCS; clamp loader, ext 97.1 0.00072 2.5E-08 59.8 6.3 35 67-101 34-70 (327)
297 3u61_B DNA polymerase accessor 97.1 0.0013 4.6E-08 58.3 8.0 36 66-101 34-72 (324)
298 2i1q_A DNA repair and recombin 97.1 0.00041 1.4E-08 61.9 4.6 34 67-100 87-121 (322)
299 2zej_A Dardarin, leucine-rich 97.1 0.00013 4.5E-09 59.3 1.2 23 79-101 4-26 (184)
300 3cm0_A Adenylate kinase; ATP-b 97.1 0.00013 4.3E-09 59.4 1.0 26 75-100 2-27 (186)
301 2i4i_A ATP-dependent RNA helic 97.1 0.0024 8.2E-08 58.4 9.7 58 42-99 17-76 (417)
302 1y63_A LMAJ004144AAA protein; 97.0 0.00011 3.7E-09 60.2 0.5 31 70-100 3-33 (184)
303 1mky_A Probable GTP-binding pr 97.0 0.00037 1.3E-08 65.1 3.9 24 79-102 182-205 (439)
304 3i5x_A ATP-dependent RNA helic 97.0 0.0041 1.4E-07 59.5 11.4 65 155-219 204-276 (563)
305 1xwi_A SKD1 protein; VPS4B, AA 97.0 0.001 3.5E-08 59.4 6.6 26 76-101 44-69 (322)
306 4b4t_J 26S protease regulatory 97.0 0.00089 3E-08 61.6 6.2 26 76-101 181-206 (405)
307 2qtf_A Protein HFLX, GTP-bindi 97.0 0.00016 5.5E-09 65.9 1.2 24 79-102 181-204 (364)
308 1wp9_A ATP-dependent RNA helic 97.0 0.0017 6E-08 59.9 8.2 156 66-229 13-180 (494)
309 4fcw_A Chaperone protein CLPB; 97.0 0.00036 1.2E-08 61.6 3.4 49 64-112 23-83 (311)
310 3bor_A Human initiation factor 97.0 0.0057 1.9E-07 51.8 10.6 171 42-219 32-216 (237)
311 4b4t_L 26S protease subunit RP 96.9 0.001 3.4E-08 62.0 6.0 27 75-101 213-239 (437)
312 3syl_A Protein CBBX; photosynt 96.9 0.0018 6.1E-08 57.0 7.4 26 77-102 67-92 (309)
313 2wjg_A FEOB, ferrous iron tran 96.9 0.00024 8.1E-09 57.6 1.5 22 79-100 9-30 (188)
314 4b4t_K 26S protease regulatory 96.9 0.0012 4E-08 61.4 6.3 25 77-101 206-230 (428)
315 3tbk_A RIG-I helicase domain; 96.9 0.0057 2E-07 57.9 11.3 62 155-217 105-174 (555)
316 3kb2_A SPBC2 prophage-derived 96.9 0.00026 8.9E-09 56.6 1.4 23 79-101 3-25 (173)
317 3pfi_A Holliday junction ATP-d 96.9 0.0043 1.5E-07 55.3 9.7 24 78-101 56-79 (338)
318 4b4t_I 26S protease regulatory 96.9 0.00093 3.2E-08 61.9 5.3 26 76-101 215-240 (437)
319 3fmo_B ATP-dependent RNA helic 96.9 0.014 4.6E-07 51.5 12.8 148 67-219 119-279 (300)
320 3sqw_A ATP-dependent RNA helic 96.9 0.0072 2.5E-07 58.2 11.8 65 155-219 153-225 (579)
321 3eie_A Vacuolar protein sortin 96.9 0.0012 4E-08 58.9 5.9 25 77-101 51-75 (322)
322 1ega_A Protein (GTP-binding pr 96.9 0.00022 7.4E-09 63.3 1.0 26 76-101 7-32 (301)
323 1q3t_A Cytidylate kinase; nucl 96.9 0.00025 8.7E-09 60.3 1.3 29 73-101 12-40 (236)
324 2ohf_A Protein OLA1, GTP-bindi 96.9 0.00017 5.9E-09 66.3 0.2 28 73-100 18-45 (396)
325 3oiy_A Reverse gyrase helicase 96.9 0.002 7E-08 59.1 7.5 33 60-92 19-51 (414)
326 2p5t_B PEZT; postsegregational 96.9 0.00034 1.2E-08 60.2 2.1 39 74-114 29-67 (253)
327 4a2p_A RIG-I, retinoic acid in 96.9 0.0056 1.9E-07 58.1 10.8 62 155-217 108-176 (556)
328 3bgw_A DNAB-like replicative h 96.9 0.0012 3.9E-08 61.9 5.7 49 64-112 184-232 (444)
329 2zan_A Vacuolar protein sortin 96.8 0.0028 9.5E-08 59.2 8.3 26 76-101 166-191 (444)
330 3upu_A ATP-dependent DNA helic 96.8 0.0037 1.2E-07 58.6 9.1 38 66-103 33-71 (459)
331 3lxx_A GTPase IMAP family memb 96.8 0.00031 1.1E-08 59.7 1.6 28 79-106 31-58 (239)
332 3ice_A Transcription terminati 96.8 0.0002 6.7E-09 65.5 0.3 36 67-102 164-199 (422)
333 4b4t_M 26S protease regulatory 96.8 0.00075 2.6E-08 62.8 4.2 26 76-101 214-239 (434)
334 1rif_A DAR protein, DNA helica 96.8 0.0013 4.4E-08 57.4 5.5 41 171-217 221-262 (282)
335 1kht_A Adenylate kinase; phosp 96.8 0.00034 1.2E-08 56.9 1.7 25 77-101 3-27 (192)
336 1m2o_B GTP-binding protein SAR 96.8 0.00034 1.2E-08 57.2 1.5 34 66-100 13-46 (190)
337 1w5s_A Origin recognition comp 96.8 0.0013 4.4E-08 60.2 5.6 27 76-102 49-77 (412)
338 1w36_D RECD, exodeoxyribonucle 96.8 0.0048 1.6E-07 60.0 9.9 28 74-101 161-188 (608)
339 3io5_A Recombination and repai 96.8 0.0019 6.4E-08 57.5 6.3 26 74-100 26-51 (333)
340 1qhx_A CPT, protein (chloramph 96.8 0.00038 1.3E-08 56.1 1.7 25 77-101 3-27 (178)
341 4ag6_A VIRB4 ATPase, type IV s 96.8 0.00048 1.6E-08 63.2 2.5 50 174-223 261-311 (392)
342 2bwj_A Adenylate kinase 5; pho 96.8 0.00044 1.5E-08 56.7 2.0 32 70-101 5-36 (199)
343 1g5t_A COB(I)alamin adenosyltr 96.8 0.0017 5.7E-08 53.8 5.4 65 166-233 109-178 (196)
344 1fuu_A Yeast initiation factor 96.8 0.0015 5.1E-08 59.2 5.7 170 42-219 23-205 (394)
345 1ex7_A Guanylate kinase; subst 96.8 0.00034 1.2E-08 57.6 1.2 22 79-100 3-24 (186)
346 2j0s_A ATP-dependent RNA helic 96.8 0.014 4.7E-07 53.2 12.2 148 66-220 63-223 (410)
347 1sxj_B Activator 1 37 kDa subu 96.8 0.0021 7.2E-08 56.6 6.4 36 66-101 29-66 (323)
348 3lw7_A Adenylate kinase relate 96.8 0.00038 1.3E-08 55.5 1.4 19 79-97 3-21 (179)
349 1sxj_A Activator 1 95 kDa subu 96.8 0.0056 1.9E-07 58.2 9.8 25 77-101 77-101 (516)
350 3cmu_A Protein RECA, recombina 96.7 0.00093 3.2E-08 72.5 4.7 131 74-226 1424-1571(2050)
351 3cmu_A Protein RECA, recombina 96.7 0.0012 4.1E-08 71.6 5.5 35 66-100 1068-1104(2050)
352 3e1s_A Exodeoxyribonuclease V, 96.7 0.003 1E-07 61.0 7.7 41 70-110 197-237 (574)
353 1gtv_A TMK, thymidylate kinase 96.7 0.00016 5.6E-09 60.1 -1.0 25 79-103 2-26 (214)
354 1xjc_A MOBB protein homolog; s 96.7 0.00068 2.3E-08 54.9 2.7 26 78-103 5-30 (169)
355 4b4t_H 26S protease regulatory 96.7 0.0022 7.6E-08 59.9 6.2 28 74-101 240-267 (467)
356 1f6b_A SAR1; gtpases, N-termin 96.7 0.00023 8E-09 58.7 -0.3 34 65-99 14-47 (198)
357 4f92_B U5 small nuclear ribonu 96.7 0.0019 6.5E-08 69.9 6.5 156 70-227 935-1104(1724)
358 2jaq_A Deoxyguanosine kinase; 96.7 0.00046 1.6E-08 56.8 1.4 23 79-101 2-24 (205)
359 2r8r_A Sensor protein; KDPD, P 96.7 0.00062 2.1E-08 57.7 2.1 39 76-115 4-44 (228)
360 2rhm_A Putative kinase; P-loop 96.6 0.00044 1.5E-08 56.4 1.0 26 76-101 4-29 (193)
361 1wrb_A DJVLGB; RNA helicase, D 96.6 0.011 3.9E-07 50.3 10.0 28 66-93 49-76 (253)
362 3e2i_A Thymidine kinase; Zn-bi 96.6 0.0019 6.5E-08 54.2 4.8 52 174-233 100-162 (219)
363 4f92_B U5 small nuclear ribonu 96.6 0.011 3.6E-07 64.1 11.6 57 171-227 203-265 (1724)
364 2ze6_A Isopentenyl transferase 96.6 0.00056 1.9E-08 59.0 1.5 23 79-101 3-25 (253)
365 3r20_A Cytidylate kinase; stru 96.6 0.00037 1.3E-08 59.4 0.3 26 76-101 8-33 (233)
366 1ly1_A Polynucleotide kinase; 96.6 0.00059 2E-08 54.9 1.4 22 78-99 3-24 (181)
367 1ojl_A Transcriptional regulat 96.6 0.014 4.8E-07 51.6 10.6 45 70-114 18-63 (304)
368 3trf_A Shikimate kinase, SK; a 96.6 0.00065 2.2E-08 55.1 1.7 26 76-101 4-29 (185)
369 2c95_A Adenylate kinase 1; tra 96.6 0.00069 2.4E-08 55.4 1.8 28 74-101 6-33 (196)
370 2v54_A DTMP kinase, thymidylat 96.6 0.00065 2.2E-08 55.9 1.6 26 76-101 3-28 (204)
371 3iij_A Coilin-interacting nucl 96.6 0.00057 2E-08 55.3 1.2 26 75-100 9-34 (180)
372 1vht_A Dephospho-COA kinase; s 96.6 0.00062 2.1E-08 56.9 1.5 23 77-99 4-26 (218)
373 3k53_A Ferrous iron transport 96.5 0.00062 2.1E-08 59.2 1.4 23 79-101 5-27 (271)
374 4ad8_A DNA repair protein RECN 96.5 0.00023 7.7E-09 68.0 -1.7 33 67-100 51-83 (517)
375 2qp9_X Vacuolar protein sortin 96.5 0.0012 4.1E-08 59.9 3.1 25 77-101 84-108 (355)
376 1gvn_B Zeta; postsegregational 96.5 0.00074 2.5E-08 59.4 1.6 35 76-112 32-66 (287)
377 2oca_A DAR protein, ATP-depend 96.5 0.0034 1.2E-07 59.3 6.4 42 171-218 221-263 (510)
378 4gl2_A Interferon-induced heli 96.5 0.0011 3.8E-08 65.2 3.0 30 66-95 11-40 (699)
379 2orv_A Thymidine kinase; TP4A 96.5 0.0018 6.1E-08 55.0 3.8 52 174-233 89-150 (234)
380 2iut_A DNA translocase FTSK; n 96.5 0.0018 6.3E-08 62.0 4.4 44 177-220 345-389 (574)
381 4a2q_A RIG-I, retinoic acid in 96.5 0.013 4.4E-07 58.7 10.8 148 67-217 253-417 (797)
382 1via_A Shikimate kinase; struc 96.5 0.00061 2.1E-08 54.9 0.9 23 79-101 6-28 (175)
383 3cmw_A Protein RECA, recombina 96.5 0.003 1E-07 67.7 6.3 38 74-111 729-766 (1706)
384 1uf9_A TT1252 protein; P-loop, 96.5 0.001 3.5E-08 54.7 2.1 31 77-112 8-38 (203)
385 2vli_A Antibiotic resistance p 96.5 0.00094 3.2E-08 53.9 1.9 25 76-100 4-28 (183)
386 2plr_A DTMP kinase, probable t 96.4 0.00076 2.6E-08 55.7 1.3 27 76-102 3-29 (213)
387 2wwf_A Thymidilate kinase, put 96.4 0.00089 3E-08 55.5 1.6 27 75-101 8-34 (212)
388 3hu3_A Transitional endoplasmi 96.4 0.0026 9E-08 60.2 4.9 27 75-101 236-262 (489)
389 4a2w_A RIG-I, retinoic acid in 96.4 0.015 5.2E-07 59.4 10.9 150 66-218 252-418 (936)
390 1nks_A Adenylate kinase; therm 96.4 0.00086 2.9E-08 54.5 1.4 24 79-102 3-26 (194)
391 2z0h_A DTMP kinase, thymidylat 96.4 0.00091 3.1E-08 54.7 1.5 23 79-101 2-24 (197)
392 2chq_A Replication factor C sm 96.4 0.0012 4.1E-08 58.1 2.3 35 67-101 26-62 (319)
393 1tev_A UMP-CMP kinase; ploop, 96.4 0.00089 3E-08 54.5 1.3 24 77-100 3-26 (196)
394 4ddu_A Reverse gyrase; topoiso 96.4 0.013 4.4E-07 60.9 10.2 30 64-93 80-109 (1104)
395 1oyw_A RECQ helicase, ATP-depe 96.4 0.0043 1.5E-07 59.2 6.3 52 174-225 138-192 (523)
396 1nn5_A Similar to deoxythymidy 96.4 0.00092 3.1E-08 55.5 1.3 27 75-101 7-33 (215)
397 2ged_A SR-beta, signal recogni 96.4 0.00089 3.1E-08 54.4 1.3 23 79-101 50-72 (193)
398 1gku_B Reverse gyrase, TOP-RG; 96.4 0.0043 1.5E-07 64.2 6.5 34 65-98 59-93 (1054)
399 3auy_A DNA double-strand break 96.4 0.00092 3.1E-08 61.0 1.4 22 78-99 26-47 (371)
400 2v1x_A ATP-dependent DNA helic 96.3 0.0084 2.9E-07 58.1 8.1 53 45-97 26-81 (591)
401 2qag_A Septin-2, protein NEDD5 96.3 0.00089 3.1E-08 60.9 1.0 24 80-103 40-63 (361)
402 1z2a_A RAS-related protein RAB 96.3 0.001 3.6E-08 52.3 1.3 22 79-100 7-28 (168)
403 2ce2_X GTPase HRAS; signaling 96.3 0.001 3.5E-08 52.0 1.2 22 79-100 5-26 (166)
404 1zd8_A GTP:AMP phosphotransfer 96.3 0.0012 4.1E-08 55.7 1.6 26 75-100 5-30 (227)
405 2dyk_A GTP-binding protein; GT 96.3 0.0011 3.7E-08 52.0 1.3 23 79-101 3-25 (161)
406 3q72_A GTP-binding protein RAD 96.3 0.001 3.4E-08 52.5 1.1 22 79-100 4-25 (166)
407 1a5t_A Delta prime, HOLB; zinc 96.3 0.0072 2.5E-07 54.1 6.8 36 67-102 11-49 (334)
408 1qvr_A CLPB protein; coiled co 96.3 0.0042 1.5E-07 62.8 5.9 36 78-113 589-625 (854)
409 2xxa_A Signal recognition part 96.3 0.016 5.4E-07 53.9 9.2 46 77-122 100-146 (433)
410 3te6_A Regulatory protein SIR3 96.3 0.015 5.3E-07 51.7 8.7 41 75-115 43-91 (318)
411 3b1v_A Ferrous iron uptake tra 96.2 0.0012 4E-08 57.7 1.4 23 79-101 5-27 (272)
412 2nzj_A GTP-binding protein REM 96.2 0.0011 3.9E-08 52.6 1.2 22 79-100 6-27 (175)
413 1aky_A Adenylate kinase; ATP:A 96.2 0.0014 4.6E-08 55.0 1.6 26 76-101 3-28 (220)
414 2erx_A GTP-binding protein DI- 96.2 0.0012 4.1E-08 52.1 1.3 22 79-100 5-26 (172)
415 1fzq_A ADP-ribosylation factor 96.2 0.0011 3.8E-08 53.6 1.1 22 79-100 18-39 (181)
416 3ake_A Cytidylate kinase; CMP 96.2 0.0012 4.2E-08 54.4 1.3 23 79-101 4-26 (208)
417 2fwr_A DNA repair protein RAD2 96.2 0.015 5.2E-07 54.2 9.0 132 66-218 97-229 (472)
418 1z0j_A RAB-22, RAS-related pro 96.2 0.0012 4.2E-08 52.0 1.3 23 79-101 8-30 (170)
419 1u8z_A RAS-related protein RAL 96.2 0.0012 4.2E-08 51.7 1.3 22 79-100 6-27 (168)
420 1jbk_A CLPB protein; beta barr 96.2 0.0026 9E-08 51.0 3.3 34 68-101 32-67 (195)
421 1kao_A RAP2A; GTP-binding prot 96.2 0.0012 4.2E-08 51.7 1.3 22 79-100 5-26 (167)
422 1svi_A GTP-binding protein YSX 96.2 0.0012 4.2E-08 53.6 1.2 23 78-100 24-46 (195)
423 3pqc_A Probable GTP-binding pr 96.2 0.0012 4.2E-08 53.4 1.2 23 79-101 25-47 (195)
424 1g16_A RAS-related protein SEC 96.2 0.0013 4.3E-08 52.0 1.2 21 80-100 6-26 (170)
425 1moz_A ARL1, ADP-ribosylation 96.2 0.0011 3.7E-08 53.3 0.8 22 78-99 19-40 (183)
426 1z08_A RAS-related protein RAB 96.2 0.0013 4.4E-08 52.0 1.2 22 79-100 8-29 (170)
427 1ky3_A GTP-binding protein YPT 96.2 0.0013 4.4E-08 52.5 1.3 23 79-101 10-32 (182)
428 1ek0_A Protein (GTP-binding pr 96.2 0.0013 4.5E-08 51.8 1.3 23 79-101 5-27 (170)
429 3q85_A GTP-binding protein REM 96.2 0.0013 4.5E-08 52.0 1.2 21 80-100 5-25 (169)
430 1zuh_A Shikimate kinase; alpha 96.2 0.0015 5.3E-08 52.1 1.6 25 76-100 6-30 (168)
431 3tw8_B RAS-related protein RAB 96.2 0.0013 4.4E-08 52.5 1.1 22 79-100 11-32 (181)
432 1c1y_A RAS-related protein RAP 96.2 0.0014 4.8E-08 51.5 1.3 22 79-100 5-26 (167)
433 1wms_A RAB-9, RAB9, RAS-relate 96.1 0.0014 4.8E-08 52.2 1.3 22 79-100 9-30 (177)
434 2z0m_A 337AA long hypothetical 96.1 0.046 1.6E-06 48.0 11.3 157 66-232 20-188 (337)
435 3pxi_A Negative regulator of g 96.1 0.0091 3.1E-07 59.5 7.3 23 79-101 523-545 (758)
436 1a7j_A Phosphoribulokinase; tr 96.1 0.002 6.7E-08 56.8 2.2 26 76-101 4-29 (290)
437 3fb4_A Adenylate kinase; psych 96.1 0.0015 5.3E-08 54.3 1.5 23 79-101 2-24 (216)
438 2pbr_A DTMP kinase, thymidylat 96.1 0.0015 5.3E-08 53.0 1.4 23 79-101 2-24 (195)
439 2fn4_A P23, RAS-related protei 96.1 0.0014 4.9E-08 52.2 1.2 22 79-100 11-32 (181)
440 1zak_A Adenylate kinase; ATP:A 96.1 0.0014 4.9E-08 54.9 1.2 26 76-101 4-29 (222)
441 1jal_A YCHF protein; nucleotid 96.1 0.002 6.8E-08 58.6 2.2 22 78-99 3-24 (363)
442 2cxx_A Probable GTP-binding pr 96.1 0.0014 4.9E-08 52.8 1.1 21 80-100 4-24 (190)
443 2lkc_A Translation initiation 96.1 0.0015 5.2E-08 52.1 1.3 25 76-100 7-31 (178)
444 1qf9_A UMP/CMP kinase, protein 96.1 0.0016 5.4E-08 52.9 1.4 23 78-100 7-29 (194)
445 3lxw_A GTPase IMAP family memb 96.1 0.0015 5.1E-08 56.0 1.3 23 79-101 23-45 (247)
446 1r2q_A RAS-related protein RAB 96.1 0.0016 5.5E-08 51.2 1.3 22 79-100 8-29 (170)
447 1ukz_A Uridylate kinase; trans 96.1 0.0016 5.6E-08 53.6 1.3 24 77-100 15-38 (203)
448 2oil_A CATX-8, RAS-related pro 96.0 0.0017 5.7E-08 52.8 1.3 22 79-100 27-48 (193)
449 1sky_E F1-ATPase, F1-ATP synth 96.0 0.0013 4.4E-08 61.6 0.6 43 69-111 143-185 (473)
450 2cdn_A Adenylate kinase; phosp 96.0 0.002 6.8E-08 53.1 1.7 26 76-101 19-44 (201)
451 3dl0_A Adenylate kinase; phosp 96.0 0.0018 6.3E-08 53.9 1.5 22 79-100 2-23 (216)
452 3cbq_A GTP-binding protein REM 96.0 0.0016 5.5E-08 53.4 1.1 22 79-100 25-46 (195)
453 1upt_A ARL1, ADP-ribosylation 96.0 0.0018 6E-08 51.2 1.3 22 79-100 9-30 (171)
454 3umf_A Adenylate kinase; rossm 96.0 0.0016 5.6E-08 54.8 1.1 30 72-101 24-53 (217)
455 2y8e_A RAB-protein 6, GH09086P 96.0 0.0018 6E-08 51.6 1.2 22 79-100 16-37 (179)
456 3tlx_A Adenylate kinase 2; str 96.0 0.0026 9.1E-08 54.3 2.4 26 75-100 27-52 (243)
457 1e6c_A Shikimate kinase; phosp 96.0 0.0017 5.7E-08 51.9 1.0 23 78-100 3-25 (173)
458 4dsu_A GTPase KRAS, isoform 2B 96.0 0.0018 6.2E-08 52.1 1.3 22 79-100 6-27 (189)
459 3bc1_A RAS-related protein RAB 96.0 0.0018 6.3E-08 52.2 1.3 22 79-100 13-34 (195)
460 3clv_A RAB5 protein, putative; 96.0 0.0018 6.3E-08 52.5 1.3 22 79-100 9-30 (208)
461 1r8s_A ADP-ribosylation factor 96.0 0.0019 6.4E-08 50.7 1.3 21 80-100 3-23 (164)
462 3cmw_A Protein RECA, recombina 96.0 0.01 3.6E-07 63.6 7.2 39 74-112 380-418 (1706)
463 2pt5_A Shikimate kinase, SK; a 96.0 0.002 6.9E-08 51.2 1.4 23 79-101 2-24 (168)
464 3iby_A Ferrous iron transport 96.0 0.002 6.8E-08 55.6 1.5 23 79-101 3-25 (256)
465 1z0f_A RAB14, member RAS oncog 96.0 0.0019 6.5E-08 51.4 1.3 23 79-101 17-39 (179)
466 2hxs_A RAB-26, RAS-related pro 96.0 0.002 6.8E-08 51.3 1.3 22 79-100 8-29 (178)
467 3con_A GTPase NRAS; structural 96.0 0.0019 6.6E-08 52.2 1.3 22 79-100 23-44 (190)
468 3cf2_A TER ATPase, transitiona 96.0 0.0059 2E-07 61.1 4.9 25 77-101 238-262 (806)
469 2a9k_A RAS-related protein RAL 95.9 0.002 6.9E-08 51.6 1.3 22 79-100 20-41 (187)
470 2xb4_A Adenylate kinase; ATP-b 95.9 0.0021 7.3E-08 54.0 1.4 23 79-101 2-24 (223)
471 2g6b_A RAS-related protein RAB 95.9 0.0021 7.1E-08 51.3 1.3 23 79-101 12-34 (180)
472 3ihw_A Centg3; RAS, centaurin, 95.9 0.002 7E-08 52.2 1.2 22 79-100 22-43 (184)
473 2wsm_A Hydrogenase expression/ 95.9 0.0038 1.3E-07 51.9 2.9 27 76-102 29-55 (221)
474 2bme_A RAB4A, RAS-related prot 95.9 0.0021 7.1E-08 51.7 1.2 23 79-101 12-34 (186)
475 2qen_A Walker-type ATPase; unk 95.9 0.0045 1.5E-07 55.0 3.5 44 66-113 20-63 (350)
476 3v9p_A DTMP kinase, thymidylat 95.9 0.0024 8.4E-08 54.1 1.7 28 75-102 23-50 (227)
477 2iyv_A Shikimate kinase, SK; t 95.9 0.002 7E-08 52.1 1.1 23 78-100 3-25 (184)
478 2efe_B Small GTP-binding prote 95.9 0.0022 7.4E-08 51.3 1.2 22 79-100 14-35 (181)
479 2cjw_A GTP-binding protein GEM 95.9 0.0022 7.4E-08 52.5 1.3 22 79-100 8-29 (192)
480 3a4m_A L-seryl-tRNA(SEC) kinas 95.9 0.0021 7.3E-08 55.5 1.3 26 76-101 3-28 (260)
481 3t5d_A Septin-7; GTP-binding p 95.9 0.002 6.9E-08 56.0 1.1 22 79-100 10-31 (274)
482 1wf3_A GTP-binding protein; GT 95.9 0.0024 8.1E-08 56.6 1.5 22 79-100 9-30 (301)
483 2p65_A Hypothetical protein PF 95.9 0.0036 1.2E-07 50.1 2.5 26 77-102 43-68 (187)
484 2bov_A RAla, RAS-related prote 95.9 0.0023 7.7E-08 52.4 1.3 22 79-100 16-37 (206)
485 2xtp_A GTPase IMAP family memb 95.8 0.0022 7.5E-08 55.1 1.2 23 79-101 24-46 (260)
486 1m7b_A RND3/RHOE small GTP-bin 95.8 0.0023 7.8E-08 51.7 1.2 22 79-100 9-30 (184)
487 2gf9_A RAS-related protein RAB 95.8 0.0023 8E-08 51.8 1.3 23 79-101 24-46 (189)
488 1nrj_B SR-beta, signal recogni 95.8 0.0023 8E-08 53.0 1.3 23 79-101 14-36 (218)
489 1ksh_A ARF-like protein 2; sma 95.8 0.0024 8.2E-08 51.4 1.3 24 77-100 18-41 (186)
490 2fg5_A RAB-22B, RAS-related pr 95.8 0.0023 8E-08 52.0 1.2 23 79-101 25-47 (192)
491 2h57_A ADP-ribosylation factor 95.8 0.0022 7.6E-08 52.0 1.0 23 79-101 23-45 (190)
492 3iev_A GTP-binding protein ERA 95.8 0.0026 8.7E-08 56.5 1.5 23 78-100 11-33 (308)
493 3t1o_A Gliding protein MGLA; G 95.8 0.0026 9E-08 51.4 1.5 24 79-102 16-39 (198)
494 2grj_A Dephospho-COA kinase; T 95.8 0.0026 9E-08 52.4 1.5 25 76-100 11-35 (192)
495 1vg8_A RAS-related protein RAB 95.8 0.0025 8.4E-08 52.3 1.3 23 79-101 10-32 (207)
496 2fu5_C RAS-related protein RAB 95.8 0.0027 9.4E-08 50.9 1.5 21 79-99 10-30 (183)
497 2gf0_A GTP-binding protein DI- 95.8 0.0024 8.3E-08 51.9 1.2 22 79-100 10-31 (199)
498 3cnl_A YLQF, putative uncharac 95.8 0.0036 1.2E-07 54.2 2.3 36 68-103 89-125 (262)
499 3kkq_A RAS-related protein M-R 95.8 0.0025 8.7E-08 51.1 1.3 22 79-100 20-41 (183)
500 3tkl_A RAS-related protein RAB 95.8 0.0025 8.7E-08 51.6 1.3 23 79-101 18-40 (196)
No 1
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=1.4e-37 Score=284.12 Aligned_cols=180 Identities=17% Similarity=0.176 Sum_probs=138.6
Q ss_pred hHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCc----hh-----hhHHHHHHHhhhhhccc
Q psy2071 64 FEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQP----RR-----VAAMSVAQRVSEEMDCQ 134 (302)
Q Consensus 64 ~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~----~~-----~~~~~~~~~~~~~~~~~ 134 (302)
..+++++++.|++||+++|+||||||||||+++|+|+++|++|+|.++|.+. .. .....+.|.....+..+
T Consensus 17 ~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~l~p~lt 96 (359)
T 3fvq_A 17 TPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFPHLT 96 (359)
T ss_dssp EEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCCEEECTTCCCCTTSC
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCEEEEeCCCcCCCCCC
Confidence 3457889999999999999999999999999999999999999999988654 11 11111223333344567
Q ss_pred cccceeeeeeecCC-------------------CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH
Q psy2071 135 LGQEVGYSIRFEDC-------------------SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM 195 (302)
Q Consensus 135 ~~~~v~~~~~~~~~-------------------~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~ 195 (302)
+.+++.|....... ...++.+..||||||||++|||||+.+|++||||| |++++|+..
T Consensus 97 V~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~lLLLDE---Pts~LD~~~ 173 (359)
T 3fvq_A 97 VYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELILLDE---PFSALDEQL 173 (359)
T ss_dssp HHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEES---TTTTSCHHH
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeC---CcccCCHHH
Confidence 88888775432111 12345677899999999999999999999999999 999999887
Q ss_pred -HHHHHHH-HHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC----CccceeecC
Q psy2071 196 -GVLKEVI-KQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT----HPVEIFYTP 247 (302)
Q Consensus 196 -~~l~~ll-~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~----~~~~~~~~~ 247 (302)
..+.+.+ +..++.|+|+|++|||++++..+||++++|+ .|+. .|.+++..|
T Consensus 174 r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~-~G~i~~~g~~~el~~~p 230 (359)
T 3fvq_A 174 RRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMK-QGRILQTASPHELYRQP 230 (359)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEE-TTEEEEEECHHHHHHSC
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEE-CCEEEEEeCHHHHHhCc
Confidence 5565544 4445568999999999999999999999998 5553 555555444
No 2
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=2.5e-37 Score=282.69 Aligned_cols=179 Identities=17% Similarity=0.205 Sum_probs=138.1
Q ss_pred HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHH---H---HHHhhh----hhccc
Q psy2071 65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMS---V---AQRVSE----EMDCQ 134 (302)
Q Consensus 65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~---~---~~~~~~----~~~~~ 134 (302)
.+++++++.|++|++++|+||||||||||+++|+|+++|++|+|.++|.+........ . ..++++ ....+
T Consensus 42 ~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~T 121 (366)
T 3tui_C 42 QALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRT 121 (366)
T ss_dssp EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHHHHTTEEEECSSCCCCTTSC
T ss_pred EEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCccCCCCC
Confidence 3578999999999999999999999999999999999999999999997653221111 0 111222 23456
Q ss_pred cccceeeeeeecCC-------------------CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH
Q psy2071 135 LGQEVGYSIRFEDC-------------------SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM 195 (302)
Q Consensus 135 ~~~~v~~~~~~~~~-------------------~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~ 195 (302)
+.+++.+....... ...++.+..||||||||++|||||+.+|++||||| ||+++|+..
T Consensus 122 V~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~~P~lLLlDE---PTs~LD~~~ 198 (366)
T 3tui_C 122 VFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQ---ATSALDPAT 198 (366)
T ss_dssp HHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTTCCSEEEEES---TTTTSCHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEEC---CCccCCHHH
Confidence 67776654322111 12345667899999999999999999999999999 999999888
Q ss_pred -HHHHHHHHHcC-CCcEEEEEEecCHHHHHhhccCCCeeeecCcC----CccceeecC
Q psy2071 196 -GVLKEVIKQRA-DLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT----HPVEIFYTP 247 (302)
Q Consensus 196 -~~l~~ll~~~~-~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~----~~~~~~~~~ 247 (302)
..+.+++++.. +.|+||+++|||++.+.++||++++|+ .|+. .+.+++..|
T Consensus 199 ~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~-~G~iv~~g~~~ev~~~p 255 (366)
T 3tui_C 199 TRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVIS-NGELIEQDTVSEVFSHP 255 (366)
T ss_dssp HHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEE-TTEEEECCBHHHHHSSC
T ss_pred HHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEE-CCEEEEEcCHHHHHhCC
Confidence 77888887654 458999999999999999999999998 5543 444555433
No 3
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=1.6e-37 Score=285.58 Aligned_cols=182 Identities=16% Similarity=0.203 Sum_probs=141.4
Q ss_pred ChhHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhh-----HHHHHHHhhhhhccccc
Q psy2071 62 PVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVA-----AMSVAQRVSEEMDCQLG 136 (302)
Q Consensus 62 p~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~-----~~~~~~~~~~~~~~~~~ 136 (302)
+...+++++++.|++||+++|+||||||||||+++|+|+++|++|+|.+.|.+..... ...+.|.....+..++.
T Consensus 14 g~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig~VfQ~~~l~p~ltV~ 93 (381)
T 3rlf_A 14 GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVA 93 (381)
T ss_dssp TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCEEEECTTCCCCTTSCHH
T ss_pred CCEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHHCCEEEEecCCcCCCCCCHH
Confidence 3344678899999999999999999999999999999999999999999987542211 11222333334456778
Q ss_pred cceeeeeeecCC-------------------CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-H
Q psy2071 137 QEVGYSIRFEDC-------------------SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-G 196 (302)
Q Consensus 137 ~~v~~~~~~~~~-------------------~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~ 196 (302)
+++.|..+.... ...++.+..||||||||++|||||+.+|++||||| |+++||+.. .
T Consensus 94 eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDE---Pts~LD~~~~~ 170 (381)
T 3rlf_A 94 ENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDE---PLSNLDAALRV 170 (381)
T ss_dssp HHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEES---TTTTSCHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEEC---CCcCCCHHHHH
Confidence 887765432211 12345677899999999999999999999999999 999999887 6
Q ss_pred HHHHHHHHcC-CCcEEEEEEecCHHHHHhhccCCCeeeecCcC----CccceeecC
Q psy2071 197 VLKEVIKQRA-DLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT----HPVEIFYTP 247 (302)
Q Consensus 197 ~l~~ll~~~~-~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~----~~~~~~~~~ 247 (302)
.+.+++++.. +.|+|+|++|||++++..+||++++|+ .|+. .|.+++..|
T Consensus 171 ~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~-~G~i~~~g~~~~l~~~p 225 (381)
T 3rlf_A 171 QMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLD-AGRVAQVGKPLELYHYP 225 (381)
T ss_dssp HHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEE-TTEEEEEECHHHHHHCC
T ss_pred HHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEE-CCEEEEEeCHHHHHhCC
Confidence 6777777653 448999999999999999999999998 5653 555555444
No 4
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=2.3e-36 Score=267.96 Aligned_cols=169 Identities=18% Similarity=0.213 Sum_probs=131.7
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCch--hhhHHHHHH---Hhhh-----hhcccc
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPR--RVAAMSVAQ---RVSE-----EMDCQL 135 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~--~~~~~~~~~---~~~~-----~~~~~~ 135 (302)
+++++++.|++|++++|+||||||||||+++|+|+++|++|+|.++|.+.. ......... .+.+ .+..++
T Consensus 23 ~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ig~v~Q~~~~~~~~~tv 102 (275)
T 3gfo_A 23 ALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASV 102 (275)
T ss_dssp EEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHSEEEECSSGGGTCCSSBH
T ss_pred EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhCcEEEEEcCcccccccCcH
Confidence 578899999999999999999999999999999999999999999997652 111111111 1222 123456
Q ss_pred ccceeeeeeecC-------------------CCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-
Q psy2071 136 GQEVGYSIRFED-------------------CSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM- 195 (302)
Q Consensus 136 ~~~v~~~~~~~~-------------------~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~- 195 (302)
.+++.+...... ....++.+..|||||+||++||+||+.+|++||||| ||+++|+..
T Consensus 103 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~~P~lLlLDE---Pts~LD~~~~ 179 (275)
T 3gfo_A 103 YQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDE---PTAGLDPMGV 179 (275)
T ss_dssp HHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTTCCSEEEEEC---TTTTCCHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEEC---ccccCCHHHH
Confidence 666554321111 112345677899999999999999999999999999 999999887
Q ss_pred HHHHHHHHHcC-CCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 196 GVLKEVIKQRA-DLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 196 ~~l~~ll~~~~-~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
..+.+++.... +.|.|||++|||++++..+||++++|+ .|+.
T Consensus 180 ~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~-~G~i 222 (275)
T 3gfo_A 180 SEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMK-EGRV 222 (275)
T ss_dssp HHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEE-TTEE
T ss_pred HHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEE-CCEE
Confidence 77888887654 448999999999999999999999998 6654
No 5
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=6.7e-36 Score=264.11 Aligned_cols=170 Identities=15% Similarity=0.178 Sum_probs=132.0
Q ss_pred HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHH---hhh----hhcccccc
Q psy2071 65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQR---VSE----EMDCQLGQ 137 (302)
Q Consensus 65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~---~~~----~~~~~~~~ 137 (302)
.+++++++.|++|++++|+||||||||||+++|+|+++|++|++.+.|.+............ +.+ .+..++.+
T Consensus 25 ~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e 104 (266)
T 4g1u_C 25 ALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRAVMRQYSELAFPFSVSE 104 (266)
T ss_dssp EEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEEEECSCCCCCSCCBHHH
T ss_pred eEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEEEEecCCccCCCCCHHH
Confidence 45788999999999999999999999999999999999999999999976543222111111 111 12345555
Q ss_pred ceeeeeee-----------------cCCCCccccccccCHHHHHHHhccccCCC------CCcEEEEcCCCCCCcchHHH
Q psy2071 138 EVGYSIRF-----------------EDCSSPKTVLKYMTDGMLLREGMSDPMLE------NYQVILLDEAHERTLATDIL 194 (302)
Q Consensus 138 ~v~~~~~~-----------------~~~~~~~~~~~~lS~G~~qr~~la~al~~------~p~lliLDE~~~p~~~lD~~ 194 (302)
++.+.... ......++.+..|||||+||++|||||+. +|++||||| ||+++|+.
T Consensus 105 ~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDE---Pts~LD~~ 181 (266)
T 4g1u_C 105 VIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDE---PTSALDLY 181 (266)
T ss_dssp HHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECC---CCSSCCHH
T ss_pred HHHhhhhhcCcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeC---ccccCCHH
Confidence 55443211 11112345677899999999999999999 999999999 99999988
Q ss_pred H-HHHHHHHHHcC-CCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 195 M-GVLKEVIKQRA-DLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 195 ~-~~l~~ll~~~~-~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
. ..+.++++... +.+.||+++|||++++..+||++++|+ .|+.
T Consensus 182 ~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~-~G~i 226 (266)
T 4g1u_C 182 HQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLA-QGKL 226 (266)
T ss_dssp HHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEE-TTEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEE-CCEE
Confidence 7 77888887654 346899999999999999999999998 6654
No 6
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=2.4e-36 Score=262.54 Aligned_cols=168 Identities=14% Similarity=0.141 Sum_probs=129.0
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHH-------HHHHhhh----hhccc
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMS-------VAQRVSE----EMDCQ 134 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~-------~~~~~~~----~~~~~ 134 (302)
+++++++.|++|++++|+||||||||||+++|+|+++|++|++.+.|.+........ ....+.+ ....+
T Consensus 20 ~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~~t 99 (235)
T 3tif_A 20 ALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLT 99 (235)
T ss_dssp EEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTTSC
T ss_pred eEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHhhccEEEEecCCccCCCCc
Confidence 467889999999999999999999999999999999999999999987643221111 0111222 22346
Q ss_pred cccceeeeeee---------------------cCCCC--ccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcch
Q psy2071 135 LGQEVGYSIRF---------------------EDCSS--PKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLAT 191 (302)
Q Consensus 135 ~~~~v~~~~~~---------------------~~~~~--~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~l 191 (302)
+.+++.+.... ..... .++.+..|||||+||++|||||+.+|++||||| ||+++
T Consensus 100 v~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDE---Pts~L 176 (235)
T 3tif_A 100 ALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQ---PTWAL 176 (235)
T ss_dssp HHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEES---TTTTS
T ss_pred HHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeC---CcccC
Confidence 66665442110 01111 245678899999999999999999999999999 99999
Q ss_pred HHHH-HHHHHHHHHcCC-CcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 192 DILM-GVLKEVIKQRAD-LKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 192 D~~~-~~l~~ll~~~~~-~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
|+.. ..+.+++....+ .|.|||++|||++. ..+||++++|+ .|+.
T Consensus 177 D~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~-~~~~d~i~~l~-~G~i 223 (235)
T 3tif_A 177 DSKTGEKIMQLLKKLNEEDGKTVVVVTHDINV-ARFGERIIYLK-DGEV 223 (235)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCEEEEECSCHHH-HTTSSEEEEEE-TTEE
T ss_pred CHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHH-HHhCCEEEEEE-CCEE
Confidence 9887 778888876644 38999999999995 58999999998 7764
No 7
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=3.1e-36 Score=275.29 Aligned_cols=178 Identities=17% Similarity=0.191 Sum_probs=136.7
Q ss_pred HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhh-----hHHHHHHHhhhhhccccccce
Q psy2071 65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRV-----AAMSVAQRVSEEMDCQLGQEV 139 (302)
Q Consensus 65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~v 139 (302)
.+++++++.|++|++++|+||||||||||+++|+|+++|++|++.++|.+.... ....+.+........++.+++
T Consensus 29 ~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni 108 (355)
T 1z47_A 29 RSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNVGLVFQNYALFQHMTVYDNV 108 (355)
T ss_dssp TCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSSEEEECGGGCCCTTSCHHHHH
T ss_pred EEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChhhCcEEEEecCcccCCCCCHHHHH
Confidence 357889999999999999999999999999999999999999999988654211 111122222233455777777
Q ss_pred eeeeeecC-------------------CCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHH
Q psy2071 140 GYSIRFED-------------------CSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLK 199 (302)
Q Consensus 140 ~~~~~~~~-------------------~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~ 199 (302)
.|..+... ....++.+..|||||+||++|||||+.+|++||||| |++++|+.. ..+.
T Consensus 109 ~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDE---P~s~LD~~~r~~l~ 185 (355)
T 1z47_A 109 SFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDE---PFAAIDTQIRRELR 185 (355)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEES---TTCCSSHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC---CcccCCHHHHHHHH
Confidence 66432211 012345677899999999999999999999999999 999999887 6777
Q ss_pred HHHHHcC-CCcEEEEEEecCHHHHHhhccCCCeeeecCcC----Cccceeec
Q psy2071 200 EVIKQRA-DLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT----HPVEIFYT 246 (302)
Q Consensus 200 ~ll~~~~-~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~----~~~~~~~~ 246 (302)
+++++.. +.|.|+|++|||++++..+||++++|+ .|+. .|.+++..
T Consensus 186 ~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~-~G~i~~~g~~~~l~~~ 236 (355)
T 1z47_A 186 TFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLH-EGNVEQFGTPEEVYEK 236 (355)
T ss_dssp HHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEE-TTEEEEEECHHHHHHS
T ss_pred HHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEE-CCEEEEEcCHHHHHhC
Confidence 7777653 348899999999999999999999998 6653 45454433
No 8
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=1.3e-35 Score=261.58 Aligned_cols=170 Identities=17% Similarity=0.181 Sum_probs=130.5
Q ss_pred HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCch----hh-hHHHHHHHhhh----hhcccc
Q psy2071 65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPR----RV-AAMSVAQRVSE----EMDCQL 135 (302)
Q Consensus 65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~----~~-~~~~~~~~~~~----~~~~~~ 135 (302)
.+++++++.|++|++++|+||||||||||+++|+|+++|++|++.++|.+.. .. ........+.+ ....++
T Consensus 38 ~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv 117 (263)
T 2olj_A 38 EVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTV 117 (263)
T ss_dssp EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHHEEEECSSCCCCTTSCH
T ss_pred EEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCcEEEEeCCCcCCCCCCH
Confidence 3578899999999999999999999999999999999999999999986542 00 00111111222 123355
Q ss_pred ccceeeee-ee-------------------cCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH
Q psy2071 136 GQEVGYSI-RF-------------------EDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM 195 (302)
Q Consensus 136 ~~~v~~~~-~~-------------------~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~ 195 (302)
.+++.+.. .. ......++.+..|||||+||++||+||+.+|++||||| ||+++|+..
T Consensus 118 ~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~~p~lllLDE---Pts~LD~~~ 194 (263)
T 2olj_A 118 LNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDE---PTSALDPEM 194 (263)
T ss_dssp HHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEES---TTTTSCHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHCCCCEEEEeC---CcccCCHHH
Confidence 55554421 10 00012345667899999999999999999999999999 999999888
Q ss_pred -HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 196 -GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 196 -~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
..+.++++...+.|.|||++|||++.+..+||++++|+ .|+.
T Consensus 195 ~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~-~G~i 237 (263)
T 2olj_A 195 VGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMD-GGYI 237 (263)
T ss_dssp HHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEE-TTEE
T ss_pred HHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEE-CCEE
Confidence 77888887765448999999999999999999999998 6653
No 9
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=1.3e-35 Score=256.04 Aligned_cols=168 Identities=11% Similarity=0.035 Sum_probs=128.4
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHH-------HHHHHhhh----hhccc
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAM-------SVAQRVSE----EMDCQ 134 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~-------~~~~~~~~----~~~~~ 134 (302)
+++++++.|++|++++|+||||||||||+++|+|+++|++|++.+.|.+....... .....+.+ ....+
T Consensus 19 ~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~t 98 (224)
T 2pcj_A 19 ILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPELT 98 (224)
T ss_dssp EEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHHHHEEEECSSCCCCTTSC
T ss_pred eEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHhCcEEEEecCcccCCCCC
Confidence 46788999999999999999999999999999999999999999988654321110 00111122 12335
Q ss_pred cccceeeeeee-------------------cCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH
Q psy2071 135 LGQEVGYSIRF-------------------EDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM 195 (302)
Q Consensus 135 ~~~~v~~~~~~-------------------~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~ 195 (302)
+.+++.+.... ......++.+..|||||+||++||+||+.+|++||||| ||+++|+..
T Consensus 99 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDE---Pt~~LD~~~ 175 (224)
T 2pcj_A 99 ALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADE---PTGNLDSAN 175 (224)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTTCCSEEEEES---TTTTCCHHH
T ss_pred HHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeC---CCCCCCHHH
Confidence 55555432211 11112345677899999999999999999999999999 999999887
Q ss_pred -HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 196 -GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 196 -~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
..+.+++....+.|.||+++|||++.+ .+||++++|+ .|+.
T Consensus 176 ~~~~~~~l~~l~~~g~tvi~vtHd~~~~-~~~d~v~~l~-~G~i 217 (224)
T 2pcj_A 176 TKRVMDIFLKINEGGTSIVMVTHERELA-ELTHRTLEMK-DGKV 217 (224)
T ss_dssp HHHHHHHHHHHHHTTCEEEEECSCHHHH-TTSSEEEEEE-TTEE
T ss_pred HHHHHHHHHHHHHCCCEEEEEcCCHHHH-HhCCEEEEEE-CCEE
Confidence 778888876654488999999999987 8999999998 6653
No 10
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=1.2e-35 Score=262.00 Aligned_cols=169 Identities=17% Similarity=0.125 Sum_probs=130.1
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchh----------h------hHHHHHHHhhh
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRR----------V------AAMSVAQRVSE 129 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~----------~------~~~~~~~~~~~ 129 (302)
+++++++.|++|++++|+||||||||||+++|+|+++|++|++.+.|.+... . ........+.+
T Consensus 21 vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~Q 100 (262)
T 1b0u_A 21 VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQ 100 (262)
T ss_dssp EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHEEEECS
T ss_pred EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccccChhhHHHHhcceEEEec
Confidence 4678899999999999999999999999999999999999999998865420 0 00111111222
Q ss_pred ----hhccccccceeeee-ee------------------cCC-CC-ccccccccCHHHHHHHhccccCCCCCcEEEEcCC
Q psy2071 130 ----EMDCQLGQEVGYSI-RF------------------EDC-SS-PKTVLKYMTDGMLLREGMSDPMLENYQVILLDEA 184 (302)
Q Consensus 130 ----~~~~~~~~~v~~~~-~~------------------~~~-~~-~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~ 184 (302)
....++.+++.+.. .. ... .. .++.+..|||||+||++||+||+.+|++|||||
T Consensus 101 ~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDE- 179 (262)
T 1b0u_A 101 HFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDE- 179 (262)
T ss_dssp SCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHHHHHHHTCCSEEEEES-
T ss_pred CcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC-
Confidence 12335555554421 00 001 12 355677899999999999999999999999999
Q ss_pred CCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 185 HERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 185 ~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
||+++|+.. ..+.+++....+.|.|||++|||++.+..+||++++|+ .|+.
T Consensus 180 --Pts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~-~G~i 231 (262)
T 1b0u_A 180 --PTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLH-QGKI 231 (262)
T ss_dssp --TTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEE-TTEE
T ss_pred --CCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEE-CCEE
Confidence 999999887 77888887665448899999999999999999999998 6653
No 11
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=4.4e-36 Score=275.13 Aligned_cols=178 Identities=17% Similarity=0.236 Sum_probs=136.8
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhh-----HHHHHHHhhhhhcccccccee
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVA-----AMSVAQRVSEEMDCQLGQEVG 140 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~v~ 140 (302)
+++++++.|++|++++|+||||||||||+++|+|+++|++|++.++|.+..... ...+.+........++.+++.
T Consensus 18 vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~ 97 (362)
T 2it1_A 18 ALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLVFQNWALYPHMTVYKNIA 97 (362)
T ss_dssp EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECTTCCCCTTSCHHHHHH
T ss_pred EEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCcEEEEecCcccCCCCCHHHHHH
Confidence 567889999999999999999999999999999999999999999886542211 111122222234456777776
Q ss_pred eeeeecC-------------------CCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHH
Q psy2071 141 YSIRFED-------------------CSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKE 200 (302)
Q Consensus 141 ~~~~~~~-------------------~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ 200 (302)
|..+... ....++.+..|||||+||++|||||+.+|++||||| |++++|+.. ..+.+
T Consensus 98 ~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDE---P~s~LD~~~r~~l~~ 174 (362)
T 2it1_A 98 FPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDE---PLSNLDALLRLEVRA 174 (362)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEES---GGGGSCHHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEEC---ccccCCHHHHHHHHH
Confidence 6432111 112355677899999999999999999999999999 999999887 67777
Q ss_pred HHHHcC-CCcEEEEEEecCHHHHHhhccCCCeeeecCcC----CccceeecC
Q psy2071 201 VIKQRA-DLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT----HPVEIFYTP 247 (302)
Q Consensus 201 ll~~~~-~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~----~~~~~~~~~ 247 (302)
++++.. +.|.|+|++|||++++..+||++++|+ .|+. .|.+++..|
T Consensus 175 ~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~-~G~i~~~g~~~~~~~~p 225 (362)
T 2it1_A 175 ELKRLQKELGITTVYVTHDQAEALAMADRIAVIR-EGEILQVGTPDEVYYKP 225 (362)
T ss_dssp HHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEE-TTEEEEEECHHHHHHSC
T ss_pred HHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEE-CCEEEEEcCHHHHHhCc
Confidence 777653 348899999999999999999999998 6653 455554433
No 12
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=1.5e-35 Score=271.37 Aligned_cols=178 Identities=16% Similarity=0.220 Sum_probs=136.8
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhh-----HHHHHHHhhhhhcccccccee
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVA-----AMSVAQRVSEEMDCQLGQEVG 140 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~v~ 140 (302)
+++++++.|++|++++|+||||||||||+++|+|+++|++|++.++|.+..... ...+.+........++.+++.
T Consensus 18 vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~ 97 (359)
T 2yyz_A 18 AVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMVFQNYALYPHMTVFENIA 97 (359)
T ss_dssp EEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECSSCCCCTTSCHHHHHH
T ss_pred EEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHHH
Confidence 567889999999999999999999999999999999999999999886542211 111122222234557777777
Q ss_pred eeeeecCC-------------------CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHH
Q psy2071 141 YSIRFEDC-------------------SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKE 200 (302)
Q Consensus 141 ~~~~~~~~-------------------~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ 200 (302)
|..+.... ...++.+..|||||+||++|||||+.+|++||||| |++++|+.. ..+.+
T Consensus 98 ~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLDE---P~s~LD~~~r~~l~~ 174 (359)
T 2yyz_A 98 FPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDE---PLSNLDANLRMIMRA 174 (359)
T ss_dssp GGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEES---TTTTSCHHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEEC---CcccCCHHHHHHHHH
Confidence 65432110 12345667899999999999999999999999999 999999887 67777
Q ss_pred HHHHcC-CCcEEEEEEecCHHHHHhhccCCCeeeecCcC----CccceeecC
Q psy2071 201 VIKQRA-DLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT----HPVEIFYTP 247 (302)
Q Consensus 201 ll~~~~-~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~----~~~~~~~~~ 247 (302)
++++.. +.|.|+|++|||++++..+||++++|+ .|+. .|.+++..|
T Consensus 175 ~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~-~G~i~~~g~~~~l~~~p 225 (359)
T 2yyz_A 175 EIKHLQQELGITSVYVTHDQAEAMTMASRIAVFN-QGKLVQYGTPDEVYDSP 225 (359)
T ss_dssp HHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEE-TTEEEEEECHHHHHHSC
T ss_pred HHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEE-CCEEEEeCCHHHHHhCc
Confidence 776653 348899999999999999999999998 6653 455554433
No 13
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=3.5e-36 Score=275.45 Aligned_cols=177 Identities=14% Similarity=0.147 Sum_probs=135.3
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchh-----h-----hHHHHHHHhhhhhcccc
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRR-----V-----AAMSVAQRVSEEMDCQL 135 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~-----~-----~~~~~~~~~~~~~~~~~ 135 (302)
+++++++.|++|++++|+||||||||||+++|+|+++|++|++.++|.+... . ....+.+........++
T Consensus 20 vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv 99 (353)
T 1oxx_K 20 ALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTA 99 (353)
T ss_dssp EEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTSCH
T ss_pred eEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhhCCEEEEeCCCccCCCCCH
Confidence 5678899999999999999999999999999999999999999998855321 1 11111222222345577
Q ss_pred ccceeeeeeecCC-------------------CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-
Q psy2071 136 GQEVGYSIRFEDC-------------------SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM- 195 (302)
Q Consensus 136 ~~~v~~~~~~~~~-------------------~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~- 195 (302)
.+++.|..+.... ...++.+..|||||+||++|||||+.+|++||||| |++++|+..
T Consensus 100 ~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~~P~lLLLDE---P~s~LD~~~r 176 (353)
T 1oxx_K 100 FENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDE---PFSNLDARMR 176 (353)
T ss_dssp HHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEES---TTTTSCGGGH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEEC---CcccCCHHHH
Confidence 7777665422110 12345667899999999999999999999999999 999999777
Q ss_pred HHHHHHHHHcC-CCcEEEEEEecCHHHHHhhccCCCeeeecCcC----Cccceeec
Q psy2071 196 GVLKEVIKQRA-DLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT----HPVEIFYT 246 (302)
Q Consensus 196 ~~l~~ll~~~~-~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~----~~~~~~~~ 246 (302)
..+.+++++.. +.|.|+|++|||++++..+||++++|+ .|+. .|.+++..
T Consensus 177 ~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~-~G~i~~~g~~~~l~~~ 231 (353)
T 1oxx_K 177 DSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLV-KGKLVQVGKPEDLYDN 231 (353)
T ss_dssp HHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEE-TTEEEEEECHHHHHHS
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEE-CCEEEEEcCHHHHHhC
Confidence 66777776553 348899999999999999999999998 6653 45555443
No 14
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=3.1e-35 Score=258.35 Aligned_cols=168 Identities=18% Similarity=0.203 Sum_probs=129.7
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHH---HHhhh----hhccccccc
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVA---QRVSE----EMDCQLGQE 138 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~---~~~~~----~~~~~~~~~ 138 (302)
+++++++.|++|++++|+||||||||||+++|+|+++|++|++.+.|.+..... .... .++.+ ....++.++
T Consensus 30 vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~-~~~~~~i~~v~q~~~l~~~ltv~en 108 (256)
T 1vpl_A 30 ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEP-HEVRKLISYLPEEAGAYRNMQGIEY 108 (256)
T ss_dssp EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCH-HHHHTTEEEECTTCCCCTTSBHHHH
T ss_pred EEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccH-HHHhhcEEEEcCCCCCCCCCcHHHH
Confidence 577889999999999999999999999999999999999999999886543210 0011 11111 123355555
Q ss_pred eeeeeee-------------------cCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHH
Q psy2071 139 VGYSIRF-------------------EDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVL 198 (302)
Q Consensus 139 v~~~~~~-------------------~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l 198 (302)
+.+.... ......++.+..|||||+||++||+||+.+|++||||| ||+++|+.. ..+
T Consensus 109 l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDE---Pts~LD~~~~~~l 185 (256)
T 1vpl_A 109 LRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDE---PTSGLDVLNAREV 185 (256)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEES---TTTTCCHHHHHHH
T ss_pred HHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeC---CccccCHHHHHHH
Confidence 5432111 00112345677899999999999999999999999999 999999887 778
Q ss_pred HHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 199 KEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 199 ~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
.+++....+.|.|||++|||++.+..+||++++|+ .|+.
T Consensus 186 ~~~l~~l~~~g~tiiivtHd~~~~~~~~d~v~~l~-~G~i 224 (256)
T 1vpl_A 186 RKILKQASQEGLTILVSSHNMLEVEFLCDRIALIH-NGTI 224 (256)
T ss_dssp HHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEE-TTEE
T ss_pred HHHHHHHHhCCCEEEEEcCCHHHHHHHCCEEEEEE-CCEE
Confidence 88887765558899999999999999999999998 6653
No 15
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=2.2e-35 Score=271.50 Aligned_cols=179 Identities=17% Similarity=0.220 Sum_probs=135.8
Q ss_pred HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhh-----hHHHHHHHhhhhhccccccce
Q psy2071 65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRV-----AAMSVAQRVSEEMDCQLGQEV 139 (302)
Q Consensus 65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~v 139 (302)
.+++++++.|++|++++|+|||||||||||++|+|+++|++|++.++|.+.... ....+.+........++.+++
T Consensus 25 ~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni 104 (372)
T 1v43_A 25 TAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENI 104 (372)
T ss_dssp EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEEC------CCCHHHHH
T ss_pred EEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHH
Confidence 357889999999999999999999999999999999999999999998654221 111122222334456778887
Q ss_pred eeeeeecCC-------------------CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHH
Q psy2071 140 GYSIRFEDC-------------------SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLK 199 (302)
Q Consensus 140 ~~~~~~~~~-------------------~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~ 199 (302)
.|..+.... ...++.+..|||||+||++|||||+.+|++||||| |++++|+.. ..+.
T Consensus 105 ~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDE---P~s~LD~~~r~~l~ 181 (372)
T 1v43_A 105 AFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDE---PLSNLDAKLRVAMR 181 (372)
T ss_dssp HTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEES---TTTTSCHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC---CCccCCHHHHHHHH
Confidence 765432111 11245567799999999999999999999999999 999999887 6777
Q ss_pred HHHHHcC-CCcEEEEEEecCHHHHHhhccCCCeeeecCcC----CccceeecC
Q psy2071 200 EVIKQRA-DLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT----HPVEIFYTP 247 (302)
Q Consensus 200 ~ll~~~~-~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~----~~~~~~~~~ 247 (302)
+++++.. +.|.|+|++|||++++..+||++++|+ .|+. .|.+++..|
T Consensus 182 ~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~-~G~i~~~g~~~~l~~~p 233 (372)
T 1v43_A 182 AEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMN-RGQLLQIGSPTEVYLRP 233 (372)
T ss_dssp HHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEE-TTEEEEEECHHHHHHCC
T ss_pred HHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEE-CCEEEEeCCHHHHHhCc
Confidence 7777653 348899999999999999999999998 6653 455554433
No 16
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=3.3e-35 Score=258.72 Aligned_cols=169 Identities=11% Similarity=0.052 Sum_probs=129.9
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhH----H----HHHHHhhhhhcccccc
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAA----M----SVAQRVSEEMDCQLGQ 137 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~----~----~~~~~~~~~~~~~~~~ 137 (302)
+++++++.|++|++++|+||||||||||+++|+|+++|++|++.++|.+...... . .+.+........++.+
T Consensus 22 vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e 101 (257)
T 1g6h_A 22 ALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLE 101 (257)
T ss_dssp EEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGGSBHHH
T ss_pred eEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEccCCccCCCCcHHH
Confidence 5778999999999999999999999999999999999999999999865432110 0 0111111122345555
Q ss_pred ceeeeeee--------------------------------cCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCC
Q psy2071 138 EVGYSIRF--------------------------------EDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAH 185 (302)
Q Consensus 138 ~v~~~~~~--------------------------------~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~ 185 (302)
++.+.... ......++.+..|||||+||++||+||+.+|++|||||
T Consensus 102 nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDE-- 179 (257)
T 1g6h_A 102 NLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDE-- 179 (257)
T ss_dssp HHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEES--
T ss_pred HHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHHHHHHHHHHHHHcCCCEEEEeC--
Confidence 55442211 00011245567799999999999999999999999999
Q ss_pred CCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 186 ERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 186 ~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
||+++|+.. ..+.+++++..+.|.|||++|||++++..+||++++|+ .|+.
T Consensus 180 -Pts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~-~G~i 231 (257)
T 1g6h_A 180 -PIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMF-NGQI 231 (257)
T ss_dssp -TTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEE-TTEE
T ss_pred -CccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEE-CCEE
Confidence 999999887 77888887765458999999999999999999999998 6653
No 17
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=3.1e-35 Score=256.37 Aligned_cols=169 Identities=14% Similarity=0.128 Sum_probs=129.1
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHH----HHHhhh----hhcccccc
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSV----AQRVSE----EMDCQLGQ 137 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~----~~~~~~----~~~~~~~~ 137 (302)
+++++++.|++|++++|+||||||||||+++|+|+++|++|++.+.|.+......... ..++.+ ....++.+
T Consensus 21 vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~e 100 (240)
T 1ji0_A 21 AIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYE 100 (240)
T ss_dssp EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTTSBHHH
T ss_pred EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCEEEEecCCccCCCCcHHH
Confidence 4678899999999999999999999999999999999999999999876432111100 111111 12335555
Q ss_pred ceeeeee------------------e-cCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HH
Q psy2071 138 EVGYSIR------------------F-EDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GV 197 (302)
Q Consensus 138 ~v~~~~~------------------~-~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~ 197 (302)
++.+... + ......++.+..|||||+||++||+||+.+|++||||| ||+++|+.. ..
T Consensus 101 nl~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDE---Pts~LD~~~~~~ 177 (240)
T 1ji0_A 101 NLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDE---PSLGLAPILVSE 177 (240)
T ss_dssp HHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEEC---TTTTCCHHHHHH
T ss_pred HHHHhhhcCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcC---CcccCCHHHHHH
Confidence 5543210 0 00011244567799999999999999999999999999 999999887 77
Q ss_pred HHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 198 LKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 198 l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
+.+++....+.|.|+|++|||++++..+||++++|+ .|+.
T Consensus 178 l~~~l~~~~~~g~tvi~vtHd~~~~~~~~d~v~~l~-~G~i 217 (240)
T 1ji0_A 178 VFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLE-TGQI 217 (240)
T ss_dssp HHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEE-TTEE
T ss_pred HHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEE-CCEE
Confidence 888887665458899999999999999999999998 6653
No 18
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=1.1e-35 Score=271.29 Aligned_cols=178 Identities=19% Similarity=0.196 Sum_probs=136.9
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhh-----HHHHHHHhhhhhcccccccee
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVA-----AMSVAQRVSEEMDCQLGQEVG 140 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~v~ 140 (302)
+++++++.|++|++++|+||||||||||+++|+|+++|++|++.++|.+..... ...+.+........++.+++.
T Consensus 15 ~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~ 94 (348)
T 3d31_A 15 SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLE 94 (348)
T ss_dssp EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHHHHH
T ss_pred EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEEEEecCcccCCCCCHHHHHH
Confidence 567889999999999999999999999999999999999999999986542211 111112222233456777776
Q ss_pred eeeeec----------------CCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHH
Q psy2071 141 YSIRFE----------------DCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVIK 203 (302)
Q Consensus 141 ~~~~~~----------------~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~ 203 (302)
|..... .....++.+..|||||+||++|||||+.+|++||||| |++++|+.. ..+.++++
T Consensus 95 ~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDE---P~s~LD~~~~~~l~~~l~ 171 (348)
T 3d31_A 95 FGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDE---PLSALDPRTQENAREMLS 171 (348)
T ss_dssp HHHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEES---SSTTSCHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEEC---ccccCCHHHHHHHHHHHH
Confidence 543211 0112355677899999999999999999999999999 999999887 67777777
Q ss_pred HcC-CCcEEEEEEecCHHHHHhhccCCCeeeecCcC----CccceeecC
Q psy2071 204 QRA-DLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT----HPVEIFYTP 247 (302)
Q Consensus 204 ~~~-~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~----~~~~~~~~~ 247 (302)
+.. +.|.|+|++|||++++..+||++++|+ .|+. .|.+++..|
T Consensus 172 ~l~~~~g~tii~vTHd~~~~~~~adri~vl~-~G~i~~~g~~~~~~~~p 219 (348)
T 3d31_A 172 VLHKKNKLTVLHITHDQTEARIMADRIAVVM-DGKLIQVGKPEEIFEKP 219 (348)
T ss_dssp HHHHHTTCEEEEEESCHHHHHHHCSEEEEES-SSCEEEEECHHHHHSSC
T ss_pred HHHHhcCCEEEEEeCCHHHHHHhCCEEEEEE-CCEEEEECCHHHHHhCc
Confidence 653 458999999999999999999999998 6653 455554433
No 19
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.98 E-value=2.1e-35 Score=271.92 Aligned_cols=178 Identities=18% Similarity=0.209 Sum_probs=135.8
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchh------hh-----HHHHHHHhhhhhccc
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRR------VA-----AMSVAQRVSEEMDCQ 134 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~------~~-----~~~~~~~~~~~~~~~ 134 (302)
+++++++.|++|++++|+||||||||||+++|+|+++|++|++.++|.+... .. ...+.+........+
T Consensus 18 vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~~r~ig~v~Q~~~l~~~lt 97 (372)
T 1g29_1 18 AVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMT 97 (372)
T ss_dssp EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCCCTTSC
T ss_pred EEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHhHCCEEEEeCCCccCCCCC
Confidence 5678899999999999999999999999999999999999999998865322 11 111112222233456
Q ss_pred cccceeeeeeecC-------------------CCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH
Q psy2071 135 LGQEVGYSIRFED-------------------CSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM 195 (302)
Q Consensus 135 ~~~~v~~~~~~~~-------------------~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~ 195 (302)
+.+++.|..+... ....++.+..|||||+||++|||||+.+|++||||| |++++|+..
T Consensus 98 v~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDE---P~s~LD~~~ 174 (372)
T 1g29_1 98 VYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDE---PLSNLDAKL 174 (372)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEEEEC---TTTTSCHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEECC---CCccCCHHH
Confidence 7777766432211 012345667899999999999999999999999999 999999887
Q ss_pred -HHHHHHHHHcC-CCcEEEEEEecCHHHHHhhccCCCeeeecCcC----CccceeecC
Q psy2071 196 -GVLKEVIKQRA-DLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT----HPVEIFYTP 247 (302)
Q Consensus 196 -~~l~~ll~~~~-~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~----~~~~~~~~~ 247 (302)
..+.+++++.. +.|.|+|++|||++++..+||++++|+ .|+. .|.+++..|
T Consensus 175 r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~-~G~i~~~g~~~~l~~~p 231 (372)
T 1g29_1 175 RVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMN-RGVLQQVGSPDEVYDKP 231 (372)
T ss_dssp HHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEE-TTEEEEEECHHHHHHSC
T ss_pred HHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEe-CCEEEEeCCHHHHHhCc
Confidence 66777776653 348899999999999999999999998 6653 455554433
No 20
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.97 E-value=8.4e-35 Score=253.33 Aligned_cols=167 Identities=19% Similarity=0.191 Sum_probs=127.0
Q ss_pred HHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhh-----HHHHHHHhhhhhccccccceee
Q psy2071 67 RTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVA-----AMSVAQRVSEEMDCQLGQEVGY 141 (302)
Q Consensus 67 ~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~v~~ 141 (302)
++++++.+++ ++++|+||||||||||+++|+|+++|++|++.++|.+..... ...+.+........++.+++.+
T Consensus 15 l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~ 93 (240)
T 2onk_A 15 RLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAY 93 (240)
T ss_dssp EEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHT
T ss_pred EeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCchhhCcEEEEcCCCccCCCCcHHHHHHH
Confidence 5778899999 999999999999999999999999999999999886542110 0011111111123355555543
Q ss_pred eeee-----------------cCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHH
Q psy2071 142 SIRF-----------------EDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVIK 203 (302)
Q Consensus 142 ~~~~-----------------~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~ 203 (302)
.... ......++.+..|||||+||++||+||+.+|++||||| ||+++|+.. ..+.+++.
T Consensus 94 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDE---Pts~LD~~~~~~~~~~l~ 170 (240)
T 2onk_A 94 GLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDE---PLSAVDLKTKGVLMEELR 170 (240)
T ss_dssp TCTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEES---TTSSCCHHHHHHHHHHHH
T ss_pred HHHHcCCchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeC---CcccCCHHHHHHHHHHHH
Confidence 2211 01112345677899999999999999999999999999 999999887 77888887
Q ss_pred HcCC-CcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 204 QRAD-LKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 204 ~~~~-~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
...+ .|.||+++|||++++..+||++++|+ .|+.
T Consensus 171 ~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~-~G~i 205 (240)
T 2onk_A 171 FVQREFDVPILHVTHDLIEAAMLADEVAVML-NGRI 205 (240)
T ss_dssp HHHHHHTCCEEEEESCHHHHHHHCSEEEEEE-TTEE
T ss_pred HHHHhcCCEEEEEeCCHHHHHHhCCEEEEEE-CCEE
Confidence 6543 47899999999999999999999998 6653
No 21
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.97 E-value=1.5e-33 Score=249.82 Aligned_cols=168 Identities=13% Similarity=0.129 Sum_probs=128.6
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHH---Hhhhh---hccccccce
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQ---RVSEE---MDCQLGQEV 139 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~---~~~~~---~~~~~~~~v 139 (302)
+++++++.|++|++++|+||||||||||+++|+|+++|++|+|.++|.+........... ++.+. +..++.+++
T Consensus 34 vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~enl 113 (271)
T 2ixe_A 34 VLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENI 113 (271)
T ss_dssp CEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCSSBHHHHH
T ss_pred eeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhccEEEEecCCccccccHHHHH
Confidence 578899999999999999999999999999999999999999999987653221111111 12221 123556665
Q ss_pred eeeeeecC-------------------------CCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHH
Q psy2071 140 GYSIRFED-------------------------CSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDIL 194 (302)
Q Consensus 140 ~~~~~~~~-------------------------~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~ 194 (302)
.+...... ....++....|||||+||++|||||+.+|++||||| ||+++|+.
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDE---Pts~LD~~ 190 (271)
T 2ixe_A 114 AYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDN---ATSALDAG 190 (271)
T ss_dssp HTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTTCCSEEEEES---TTTTCCHH
T ss_pred hhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhcCCCEEEEEC---CccCCCHH
Confidence 44321100 001234566799999999999999999999999999 99999988
Q ss_pred H-HHHHHHHHHcC-CCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 195 M-GVLKEVIKQRA-DLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 195 ~-~~l~~ll~~~~-~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
. ..+.+++.... +.+.|||++|||++.+. .||++++|+ .|+.
T Consensus 191 ~~~~i~~~l~~~~~~~g~tviivtHd~~~~~-~~d~v~~l~-~G~i 234 (271)
T 2ixe_A 191 NQLRVQRLLYESPEWASRTVLLITQQLSLAE-RAHHILFLK-EGSV 234 (271)
T ss_dssp HHHHHHHHHHHCTTTTTSEEEEECSCHHHHT-TCSEEEEEE-TTEE
T ss_pred HHHHHHHHHHHHHhhcCCEEEEEeCCHHHHH-hCCEEEEEE-CCEE
Confidence 8 77888888764 35889999999999886 599999998 6653
No 22
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.97 E-value=1.6e-34 Score=256.96 Aligned_cols=170 Identities=16% Similarity=0.172 Sum_probs=129.0
Q ss_pred HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCch--hhhHH-------HHHHHhh--hhhcc
Q psy2071 65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPR--RVAAM-------SVAQRVS--EEMDC 133 (302)
Q Consensus 65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~--~~~~~-------~~~~~~~--~~~~~ 133 (302)
.+++++++.|++|++++|+||||||||||+++|+|+++|++|++.+.|.+.. ..... .+.+... .....
T Consensus 35 ~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~l 114 (279)
T 2ihy_A 35 TILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGE 114 (279)
T ss_dssp EEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHTTEEEECHHHHTTSCTTS
T ss_pred EEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcCcEEEEEcCcccccCCCC
Confidence 3578899999999999999999999999999999999999999999987643 11110 1111111 11123
Q ss_pred ccccceeeeee----e-------------------cCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcc
Q psy2071 134 QLGQEVGYSIR----F-------------------EDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLA 190 (302)
Q Consensus 134 ~~~~~v~~~~~----~-------------------~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~ 190 (302)
++.+++.+... + ......++.+..|||||+||++||+||+.+|++||||| ||++
T Consensus 115 tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lLlLDE---Pts~ 191 (279)
T 2ihy_A 115 RVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDE---PAAG 191 (279)
T ss_dssp BHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEES---TTTT
T ss_pred CHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhCCCCEEEEeC---Cccc
Confidence 66666644210 0 00011245667799999999999999999999999999 9999
Q ss_pred hHHHH-HHHHHHHHHcCCCcEEE--EEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 191 TDILM-GVLKEVIKQRADLKLVI--MSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 191 lD~~~-~~l~~ll~~~~~~~~~i--i~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
+|+.. ..+.+++....+.|.|| |++|||++++..+||++++|+ .|+.
T Consensus 192 LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~l~-~G~i 241 (279)
T 2ihy_A 192 LDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLK-DGQS 241 (279)
T ss_dssp CCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGCCTTCCEEEEEE-TTEE
T ss_pred cCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHHHHhCCEEEEEE-CCEE
Confidence 99887 77888887654447788 999999999999999999998 6653
No 23
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.97 E-value=3.7e-34 Score=250.49 Aligned_cols=168 Identities=17% Similarity=0.154 Sum_probs=129.1
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHH---Hhhh----hhccccccc
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQ---RVSE----EMDCQLGQE 138 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~---~~~~----~~~~~~~~~ 138 (302)
+++++++.|++|++++|+||||||||||+++|+|+++|+ |++.+.|.+........... ++.+ ....++.++
T Consensus 15 vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~ 93 (249)
T 2qi9_C 15 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHY 93 (249)
T ss_dssp TEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCBHHHH
T ss_pred EEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceEEEECCCCccCCCCcHHHH
Confidence 467789999999999999999999999999999999999 99999987643221111111 1122 123355555
Q ss_pred eeeeeee--------------cCCCCccccccccCHHHHHHHhccccCCCCCc-------EEEEcCCCCCCcchHHHH-H
Q psy2071 139 VGYSIRF--------------EDCSSPKTVLKYMTDGMLLREGMSDPMLENYQ-------VILLDEAHERTLATDILM-G 196 (302)
Q Consensus 139 v~~~~~~--------------~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~-------lliLDE~~~p~~~lD~~~-~ 196 (302)
+.+.... ......++.+..|||||+||++||+||+.+|+ +||||| ||+++|+.. .
T Consensus 94 l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDE---Pts~LD~~~~~ 170 (249)
T 2qi9_C 94 LTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDE---PMNSLDVAQQS 170 (249)
T ss_dssp HHTTCSSTTCHHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESS---TTTTCCHHHHH
T ss_pred HHHhhccCCcHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEEC---CcccCCHHHHH
Confidence 5442100 00012245667899999999999999999999 999999 999999887 7
Q ss_pred HHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 197 VLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 197 ~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
.+.++++...+.|.|||++|||++.+..+||++++|+ .|+.
T Consensus 171 ~l~~~l~~l~~~g~tviivtHd~~~~~~~~d~v~~l~-~G~i 211 (249)
T 2qi9_C 171 ALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLK-GGKM 211 (249)
T ss_dssp HHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEE-TTEE
T ss_pred HHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEE-CCEE
Confidence 7888887765448899999999999999999999998 6653
No 24
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.97 E-value=3.8e-34 Score=253.10 Aligned_cols=169 Identities=14% Similarity=0.195 Sum_probs=128.9
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhh-----hhcccccccee
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSE-----EMDCQLGQEVG 140 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~v~ 140 (302)
+++++++.|++|++++|+||||||||||+++|+|+++|++|++.++|.+............+.+ ....++.+++.
T Consensus 22 vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~ 101 (266)
T 2yz2_A 22 ALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERVFDEVA 101 (266)
T ss_dssp EEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHHHHGGGEEEECSSGGGGCCCSSHHHHHH
T ss_pred eeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchHHhhhhEEEEeccchhhcCCCcHHHHHH
Confidence 4678899999999999999999999999999999999999999998865432100000011111 12335555554
Q ss_pred eeeee-----------------cCC---CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHH
Q psy2071 141 YSIRF-----------------EDC---SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLK 199 (302)
Q Consensus 141 ~~~~~-----------------~~~---~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~ 199 (302)
+.... ... ...++.+..|||||+||++||+||+.+|++||||| ||+++|+.. ..+.
T Consensus 102 ~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDE---Pts~LD~~~~~~l~ 178 (266)
T 2yz2_A 102 FAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDE---PLVGLDREGKTDLL 178 (266)
T ss_dssp HTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEES---TTTTCCHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEcC---ccccCCHHHHHHHH
Confidence 32110 011 11245667899999999999999999999999999 999999887 7788
Q ss_pred HHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 200 EVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 200 ~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
+++....+.|.|||++|||++.+..+||++++|+ .|+.
T Consensus 179 ~~l~~l~~~g~tii~vtHd~~~~~~~~d~v~~l~-~G~i 216 (266)
T 2yz2_A 179 RIVEKWKTLGKTVILISHDIETVINHVDRVVVLE-KGKK 216 (266)
T ss_dssp HHHHHHHHTTCEEEEECSCCTTTGGGCSEEEEEE-TTEE
T ss_pred HHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEE-CCEE
Confidence 8887764348899999999999999999999998 6654
No 25
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.97 E-value=3.2e-33 Score=244.46 Aligned_cols=167 Identities=14% Similarity=0.135 Sum_probs=126.1
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHH---Hhhhh---hccccccce
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQ---RVSEE---MDCQLGQEV 139 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~---~~~~~---~~~~~~~~v 139 (302)
+++++++.|++|++++|+||||||||||+++|+|+++|++|++.++|.+........... .+.+. +..++.+++
T Consensus 24 vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~enl 103 (247)
T 2ff7_A 24 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNI 103 (247)
T ss_dssp EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCTTSBHHHHH
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcEEEEeCCCccccccHHHHH
Confidence 467889999999999999999999999999999999999999999987643221111111 12221 123566666
Q ss_pred eeeeeecC------------C------------CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH
Q psy2071 140 GYSIRFED------------C------------SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM 195 (302)
Q Consensus 140 ~~~~~~~~------------~------------~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~ 195 (302)
.+...... . ...+.....|||||+||++|||||+.+|++||||| ||+++|+..
T Consensus 104 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~lllLDE---Pts~LD~~~ 180 (247)
T 2ff7_A 104 SLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDE---ATSALDYES 180 (247)
T ss_dssp TTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCSEEEECC---CCSCCCHHH
T ss_pred hccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC---CcccCCHHH
Confidence 54311000 0 00112346799999999999999999999999999 999999888
Q ss_pred -HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 196 -GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 196 -~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
..+.+++.... .+.|||++|||++.+. .||++++|+ .|+.
T Consensus 181 ~~~i~~~l~~~~-~g~tviivtH~~~~~~-~~d~v~~l~-~G~i 221 (247)
T 2ff7_A 181 EHVIMRNMHKIC-KGRTVIIIAHRLSTVK-NADRIIVME-KGKI 221 (247)
T ss_dssp HHHHHHHHHHHH-TTSEEEEECSSGGGGT-TSSEEEEEE-TTEE
T ss_pred HHHHHHHHHHHc-CCCEEEEEeCCHHHHH-hCCEEEEEE-CCEE
Confidence 77888887664 3789999999999885 599999998 6653
No 26
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.97 E-value=1.3e-33 Score=247.79 Aligned_cols=168 Identities=16% Similarity=0.113 Sum_probs=120.1
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEee------cCchhhhHHHHHHHhhhhh----c---
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVAC------TQPRRVAAMSVAQRVSEEM----D--- 132 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~------~~~~~~~~~~~~~~~~~~~----~--- 132 (302)
+++++++.|++|++++|+||||||||||+++|+|+++|++|++.+.. +++.-....++...+.... .
T Consensus 20 vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~ 99 (253)
T 2nq2_C 20 LFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFA 99 (253)
T ss_dssp EEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSCCCCSSCCBHHHHHHGGGGGGSCTTC
T ss_pred EEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEeccEEEEcCCCccCCCCCHHHHHHHhhhhhccccc
Confidence 46788999999999999999999999999999999999999886311 1110000011111111000 0
Q ss_pred ---cccccceeeeee-ecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcCC
Q psy2071 133 ---CQLGQEVGYSIR-FEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVIKQRAD 207 (302)
Q Consensus 133 ---~~~~~~v~~~~~-~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~ 207 (302)
....+.+...+. +......++.+..|||||+||++||+||+.+|++||||| ||+++|+.. ..+.+++....+
T Consensus 100 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDE---Pts~LD~~~~~~l~~~l~~l~~ 176 (253)
T 2nq2_C 100 KPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDE---PTSALDLANQDIVLSLLIDLAQ 176 (253)
T ss_dssp CCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESS---SSTTSCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeC---CcccCCHHHHHHHHHHHHHHHH
Confidence 000000110111 111112345678899999999999999999999999999 999999887 778888876644
Q ss_pred C-cEEEEEEecCHHHHHhhccCCCeeeecCc
Q psy2071 208 L-KLVIMSATLDAGKFQQYFDNAPLMNVPGR 237 (302)
Q Consensus 208 ~-~~~ii~~thd~~~~~~~~d~~~~l~i~g~ 237 (302)
. |.|||++|||++.+..+||++++|+ .|+
T Consensus 177 ~~g~tvi~vtHd~~~~~~~~d~v~~l~-~G~ 206 (253)
T 2nq2_C 177 SQNMTVVFTTHQPNQVVAIANKTLLLN-KQN 206 (253)
T ss_dssp TSCCEEEEEESCHHHHHHHCSEEEEEE-TTE
T ss_pred hcCCEEEEEecCHHHHHHhCCEEEEEe-CCe
Confidence 4 8899999999999999999999998 665
No 27
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.97 E-value=2.4e-34 Score=246.06 Aligned_cols=163 Identities=13% Similarity=0.120 Sum_probs=123.8
Q ss_pred HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCch----hhhHHHHHHHhhhhhcccccccee
Q psy2071 65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPR----RVAAMSVAQRVSEEMDCQLGQEVG 140 (302)
Q Consensus 65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~----~~~~~~~~~~~~~~~~~~~~~~v~ 140 (302)
.+++++++.|++|++++|+||||||||||+++|+|+++|++|++.++|.+.. .++.+ .+........++.+++.
T Consensus 23 ~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i~~v--~q~~~~~~~~tv~enl~ 100 (214)
T 1sgw_A 23 PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFL--PEEIIVPRKISVEDYLK 100 (214)
T ss_dssp EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEE--CSSCCCCTTSBHHHHHH
T ss_pred eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcEEEE--eCCCcCCCCCCHHHHHH
Confidence 4578889999999999999999999999999999999999999999886542 01110 11101111224444433
Q ss_pred eeee-----------------ecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHH
Q psy2071 141 YSIR-----------------FEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVI 202 (302)
Q Consensus 141 ~~~~-----------------~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll 202 (302)
+... +..... ++.+..||+||+||++||+||+.+|++||||| ||+++|+.. ..+.+++
T Consensus 101 ~~~~~~~~~~~~~~~~~~l~~~gl~~~-~~~~~~LSgGqkqrv~laraL~~~p~lllLDE---Pts~LD~~~~~~l~~~l 176 (214)
T 1sgw_A 101 AVASLYGVKVNKNEIMDALESVEVLDL-KKKLGELSQGTIRRVQLASTLLVNAEIYVLDD---PVVAIDEDSKHKVLKSI 176 (214)
T ss_dssp HHHHHTTCCCCHHHHHHHHHHTTCCCT-TSBGGGSCHHHHHHHHHHHHTTSCCSEEEEES---TTTTSCTTTHHHHHHHH
T ss_pred HHHHhcCCchHHHHHHHHHHHcCCCcC-CCChhhCCHHHHHHHHHHHHHHhCCCEEEEEC---CCcCCCHHHHHHHHHHH
Confidence 2210 111112 56678899999999999999999999999999 999999877 7777777
Q ss_pred HHcCCCcEEEEEEecCHHHHHhhccCCCeee
Q psy2071 203 KQRADLKLVIMSATLDAGKFQQYFDNAPLMN 233 (302)
Q Consensus 203 ~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~ 233 (302)
....+.+.||+++|||++++..+||+++++.
T Consensus 177 ~~~~~~g~tiiivtHd~~~~~~~~d~v~~~~ 207 (214)
T 1sgw_A 177 LEILKEKGIVIISSREELSYCDVNENLHKYS 207 (214)
T ss_dssp HHHHHHHSEEEEEESSCCTTSSEEEEGGGGB
T ss_pred HHHHhCCCEEEEEeCCHHHHHHhCCEEEEeC
Confidence 7655447899999999999999999998875
No 28
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.97 E-value=9.9e-34 Score=248.27 Aligned_cols=169 Identities=15% Similarity=0.113 Sum_probs=123.1
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhc--ccccCCCEEEeecCchhhhHHHHH----HHhhh----hhcccc
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVE--YSKSVGAKAVACTQPRRVAAMSVA----QRVSE----EMDCQL 135 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~--~~~~~G~~~i~~~~~~~~~~~~~~----~~~~~----~~~~~~ 135 (302)
+++++++.|++|++++|+||||||||||+++|+|+ ++|++|++.++|.+.......... ..+.+ ....++
T Consensus 18 vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv 97 (250)
T 2d2e_A 18 ILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKGLFLAFQYPVEVPGVTI 97 (250)
T ss_dssp EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTTBCCCCCCCC-CCSCBH
T ss_pred EEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCcEEEeccCCccccCCCH
Confidence 46788999999999999999999999999999998 789999999998754321111100 01111 112233
Q ss_pred ccceeeeee---------------------ecCC--CCccccccc-cCHHHHHHHhccccCCCCCcEEEEcCCCCCCcch
Q psy2071 136 GQEVGYSIR---------------------FEDC--SSPKTVLKY-MTDGMLLREGMSDPMLENYQVILLDEAHERTLAT 191 (302)
Q Consensus 136 ~~~v~~~~~---------------------~~~~--~~~~~~~~~-lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~l 191 (302)
.+++.+... .... ...++.+.. |||||+||++||+||+.+|++||||| ||+++
T Consensus 98 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDE---Pts~L 174 (250)
T 2d2e_A 98 ANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDE---TDSGL 174 (250)
T ss_dssp HHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHHHHCCSEEEEEC---GGGTT
T ss_pred HHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHcCCCEEEEeC---CCcCC
Confidence 344332110 0011 123455667 99999999999999999999999999 99999
Q ss_pred HHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhh-ccCCCeeeecCcC
Q psy2071 192 DILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQY-FDNAPLMNVPGRT 238 (302)
Q Consensus 192 D~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~-~d~~~~l~i~g~~ 238 (302)
|+.. ..+.+++....+.|.|||++|||++.+..+ ||++++|+ .|+.
T Consensus 175 D~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l~-~G~i 222 (250)
T 2d2e_A 175 DIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMM-DGRV 222 (250)
T ss_dssp CHHHHHHHHHHHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEEE-TTEE
T ss_pred CHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEEE-CCEE
Confidence 9887 778888887766689999999999999988 59999998 6653
No 29
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.97 E-value=1.7e-33 Score=252.81 Aligned_cols=167 Identities=17% Similarity=0.190 Sum_probs=128.1
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHH---hhh---hhccccccce
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQR---VSE---EMDCQLGQEV 139 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~---~~~---~~~~~~~~~v 139 (302)
+++++++.|++|++++|+||||||||||+++|+|++.|++|.|.++|.+............ +.+ .+..++.+|+
T Consensus 69 vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~eNi 148 (306)
T 3nh6_A 69 TLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNI 148 (306)
T ss_dssp EEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCSEEHHHHH
T ss_pred eeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCCccCcccHHHHH
Confidence 5789999999999999999999999999999999999999999999987654332222222 222 2234666666
Q ss_pred eeeeeecCC------------------------CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH
Q psy2071 140 GYSIRFEDC------------------------SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM 195 (302)
Q Consensus 140 ~~~~~~~~~------------------------~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~ 195 (302)
.+....... .........|||||+||++|||||+.+|++||||| ||+++|+..
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDE---Pts~LD~~~ 225 (306)
T 3nh6_A 149 RYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDE---ATSALDTSN 225 (306)
T ss_dssp HTTSTTCCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEEC---CSSCCCHHH
T ss_pred HhhcccCCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEEC---CcccCCHHH
Confidence 543211000 00112235699999999999999999999999999 999999887
Q ss_pred -HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 196 -GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 196 -~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
..+.+++..... +.|+|++||+++.+.. ||+|++|+ .|+.
T Consensus 226 ~~~i~~~l~~l~~-~~Tvi~itH~l~~~~~-aD~i~vl~-~G~i 266 (306)
T 3nh6_A 226 ERAIQASLAKVCA-NRTTIVVAHRLSTVVN-ADQILVIK-DGCI 266 (306)
T ss_dssp HHHHHHHHHHHHT-TSEEEEECCSHHHHHT-CSEEEEEE-TTEE
T ss_pred HHHHHHHHHHHcC-CCEEEEEEcChHHHHc-CCEEEEEE-CCEE
Confidence 677777776544 5688899999999976 99999998 6654
No 30
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.97 E-value=6.2e-33 Score=242.23 Aligned_cols=167 Identities=16% Similarity=0.159 Sum_probs=123.9
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHH---HHHHHhhh---hhccccccce
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAM---SVAQRVSE---EMDCQLGQEV 139 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~---~~~~~~~~---~~~~~~~~~v 139 (302)
+++++++.|++|++++|+||||||||||+++|+|+++|++|++.++|.+....... .....+.+ .+..++.+++
T Consensus 17 vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl 96 (243)
T 1mv5_A 17 ILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENL 96 (243)
T ss_dssp SEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCEECCSSCCCCEEHHHHT
T ss_pred eEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEEEcCCCccccccHHHHH
Confidence 46788999999999999999999999999999999999999999988654221100 00011111 1123555665
Q ss_pred eeeeeec-------------CC-CC-----------ccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHH
Q psy2071 140 GYSIRFE-------------DC-SS-----------PKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDIL 194 (302)
Q Consensus 140 ~~~~~~~-------------~~-~~-----------~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~ 194 (302)
.+..... .. .. .+.....|||||+||++|||||+.+|++||||| ||+++|+.
T Consensus 97 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~lllLDE---Pts~LD~~ 173 (243)
T 1mv5_A 97 TYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDE---ATASLDSE 173 (243)
T ss_dssp TSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEEC---CSCSSCSS
T ss_pred hhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCCEEEEEC---CcccCCHH
Confidence 5431000 00 00 012346899999999999999999999999999 99999987
Q ss_pred H-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 195 M-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 195 ~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
. ..+.+++.... .+.|+|++|||++.+. .||++++|+ .|+.
T Consensus 174 ~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~-~~d~v~~l~-~G~i 215 (243)
T 1mv5_A 174 SESMVQKALDSLM-KGRTTLVIAHRLSTIV-DADKIYFIE-KGQI 215 (243)
T ss_dssp SCCHHHHHHHHHH-TTSEEEEECCSHHHHH-HCSEEEEEE-TTEE
T ss_pred HHHHHHHHHHHhc-CCCEEEEEeCChHHHH-hCCEEEEEE-CCEE
Confidence 7 67777777655 4889999999999885 699999998 6653
No 31
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.97 E-value=1.6e-32 Score=241.89 Aligned_cols=160 Identities=15% Similarity=0.114 Sum_probs=124.1
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchh------hh-HHHHHHHhhhhhccccccc
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRR------VA-AMSVAQRVSEEMDCQLGQE 138 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~------~~-~~~~~~~~~~~~~~~~~~~ 138 (302)
+++++++.|+ |++++|+||||||||||+++|+|++ |++|++.+.|.+... ++ .+. +... . ..++.++
T Consensus 20 il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~~~~~~i~~~v~--Q~~~-l-~~tv~en 93 (263)
T 2pjz_A 20 SLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKIRNYIRYSTNLP--EAYE-I-GVTVNDI 93 (263)
T ss_dssp EEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGCSCCTTEEECCG--GGSC-T-TSBHHHH
T ss_pred eEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcchHHhhheEEEeC--CCCc-c-CCcHHHH
Confidence 4677899999 9999999999999999999999999 999999998865321 12 111 1111 1 3344444
Q ss_pred eeeeee---------------ecCC-CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHH
Q psy2071 139 VGYSIR---------------FEDC-SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEV 201 (302)
Q Consensus 139 v~~~~~---------------~~~~-~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~l 201 (302)
+.+... +... ...++.+..|||||+||++||+||+.+|++||||| ||+++|+.. ..+.++
T Consensus 94 l~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDE---Pts~LD~~~~~~l~~~ 170 (263)
T 2pjz_A 94 VYLYEELKGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDE---PFENVDAARRHVISRY 170 (263)
T ss_dssp HHHHHHHTCCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEEC---TTTTCCHHHHHHHHHH
T ss_pred HHHhhhhcchHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEEC---CccccCHHHHHHHHHH
Confidence 433211 1111 12356678899999999999999999999999999 999999887 778888
Q ss_pred HHHcCCCcEEEEEEecCHHHHHhhcc-CCCeeeecCcC
Q psy2071 202 IKQRADLKLVIMSATLDAGKFQQYFD-NAPLMNVPGRT 238 (302)
Q Consensus 202 l~~~~~~~~~ii~~thd~~~~~~~~d-~~~~l~i~g~~ 238 (302)
+....+ |+|++|||++.+..+|| ++++|+ .|+.
T Consensus 171 L~~~~~---tviivtHd~~~~~~~~d~~i~~l~-~G~i 204 (263)
T 2pjz_A 171 IKEYGK---EGILVTHELDMLNLYKEYKAYFLV-GNRL 204 (263)
T ss_dssp HHHSCS---EEEEEESCGGGGGGCTTSEEEEEE-TTEE
T ss_pred HHHhcC---cEEEEEcCHHHHHHhcCceEEEEE-CCEE
Confidence 887654 99999999999999999 999998 5653
No 32
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.97 E-value=6.6e-33 Score=245.20 Aligned_cols=170 Identities=14% Similarity=0.075 Sum_probs=125.0
Q ss_pred HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhc--ccccCCCEEEeecCchhhhHHHHH----HHhhhhh----ccc
Q psy2071 65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVE--YSKSVGAKAVACTQPRRVAAMSVA----QRVSEEM----DCQ 134 (302)
Q Consensus 65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~--~~~~~G~~~i~~~~~~~~~~~~~~----~~~~~~~----~~~ 134 (302)
.+++++++.|++|++++|+||||||||||+++|+|+ ++|++|++.+.|.+.......... ..+.+.. ..+
T Consensus 34 ~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~Q~~~l~~~~t 113 (267)
T 2zu0_C 34 AILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEGIFMAFQYPVEIPGVS 113 (267)
T ss_dssp EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHHTEEEECSSCCCCTTCB
T ss_pred EEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhCCEEEEccCcccccccc
Confidence 357889999999999999999999999999999998 478999999998754321110000 0111111 111
Q ss_pred cccceeee-------------------------eeecCC--CCcccccc-ccCHHHHHHHhccccCCCCCcEEEEcCCCC
Q psy2071 135 LGQEVGYS-------------------------IRFEDC--SSPKTVLK-YMTDGMLLREGMSDPMLENYQVILLDEAHE 186 (302)
Q Consensus 135 ~~~~v~~~-------------------------~~~~~~--~~~~~~~~-~lS~G~~qr~~la~al~~~p~lliLDE~~~ 186 (302)
+.+++.+. +..... ...++.+. .|||||+||++||+||+.+|++|||||
T Consensus 114 v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~iAraL~~~p~lLlLDE--- 190 (267)
T 2zu0_C 114 NQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDE--- 190 (267)
T ss_dssp HHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHHHHHHHHHCCSEEEEES---
T ss_pred HHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHhCCCEEEEeC---
Confidence 22221110 000111 12244555 599999999999999999999999999
Q ss_pred CCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhh-ccCCCeeeecCcC
Q psy2071 187 RTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQY-FDNAPLMNVPGRT 238 (302)
Q Consensus 187 p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~-~d~~~~l~i~g~~ 238 (302)
||+++|+.. ..+.++++...+.|.|||++|||++.+..+ ||++++|+ .|+.
T Consensus 191 Pts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l~-~G~i 243 (267)
T 2zu0_C 191 SDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLY-QGRI 243 (267)
T ss_dssp TTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCCSEEEEEE-TTEE
T ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEEE-CCEE
Confidence 999999887 788888887766689999999999999886 89999998 6653
No 33
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.96 E-value=5e-33 Score=241.89 Aligned_cols=160 Identities=16% Similarity=0.157 Sum_probs=117.5
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhhccccccceeeeee-
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIR- 144 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~- 144 (302)
+++++++.|++|++++|+||||||||||+++|+|+++|++|++.+.|. ++.+.+.. ..+..++.+++.+...
T Consensus 20 vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~----i~~v~Q~~---~~~~~tv~enl~~~~~~ 92 (237)
T 2cbz_A 20 TLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKGS----VAYVPQQA---WIQNDSLRENILFGCQL 92 (237)
T ss_dssp SEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECSC----EEEECSSC---CCCSEEHHHHHHTTSCC
T ss_pred eeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCE----EEEEcCCC---cCCCcCHHHHhhCcccc
Confidence 467889999999999999999999999999999999999999988762 11110000 0011122222221110
Q ss_pred -----------------ecCC-----CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHH
Q psy2071 145 -----------------FEDC-----SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEV 201 (302)
Q Consensus 145 -----------------~~~~-----~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~l 201 (302)
+... ...++....|||||+||++|||||+.+|++||||| ||+++|+.. ..+.++
T Consensus 93 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDE---Pts~LD~~~~~~i~~~ 169 (237)
T 2cbz_A 93 EEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDD---PLSAVDAHVGKHIFEN 169 (237)
T ss_dssp CTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEES---TTTTSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC---cccccCHHHHHHHHHH
Confidence 0000 01234567899999999999999999999999999 999999887 667777
Q ss_pred HH---HcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 202 IK---QRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 202 l~---~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
+. ... .+.|+|++|||++.+. +||++++|+ .|+.
T Consensus 170 l~~~~~~~-~~~tviivtH~~~~~~-~~d~v~~l~-~G~i 206 (237)
T 2cbz_A 170 VIGPKGML-KNKTRILVTHSMSYLP-QVDVIIVMS-GGKI 206 (237)
T ss_dssp TTSTTSTT-TTSEEEEECSCSTTGG-GSSEEEEEE-TTEE
T ss_pred HHHHHhhc-CCCEEEEEecChHHHH-hCCEEEEEe-CCEE
Confidence 63 222 3789999999999874 799999998 6653
No 34
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.96 E-value=1.5e-32 Score=242.07 Aligned_cols=166 Identities=14% Similarity=0.179 Sum_probs=123.8
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHH---Hhhhh---hccccccce
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQ---RVSEE---MDCQLGQEV 139 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~---~~~~~---~~~~~~~~v 139 (302)
+++++++.|++|++++|+||||||||||+++|+|+++| +|++.++|.+........... ++.+. +..++.+++
T Consensus 35 vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~enl 113 (260)
T 2ghi_A 35 TLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNI 113 (260)
T ss_dssp SEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTTEEEECSSCCCCSEEHHHHH
T ss_pred eeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhccEEEEcCCCcccccCHHHHH
Confidence 46788999999999999999999999999999999987 799999987653321111111 11111 123555555
Q ss_pred eeeeeec------------C-------CC-C----ccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH
Q psy2071 140 GYSIRFE------------D-------CS-S----PKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM 195 (302)
Q Consensus 140 ~~~~~~~------------~-------~~-~----~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~ 195 (302)
.+..... . .. . .+.....|||||+||++|||||+.+|++||||| ||+++|+..
T Consensus 114 ~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDE---Pts~LD~~~ 190 (260)
T 2ghi_A 114 LYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDE---ATSSLDSKT 190 (260)
T ss_dssp HTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCCSEEEEEC---CCCTTCHHH
T ss_pred hccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCCCEEEEEC---ccccCCHHH
Confidence 4321000 0 00 0 012346799999999999999999999999999 999999888
Q ss_pred -HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 196 -GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 196 -~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
..+.+++....+ +.|+|++|||++.+. .||++++|+ .|+.
T Consensus 191 ~~~i~~~l~~l~~-~~tviivtH~~~~~~-~~d~i~~l~-~G~i 231 (260)
T 2ghi_A 191 EYLFQKAVEDLRK-NRTLIIIAHRLSTIS-SAESIILLN-KGKI 231 (260)
T ss_dssp HHHHHHHHHHHTT-TSEEEEECSSGGGST-TCSEEEEEE-TTEE
T ss_pred HHHHHHHHHHhcC-CCEEEEEcCCHHHHH-hCCEEEEEE-CCEE
Confidence 778888887655 789999999999885 599999998 6653
No 35
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.96 E-value=1.9e-32 Score=237.11 Aligned_cols=160 Identities=14% Similarity=0.140 Sum_probs=115.5
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhhccccccceeeeee-
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIR- 144 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~- 144 (302)
+++++++.|++|++++|+||||||||||+++|+|+++|++|++.+.|. ++.+.+... .+..++.+++.+...
T Consensus 23 il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~----i~~v~q~~~---~~~~tv~enl~~~~~~ 95 (229)
T 2pze_A 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR----ISFCSQFSW---IMPGTIKENIIFGVSY 95 (229)
T ss_dssp SEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECSC----EEEECSSCC---CCSBCHHHHHHTTSCC
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECCE----EEEEecCCc---ccCCCHHHHhhccCCc
Confidence 467889999999999999999999999999999999999999988762 110000000 000122222211100
Q ss_pred -----------------ecCCC-----CccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHH
Q psy2071 145 -----------------FEDCS-----SPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEV 201 (302)
Q Consensus 145 -----------------~~~~~-----~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~l 201 (302)
..... ........|||||+||++|||||+.+|++||||| ||+++|+.. ..+.++
T Consensus 96 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lllLDE---Pts~LD~~~~~~i~~~ 172 (229)
T 2pze_A 96 DEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDS---PFGYLDVLTEKEIFES 172 (229)
T ss_dssp CHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEES---TTTTSCHHHHHHHHHH
T ss_pred ChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEEC---cccCCCHHHHHHHHHH
Confidence 00000 1122346899999999999999999999999999 999999887 667665
Q ss_pred -HHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 202 -IKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 202 -l~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
+....+ +.|+|++|||++.+. .||++++|+ .|+.
T Consensus 173 l~~~~~~-~~tvi~vtH~~~~~~-~~d~v~~l~-~G~i 207 (229)
T 2pze_A 173 CVCKLMA-NKTRILVTSKMEHLK-KADKILILH-EGSS 207 (229)
T ss_dssp CCCCCTT-TSEEEEECCCHHHHH-HCSEEEEEE-TTEE
T ss_pred HHHHhhC-CCEEEEEcCChHHHH-hCCEEEEEE-CCEE
Confidence 344433 789999999999886 599999998 6653
No 36
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.96 E-value=2.5e-32 Score=252.60 Aligned_cols=176 Identities=13% Similarity=0.178 Sum_probs=127.9
Q ss_pred HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHH---Hhhh---hhccccccc
Q psy2071 65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQ---RVSE---EMDCQLGQE 138 (302)
Q Consensus 65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~---~~~~---~~~~~~~~~ 138 (302)
.+++++++.|++||+++|+||||||||||+++|+|+++ ++|+|.++|.+........... .+++ .+..++.++
T Consensus 35 ~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~rr~ig~v~Q~~~lf~~tv~en 113 (390)
T 3gd7_A 35 AILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKN 113 (390)
T ss_dssp CSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHHHHTEEEESCCCCCCSEEHHHH
T ss_pred EEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHHhCCEEEEcCCcccCccCHHHH
Confidence 35788999999999999999999999999999999998 8999999997654322211111 1222 122355566
Q ss_pred eeeeeeec-----------CC-CCccccccc-----------cCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH
Q psy2071 139 VGYSIRFE-----------DC-SSPKTVLKY-----------MTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM 195 (302)
Q Consensus 139 v~~~~~~~-----------~~-~~~~~~~~~-----------lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~ 195 (302)
+.+..... .. ...++.... |||||+||++|||||+.+|++||||| |++++|+..
T Consensus 114 l~~~~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~lLLLDE---Pts~LD~~~ 190 (390)
T 3gd7_A 114 LDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDE---PSAHLDPVT 190 (390)
T ss_dssp HCTTCCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCCEEEEES---HHHHSCHHH
T ss_pred hhhccccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCCEEEEeC---CccCCCHHH
Confidence 54211100 00 011222333 99999999999999999999999999 999999887
Q ss_pred -HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCc----CCccceeecC
Q psy2071 196 -GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGR----THPVEIFYTP 247 (302)
Q Consensus 196 -~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~----~~~~~~~~~~ 247 (302)
..+.+++++.. .+.|+|++|||++.+ .+||++++|+ .|+ +.|.+++..|
T Consensus 191 ~~~l~~~l~~~~-~~~tvi~vtHd~e~~-~~aDri~vl~-~G~i~~~g~~~el~~~p 244 (390)
T 3gd7_A 191 YQIIRRTLKQAF-ADCTVILCEARIEAM-LECDQFLVIE-ENKVRQYDSILELYHYP 244 (390)
T ss_dssp HHHHHHHHHTTT-TTSCEEEECSSSGGG-TTCSEEEEEE-TTEEEEESSHHHHHHCC
T ss_pred HHHHHHHHHHHh-CCCEEEEEEcCHHHH-HhCCEEEEEE-CCEEEEECCHHHHHhCC
Confidence 67778877654 378999999998655 5699999998 554 3565655544
No 37
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.95 E-value=6.1e-30 Score=249.54 Aligned_cols=168 Identities=16% Similarity=0.213 Sum_probs=128.9
Q ss_pred HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHH---Hhhh---hhccccccc
Q psy2071 65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQ---RVSE---EMDCQLGQE 138 (302)
Q Consensus 65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~---~~~~---~~~~~~~~~ 138 (302)
.+++++++.+++|++++|+||||||||||+++++|+++|++|++.++|.+........... .+.+ .+..++.+|
T Consensus 357 ~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~en 436 (582)
T 3b5x_A 357 PALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANN 436 (582)
T ss_pred cccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcCeEEEcCCCccccccHHHH
Confidence 4689999999999999999999999999999999999999999999997654322211111 1111 123466677
Q ss_pred eeeee-eecCCC------------------------CccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHH
Q psy2071 139 VGYSI-RFEDCS------------------------SPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDI 193 (302)
Q Consensus 139 v~~~~-~~~~~~------------------------~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~ 193 (302)
+.+.. ...... ........||||||||++|||||+.+|++||||| ||+++|+
T Consensus 437 i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~~p~illlDE---pts~LD~ 513 (582)
T 3b5x_A 437 IAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDE---ATSALDT 513 (582)
T ss_pred HhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHcCCCEEEEEC---ccccCCH
Confidence 66542 100000 0011235799999999999999999999999999 9999998
Q ss_pred HH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 194 LM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 194 ~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
.. ..+.+.+....+ +.|++++||+++.+. .||++++|+ .|+.
T Consensus 514 ~~~~~i~~~l~~~~~-~~tvi~itH~~~~~~-~~d~i~~l~-~G~i 556 (582)
T 3b5x_A 514 ESERAIQAALDELQK-NKTVLVIAHRLSTIE-QADEILVVD-EGEI 556 (582)
T ss_pred HHHHHHHHHHHHHcC-CCEEEEEecCHHHHH-hCCEEEEEE-CCEE
Confidence 88 778888877654 789999999999886 799999998 6653
No 38
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.95 E-value=3e-30 Score=252.28 Aligned_cols=167 Identities=17% Similarity=0.175 Sum_probs=128.6
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHh---hh---hhccccccce
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRV---SE---EMDCQLGQEV 139 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~---~~---~~~~~~~~~v 139 (302)
+++++++.+++|++++|+||||||||||+++++|+++|++|++.++|.+............+ .+ .+..++.+|+
T Consensus 370 ~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni 449 (598)
T 3qf4_B 370 VLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENL 449 (598)
T ss_dssp SCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECTTCCCCSSBHHHHH
T ss_pred cccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhceEEEeCCCccccccHHHHH
Confidence 57889999999999999999999999999999999999999999999876554333222222 22 2234666776
Q ss_pred eeeeeecCCC--------------------Cccc----cccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH
Q psy2071 140 GYSIRFEDCS--------------------SPKT----VLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM 195 (302)
Q Consensus 140 ~~~~~~~~~~--------------------~~~~----~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~ 195 (302)
.+........ ..++ ....||||||||++|||||+.+|++||||| ||+++|+..
T Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p~illlDE---pts~LD~~~ 526 (598)
T 3qf4_B 450 KYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDE---ATSNVDTKT 526 (598)
T ss_dssp HSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTCCSEEEECC---CCTTCCHHH
T ss_pred hcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEEC---CccCCCHHH
Confidence 5532100000 0011 124699999999999999999999999999 999999887
Q ss_pred -HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 196 -GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 196 -~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
..+.+.+....+ +.|++++||+++.+.. ||++++|+ .|+.
T Consensus 527 ~~~i~~~l~~~~~-~~t~i~itH~l~~~~~-~d~i~~l~-~G~i 567 (598)
T 3qf4_B 527 EKSIQAAMWKLME-GKTSIIIAHRLNTIKN-ADLIIVLR-DGEI 567 (598)
T ss_dssp HHHHHHHHHHHHT-TSEEEEESCCTTHHHH-CSEEEEEC-SSSE
T ss_pred HHHHHHHHHHHcC-CCEEEEEecCHHHHHc-CCEEEEEE-CCEE
Confidence 677777776543 7899999999998865 99999998 6653
No 39
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.95 E-value=1.1e-30 Score=233.14 Aligned_cols=160 Identities=14% Similarity=0.119 Sum_probs=113.4
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhhcccccccee-----
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVG----- 140 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~----- 140 (302)
+++++++.|++|++++|+||||||||||+++|+|+++|++|++.++|. ++.+.+... .+..++.+++.
T Consensus 53 vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~----i~~v~Q~~~---l~~~tv~enl~~~~~~ 125 (290)
T 2bbs_A 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR----ISFCSQNSW---IMPGTIKENIIGVSYD 125 (290)
T ss_dssp SEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCSC----EEEECSSCC---CCSSBHHHHHHTTCCC
T ss_pred EEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCE----EEEEeCCCc---cCcccHHHHhhCcccc
Confidence 478889999999999999999999999999999999999999988652 100000000 00011111111
Q ss_pred ------------eeeeecCCC-----CccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHH-
Q psy2071 141 ------------YSIRFEDCS-----SPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEV- 201 (302)
Q Consensus 141 ------------~~~~~~~~~-----~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~l- 201 (302)
..-...... ........|||||+||++|||||+.+|++||||| |++++|+.. ..+.++
T Consensus 126 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDE---Pts~LD~~~~~~i~~~l 202 (290)
T 2bbs_A 126 EYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDS---PFGYLDVLTEKEIFESC 202 (290)
T ss_dssp HHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEEEES---TTTTCCHHHHHHHHHHC
T ss_pred hHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEEEEC---CcccCCHHHHHHHHHHH
Confidence 000000000 0112346899999999999999999999999999 999999887 667665
Q ss_pred HHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 202 IKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 202 l~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
+.... .+.|||++|||++.+. +||++++|+ .|+.
T Consensus 203 l~~~~-~~~tviivtHd~~~~~-~~d~i~~l~-~G~i 236 (290)
T 2bbs_A 203 VCKLM-ANKTRILVTSKMEHLK-KADKILILH-EGSS 236 (290)
T ss_dssp CCCCT-TTSEEEEECCCHHHHH-HSSEEEEEE-TTEE
T ss_pred HHHhh-CCCEEEEEecCHHHHH-cCCEEEEEE-CCeE
Confidence 33333 3789999999999885 699999998 6653
No 40
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.95 E-value=3.9e-30 Score=250.90 Aligned_cols=167 Identities=14% Similarity=0.154 Sum_probs=129.9
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHh---hh---hhccccccce
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRV---SE---EMDCQLGQEV 139 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~---~~---~~~~~~~~~v 139 (302)
+++++++.|++||+++|+||||||||||+++++|+++|++|++.++|.+...........++ .+ .+..++.+|+
T Consensus 358 ~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni 437 (587)
T 3qf4_A 358 VLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSGTIKENL 437 (587)
T ss_dssp SEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHHEEEECSSCCCCSEEHHHHH
T ss_pred ceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhheEEECCCCcCcCccHHHHH
Confidence 57889999999999999999999999999999999999999999999887654433333322 22 1233566666
Q ss_pred eeeeeecC-------------------C-----CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH
Q psy2071 140 GYSIRFED-------------------C-----SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM 195 (302)
Q Consensus 140 ~~~~~~~~-------------------~-----~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~ 195 (302)
.+...... . .........||||||||++|||||+.+|++||||| ||+++|+..
T Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~~p~illlDE---pts~LD~~~ 514 (587)
T 3qf4_A 438 KWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDD---CTSSVDPIT 514 (587)
T ss_dssp TTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHTCCSEEEEES---CCTTSCHHH
T ss_pred hccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHcCCCEEEEEC---CcccCCHHH
Confidence 54321100 0 00122335699999999999999999999999999 999999888
Q ss_pred -HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 196 -GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 196 -~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
..+.+.++...+ +.|++++||+++.+. .||++++|+ .|+.
T Consensus 515 ~~~i~~~l~~~~~-~~tvi~itH~l~~~~-~~d~i~vl~-~G~i 555 (587)
T 3qf4_A 515 EKRILDGLKRYTK-GCTTFIITQKIPTAL-LADKILVLH-EGKV 555 (587)
T ss_dssp HHHHHHHHHHHST-TCEEEEEESCHHHHT-TSSEEEEEE-TTEE
T ss_pred HHHHHHHHHHhCC-CCEEEEEecChHHHH-hCCEEEEEE-CCEE
Confidence 677777776543 789999999999875 899999998 6653
No 41
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.95 E-value=1.2e-29 Score=244.26 Aligned_cols=160 Identities=14% Similarity=0.081 Sum_probs=114.5
Q ss_pred HHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhh-------HHHHHHHhhhhhccc---ccccee
Q psy2071 71 MTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVA-------AMSVAQRVSEEMDCQ---LGQEVG 140 (302)
Q Consensus 71 ~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~-------~~~~~~~~~~~~~~~---~~~~v~ 140 (302)
++.|++||+++|+||||||||||+++|+|+++|++|++.+.+....... ...+.+.+....... ....+.
T Consensus 288 ~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~ 367 (538)
T 3ozx_A 288 NGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIFPNYDGTVQQYLENASKDALSTSSWFFE 367 (538)
T ss_dssp CEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCCCEEEECSSCCCCCSSBHHHHHHHHCSSTTCTTSHHHH
T ss_pred cceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCeeeEeechhcccccCCCHHHHHHHhhhhccchhHHHHH
Confidence 3457899999999999999999999999999999999976553311000 001111111000000 000000
Q ss_pred eee-eecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcC-CCcEEEEEEec
Q psy2071 141 YSI-RFEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVIKQRA-DLKLVIMSATL 217 (302)
Q Consensus 141 ~~~-~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~-~~~~~ii~~th 217 (302)
..+ .+......++.+..|||||+||++||+||+.+|++||||| ||+++|+.. ..+.+++++.. +.+.|||++||
T Consensus 368 ~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDE---PT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsH 444 (538)
T 3ozx_A 368 EVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQ---PSSYLDVEERYIVAKAIKRVTRERKAVTFIIDH 444 (538)
T ss_dssp HTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEES---TTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECS
T ss_pred HHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeC---CccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeC
Confidence 000 0111123456788999999999999999999999999999 999999887 67777777653 45889999999
Q ss_pred CHHHHHhhccCCCeee
Q psy2071 218 DAGKFQQYFDNAPLMN 233 (302)
Q Consensus 218 d~~~~~~~~d~~~~l~ 233 (302)
|++++..+||++++|+
T Consensus 445 dl~~~~~~aDri~vl~ 460 (538)
T 3ozx_A 445 DLSIHDYIADRIIVFK 460 (538)
T ss_dssp CHHHHHHHCSEEEEEE
T ss_pred CHHHHHHhCCEEEEEe
Confidence 9999999999999998
No 42
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.95 E-value=4.5e-30 Score=250.16 Aligned_cols=167 Identities=14% Similarity=0.170 Sum_probs=128.5
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHh---hh---hhccccccce
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRV---SE---EMDCQLGQEV 139 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~---~~---~~~~~~~~~v 139 (302)
+++++++.+++|++++|+||||||||||+++++|+++|++|++.++|.+............+ .+ .+..++.+|+
T Consensus 356 ~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni 435 (578)
T 4a82_A 356 ILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENI 435 (578)
T ss_dssp SEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSSBHHHHH
T ss_pred ceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhheEEEeCCCccCcccHHHHH
Confidence 57889999999999999999999999999999999999999999999876544332222222 22 2234666776
Q ss_pred eeeeeecC-------------------CC-Ccc----ccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH
Q psy2071 140 GYSIRFED-------------------CS-SPK----TVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM 195 (302)
Q Consensus 140 ~~~~~~~~-------------------~~-~~~----~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~ 195 (302)
.+...... .. ..+ .....||||||||++|||||+.+|++||||| ||+++|+..
T Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~~p~illlDE---pts~LD~~~ 512 (578)
T 4a82_A 436 LLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDE---ATSALDLES 512 (578)
T ss_dssp GGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSEEEEES---TTTTCCHHH
T ss_pred hcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHcCCCEEEEEC---ccccCCHHH
Confidence 55321100 00 011 2234699999999999999999999999999 999999887
Q ss_pred -HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 196 -GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 196 -~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
..+.+.++...+ +.|++++||+++.+. .||++++|+ .|+.
T Consensus 513 ~~~i~~~l~~~~~-~~t~i~itH~l~~~~-~~d~i~~l~-~G~i 553 (578)
T 4a82_A 513 ESIIQEALDVLSK-DRTTLIVAHRLSTIT-HADKIVVIE-NGHI 553 (578)
T ss_dssp HHHHHHHHHHHTT-TSEEEEECSSGGGTT-TCSEEEEEE-TTEE
T ss_pred HHHHHHHHHHHcC-CCEEEEEecCHHHHH-cCCEEEEEE-CCEE
Confidence 677888776544 578889999999985 599999998 6653
No 43
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.95 E-value=1.3e-29 Score=247.85 Aligned_cols=167 Identities=19% Similarity=0.318 Sum_probs=127.9
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHH---Hhhh---hhccccccce
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQ---RVSE---EMDCQLGQEV 139 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~---~~~~---~~~~~~~~~v 139 (302)
+++++++.+++|++++|+||||||||||+++|+|+++|++|++.++|.+........... .+.+ .+..++.+|+
T Consensus 359 vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni 438 (595)
T 2yl4_A 359 IFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENI 438 (595)
T ss_dssp EEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTEETTTBCHHHHHHSEEEECSSCCCCSSBHHHHH
T ss_pred cccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCEEhhhCCHHHHHhceEEEccCCcccCCCHHHHH
Confidence 578999999999999999999999999999999999999999999997654332222211 1222 1234666666
Q ss_pred eeeeeec-CCC----------------------Cccccc----cccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchH
Q psy2071 140 GYSIRFE-DCS----------------------SPKTVL----KYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATD 192 (302)
Q Consensus 140 ~~~~~~~-~~~----------------------~~~~~~----~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD 192 (302)
.+..... ... ..++.+ ..||||||||++|||||+.+|++||||| ||+++|
T Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iAral~~~p~illlDE---pts~LD 515 (595)
T 2yl4_A 439 AYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDE---ATSALD 515 (595)
T ss_dssp HTTSSSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHHHHHHHCCSEEEEEC---CCSSCC
T ss_pred hhcCCCccccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHHcCCCEEEEEC---cccCCC
Confidence 5432110 000 012222 6799999999999999999999999999 999999
Q ss_pred HHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 193 ILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 193 ~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
+.. ..+.+.+....+ +.|++++||+++.+. .||++++|+ .|+.
T Consensus 516 ~~~~~~i~~~l~~~~~-~~tvi~itH~~~~~~-~~d~i~~l~-~G~i 559 (595)
T 2yl4_A 516 AENEYLVQEALDRLMD-GRTVLVIAHRLSTIK-NANMVAVLD-QGKI 559 (595)
T ss_dssp HHHHHHHHHHHHHHHT-TSEEEEECCCHHHHH-HSSEEEEEE-TTEE
T ss_pred HHHHHHHHHHHHHHhc-CCEEEEEecCHHHHH-cCCEEEEEE-CCEE
Confidence 888 778888876655 679999999999886 599999998 6653
No 44
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.94 E-value=5.4e-30 Score=249.91 Aligned_cols=168 Identities=15% Similarity=0.173 Sum_probs=127.8
Q ss_pred HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHH---Hhhhh---hccccccc
Q psy2071 65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQ---RVSEE---MDCQLGQE 138 (302)
Q Consensus 65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~---~~~~~---~~~~~~~~ 138 (302)
.+++++++.+++|++++|+||||||||||+++++|+++|++|++.++|.+........... .+.+. +..++.+|
T Consensus 357 ~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~en 436 (582)
T 3b60_A 357 PALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANN 436 (582)
T ss_dssp CSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTEEEECSSCCCCSSBHHHH
T ss_pred ccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhhCeEEccCCcCCCCCHHHH
Confidence 3578899999999999999999999999999999999999999999997654332222222 12221 23366666
Q ss_pred eeeee-eecCC----------C--------------CccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHH
Q psy2071 139 VGYSI-RFEDC----------S--------------SPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDI 193 (302)
Q Consensus 139 v~~~~-~~~~~----------~--------------~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~ 193 (302)
+.+.. ..... . ........||||||||++|||||+.+|++||||| ||+++|+
T Consensus 437 i~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~~p~illlDE---pts~LD~ 513 (582)
T 3b60_A 437 IAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDE---ATSALDT 513 (582)
T ss_dssp HHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSEEEEET---TTSSCCH
T ss_pred HhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEC---ccccCCH
Confidence 65532 00000 0 0011235799999999999999999999999999 9999998
Q ss_pred HH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 194 LM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 194 ~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
.. ..+.+.+....+ +.|++++||+++.+. .||++++|+ .|+.
T Consensus 514 ~~~~~i~~~l~~~~~-~~tvi~itH~~~~~~-~~d~i~~l~-~G~i 556 (582)
T 3b60_A 514 ESERAIQAALDELQK-NRTSLVIAHRLSTIE-QADEIVVVE-DGII 556 (582)
T ss_dssp HHHHHHHHHHHHHHT-TSEEEEECSCGGGTT-TCSEEEEEE-TTEE
T ss_pred HHHHHHHHHHHHHhC-CCEEEEEeccHHHHH-hCCEEEEEE-CCEE
Confidence 88 678888876654 789999999999875 799999998 6653
No 45
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.94 E-value=1.3e-28 Score=237.43 Aligned_cols=164 Identities=13% Similarity=0.115 Sum_probs=115.4
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCE---------EEeecCchhhhHHHH---------HHHh
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAK---------AVACTQPRRVAAMSV---------AQRV 127 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~---------~i~~~~~~~~~~~~~---------~~~~ 127 (302)
++++++ .|++||+++|+||||||||||+++|+|+++|++|.+ .+.|........... .+.+
T Consensus 37 ~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~q~~ 115 (538)
T 1yqt_A 37 VLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVKPQYV 115 (538)
T ss_dssp EEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHHHHHHTTSCCCEEECSCG
T ss_pred cccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHHHHHHHHhhhhhhhhhhh
Confidence 356777 899999999999999999999999999999999984 122222110000000 0000
Q ss_pred hhhhc---cccccceee---------ee-eecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHH
Q psy2071 128 SEEMD---CQLGQEVGY---------SI-RFEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDIL 194 (302)
Q Consensus 128 ~~~~~---~~~~~~v~~---------~~-~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~ 194 (302)
..... .++.+++.. .+ .+......++.+..|||||+||++||+||+.+|++||||| ||++||+.
T Consensus 116 ~~~~~~~~~~v~e~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LSgGekQRv~iAraL~~~P~lLlLDE---PTs~LD~~ 192 (538)
T 1yqt_A 116 DLIPKAVKGKVIELLKKADETGKLEEVVKALELENVLEREIQHLSGGELQRVAIAAALLRNATFYFFDE---PSSYLDIR 192 (538)
T ss_dssp GGSGGGCCSBHHHHHHHHCSSSCHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEES---TTTTCCHH
T ss_pred hhcchhhhccHHHHHhhhhHHHHHHHHHHHcCCChhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEEC---CcccCCHH
Confidence 00000 011111100 00 0111123456778899999999999999999999999999 99999987
Q ss_pred H-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeee
Q psy2071 195 M-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMN 233 (302)
Q Consensus 195 ~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~ 233 (302)
. ..+.++++.+.+.|.|||++|||++++..+||++++|+
T Consensus 193 ~~~~l~~~L~~l~~~g~tvi~vsHd~~~~~~~~dri~vl~ 232 (538)
T 1yqt_A 193 QRLNAARAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVVY 232 (538)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEE
T ss_pred HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEc
Confidence 7 67777777655458999999999999999999999997
No 46
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.94 E-value=2.6e-28 Score=237.55 Aligned_cols=158 Identities=15% Similarity=0.148 Sum_probs=111.9
Q ss_pred HHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEE-----------eecCchhhhHHHHHHHhh-----hhhc----
Q psy2071 73 LLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAV-----------ACTQPRRVAAMSVAQRVS-----EEMD---- 132 (302)
Q Consensus 73 ~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i-----------~~~~~~~~~~~~~~~~~~-----~~~~---- 132 (302)
.+++|++++|+||||||||||+++|+|+++|++|.+.. .|..............+. +...
T Consensus 99 ~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (608)
T 3j16_B 99 TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPR 178 (608)
T ss_dssp CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECCCTTTHHH
T ss_pred CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhhhhHHHHHhhhhhhchhhhhhhhh
Confidence 57899999999999999999999999999999998721 111110000000000000 0000
Q ss_pred ------cccccc-----------eeeee-eecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHH
Q psy2071 133 ------CQLGQE-----------VGYSI-RFEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDIL 194 (302)
Q Consensus 133 ------~~~~~~-----------v~~~~-~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~ 194 (302)
.++.+. +...+ .+......++.+..|||||+||++||+||+.+|++||||| ||++||+.
T Consensus 179 ~~~~~~~~v~~~l~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv~iAraL~~~p~llllDE---Pts~LD~~ 255 (608)
T 3j16_B 179 AIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDE---PSSYLDVK 255 (608)
T ss_dssp HCSSSSSHHHHHHHHHCCSCHHHHHHHHHHHTCTGGGGSCTTTCCHHHHHHHHHHHHHHSCCSEEEEEC---TTTTCCHH
T ss_pred hhcchhhHHHHHHhhhhhhHHHHHHHHHHHcCCcchhCCChHHCCHHHHHHHHHHHHHHhCCCEEEEEC---cccCCCHH
Confidence 000000 00000 0111123456678899999999999999999999999999 99999988
Q ss_pred H-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeee
Q psy2071 195 M-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMN 233 (302)
Q Consensus 195 ~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~ 233 (302)
. ..+.++++.+.+.|.|||++|||++++..+||++.+|+
T Consensus 256 ~~~~l~~~l~~l~~~g~tvi~vtHdl~~~~~~~drv~vl~ 295 (608)
T 3j16_B 256 QRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIY 295 (608)
T ss_dssp HHHHHHHHHHGGGTTTCEEEEECSCHHHHHHHCSEEEEEE
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEe
Confidence 7 77888888877778999999999999999999999996
No 47
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.94 E-value=2.6e-28 Score=234.92 Aligned_cols=156 Identities=13% Similarity=0.092 Sum_probs=110.5
Q ss_pred HHhCCEEEEEccCCCCccchhhhhhhcccccCCCE-----------EEeecCchhhhHHHHH---------HHhhhh---
Q psy2071 74 LAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAK-----------AVACTQPRRVAAMSVA---------QRVSEE--- 130 (302)
Q Consensus 74 i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~-----------~i~~~~~~~~~~~~~~---------~~~~~~--- 130 (302)
+++|++++|+||||||||||+++|+|++.|++|.+ .+.|............ +.+...
T Consensus 22 ~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (538)
T 3ozx_A 22 PKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYASKF 101 (538)
T ss_dssp CCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEECSCTTGGGTT
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhccchhhhhhhh
Confidence 47999999999999999999999999999999987 2222221110000000 000000
Q ss_pred hcccccccee---------eee-eecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHH
Q psy2071 131 MDCQLGQEVG---------YSI-RFEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLK 199 (302)
Q Consensus 131 ~~~~~~~~v~---------~~~-~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~ 199 (302)
...++.+.+. ..+ .+......++.+..|||||+||++||+||+.+|++||||| ||++||+.. ..+.
T Consensus 102 ~~~~v~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~iA~aL~~~p~illlDE---Pts~LD~~~~~~l~ 178 (538)
T 3ozx_A 102 LKGTVNEILTKIDERGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQ---PSSYLDVRERMNMA 178 (538)
T ss_dssp CCSBHHHHHHHHCCSSCHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEES---TTTTCCHHHHHHHH
T ss_pred ccCcHHHHhhcchhHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEEC---CcccCCHHHHHHHH
Confidence 0000000000 000 0011112356778899999999999999999999999999 999999877 7788
Q ss_pred HHHHHcCCCcEEEEEEecCHHHHHhhccCCCeee
Q psy2071 200 EVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMN 233 (302)
Q Consensus 200 ~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~ 233 (302)
++++.+.+ +.|||++|||++++..+||++.+|+
T Consensus 179 ~~l~~l~~-g~tii~vsHdl~~~~~~~d~i~vl~ 211 (538)
T 3ozx_A 179 KAIRELLK-NKYVIVVDHDLIVLDYLTDLIHIIY 211 (538)
T ss_dssp HHHHHHCT-TSEEEEECSCHHHHHHHCSEEEEEE
T ss_pred HHHHHHhC-CCEEEEEEeChHHHHhhCCEEEEec
Confidence 88887766 8999999999999999999999997
No 48
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.94 E-value=1.6e-28 Score=239.31 Aligned_cols=164 Identities=15% Similarity=0.140 Sum_probs=116.2
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCE---------EEeecCchhhhHHHH---------HHHh
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAK---------AVACTQPRRVAAMSV---------AQRV 127 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~---------~i~~~~~~~~~~~~~---------~~~~ 127 (302)
++++++ .|++|++++|+||||||||||+++|+|+++|++|.+ .+.|........... .+.+
T Consensus 107 ~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~q~~ 185 (607)
T 3bk7_A 107 VLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQYV 185 (607)
T ss_dssp EEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECSCG
T ss_pred eeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCCEehhhhhhhhhhhhcceEEeechh
Confidence 456777 899999999999999999999999999999999984 122322111000000 0000
Q ss_pred hhhh---ccccccceee---------ee-eecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHH
Q psy2071 128 SEEM---DCQLGQEVGY---------SI-RFEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDIL 194 (302)
Q Consensus 128 ~~~~---~~~~~~~v~~---------~~-~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~ 194 (302)
.... ..++.+++.. .+ .+......++.+..|||||+||++||+||+.+|++||||| ||++||+.
T Consensus 186 ~~~~~~~~~tv~e~l~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSGGekQRvaIAraL~~~P~lLlLDE---PTs~LD~~ 262 (607)
T 3bk7_A 186 DLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDE---PSSYLDIR 262 (607)
T ss_dssp GGGGGTCCSBHHHHHHHTCCSSCHHHHHHHTTCTTGGGSBGGGCCHHHHHHHHHHHHHHSCCSEEEEEC---TTTTCCHH
T ss_pred hhchhhccccHHHHhhhhHHHHHHHHHHHHcCCCchhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEEC---CcccCCHH
Confidence 0000 0011111110 00 0111123456778899999999999999999999999999 99999988
Q ss_pred H-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeee
Q psy2071 195 M-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMN 233 (302)
Q Consensus 195 ~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~ 233 (302)
. ..+.++++.+.+.|.|||++|||++++..+||++.+|+
T Consensus 263 ~~~~l~~~L~~l~~~g~tvIivsHdl~~~~~~adri~vl~ 302 (607)
T 3bk7_A 263 QRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVY 302 (607)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEE
T ss_pred HHHHHHHHHHHHHhcCCEEEEEecChHHHHhhCCEEEEEC
Confidence 7 67777777654458999999999999999999999997
No 49
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.94 E-value=1.3e-28 Score=237.48 Aligned_cols=159 Identities=13% Similarity=0.105 Sum_probs=113.0
Q ss_pred HHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEe------ecCch---hhhHHHHHHHh-hhhhccccccce
Q psy2071 70 FMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVA------CTQPR---RVAAMSVAQRV-SEEMDCQLGQEV 139 (302)
Q Consensus 70 i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~------~~~~~---~~~~~~~~~~~-~~~~~~~~~~~v 139 (302)
+++.|++||+++|+||||||||||+++|+|+++|++|++.+. -+++. ........... ..... ..+.+
T Consensus 305 ~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~~--~~~~~ 382 (538)
T 1yqt_A 305 EPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVAYKPQYIKADYEGTVYELLSKIDASKLN--SNFYK 382 (538)
T ss_dssp CCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHT--CHHHH
T ss_pred CccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECceEEEEecCCcCCCCCcHHHHHHhhhccCCC--HHHHH
Confidence 344568999999999999999999999999999999987541 11111 00111111100 00000 00000
Q ss_pred eeee-eecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcC-CCcEEEEEEe
Q psy2071 140 GYSI-RFEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVIKQRA-DLKLVIMSAT 216 (302)
Q Consensus 140 ~~~~-~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~-~~~~~ii~~t 216 (302)
...+ .+......++.+..|||||+||++||++|+.+|++||||| ||+++|+.. ..+.++++... +.|.|||++|
T Consensus 383 ~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDE---Pt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vs 459 (538)
T 1yqt_A 383 TELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDE---PSAYLDVEQRLAVSRAIRHLMEKNEKTALVVE 459 (538)
T ss_dssp HHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEEC---TTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEC
T ss_pred HHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeC---CcccCCHHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 0000 1111123456788999999999999999999999999999 999999887 77778877653 3478999999
Q ss_pred cCHHHHHhhccCCCeee
Q psy2071 217 LDAGKFQQYFDNAPLMN 233 (302)
Q Consensus 217 hd~~~~~~~~d~~~~l~ 233 (302)
||++++..+||++++|+
T Consensus 460 Hd~~~~~~~~drv~vl~ 476 (538)
T 1yqt_A 460 HDVLMIDYVSDRLMVFE 476 (538)
T ss_dssp SCHHHHHHHCSEEEEEE
T ss_pred CCHHHHHHhCCEEEEEe
Confidence 99999999999999997
No 50
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.94 E-value=1.9e-28 Score=238.78 Aligned_cols=159 Identities=14% Similarity=0.118 Sum_probs=113.5
Q ss_pred HHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEee------cCch---hhhHHHHHHHh-hhhh-ccccccc
Q psy2071 70 FMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVAC------TQPR---RVAAMSVAQRV-SEEM-DCQLGQE 138 (302)
Q Consensus 70 i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~------~~~~---~~~~~~~~~~~-~~~~-~~~~~~~ 138 (302)
+++.|.+||+++|+||||||||||+++|+|+++|++|++.+.. +++. ........... .... .......
T Consensus 375 ~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~ 454 (607)
T 3bk7_A 375 EPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTE 454 (607)
T ss_dssp CCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHH
T ss_pred cccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEeeEEEEEecCccCCCCCcHHHHHHhhhccCCCHHHHHHH
Confidence 3445789999999999999999999999999999999875411 1110 00111110000 0000 0000000
Q ss_pred eeeeeeecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcC-CCcEEEEEEe
Q psy2071 139 VGYSIRFEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVIKQRA-DLKLVIMSAT 216 (302)
Q Consensus 139 v~~~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~-~~~~~ii~~t 216 (302)
+.- .+......++.+..|||||+||++||+||+.+|++||||| ||+++|+.. ..+.++++... +.|.|+|++|
T Consensus 455 ~l~--~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDE---Pt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vs 529 (607)
T 3bk7_A 455 LLK--PLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDE---PSAYLDVEQRLAVSRAIRHLMEKNEKTALVVE 529 (607)
T ss_dssp THH--HHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEEC---TTTTCCHHHHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred HHH--HcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeC---CccCCCHHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 100 1111223467788999999999999999999999999999 999999887 67778877653 4578999999
Q ss_pred cCHHHHHhhccCCCeee
Q psy2071 217 LDAGKFQQYFDNAPLMN 233 (302)
Q Consensus 217 hd~~~~~~~~d~~~~l~ 233 (302)
||++++..+||++++|+
T Consensus 530 Hd~~~~~~~adrv~vl~ 546 (607)
T 3bk7_A 530 HDVLMIDYVSDRLIVFE 546 (607)
T ss_dssp SCHHHHHHHCSEEEEEE
T ss_pred CCHHHHHHhCCEEEEEc
Confidence 99999999999999997
No 51
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.94 E-value=2.8e-28 Score=237.35 Aligned_cols=162 Identities=17% Similarity=0.134 Sum_probs=113.6
Q ss_pred HHHHHHHHHhC-----CEEEEEccCCCCccchhhhhhhcccccCCCE------EEeecCchhhhHHHHHHHhhhhhcc--
Q psy2071 67 RTEFMTLLAQN-----QCIVLVGETGSGKTTQIPQWCVEYSKSVGAK------AVACTQPRRVAAMSVAQRVSEEMDC-- 133 (302)
Q Consensus 67 ~~~i~~~i~~g-----~i~~liG~nGsGKSTll~~i~g~~~~~~G~~------~i~~~~~~~~~~~~~~~~~~~~~~~-- 133 (302)
.+++++.+.+| |+++|+||||||||||+++|+|+++|++|.. .+..+.........+.+.+......
T Consensus 363 l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~~~~~i~~~~q~~~~~~~~tv~e~~~~~~~~~~ 442 (608)
T 3j16_B 363 QGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIAPKFPGTVRQLFFKKIRGQF 442 (608)
T ss_dssp CSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCCCCSCCEEEECSSCCCCCCSBHHHHHHHHCSSTT
T ss_pred cCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcCccCCcEEEecccccccCCccHHHHHHHHhhccc
Confidence 45677788877 8899999999999999999999999999952 2211111000000011111000000
Q ss_pred ---ccccceeeeeeecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcC-CC
Q psy2071 134 ---QLGQEVGYSIRFEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVIKQRA-DL 208 (302)
Q Consensus 134 ---~~~~~v~~~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~-~~ 208 (302)
.....+.- .+......++.+..|||||+||++||+||+.+|++||||| ||+++|+.. ..+.+++++.. +.
T Consensus 443 ~~~~~~~~~l~--~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDE---PT~gLD~~~~~~i~~ll~~l~~~~ 517 (608)
T 3j16_B 443 LNPQFQTDVVK--PLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDE---PSAYLDSEQRIICSKVIRRFILHN 517 (608)
T ss_dssp TSHHHHHHTHH--HHTSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECC---TTTTCCHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHH--HcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEEC---CCCCCCHHHHHHHHHHHHHHHHhC
Confidence 00000000 1111223466788999999999999999999999999999 999999877 66777777643 45
Q ss_pred cEEEEEEecCHHHHHhhccCCCeee
Q psy2071 209 KLVIMSATLDAGKFQQYFDNAPLMN 233 (302)
Q Consensus 209 ~~~ii~~thd~~~~~~~~d~~~~l~ 233 (302)
|.|||++|||++++..+||++++|+
T Consensus 518 g~tviivtHdl~~~~~~aDrvivl~ 542 (608)
T 3j16_B 518 KKTAFIVEHDFIMATYLADKVIVFE 542 (608)
T ss_dssp TCEEEEECSCHHHHHHHCSEEEECE
T ss_pred CCEEEEEeCCHHHHHHhCCEEEEEe
Confidence 8899999999999999999999997
No 52
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.93 E-value=2.1e-27 Score=235.14 Aligned_cols=163 Identities=14% Similarity=0.134 Sum_probs=104.4
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchh---------------------hhhhhcccccCC-------CEEEeecCch-
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQI---------------------PQWCVEYSKSVG-------AKAVACTQPR- 116 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll---------------------~~i~g~~~~~~G-------~~~i~~~~~~- 116 (302)
+++++++.|++|++++|+||||||||||+ +++.++..|+.| .+.+.+....
T Consensus 33 ~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~~~ 112 (670)
T 3ux8_A 33 NLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTTSR 112 (670)
T ss_dssp TCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC---
T ss_pred ceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchhhc
Confidence 57899999999999999999999999998 778888888744 3444433211
Q ss_pred ----hhhHHHHH-----------------HHhhhhhccccccceeeeeeec--------------------------CC-
Q psy2071 117 ----RVAAMSVA-----------------QRVSEEMDCQLGQEVGYSIRFE--------------------------DC- 148 (302)
Q Consensus 117 ----~~~~~~~~-----------------~~~~~~~~~~~~~~v~~~~~~~--------------------------~~- 148 (302)
.++.+... ..+......++.+++.+..... ..
T Consensus 113 ~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gL~ 192 (670)
T 3ux8_A 113 NPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGFLQNVGLD 192 (670)
T ss_dssp --CCBHHHHTTCC-------------------------CC--------------------------CHHHHHHHHHTTCT
T ss_pred cchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHHHHcCCc
Confidence 11111000 0011112234555544321100 00
Q ss_pred -CCccccccccCHHHHHHHhccccCCCCCc--EEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHh
Q psy2071 149 -SSPKTVLKYMTDGMLLREGMSDPMLENYQ--VILLDEAHERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQ 224 (302)
Q Consensus 149 -~~~~~~~~~lS~G~~qr~~la~al~~~p~--lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~ 224 (302)
...++.+..|||||+||++|||||+.+|+ +||||| ||+++|+.. ..+.++++..++.|.|||++|||++.+.
T Consensus 193 ~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDE---PtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~- 268 (670)
T 3ux8_A 193 YLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDE---PSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTML- 268 (670)
T ss_dssp TCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEEC---TTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCCHHHHH-
T ss_pred hhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEEC---CccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHh-
Confidence 01346678899999999999999999998 999999 999999877 7788888776666899999999999765
Q ss_pred hccCCCee
Q psy2071 225 YFDNAPLM 232 (302)
Q Consensus 225 ~~d~~~~l 232 (302)
+||++++|
T Consensus 269 ~~d~ii~l 276 (670)
T 3ux8_A 269 AADYLIDI 276 (670)
T ss_dssp HCSEEEEE
T ss_pred hCCEEEEe
Confidence 69999999
No 53
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.92 E-value=1.2e-27 Score=251.55 Aligned_cols=167 Identities=17% Similarity=0.255 Sum_probs=133.6
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhh---h---hhccccccce
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVS---E---EMDCQLGQEV 139 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~---~---~~~~~~~~~v 139 (302)
+++++++.|++||.+||+|+||||||||+++|.+++.|++|.|.++|.+.+.+....+..+++ + .+..++.+|+
T Consensus 1094 VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNI 1173 (1321)
T 4f4c_A 1094 ILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENI 1173 (1321)
T ss_dssp SEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSEEHHHHH
T ss_pred cccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHhheEEECCCCEeeCccHHHHH
Confidence 588999999999999999999999999999999999999999999999887766555554432 2 2355777887
Q ss_pred eeeeeecCC----------------------CCccccc----cccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHH
Q psy2071 140 GYSIRFEDC----------------------SSPKTVL----KYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDI 193 (302)
Q Consensus 140 ~~~~~~~~~----------------------~~~~~~~----~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~ 193 (302)
.|...-... ...++.+ ..||||||||++|||||+.+|++||||| ||+++|.
T Consensus 1174 ~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr~~~ILiLDE---aTSaLD~ 1250 (1321)
T 4f4c_A 1174 IYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDE---ATSALDT 1250 (1321)
T ss_dssp SSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHSCCSEEEEES---CCCSTTS
T ss_pred hccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHHhCCCEEEEeC---ccccCCH
Confidence 765321110 0123333 3499999999999999999999999999 9999998
Q ss_pred HH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 194 LM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 194 ~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
.. ..+.+.+++..+ +.|+|+++|.++.+. .||+|+||+ .|+.
T Consensus 1251 ~tE~~Iq~~l~~~~~-~~TvI~IAHRLsTi~-~aD~I~Vld-~G~I 1293 (1321)
T 4f4c_A 1251 ESEKVVQEALDRARE-GRTCIVIAHRLNTVM-NADCIAVVS-NGTI 1293 (1321)
T ss_dssp HHHHHHHHHHTTTSS-SSEEEEECSSSSTTT-TCSEEEEES-SSSE
T ss_pred HHHHHHHHHHHHHcC-CCEEEEeccCHHHHH-hCCEEEEEE-CCEE
Confidence 87 778887765433 679999999998875 599999999 6653
No 54
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.92 E-value=1.7e-27 Score=249.89 Aligned_cols=167 Identities=17% Similarity=0.210 Sum_probs=128.6
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHh---hhh---hccccccce
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRV---SEE---MDCQLGQEV 139 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~---~~~---~~~~~~~~v 139 (302)
+++++++.|++|++++|+||||||||||+++|+|+++|++|++.++|.+.+..........+ .++ +..++.+|+
T Consensus 405 vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi 484 (1284)
T 3g5u_A 405 ILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENI 484 (1284)
T ss_dssp SEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSSCHHHHH
T ss_pred ceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhheEEEcCCCccCCccHHHHH
Confidence 57899999999999999999999999999999999999999999999876554433333222 222 234666666
Q ss_pred eeeeeecC-------------------C-CCccc----cccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH
Q psy2071 140 GYSIRFED-------------------C-SSPKT----VLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM 195 (302)
Q Consensus 140 ~~~~~~~~-------------------~-~~~~~----~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~ 195 (302)
.+...... . ...++ ....||||||||++|||||+.+|++||||| ||+++|+..
T Consensus 485 ~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~iliLDE---pts~LD~~~ 561 (1284)
T 3g5u_A 485 RYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDE---ATSALDTES 561 (1284)
T ss_dssp HHHCSSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCSEEEEES---TTCSSCHHH
T ss_pred hcCCCCCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhcCCCEEEEEC---CCCCCCHHH
Confidence 54321000 0 01112 234699999999999999999999999999 999999877
Q ss_pred -HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 196 -GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 196 -~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
..+.+.++...+ +.|+|++||+++.+.. ||++++|+ .|+.
T Consensus 562 ~~~i~~~l~~~~~-~~t~i~itH~l~~i~~-~d~i~vl~-~G~i 602 (1284)
T 3g5u_A 562 EAVVQAALDKARE-GRTTIVIAHRLSTVRN-ADVIAGFD-GGVI 602 (1284)
T ss_dssp HHHHHHHHHHHHT-TSEEEEECSCHHHHTT-CSEEEECS-SSCC
T ss_pred HHHHHHHHHHHcC-CCEEEEEecCHHHHHc-CCEEEEEE-CCEE
Confidence 677777765443 7899999999999865 99999998 6654
No 55
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.92 E-value=1.5e-27 Score=250.31 Aligned_cols=167 Identities=18% Similarity=0.252 Sum_probs=129.2
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHH---hhh---hhccccccce
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQR---VSE---EMDCQLGQEV 139 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~---~~~---~~~~~~~~~v 139 (302)
+++++++.|++||+++|+||||||||||+++|+|+++|++|++.++|.+.+.......... +.+ .+..++.+|+
T Consensus 1048 ~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi 1127 (1284)
T 3g5u_A 1048 VLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENI 1127 (1284)
T ss_dssp SBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTTSCEEEESSCCCCSSBHHHHH
T ss_pred eecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHHhceEEECCCCccccccHHHHH
Confidence 5789999999999999999999999999999999999999999999987654433222222 222 2244666666
Q ss_pred eeeeeecCC----------------------CCcccc----ccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHH
Q psy2071 140 GYSIRFEDC----------------------SSPKTV----LKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDI 193 (302)
Q Consensus 140 ~~~~~~~~~----------------------~~~~~~----~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~ 193 (302)
.+....... ...++. ...||||||||++|||||+.+|++||||| ||+++|+
T Consensus 1128 ~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~~p~iLiLDE---pTs~lD~ 1204 (1284)
T 3g5u_A 1128 AYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDE---ATSALDT 1204 (1284)
T ss_dssp TCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHHCCSSEEEES---CSSSCCH
T ss_pred hccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHHHcCCCEEEEeC---CcccCCH
Confidence 553211000 011222 24699999999999999999999999999 9999998
Q ss_pred HH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcC
Q psy2071 194 LM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 194 ~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
.. ..+.+.++...+ |.|+|++|||++.+. .||++++|+ .|+.
T Consensus 1205 ~~~~~i~~~l~~~~~-~~tvi~isH~l~~i~-~~dri~vl~-~G~i 1247 (1284)
T 3g5u_A 1205 ESEKVVQEALDKARE-GRTCIVIAHRLSTIQ-NADLIVVIQ-NGKV 1247 (1284)
T ss_dssp HHHHHHHHHHHHHSS-SSCEEEECSCTTGGG-SCSEEEEEE-TBEE
T ss_pred HHHHHHHHHHHHhCC-CCEEEEEecCHHHHH-cCCEEEEEE-CCEE
Confidence 87 778888876543 789999999999985 599999998 6653
No 56
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.91 E-value=4.2e-24 Score=213.96 Aligned_cols=212 Identities=65% Similarity=1.001 Sum_probs=181.2
Q ss_pred CCCCCCCCCChhhHHHHHhhcCCChhHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCC-CEEEeecCchh
Q psy2071 39 VNPFTGYPYTPRYHELHRKRITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVG-AKAVACTQPRR 117 (302)
Q Consensus 39 ~~~~~~~~~~~~~~~l~~~r~~lp~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G-~~~i~~~~~~~ 117 (302)
.+||...++.+++.++...|..+|++...+.|...+..|++++|+|||||||||+++++++...+..| ...+....|++
T Consensus 71 ~~~f~~~~l~~~~~~~l~~r~~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTtllp~ll~~~~~~~~~g~~ilvl~P~r 150 (773)
T 2xau_A 71 INPFTGREFTPKYVDILKIRRELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQPRR 150 (773)
T ss_dssp BCTTTCSBCCHHHHHHHHHHTTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHCGGGGTCEEEEEESCH
T ss_pred CCCccccCCCHHHHHHHHHhhcCChHHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHHHhccccCCCceEEecCchH
Confidence 56788899999999999999999999999999999999999999999999999999999876655542 23344567788
Q ss_pred hhHHHHHHHhhhhhccccccceeeeeeecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHHHH
Q psy2071 118 VAAMSVAQRVSEEMDCQLGQEVGYSIRFEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILMGV 197 (302)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~~~ 197 (302)
..+..++.++...++..++..+|+.+++......++.+..+|.|+++|..++++++.++++||+||+|++....|.....
T Consensus 151 ~La~q~~~~l~~~~~~~v~~~vG~~i~~~~~~~~~~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~ 230 (773)
T 2xau_A 151 VAAMSVAQRVAEEMDVKLGEEVGYSIRFENKTSNKTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGL 230 (773)
T ss_dssp HHHHHHHHHHHHHTTCCBTTTEEEEETTEEECCTTCSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCchhheecceeccccccCCCCCEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHH
Confidence 77778888888888888888999887776655567788999999999999999999999999999988766666666677
Q ss_pred HHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCcCCccceeecCCCC
Q psy2071 198 LKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRTHPVEIFYTPEPP 250 (302)
Q Consensus 198 l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~~~~~~~~~~~~~~ 250 (302)
+..+...+.+..++++++||+.+.+.++++...++.++|+.+|++++|.+.+.
T Consensus 231 l~~l~~~~~~~~iIl~SAT~~~~~l~~~~~~~~vi~v~gr~~pv~~~~~~~~~ 283 (773)
T 2xau_A 231 LKQVVKRRPDLKIIIMSATLDAEKFQRYFNDAPLLAVPGRTYPVELYYTPEFQ 283 (773)
T ss_dssp HHHHHHHCTTCEEEEEESCSCCHHHHHHTTSCCEEECCCCCCCEEEECCSSCC
T ss_pred HHHHHHhCCCceEEEEeccccHHHHHHHhcCCCcccccCcccceEEEEecCCc
Confidence 88887766677788899999999999999999999999999999999987644
No 57
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.91 E-value=2e-26 Score=232.56 Aligned_cols=79 Identities=18% Similarity=0.172 Sum_probs=69.5
Q ss_pred ccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCe
Q psy2071 153 TVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPL 231 (302)
Q Consensus 153 ~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~ 231 (302)
+.+..|||||+||++||++|+.+|++||||| ||+++|+.. ..+.++++.. +.+||++|||++++..+||++++
T Consensus 897 ~~~~~LSGGQkQRVaLArAL~~~P~LLLLDE---PT~gLD~~s~~~L~~~L~~~---g~tVIiISHD~e~v~~l~DrViv 970 (986)
T 2iw3_A 897 SRIRGLSGGQKVKLVLAAGTWQRPHLIVLDE---PTNYLDRDSLGALSKALKEF---EGGVIIITHSAEFTKNLTEEVWA 970 (986)
T ss_dssp SCGGGCCHHHHHHHHHHHHHTTCCSEEEEEC---GGGTCCHHHHHHHHHHHHSC---SSEEEEECSCHHHHTTTCCEEEC
T ss_pred CCccccCHHHHHHHHHHHHHHhCCCEEEEEC---CccCCCHHHHHHHHHHHHHh---CCEEEEEECCHHHHHHhCCEEEE
Confidence 4567899999999999999999999999999 999999877 6677776554 45899999999999999999999
Q ss_pred eeecCcC
Q psy2071 232 MNVPGRT 238 (302)
Q Consensus 232 l~i~g~~ 238 (302)
|+ .|+.
T Consensus 971 L~-~G~I 976 (986)
T 2iw3_A 971 VK-DGRM 976 (986)
T ss_dssp CB-TTBC
T ss_pred EE-CCEE
Confidence 98 7764
No 58
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.91 E-value=1.4e-26 Score=243.56 Aligned_cols=167 Identities=18% Similarity=0.240 Sum_probs=130.4
Q ss_pred HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHh---hh---hhccccccc
Q psy2071 65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRV---SE---EMDCQLGQE 138 (302)
Q Consensus 65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~---~~---~~~~~~~~~ 138 (302)
.+++++++.|++|+.++|+||+|||||||+++|+|++.|++|.+.++|.+.+..........+ .+ .++.++.+|
T Consensus 432 ~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~eN 511 (1321)
T 4f4c_A 432 PILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEEN 511 (1321)
T ss_dssp CSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSEEHHHH
T ss_pred ceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHhhcccccCCcceeeCCchhHH
Confidence 357899999999999999999999999999999999999999999999887766554444433 22 235577777
Q ss_pred eeeeeeecC--------------------CCCccccc----cccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHH
Q psy2071 139 VGYSIRFED--------------------CSSPKTVL----KYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDIL 194 (302)
Q Consensus 139 v~~~~~~~~--------------------~~~~~~~~----~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~ 194 (302)
+.|...... ....+|.+ ..||||||||++||||++.+|+++|||| ||+++|..
T Consensus 512 I~~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~IliLDE---~tSaLD~~ 588 (1321)
T 4f4c_A 512 ISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDE---ATSALDAE 588 (1321)
T ss_dssp HHTTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSEEEEES---TTTTSCTT
T ss_pred HhhhcccchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCCCEEEEec---ccccCCHH
Confidence 766431100 00123333 3499999999999999999999999999 99999976
Q ss_pred H-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeeeecCc
Q psy2071 195 M-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGR 237 (302)
Q Consensus 195 ~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~ 237 (302)
. ..+.+.+....+ +.|+|++||.+..+ ..||+|++|+ .|+
T Consensus 589 te~~i~~~l~~~~~-~~T~iiiaHrls~i-~~aD~Iivl~-~G~ 629 (1321)
T 4f4c_A 589 SEGIVQQALDKAAK-GRTTIIIAHRLSTI-RNADLIISCK-NGQ 629 (1321)
T ss_dssp THHHHHHHHHHHHT-TSEEEEECSCTTTT-TTCSEEEEEE-TTE
T ss_pred HHHHHHHHHHHHhC-CCEEEEEcccHHHH-HhCCEEEEee-CCe
Confidence 6 666676665433 67888899999877 5799999998 554
No 59
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.90 E-value=6.8e-26 Score=224.37 Aligned_cols=77 Identities=13% Similarity=0.095 Sum_probs=68.2
Q ss_pred cccccccCHHHHHHHhccccCCCCC---cEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhcc
Q psy2071 152 KTVLKYMTDGMLLREGMSDPMLENY---QVILLDEAHERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFD 227 (302)
Q Consensus 152 ~~~~~~lS~G~~qr~~la~al~~~p---~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d 227 (302)
++.+..|||||+||++|||||+.+| ++||||| ||+++|+.. ..+.++++...+.|.|||++|||++.+ .+||
T Consensus 538 ~~~~~~LSgG~~qrv~iAraL~~~p~~p~llllDE---Pt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~~~-~~~d 613 (670)
T 3ux8_A 538 GQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDE---PTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVI-KTAD 613 (670)
T ss_dssp TCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEES---TTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHH-TTCS
T ss_pred cCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEEeC---CCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH-HhCC
Confidence 4567889999999999999999886 5999999 999999887 778888877665689999999999987 5799
Q ss_pred CCCee
Q psy2071 228 NAPLM 232 (302)
Q Consensus 228 ~~~~l 232 (302)
++++|
T Consensus 614 ~i~~l 618 (670)
T 3ux8_A 614 YIIDL 618 (670)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 99999
No 60
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.89 E-value=6.1e-25 Score=221.77 Aligned_cols=165 Identities=13% Similarity=0.070 Sum_probs=110.4
Q ss_pred HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhh-ccc--ccCC--CEEEeecCc-hhhhHHHHHHHhhhhhccccccc
Q psy2071 65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCV-EYS--KSVG--AKAVACTQP-RRVAAMSVAQRVSEEMDCQLGQE 138 (302)
Q Consensus 65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g-~~~--~~~G--~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 138 (302)
.+++++++.|++|++++|+||||||||||+++|+| .+. +..+ .+.+..+++ .......+...+...... ..+.
T Consensus 449 ~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~LagG~i~g~~~~~~~~~~~v~q~~~~~~~~ltv~e~l~~~~~~-~~~~ 527 (986)
T 2iw3_A 449 ILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVDGFPTQEECRTVYVEHDIDGTHSDTSVLDFVFESGVG-TKEA 527 (986)
T ss_dssp EEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHHTCSTTCCCTTTSCEEETTCCCCCCCTTSBHHHHHHTTCSS-CHHH
T ss_pred EeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCccccceeEEEEcccccccccCCcHHHHHHHhhcC-HHHH
Confidence 35788999999999999999999999999999984 220 0001 111111111 000001111111110000 0001
Q ss_pred eeeeeeecCC--CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEE
Q psy2071 139 VGYSIRFEDC--SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVIKQRADLKLVIMSA 215 (302)
Q Consensus 139 v~~~~~~~~~--~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~ 215 (302)
+...+..... ...++.+..|||||+||++||++|+.+|++||||| ||+++|+.. ..+.+++.. .|.|+|++
T Consensus 528 v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDE---PTs~LD~~~~~~l~~~L~~---~g~tvIiv 601 (986)
T 2iw3_A 528 IKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDE---PTNHLDTVNVAWLVNYLNT---CGITSITI 601 (986)
T ss_dssp HHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEES---TTTTCCHHHHHHHHHHHHH---SCSEEEEE
T ss_pred HHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEC---CccCCCHHHHHHHHHHHHh---CCCEEEEE
Confidence 1111111111 12356778999999999999999999999999999 999999887 778888877 37899999
Q ss_pred ecCHHHHHhhccCCCeeeecCc
Q psy2071 216 TLDAGKFQQYFDNAPLMNVPGR 237 (302)
Q Consensus 216 thd~~~~~~~~d~~~~l~i~g~ 237 (302)
|||++++..+||++++|+ .|+
T Consensus 602 SHdl~~l~~~adrii~L~-~G~ 622 (986)
T 2iw3_A 602 SHDSVFLDNVCEYIINYE-GLK 622 (986)
T ss_dssp CSCHHHHHHHCSEEEEEE-TTE
T ss_pred ECCHHHHHHhCCEEEEEE-CCe
Confidence 999999999999999998 444
No 61
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.89 E-value=1.7e-25 Score=184.83 Aligned_cols=135 Identities=13% Similarity=0.029 Sum_probs=89.9
Q ss_pred HHHHHHhCCEEEEEccCCCCccchhh------------hhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhhcccccc
Q psy2071 70 FMTLLAQNQCIVLVGETGSGKTTQIP------------QWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQ 137 (302)
Q Consensus 70 i~~~i~~g~i~~liG~nGsGKSTll~------------~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (302)
+++.+++|++++|+||||||||||++ .+.|+..++.|...+.+..... ....... ..
T Consensus 2 vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~-----~~~~~~~------~~ 70 (171)
T 4gp7_A 2 MKLTIPELSLVVLIGSSGSGKSTFAKKHFKPTEVISSDFCRGLMSDDENDQTVTGAAFDV-----LHYIVSK------RL 70 (171)
T ss_dssp EEEEEESSEEEEEECCTTSCHHHHHHHHSCGGGEEEHHHHHHHHCSSTTCGGGHHHHHHH-----HHHHHHH------HH
T ss_pred ccccCCCCEEEEEECCCCCCHHHHHHHHccCCeEEccHHHHHHhcCcccchhhHHHHHHH-----HHHHHHH------HH
Confidence 35678899999999999999999999 5555555554433222110000 0000000 00
Q ss_pred ceeeeeeecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHH----------------H-HHHHH
Q psy2071 138 EVGYSIRFEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDIL----------------M-GVLKE 200 (302)
Q Consensus 138 ~v~~~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~----------------~-~~l~~ 200 (302)
..++..... .....|+|++||++||++++.+|++|+||| |++++|+. . ..+.+
T Consensus 71 ~~g~~~~~~-------~~~~~s~g~~qrv~iAral~~~p~~lllDE---Pt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~ 140 (171)
T 4gp7_A 71 QLGKLTVVD-------ATNVQESARKPLIEMAKDYHCFPVAVVFNL---PEKVCQERNKNRTDRQVEEYVIRKHTQQMKK 140 (171)
T ss_dssp HTTCCEEEE-------SCCCSHHHHHHHHHHHHHTTCEEEEEEECC---CHHHHHHHHHTCSSCCCCHHHHHHHHHHHHH
T ss_pred hCCCeEEEE-------CCCCCHHHHHHHHHHHHHcCCcEEEEEEeC---CHHHHHHHHhcccCCCCCHHHHHHHHHHhhh
Confidence 112222111 112349999999999999999999999999 99999987 3 45555
Q ss_pred HHHHcCCCcEEEEEEecCHHHHHhh
Q psy2071 201 VIKQRADLKLVIMSATLDAGKFQQY 225 (302)
Q Consensus 201 ll~~~~~~~~~ii~~thd~~~~~~~ 225 (302)
+++...+.|.|+|++|||++++..+
T Consensus 141 ~l~~l~~~g~tvi~vtH~~~~~~~~ 165 (171)
T 4gp7_A 141 SIKGLQREGFRYVYILNSPEEVEEV 165 (171)
T ss_dssp HSTTHHHHTCSEEEEECSHHHHHHE
T ss_pred hhhhHHhcCCcEEEEeCCHHHhhhh
Confidence 5554444489999999999998754
No 62
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.88 E-value=2.1e-24 Score=183.72 Aligned_cols=138 Identities=14% Similarity=0.065 Sum_probs=82.8
Q ss_pred HHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhhccccccce-eeee----eecC
Q psy2071 73 LLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEV-GYSI----RFED 147 (302)
Q Consensus 73 ~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~----~~~~ 147 (302)
.|++|++++|+||||||||||+++|+|+ +|++|.+..................+.+.. .+++ .+.. ....
T Consensus 18 ~i~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~~~~~~~~~~~~~~ig~v~q~~----~enl~~~~~~~~~~~~~ 92 (208)
T 3b85_A 18 AIDTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSRIILTRPAVEAGEKLGFLPGTL----NEKIDPYLRPLHDALRD 92 (208)
T ss_dssp HHHHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSEEEEEECSCCTTCCCCSSCC----------CTTTHHHHHHHTT
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeeeeEEecCCchhhhcceEEecCCH----HHHHHHHHHHHHHHHHH
Confidence 3699999999999999999999999999 999998843111000000000000111110 1111 1100 0000
Q ss_pred ---CCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEEEecCHHHHHh
Q psy2071 148 ---CSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILMGVLKEVIKQRADLKLVIMSATLDAGKFQQ 224 (302)
Q Consensus 148 ---~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~~~l~~ll~~~~~~~~~ii~~thd~~~~~~ 224 (302)
.......+.. ..||+||++||+||+.+|++||||| ||++ ....+.+++... +.+.||| +|||++.+..
T Consensus 93 ~~~~~~~~~~l~~-glGq~qrv~lAraL~~~p~lllLDE---Pts~---~~~~l~~~l~~l-~~g~tii-vtHd~~~~~~ 163 (208)
T 3b85_A 93 MVEPEVIPKLMEA-GIVEVAPLAYMRGRTLNDAFVILDE---AQNT---TPAQMKMFLTRL-GFGSKMV-VTGDITQVDL 163 (208)
T ss_dssp TSCTTHHHHHHHT-TSEEEEEGGGGTTCCBCSEEEEECS---GGGC---CHHHHHHHHTTB-CTTCEEE-EEEC------
T ss_pred hccHHHHHHHHHh-CCchHHHHHHHHHHhcCCCEEEEeC---Cccc---cHHHHHHHHHHh-cCCCEEE-EECCHHHHhC
Confidence 0001111222 3399999999999999999999999 9999 336677777776 5588999 9999987764
No 63
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.88 E-value=1.3e-24 Score=205.33 Aligned_cols=161 Identities=12% Similarity=0.029 Sum_probs=113.4
Q ss_pred HHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCC-C-EEEeecCchhhhHHHHHHHhhh---hhccccccceeee
Q psy2071 68 TEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVG-A-KAVACTQPRRVAAMSVAQRVSE---EMDCQLGQEVGYS 142 (302)
Q Consensus 68 ~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G-~-~~i~~~~~~~~~~~~~~~~~~~---~~~~~~~~~v~~~ 142 (302)
.++++.+++|++++|+||||||||||+++|+|++.|++| . +.+++...+.+... .+.... ....++.+++ +.
T Consensus 129 ~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~~~~~i~~v--pq~~~l~~~~~~~tv~eni-~~ 205 (460)
T 2npi_A 129 EKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLDPQQPIFTV--PGCISATPISDILDAQLPT-WG 205 (460)
T ss_dssp HHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECCTTSCSSSC--SSCCEEEECCSCCCTTCTT-CS
T ss_pred hcCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCCccCCeeee--ccchhhcccccccchhhhh-cc
Confidence 479999999999999999999999999999999999999 8 99987321112111 111100 0011222222 21
Q ss_pred ee----------------ecCCCCccccccccCHHHHHHHhcccc--CCCCCcE----EEEcCCCCCCcchHHHHHHHHH
Q psy2071 143 IR----------------FEDCSSPKTVLKYMTDGMLLREGMSDP--MLENYQV----ILLDEAHERTLATDILMGVLKE 200 (302)
Q Consensus 143 ~~----------------~~~~~~~~~~~~~lS~G~~qr~~la~a--l~~~p~l----liLDE~~~p~~~lD~~~~~l~~ 200 (302)
.. ......... ...||+||+||+++|++ |+.+|++ |||||. |++++|+....+.+
T Consensus 206 ~~~~~~~~~~~~~~~ll~~~gl~~~~~-~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEp--Pts~LD~~~~~l~~ 282 (460)
T 2npi_A 206 QSLTSGATLLHNKQPMVKNFGLERINE-NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTP--SISQLDENLAELHH 282 (460)
T ss_dssp CBCBSSCCSSCCBCCEECCCCSSSGGG-CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECC--CGGGSCSSCHHHHH
T ss_pred cccccCcchHHHHHHHHHHhCCCcccc-hhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCC--cccccChhHHHHHH
Confidence 11 111111111 56799999999999999 9999999 999994 58889976556666
Q ss_pred HHHHcCCCcEEEEEEecCHH------HHHhhccC-----CCeeeecCc
Q psy2071 201 VIKQRADLKLVIMSATLDAG------KFQQYFDN-----APLMNVPGR 237 (302)
Q Consensus 201 ll~~~~~~~~~ii~~thd~~------~~~~~~d~-----~~~l~i~g~ 237 (302)
+++.. +.+++++||+.+ ++..+||+ +++|+-.|+
T Consensus 283 l~~~~---~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~ 327 (460)
T 2npi_A 283 IIEKL---NVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDG 327 (460)
T ss_dssp HHHHT---TCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTT
T ss_pred HHHHh---CCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCc
Confidence 66553 667888899877 88899999 888863343
No 64
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.86 E-value=8.1e-24 Score=211.64 Aligned_cols=78 Identities=13% Similarity=0.035 Sum_probs=69.9
Q ss_pred cccccccCHHHHHHHhccccCCCC---CcEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhcc
Q psy2071 152 KTVLKYMTDGMLLREGMSDPMLEN---YQVILLDEAHERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFD 227 (302)
Q Consensus 152 ~~~~~~lS~G~~qr~~la~al~~~---p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d 227 (302)
++.+..|||||+||++||++|+.+ |++||||| ||+++|+.. ..+.+++..+.+.|.|||++|||++++ .+||
T Consensus 725 ~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDE---PTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~~i-~~aD 800 (842)
T 2vf7_A 725 GQPATELSGGEAQRIKLATELRRSGRGGTVYVLDE---PTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQVV-AASD 800 (842)
T ss_dssp TCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEEC---TTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHH-TTCS
T ss_pred cCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEEC---CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHH-HhCC
Confidence 456778999999999999999996 79999999 999999877 778888887666689999999999999 7899
Q ss_pred CCCeee
Q psy2071 228 NAPLMN 233 (302)
Q Consensus 228 ~~~~l~ 233 (302)
++++|.
T Consensus 801 rii~L~ 806 (842)
T 2vf7_A 801 WVLDIG 806 (842)
T ss_dssp EEEEEC
T ss_pred EEEEEC
Confidence 999994
No 65
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.86 E-value=7.8e-23 Score=169.92 Aligned_cols=139 Identities=12% Similarity=0.033 Sum_probs=89.4
Q ss_pred EEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhh---HHHHHHHhhhhhccccccceeeeeeecCCCCccccc
Q psy2071 79 CIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVA---AMSVAQRVSEEMDCQLGQEVGYSIRFEDCSSPKTVL 155 (302)
Q Consensus 79 i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 155 (302)
.++|+||||||||||+++|+|++. +.+.|....... .......+.+.. +..+++.....+......+...
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-----i~~~g~~~~~~~~~~~~~~ig~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 74 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-----KRAIGFWTEEVRDPETKKRTGFRIITT--EGKKKIFSSKFFTSKKLVGSYG 74 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-----GGEEEEEEEEEC------CCEEEEEET--TCCEEEEEETTCCCSSEETTEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-----CcCCCEEhhhhccccccceeEEEeecC--cHHHHHHHhhcCCccccccccc
Confidence 589999999999999999999985 233332211100 000000011100 1111110000000001234556
Q ss_pred cccCHHHHHHHhcccc-----CCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEe---cCHHHHHhhc
Q psy2071 156 KYMTDGMLLREGMSDP-----MLENYQVILLDEAHERTLATDILM-GVLKEVIKQRADLKLVIMSAT---LDAGKFQQYF 226 (302)
Q Consensus 156 ~~lS~G~~qr~~la~a-----l~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~t---hd~~~~~~~~ 226 (302)
..||+||+||+++|++ ++.+|++|||||++ |++++|+.. ..+.+++.. .+.+++++| ||.+.+..+|
T Consensus 75 ~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEig-p~~~ld~~~~~~l~~~l~~---~~~~~i~~~H~~h~~~~~~~i~ 150 (178)
T 1ye8_A 75 VNVQYFEELAIPILERAYREAKKDRRKVIIIDEIG-KMELFSKKFRDLVRQIMHD---PNVNVVATIPIRDVHPLVKEIR 150 (178)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCS-TTGGGCHHHHHHHHHHHTC---TTSEEEEECCSSCCSHHHHHHH
T ss_pred cCcCHHHHHHHHHHhhccccccccCCCEEEEeCCC-CcccCCHHHHHHHHHHHhc---CCCeEEEEEccCCCchHHHHHH
Confidence 7799999999999996 99999999999987 999999877 677777654 355555566 6999999999
Q ss_pred cC
Q psy2071 227 DN 228 (302)
Q Consensus 227 d~ 228 (302)
++
T Consensus 151 ~r 152 (178)
T 1ye8_A 151 RL 152 (178)
T ss_dssp TC
T ss_pred hc
Confidence 97
No 66
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.85 E-value=3.3e-22 Score=187.06 Aligned_cols=71 Identities=13% Similarity=-0.009 Sum_probs=64.0
Q ss_pred cCHHHHHHHhccccCCCCC--cEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeee
Q psy2071 158 MTDGMLLREGMSDPMLENY--QVILLDEAHERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMN 233 (302)
Q Consensus 158 lS~G~~qr~~la~al~~~p--~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~ 233 (302)
+||||+||++||++|+.+| ++||||| |++++|+.. ..+.++++... .+.+||++||+++.+ .+||++++|.
T Consensus 296 lSgGe~qrl~lA~~l~~~~~~~~LlLDE---pt~~LD~~~~~~l~~~L~~l~-~~~~vi~itH~~~~~-~~~d~i~~l~ 369 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVLGADTPSVVFDE---VDAGIGGAAAIAVAEQLSRLA-DTRQVLVVTHLAQIA-ARAHHHYKVE 369 (415)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSSEEEESS---TTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSCHHHH-TTCSEEEEEE
T ss_pred cCHhHHHHHHHHHHHHhCCCCCEEEEEC---CCCCCCHHHHHHHHHHHHHHh-CCCEEEEEeCcHHHH-hhcCeEEEEE
Confidence 5999999999999999999 9999999 999999887 78888888776 478999999999765 6899999994
No 67
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.84 E-value=2.1e-23 Score=210.25 Aligned_cols=77 Identities=14% Similarity=0.129 Sum_probs=67.4
Q ss_pred ccccccCHHHHHHHhccccCCCCC---cEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccC
Q psy2071 153 TVLKYMTDGMLLREGMSDPMLENY---QVILLDEAHERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDN 228 (302)
Q Consensus 153 ~~~~~lS~G~~qr~~la~al~~~p---~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~ 228 (302)
.....|||||+||++||++|+.+| ++||||| ||++||+.. ..+.++++.+.+.|.|||++|||++.+. .||+
T Consensus 801 q~~~~LSGGErQRV~LAraL~~~p~~p~LLILDE---PTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~~i~-~ADr 876 (916)
T 3pih_A 801 QPATTLSGGEAQRIKLASELRKRDTGRTLYILDE---PTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLDVIK-NADH 876 (916)
T ss_dssp CCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEES---TTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHT-TCSE
T ss_pred CCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEEC---CCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH-hCCE
Confidence 445679999999999999999875 7999999 999999887 7788888876666899999999999875 5999
Q ss_pred CCeee
Q psy2071 229 APLMN 233 (302)
Q Consensus 229 ~~~l~ 233 (302)
+++|.
T Consensus 877 IivLg 881 (916)
T 3pih_A 877 IIDLG 881 (916)
T ss_dssp EEEEE
T ss_pred EEEec
Confidence 99994
No 68
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.84 E-value=8.1e-23 Score=205.07 Aligned_cols=78 Identities=13% Similarity=0.095 Sum_probs=68.8
Q ss_pred cccccccCHHHHHHHhccccCCCCC---cEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhcc
Q psy2071 152 KTVLKYMTDGMLLREGMSDPMLENY---QVILLDEAHERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFD 227 (302)
Q Consensus 152 ~~~~~~lS~G~~qr~~la~al~~~p---~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d 227 (302)
++.+..|||||+||++||++|+.+| ++||||| ||+++|+.. ..+.+++..+.+.|.|||++|||++++ .+||
T Consensus 840 ~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDE---PTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i-~~aD 915 (972)
T 2r6f_A 840 GQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDE---PTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVI-KTAD 915 (972)
T ss_dssp TCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEEC---TTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHH-TTCS
T ss_pred cCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEEC---CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHH-HhCC
Confidence 4566789999999999999999875 9999999 999999887 778888877666689999999999987 5899
Q ss_pred CCCeee
Q psy2071 228 NAPLMN 233 (302)
Q Consensus 228 ~~~~l~ 233 (302)
++++|.
T Consensus 916 rIivL~ 921 (972)
T 2r6f_A 916 YIIDLG 921 (972)
T ss_dssp EEEEEC
T ss_pred EEEEEc
Confidence 999994
No 69
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.82 E-value=2.7e-22 Score=201.92 Aligned_cols=78 Identities=15% Similarity=0.076 Sum_probs=68.7
Q ss_pred cccccccCHHHHHHHhccccCCCCC---cEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhcc
Q psy2071 152 KTVLKYMTDGMLLREGMSDPMLENY---QVILLDEAHERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFD 227 (302)
Q Consensus 152 ~~~~~~lS~G~~qr~~la~al~~~p---~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d 227 (302)
++.+..|||||+||++||++|+.+| ++||||| ||+++|+.. ..+.+++..+.+.|.|||++|||++++ .+||
T Consensus 858 ~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDE---PTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i-~~aD 933 (993)
T 2ygr_A 858 GQPAPTLSGGEAQRVKLASELQKRSTGRTVYILDE---PTTGLHFDDIRKLLNVINGLVDKGNTVIVIEHNLDVI-KTSD 933 (993)
T ss_dssp TCCGGGSCHHHHHHHHHHHHHSSCCCSSEEEEEES---TTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHH-TTCS
T ss_pred cCccccCCHHHHHHHHHHHHHHhCCCCCCEEEEEC---CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHH-HhCC
Confidence 4556789999999999999999865 9999999 999999877 778888877666689999999999987 6899
Q ss_pred CCCeee
Q psy2071 228 NAPLMN 233 (302)
Q Consensus 228 ~~~~l~ 233 (302)
++++|.
T Consensus 934 rIivL~ 939 (993)
T 2ygr_A 934 WIIDLG 939 (993)
T ss_dssp EEEEEE
T ss_pred EEEEEC
Confidence 999994
No 70
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.82 E-value=3.4e-21 Score=175.06 Aligned_cols=132 Identities=13% Similarity=0.041 Sum_probs=101.1
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhhccccccceeeeeee
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRF 145 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 145 (302)
+.+++++.+++|++++|+||||||||||+++|+|+++|+.|.+.+.+....... .....+++..
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~--------------~~~~~i~~~~-- 223 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFK--------------HHKNYTQLFF-- 223 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCS--------------SCSSEEEEEC--
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccc--------------cchhEEEEEe--
Confidence 678999999999999999999999999999999999999999999875311100 0111222211
Q ss_pred cCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEEEecCHHHHHhh
Q psy2071 146 EDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILMGVLKEVIKQRADLKLVIMSATLDAGKFQQY 225 (302)
Q Consensus 146 ~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~~~l~~ll~~~~~~~~~ii~~thd~~~~~~~ 225 (302)
.+||+||++|++||..+|++||||| |++. .. .++++.....+.+++++||+.+ +...
T Consensus 224 -------------ggg~~~r~~la~aL~~~p~ilildE---~~~~--e~----~~~l~~~~~g~~tvi~t~H~~~-~~~~ 280 (330)
T 2pt7_A 224 -------------GGNITSADCLKSCLRMRPDRIILGE---LRSS--EA----YDFYNVLCSGHKGTLTTLHAGS-SEEA 280 (330)
T ss_dssp -------------BTTBCHHHHHHHHTTSCCSEEEECC---CCST--HH----HHHHHHHHTTCCCEEEEEECSS-HHHH
T ss_pred -------------CCChhHHHHHHHHhhhCCCEEEEcC---CChH--HH----HHHHHHHhcCCCEEEEEEcccH-HHHH
Confidence 0899999999999999999999999 8872 22 2333333333457888999988 8889
Q ss_pred ccCCCeeeecCc
Q psy2071 226 FDNAPLMNVPGR 237 (302)
Q Consensus 226 ~d~~~~l~i~g~ 237 (302)
||++.+|. .|.
T Consensus 281 ~dri~~l~-~g~ 291 (330)
T 2pt7_A 281 FIRLANMS-SSN 291 (330)
T ss_dssp HHHHHHHH-HTS
T ss_pred hhhheehh-cCC
Confidence 99999987 443
No 71
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.81 E-value=1e-22 Score=189.50 Aligned_cols=159 Identities=10% Similarity=0.022 Sum_probs=110.1
Q ss_pred HHHHHHHHHHHhCC--------------------EEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHH
Q psy2071 65 EYRTEFMTLLAQNQ--------------------CIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVA 124 (302)
Q Consensus 65 ~~~~~i~~~i~~g~--------------------i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~ 124 (302)
.++++|++.|++|+ +++|+|+||||||||+++|+|+.+|++|.+.+.+.+..+.... .
T Consensus 37 ~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v--~ 114 (413)
T 1tq4_A 37 EILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHP--Y 114 (413)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEE--E
T ss_pred HHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEe--c
Confidence 36899999999999 9999999999999999999999999999998877654321111 0
Q ss_pred HHhhhhhccccccceeeeeeec---------CCCCccccccccCHH--HHHHHhccccCCC----------CCcEEEEcC
Q psy2071 125 QRVSEEMDCQLGQEVGYSIRFE---------DCSSPKTVLKYMTDG--MLLREGMSDPMLE----------NYQVILLDE 183 (302)
Q Consensus 125 ~~~~~~~~~~~~~~v~~~~~~~---------~~~~~~~~~~~lS~G--~~qr~~la~al~~----------~p~lliLDE 183 (302)
+. ......++.++.++..... .....+..+ .+|+| |+||+++|++|+. +|++++|||
T Consensus 115 q~-~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~~~~~~-~lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDE 192 (413)
T 1tq4_A 115 KH-PNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYEYDFFI-IISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNE 192 (413)
T ss_dssp EC-SSCTTEEEEECCCGGGSSCCHHHHHHHTTGGGCSEEE-EEESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHH
T ss_pred cc-cccCCeeehHhhcccchHHHHHHHHHHcCCCccCCeE-EeCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCc
Confidence 10 1112334445554432100 000112222 39999 9999999999999 999999999
Q ss_pred CCCCCcchHHHH-HHHHHHHHHc---------CCCcEEEEEEecCHHH--HHhhccCCC
Q psy2071 184 AHERTLATDILM-GVLKEVIKQR---------ADLKLVIMSATLDAGK--FQQYFDNAP 230 (302)
Q Consensus 184 ~~~p~~~lD~~~-~~l~~ll~~~---------~~~~~~ii~~thd~~~--~~~~~d~~~ 230 (302)
|++++|+.. ..+.++++.. .+...+++++||+++. +.++||++.
T Consensus 193 ---PtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~ 248 (413)
T 1tq4_A 193 ---ADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLI 248 (413)
T ss_dssp ---HTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHH
T ss_pred ---ccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHH
Confidence 999999655 4444444432 1234678888999887 888888764
No 72
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.80 E-value=2.1e-20 Score=172.09 Aligned_cols=82 Identities=20% Similarity=0.162 Sum_probs=72.5
Q ss_pred cccccccCHHHHHHHhccccCC------CCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHh
Q psy2071 152 KTVLKYMTDGMLLREGMSDPML------ENYQVILLDEAHERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQ 224 (302)
Q Consensus 152 ~~~~~~lS~G~~qr~~la~al~------~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~ 224 (302)
+..+..|||||+||++||+||+ .+|++||||| ||+++|+.. ..+.+++....+.|.||+++|||++. ..
T Consensus 274 ~~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDE---pt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~-~~ 349 (365)
T 3qf7_A 274 ERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDE---GFSSLDTENKEKIASVLKELERLNKVIVFITHDREF-SE 349 (365)
T ss_dssp EEEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEES---CCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHH-HT
T ss_pred CCCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeC---CCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHH-HH
Confidence 4567789999999999999998 7999999999 999999887 77888888776678999999999998 67
Q ss_pred hccCCCeeeecCcC
Q psy2071 225 YFDNAPLMNVPGRT 238 (302)
Q Consensus 225 ~~d~~~~l~i~g~~ 238 (302)
+||++++|+ .|+.
T Consensus 350 ~~d~~~~l~-~G~i 362 (365)
T 3qf7_A 350 AFDRKLRIT-GGVV 362 (365)
T ss_dssp TCSCEEEEE-TTEE
T ss_pred hCCEEEEEE-CCEE
Confidence 899999998 6653
No 73
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.80 E-value=8.4e-19 Score=151.72 Aligned_cols=182 Identities=35% Similarity=0.618 Sum_probs=142.1
Q ss_pred hhHHHHHhhcCCChhHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCC---CEEEeecCchhhhHHHHHHH
Q psy2071 50 RYHELHRKRITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVG---AKAVACTQPRRVAAMSVAQR 126 (302)
Q Consensus 50 ~~~~l~~~r~~lp~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G---~~~i~~~~~~~~~~~~~~~~ 126 (302)
.+.++...+..+|.+.+...+...+.+|+.+++.|||||||||++.+++.......| .+.+....|.+..+..+..+
T Consensus 49 ~~~~~~~~~~~~p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~ 128 (235)
T 3llm_A 49 DLQAILQERELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAER 128 (235)
T ss_dssp HHHHHHHHHHTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHH
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHH
Confidence 344566777889999999999999999999999999999999998877654322222 33455566777777777788
Q ss_pred hhhhhccccccceeeeeeecCCCC-ccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHHHHHHHHHHHc
Q psy2071 127 VSEEMDCQLGQEVGYSIRFEDCSS-PKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILMGVLKEVIKQR 205 (302)
Q Consensus 127 ~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~~~l~~ll~~~ 205 (302)
+.......++..+++..++..... .+..+...|.|+..+.... .+.+.++||+||+|+.....|.....++.++...
T Consensus 129 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Ivv~Tpg~l~~~l~~--~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~ 206 (235)
T 3llm_A 129 VAFERGEEPGKSCGYSVRFESILPRPHASIMFCTVGVLLRKLEA--GIRGISHVIVDEIHERDINTDFLLVVLRDVVQAY 206 (235)
T ss_dssp HHHTTTCCTTSSEEEEETTEEECCCSSSEEEEEEHHHHHHHHHH--CCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHhccccCceEEEeechhhccCCCCCeEEEECHHHHHHHHHh--hhcCCcEEEEECCccCCcchHHHHHHHHHHHhhC
Confidence 877777777788888776554332 3455677899998887544 5899999999999986666666667788888777
Q ss_pred CCCcEEEEEEecCHHHHHhhccCCCeee
Q psy2071 206 ADLKLVIMSATLDAGKFQQYFDNAPLMN 233 (302)
Q Consensus 206 ~~~~~~ii~~thd~~~~~~~~d~~~~l~ 233 (302)
.+..+++++||.+.+.+.+|+++.++++
T Consensus 207 ~~~~~il~SAT~~~~~~~~~~~~~pvi~ 234 (235)
T 3llm_A 207 PEVRIVLMSATIDTSMFCEYFFNCPIIE 234 (235)
T ss_dssp TTSEEEEEECSSCCHHHHHHTTSCCCEE
T ss_pred CCCeEEEEecCCCHHHHHHHcCCCCEEe
Confidence 7778999999999999999999988876
No 74
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.78 E-value=1.2e-19 Score=164.36 Aligned_cols=73 Identities=15% Similarity=0.117 Sum_probs=62.1
Q ss_pred cccccccCHHHHHHHhccccCC----CCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhc
Q psy2071 152 KTVLKYMTDGMLLREGMSDPML----ENYQVILLDEAHERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYF 226 (302)
Q Consensus 152 ~~~~~~lS~G~~qr~~la~al~----~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~ 226 (302)
+..+..||+||+||++||++|+ .+|++||||| |++++|+.. ..+.+++....+ +.++|++||+. .+..+|
T Consensus 214 ~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDE---p~~~LD~~~~~~l~~~l~~~~~-~~~vi~~tH~~-~~~~~~ 288 (322)
T 1e69_A 214 DQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDE---VDSPLDDYNAERFKRLLKENSK-HTQFIVITHNK-IVMEAA 288 (322)
T ss_dssp CCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEES---CCSSCCHHHHHHHHHHHHHHTT-TSEEEEECCCT-TGGGGC
T ss_pred cCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeC---CCCCCCHHHHHHHHHHHHHhcC-CCeEEEEECCH-HHHhhC
Confidence 3456789999999999999986 6899999999 999999877 778888877643 77899999996 466789
Q ss_pred cCC
Q psy2071 227 DNA 229 (302)
Q Consensus 227 d~~ 229 (302)
|++
T Consensus 289 d~~ 291 (322)
T 1e69_A 289 DLL 291 (322)
T ss_dssp SEE
T ss_pred ceE
Confidence 987
No 75
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.77 E-value=4.7e-21 Score=162.80 Aligned_cols=161 Identities=12% Similarity=0.022 Sum_probs=90.2
Q ss_pred HHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCch-----hhhHHHHHHHhhhhhccccccceeeeeeec
Q psy2071 72 TLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPR-----RVAAMSVAQRVSEEMDCQLGQEVGYSIRFE 146 (302)
Q Consensus 72 ~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 146 (302)
..|++|++++|+||||||||||+++|+|+++...+.+.+.+..++ .++...+.... ....++.+++.......
T Consensus 15 ~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~--~~~~~~~~~l~~~~~~~ 92 (207)
T 1znw_A 15 QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAPRPGEVDGVDYHFIDPTR--FQQLIDQGELLEWAEIH 92 (207)
T ss_dssp ----CCCEEEEECSTTSSHHHHHHHHHHHSTTCEECCCEESSCCCTTCCBTTTBEECCHHH--HHHHHHTTCEEEEEEEG
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCceEEcccccccCCcccccCCCeeEecCHHH--HHHHHhcCCceeehhhc
Confidence 489999999999999999999999999998522222212111111 11111111010 11112222222111110
Q ss_pred C------CCC--ccccc---------cccCHHHHHHHhccc---cCCCCCcEEEEcCCCCCCcch----HHHH-HHHHHH
Q psy2071 147 D------CSS--PKTVL---------KYMTDGMLLREGMSD---PMLENYQVILLDEAHERTLAT----DILM-GVLKEV 201 (302)
Q Consensus 147 ~------~~~--~~~~~---------~~lS~G~~qr~~la~---al~~~p~lliLDE~~~p~~~l----D~~~-~~l~~l 201 (302)
. ... ....+ -.+.+.+.++-.... +|+.+|++++||| |+.++ |+.. ..+.++
T Consensus 93 ~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~lS~l~~~p~~~~LDe---p~~~l~~~~d~~~~~~l~~~ 169 (207)
T 1znw_A 93 GGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPEAVTVFLAPPSWQDLQA---RLIGRGTETADVIQRRLDTA 169 (207)
T ss_dssp GGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCTTSEEEEEECSCHHHHHH---HHHTTSCSCHHHHHHHHHHH
T ss_pred CchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcCCcEEEEEECCCHHHHHH---HHHhcCCCCHHHHHHHHHHH
Confidence 0 000 00000 224455555544444 7899999999999 98887 6655 567777
Q ss_pred HHHcC-CCcEEEEEEecCHHHHHhhccCCCeeeecCc
Q psy2071 202 IKQRA-DLKLVIMSATLDAGKFQQYFDNAPLMNVPGR 237 (302)
Q Consensus 202 l~~~~-~~~~~ii~~thd~~~~~~~~d~~~~l~i~g~ 237 (302)
+.+.. +.+.+++++|||++++..+||++++|..+|+
T Consensus 170 l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~l~~p~~ 206 (207)
T 1znw_A 170 RIELAAQGDFDKVVVNRRLESACAELVSLLVGTAPGS 206 (207)
T ss_dssp HHHHHGGGGSSEEEECSSHHHHHHHHHHHHC------
T ss_pred HHHHhhhccCcEEEECCCHHHHHHHHHHHHHhccCCC
Confidence 66553 4578999999999999999999999875554
No 76
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.73 E-value=8e-19 Score=152.34 Aligned_cols=156 Identities=13% Similarity=0.077 Sum_probs=89.9
Q ss_pred HHHhCCEEEEEccCCCCccchhhhhh--hcccccCCCEEEeecCchhhhHHHHHHHhh---hh----hccccccceeeee
Q psy2071 73 LLAQNQCIVLVGETGSGKTTQIPQWC--VEYSKSVGAKAVACTQPRRVAAMSVAQRVS---EE----MDCQLGQEVGYSI 143 (302)
Q Consensus 73 ~i~~g~i~~liG~nGsGKSTll~~i~--g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~---~~----~~~~~~~~v~~~~ 143 (302)
-|++|++++|+||||||||||+++++ |+..+..|.+.+.+...... .......+. +. ....+.+......
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 104 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARD-LRREMASFGWDFEKYEKEGKIAIVDGVSSVV 104 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHH-HHHHHHTTTCCHHHHHHTTSEEEEC------
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCHHH-HHHHHHHcCCChHHHhhcCCEEEEEcccccc
Confidence 67999999999999999999999999 65466666666666543221 111111111 10 0011111111100
Q ss_pred eecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchH-----HHH-HHHHHHHHHcCCCcEEEEEEec
Q psy2071 144 RFEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATD-----ILM-GVLKEVIKQRADLKLVIMSATL 217 (302)
Q Consensus 144 ~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD-----~~~-~~l~~ll~~~~~~~~~ii~~th 217 (302)
.... ............++.........-..+|++|+||| |++.+| ... ..+.++++..++.|+||+++||
T Consensus 105 ~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~lilDe---p~~~ld~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH 180 (251)
T 2ehv_A 105 GLPS-EEKFVLEDRFNVDNFLRYIYRVVKAINAKRLVIDS---IPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTE 180 (251)
T ss_dssp --------------CCHHHHHHHHHHHHHHTTCSEEEEEC---HHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEEC
T ss_pred cccc-ccceeccCcccHHHHHHHHHHHHHhhCCCEEEEcc---HHHHHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEEC
Confidence 0000 00000111223344333333333357999999999 999998 444 4477777766666899999999
Q ss_pred CHHHH---------Hhhc-cCCCeee
Q psy2071 218 DAGKF---------QQYF-DNAPLMN 233 (302)
Q Consensus 218 d~~~~---------~~~~-d~~~~l~ 233 (302)
+++.+ ..+| |++++|+
T Consensus 181 ~~~~~~~~~~~~~i~~~~aD~vi~l~ 206 (251)
T 2ehv_A 181 APDPQHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp CC----CCSSSSSCGGGGCSEEEEEE
T ss_pred CCCCCcccccccChhhEeeeEEEEEe
Confidence 99998 6888 9999997
No 77
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.71 E-value=1.7e-17 Score=151.22 Aligned_cols=79 Identities=16% Similarity=0.189 Sum_probs=67.4
Q ss_pred cccccccCHHHHH------HHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHh
Q psy2071 152 KTVLKYMTDGMLL------REGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQ 224 (302)
Q Consensus 152 ~~~~~~lS~G~~q------r~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~ 224 (302)
+..+..||+||+| |+++|++++.+|++||||| |++++|+.. ..+.+++......+.+|+++|||.+ +..
T Consensus 243 ~~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDE---p~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~-~~~ 318 (339)
T 3qkt_A 243 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDE---PTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE-LKD 318 (339)
T ss_dssp EECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEEC---CCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGG-GGG
T ss_pred cCChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEEC---CCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHH-HHH
Confidence 4567889999999 6788899999999999999 999999887 7778888776555779999999954 678
Q ss_pred hccCCCeeee
Q psy2071 225 YFDNAPLMNV 234 (302)
Q Consensus 225 ~~d~~~~l~i 234 (302)
+||++++|..
T Consensus 319 ~~d~~~~l~~ 328 (339)
T 3qkt_A 319 AADHVIRISL 328 (339)
T ss_dssp GCSEEEEEEE
T ss_pred hCCEEEEEEe
Confidence 9999999983
No 78
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.71 E-value=1.6e-18 Score=155.44 Aligned_cols=157 Identities=14% Similarity=0.124 Sum_probs=102.9
Q ss_pred HHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHH---------Hhhhhh-----cccc
Q psy2071 70 FMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQ---------RVSEEM-----DCQL 135 (302)
Q Consensus 70 i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~---------~~~~~~-----~~~~ 135 (302)
+++.+++|++++|+|||||||||+++.|+|++.|+.|++.+.+.+..+.++..... .+.+.. ..++
T Consensus 93 l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~~v 172 (302)
T 3b9q_A 93 LQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVL 172 (302)
T ss_dssp CCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHHHHH
T ss_pred cccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHHHHH
Confidence 45567899999999999999999999999999999999999998765543211110 011110 1112
Q ss_pred ccceeee---------ee-ecCCCCccccccccCHHHHHHHhccccCCCCCc--EEEEcCCCCCCcchHHHHHHHHHHHH
Q psy2071 136 GQEVGYS---------IR-FEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQ--VILLDEAHERTLATDILMGVLKEVIK 203 (302)
Q Consensus 136 ~~~v~~~---------~~-~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~--lliLDE~~~p~~~lD~~~~~l~~ll~ 203 (302)
.+++.+. +. .......+..+..|| +||+++|++++.+|+ +|+|| |++++|+... +.++.+
T Consensus 173 ~e~l~~~~~~~~d~~lldt~gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD----ptsglD~~~~-~~~~~~ 244 (302)
T 3b9q_A 173 SKAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD----GNTGLNMLPQ-AREFNE 244 (302)
T ss_dssp HHHHHHHHHTTCSEEEECCCCCSSCCHHHHHHHH---HHHHHHHTTSTTCCSEEEEEEE----GGGGGGGHHH-HHHHHH
T ss_pred HHHHHHHHHcCCcchHHhcCCCCcchhHHHHHHH---HHHHHHHHhhccCCCeeEEEEe----CCCCcCHHHH-HHHHHH
Confidence 2222211 11 011112234556688 899999999999999 99999 6999997653 233221
Q ss_pred HcCCCcEEEEEEec---------CHHHHHhhccCCCeeeecCcC
Q psy2071 204 QRADLKLVIMSATL---------DAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 204 ~~~~~~~~ii~~th---------d~~~~~~~~d~~~~l~i~g~~ 238 (302)
..+.+++++|| .++.+..+...+.++. .|+.
T Consensus 245 ---~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~-~Ge~ 284 (302)
T 3b9q_A 245 ---VVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIG-VGEA 284 (302)
T ss_dssp ---HTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEE-CSSS
T ss_pred ---hcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEe-CCCC
Confidence 24788999999 4445555555666665 5543
No 79
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.71 E-value=3.8e-20 Score=158.58 Aligned_cols=158 Identities=14% Similarity=0.047 Sum_probs=88.5
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCch----------hhhHHHHHHHhhhhh----
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPR----------RVAAMSVAQRVSEEM---- 131 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~----------~~~~~~~~~~~~~~~---- 131 (302)
.++++++.|++|++++|+||||||||||+++|+|++ | |.+.+ +.... .++...+........
T Consensus 12 ~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 87 (218)
T 1z6g_A 12 SGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKNE 87 (218)
T ss_dssp ----------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHHHTT
T ss_pred cccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhhhcc
Confidence 378999999999999999999999999999999988 5 88887 54321 111111111111000
Q ss_pred ----ccccccceeeeeeecCCC----Ccc--ccccccCHHHHHHHhc-----cccCCCCCcEEEEcCCCCCCcchHHHH-
Q psy2071 132 ----DCQLGQEVGYSIRFEDCS----SPK--TVLKYMTDGMLLREGM-----SDPMLENYQVILLDEAHERTLATDILM- 195 (302)
Q Consensus 132 ----~~~~~~~v~~~~~~~~~~----~~~--~~~~~lS~G~~qr~~l-----a~al~~~p~lliLDE~~~p~~~lD~~~- 195 (302)
..++..+ .|........ ... -.-..+||||+||+++ +++++..|++++||| |++++|...
T Consensus 88 ~~l~~~~~~~~-~~g~~~~~i~~~l~~~~~~il~~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde---~~~~~d~~~~ 163 (218)
T 1z6g_A 88 DFLEYDNYANN-FYGTLKSEYDKAKEQNKICLFEMNINGVKQLKKSTHIKNALYIFIKPPSTDVLLS---RLLTRNTENQ 163 (218)
T ss_dssp CEEEEEEETTE-EEEEEHHHHHHHHHTTCEEEEEECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHH---HHHHTCCCCH
T ss_pred chhhhhhcccc-cCCCcHHHHHHHHhCCCcEEEEecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHH---HHHhcCCCCH
Confidence 0001111 1111000000 000 0013479999999999 899999999999999 888888432
Q ss_pred HHHHHHHHHc-CC------CcEEEEEEecCHHHHHhhccCCCe
Q psy2071 196 GVLKEVIKQR-AD------LKLVIMSATLDAGKFQQYFDNAPL 231 (302)
Q Consensus 196 ~~l~~ll~~~-~~------~~~~ii~~thd~~~~~~~~d~~~~ 231 (302)
..+.+.+... .+ .....++++||.+++...+++++.
T Consensus 164 ~~i~~~l~~~~~~~~~~h~~~~d~iiv~~~~~ea~~~~~~ii~ 206 (218)
T 1z6g_A 164 EQIQKRMEQLNIELHEANLLNFNLSIINDDLTLTYQQLKNYLL 206 (218)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCCSEEEECSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcccCCCEEEECCCHHHHHHHHHHHHH
Confidence 2333322211 11 245567789999999888876643
No 80
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.71 E-value=4.4e-18 Score=145.86 Aligned_cols=165 Identities=13% Similarity=0.090 Sum_probs=99.9
Q ss_pred HHHHHHH-HHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhhccccccceeeeee
Q psy2071 66 YRTEFMT-LLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIR 144 (302)
Q Consensus 66 ~~~~i~~-~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 144 (302)
.++++.. -+++|++++|+||||||||||++++++...+..|.+.+.+.+........................+...-.
T Consensus 11 ~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (235)
T 2w0m_A 11 DFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEESRDSIIRQAKQFNWDFEEYIEKKLIIIDA 90 (235)
T ss_dssp HHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSSCHHHHHHHHHHTTCCCGGGBTTTEEEEEC
T ss_pred HHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcccCHHHHHHHHHHhcchHHHHhhCCEEEEec
Confidence 4566665 688999999999999999999999999888888888887765422111111111111000000001110000
Q ss_pred ecCCCCccccccccCHHHHHHHhccccCCCCCc--EEEEcCCCCCCcch--HHHH-HHHHHHHHH-cCCCcEEEEEEecC
Q psy2071 145 FEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQ--VILLDEAHERTLAT--DILM-GVLKEVIKQ-RADLKLVIMSATLD 218 (302)
Q Consensus 145 ~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~--lliLDE~~~p~~~l--D~~~-~~l~~ll~~-~~~~~~~ii~~thd 218 (302)
..............|.+++++...+.+...+|+ +||+|| |+..+ |+.. ..+.+.+.. .++.+++++++||+
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe---~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~ 167 (235)
T 2w0m_A 91 LMKEKEDQWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDS---VSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQY 167 (235)
T ss_dssp CC----CTTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEET---GGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-
T ss_pred cccccCceeeecCCCHHHHHHHHHHHHHhhCCCceEEEEEC---chHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEecc
Confidence 000000011112348888887777666667999 999999 88665 6432 333333332 23458999999999
Q ss_pred H--------HHHHhhccCCCeee
Q psy2071 219 A--------GKFQQYFDNAPLMN 233 (302)
Q Consensus 219 ~--------~~~~~~~d~~~~l~ 233 (302)
. ..+..+||++++|+
T Consensus 168 ~~~~~~~~~~~~~~~~d~vi~l~ 190 (235)
T 2w0m_A 168 AITTSQAFGFGVEHVADGIIRFR 190 (235)
T ss_dssp ----------CHHHHCSEEEEEE
T ss_pred CcccccccccchheeeeEEEEEE
Confidence 9 55899999999998
No 81
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.70 E-value=4.7e-19 Score=156.50 Aligned_cols=131 Identities=12% Similarity=0.084 Sum_probs=74.0
Q ss_pred EEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhH----HHHHHHhhhhhccccccceeeeeeecCCC-----
Q psy2071 79 CIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAA----MSVAQRVSEEMDCQLGQEVGYSIRFEDCS----- 149 (302)
Q Consensus 79 i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~----- 149 (302)
.++|+||||||||||+++|+|+..|++|.+.+.|........ ..+.+........++.+++++........
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~~i 83 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWEPI 83 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHHHH
Confidence 489999999999999999999999999999988865321110 01111111223456777777764332211
Q ss_pred -------CccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHH
Q psy2071 150 -------SPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAG 220 (302)
Q Consensus 150 -------~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~ 220 (302)
..+.....||+||+||+++||+++. +++||| |+.++|+.- ..++.+ .+. ++++++.|..+
T Consensus 84 ~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~---llllde---p~~gL~~lD~~~l~~L----~~~-~~vI~Vi~K~D 151 (270)
T 3sop_A 84 EKYINEQYEKFLKEEVNIARKKRIPDTRVHCC---LYFISP---TGHSLRPLDLEFMKHL----SKV-VNIIPVIAKAD 151 (270)
T ss_dssp HHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEE---EEEECC---CSSSCCHHHHHHHHHH----HTT-SEEEEEETTGG
T ss_pred HHHHHHHHHhhhHHhcCcccchhhhhheeeee---eEEEec---CCCcCCHHHHHHHHHH----Hhc-CcEEEEEeccc
Confidence 0122345699999999999999886 999999 888888765 333333 222 45555555443
No 82
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.70 E-value=4.1e-18 Score=149.79 Aligned_cols=130 Identities=14% Similarity=0.103 Sum_probs=90.8
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhccccc-CCCEEEeecCchhhhHHHHHHHhhhhhccccccceeeeee
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKS-VGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIR 144 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~-~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 144 (302)
++++++ +++|++++|+|||||||||++++++|++.|+ +|.+.+.+.+.... .+ ....+..+
T Consensus 16 vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~---------~~-------~~~~~v~q 77 (261)
T 2eyu_A 16 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYV---------FK-------HKKSIVNQ 77 (261)
T ss_dssp HHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSC---------CC-------CSSSEEEE
T ss_pred HHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceee---------cC-------CcceeeeH
Confidence 577777 8999999999999999999999999999998 89999887653210 00 00111111
Q ss_pred ecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEEEecCHHHHHh
Q psy2071 145 FEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILMGVLKEVIKQRADLKLVIMSATLDAGKFQQ 224 (302)
Q Consensus 145 ~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~~~l~~ll~~~~~~~~~ii~~thd~~~~~~ 224 (302)
... ..+. ...|++++++|..+|++||+|| |+ |+.. +..+++.. +.|.+++++||+.+ +..
T Consensus 78 ~~~--gl~~--------~~l~~~la~aL~~~p~illlDE---p~---D~~~--~~~~l~~~-~~g~~vl~t~H~~~-~~~ 137 (261)
T 2eyu_A 78 REV--GEDT--------KSFADALRAALREDPDVIFVGE---MR---DLET--VETALRAA-ETGHLVFGTLHTNT-AID 137 (261)
T ss_dssp EEB--TTTB--------SCHHHHHHHHHHHCCSEEEESC---CC---SHHH--HHHHHHHH-HTTCEEEEEECCSS-HHH
T ss_pred HHh--CCCH--------HHHHHHHHHHHhhCCCEEEeCC---CC---CHHH--HHHHHHHH-ccCCEEEEEeCcch-HHH
Confidence 000 0000 1228999999999999999999 88 5443 11222222 24789999999977 678
Q ss_pred hccCCCeee
Q psy2071 225 YFDNAPLMN 233 (302)
Q Consensus 225 ~~d~~~~l~ 233 (302)
+||++++|.
T Consensus 138 ~~dri~~l~ 146 (261)
T 2eyu_A 138 TIHRIVDIF 146 (261)
T ss_dssp HHHHHHHTS
T ss_pred HHHHHhhhc
Confidence 889887664
No 83
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.70 E-value=1.2e-17 Score=149.21 Aligned_cols=167 Identities=13% Similarity=0.074 Sum_probs=99.5
Q ss_pred hHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCC-CEEEeecCchhhhHH-HHHHHhhhhhccccc-----
Q psy2071 64 FEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVG-AKAVACTQPRRVAAM-SVAQRVSEEMDCQLG----- 136 (302)
Q Consensus 64 ~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G-~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~----- 136 (302)
+..+++++..+++|++++|+|+||||||||+++++|...+..| .+.+.+......... ....... .......
T Consensus 22 ~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~~~~~~~~r~~~~~~-~~~~~~~~~l~~ 100 (296)
T 1cr0_A 22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEESVEETAEDLIGLHN-RVRLRQSDSLKR 100 (296)
T ss_dssp CTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSSCHHHHHHHHHHHHT-TCCGGGCHHHHH
T ss_pred HHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcCCHHHHHHHHHHHHc-CCChhhcccccc
Confidence 4458899999999999999999999999999999999999888 776655432111100 0000000 0000000
Q ss_pred ---------cceeeeeeecCCCCccccccccCHHH-HHHHhccccCCCCCcEEEEcCCCCCCc---c---hHH-HH-HHH
Q psy2071 137 ---------QEVGYSIRFEDCSSPKTVLKYMTDGM-LLREGMSDPMLENYQVILLDEAHERTL---A---TDI-LM-GVL 198 (302)
Q Consensus 137 ---------~~v~~~~~~~~~~~~~~~~~~lS~G~-~qr~~la~al~~~p~lliLDE~~~p~~---~---lD~-~~-~~l 198 (302)
..+...+..... ........+|.++ ++++. ++++..+|++||+|| |+. + +|. .. ..+
T Consensus 101 ~~~~~~~~~~~~~~~l~~~~l-~i~~~~~~~~~~~l~~~~~-a~~~~~~p~llilDe---pt~~~~~~~~~d~~~~~~~i 175 (296)
T 1cr0_A 101 EIIENGKFDQWFDELFGNDTF-HLYDSFAEAETDRLLAKLA-YMRSGLGCDVIILDH---ISIVVSASGESDERKMIDNL 175 (296)
T ss_dssp HHHHHTHHHHHHHHHHSSSCE-EEECCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEE---EC-----------CHHHHHH
T ss_pred CCCCHHHHHHHHHHHhccCCE-EEECCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcC---ccccCCCCCCCCHHHHHHHH
Confidence 000000000000 0001113467777 45555 888999999999999 877 3 343 22 334
Q ss_pred HHHHHHc-CCCcEEEEEEecCH--H--------------------HHHhhccCCCeeeecCc
Q psy2071 199 KEVIKQR-ADLKLVIMSATLDA--G--------------------KFQQYFDNAPLMNVPGR 237 (302)
Q Consensus 199 ~~ll~~~-~~~~~~ii~~thd~--~--------------------~~~~~~d~~~~l~i~g~ 237 (302)
.+.++.. ++.+++||++||+. + .+.++||++++|+ .|+
T Consensus 176 ~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~-~~~ 236 (296)
T 1cr0_A 176 MTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALE-RNQ 236 (296)
T ss_dssp HHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEE-EC-
T ss_pred HHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEe-cCc
Confidence 4444443 33489999999994 5 7889999999998 443
No 84
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.69 E-value=6.2e-19 Score=157.71 Aligned_cols=131 Identities=8% Similarity=0.041 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhhcccccc-ceeeee
Q psy2071 65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQ-EVGYSI 143 (302)
Q Consensus 65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~ 143 (302)
.+++++++.|++|++++|+||||||||||+++|+|++ +|.|...+.+... .+..++.+ ++.+..
T Consensus 114 ~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I~~~v~q~~~------------lf~~ti~~~ni~~~~ 178 (305)
T 2v9p_A 114 NALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSVLSFANHKSH------------FWLASLADTRAALVD 178 (305)
T ss_dssp HHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEEECGGGTTSG------------GGGGGGTTCSCEEEE
T ss_pred hhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceEEEEecCccc------------cccccHHHHhhccCc
Confidence 4689999999999999999999999999999999998 7888654433211 11123333 454432
Q ss_pred eecC---------CCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEE
Q psy2071 144 RFED---------CSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVIKQRADLKLVIM 213 (302)
Q Consensus 144 ~~~~---------~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii 213 (302)
.... .... -....|||||||| |||++.+|++|| |+++|+.. ..+..
T Consensus 179 ~~~~~~~~~i~~~L~~g-ldg~~LSgGqkQR---ARAll~~p~iLl-------Ts~LD~~~~~~i~~------------- 234 (305)
T 2v9p_A 179 DATHACWRYFDTYLRNA-LDGYPVSIDRKHK---AAVQIKAPPLLV-------TSNIDVQAEDRYLY------------- 234 (305)
T ss_dssp EECHHHHHHHHHTTTGG-GGTCCEECCCSSC---CCCEECCCCEEE-------EESSCSTTCGGGGG-------------
T ss_pred cccHHHHHHHHHHhHcc-CCccCcCHHHHHH---HHHHhCCCCEEE-------ECCCCHHHHHHHHH-------------
Confidence 1100 0000 0145799999999 999999999999 88888765 33321
Q ss_pred EEecCHHHHHhhccCCCeeeecCcC
Q psy2071 214 SATLDAGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 214 ~~thd~~~~~~~~d~~~~l~i~g~~ 238 (302)
.||++..+ .+||++ +|+ .|+.
T Consensus 235 -ltH~~~~~-~~aD~i-vl~-~G~i 255 (305)
T 2v9p_A 235 -LHSRVQTF-RFEQPC-TDE-SGEQ 255 (305)
T ss_dssp -GTTTEEEE-ECCCCC-CCC----C
T ss_pred -HhCCHHHH-HhCCEE-EEe-CCEE
Confidence 18887754 689999 998 5653
No 85
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.69 E-value=2.5e-18 Score=165.56 Aligned_cols=148 Identities=13% Similarity=0.007 Sum_probs=106.3
Q ss_pred HHHHhCCEEEEEccCCCCccchhhhhhhcccccCCC--EEEeecCchhhhHHHHHHHhhhhhccccccceeeeeeecCCC
Q psy2071 72 TLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGA--KAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRFEDCS 149 (302)
Q Consensus 72 ~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 149 (302)
..+.+|++++|+|+||||||||+++++|...+. |. +++...++.. .......+ .+....+.. ......
T Consensus 276 g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~~vi~~~~ee~~~-~l~~~~~~----~g~~~~~~~----~~g~~~ 345 (525)
T 1tf7_A 276 GGFFKDSIILATGATGTGKTLLVSRFVENACAN-KERAILFAYEESRA-QLLRNAYS----WGMDFEEME----RQNLLK 345 (525)
T ss_dssp SSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TCCEEEEESSSCHH-HHHHHHHT----TSCCHHHHH----HTTSEE
T ss_pred CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CCCEEEEEEeCCHH-HHHHHHHH----cCCCHHHHH----hCCCEE
Confidence 378999999999999999999999999998875 64 3555544321 11111111 111111100 000001
Q ss_pred CccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHH-----H-HHHHHHHHHcCCCcEEEEEEecCH----
Q psy2071 150 SPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDIL-----M-GVLKEVIKQRADLKLVIMSATLDA---- 219 (302)
Q Consensus 150 ~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~-----~-~~l~~ll~~~~~~~~~ii~~thd~---- 219 (302)
..+.....||+||+||+++|+++..+|++||+| |++++|.. . ..+.++++..++.|+|++++||+.
T Consensus 346 ~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD----p~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvilvsh~~~~~~ 421 (525)
T 1tf7_A 346 IVCAYPESAGLEDHLQIIKSEINDFKPARIAID----SLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMG 421 (525)
T ss_dssp ECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE----CHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSSC
T ss_pred EEEeccccCCHHHHHHHHHHHHHhhCCCEEEEc----ChHHHHhhCChHHHHHHHHHHHHHHHhCCCEEEEEECcccccC
Confidence 112345679999999999999999999999999 79999976 5 677778777666789999999998
Q ss_pred ------HHHHhhccCCCeee
Q psy2071 220 ------GKFQQYFDNAPLMN 233 (302)
Q Consensus 220 ------~~~~~~~d~~~~l~ 233 (302)
..+..+||++++|+
T Consensus 422 ~~~~~~~~l~~~~D~vi~L~ 441 (525)
T 1tf7_A 422 AHSITDSHISTITDTIILLQ 441 (525)
T ss_dssp CCSSCSSCCTTTCSEEEEEE
T ss_pred cccccCcccceeeeEEEEEE
Confidence 77888999999887
No 86
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.68 E-value=8.2e-18 Score=144.12 Aligned_cols=144 Identities=11% Similarity=0.054 Sum_probs=83.3
Q ss_pred HHHhCCEEEEEccCCCCccchhhhhhhcccc-------cCCCEEEeecCchh-hhHHHHHHHhhhhhccccccceeeeee
Q psy2071 73 LLAQNQCIVLVGETGSGKTTQIPQWCVEYSK-------SVGAKAVACTQPRR-VAAMSVAQRVSEEMDCQLGQEVGYSIR 144 (302)
Q Consensus 73 ~i~~g~i~~liG~nGsGKSTll~~i~g~~~~-------~~G~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~ 144 (302)
-|++|++++|+||||||||||+++|+|...+ ..|.+++.+..... .....+.+....... ++.+++.+...
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~ 99 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPD-EVLKHIYVARA 99 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTSCHH-HHHHTEEEEEC
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHHHHHHHHHcCCCHH-HHhhcEEEEec
Confidence 5789999999999999999999999996554 22256666654211 111222222221111 33444443221
Q ss_pred ecCCCCccccccccCHHHH-HHHhcccc-----C--CCCCcEEEEcCCCCCCcchHHH-------------H-HHHHHHH
Q psy2071 145 FEDCSSPKTVLKYMTDGML-LREGMSDP-----M--LENYQVILLDEAHERTLATDIL-------------M-GVLKEVI 202 (302)
Q Consensus 145 ~~~~~~~~~~~~~lS~G~~-qr~~la~a-----l--~~~p~lliLDE~~~p~~~lD~~-------------~-~~l~~ll 202 (302)
.+.+++ +.+..+.+ + ..+|++|++|| |+..+|+. . ..+..+.
T Consensus 100 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe---~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~ 163 (231)
T 4a74_A 100 -------------FNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDS---LTSHFRSEYIGRGALAERQQKLAKHLADLH 163 (231)
T ss_dssp -------------CSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEET---SSHHHHHHSCSTTHHHHHHHHHHHHHHHHH
T ss_pred -------------CChHHHHHHHHHHHHHHHHhcccCCceeEEEECC---hHHHhccccCCCcchhHHHHHHHHHHHHHH
Confidence 122222 11222222 2 56999999999 99998872 1 2233333
Q ss_pred HHcCCCcEEEEEEecC----HHHHHhhccCCCeee
Q psy2071 203 KQRADLKLVIMSATLD----AGKFQQYFDNAPLMN 233 (302)
Q Consensus 203 ~~~~~~~~~ii~~thd----~~~~~~~~d~~~~l~ 233 (302)
+..++.++|||++||+ ...+..+||++++|+
T Consensus 164 ~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~ 198 (231)
T 4a74_A 164 RLANLYDIAVFVTNQVQANGGHILAHSATLRVYLR 198 (231)
T ss_dssp HHHHHHTCEEEEEEECC---------CCSEEEEEE
T ss_pred HHHHHCCCeEEEEeecccCcchhhHhhceEEEEEE
Confidence 3333458999999994 445999999999998
No 87
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.68 E-value=1.2e-17 Score=160.87 Aligned_cols=164 Identities=11% Similarity=0.040 Sum_probs=102.4
Q ss_pred HHHHHHHH-HHHhCCEEEEEccCCCCccchhhh--hhhcccccCCCEEEeecCchhhhHHHHHHH---hhhhhccccccc
Q psy2071 65 EYRTEFMT-LLAQNQCIVLVGETGSGKTTQIPQ--WCVEYSKSVGAKAVACTQPRRVAAMSVAQR---VSEEMDCQLGQE 138 (302)
Q Consensus 65 ~~~~~i~~-~i~~g~i~~liG~nGsGKSTll~~--i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 138 (302)
..++++++ .|++|++++|+||||||||||+++ ++|+.+|+.|.+++.+.+... .....+.. +.+.... ..+
T Consensus 26 ~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~~-~~~~~~~~~g~~~q~~~~--~~~ 102 (525)
T 1tf7_A 26 EGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQ-DIIKNARSFGWDLAKLVD--EGK 102 (525)
T ss_dssp TTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHH-HHHHHHGGGTCCHHHHHH--TTS
T ss_pred hhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCHH-HHHHHHHHcCCChHHhhc--cCc
Confidence 46899999 999999999999999999999999 689999999999999876421 11111111 1111110 011
Q ss_pred eeeeeeecCCCCccccccccCHHHHHHHhccccC-CCCCcEEEEcC--CCCCCcchHHHH-HHHHHHHHHcCCCcEEEEE
Q psy2071 139 VGYSIRFEDCSSPKTVLKYMTDGMLLREGMSDPM-LENYQVILLDE--AHERTLATDILM-GVLKEVIKQRADLKLVIMS 214 (302)
Q Consensus 139 v~~~~~~~~~~~~~~~~~~lS~G~~qr~~la~al-~~~p~lliLDE--~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~ 214 (302)
+.+. ...........+..+.-+. +...+...| -.+|++|+||| +.+|..++|+.. ..+.++++..++.|+|+|+
T Consensus 103 l~~~-~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~g~~~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~ 180 (525)
T 1tf7_A 103 LFIL-DASPDPEGQEVVGGFDLSA-LIERINYAIQKYRARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVM 180 (525)
T ss_dssp EEEE-ECCCCSSCCSCCSSHHHHH-HHHHHHHHHHHHTCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred EEEE-ecCcccchhhhhcccCHHH-HHHHHHHHHHHcCCCEEEECCHHHHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEE
Confidence 2111 1100000011111111111 111222222 24689999999 233334568766 6778888766666899999
Q ss_pred EecCHHHH---------HhhccCCCeee
Q psy2071 215 ATLDAGKF---------QQYFDNAPLMN 233 (302)
Q Consensus 215 ~thd~~~~---------~~~~d~~~~l~ 233 (302)
+||+++++ ..+||++++|+
T Consensus 181 itH~~~~~~~~~~~~i~~~laD~vi~L~ 208 (525)
T 1tf7_A 181 TTERIEEYGPIARYGVEEFVSDNVVILR 208 (525)
T ss_dssp EEECSSSSSCSSTTSCHHHHCSEEEEEE
T ss_pred EecCCCCccccccccceeeeeeEEEEEE
Confidence 99999884 55699999997
No 88
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.66 E-value=1e-17 Score=153.20 Aligned_cols=156 Identities=14% Similarity=0.127 Sum_probs=101.6
Q ss_pred HHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHH------Hh---hhhhc-----ccc
Q psy2071 70 FMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQ------RV---SEEMD-----CQL 135 (302)
Q Consensus 70 i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~------~~---~~~~~-----~~~ 135 (302)
+++.+++|++++|+|||||||||+++.|+|++.|+.|++.+.+.+..+.++..+.. .+ .+... .++
T Consensus 150 l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~tv 229 (359)
T 2og2_A 150 LQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVL 229 (359)
T ss_dssp CCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHHHH
T ss_pred cceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhhhH
Confidence 34456789999999999999999999999999999999999998876543321111 11 11111 111
Q ss_pred ccceeee---------ee-ecCCCCccccccccCHHHHHHHhccccCCCCCc--EEEEcCCCCCCcchHHHHHHHHHHHH
Q psy2071 136 GQEVGYS---------IR-FEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQ--VILLDEAHERTLATDILMGVLKEVIK 203 (302)
Q Consensus 136 ~~~v~~~---------~~-~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~--lliLDE~~~p~~~lD~~~~~l~~ll~ 203 (302)
.+++.+. +. .......+..+..|| +||+++|++++.+|+ +|+|| |++++|.... +..+.+
T Consensus 230 ~e~l~~~~~~~~d~~lldt~Gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD----pttglD~~~~-~~~~~~ 301 (359)
T 2og2_A 230 SKAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD----GNTGLNMLPQ-AREFNE 301 (359)
T ss_dssp HHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHH---HHHHHHHHHSTTCCSEEEEEEE----GGGGGGGHHH-HHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHhcCCChhhhhHHHHHH---HHHHHHHHHHhcCCCceEEEEc----CCCCCCHHHH-HHHHHH
Confidence 2222111 11 111112234556688 899999999999999 99999 6999997653 223221
Q ss_pred HcCCCcEEEEEEecC---------HHHHHhhccCCCeeeecCc
Q psy2071 204 QRADLKLVIMSATLD---------AGKFQQYFDNAPLMNVPGR 237 (302)
Q Consensus 204 ~~~~~~~~ii~~thd---------~~~~~~~~d~~~~l~i~g~ 237 (302)
..+++++++||. +..+..+...+.++. .|.
T Consensus 302 ---~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig-~Ge 340 (359)
T 2og2_A 302 ---VVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIG-VGE 340 (359)
T ss_dssp ---HTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEE-CSS
T ss_pred ---hcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEe-CCC
Confidence 247899999993 444555555555555 444
No 89
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.65 E-value=2.8e-17 Score=137.52 Aligned_cols=131 Identities=16% Similarity=0.163 Sum_probs=82.6
Q ss_pred CCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhhccccccceeeeee-----------e
Q psy2071 77 NQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIR-----------F 145 (302)
Q Consensus 77 g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-----------~ 145 (302)
|++++|+||||||||||+++++|+++ ++| +.+.|....... .....++|..+ +
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~~--------------~~~~~ig~~~~~~~g~~~~l~~~ 64 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEVR--------------QGGRRIGFDVVTLSGTRGPLSRV 64 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEEE--------------TTSSEEEEEEEETTSCEEEEEEC
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchhH--------------hhhceEEEEEEecccceehhhcc
Confidence 78999999999999999999999999 889 877765432110 00112222221 1
Q ss_pred cCCC-------CccccccccCHHHHHHH-hccc---cCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEE-
Q psy2071 146 EDCS-------SPKTVLKYMTDGMLLRE-GMSD---PMLENYQVILLDEAHERTLATDILM-GVLKEVIKQRADLKLVI- 212 (302)
Q Consensus 146 ~~~~-------~~~~~~~~lS~G~~qr~-~la~---al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~i- 212 (302)
.... ...+....+|+|+++++ ++++ |++.+|++|||||+ -|+...|... ..+.+++... .++++
T Consensus 65 ~~~~~~~~~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~-g~~~~~~~~~~~~l~~~l~~~--~~~ilg 141 (189)
T 2i3b_A 65 GLEPPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEI-GKMELFSQLFIQAVRQTLSTP--GTIILG 141 (189)
T ss_dssp CCCCCSSSCCEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCC-STTTTTCSHHHHHHHHHHHCS--SCCEEE
T ss_pred cccCCccccccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCC-CccccccHHHHHHHHHHHhCC--CcEEEE
Confidence 1000 01223345899999887 4455 68999999999996 3666677544 7777777642 12232
Q ss_pred -EEEecCH--HHHHhhc
Q psy2071 213 -MSATLDA--GKFQQYF 226 (302)
Q Consensus 213 -i~~thd~--~~~~~~~ 226 (302)
+.++|+. .++.+++
T Consensus 142 ti~vsh~~~~~~vd~i~ 158 (189)
T 2i3b_A 142 TIPVPKGKPLALVEEIR 158 (189)
T ss_dssp ECCCCCSSCCTTHHHHH
T ss_pred EeecCCCCchHHHHHHe
Confidence 3445976 4444443
No 90
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.63 E-value=3.5e-17 Score=165.77 Aligned_cols=141 Identities=18% Similarity=0.133 Sum_probs=89.2
Q ss_pred HHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcc-cccCCCEEEeecCchhhhHHHHHHHhhhhhccccccceeeeeee
Q psy2071 67 RTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEY-SKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRF 145 (302)
Q Consensus 67 ~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~-~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 145 (302)
.+++++.+++|++++|+|||||||||+++++++.. .+..|.. + |.... .....+.+ ..++
T Consensus 652 ~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~-v----pa~~~------------~~~~~d~i--~~~i 712 (934)
T 3thx_A 652 PNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCF-V----PCESA------------EVSIVDCI--LARV 712 (934)
T ss_dssp CEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCC-B----SEEEE------------EEECCSEE--EEEC
T ss_pred cccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCc-c----ccccc------------cchHHHHH--HHhc
Confidence 45677888899999999999999999999994321 1111200 0 00000 00000000 0111
Q ss_pred cCCCCccccccccCHHHHHHHhccccC--CCCCcEEEEcCCCCCCcchHHHH--HHHHHHHHHcC-CCcEEEEEEecCHH
Q psy2071 146 EDCSSPKTVLKYMTDGMLLREGMSDPM--LENYQVILLDEAHERTLATDILM--GVLKEVIKQRA-DLKLVIMSATLDAG 220 (302)
Q Consensus 146 ~~~~~~~~~~~~lS~G~~qr~~la~al--~~~p~lliLDE~~~p~~~lD~~~--~~l~~ll~~~~-~~~~~ii~~thd~~ 220 (302)
. ..+.....+|+|+.++..+++++ +.+|++||||| |+.|+|+.. .+...+++... +.|.+++++||+.+
T Consensus 713 g---~~d~l~~~lStf~~e~~~~a~il~~a~~~sLlLLDE---p~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~e 786 (934)
T 3thx_A 713 G---AGDSQLKGVSTFMAEMLETASILRSATKDSLIIIDE---LGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHE 786 (934)
T ss_dssp C------------CHHHHHHHHHHHHHHHCCTTCEEEEES---CSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGG
T ss_pred C---chhhHHHhHhhhHHHHHHHHHHHHhccCCcEEEEeC---CCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHH
Confidence 1 12334456788888888887777 99999999999 999999865 33466666554 35889999999966
Q ss_pred HHHhhccCCCeee
Q psy2071 221 KFQQYFDNAPLMN 233 (302)
Q Consensus 221 ~~~~~~d~~~~l~ 233 (302)
. ..+||+++.+.
T Consensus 787 l-~~lad~~~~v~ 798 (934)
T 3thx_A 787 L-TALANQIPTVN 798 (934)
T ss_dssp G-GGGGGTCTTEE
T ss_pred H-HHHhcccceeE
Confidence 4 57999998776
No 91
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.62 E-value=3.7e-17 Score=149.21 Aligned_cols=152 Identities=12% Similarity=0.071 Sum_probs=103.6
Q ss_pred hHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhhccccccceeeee
Q psy2071 64 FEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSI 143 (302)
Q Consensus 64 ~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 143 (302)
..+.+++ +.|.+|++++|+|+||||||||+++|+|+..|+.|.+.+.|...+.+... ....... .....+.+..
T Consensus 59 ~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~--i~~~~~~---~~~~~v~~~~ 132 (347)
T 2obl_A 59 VRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEF--LALLPQS---TLSKCVLVVT 132 (347)
T ss_dssp CHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHH--HTTSCHH---HHTTEEEEEE
T ss_pred CEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHH--HHhhhhh---hhhceEEEEE
Confidence 4578999 99999999999999999999999999999999999888877654322110 0000000 0000111111
Q ss_pred eecC--------------------CCCc-----cccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HH
Q psy2071 144 RFED--------------------CSSP-----KTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GV 197 (302)
Q Consensus 144 ~~~~--------------------~~~~-----~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~ 197 (302)
.... .... -..+..||+|| |++++| +.+|++ +.++|+.. ..
T Consensus 133 ~~~~~~~~r~~~~~~~~~~ae~~~~~~~~vl~~ld~~~~lS~g~-r~v~la---l~~p~~---------t~Gldp~~~~~ 199 (347)
T 2obl_A 133 TSDRPALERMKAAFTATTIAEYFRDQGKNVLLMMDSVTRYARAA-RDVGLA---SGEPDV---------RGGFPPSVFSS 199 (347)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHHHHHHHH-HHHHHH---TTCCCC---------BTTBCHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhccccHHHHHhhHHHHHHHH-HHHHHH---cCCCCc---------ccCCCHHHHHH
Confidence 0000 0000 02356789999 899999 456544 68999887 78
Q ss_pred HHHHHHHcC--CCcE-----EEEEEecCHHHHHhhccCCCeeeecCc
Q psy2071 198 LKEVIKQRA--DLKL-----VIMSATLDAGKFQQYFDNAPLMNVPGR 237 (302)
Q Consensus 198 l~~ll~~~~--~~~~-----~ii~~thd~~~~~~~~d~~~~l~i~g~ 237 (302)
+.+++++.. +.|. ||+++|||++ ..+||++.++. .|+
T Consensus 200 l~~ller~~~~~~GsiT~~~tVl~~thdl~--~~i~d~v~~i~-dG~ 243 (347)
T 2obl_A 200 LPKLLERAGPAPKGSITAIYTVLLESDNVN--DPIGDEVRSIL-DGH 243 (347)
T ss_dssp HHHHHTTCEECSSSEEEEEEEEECCSSCCC--CHHHHHHHHHC-SEE
T ss_pred HHHHHHHHhCCCCCCeeeEEEEEEeCCCCC--ChhhhheEEee-CcE
Confidence 888888765 4577 8999999998 67899988886 554
No 92
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.62 E-value=4.7e-17 Score=164.37 Aligned_cols=140 Identities=13% Similarity=0.098 Sum_probs=89.8
Q ss_pred HHHHHHHHHhCCEEEEEccCCCCccchhhhhhhccccc-CCCEEEeecCchhhhHHHHHHHhhhhhccccccceeeeeee
Q psy2071 67 RTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKS-VGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRF 145 (302)
Q Consensus 67 ~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~-~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 145 (302)
.+++++.+++|++++|+|||||||||+|++++++.... .|.. + +.. .......+.+ ..++
T Consensus 663 ~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~~-v----pa~------------~~~i~~~d~i--~~~i 723 (918)
T 3thx_B 663 PNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMAQIGSY-V----PAE------------EATIGIVDGI--FTRM 723 (918)
T ss_dssp CEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHHHHTCC-B----SSS------------EEEEECCSEE--EEEC
T ss_pred cccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHhhcCcc-c----cch------------hhhhhHHHHH--HHhC
Confidence 45778888999999999999999999999987643211 1110 0 000 0000000111 1111
Q ss_pred cCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH--HHHHHHHHHc-CCCcEEEEEEecCHHHH
Q psy2071 146 EDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM--GVLKEVIKQR-ADLKLVIMSATLDAGKF 222 (302)
Q Consensus 146 ~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~--~~l~~ll~~~-~~~~~~ii~~thd~~~~ 222 (302)
............+|+||++++.++++ +.+|++||||| |+.|+|+.. .+...+++.. .+.|.+++++||+.+.+
T Consensus 724 g~~d~l~~~~stfs~em~~~~~il~~-a~~p~LlLLDE---P~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~ 799 (918)
T 3thx_B 724 GAADNIYKGRSTFMEELTDTAEIIRK-ATSQSLVILDE---LGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVC 799 (918)
T ss_dssp ----------CCHHHHHHHHHHHHHH-CCTTCEEEEES---TTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGGGG
T ss_pred ChHHHHHHhHHHhhHHHHHHHHHHHh-ccCCCEEEEeC---CCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHHH
Confidence 11122234456789999999999988 89999999999 999999875 3344666654 34588999999998755
Q ss_pred HhhccCCC
Q psy2071 223 QQYFDNAP 230 (302)
Q Consensus 223 ~~~~d~~~ 230 (302)
.++|+..
T Consensus 800 -~l~~~~~ 806 (918)
T 3thx_B 800 -ELEKNYS 806 (918)
T ss_dssp -GHHHHTT
T ss_pred -HHHhhcc
Confidence 5777653
No 93
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.62 E-value=2e-16 Score=162.02 Aligned_cols=143 Identities=15% Similarity=0.082 Sum_probs=96.7
Q ss_pred HHHHHHHHHh-------CCEEEEEccCCCCccchhhhhhhcccccC--CCEEEeecCchhhhHHHHHHHhhhhhcccccc
Q psy2071 67 RTEFMTLLAQ-------NQCIVLVGETGSGKTTQIPQWCVEYSKSV--GAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQ 137 (302)
Q Consensus 67 ~~~i~~~i~~-------g~i~~liG~nGsGKSTll~~i~g~~~~~~--G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (302)
.+++++.+++ |++++|+|||||||||+++++ |++.+.. |. .+-. .. ...++.+
T Consensus 772 ~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~~aqiG~-~Vpq-~~---------------~~l~v~d 833 (1022)
T 2o8b_B 772 PNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAVMAQMGC-YVPA-EV---------------CRLTPID 833 (1022)
T ss_dssp CEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHHHHTTTC-CEES-SE---------------EEECCCS
T ss_pred eeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHHHhheeE-Eecc-Cc---------------CCCCHHH
Confidence 4556666665 899999999999999999999 8876421 20 0100 00 0122233
Q ss_pred ceeeeeeecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH--HHHHHHHHHcCCC-cEEEEE
Q psy2071 138 EVGYSIRFEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM--GVLKEVIKQRADL-KLVIMS 214 (302)
Q Consensus 138 ~v~~~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~--~~l~~ll~~~~~~-~~~ii~ 214 (302)
++.. ++............++++|.+ ++++++++.+|++||||| |+.|+|+.. ..+..+++...+. |.++++
T Consensus 834 ~I~~--rig~~d~~~~~~stf~~em~~-~a~al~la~~~sLlLLDE---p~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~ 907 (1022)
T 2o8b_B 834 RVFT--RLGASDRIMSGESTFFVELSE-TASILMHATAHSLVLVDE---LGRGTATFDGTAIANAVVKELAETIKCRTLF 907 (1022)
T ss_dssp BEEE--ECC---------CHHHHHHHH-HHHHHHHCCTTCEEEEEC---TTTTSCHHHHHHHHHHHHHHHHHTSCCEEEE
T ss_pred HHHH--HcCCHHHHhhchhhhHHHHHH-HHHHHHhCCCCcEEEEEC---CCCCCChHHHHHHHHHHHHHHHhcCCCEEEE
Confidence 3322 111111112233456777664 899999999999999999 999999765 4567777765543 889999
Q ss_pred EecCHHHHHhhccCCCeee
Q psy2071 215 ATLDAGKFQQYFDNAPLMN 233 (302)
Q Consensus 215 ~thd~~~~~~~~d~~~~l~ 233 (302)
+||+.+.+..++|++.+++
T Consensus 908 ~TH~~el~~~~~d~~~v~~ 926 (1022)
T 2o8b_B 908 STHYHSLVEDYSQNVAVRL 926 (1022)
T ss_dssp ECCCHHHHHHTSSCSSEEE
T ss_pred EeCCHHHHHHhCCcceeec
Confidence 9999999999999998875
No 94
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.61 E-value=3.8e-17 Score=147.10 Aligned_cols=147 Identities=9% Similarity=-0.028 Sum_probs=85.7
Q ss_pred HHhCCEEEEEccCCCCccchhhhhhhcccccCC--CEEEeecCchhhhHHHHHHHhhhh--hccccc---cceeeee-ee
Q psy2071 74 LAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVG--AKAVACTQPRRVAAMSVAQRVSEE--MDCQLG---QEVGYSI-RF 145 (302)
Q Consensus 74 i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G--~~~i~~~~~~~~~~~~~~~~~~~~--~~~~~~---~~v~~~~-~~ 145 (302)
+++|++++|+||||||||||+++|+|++.|..| .+.+..++...... .....+... .+.... +.+...+ .+
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd~~~~~~-t~~e~~~~~~~~g~~~~~d~~~~~~~L~~l 165 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTDGFLYPN-AELQRRNLMHRKGFPESYNRRALMRFVTSV 165 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGGGGBCCH-HHHHHTTCTTCTTSGGGBCHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhccccCCCCeEEEEecCccCCcc-cHHHHHHHHHhcCCChHHHHHHHHHHHHHh
Confidence 788999999999999999999999999999877 34443333221111 111111100 000000 0000000 11
Q ss_pred cCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEEEecCHHHH-Hh
Q psy2071 146 EDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILMGVLKEVIKQRADLKLVIMSATLDAGKF-QQ 224 (302)
Q Consensus 146 ~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~~~l~~ll~~~~~~~~~ii~~thd~~~~-~~ 224 (302)
. ....+..+..||+||+||+++|++++.+|++||||| |+...|.....+ ......+ ++++|+.+.. ..
T Consensus 166 ~-~~~~~~~~~~lS~G~~qRv~~a~al~~~p~ilIlDe---p~~~~d~~~~~l------~~~~D~~-I~V~a~~~~~~~R 234 (312)
T 3aez_A 166 K-SGSDYACAPVYSHLHYDIIPGAEQVVRHPDILILEG---LNVLQTGPTLMV------SDLFDFS-LYVDARIEDIEQW 234 (312)
T ss_dssp H-TTCSCEEEEEEETTTTEEEEEEEEEECSCSEEEEEC---TTTTCCCSSCCG------GGGCSEE-EEEEECHHHHHHH
T ss_pred C-CCcccCCcccCChhhhhhhhhHHHhccCCCEEEECC---ccccCCcchHHH------HHhcCcE-EEEECCHHHHHHH
Confidence 1 111235567899999999999999999999999999 877765311011 1112444 4446666553 34
Q ss_pred hccCCCee
Q psy2071 225 YFDNAPLM 232 (302)
Q Consensus 225 ~~d~~~~l 232 (302)
+.+|...+
T Consensus 235 ~i~R~~~~ 242 (312)
T 3aez_A 235 YVSRFLAM 242 (312)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44554433
No 95
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.60 E-value=4.9e-16 Score=142.22 Aligned_cols=125 Identities=13% Similarity=0.098 Sum_probs=82.1
Q ss_pred HHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhhccccccceeeeeeecCCCCcc
Q psy2071 73 LLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRFEDCSSPK 152 (302)
Q Consensus 73 ~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 152 (302)
.+.+|++++|+|||||||||++++++|++.|+.|...+...++.... .....++..+....
T Consensus 119 ~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~---------------~~~~~~~v~q~~~~---- 179 (356)
T 3jvv_A 119 SDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFV---------------HESKKCLVNQREVH---- 179 (356)
T ss_dssp HHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSC---------------CCCSSSEEEEEEBT----
T ss_pred HhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhh---------------hhccccceeeeeec----
Confidence 56788899999999999999999999999988554444433332110 00011111111100
Q ss_pred ccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCe
Q psy2071 153 TVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPL 231 (302)
Q Consensus 153 ~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~ 231 (302)
...++... +|+++|..+|++||+|| |+ |... ..+.++ .+.|.++++++|+.+.+ ..+||++.
T Consensus 180 --~~~~~~~~----~La~aL~~~PdvillDE---p~---d~e~~~~~~~~----~~~G~~vl~t~H~~~~~-~~~dRli~ 242 (356)
T 3jvv_A 180 --RDTLGFSE----ALRSALREDPDIILVGE---MR---DLETIRLALTA----AETGHLVFGTLHTTSAA-KTIDRVVD 242 (356)
T ss_dssp --TTBSCHHH----HHHHHTTSCCSEEEESC---CC---SHHHHHHHHHH----HHTTCEEEEEESCSSHH-HHHHHHHH
T ss_pred --cccCCHHH----HHHHHhhhCcCEEecCC---CC---CHHHHHHHHHH----HhcCCEEEEEEccChHH-HHHHHHhh
Confidence 01122222 89999999999999999 87 4333 333333 23488999999999877 78999887
Q ss_pred ee
Q psy2071 232 MN 233 (302)
Q Consensus 232 l~ 233 (302)
|.
T Consensus 243 l~ 244 (356)
T 3jvv_A 243 VF 244 (356)
T ss_dssp TS
T ss_pred hc
Confidence 73
No 96
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.59 E-value=6.1e-17 Score=152.11 Aligned_cols=154 Identities=10% Similarity=0.008 Sum_probs=102.0
Q ss_pred hHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHH--------HHHHH---hhh---
Q psy2071 64 FEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAM--------SVAQR---VSE--- 129 (302)
Q Consensus 64 ~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~--------~~~~~---~~~--- 129 (302)
..+.+++ +.|.+|++++|+||||||||||+++|+|+..|+.|.+.+.|...+.+... ..... +++
T Consensus 145 ~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~~~~~l~r~i~~v~q~~~ 223 (438)
T 2dpy_A 145 VRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILGPDGRARSVVIAAPADV 223 (438)
T ss_dssp CHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTTHHHHHHTEEEEEECTTS
T ss_pred ceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhccccccCceEEEEECCCC
Confidence 4578999 99999999999999999999999999999999999998888742222110 00000 000
Q ss_pred --hhccccccceeeeeeecCCCC-----ccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHH
Q psy2071 130 --EMDCQLGQEVGYSIRFEDCSS-----PKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEV 201 (302)
Q Consensus 130 --~~~~~~~~~v~~~~~~~~~~~-----~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~l 201 (302)
....++.+++.+......... .-..+..+|+|| ||+++| +.+|++ +.++|+.. ..+.++
T Consensus 224 ~~~~~~~v~~~~~~~ae~~~~~~~~v~~~ld~l~~lS~g~-qrvslA---l~~p~~---------t~glD~~~~~~l~~l 290 (438)
T 2dpy_A 224 SPLLRMQGAAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQ-REIALA---IGEPPA---------TKGYPPSVFAKLPAL 290 (438)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECHHHHHHHH-HHHHHH---TTCCCC---------SSSCCTTHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhHHHHHHHH-HHHHHH---hCCCcc---------cccCCHHHHHHHHHH
Confidence 011112222111110000000 001245689999 999999 677765 78999776 778888
Q ss_pred HHHcCC----CcE-----EEEEEecCHHHHHhhccCCCeee
Q psy2071 202 IKQRAD----LKL-----VIMSATLDAGKFQQYFDNAPLMN 233 (302)
Q Consensus 202 l~~~~~----~~~-----~ii~~thd~~~~~~~~d~~~~l~ 233 (302)
+.+... .|. ||+++|||++ ..+||++.+|.
T Consensus 291 l~r~~~~~~~~GsiT~~~tVlv~tHdl~--~~iad~v~~l~ 329 (438)
T 2dpy_A 291 VERAGNGIHGGGSITAFYTVLTEGDDQQ--DPIADSARAIL 329 (438)
T ss_dssp HTTCSCCSTTSCEEEEEEEEECSSSCSC--CHHHHHHHHHS
T ss_pred HHHHHhccCCCCcccceeEEEEeCCCcc--chhhceEEEEe
Confidence 877654 264 8999999997 56777777665
No 97
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.57 E-value=1e-15 Score=122.89 Aligned_cols=79 Identities=14% Similarity=0.180 Sum_probs=68.9
Q ss_pred ccccccccCHHHHHHHhcc------ccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHH
Q psy2071 151 PKTVLKYMTDGMLLREGMS------DPMLENYQVILLDEAHERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQ 223 (302)
Q Consensus 151 ~~~~~~~lS~G~~qr~~la------~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~ 223 (302)
.++.+..|||||+||++|| ++|+.+|+++|||| ||+++|+.. ..+.+++....+.+.+|+++|||. .+.
T Consensus 51 ~~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDE---Pt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~-~~~ 126 (148)
T 1f2t_B 51 KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDE---PTPYLDEERRRKLITIMERYLKKIPQVILVSHDE-ELK 126 (148)
T ss_dssp EEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEES---CSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCG-GGG
T ss_pred ccCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEEC---CCccCCHHHHHHHHHHHHHHHccCCEEEEEEChH-HHH
Confidence 3566789999999999876 89999999999999 999999887 778888887655578999999998 577
Q ss_pred hhccCCCeee
Q psy2071 224 QYFDNAPLMN 233 (302)
Q Consensus 224 ~~~d~~~~l~ 233 (302)
.+||++++|+
T Consensus 127 ~~~d~ii~l~ 136 (148)
T 1f2t_B 127 DAADHVIRIS 136 (148)
T ss_dssp GGCSEEEEEE
T ss_pred HhCCEEEEEE
Confidence 8999999996
No 98
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.56 E-value=2e-15 Score=150.32 Aligned_cols=123 Identities=15% Similarity=0.102 Sum_probs=82.2
Q ss_pred CCEEEEEccCCCCccchhhhhhhccc-ccCCCEEEeecCchhhhHHHHHHHhhhhhccccccceeeeeee-cCCCCcccc
Q psy2071 77 NQCIVLVGETGSGKTTQIPQWCVEYS-KSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRF-EDCSSPKTV 154 (302)
Q Consensus 77 g~i~~liG~nGsGKSTll~~i~g~~~-~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~ 154 (302)
|++++|+|||||||||++++++|+.. +..|... +.. ...+++..+. ......+..
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~v-----pa~------------------~~~i~~v~~i~~~~~~~d~l 632 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALIALLAQVGSFV-----PAE------------------EAHLPLFDGIYTRIGASDDL 632 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCB-----SSS------------------EEEECCCSEEEEECCC----
T ss_pred CcEEEEECCCCCChHHHHHHHHhhhhhcccCcee-----ehh------------------ccceeeHHHhhccCCHHHHH
Confidence 99999999999999999999999864 5667531 100 0011111111 111112233
Q ss_pred ccccCHHHHHHHhccccC--CCCCcEEEEcCCCCCCcchHHHH--HHHHHHHHHcCCCcEEEEEEecCHHHHHhhc
Q psy2071 155 LKYMTDGMLLREGMSDPM--LENYQVILLDEAHERTLATDILM--GVLKEVIKQRADLKLVIMSATLDAGKFQQYF 226 (302)
Q Consensus 155 ~~~lS~G~~qr~~la~al--~~~p~lliLDE~~~p~~~lD~~~--~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~ 226 (302)
...+|+|+++++.+++++ +.+|+++||||++-.|+++|... ..+.+.+.. .|.+++++||+.+.. .++
T Consensus 633 ~~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~---~g~~vl~~TH~~~l~-~~~ 704 (765)
T 1ewq_A 633 AGGKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE---RRAYTLFATHYFELT-ALG 704 (765)
T ss_dssp --CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH---HTCEEEEECCCHHHH-TCC
T ss_pred HhcccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh---CCCEEEEEeCCHHHH-Hhh
Confidence 345899999999999999 99999999999211299999764 245555544 478999999998775 455
No 99
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.54 E-value=3.4e-15 Score=136.50 Aligned_cols=146 Identities=12% Similarity=0.123 Sum_probs=89.9
Q ss_pred HHHHHH-HHHHhCCEEEEEccCCCCccchhhhhhhcc--cccC----CC-EEEeecCchh-hhHHHHHHHhhhhhccccc
Q psy2071 66 YRTEFM-TLLAQNQCIVLVGETGSGKTTQIPQWCVEY--SKSV----GA-KAVACTQPRR-VAAMSVAQRVSEEMDCQLG 136 (302)
Q Consensus 66 ~~~~i~-~~i~~g~i~~liG~nGsGKSTll~~i~g~~--~~~~----G~-~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~ 136 (302)
.++.+. ..|++|++++|+||||||||||+.++++.. +|+. |. ++|.+..... .....+++...... .++.
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i~~i~q~~~~~~-~~v~ 197 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDP-DEVL 197 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHHHHHHHTTTCCH-HHHG
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHHHHHHHHcCCCH-HHHh
Confidence 355553 578899999999999999999999999987 6666 56 6777655311 11112222221111 1344
Q ss_pred cceeeeeeecCCCCccccccccCHHHHHHHhccccCC-------CCCcEEEEcCCCCCCcchHHH-------------H-
Q psy2071 137 QEVGYSIRFEDCSSPKTVLKYMTDGMLLREGMSDPML-------ENYQVILLDEAHERTLATDIL-------------M- 195 (302)
Q Consensus 137 ~~v~~~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~-------~~p~lliLDE~~~p~~~lD~~-------------~- 195 (302)
+++.+... .-+.++.+++.++++++ .+|++||+|| |++.+|+. .
T Consensus 198 ~ni~~~~~------------~~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs---~ta~ld~~~~~~~~~~~r~~~~~ 262 (349)
T 1pzn_A 198 KHIYVARA------------FNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDS---LTSHFRSEYIGRGALAERQQKLA 262 (349)
T ss_dssp GGEEEEEC------------CSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEET---SSTTHHHHCCSTTTHHHHHHHHH
T ss_pred hCEEEEec------------CChHHHHHHHHHHHHHHHHhccccCCCCEEEEeC---chHhhhhhhcccccHHHHHHHHH
Confidence 45443321 11467788888888877 7899999999 99999873 1
Q ss_pred HHHHHHHHHcCCCcEEEEEEecCHHHHHhhcc
Q psy2071 196 GVLKEVIKQRADLKLVIMSATLDAGKFQQYFD 227 (302)
Q Consensus 196 ~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d 227 (302)
..+..+....++.++++++++|.......+++
T Consensus 263 ~~l~~L~~la~~~~~tvii~~h~~~~~~~~~~ 294 (349)
T 1pzn_A 263 KHLADLHRLANLYDIAVFVTNQVQARPDAFFG 294 (349)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEECC--------
T ss_pred HHHHHHHHHHHHcCcEEEEEcccccccccccC
Confidence 22222222223458899999998776554443
No 100
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.53 E-value=8.8e-15 Score=131.16 Aligned_cols=137 Identities=16% Similarity=0.126 Sum_probs=84.1
Q ss_pred hCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHH---------Hhhhhh----ccccccceeee
Q psy2071 76 QNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQ---------RVSEEM----DCQLGQEVGYS 142 (302)
Q Consensus 76 ~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~---------~~~~~~----~~~~~~~v~~~ 142 (302)
+|++++|+|||||||||+++.|+|++.|+.|++.+.+.+..+.++..... .+.+.. ..++.+++.+.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~ 180 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM 180 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999998765433211110 011110 01112222111
Q ss_pred ------e-eecCCCCccccccccCHHHHHHHhccccCCCCCc--EEEEcCCCCCCcchHHHHHHHHHHHHHcCCCcEEEE
Q psy2071 143 ------I-RFEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQ--VILLDEAHERTLATDILMGVLKEVIKQRADLKLVIM 213 (302)
Q Consensus 143 ------~-~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~--lliLDE~~~p~~~lD~~~~~l~~ll~~~~~~~~~ii 213 (302)
. -.+.....+.....++...+||+++||+++.+|+ ++.||. +.+.+.. ..+..+.+. .+.+++
T Consensus 181 ~~~~~d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa----~t~~~~~-~~~~~~~~~---~~~t~i 252 (304)
T 1rj9_A 181 KARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDA----VTGQNGL-EQAKKFHEA---VGLTGV 252 (304)
T ss_dssp HHHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEET----TBCTHHH-HHHHHHHHH---HCCSEE
T ss_pred HhCCCCEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcH----HHHHHHH-HHHHHHHHH---cCCcEE
Confidence 0 0111111112223355566899999999999999 677875 4555532 333443322 267899
Q ss_pred EEecCHH
Q psy2071 214 SATLDAG 220 (302)
Q Consensus 214 ~~thd~~ 220 (302)
++||+.+
T Consensus 253 ivTh~d~ 259 (304)
T 1rj9_A 253 IVTKLDG 259 (304)
T ss_dssp EEECTTS
T ss_pred EEECCcc
Confidence 9999843
No 101
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.48 E-value=2.1e-14 Score=127.14 Aligned_cols=138 Identities=12% Similarity=0.088 Sum_probs=78.8
Q ss_pred HHHhCCEEEEEccCCCCccchhhhhhhccccc----------CCCE-EEeecCchhhhHHHHHHHhhhhhcc----cccc
Q psy2071 73 LLAQNQCIVLVGETGSGKTTQIPQWCVEYSKS----------VGAK-AVACTQPRRVAAMSVAQRVSEEMDC----QLGQ 137 (302)
Q Consensus 73 ~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~----------~G~~-~i~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 137 (302)
-+.+|++++|+||||||||||+.++++..... .|.+ ++........ .......+...... ...+
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e~~~~~-~~~r~~~~g~~~~~~~~~~~~~ 104 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDPPTA-IHHRLHALGAHLSAEERQAVAD 104 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSSCHHH-HHHHHHHHHTTSCHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECCCCHHH-HHHHHHHHHhhcChhhhhhccC
Confidence 47899999999999999999999999866532 3444 3333332210 00001111110000 0011
Q ss_pred ceeeeeeecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCc--chHHH----HHHHHHHHHHc-CCCcE
Q psy2071 138 EVGYSIRFEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTL--ATDIL----MGVLKEVIKQR-ADLKL 210 (302)
Q Consensus 138 ~v~~~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~--~lD~~----~~~l~~ll~~~-~~~~~ 210 (302)
.+. +. ...+..+..+|+|+++++ ++++.+|++||+|| |+. ++|.. ...+.+.+... ++.++
T Consensus 105 ~l~----l~--~~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe---~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~ 172 (279)
T 1nlf_A 105 GLL----IQ--PLIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDT---LRRFHIEEENASGPMAQVIGRMEAIAADTGC 172 (279)
T ss_dssp HEE----EC--CCTTSCCCTTSHHHHHHH---HHHHTTCSEEEEEC---GGGGCCSCTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred ceE----Ee--ecCCCCcccCCHHHHHHH---HHhcCCCCEEEECC---HHHhcCCCcCchHHHHHHHHHHHHHHHHcCC
Confidence 221 11 112345678999998875 46677999999999 877 66641 12333333333 34588
Q ss_pred EEEEEecCHHHHH
Q psy2071 211 VIMSATLDAGKFQ 223 (302)
Q Consensus 211 ~ii~~thd~~~~~ 223 (302)
|||+++|+.....
T Consensus 173 tvi~i~H~~~~~~ 185 (279)
T 1nlf_A 173 SIVFLHHASKGAA 185 (279)
T ss_dssp EEEEEEEC-----
T ss_pred EEEEEecCCCccc
Confidence 9999999987653
No 102
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.47 E-value=1.1e-14 Score=146.98 Aligned_cols=139 Identities=10% Similarity=0.055 Sum_probs=98.0
Q ss_pred ccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhh--hccccccc-------------eeeeeeecCC-CCccc
Q psy2071 90 KTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEE--MDCQLGQE-------------VGYSIRFEDC-SSPKT 153 (302)
Q Consensus 90 KSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-------------v~~~~~~~~~-~~~~~ 153 (302)
.+|...|....+.|..+.+.+.|.+........+...+... ...+..+. ..+...+... ...++
T Consensus 381 ~~~C~~C~g~rl~~~~~~V~i~G~~i~~~~~~~v~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~vgL~~l~l~r 460 (916)
T 3pih_A 381 QRTCSVCGGRRLNREALSVKINGLNIHEFTELSISEELEFLKNLNLTEREREIVGELLKEIEKRLEFLVDVGLEYLTLSR 460 (916)
T ss_dssp EEECTTTCSCCBCTTGGGEEETTEEHHHHHHSBHHHHHHHHHSCCCCTTTTTTHHHHHHHHHHHHHHHHTTTCTTCBTTS
T ss_pred cccchhcccccCChHhcCcEECCccHHHhhhCCHHHHHHHHHhccCcHHHHHHHHhhHHHHHHHHHHHHHcCCccccccC
Confidence 35566666777889999999999876544333333222111 11111000 0000011111 12356
Q ss_pred cccccCHHHHHHHhccccCCCCCc--EEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCC
Q psy2071 154 VLKYMTDGMLLREGMSDPMLENYQ--VILLDEAHERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAP 230 (302)
Q Consensus 154 ~~~~lS~G~~qr~~la~al~~~p~--lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~ 230 (302)
.+..|||||+||++||++|+.+|+ +||||| ||++||+.. ..+.++++.+++.|.|||++|||++.+. .||+++
T Consensus 461 ~~~~LSGGe~QRv~LAraL~~~p~~~lllLDE---PT~gLD~~~~~~l~~~L~~L~~~G~TvivVtHd~~~~~-~aD~ii 536 (916)
T 3pih_A 461 SATTLSGGESQRIRLATQIGSGLTGVIYVLDE---PTIGLHPRDTERLIKTLKKLRDLGNTVIVVEHDEEVIR-NADHII 536 (916)
T ss_dssp BGGGCCHHHHHHHHHHHHHHTTCCSCEEEEEC---TTTTCCGGGHHHHHHHHHHTTTTTCEEEEECCCHHHHH-TCSEEE
T ss_pred CcccCCHHHHHHHHHHHHHhhCCCCcEEEEEC---CccCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH-hCCEEE
Confidence 778999999999999999999887 999999 999999877 7888898888888999999999998876 499999
Q ss_pred ee
Q psy2071 231 LM 232 (302)
Q Consensus 231 ~l 232 (302)
+|
T Consensus 537 ~l 538 (916)
T 3pih_A 537 DI 538 (916)
T ss_dssp EE
T ss_pred EE
Confidence 99
No 103
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.47 E-value=3.7e-15 Score=129.60 Aligned_cols=151 Identities=9% Similarity=0.030 Sum_probs=77.2
Q ss_pred hHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhccccc-----CCCEEEeecCc--hhhhHHHHHHHhhhhhcc--c
Q psy2071 64 FEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKS-----VGAKAVACTQP--RRVAAMSVAQRVSEEMDC--Q 134 (302)
Q Consensus 64 ~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~-----~G~~~i~~~~~--~~~~~~~~~~~~~~~~~~--~ 134 (302)
..+++++++.+++|++++|+|||||||||++++|+|++... ...+.+..++. +................. .
T Consensus 12 ~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~lG~~~~~~~~~~i~~v~~d~~~~~l~~~~~~~~~~~~~~~~~~ 91 (245)
T 2jeo_A 12 DLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQDRFYKVLTAEQKAKALKGQYNFDHP 91 (245)
T ss_dssp -----------CCSEEEEEECSTTSSHHHHHHHHHHHHTGGGSCGGGCSEEEEEGGGGBCCCCHHHHHHHHTTCCCTTSG
T ss_pred ceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHhchhcccccCCceEEEeCCcCccccCHhHhhhhhccCCCCCCc
Confidence 34689999999999999999999999999999999976211 01121222211 001111000000000000 0
Q ss_pred cc---cceeeeee-ecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHHHHHHHHHHHcCCCcE
Q psy2071 135 LG---QEVGYSIR-FEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILMGVLKEVIKQRADLKL 210 (302)
Q Consensus 135 ~~---~~v~~~~~-~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~~~l~~ll~~~~~~~~ 210 (302)
.. +.+.-.+. +. ......+..+|+||+||+.+ ++++.+|+++|+|| |....+... .+ . .+.
T Consensus 92 ~~~~~~~~~~~L~~l~--~~~~~~~~~ls~g~~~r~~~-~~~~~~~~~lilDg---~~~~~~~~l---~~----~--~~~ 156 (245)
T 2jeo_A 92 DAFDNDLMHRTLKNIV--EGKTVEVPTYDFVTHSRLPE-TTVVYPADVVLFEG---ILVFYSQEI---RD----M--FHL 156 (245)
T ss_dssp GGBCHHHHHHHHHHHH--TTCCEEECCEETTTTEECSS-CEEECCCSEEEEEC---TTTTTSHHH---HT----T--CSE
T ss_pred ccccHHHHHHHHHHHH--CCCCeecccccccccCccCc-eEEecCCCEEEEeC---ccccccHHH---HH----h--cCe
Confidence 00 00000000 10 12234567799999999988 58889999999999 766555421 11 1 378
Q ss_pred EEEEEecCHHHH-HhhccCC
Q psy2071 211 VIMSATLDAGKF-QQYFDNA 229 (302)
Q Consensus 211 ~ii~~thd~~~~-~~~~d~~ 229 (302)
+|+++||+...+ ..+++++
T Consensus 157 ~i~v~th~~~~~~r~~~r~~ 176 (245)
T 2jeo_A 157 RLFVDTDSDVRLSRRVLRDV 176 (245)
T ss_dssp EEEEECCHHHHHHHHHHHHT
T ss_pred EEEEECCHHHHHHHHHHHHH
Confidence 999999974444 4444433
No 104
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.47 E-value=2e-15 Score=135.40 Aligned_cols=137 Identities=16% Similarity=0.090 Sum_probs=70.4
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhc-ccccCCCEEEeecCchhhhHHHHHHHhhh----hhcccccccee
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVE-YSKSVGAKAVACTQPRRVAAMSVAQRVSE----EMDCQLGQEVG 140 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~-~~~~~G~~~i~~~~~~~~~~~~~~~~~~~----~~~~~~~~~v~ 140 (302)
+++++++.| +|+|+||||||||+++|+|. ..|++| +.+.|..............+.+ ....++.++.+
T Consensus 13 ~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g 85 (301)
T 2qnr_A 13 VKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPG 85 (301)
T ss_dssp -----CEEE------EEEEETTSSHHHHHHHHHC-------------------------CEEEEC---CCEEEEEEEEC-
T ss_pred EEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCCcceEeeEEEEecCCCcccCcchhhhhh
Confidence 455555544 99999999999999999997 788888 6665543221100000001111 12334555555
Q ss_pred eeeeecC--C--CCcc-------ccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcc-hHHHHHHHHHHHHHc-CC
Q psy2071 141 YSIRFED--C--SSPK-------TVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLA-TDILMGVLKEVIKQR-AD 207 (302)
Q Consensus 141 ~~~~~~~--~--~~~~-------~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~-lD~~~~~l~~ll~~~-~~ 207 (302)
+...... . .... ..+..+|+||+||+.+|++++ +|++|| |+.+ +|+... ++++.. .+
T Consensus 86 ~~~~~~~~e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~----ll~lde---Pt~~~Ld~~~~---~~l~~l~~~ 155 (301)
T 2qnr_A 86 YGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHC----CFYFIS---PFGHGLKPLDV---AFMKAIHNK 155 (301)
T ss_dssp ----------CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCE----EEEEEC---SSSSSCCHHHH---HHHHHHTTT
T ss_pred hhhhcCcHHHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhh----eeeeec---CcccCCCHHHH---HHHHHHHhc
Confidence 5322110 0 0011 445679999999999999986 999999 9874 998752 333332 23
Q ss_pred CcEEEEEEecCH
Q psy2071 208 LKLVIMSATLDA 219 (302)
Q Consensus 208 ~~~~ii~~thd~ 219 (302)
.++++++++||+
T Consensus 156 ~~iilV~~K~Dl 167 (301)
T 2qnr_A 156 VNIVPVIAKADT 167 (301)
T ss_dssp SCEEEEECCGGG
T ss_pred CCEEEEEEeCCC
Confidence 479999999997
No 105
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.47 E-value=2.5e-14 Score=131.80 Aligned_cols=128 Identities=13% Similarity=0.102 Sum_probs=85.0
Q ss_pred HHHHHHHHHhCCEEEEEccCCCCccchhhhhhhccccc-CCCEEEeecCchhhhHHHHHHHhhhhhccccccceeeeeee
Q psy2071 67 RTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKS-VGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRF 145 (302)
Q Consensus 67 ~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~-~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 145 (302)
+++++ +++|++++|+|||||||||++++++|++.|+ +|.+.+.+.... . .....+++..+.
T Consensus 128 l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e-~---------------~~~~~~~~v~Q~ 189 (372)
T 2ewv_A 128 VLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIE-Y---------------VFKHKKSIVNQR 189 (372)
T ss_dssp HHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCC-S---------------CCCCSSSEEEEE
T ss_pred HHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHh-h---------------hhccCceEEEee
Confidence 44443 7899999999999999999999999999998 898877664321 0 011223333321
Q ss_pred cCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEEEecCHHHHHhh
Q psy2071 146 EDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILMGVLKEVIKQRADLKLVIMSATLDAGKFQQY 225 (302)
Q Consensus 146 ~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~~~l~~ll~~~~~~~~~ii~~thd~~~~~~~ 225 (302)
.... ....+ +.+++++|..+|++|++|| |+ |... +..+++.. ..|.++++++|+.+ +..+
T Consensus 190 ~~g~----~~~~~------~~~l~~~L~~~pd~illdE---~~---d~e~--~~~~l~~~-~~g~~vi~t~H~~~-~~~~ 249 (372)
T 2ewv_A 190 EVGE----DTKSF------ADALRAALREDPDVIFVGE---MR---DLET--VETALRAA-ETGHLVFGTLHTNT-AIDT 249 (372)
T ss_dssp EBTT----TBSCS------HHHHHHHTTSCCSEEEESC---CC---SHHH--HHHHHHHH-TTTCEEEECCCCCS-HHHH
T ss_pred ecCC----CHHHH------HHHHHHHhhhCcCEEEECC---CC---CHHH--HHHHHHHH-hcCCEEEEEECcch-HHHH
Confidence 1000 01222 4588889999999999999 87 3322 22223332 34788999999855 7778
Q ss_pred ccCCCee
Q psy2071 226 FDNAPLM 232 (302)
Q Consensus 226 ~d~~~~l 232 (302)
+|+++.|
T Consensus 250 ~~rl~~l 256 (372)
T 2ewv_A 250 IHRIVDI 256 (372)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 8887554
No 106
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.46 E-value=1.1e-14 Score=145.81 Aligned_cols=142 Identities=15% Similarity=0.084 Sum_probs=83.9
Q ss_pred HHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccc-cCCCEEEeecCchhhhHHHHHHHhhhhhccccccceeeeeee
Q psy2071 67 RTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSK-SVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRF 145 (302)
Q Consensus 67 ~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~-~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 145 (302)
.+++++. ++|++++|+|||||||||++++++|+..+ ..|.. + +... ....+...+ ..++
T Consensus 598 lndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~~-v----pa~~------------~~i~~~~~i--~~~~ 657 (800)
T 1wb9_A 598 ANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGSY-V----PAQK------------VEIGPIDRI--FTRV 657 (800)
T ss_dssp CEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTCC-B----SSSE------------EEECCCCEE--EEEE
T ss_pred eeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcCcc-c----chhc------------ccceeHHHH--HhhC
Confidence 4555666 78999999999999999999999997532 22310 0 0000 000000011 1111
Q ss_pred cCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH--HHHHHHHHHcCC-CcEEEEEEecCHHHH
Q psy2071 146 EDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM--GVLKEVIKQRAD-LKLVIMSATLDAGKF 222 (302)
Q Consensus 146 ~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~--~~l~~ll~~~~~-~~~~ii~~thd~~~~ 222 (302)
............+|.+|++. +.+...+.+|++||||| |+.|+|+.- .++..+++...+ .|.+++++||+.+..
T Consensus 658 ~~~d~l~~~~stf~~e~~~~-~~il~~a~~psLlLLDE---p~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~el~ 733 (800)
T 1wb9_A 658 GAADDLASGRSTFMVEMTET-ANILHNATEYSLVLMDE---IGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELT 733 (800)
T ss_dssp C-----------CHHHHHHH-HHHHHHCCTTEEEEEES---CCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGG
T ss_pred CHHHHHHhhhhhhhHHHHHH-HHHHHhccCCCEEEEEC---CCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCHHHH
Confidence 11111112234466777654 33444589999999999 988877543 334566665544 488999999999765
Q ss_pred HhhccCCCeee
Q psy2071 223 QQYFDNAPLMN 233 (302)
Q Consensus 223 ~~~~d~~~~l~ 233 (302)
.+||++..+.
T Consensus 734 -~l~d~~~~v~ 743 (800)
T 1wb9_A 734 -QLPEKMEGVA 743 (800)
T ss_dssp -GHHHHSTTEE
T ss_pred -HHhhhhhceE
Confidence 5898876654
No 107
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.45 E-value=1.9e-14 Score=122.26 Aligned_cols=149 Identities=12% Similarity=0.015 Sum_probs=87.6
Q ss_pred HHHHHHH-HHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCc-hhhhHHHHHHHhhhhhccccccceeeee
Q psy2071 66 YRTEFMT-LLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQP-RRVAAMSVAQRVSEEMDCQLGQEVGYSI 143 (302)
Q Consensus 66 ~~~~i~~-~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 143 (302)
.++++.. -+++|++++|+|+||||||||+.++++ .+..+.+++..... ......... ........ .+.
T Consensus 8 ~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~~~~v~~i~~~~~~~~~~~~~~~----~~~~~~~~-~~~--- 77 (220)
T 2cvh_A 8 SLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LSGKKVAYVDTEGGFSPERLVQMA----ETRGLNPE-EAL--- 77 (220)
T ss_dssp HHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HHCSEEEEEESSCCCCHHHHHHHH----HTTTCCHH-HHH---
T ss_pred HHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--HcCCcEEEEECCCCCCHHHHHHHH----HhcCCChH-HHh---
Confidence 4666665 688999999999999999999999998 32223334433321 111111111 11111000 000
Q ss_pred eecCCCCccccccccCHHH--HHHHhccccCCCC-CcEEEEcCCCCCCcchHHH---------H-HHHHHHHHHcCCCcE
Q psy2071 144 RFEDCSSPKTVLKYMTDGM--LLREGMSDPMLEN-YQVILLDEAHERTLATDIL---------M-GVLKEVIKQRADLKL 210 (302)
Q Consensus 144 ~~~~~~~~~~~~~~lS~G~--~qr~~la~al~~~-p~lliLDE~~~p~~~lD~~---------~-~~l~~ll~~~~~~~~ 210 (302)
.+-.+..+++++ ++++..+++++.+ |++||+|| |+..+|.. . ..+..+....++.++
T Consensus 78 -------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~---~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~ 147 (220)
T 2cvh_A 78 -------SRFILFTPSDFKEQRRVIGSLKKTVDSNFALVVVDS---ITAHYRAEENRSGLIAELSRQLQVLLWIARKHNI 147 (220)
T ss_dssp -------HHEEEECCTTTSHHHHHHHHHHHHCCTTEEEEEEEC---CCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTC
T ss_pred -------hcEEEEecCCHHHHHHHHHHHHHHhhcCCCEEEEcC---cHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCC
Confidence 000122334443 4567777788875 99999999 88777631 1 222222222223478
Q ss_pred EEEEEecCHH-------------HHHhhccCCCeeee
Q psy2071 211 VIMSATLDAG-------------KFQQYFDNAPLMNV 234 (302)
Q Consensus 211 ~ii~~thd~~-------------~~~~~~d~~~~l~i 234 (302)
++++++|... .+..+||.+++|+-
T Consensus 148 ~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~ 184 (220)
T 2cvh_A 148 PVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDK 184 (220)
T ss_dssp CEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEE
T ss_pred EEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEE
Confidence 8999999765 67889999999983
No 108
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.40 E-value=7.3e-14 Score=128.24 Aligned_cols=135 Identities=16% Similarity=0.056 Sum_probs=90.0
Q ss_pred HHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhhccccccceeeee-ee
Q psy2071 67 RTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSI-RF 145 (302)
Q Consensus 67 ~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~ 145 (302)
.+++++.+++|++++|+||||||||||+++|+|+++|+.|.+.+.+....... .....+++.. +.
T Consensus 165 ~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~~~~--------------~~~~~v~~v~~q~ 230 (361)
T 2gza_A 165 MSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPELFLP--------------DHPNHVHLFYPSE 230 (361)
T ss_dssp HHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCCCCT--------------TCSSEEEEECC--
T ss_pred HHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccccCcc--------------ccCCEEEEeecCc
Confidence 48999999999999999999999999999999999999999999864211000 0112333332 11
Q ss_pred cCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEEEecCHHHHHhh
Q psy2071 146 EDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILMGVLKEVIKQRADLKLVIMSATLDAGKFQQY 225 (302)
Q Consensus 146 ~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~~~l~~ll~~~~~~~~~ii~~thd~~~~~~~ 225 (302)
.. ..+++++-++..++.++..+|+.+++|| +... . +.+++........+++.++|..+ +...
T Consensus 231 ~~--------~~~~~~~t~~~~i~~~l~~~pd~~l~~e---~r~~--~----~~~~l~~l~~g~~~~l~t~H~~~-~~~~ 292 (361)
T 2gza_A 231 AK--------EEENAPVTAATLLRSCLRMKPTRILLAE---LRGG--E----AYDFINVAASGHGGSITSCHAGS-CELT 292 (361)
T ss_dssp ----------------CCHHHHHHHHTTSCCSEEEESC---CCST--H----HHHHHHHHHTTCCSCEEEEECSS-HHHH
T ss_pred cc--------cccccccCHHHHHHHHHhcCCCEEEEcC---chHH--H----HHHHHHHHhcCCCeEEEEECCCC-HHHH
Confidence 00 0113455677888888889999999999 5431 1 22233333332346677789854 7788
Q ss_pred ccCCCeee
Q psy2071 226 FDNAPLMN 233 (302)
Q Consensus 226 ~d~~~~l~ 233 (302)
++|+..+.
T Consensus 293 ~~Rl~~l~ 300 (361)
T 2gza_A 293 FERLALMV 300 (361)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88887775
No 109
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.37 E-value=1e-13 Score=118.56 Aligned_cols=127 Identities=12% Similarity=0.025 Sum_probs=72.3
Q ss_pred HHHHhCCEEEEEccCCCCccchhhhhhhcccc--cCCCEEEeecCchh-----hhHHHHHHHhhhhhccccccceeeeee
Q psy2071 72 TLLAQNQCIVLVGETGSGKTTQIPQWCVEYSK--SVGAKAVACTQPRR-----VAAMSVAQRVSEEMDCQLGQEVGYSIR 144 (302)
Q Consensus 72 ~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~--~~G~~~i~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~v~~~~~ 144 (302)
...++|++++|+||||||||||+++|+|+++| ..|.+.+.+..++. +.+..+.... ....+....+...+.
T Consensus 11 ~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~--f~~~~~~~~f~E~~~ 88 (219)
T 1s96_A 11 HHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDE--FKEMISRDAFLEHAE 88 (219)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHHH--HHHHHHTTCEEEEEE
T ss_pred ccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcccccCceEEECCHHH--HHHHHhcCHHHHHHH
Confidence 35789999999999999999999999999986 57888777655432 1111111111 111112111111111
Q ss_pred ecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHH
Q psy2071 145 FEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQ 223 (302)
Q Consensus 145 ~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~ 223 (302)
+.... .. .+ ++. +..++..++++||| +|+.. ..+++++. .+.+|+++||+++.+.
T Consensus 89 ~~~~~-yg-----~~---~~~---v~~~l~~G~illLD--------LD~~~~~~i~~~l~----~~~tI~i~th~~~~l~ 144 (219)
T 1s96_A 89 VFGNY-YG-----TS---REA---IEQVLATGVDVFLD--------IDWQGAQQIRQKMP----HARSIFILPPSKIELD 144 (219)
T ss_dssp ETTEE-EE-----EE---HHH---HHHHHTTTCEEEEE--------CCHHHHHHHHHHCT----TCEEEEEECSSHHHHH
T ss_pred HHhcc-CC-----CC---HHH---HHHHHhcCCeEEEE--------ECHHHHHHHHHHcc----CCEEEEEECCCHHHHH
Confidence 11100 00 01 111 12233457999999 67665 55555543 4799999999999887
Q ss_pred h
Q psy2071 224 Q 224 (302)
Q Consensus 224 ~ 224 (302)
+
T Consensus 145 ~ 145 (219)
T 1s96_A 145 R 145 (219)
T ss_dssp H
T ss_pred H
Confidence 6
No 110
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.36 E-value=1.4e-13 Score=124.19 Aligned_cols=136 Identities=15% Similarity=0.116 Sum_probs=83.5
Q ss_pred CEEEEEccCCCCccchhhhhhhcc--------cccCCCEEEeecCchhh------------------hHHHHHHHh---h
Q psy2071 78 QCIVLVGETGSGKTTQIPQWCVEY--------SKSVGAKAVACTQPRRV------------------AAMSVAQRV---S 128 (302)
Q Consensus 78 ~i~~liG~nGsGKSTll~~i~g~~--------~~~~G~~~i~~~~~~~~------------------~~~~~~~~~---~ 128 (302)
++++|+|+||||||||++.++|.. .|+.|.+.+++...... ........+ .
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~ 84 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL 84 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence 589999999999999999999986 78999999887653221 001111111 1
Q ss_pred h----hhccccccceeeee------------------------eecCCCCccccccccCHHHHHHHhccccCCCCCcEEE
Q psy2071 129 E----EMDCQLGQEVGYSI------------------------RFEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVIL 180 (302)
Q Consensus 129 ~----~~~~~~~~~v~~~~------------------------~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lli 180 (302)
+ .+..++.+++++.. ..-+..........+|+||+||+..+++++.+|+++
T Consensus 85 q~~~~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~~~ls~g~~Q~~~ad~ill~k~dl~- 163 (318)
T 1nij_A 85 DKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGYADRILLTKTDVA- 163 (318)
T ss_dssp HHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHHHCHHHHHHHHTCSEEEEECTTTC-
T ss_pred hcCCCCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEEHHHHHHHHhhchHHHHHHHhCCEEEEECcccC-
Confidence 1 11334444444321 000000111122358999999999999999999987
Q ss_pred EcCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEEEecCHHHHHhhcc
Q psy2071 181 LDEAHERTLATDILMGVLKEVIKQRADLKLVIMSATLDAGKFQQYFD 227 (302)
Q Consensus 181 LDE~~~p~~~lD~~~~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d 227 (302)
|| | . .+.+.++..+ .+.+|+++||+...+..++|
T Consensus 164 -de---~----~----~l~~~l~~l~-~~~~ii~~sh~~~~~~~l~~ 197 (318)
T 1nij_A 164 -GE---A----E----KLHERLARIN-ARAPVYTVTHGDIDLGLLFN 197 (318)
T ss_dssp -SC---T----H----HHHHHHHHHC-SSSCEEECCSSCCCGGGGSC
T ss_pred -CH---H----H----HHHHHHHHhC-CCCeEEEecccCCCHHHHhC
Confidence 98 7 2 3334444333 36789999997544444443
No 111
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.36 E-value=2e-15 Score=138.91 Aligned_cols=162 Identities=9% Similarity=0.099 Sum_probs=95.1
Q ss_pred HHHHHHHHHh--CCEEEEEccCCCCccchhhhhhhcccccC----CCEEEe----ecC----chhhhHHHHHHHhhhhhc
Q psy2071 67 RTEFMTLLAQ--NQCIVLVGETGSGKTTQIPQWCVEYSKSV----GAKAVA----CTQ----PRRVAAMSVAQRVSEEMD 132 (302)
Q Consensus 67 ~~~i~~~i~~--g~i~~liG~nGsGKSTll~~i~g~~~~~~----G~~~i~----~~~----~~~~~~~~~~~~~~~~~~ 132 (302)
...+...|.+ |+.++|+|+||||||||+++|+|++.|+. |.+.+. +.. ......+....+-.....
T Consensus 158 ~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~~~~~~~~~~I~~~~q~~~~~~ 237 (365)
T 1lw7_A 158 WKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQAMQYSDYPQMALGHQRYIDYA 237 (365)
T ss_dssp GGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSCTTSSCTTTHHHHHHHHHHHHHHH
T ss_pred hhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCCcccCChhHHHHHHHHHHHHHHHH
Confidence 3467888999 99999999999999999999999999998 877653 211 111111111111111122
Q ss_pred cccccceeeeeeecCCCCccccccccCHHHHHHHhccccC-CCCCcEEEEcCCCCC------CcchHHHH-HHHHHHHHH
Q psy2071 133 CQLGQEVGYSIRFEDCSSPKTVLKYMTDGMLLREGMSDPM-LENYQVILLDEAHER------TLATDILM-GVLKEVIKQ 204 (302)
Q Consensus 133 ~~~~~~v~~~~~~~~~~~~~~~~~~lS~G~~qr~~la~al-~~~p~lliLDE~~~p------~~~lD~~~-~~l~~ll~~ 204 (302)
.++.+++.+. ......+....+++|++++..+++++ ..+|+++||||...| +.++|+.. ..+.+++.+
T Consensus 238 ~t~~~nl~~~----~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~ 313 (365)
T 1lw7_A 238 VRHSHKIAFI----DTDFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKK 313 (365)
T ss_dssp HHHCSSEEEE----SSCHHHHHHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHH
T ss_pred HhccCCEEEE----eCCchHHHHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHH
Confidence 3444554332 11222333445667777777776665 469999999983233 34566433 334444432
Q ss_pred -cCCCcEEEEEEecCHHHHHhhccCCCeee
Q psy2071 205 -RADLKLVIMSATLDAGKFQQYFDNAPLMN 233 (302)
Q Consensus 205 -~~~~~~~ii~~thd~~~~~~~~d~~~~l~ 233 (302)
..+.+.++++++|. ....++++.+.+++
T Consensus 314 l~~~~~~~ililde~-~~~~r~~~~i~~i~ 342 (365)
T 1lw7_A 314 LLDKYKVPYIEIESP-SYLDRYNQVKAVIE 342 (365)
T ss_dssp HHHGGGCCCEEEECS-SHHHHHHHHHHHHH
T ss_pred HHHHcCCCEEEeCCC-CHHHHHHHHHHHHH
Confidence 22336677777875 46667787776665
No 112
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.36 E-value=3.2e-14 Score=139.05 Aligned_cols=130 Identities=12% Similarity=0.039 Sum_probs=74.1
Q ss_pred EEEEEccCCCCccchhhhhhhcccc-cCCCEEEeecCchhhhHHHHHHHhhhhhccccccceeeeeeecCCCCccccccc
Q psy2071 79 CIVLVGETGSGKTTQIPQWCVEYSK-SVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRFEDCSSPKTVLKY 157 (302)
Q Consensus 79 i~~liG~nGsGKSTll~~i~g~~~~-~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 157 (302)
.++|+|+||||||||+++|+|+..| ++|.+.+.|.+....... ........++|..+........+...+
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~~~~~~---------~~~~~~~~i~~v~Q~~~l~~~~tv~e~ 117 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKLKKLV---------NEDKWRGKVSYQDYEIEISDASEVEKE 117 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEEEEECS---------SSSCCEEEESCC---CCCCCHHHHHTT
T ss_pred eEEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEEEecCC---------ccccceeEEeeecccccCCCHHHHHHH
Confidence 4999999999999999999999988 799988877653110000 000112233333221111111111111
Q ss_pred cC-----------HHHHHHHhccccCCCCCcEEEEcCCCCC------CcchHHHH-HHHHHHHHHc--CCCcEEEEEEec
Q psy2071 158 MT-----------DGMLLREGMSDPMLENYQVILLDEAHER------TLATDILM-GVLKEVIKQR--ADLKLVIMSATL 217 (302)
Q Consensus 158 lS-----------~G~~qr~~la~al~~~p~lliLDE~~~p------~~~lD~~~-~~l~~ll~~~--~~~~~~ii~~th 217 (302)
+. +...+.+.++.+....|+++|+|| | ++++|+.. ..+.+++..+ ...+++++++||
T Consensus 118 i~~~~~~~~~~~~~~s~~~i~l~i~~~~~p~LlLlDe---PGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~ 194 (608)
T 3szr_A 118 INKAQNAIAGEGMGISHELITLEISSRDVPDLTLIDL---PGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPS 194 (608)
T ss_dssp HHHHHHHHHCSSSCCCSCCEEEEEEESSSCCEEEEEC---CC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEES
T ss_pred HHHHHHHhcCCccccchHHHHHHhcCCCCCceeEeeC---CCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEec
Confidence 10 011233455666678899999999 8 99999766 6777888763 344789999999
Q ss_pred CHH
Q psy2071 218 DAG 220 (302)
Q Consensus 218 d~~ 220 (302)
|++
T Consensus 195 ~~d 197 (608)
T 3szr_A 195 NVD 197 (608)
T ss_dssp SSC
T ss_pred cch
Confidence 976
No 113
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.34 E-value=5.2e-13 Score=114.97 Aligned_cols=150 Identities=12% Similarity=0.139 Sum_probs=77.5
Q ss_pred HHHHH-HHHHhCCEEEEEccCCCCccchhhhhhh--cccc-----cCCCEEEeecCchhh-hHHHHHHHhhhhhcccccc
Q psy2071 67 RTEFM-TLLAQNQCIVLVGETGSGKTTQIPQWCV--EYSK-----SVGAKAVACTQPRRV-AAMSVAQRVSEEMDCQLGQ 137 (302)
Q Consensus 67 ~~~i~-~~i~~g~i~~liG~nGsGKSTll~~i~g--~~~~-----~~G~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 137 (302)
++.+. --|++|++++|+||||||||||+.++++ ..++ ..|.+++.+...... ........+.... ..+.+
T Consensus 13 LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~-~~~~~ 91 (243)
T 1n0w_A 13 LDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSG-SDVLD 91 (243)
T ss_dssp HHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCH-HHHHH
T ss_pred HHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCH-HHHhh
Confidence 44433 2478999999999999999999999999 4544 345667766552111 1111111111100 00112
Q ss_pred ceeeeeeecCCCCccccccccCHHHHHH-HhccccC--CCCCcEEEEcCCCCCCcchHHH-------------H-HHHHH
Q psy2071 138 EVGYSIRFEDCSSPKTVLKYMTDGMLLR-EGMSDPM--LENYQVILLDEAHERTLATDIL-------------M-GVLKE 200 (302)
Q Consensus 138 ~v~~~~~~~~~~~~~~~~~~lS~G~~qr-~~la~al--~~~p~lliLDE~~~p~~~lD~~-------------~-~~l~~ 200 (302)
++.+. ...+..+... +..+..+ ..+|++|++|| ++..+|.. . ..+..
T Consensus 92 ~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~---~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 155 (243)
T 1n0w_A 92 NVAYA-------------RAFNTDHQTQLLYQASAMMVESRYALLIVDS---ATALYRTDYSGRGELSARQMHLARFLRM 155 (243)
T ss_dssp TEEEE-------------ECCSHHHHHHHHHHHHHHHHHSCEEEEEEET---SSGGGC-------CHHHHHHHHHHHHHH
T ss_pred CeEEE-------------ecCCHHHHHHHHHHHHHHHhcCCceEEEEeC---chHHHHHHhcCCccHHHHHHHHHHHHHH
Confidence 22111 1122232221 1111112 25899999999 77777642 1 22333
Q ss_pred HHHHcCCCcEEEEEEecCHHHHHh-------------------hccCCCeee
Q psy2071 201 VIKQRADLKLVIMSATLDAGKFQQ-------------------YFDNAPLMN 233 (302)
Q Consensus 201 ll~~~~~~~~~ii~~thd~~~~~~-------------------~~d~~~~l~ 233 (302)
+....++.+++|++++|....+.. +||.+++|+
T Consensus 156 l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~ 207 (243)
T 1n0w_A 156 LLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLR 207 (243)
T ss_dssp HHHHHHHHCCEEEEEC-------------------------CCTTCEEEEEE
T ss_pred HHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEE
Confidence 333333458899999997665443 788888887
No 114
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.32 E-value=9.6e-13 Score=105.70 Aligned_cols=87 Identities=15% Similarity=0.181 Sum_probs=58.8
Q ss_pred hCCEEEEEccCCCCccchhhhhhhcccccCC--CEEEeecCchhhhHHHHHHHhhhhhccccccceeeeeeecCCCCccc
Q psy2071 76 QNQCIVLVGETGSGKTTQIPQWCVEYSKSVG--AKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRFEDCSSPKT 153 (302)
Q Consensus 76 ~g~i~~liG~nGsGKSTll~~i~g~~~~~~G--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 153 (302)
+|++++|+||||||||||++++++...+ .| .+++.+.+... .
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~~~~~~~~~~~~~-----------------------------------~ 78 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALE-AGKNAAYIDAASMPL-----------------------------------T 78 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHT-TTCCEEEEETTTSCC-----------------------------------C
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHh-cCCcEEEEcHHHhhH-----------------------------------H
Confidence 8999999999999999999999998876 45 33333221100 0
Q ss_pred cccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHHHHHHHHHHHcCCCcEE-EEEEecC
Q psy2071 154 VLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILMGVLKEVIKQRADLKLV-IMSATLD 218 (302)
Q Consensus 154 ~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~~~l~~ll~~~~~~~~~-ii~~thd 218 (302)
+++.+|++||+|| ++...+.....+.++++.+.+.+.+ +|++||.
T Consensus 79 -----------------~~~~~~~lLilDE---~~~~~~~~~~~l~~li~~~~~~g~~~iiits~~ 124 (149)
T 2kjq_A 79 -----------------DAAFEAEYLAVDQ---VEKLGNEEQALLFSIFNRFRNSGKGFLLLGSEY 124 (149)
T ss_dssp -----------------GGGGGCSEEEEES---TTCCCSHHHHHHHHHHHHHHHHTCCEEEEEESS
T ss_pred -----------------HHHhCCCEEEEeC---ccccChHHHHHHHHHHHHHHHcCCcEEEEECCC
Confidence 2356799999999 5553333345566776655544555 6667773
No 115
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.32 E-value=4.1e-13 Score=134.50 Aligned_cols=79 Identities=14% Similarity=0.059 Sum_probs=70.3
Q ss_pred ccccccccCHHHHHHHhccccCCCCCc--EEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhcc
Q psy2071 151 PKTVLKYMTDGMLLREGMSDPMLENYQ--VILLDEAHERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFD 227 (302)
Q Consensus 151 ~~~~~~~lS~G~~qr~~la~al~~~p~--lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d 227 (302)
.++.+..|||||+||++||++|+.+|+ ++|||| ||++||+.. ..+.++++.+.+.|.|||+++||++.+ ..||
T Consensus 373 l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDE---PT~~Ld~~~~~~L~~~l~~L~~~G~TVIvVeHdl~~l-~~aD 448 (842)
T 2vf7_A 373 LDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDE---PSAGLHPADTEALLSALENLKRGGNSLFVVEHDLDVI-RRAD 448 (842)
T ss_dssp TTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEEC---TTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHHHH-TTCS
T ss_pred ccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeC---ccccCCHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHH-HhCC
Confidence 467788999999999999999999994 999999 999999766 778888887777899999999999966 5799
Q ss_pred CCCeee
Q psy2071 228 NAPLMN 233 (302)
Q Consensus 228 ~~~~l~ 233 (302)
++++|.
T Consensus 449 ~ii~lg 454 (842)
T 2vf7_A 449 WLVDVG 454 (842)
T ss_dssp EEEEEC
T ss_pred EEEEeC
Confidence 999994
No 116
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.31 E-value=2.4e-13 Score=112.21 Aligned_cols=106 Identities=17% Similarity=0.116 Sum_probs=66.7
Q ss_pred HHHhCCEEEEEccCCCCccchhhhhhhcccccCCC-EEE-eecCchhhhHHHHHHHhhhhhccccccceeeeeeecCCCC
Q psy2071 73 LLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGA-KAV-ACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRFEDCSS 150 (302)
Q Consensus 73 ~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~-~~i-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 150 (302)
.+.+|+.++|+||||||||||++++++.+.+..|. +.+ ...+ ....+..... ...
T Consensus 34 ~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~--------~~~~~~~~~~------------~~~--- 90 (180)
T 3ec2_A 34 NPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKD--------LIFRLKHLMD------------EGK--- 90 (180)
T ss_dssp CGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHH--------HHHHHHHHHH------------HTC---
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHH--------HHHHHHHHhc------------Cch---
Confidence 34679999999999999999999999999877773 222 1111 1111100000 000
Q ss_pred ccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCc-chHHHH-HHHHHHHHHcCCCcEEEEEEecCH
Q psy2071 151 PKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTL-ATDILM-GVLKEVIKQRADLKLVIMSATLDA 219 (302)
Q Consensus 151 ~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~-~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~ 219 (302)
.. ....+ +.+|++||||| ++. ++|+.. ..+.+++..+.+.+.++|++||..
T Consensus 91 ~~--------~~~~~-------~~~~~llilDE---~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~ 143 (180)
T 3ec2_A 91 DT--------KFLKT-------VLNSPVLVLDD---LGSERLSDWQRELISYIITYRYNNLKSTIITTNYS 143 (180)
T ss_dssp CS--------HHHHH-------HHTCSEEEEET---CSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCC
T ss_pred HH--------HHHHH-------hcCCCEEEEeC---CCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 00 00111 23899999999 663 777666 677788876655577788888854
No 117
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.28 E-value=1.4e-12 Score=131.36 Aligned_cols=79 Identities=14% Similarity=0.092 Sum_probs=70.7
Q ss_pred ccccccccCHHHHHHHhccccCCCCC--cEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhcc
Q psy2071 151 PKTVLKYMTDGMLLREGMSDPMLENY--QVILLDEAHERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFD 227 (302)
Q Consensus 151 ~~~~~~~lS~G~~qr~~la~al~~~p--~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d 227 (302)
.++.+..|||||+||++||++|..+| +++|||| ||++||+.. ..+.++++.+++.|.|||+++||++++. .||
T Consensus 498 ldR~~~tLSGGEkQRV~LA~aL~~~~~~~llILDE---PTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~i~-~AD 573 (972)
T 2r6f_A 498 LSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDE---PSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTML-AAD 573 (972)
T ss_dssp SSSBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEEC---TTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHHHHH-SCS
T ss_pred cCCccccCCHHHHHHHHHHHHHhhCCCCCEEEEeC---cccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH-hCC
Confidence 46778899999999999999999985 9999999 999999876 7788888877788999999999999875 699
Q ss_pred CCCeee
Q psy2071 228 NAPLMN 233 (302)
Q Consensus 228 ~~~~l~ 233 (302)
++++|.
T Consensus 574 rIi~Lg 579 (972)
T 2r6f_A 574 YLIDIG 579 (972)
T ss_dssp EEEEEC
T ss_pred EEEEeC
Confidence 999993
No 118
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.27 E-value=2e-12 Score=130.61 Aligned_cols=79 Identities=14% Similarity=0.091 Sum_probs=70.7
Q ss_pred ccccccccCHHHHHHHhccccCCCC--CcEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhcc
Q psy2071 151 PKTVLKYMTDGMLLREGMSDPMLEN--YQVILLDEAHERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFD 227 (302)
Q Consensus 151 ~~~~~~~lS~G~~qr~~la~al~~~--p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d 227 (302)
.++.+..|||||+||++||++|..+ |+++|||| ||++||+.. ..|.++++.+++.|.|||+++||++++. .||
T Consensus 515 l~r~~~tLSGGEkQRV~LA~aL~~~~~~~llILDE---PTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~i~-~AD 590 (993)
T 2ygr_A 515 LSRAAATLSGGEAQRIRLATQIGSGLVGVLYVLDE---PSIGLHQRDNRRLIETLTRLRDLGNTLIVVEHDEDTIE-HAD 590 (993)
T ss_dssp TTCBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEEC---TTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHH-TCS
T ss_pred cCCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEeC---cccCCCHHHHHHHHHHHHHHHHcCCEEEEECCCHHHHH-hCC
Confidence 4567788999999999999999998 58999999 999999877 7788888877778999999999999875 799
Q ss_pred CCCeee
Q psy2071 228 NAPLMN 233 (302)
Q Consensus 228 ~~~~l~ 233 (302)
++++|.
T Consensus 591 rIi~Lg 596 (993)
T 2ygr_A 591 WIVDIG 596 (993)
T ss_dssp EEEEEC
T ss_pred EEEEec
Confidence 999993
No 119
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.26 E-value=6e-15 Score=124.96 Aligned_cols=140 Identities=10% Similarity=-0.047 Sum_probs=78.5
Q ss_pred HHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhh--hHHHHHHHhhhhhcc--c-cccceeeee-eecC
Q psy2071 74 LAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRV--AAMSVAQRVSEEMDC--Q-LGQEVGYSI-RFED 147 (302)
Q Consensus 74 i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~--~~~~~~~~~~~~~~~--~-~~~~v~~~~-~~~~ 147 (302)
.++|++++|+|+|||||||++++|+|++.| .+.+...+.... .......+....+.. . ..+.+...+ .+..
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~---~i~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 79 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE---RVALLPMDHYYKDLGHLPLEERLRVNYDHPDAFDLALYLEHAQALLR 79 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG---GEEEEEGGGCBCCCTTSCHHHHHHSCTTSGGGBCHHHHHHHHHHHHT
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC---CeEEEecCccccCcccccHHHhcCCCCCChhhhhHHHHHHHHHHHHc
Confidence 468999999999999999999999998875 343333322110 000010110000000 0 000000000 0000
Q ss_pred CCCccccccccCHHHH----HHHhccccCCCCCcEEEEcCCCCCCcc-------hHHHH-HHHHHHHHH-cCCCcEEEEE
Q psy2071 148 CSSPKTVLKYMTDGML----LREGMSDPMLENYQVILLDEAHERTLA-------TDILM-GVLKEVIKQ-RADLKLVIMS 214 (302)
Q Consensus 148 ~~~~~~~~~~lS~G~~----qr~~la~al~~~p~lliLDE~~~p~~~-------lD~~~-~~l~~ll~~-~~~~~~~ii~ 214 (302)
..........+|+|++ ||++++++++.+|.++++|| |+.+ +|... ..+.+.+.+ ..+.|.+++.
T Consensus 80 ~~~~~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de---~~~~~~d~~i~ld~~~~~~~~r~l~r~~~~~g~t~~~ 156 (211)
T 3asz_A 80 GLPVEMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPK---ELRDLMDLKVFVDADADERFIRRLKRDVLERGRSLEG 156 (211)
T ss_dssp TCCEEECCEETTTTEECSSCEEECCCSEEEEESTTTTSSH---HHHTTCSEEEEEECCHHHHHHHHHHHHHHHSCCCHHH
T ss_pred CCCcCCCcccCcccCCCCCeEEeCCCcEEEEeehhhccCH---HHHHhcCEEEEEeCCHHHHHHHHHHHHHHHhCCCHHH
Confidence 1111223456888864 67889999999999999999 8888 78544 444454443 2334677777
Q ss_pred EecCH
Q psy2071 215 ATLDA 219 (302)
Q Consensus 215 ~thd~ 219 (302)
++|+.
T Consensus 157 ~~~~~ 161 (211)
T 3asz_A 157 VVAQY 161 (211)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88874
No 120
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.26 E-value=7.2e-12 Score=102.95 Aligned_cols=78 Identities=14% Similarity=0.038 Sum_probs=64.1
Q ss_pred ccccccccCHHHHHHHhccccCCC----CCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhh
Q psy2071 151 PKTVLKYMTDGMLLREGMSDPMLE----NYQVILLDEAHERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQY 225 (302)
Q Consensus 151 ~~~~~~~lS~G~~qr~~la~al~~----~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~ 225 (302)
....+..|||||+||++||++++. .|+++|||| |++++|+.. ..+.+++...... .++|++||+.. +..+
T Consensus 58 ~~~~~~~LSgGekqr~ala~~la~~~~~~~~~llLDE---p~a~LD~~~~~~~~~~l~~~~~~-~~~ivith~~~-~~~~ 132 (173)
T 3kta_B 58 DVKRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDE---IDAHLDDANVKRVADLIKESSKE-SQFIVITLRDV-MMAN 132 (173)
T ss_dssp SCCCGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEES---TTTTCCHHHHHHHHHHHHHHTTT-SEEEEECSCHH-HHTT
T ss_pred cccccccCCHHHHHHHHHHHHHHhcccCCCCEEEECC---CccCCCHHHHHHHHHHHHHhccC-CEEEEEEecHH-HHHh
Confidence 345678899999999999999974 469999999 999999877 7788888766543 46777799975 4579
Q ss_pred ccCCCeee
Q psy2071 226 FDNAPLMN 233 (302)
Q Consensus 226 ~d~~~~l~ 233 (302)
||+++.+.
T Consensus 133 ad~i~~v~ 140 (173)
T 3kta_B 133 ADKIIGVS 140 (173)
T ss_dssp CSEEEEEE
T ss_pred CCEEEEEE
Confidence 99998876
No 121
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.23 E-value=2e-12 Score=124.20 Aligned_cols=75 Identities=15% Similarity=0.038 Sum_probs=65.9
Q ss_pred ccccc-CHHHHHHHhccccCCCCC--cEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCC
Q psy2071 154 VLKYM-TDGMLLREGMSDPMLENY--QVILLDEAHERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNA 229 (302)
Q Consensus 154 ~~~~l-S~G~~qr~~la~al~~~p--~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~ 229 (302)
.+..| ||||+||++||++|+.+| ++||||| |++++|+.. ..+.+++....+ +.+||++||+++.+. +||++
T Consensus 393 ~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDE---p~~gld~~~~~~i~~~l~~~~~-~~~vi~itH~~~~~~-~~d~~ 467 (517)
T 4ad8_A 393 PLSDVASGGELSRVMLAVSTVLGADTPSVVFDE---VDAGIGGAAAIAVAEQLSRLAD-TRQVLVVTHLAQIAA-RAHHH 467 (517)
T ss_dssp BSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECS---CSSSCCTHHHHHHHHHHHHHHH-HSEEEEECCCHHHHH-HSSEE
T ss_pred cHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeC---CcCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHHHHH-hCCEE
Confidence 44557 999999999999999999 9999999 999999777 777788776655 789999999998775 79999
Q ss_pred Ceee
Q psy2071 230 PLMN 233 (302)
Q Consensus 230 ~~l~ 233 (302)
++|+
T Consensus 468 ~~~~ 471 (517)
T 4ad8_A 468 YKVE 471 (517)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 9997
No 122
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.21 E-value=1.1e-13 Score=115.25 Aligned_cols=149 Identities=9% Similarity=0.013 Sum_probs=81.3
Q ss_pred CCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhh---hHH----------HHHHHhhhhhccccccceeeee
Q psy2071 77 NQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRV---AAM----------SVAQRVSEEMDCQLGQEVGYSI 143 (302)
Q Consensus 77 g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~---~~~----------~~~~~~~~~~~~~~~~~v~~~~ 143 (302)
|++++|+|||||||||+++.|++ +..|.+.+.+...... +.. .....+...............+
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~il 78 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIINHMVVGGYRPPWESDELLALTWKNITDLTVNFLLAQNDVVL 78 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHHTTCCTTCCCGGGCHHHHHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchhhhhccccccCccchhHHHHHHHHHHHHHHHHHhcCCcEEE
Confidence 67999999999999999999986 5667788876543210 000 0000000000000000000111
Q ss_pred eecCCCCcccccccc--CHHHHHHHhccc------cCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEE
Q psy2071 144 RFEDCSSPKTVLKYM--TDGMLLREGMSD------PMLENYQVILLDEAHERTLATDILM-GVLKEVIKQRADLKLVIMS 214 (302)
Q Consensus 144 ~~~~~~~~~~~~~~l--S~G~~qr~~la~------al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~ 214 (302)
...........+..+ |+|+++++.++. +++.++....+|+ ++|+.. .. .+.+......+.+++.
T Consensus 79 d~~~~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~------~ld~~~~~~-~~~~~~~~~~~~~ii~ 151 (189)
T 2bdt_A 79 DYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE------QMGERCLEL-VEEFESKGIDERYFYN 151 (189)
T ss_dssp ESCCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC----------CGGGGHH-HHHHHHTTCCTTSEEE
T ss_pred eeccCHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc------cCCHHHHHH-HHHHhhcCCCccEEEe
Confidence 110000011122334 788888877776 6777777666665 344322 33 4444444444678888
Q ss_pred EecC-HHHHHhhccCCCeeeecCcC
Q psy2071 215 ATLD-AGKFQQYFDNAPLMNVPGRT 238 (302)
Q Consensus 215 ~thd-~~~~~~~~d~~~~l~i~g~~ 238 (302)
+||. ++.+.++||+|. + .|+.
T Consensus 152 tsh~~~~~~e~~~~~i~--~-~g~~ 173 (189)
T 2bdt_A 152 TSHLQPTNLNDIVKNLK--T-NPRF 173 (189)
T ss_dssp CSSSCGGGHHHHHHHHH--H-CGGG
T ss_pred CCCCChhhHHHHHHHHh--h-CCcE
Confidence 8998 999999999987 4 5653
No 123
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=99.19 E-value=3.1e-11 Score=107.73 Aligned_cols=136 Identities=20% Similarity=0.231 Sum_probs=82.7
Q ss_pred HhCCEEEEEccCCCCccchhhhhhhcccccCC-CEEEeecCchhhhHHHHHHHhhhhhccccccceeeeeeecCCCCccc
Q psy2071 75 AQNQCIVLVGETGSGKTTQIPQWCVEYSKSVG-AKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRFEDCSSPKT 153 (302)
Q Consensus 75 ~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 153 (302)
.+|++++|+|+|||||||++..|++.+.+..| .+.+.+.++.+.+............+ ... ..
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~g--------l~~--~~------ 166 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQ--------APL--EV------ 166 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTT--------CCC--CB------
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcC--------CCe--Ee------
Confidence 46899999999999999999999999998788 78888777765544333322221111 100 00
Q ss_pred cccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEE-EecCHHHHHhhccCCCee
Q psy2071 154 VLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILMGVLKEVIKQRADLKLVIMS-ATLDAGKFQQYFDNAPLM 232 (302)
Q Consensus 154 ~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~~~l~~ll~~~~~~~~~ii~-~thd~~~~~~~~d~~~~l 232 (302)
..+ +...+.++++ +.+|+++|+|.++...... ..+..+.+++......++++++ +||+.+.+.++++++..+
T Consensus 167 ---~~~-~~~l~~al~~--~~~~dlvIiDT~G~~~~~~-~~~~el~~~l~~~~~~~~~lVl~at~~~~~~~~~~~~~~~l 239 (296)
T 2px0_A 167 ---CYT-KEEFQQAKEL--FSEYDHVFVDTAGRNFKDP-QYIDELKETIPFESSIQSFLVLSATAKYEDMKHIVKRFSSV 239 (296)
T ss_dssp ---CSS-HHHHHHHHHH--GGGSSEEEEECCCCCTTSH-HHHHHHHHHSCCCTTEEEEEEEETTBCHHHHHHHTTTTSSS
T ss_pred ---cCC-HHHHHHHHHH--hcCCCEEEEeCCCCChhhH-HHHHHHHHHHhhcCCCeEEEEEECCCCHHHHHHHHHHHhcC
Confidence 011 2234556664 3899999999754332211 2222333333211122444444 699999999999887654
Q ss_pred e
Q psy2071 233 N 233 (302)
Q Consensus 233 ~ 233 (302)
.
T Consensus 240 ~ 240 (296)
T 2px0_A 240 P 240 (296)
T ss_dssp C
T ss_pred C
Confidence 4
No 124
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=99.19 E-value=2e-11 Score=109.35 Aligned_cols=110 Identities=21% Similarity=0.256 Sum_probs=76.4
Q ss_pred HHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhhccccccceeeeeeecCCCCccc
Q psy2071 74 LAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRFEDCSSPKT 153 (302)
Q Consensus 74 i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 153 (302)
..++++++|+|+|||||||++..+++.+.+..|.+.+.+.+..+.++.......... .+..+
T Consensus 101 ~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~--------~gl~~---------- 162 (306)
T 1vma_A 101 PEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGER--------VGATV---------- 162 (306)
T ss_dssp SSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHH--------HTCEE----------
T ss_pred CCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHH--------cCCcE----------
Confidence 457889999999999999999999999998888999988887766544332222111 11111
Q ss_pred cccccCHHHHHHH---hccccCCCCCcEEEEcCCCCCCcchHHHHHHHHHHHH
Q psy2071 154 VLKYMTDGMLLRE---GMSDPMLENYQVILLDEAHERTLATDILMGVLKEVIK 203 (302)
Q Consensus 154 ~~~~lS~G~~qr~---~la~al~~~p~lliLDE~~~p~~~lD~~~~~l~~ll~ 203 (302)
+...|+|+.+++ ++++++..+|+++|+||++. ....+.++..+.++..
T Consensus 163 -~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~-~~~~~~l~~eL~~l~~ 213 (306)
T 1vma_A 163 -ISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR-LHTKKNLMEELRKVHR 213 (306)
T ss_dssp -ECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC-CSCHHHHHHHHHHHHH
T ss_pred -EecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc-hhhHHHHHHHHHHHHH
Confidence 123467888887 78888999999999999643 2233344444544433
No 125
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.19 E-value=1.5e-11 Score=111.22 Aligned_cols=130 Identities=15% Similarity=0.115 Sum_probs=78.3
Q ss_pred HHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhh-------------cccccccee
Q psy2071 74 LAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEM-------------DCQLGQEVG 140 (302)
Q Consensus 74 i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~v~ 140 (302)
.++|++++|+|||||||||+++.|+|++.|+.|.+.+.+.+..+.+...+........ ..++.+++.
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~ 205 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQ 205 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHH
Confidence 3679999999999999999999999999999999999998876655433222111111 111222221
Q ss_pred eee---------eecCCC-CccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHHHHHHHHHHHcCCCcE
Q psy2071 141 YSI---------RFEDCS-SPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILMGVLKEVIKQRADLKL 210 (302)
Q Consensus 141 ~~~---------~~~~~~-~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~~~l~~ll~~~~~~~~ 210 (302)
+.. ...... ..... +.+...+++++..++.+++||. .+ +.|.. ..+..+-+ ..++
T Consensus 206 ~~~~~~~d~vliDtaG~~~~~~~l-------~~eL~~i~ral~~de~llvLDa---~t-~~~~~-~~~~~~~~---~~~i 270 (328)
T 3e70_C 206 HAKARGIDVVLIDTAGRSETNRNL-------MDEMKKIARVTKPNLVIFVGDA---LA-GNAIV-EQARQFNE---AVKI 270 (328)
T ss_dssp HHHHHTCSEEEEEECCSCCTTTCH-------HHHHHHHHHHHCCSEEEEEEEG---GG-TTHHH-HHHHHHHH---HSCC
T ss_pred HHHhccchhhHHhhccchhHHHHH-------HHHHHHHHHHhcCCCCEEEEec---HH-HHHHH-HHHHHHHH---hcCC
Confidence 110 000000 01111 2222347788888999999997 43 44433 23333322 2478
Q ss_pred EEEEEecC
Q psy2071 211 VIMSATLD 218 (302)
Q Consensus 211 ~ii~~thd 218 (302)
+++++||.
T Consensus 271 t~iilTKl 278 (328)
T 3e70_C 271 DGIILTKL 278 (328)
T ss_dssp CEEEEECG
T ss_pred CEEEEeCc
Confidence 88888994
No 126
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.19 E-value=2.7e-12 Score=104.00 Aligned_cols=51 Identities=16% Similarity=0.021 Sum_probs=45.7
Q ss_pred hHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCc
Q psy2071 64 FEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQP 115 (302)
Q Consensus 64 ~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~ 115 (302)
..+++++++.+++|++++|+||||||||||+++|+|++ |++|.+.+.+...
T Consensus 20 ~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i 70 (158)
T 1htw_A 20 KFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTL 70 (158)
T ss_dssp HHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTC
T ss_pred HHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEee
Confidence 34688999999999999999999999999999999999 9999988776543
No 127
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.18 E-value=3.9e-13 Score=125.31 Aligned_cols=118 Identities=12% Similarity=0.130 Sum_probs=60.7
Q ss_pred EEEEccCCCCccchhhhhhhcccccCC--CEEEeecCchhhhHH-HHHHHhhhhhccccccceeeeeeecCCCCccc---
Q psy2071 80 IVLVGETGSGKTTQIPQWCVEYSKSVG--AKAVACTQPRRVAAM-SVAQRVSEEMDCQLGQEVGYSIRFEDCSSPKT--- 153 (302)
Q Consensus 80 ~~liG~nGsGKSTll~~i~g~~~~~~G--~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--- 153 (302)
++|+|+||||||||+++++|...+..| .+.+........... ...+........++.+++++............
T Consensus 34 I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~~i~~ 113 (418)
T 2qag_C 34 LMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQPVID 113 (418)
T ss_dssp EEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------CHHHHH
T ss_pred EEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhHHHHHH
Confidence 399999999999999999998875444 221111110000000 00011111123456666665432211000000
Q ss_pred -cccccCHHHHHHHhccccCCCCCc---EEEEcCCCCCC-cchHHHH-HHHHH
Q psy2071 154 -VLKYMTDGMLLREGMSDPMLENYQ---VILLDEAHERT-LATDILM-GVLKE 200 (302)
Q Consensus 154 -~~~~lS~G~~qr~~la~al~~~p~---lliLDE~~~p~-~~lD~~~-~~l~~ 200 (302)
.-..++.++++|++|+++++.+|+ +|++|| |+ .++|+.- ..+..
T Consensus 114 ~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~lde---Pt~~~L~~~d~~~lk~ 163 (418)
T 2qag_C 114 YIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIA---PSGHGLKPLDIEFMKR 163 (418)
T ss_dssp HHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECC---C-CCSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEec---CcccCCCHHHHHHHHH
Confidence 012356778889999999999999 999999 98 6888765 34443
No 128
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.14 E-value=1.3e-12 Score=107.36 Aligned_cols=101 Identities=15% Similarity=0.050 Sum_probs=56.1
Q ss_pred CEEEEEccCCCCccchhhhhhhccccc---CCCEEEeecCchhhh---HHHHH-HHhhhhhccccccceeeeee------
Q psy2071 78 QCIVLVGETGSGKTTQIPQWCVEYSKS---VGAKAVACTQPRRVA---AMSVA-QRVSEEMDCQLGQEVGYSIR------ 144 (302)
Q Consensus 78 ~i~~liG~nGsGKSTll~~i~g~~~~~---~G~~~i~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~v~~~~~------ 144 (302)
++++|+|+||||||||++.|++++.|+ .|.+.+++....... ..... ..+.........+...+...
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~i~~~~~~~~ 82 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAFIRRVSEEEG 82 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEEEEECCHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEEEecCChhhh
Confidence 589999999999999999999999998 788888876533221 01111 11110000000001111000
Q ss_pred --e----cC-CCCccc-cccccCHHHHHHHhccccCCCCCcE
Q psy2071 145 --F----ED-CSSPKT-VLKYMTDGMLLREGMSDPMLENYQV 178 (302)
Q Consensus 145 --~----~~-~~~~~~-~~~~lS~G~~qr~~la~al~~~p~l 178 (302)
. .. ....++ ..+.||+||+||+++|||++.+|++
T Consensus 83 a~l~~~i~~~l~g~dt~i~EglSgGq~qri~lARall~~p~i 124 (171)
T 2f1r_A 83 NDLDWIYERYLSDYDLVITEGFSKAGKDRIVVVKKPEEVEHF 124 (171)
T ss_dssp TCHHHHHHHHTTTCSEEEEESCGGGCCCEEEECSSGGGGGGG
T ss_pred hCHHHHHHhhCCCCCEEEECCcCCCCCcEEEEEecccCCCcc
Confidence 0 00 011222 2334999999999999999999876
No 129
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.13 E-value=1.5e-11 Score=116.04 Aligned_cols=49 Identities=22% Similarity=0.253 Sum_probs=42.4
Q ss_pred HHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhh
Q psy2071 70 FMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRV 118 (302)
Q Consensus 70 i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~ 118 (302)
+++.+.+|++++|+|+||||||||+++|+|++.++.|.+.+.+.+..+.
T Consensus 286 Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~ 334 (503)
T 2yhs_A 286 LNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRA 334 (503)
T ss_dssp CCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCH
T ss_pred ceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccch
Confidence 3445678999999999999999999999999999999999987766543
No 130
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.11 E-value=4.5e-12 Score=105.28 Aligned_cols=103 Identities=14% Similarity=0.090 Sum_probs=61.3
Q ss_pred HHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhh-------hH--------HHHHHHhhhhhcccccc
Q psy2071 73 LLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRV-------AA--------MSVAQRVSEEMDCQLGQ 137 (302)
Q Consensus 73 ~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~-------~~--------~~~~~~~~~~~~~~~~~ 137 (302)
.+++|++++|+|+|||||||++++|++. ++.|.+.+.+.+.... .. ..+...+..... ...
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~-~~~- 80 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQQNRMIMQIAADVAG-RYA- 80 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTCCSSCCCTTSSSHHHHHHHHHHHHHHHHH-HHH-
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhhhcccccCCccchhhhhHHHHHHHHHHHH-HHh-
Confidence 5789999999999999999999999997 6778888876432110 00 001111100000 000
Q ss_pred ceeeeeeecCC----C---Cc--cccccccCHHHHHHHhccccCCCCCcEE
Q psy2071 138 EVGYSIRFEDC----S---SP--KTVLKYMTDGMLLREGMSDPMLENYQVI 179 (302)
Q Consensus 138 ~v~~~~~~~~~----~---~~--~~~~~~lS~G~~qr~~la~al~~~p~ll 179 (302)
.-+.....+.. . .. +..+..+|+|++|+++++|++..+|+++
T Consensus 81 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~l 131 (191)
T 1zp6_A 81 KEGYFVILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSL 131 (191)
T ss_dssp HTSCEEEECSCCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSC
T ss_pred ccCCeEEEeccCcHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCcc
Confidence 00111111110 0 00 2234679999999999999999998765
No 131
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.08 E-value=1.2e-11 Score=103.94 Aligned_cols=128 Identities=10% Similarity=0.012 Sum_probs=69.8
Q ss_pred HHHHhCCEEEEEccCCCCccchhhhhhhcc-----cccCCCEEEee------------cCch---h------hhHHHHHH
Q psy2071 72 TLLAQNQCIVLVGETGSGKTTQIPQWCVEY-----SKSVGAKAVAC------------TQPR---R------VAAMSVAQ 125 (302)
Q Consensus 72 ~~i~~g~i~~liG~nGsGKSTll~~i~g~~-----~~~~G~~~i~~------------~~~~---~------~~~~~~~~ 125 (302)
+.+.+|..++|+|+||||||||++.++|.. .|+.|...+.+ +.-. . ........
T Consensus 21 ~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 100 (210)
T 1pui_A 21 LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAEVPEEMKRKWQRALG 100 (210)
T ss_dssp SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEECCCCC------CCHHHHHHHHH
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEEECcCCcccccCHHHHHHHHHHHH
Confidence 667899999999999999999999999987 67777543211 1000 0 00000011
Q ss_pred Hhhhhhccccccceeeeeee-----------------cCCC--CccccccccCHHHHHH-HhccccCCCCCcEEEEcCCC
Q psy2071 126 RVSEEMDCQLGQEVGYSIRF-----------------EDCS--SPKTVLKYMTDGMLLR-EGMSDPMLENYQVILLDEAH 185 (302)
Q Consensus 126 ~~~~~~~~~~~~~v~~~~~~-----------------~~~~--~~~~~~~~lS~G~~qr-~~la~al~~~p~lliLDE~~ 185 (302)
.+.+.... ...+.+.... .... ...+....+|+|++|+ +..+++++.+|..+++||
T Consensus 101 ~~~~~~~~--~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~-- 176 (210)
T 1pui_A 101 EYLEKRQS--LQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVE-- 176 (210)
T ss_dssp HHHHHCTT--EEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEE--
T ss_pred HHHHhhhc--ccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCceE--
Confidence 11110000 0000000000 0000 0123456699999999 788999999999999999
Q ss_pred CCCcchHHHH-HHHHHHHHH
Q psy2071 186 ERTLATDILM-GVLKEVIKQ 204 (302)
Q Consensus 186 ~p~~~lD~~~-~~l~~ll~~ 204 (302)
|++++|... ..+.+.+..
T Consensus 177 -~~Sal~~~~~~~l~~~l~~ 195 (210)
T 1pui_A 177 -TFSSLKKQGVDKLRQKLDT 195 (210)
T ss_dssp -ECBTTTTBSHHHHHHHHHH
T ss_pred -EEeecCCCCHHHHHHHHHH
Confidence 999998644 445555443
No 132
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=99.06 E-value=6.3e-11 Score=109.84 Aligned_cols=48 Identities=13% Similarity=0.159 Sum_probs=34.5
Q ss_pred HHHHH-HHHHhCCEEEEEccCCCCccchhhhhh--hcccccCC-----CEEEeecC
Q psy2071 67 RTEFM-TLLAQNQCIVLVGETGSGKTTQIPQWC--VEYSKSVG-----AKAVACTQ 114 (302)
Q Consensus 67 ~~~i~-~~i~~g~i~~liG~nGsGKSTll~~i~--g~~~~~~G-----~~~i~~~~ 114 (302)
++.+. --|++|++++|+||||||||||+.+++ +..+++.| .+++.+..
T Consensus 167 LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~ 222 (400)
T 3lda_A 167 LDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEG 222 (400)
T ss_dssp HHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred HHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCC
Confidence 44433 346899999999999999999999654 55555443 56666654
No 133
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.05 E-value=3.2e-12 Score=108.12 Aligned_cols=102 Identities=14% Similarity=0.044 Sum_probs=62.6
Q ss_pred HHhCCEEEEEccCCCCccchhhhhhhccccc---CCCEEEeecCchhhhHHHHH--H--Hhh----------hhhccccc
Q psy2071 74 LAQNQCIVLVGETGSGKTTQIPQWCVEYSKS---VGAKAVACTQPRRVAAMSVA--Q--RVS----------EEMDCQLG 136 (302)
Q Consensus 74 i~~g~i~~liG~nGsGKSTll~~i~g~~~~~---~G~~~i~~~~~~~~~~~~~~--~--~~~----------~~~~~~~~ 136 (302)
.++|++++|+||||||||||+++|+|++.|. .|.+.+++............ . .+. .......+
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 98 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHLDNRLLEPRGLLPRKGAPETFDFEGFQRLCHALKHQ 98 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGBCCHHHHGGGTCGGGTTSGGGBCHHHHHHHHHHHHHC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCcCCHHHHHHhcccccCCCCchhhHHHHHHHHHHHhcC
Confidence 3679999999999999999999999999864 45555554432111100000 0 000 00011222
Q ss_pred cceeeeeeecCCCCccccccccCHHHHHHHhcc-ccCCCCCcEEEEcC
Q psy2071 137 QEVGYSIRFEDCSSPKTVLKYMTDGMLLREGMS-DPMLENYQVILLDE 183 (302)
Q Consensus 137 ~~v~~~~~~~~~~~~~~~~~~lS~G~~qr~~la-~al~~~p~lliLDE 183 (302)
+++.+.... ....+|+|++|+++++ ++++.++.++++||
T Consensus 99 ~~i~~p~~d--------~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de 138 (208)
T 3c8u_A 99 ERVIYPLFD--------RARDIAIAGAAEVGPECRVAIIEGNYLLFDA 138 (208)
T ss_dssp SCEEEEEEE--------TTTTEEEEEEEEECTTCCEEEEEESSTTBCS
T ss_pred CceecccCC--------ccccCCCCCceEEcCCCcEEEECCceeccCC
Confidence 333333211 1123588999999998 88888988888999
No 134
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=99.04 E-value=9.5e-11 Score=100.85 Aligned_cols=162 Identities=9% Similarity=-0.007 Sum_probs=77.6
Q ss_pred HHHH-HHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhhccc-cccceeeeee
Q psy2071 67 RTEF-MTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQ-LGQEVGYSIR 144 (302)
Q Consensus 67 ~~~i-~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~ 144 (302)
++++ .--+++|++++|+|+|||||||++.+++....+..+.+.+................+....... ...++.+.-.
T Consensus 12 LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~ 91 (247)
T 2dr3_A 12 VDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEEHPVQVRQNMAQFGWDVKPYEEKGMFAMVDA 91 (247)
T ss_dssp HHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSSCHHHHHHHHHTTTCCCHHHHHHTSEEEEEC
T ss_pred HHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccCCHHHHHHHHHHcCCCHHHHhhCCcEEEEec
Confidence 3444 3357899999999999999999977766544444445555444322111111111111000000 0001110000
Q ss_pred ----ecCCCCccccc--cccCHHHHHHHhccccCC--CCCcEEEEcCCCCCCcch--HH--HHHHHHHHHHHcCCCcEEE
Q psy2071 145 ----FEDCSSPKTVL--KYMTDGMLLREGMSDPML--ENYQVILLDEAHERTLAT--DI--LMGVLKEVIKQRADLKLVI 212 (302)
Q Consensus 145 ----~~~~~~~~~~~--~~lS~G~~qr~~la~al~--~~p~lliLDE~~~p~~~l--D~--~~~~l~~ll~~~~~~~~~i 212 (302)
+.......... ...+-.+ ....++.++ .+|+++++|+ ++... |+ ....+..+.+..++.++++
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~vviD~---~~~l~~~~~~~~~~~l~~l~~~~~~~~~~v 166 (247)
T 2dr3_A 92 FTAGIGKSKEYEKYIVHDLTDIRE--FIEVLRQAIRDINAKRVVVDS---VTTLYINKPAMARSIILQLKRVLAGTGCTS 166 (247)
T ss_dssp STTTTCC--CCCSCBCSCCSSHHH--HHHHHHHHHHHHTCCEEEEET---SGGGTTTCGGGHHHHHHHHHHHHHHTTCEE
T ss_pred chhhcccccccccccccCccCHHH--HHHHHHHHHHHhCCCEEEECC---chHhhcCCHHHHHHHHHHHHHHHHHCCCeE
Confidence 00000000000 0011111 111111111 4799999999 44433 32 1244444444444568899
Q ss_pred EEEecCHHH--------HHhhccCCCeee
Q psy2071 213 MSATLDAGK--------FQQYFDNAPLMN 233 (302)
Q Consensus 213 i~~thd~~~--------~~~~~d~~~~l~ 233 (302)
++++|.... +.++||.++.|+
T Consensus 167 i~~~h~~~~~~~~~~~~~~~~~D~vi~L~ 195 (247)
T 2dr3_A 167 IFVSQVSVGERGFGGPGVEHGVDGIIRLD 195 (247)
T ss_dssp EEEEECC----CCC-CCHHHHSSEEEEEE
T ss_pred EEEecCCCCcccccccccceeEEEEEEEE
Confidence 999997765 578899998887
No 135
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.03 E-value=2.5e-10 Score=103.68 Aligned_cols=51 Identities=18% Similarity=0.201 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCc
Q psy2071 65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQP 115 (302)
Q Consensus 65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~ 115 (302)
.+++++++.+.+|++++|+|+||||||||+++++|++.|+.|.+.+.+.++
T Consensus 43 ~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~ 93 (337)
T 2qm8_A 43 DLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDP 93 (337)
T ss_dssp HHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECG
T ss_pred HHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcC
Confidence 468899999999999999999999999999999999999999999988765
No 136
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.02 E-value=1.7e-10 Score=106.07 Aligned_cols=80 Identities=16% Similarity=0.243 Sum_probs=65.5
Q ss_pred ccccccCHHHHHHH------hccccCCCC-CcEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHh
Q psy2071 153 TVLKYMTDGMLLRE------GMSDPMLEN-YQVILLDEAHERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQ 224 (302)
Q Consensus 153 ~~~~~lS~G~~qr~------~la~al~~~-p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~ 224 (302)
..+..||+||+||+ ++|++++.+ |++||||| |++++|+.. ..+.+++....+. .+|+++||+.+ +..
T Consensus 276 ~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDE---p~~~LD~~~~~~l~~~l~~~~~~-~~vi~~th~~~-~~~ 350 (371)
T 3auy_A 276 LTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDE---PTVYLDENRRAKLAEIFRKVKSI-PQMIIITHHRE-LED 350 (371)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEES---TTTTCCHHHHHHHHHHHHHCCSC-SEEEEEESCGG-GGG
T ss_pred cchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeC---CCCcCCHHHHHHHHHHHHHhccC-CeEEEEEChHH-HHh
Confidence 34568999999988 457888999 99999999 999999877 7788888776443 47888999986 678
Q ss_pred hccCCCeeeecCc
Q psy2071 225 YFDNAPLMNVPGR 237 (302)
Q Consensus 225 ~~d~~~~l~i~g~ 237 (302)
+||++++|+-.|.
T Consensus 351 ~~d~~~~l~k~~~ 363 (371)
T 3auy_A 351 VADVIINVKKDGN 363 (371)
T ss_dssp GCSEEEEEEESSS
T ss_pred hCCEEEEEEecCC
Confidence 9999999985444
No 137
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.02 E-value=2e-10 Score=107.67 Aligned_cols=76 Identities=16% Similarity=0.154 Sum_probs=64.7
Q ss_pred cccCHHHHHHHhccccCC----CCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCC
Q psy2071 156 KYMTDGMLLREGMSDPML----ENYQVILLDEAHERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAP 230 (302)
Q Consensus 156 ~~lS~G~~qr~~la~al~----~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~ 230 (302)
..||+||+++++||++|+ .+|+++|||| |++++|+.. ..+.+++......+.+++++||+.. +...||+++
T Consensus 332 ~~lS~Gq~~~~~la~~la~~~~~~~~~lllDE---p~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~-~~~~~d~~~ 407 (430)
T 1w1w_A 332 EYLSGGEKTVAALALLFAINSYQPSPFFVLDE---VDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNT-MFEKSDALV 407 (430)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESS---TTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHH-HHTTCSEEE
T ss_pred ccCCcchHHHHHHHHHHHHhcCCCCCEEEeCC---CcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHH-HHHhCCEEE
Confidence 459999999999999998 6899999999 999999887 7788888776544788999999965 567899999
Q ss_pred eeeec
Q psy2071 231 LMNVP 235 (302)
Q Consensus 231 ~l~i~ 235 (302)
+|...
T Consensus 408 ~~~~~ 412 (430)
T 1w1w_A 408 GVYRQ 412 (430)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 98743
No 138
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=99.01 E-value=5.9e-10 Score=99.34 Aligned_cols=112 Identities=23% Similarity=0.219 Sum_probs=75.6
Q ss_pred hCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhhccccccceeeeeeecCCCCccccc
Q psy2071 76 QNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRFEDCSSPKTVL 155 (302)
Q Consensus 76 ~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 155 (302)
+|++++++|+|||||||++..+++.+.+..|.+.+.+.++++.....+...+.... +..+--...
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~--------~l~~~~~~~------- 161 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKV--------GVPVLEVMD------- 161 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHH--------TCCEEECCT-------
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccC--------CeEEEEcCC-------
Confidence 78999999999999999999999999988899999998877655443222221111 111100000
Q ss_pred cccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHc
Q psy2071 156 KYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVIKQR 205 (302)
Q Consensus 156 ~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~ 205 (302)
.......+|.+++.+...+++++|+||+ |+.++|... ..+.++....
T Consensus 162 -~~~p~~l~~~~l~~~~~~~~D~viiDtp--p~~~~d~~~~~~l~~~~~~~ 209 (295)
T 1ls1_A 162 -GESPESIRRRVEEKARLEARDLILVDTA--GRLQIDEPLMGELARLKEVL 209 (295)
T ss_dssp -TCCHHHHHHHHHHHHHHHTCCEEEEECC--CCSSCCHHHHHHHHHHHHHH
T ss_pred -CCCHHHHHHHHHHHHHhCCCCEEEEeCC--CCccccHHHHHHHHHHhhhc
Confidence 0122345678888877789999999993 388888544 5555555543
No 139
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.01 E-value=9.3e-11 Score=107.18 Aligned_cols=74 Identities=18% Similarity=0.052 Sum_probs=63.1
Q ss_pred ccc-ccCHHHHHHHhccccCC---------CCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHH
Q psy2071 154 VLK-YMTDGMLLREGMSDPML---------ENYQVILLDEAHERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKF 222 (302)
Q Consensus 154 ~~~-~lS~G~~qr~~la~al~---------~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~ 222 (302)
.+. ++|+||+||++||++|+ .+|++||||| |++++|+.. ..+.+++.... .|+|++||. +.
T Consensus 261 ~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDE---p~s~LD~~~~~~l~~~l~~~~---qt~i~~th~-~~- 332 (359)
T 2o5v_A 261 PASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDD---FTAELDPHRRQYLLDLAASVP---QAIVTGTEL-AP- 332 (359)
T ss_dssp EHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECC---GGGCCCHHHHHHHHHHHHHSS---EEEEEESSC-CT-
T ss_pred chhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeC---ccccCCHHHHHHHHHHHHhcC---cEEEEEEec-cc-
Confidence 455 69999999999999999 8999999999 999999887 77888887653 699999994 43
Q ss_pred HhhccCCCeeeecCcC
Q psy2071 223 QQYFDNAPLMNVPGRT 238 (302)
Q Consensus 223 ~~~~d~~~~l~i~g~~ 238 (302)
+||++.+|+ .|+.
T Consensus 333 --~~~~i~~l~-~G~i 345 (359)
T 2o5v_A 333 --GAALTLRAQ-AGRF 345 (359)
T ss_dssp --TCSEEEEEE-TTEE
T ss_pred --cCCEEEEEE-CCEE
Confidence 899999998 6654
No 140
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.99 E-value=1.6e-10 Score=105.05 Aligned_cols=136 Identities=10% Similarity=0.100 Sum_probs=67.2
Q ss_pred EEEEEccCCCCccchhhhhhh-cccccCCCEEEeecCchhhhHHHHHHHhhhhhccccccceeeeeeecCCCCccccccc
Q psy2071 79 CIVLVGETGSGKTTQIPQWCV-EYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRFEDCSSPKTVLKY 157 (302)
Q Consensus 79 i~~liG~nGsGKSTll~~i~g-~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 157 (302)
.+.|.||||+||||+++.+++ ++.++.|.+.+.+......... ...+..... .. .+.+...... .
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~--~~~~~~~~~----~~---~~~~~~~~~~-----~ 103 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNR--KLELNVVSS----PY---HLEITPSDMG-----N 103 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHHSCTTCCC--------------------CCEEC----SS---EEEECCC---------
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccc--cceeeeecc----cc---eEEecHhhcC-----C
Confidence 489999999999999999999 7888889888876542211000 000000000 00 0111100000 0
Q ss_pred cCHH-HHH---HHhcc---------ccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHH-
Q psy2071 158 MTDG-MLL---REGMS---------DPMLENYQVILLDEAHERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKF- 222 (302)
Q Consensus 158 lS~G-~~q---r~~la---------~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~- 222 (302)
-... .+. .+... ..+..+|+++|+|| ++. +|... ..+.++++.... +.++|++||+.+.+
T Consensus 104 ~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE---~~~-L~~~~~~~L~~~le~~~~-~~~~Il~t~~~~~l~ 178 (354)
T 1sxj_E 104 NDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINE---ANS-LTKDAQAALRRTMEKYSK-NIRLIMVCDSMSPII 178 (354)
T ss_dssp CCHHHHHHHHHHHTTTTC------------CCEEEEEEC---TTS-SCHHHHHHHHHHHHHSTT-TEEEEEEESCSCSSC
T ss_pred cchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeC---ccc-cCHHHHHHHHHHHHhhcC-CCEEEEEeCCHHHHH
Confidence 0000 011 11111 11467899999999 666 77655 667777776544 68899999986542
Q ss_pred HhhccCCCeee
Q psy2071 223 QQYFDNAPLMN 233 (302)
Q Consensus 223 ~~~~d~~~~l~ 233 (302)
..+.+|+..++
T Consensus 179 ~~l~sR~~~~~ 189 (354)
T 1sxj_E 179 APIKSQCLLIR 189 (354)
T ss_dssp HHHHTTSEEEE
T ss_pred HHHHhhceEEe
Confidence 33445554444
No 141
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=98.99 E-value=1.3e-09 Score=108.33 Aligned_cols=198 Identities=18% Similarity=0.112 Sum_probs=115.4
Q ss_pred CCCCCCChhhHHHHHhhcCCChhHHHHHHHHH-HHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhH
Q psy2071 42 FTGYPYTPRYHELHRKRITLPVFEYRTEFMTL-LAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAA 120 (302)
Q Consensus 42 ~~~~~~~~~~~~l~~~r~~lp~~~~~~~i~~~-i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~ 120 (302)
|..++..+...+..+.+.--..+.+....... +..|+.+.+.||+||||||...+.+...-...|. .+....|.+.-+
T Consensus 10 ~~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~-~il~i~P~r~La 88 (715)
T 2va8_A 10 IEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKNGG-KAIYVTPLRALT 88 (715)
T ss_dssp GGGSSSCHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCS-EEEEECSCHHHH
T ss_pred HHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHCCC-eEEEEeCcHHHH
Confidence 33444445555544432111223344444445 7789999999999999999976554321111232 334456766555
Q ss_pred HHHHHHhh--hhhccccccceeeeeeecCCCCccccccccCHHHHHHHhccccC-CCCCcEEEEcCCCCCCcchHHHHHH
Q psy2071 121 MSVAQRVS--EEMDCQLGQEVGYSIRFEDCSSPKTVLKYMTDGMLLREGMSDPM-LENYQVILLDEAHERTLATDILMGV 197 (302)
Q Consensus 121 ~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~lS~G~~qr~~la~al-~~~p~lliLDE~~~p~~~lD~~~~~ 197 (302)
.....++. ...+..++..+|+..+.... .....+...|.|...++...... +.+.+++|+||+|+-.. .+ ....
T Consensus 89 ~q~~~~~~~~~~~g~~v~~~~G~~~~~~~~-~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~-~~-~~~~ 165 (715)
T 2va8_A 89 NEKYLTFKDWELIGFKVAMTSGDYDTDDAW-LKNYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDELHYLND-PE-RGPV 165 (715)
T ss_dssp HHHHHHHGGGGGGTCCEEECCSCSSSCCGG-GGGCSEEEECHHHHHHHHHHCCGGGGGEEEEEECSGGGGGC-TT-THHH
T ss_pred HHHHHHHHHhhcCCCEEEEEeCCCCCchhh-cCCCCEEEEcHHHHHHHHhCChhHhhccCEEEEechhhcCC-cc-cchH
Confidence 55555442 12234444444443333221 12556778899988887665554 78999999999998321 11 1123
Q ss_pred HHHHHHHcCCCcEEEEEEecC-HHHHHhhccCCCeeeecCcCCcccee
Q psy2071 198 LKEVIKQRADLKLVIMSATLD-AGKFQQYFDNAPLMNVPGRTHPVEIF 244 (302)
Q Consensus 198 l~~ll~~~~~~~~~ii~~thd-~~~~~~~~d~~~~l~i~g~~~~~~~~ 244 (302)
+..++.......++++++|-+ .+.+.++.+ +.++...++..|++..
T Consensus 166 l~~i~~~~~~~~ii~lSATl~n~~~~~~~l~-~~~~~~~~r~~~l~~~ 212 (715)
T 2va8_A 166 VESVTIRAKRRNLLALSATISNYKQIAKWLG-AEPVATNWRPVPLIEG 212 (715)
T ss_dssp HHHHHHHHHTSEEEEEESCCTTHHHHHHHHT-CEEEECCCCSSCEEEE
T ss_pred HHHHHHhcccCcEEEEcCCCCCHHHHHHHhC-CCccCCCCCCCCceEE
Confidence 333443333668999999985 778888775 4445556777776543
No 142
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.99 E-value=5.7e-11 Score=108.26 Aligned_cols=44 Identities=11% Similarity=0.129 Sum_probs=35.1
Q ss_pred HHHHHHHHHhCCEEEEEccCCCCccchhhhhhhccc-ccCCCEEEe
Q psy2071 67 RTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYS-KSVGAKAVA 111 (302)
Q Consensus 67 ~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~-~~~G~~~i~ 111 (302)
.++++..+ +|++++|+|+||||||||+++|+|+.. +..|.+.+.
T Consensus 206 l~~L~~~~-~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~ 250 (358)
T 2rcn_A 206 LKPLEEAL-TGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNV 250 (358)
T ss_dssp HHHHHHHH-TTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-----
T ss_pred HHHHHHhc-CCCEEEEECCCCccHHHHHHHHhccccccccCCcccc
Confidence 56666654 899999999999999999999999999 999998775
No 143
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=98.98 E-value=1e-11 Score=107.63 Aligned_cols=37 Identities=24% Similarity=0.129 Sum_probs=32.8
Q ss_pred hCCEEEEEccCCCCccchhhhhh---hcccccCCCEEEee
Q psy2071 76 QNQCIVLVGETGSGKTTQIPQWC---VEYSKSVGAKAVAC 112 (302)
Q Consensus 76 ~g~i~~liG~nGsGKSTll~~i~---g~~~~~~G~~~i~~ 112 (302)
++++++|+|+||||||||+++|+ |+..++.|.+.+.+
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~ 65 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLREN 65 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHH
Confidence 57999999999999999999999 99888888776554
No 144
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.97 E-value=1.2e-11 Score=103.80 Aligned_cols=28 Identities=36% Similarity=0.479 Sum_probs=23.9
Q ss_pred HhCCEEEEEccCCCCccchhhhhhhccc
Q psy2071 75 AQNQCIVLVGETGSGKTTQIPQWCVEYS 102 (302)
Q Consensus 75 ~~g~i~~liG~nGsGKSTll~~i~g~~~ 102 (302)
++|++++|+||||||||||+++|+|+++
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 5789999999999999999999999875
No 145
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.97 E-value=9.4e-11 Score=105.16 Aligned_cols=45 Identities=13% Similarity=0.049 Sum_probs=41.2
Q ss_pred HHHHHHHHH-------------------HhCCEEEEEccCCCCccchhhhhhhccc--ccCCCEEE
Q psy2071 66 YRTEFMTLL-------------------AQNQCIVLVGETGSGKTTQIPQWCVEYS--KSVGAKAV 110 (302)
Q Consensus 66 ~~~~i~~~i-------------------~~g~i~~liG~nGsGKSTll~~i~g~~~--~~~G~~~i 110 (302)
+.+++++.+ .+|++++|+|+||||||||+++|+|++. |++|.+.+
T Consensus 50 ~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~v 115 (308)
T 1sq5_A 50 LSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVEL 115 (308)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEE
T ss_pred HHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEE
Confidence 567777777 8899999999999999999999999988 99999998
No 146
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.92 E-value=1.3e-10 Score=108.04 Aligned_cols=35 Identities=31% Similarity=0.389 Sum_probs=32.5
Q ss_pred HHHHHHHHHhCCE--EEEEccCCCCccchhhhhhhcc
Q psy2071 67 RTEFMTLLAQNQC--IVLVGETGSGKTTQIPQWCVEY 101 (302)
Q Consensus 67 ~~~i~~~i~~g~i--~~liG~nGsGKSTll~~i~g~~ 101 (302)
++++++.+++|++ ++|+|+||||||||+++|+|+.
T Consensus 30 L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~ 66 (427)
T 2qag_B 30 DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK 66 (427)
T ss_dssp HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC
T ss_pred cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc
Confidence 7899999999999 9999999999999999999974
No 147
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.91 E-value=2.7e-11 Score=106.90 Aligned_cols=113 Identities=15% Similarity=0.053 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhh--h-----HHHHHHHh-hhhhccccc
Q psy2071 65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRV--A-----AMSVAQRV-SEEMDCQLG 136 (302)
Q Consensus 65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~--~-----~~~~~~~~-~~~~~~~~~ 136 (302)
...+++++.+++| ++|+||||||||||+++++|...+ |.+.+.|.+.... + ...+.+.. ...+...+.
T Consensus 34 ~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~~ 109 (274)
T 2x8a_A 34 DQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFF 109 (274)
T ss_dssp HHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEEEE
T ss_pred HHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeEee
Confidence 3466777777788 999999999999999999998765 5777777553211 0 11111111 011122333
Q ss_pred cceeeeeeecC-------CCCccccccccCHHHHHHHhccccCCCCCcEEEEcC
Q psy2071 137 QEVGYSIRFED-------CSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDE 183 (302)
Q Consensus 137 ~~v~~~~~~~~-------~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE 183 (302)
+++........ ....+..+..|||||+||+.+++++..+|++| ||
T Consensus 110 Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~L--D~ 161 (274)
T 2x8a_A 110 DEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDII--DP 161 (274)
T ss_dssp ETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGS--CH
T ss_pred ehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhC--CH
Confidence 33332111000 00113345679999999999999999999975 88
No 148
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.87 E-value=2e-11 Score=113.62 Aligned_cols=111 Identities=15% Similarity=0.108 Sum_probs=64.2
Q ss_pred HHHHHHHHhCCEEEEEccCCCCccchhhhhhhcc-----------cccCCCEEEee-cC------chhhhHHHHHHHhhh
Q psy2071 68 TEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEY-----------SKSVGAKAVAC-TQ------PRRVAAMSVAQRVSE 129 (302)
Q Consensus 68 ~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~-----------~~~~G~~~i~~-~~------~~~~~~~~~~~~~~~ 129 (302)
+++++.++.++.++|+|+|||||||||+++++.. .|..|.+.+.+ .. +...........+..
T Consensus 148 ~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~ 227 (416)
T 1udx_A 148 RRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGL 227 (416)
T ss_dssp EEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCH
T ss_pred eeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCcceEEEEeccccccchhhhhhhhH
Confidence 4567788999999999999999999999999973 23333332221 00 000000000000000
Q ss_pred hhccccccceeeeeeecCCCCccccccccCHHHHHHHhccccCCCCCcEEEE
Q psy2071 130 EMDCQLGQEVGYSIRFEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILL 181 (302)
Q Consensus 130 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliL 181 (302)
.+. ...+.....+...+.. ...+..+|+|++|++.++++|+..|.+|++
T Consensus 228 ~fl-~~~era~~lL~vvDls--~~~~~~ls~g~~el~~la~aL~~~P~ILVl 276 (416)
T 1udx_A 228 EFL-RHIARTRVLLYVLDAA--DEPLKTLETLRKEVGAYDPALLRRPSLVAL 276 (416)
T ss_dssp HHH-HHHTSSSEEEEEEETT--SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE
T ss_pred HHH-HHHHHHHhhhEEeCCc--cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE
Confidence 000 0000111111111111 456678999999999999999999999999
No 149
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.81 E-value=8.4e-11 Score=111.06 Aligned_cols=51 Identities=14% Similarity=0.116 Sum_probs=46.6
Q ss_pred hHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCc
Q psy2071 64 FEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQP 115 (302)
Q Consensus 64 ~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~ 115 (302)
|.+++++++.|++ ++++|+||||||||||+++|+|+++|++|.+.+.|...
T Consensus 17 ~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~ 67 (483)
T 3euj_A 17 WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTE 67 (483)
T ss_dssp ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTS
T ss_pred cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEc
Confidence 5556788999999 99999999999999999999999999999999988754
No 150
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=98.81 E-value=9.5e-09 Score=102.04 Aligned_cols=174 Identities=14% Similarity=0.105 Sum_probs=102.6
Q ss_pred HHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhh--hhccccccceeeeeee
Q psy2071 68 TEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSE--EMDCQLGQEVGYSIRF 145 (302)
Q Consensus 68 ~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~~ 145 (302)
..+...+..|+.+.+.||+|||||+...+.+...-...|.+.+ ..|.+.-+......+.. ..+..++..+|+....
T Consensus 31 ~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~l~--i~P~r~La~q~~~~~~~~~~~g~~v~~~~G~~~~~ 108 (702)
T 2p6r_A 31 AEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIKGGKSLY--VVPLRALAGEKYESFKKWEKIGLRIGISTGDYESR 108 (702)
T ss_dssp HHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHTTCCEEE--EESSHHHHHHHHHHHTTTTTTTCCEEEECSSCBCC
T ss_pred HHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHhCCcEEE--EeCcHHHHHHHHHHHHHHHhcCCEEEEEeCCCCcc
Confidence 3344447789999999999999999864443211112344433 44655444444444421 1233444444443333
Q ss_pred cCCCCccccccccCHHHHHHHhccccC-CCCCcEEEEcCCCCCCc-chHHHHHH-HHHHHHHcCCCcEEEEEEecC-HHH
Q psy2071 146 EDCSSPKTVLKYMTDGMLLREGMSDPM-LENYQVILLDEAHERTL-ATDILMGV-LKEVIKQRADLKLVIMSATLD-AGK 221 (302)
Q Consensus 146 ~~~~~~~~~~~~lS~G~~qr~~la~al-~~~p~lliLDE~~~p~~-~lD~~~~~-l~~ll~~~~~~~~~ii~~thd-~~~ 221 (302)
... .....+...|.|+..++...... +.+.+++|+||+|+-.. +-...... +..+........++++++|.+ .+.
T Consensus 109 ~~~-~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~~~~~~~ii~lSATl~n~~~ 187 (702)
T 2p6r_A 109 DEH-LGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLDSEKRGATLEILVTKMRRMNKALRVIGLSATAPNVTE 187 (702)
T ss_dssp SSC-STTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGGGGCTTTHHHHHHHHHHHHHHCTTCEEEEEECCCTTHHH
T ss_pred hhh-ccCCCEEEECHHHHHHHHHcChhHHhhcCEEEEeeeeecCCCCcccHHHHHHHHHHhcCcCceEEEECCCcCCHHH
Confidence 221 22456777888988876665544 78999999999997221 11122222 222222334568899999976 778
Q ss_pred HHhhccCCCeeeecCcCCccceee
Q psy2071 222 FQQYFDNAPLMNVPGRTHPVEIFY 245 (302)
Q Consensus 222 ~~~~~d~~~~l~i~g~~~~~~~~~ 245 (302)
+.++.+ +.++...++..|++..+
T Consensus 188 ~~~~l~-~~~~~~~~r~~~l~~~~ 210 (702)
T 2p6r_A 188 IAEWLD-ADYYVSDWRPVPLVEGV 210 (702)
T ss_dssp HHHHTT-CEEEECCCCSSCEEEEE
T ss_pred HHHHhC-CCcccCCCCCccceEEE
Confidence 888776 44556677777776543
No 151
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=98.80 E-value=1.8e-10 Score=102.35 Aligned_cols=30 Identities=23% Similarity=0.192 Sum_probs=26.4
Q ss_pred HhCCEEEEEccCCCCccchhhhhhhccccc
Q psy2071 75 AQNQCIVLVGETGSGKTTQIPQWCVEYSKS 104 (302)
Q Consensus 75 ~~g~i~~liG~nGsGKSTll~~i~g~~~~~ 104 (302)
..+.+++|+|++||||||+.+.|.+++.+.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~ 58 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEK 58 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 356799999999999999999999988763
No 152
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.79 E-value=1.7e-10 Score=106.49 Aligned_cols=56 Identities=7% Similarity=0.005 Sum_probs=44.2
Q ss_pred CC--cEEEEcCCCCCCcchHHHH-HHHHHHHHHc-CCCcEEEEEEecCHHHHHhhccCCC-eeeecC
Q psy2071 175 NY--QVILLDEAHERTLATDILM-GVLKEVIKQR-ADLKLVIMSATLDAGKFQQYFDNAP-LMNVPG 236 (302)
Q Consensus 175 ~p--~lliLDE~~~p~~~lD~~~-~~l~~ll~~~-~~~~~~ii~~thd~~~~~~~~d~~~-~l~i~g 236 (302)
+| ++.++|| ++...|+.. ....+.+... ...|.|++ +|++..+.++|+++. +|. .|
T Consensus 139 dP~~di~ilde---el~~~D~~~~~k~~~~l~~~~~~~g~ti~--sh~~~~~~~l~~~i~~~L~-~G 199 (392)
T 1ni3_A 139 DPIRDLSIIVD---ELLIKDAEFVEKHLEGLRKITSRGANTLE--MKAKKEEQAIIEKVYQYLT-ET 199 (392)
T ss_dssp CHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHTTCCSSCSSS--HHHHHHHHHHHHHHHHHHH-TT
T ss_pred Ccchhhhhchh---hhHHHHHHHHHHHHHHHHHHHHhcCCccc--cccHHHHHHHHHHHHHHhc-cC
Confidence 88 9999999 999999766 5556666655 55566654 999999999999987 776 56
No 153
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=98.73 E-value=6.1e-09 Score=99.47 Aligned_cols=50 Identities=20% Similarity=0.208 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecC
Q psy2071 65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQ 114 (302)
Q Consensus 65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~ 114 (302)
.+++++++.+++|++++|+|||||||||++++++|+++|+.|.+.+.+..
T Consensus 248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~ 297 (511)
T 2oap_1 248 GVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTR 297 (511)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSC
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcc
Confidence 35788999999999999999999999999999999999999999887753
No 154
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=98.72 E-value=1.5e-08 Score=100.86 Aligned_cols=195 Identities=13% Similarity=0.108 Sum_probs=105.1
Q ss_pred CCCCChhhHHHHHhhcCCChhHHHHHHHHH-HHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHH
Q psy2071 44 GYPYTPRYHELHRKRITLPVFEYRTEFMTL-LAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMS 122 (302)
Q Consensus 44 ~~~~~~~~~~l~~~r~~lp~~~~~~~i~~~-i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~ 122 (302)
..+..+.+.+..+.+.--.-+.+...+... +..|+.+.+.||+|||||+...+.+...-...|. .+....|.+.-+..
T Consensus 5 ~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~-~~l~i~P~raLa~q 83 (720)
T 2zj8_A 5 ELRVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQGG-KAVYIVPLKALAEE 83 (720)
T ss_dssp GCCSCHHHHHHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHHCS-EEEEECSSGGGHHH
T ss_pred hcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhCCC-EEEEEcCcHHHHHH
Confidence 344455566655543221334445555555 7889999999999999999754332211111232 23345566655555
Q ss_pred HHHHhhh--hhccccccceeeeeeecCCCCccccccccCHHHHHHHhccccC-CCCCcEEEEcCCCCCCc-chHHHHHHH
Q psy2071 123 VAQRVSE--EMDCQLGQEVGYSIRFEDCSSPKTVLKYMTDGMLLREGMSDPM-LENYQVILLDEAHERTL-ATDILMGVL 198 (302)
Q Consensus 123 ~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~~~~~lS~G~~qr~~la~al-~~~p~lliLDE~~~p~~-~lD~~~~~l 198 (302)
+..++.. ..+..+....|- ............+...|.|+..++...... +.+.+++|+||+|.-.. .-......+
T Consensus 84 ~~~~~~~l~~~g~~v~~~~G~-~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~l 162 (720)
T 2zj8_A 84 KFQEFQDWEKIGLRVAMATGD-YDSKDEWLGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIHLIGSRDRGATLEVI 162 (720)
T ss_dssp HHHHTGGGGGGTCCEEEECSC-SSCCCGGGGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHH
T ss_pred HHHHHHHHHhcCCEEEEecCC-CCccccccCCCCEEEECHHHHHHHHHcChhhhhcCCEEEEECCcccCCCcccHHHHHH
Confidence 5555532 112222222221 011111122456677899988776655444 77899999999984211 111222222
Q ss_pred HHHHHHcCCCcEEEEEEec-CHHHHHhhccCCCeeeecCcCCccce
Q psy2071 199 KEVIKQRADLKLVIMSATL-DAGKFQQYFDNAPLMNVPGRTHPVEI 243 (302)
Q Consensus 199 ~~ll~~~~~~~~~ii~~th-d~~~~~~~~d~~~~l~i~g~~~~~~~ 243 (302)
...+. ....++++++|. +.+.+.++.+. ..+...++..|.+.
T Consensus 163 l~~l~--~~~~ii~lSATl~n~~~~~~~l~~-~~~~~~~rp~~l~~ 205 (720)
T 2zj8_A 163 LAHML--GKAQIIGLSATIGNPEELAEWLNA-ELIVSDWRPVKLRR 205 (720)
T ss_dssp HHHHB--TTBEEEEEECCCSCHHHHHHHTTE-EEEECCCCSSEEEE
T ss_pred HHHhh--cCCeEEEEcCCcCCHHHHHHHhCC-cccCCCCCCCcceE
Confidence 22221 245788999997 57778777752 23344555555543
No 155
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.72 E-value=1.7e-09 Score=92.69 Aligned_cols=36 Identities=22% Similarity=0.152 Sum_probs=22.8
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhh-hcc
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWC-VEY 101 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~-g~~ 101 (302)
...++++.+++|++++|+|||||||||++++|+ |++
T Consensus 16 ~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 16 TQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp ------CCEECCCEEEEECSCC----CHHHHHHC---
T ss_pred ccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 478899999999999999999999999999999 988
No 156
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.69 E-value=2.5e-09 Score=96.91 Aligned_cols=47 Identities=23% Similarity=0.268 Sum_probs=39.2
Q ss_pred hHHHHHHHHHHHhC-------CEEEEEccCCCCccchhhhhhhcc----cccCCCEEE
Q psy2071 64 FEYRTEFMTLLAQN-------QCIVLVGETGSGKTTQIPQWCVEY----SKSVGAKAV 110 (302)
Q Consensus 64 ~~~~~~i~~~i~~g-------~i~~liG~nGsGKSTll~~i~g~~----~~~~G~~~i 110 (302)
..++++++..++.| +.++|+||||||||||++++++.+ .+.+|.+..
T Consensus 31 ~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~ 88 (334)
T 1in4_A 31 ENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLV 88 (334)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCC
T ss_pred HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhc
Confidence 35678889999877 899999999999999999999987 666665543
No 157
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=98.69 E-value=7.6e-09 Score=101.24 Aligned_cols=154 Identities=21% Similarity=0.234 Sum_probs=99.1
Q ss_pred HHHHhhcCCChhHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCC-CEEEeecCchhhhHHHHHHHhhhhh
Q psy2071 53 ELHRKRITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVG-AKAVACTQPRRVAAMSVAQRVSEEM 131 (302)
Q Consensus 53 ~l~~~r~~lp~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G-~~~i~~~~~~~~~~~~~~~~~~~~~ 131 (302)
+....|..+|.+...+.+...+..|+.+.+.||+|||||+.+.+.+.. .| .+. ...|.+..+..+..++...+
T Consensus 208 e~l~~r~~lP~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~----~g~~vL--Vl~PTReLA~Qia~~l~~~~ 281 (666)
T 3o8b_A 208 ESMETTMRSPVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAA----QGYKVL--VLNPSVAATLGFGAYMSKAH 281 (666)
T ss_dssp HHHHHHHHSCSCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHH----TTCCEE--EEESCHHHHHHHHHHHHHHH
T ss_pred HhhhhhccCCcHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHH----CCCeEE--EEcchHHHHHHHHHHHHHHh
Confidence 445667778888888888888889999999999999999987654322 24 333 34566766666766766666
Q ss_pred ccccccceeeeeeecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHHHHHHHHHHHcCCCcEE
Q psy2071 132 DCQLGQEVGYSIRFEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILMGVLKEVIKQRADLKLV 211 (302)
Q Consensus 132 ~~~~~~~v~~~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~~~l~~ll~~~~~~~~~ 211 (302)
+..++..+++... .....+...+.|..++ -....+.+.++||+||+|+...+.+.....+.+.+......-..
T Consensus 282 g~~vg~~vG~~~~-----~~~~~IlV~TPGrLl~--~~~l~l~~l~~lVlDEAH~l~~~~~~~l~~Il~~l~~~~~~lli 354 (666)
T 3o8b_A 282 GIDPNIRTGVRTI-----TTGAPVTYSTYGKFLA--DGGCSGGAYDIIICDECHSTDSTTILGIGTVLDQAETAGARLVV 354 (666)
T ss_dssp SCCCEEECSSCEE-----CCCCSEEEEEHHHHHH--TTSCCTTSCSEEEETTTTCCSHHHHHHHHHHHHHTTTTTCSEEE
T ss_pred CCCeeEEECcEec-----cCCCCEEEECcHHHHh--CCCcccCcccEEEEccchhcCccHHHHHHHHHHhhhhcCCceEE
Confidence 5554444444321 2234566677787532 12233567999999999887766665554444444322222245
Q ss_pred EEEEecCH
Q psy2071 212 IMSATLDA 219 (302)
Q Consensus 212 ii~~thd~ 219 (302)
+++||...
T Consensus 355 l~SAT~~~ 362 (666)
T 3o8b_A 355 LATATPPG 362 (666)
T ss_dssp EEESSCTT
T ss_pred EECCCCCc
Confidence 56888754
No 158
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.65 E-value=7.8e-08 Score=89.74 Aligned_cols=123 Identities=17% Similarity=0.195 Sum_probs=76.8
Q ss_pred CCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhhccccccceeeeeeecCCCCcccccc
Q psy2071 77 NQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRFEDCSSPKTVLK 156 (302)
Q Consensus 77 g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 156 (302)
+.+++++|++||||||++..|+..+.+..+.+.+.+.++.+.++...........+ ..+. ......
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~g--------v~~~--~~~~~~---- 162 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIG--------VQVY--GEPNNQ---- 162 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTT--------CCEE--CCTTCS----
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcC--------Ccee--eccccC----
Confidence 57999999999999999999999998877889888888777666554444333222 1111 000000
Q ss_pred ccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcc--hHHHH-HHHHHHHHHcCCCcEEEEEEec
Q psy2071 157 YMTDGMLLREGMSDPMLENYQVILLDEAHERTLA--TDILM-GVLKEVIKQRADLKLVIMSATL 217 (302)
Q Consensus 157 ~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~--lD~~~-~~l~~ll~~~~~~~~~ii~~th 217 (302)
..-...+.+++.+...+++++|+|+++. .. .|... ..+..+........+++++-++
T Consensus 163 --dp~~i~~~al~~a~~~~~DvvIIDTaGr--~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~ 222 (433)
T 3kl4_A 163 --NPIEIAKKGVDIFVKNKMDIIIVDTAGR--HGYGEETKLLEEMKEMYDVLKPDDVILVIDAS 222 (433)
T ss_dssp --CHHHHHHHHHHHTTTTTCSEEEEEECCC--SSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGG
T ss_pred --CHHHHHHHHHHHHHhcCCCEEEEECCCC--ccccCCHHHHHHHHHHHHhhCCcceEEEEeCc
Confidence 1112223356666668999999999532 23 55433 5666665544444555555554
No 159
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.64 E-value=3.1e-10 Score=100.09 Aligned_cols=113 Identities=13% Similarity=0.009 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhh-------HHHHHHHhhh-hhccccc
Q psy2071 65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVA-------AMSVAQRVSE-EMDCQLG 136 (302)
Q Consensus 65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~-------~~~~~~~~~~-~~~~~~~ 136 (302)
...+++++.+++| ++|+||||||||||++++++... .|.+.+.+.+..... ...+.+.... .....+.
T Consensus 63 ~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~i 138 (278)
T 1iy2_A 63 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFI 138 (278)
T ss_dssp HHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSEEEEE
T ss_pred HHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCcEEeh
Confidence 3456666666777 89999999999999999999875 677888765432110 0011111110 1112233
Q ss_pred cceeeee-eecC---------CCCccccccccCHHHHHHHhccccCCCCCcEEEEcC
Q psy2071 137 QEVGYSI-RFED---------CSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDE 183 (302)
Q Consensus 137 ~~v~~~~-~~~~---------~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE 183 (302)
+++.... .... .......+..||+|++|++.+++++..+|++ ||+
T Consensus 139 Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~a~t~~p~~--ld~ 193 (278)
T 1iy2_A 139 DEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDI--LDP 193 (278)
T ss_dssp ETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCEEEEEEESCTTS--SCH
T ss_pred hhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCEEEEEecCCchh--CCH
Confidence 3331110 0000 0001234556999999999999999999987 676
No 160
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.62 E-value=7.9e-08 Score=93.83 Aligned_cols=51 Identities=18% Similarity=0.094 Sum_probs=43.5
Q ss_pred ChhHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccC-CCEEEee
Q psy2071 62 PVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSV-GAKAVAC 112 (302)
Q Consensus 62 p~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~-G~~~i~~ 112 (302)
....+++.++..+..|+.++|+|||||||||++++|++++.+.. |.+.+.+
T Consensus 45 G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~ 96 (604)
T 3k1j_A 45 GQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFP 96 (604)
T ss_dssp SCHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEEC
T ss_pred CchhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeC
Confidence 34457899999999999999999999999999999999998877 4555544
No 161
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.61 E-value=3.9e-08 Score=89.56 Aligned_cols=48 Identities=21% Similarity=0.151 Sum_probs=35.5
Q ss_pred HHHHHH--HHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecC
Q psy2071 67 RTEFMT--LLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQ 114 (302)
Q Consensus 67 ~~~i~~--~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~ 114 (302)
++.+.- -+++|+++.|.|++|||||||..+++.......|.+.+....
T Consensus 49 LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E 98 (349)
T 2zr9_A 49 LDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAE 98 (349)
T ss_dssp HHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred HHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 444443 466999999999999999999988887665555666555443
No 162
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.60 E-value=3.9e-10 Score=97.96 Aligned_cols=113 Identities=14% Similarity=0.025 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhH---HHHHHHhhhh-----hccccc
Q psy2071 65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAA---MSVAQRVSEE-----MDCQLG 136 (302)
Q Consensus 65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~---~~~~~~~~~~-----~~~~~~ 136 (302)
...+++++.+++| ++|+||||||||||++++++... .|.+.+.+.+...... ......+.+. ....+.
T Consensus 39 ~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~ 114 (254)
T 1ixz_A 39 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFI 114 (254)
T ss_dssp HHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTSSSEEEEE
T ss_pred HHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEe
Confidence 3456666667777 89999999999999999999874 6777777654311100 0001111111 112222
Q ss_pred cceeee-eeecC----CC-----CccccccccCHHHHHHHhccccCCCCCcEEEEcC
Q psy2071 137 QEVGYS-IRFED----CS-----SPKTVLKYMTDGMLLREGMSDPMLENYQVILLDE 183 (302)
Q Consensus 137 ~~v~~~-~~~~~----~~-----~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE 183 (302)
+++... ..... .. ..+..+..||+|++|++.+++++..+|++ +|+
T Consensus 115 Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p~~--ld~ 169 (254)
T 1ixz_A 115 DEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDI--LDP 169 (254)
T ss_dssp ETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGGG--SCG
T ss_pred hhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCCchh--CCH
Confidence 333111 00000 00 01234556899999999999999999987 687
No 163
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.57 E-value=3.7e-08 Score=92.86 Aligned_cols=51 Identities=12% Similarity=0.145 Sum_probs=42.1
Q ss_pred hHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCC-CEEEeecC
Q psy2071 64 FEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVG-AKAVACTQ 114 (302)
Q Consensus 64 ~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G-~~~i~~~~ 114 (302)
+..++++..-+.+|++++|.|++|+|||||+.++++...+..| .+.+....
T Consensus 190 ~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E 241 (454)
T 2r6a_A 190 FTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLE 241 (454)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESS
T ss_pred cHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECC
Confidence 4567888877999999999999999999999999988776556 66666544
No 164
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.56 E-value=2e-08 Score=89.69 Aligned_cols=44 Identities=11% Similarity=0.134 Sum_probs=31.4
Q ss_pred HHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEE---eecC
Q psy2071 71 MTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAV---ACTQ 114 (302)
Q Consensus 71 ~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i---~~~~ 114 (302)
.+.+..|++++|+||||||||||+++|+|+..|++|.+.+ .|..
T Consensus 163 lf~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~ 209 (301)
T 1u0l_A 163 LKEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRH 209 (301)
T ss_dssp HHHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------
T ss_pred HHHHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCC
Confidence 3456689999999999999999999999999999999988 5544
No 165
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.55 E-value=1.4e-08 Score=84.89 Aligned_cols=31 Identities=13% Similarity=0.326 Sum_probs=26.4
Q ss_pred HHHHhCCEEEEEccCCCCccchhhhhhhccc
Q psy2071 72 TLLAQNQCIVLVGETGSGKTTQIPQWCVEYS 102 (302)
Q Consensus 72 ~~i~~g~i~~liG~nGsGKSTll~~i~g~~~ 102 (302)
+.+.+|++++|+||||||||||+++|+|+++
T Consensus 2 ~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 2 NAMNKANLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp ---CCCCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred CcCCCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 4567899999999999999999999999863
No 166
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=98.53 E-value=3.5e-08 Score=96.48 Aligned_cols=160 Identities=18% Similarity=0.260 Sum_probs=94.7
Q ss_pred CChhhHHHHHh--hcCCChhHHHHHHHHHHHhCCEEEEEccCCCCccch--hhhhhhcccccCCCEEEeecCchhhhHHH
Q psy2071 47 YTPRYHELHRK--RITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQ--IPQWCVEYSKSVGAKAVACTQPRRVAAMS 122 (302)
Q Consensus 47 ~~~~~~~l~~~--r~~lp~~~~~~~i~~~i~~g~i~~liG~nGsGKSTl--l~~i~g~~~~~~G~~~i~~~~~~~~~~~~ 122 (302)
++++|++.... +..+|+++. . ...+.+|+.+.+.+|+|||||+. ++++..+.. ..+.+.+. .|.+.-+..
T Consensus 157 ~~~~~~~~l~~~~~~~lpiq~~--~-i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~-~~~~vLvl--~PtreLa~Q 230 (618)
T 2whx_A 157 KSGDYVSAITQAERIGEPDYEV--D-EDIFRKKRLTIMDLHPGAGKTKRILPSIVREALK-RRLRTLIL--APTRVVAAE 230 (618)
T ss_dssp -----CEECBCCCCCCCCCCCC--C-GGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHH-TTCCEEEE--ESSHHHHHH
T ss_pred chHHHHHHHhhccccCCCcccc--C-HHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHh-CCCeEEEE--cChHHHHHH
Confidence 44445443222 667888875 2 55677899999999999999996 455544333 22234332 244433322
Q ss_pred HHHHhhhhhccccccceeeeeee-cCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHHHHHHHH
Q psy2071 123 VAQRVSEEMDCQLGQEVGYSIRF-EDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILMGVLKEV 201 (302)
Q Consensus 123 ~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~~~l~~l 201 (302)
+...+. +..++|.... .......+.+..++.|...+..+....+.+.++||+||+|.-..+.+.....+.+.
T Consensus 231 i~~~l~-------~~~v~~~~~~l~~~~tp~~~i~~~t~~~l~~~l~~~~~l~~~~~iViDEah~~~~~~~~~~~~i~~~ 303 (618)
T 2whx_A 231 MEEALR-------GLPIRYQTPAVKSDHTGREIVDLMCHATFTTRLLSSTRVPNYNLIVMDEAHFTDPCSVAARGYISTR 303 (618)
T ss_dssp HHHHTT-------TSCEEECCTTSSCCCCSSSCEEEEEHHHHHHHHHHCSSCCCCSEEEEESTTCCSHHHHHHHHHHHHH
T ss_pred HHHHhc-------CCceeEecccceeccCCCceEEEEChHHHHHHHhccccccCCeEEEEECCCCCCccHHHHHHHHHHH
Confidence 222221 1233333221 11223455667788888877777777899999999999998755555555555554
Q ss_pred HHHcCCCcEEEEEEecCHH
Q psy2071 202 IKQRADLKLVIMSATLDAG 220 (302)
Q Consensus 202 l~~~~~~~~~ii~~thd~~ 220 (302)
+.. .+..+++++||....
T Consensus 304 l~~-~~~q~il~SAT~~~~ 321 (618)
T 2whx_A 304 VEM-GEAAAIFMTATPPGS 321 (618)
T ss_dssp HHH-TSCEEEEECSSCTTC
T ss_pred hcc-cCccEEEEECCCchh
Confidence 422 345688888887543
No 167
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=98.53 E-value=4.3e-08 Score=93.24 Aligned_cols=157 Identities=10% Similarity=0.089 Sum_probs=87.5
Q ss_pred HHHHHHhCCEEEEEccCCCCccchhhhhhh--cccccCCCEEEeecCchhhhHHHHHHHhhhhhccccccceeeee----
Q psy2071 70 FMTLLAQNQCIVLVGETGSGKTTQIPQWCV--EYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSI---- 143 (302)
Q Consensus 70 i~~~i~~g~i~~liG~nGsGKSTll~~i~g--~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~---- 143 (302)
+...+.++..++|.|+|||||||+++.|+. ++.++.|.+.+.+.++........ ..+.... ..+..+.....
T Consensus 160 v~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~~el~~~-~~lPhl~-~~Vvtd~~~a~~~L~ 237 (512)
T 2ius_A 160 VVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVY-EGIPHLL-TEVVTDMKDAANALR 237 (512)
T ss_dssp EEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSSGGGGG-TTCTTBS-SSCBCSHHHHHHHHH
T ss_pred EEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCchhhhhhh-ccCCccc-ceeecCHHHHHHHHH
Confidence 345567789999999999999999999876 556666888887777654211000 0000000 00000000000
Q ss_pred --------e-----ecCCCC---cc-ccccccCHHHHHHH----------hccccCCCCCc-EEEEcCCCCCCcchHHH-
Q psy2071 144 --------R-----FEDCSS---PK-TVLKYMTDGMLLRE----------GMSDPMLENYQ-VILLDEAHERTLATDIL- 194 (302)
Q Consensus 144 --------~-----~~~~~~---~~-~~~~~lS~G~~qr~----------~la~al~~~p~-lliLDE~~~p~~~lD~~- 194 (302)
| ...... .+ .....+|+|++|+. .+++++...|. ++++|| +...++..
T Consensus 238 ~~~~EmerR~~ll~~~Gv~~i~~yn~~~~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlvIDE---~~~ll~~~~ 314 (512)
T 2ius_A 238 WCVNEMERRYKLMSALGVRNLAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDE---FADLMMTVG 314 (512)
T ss_dssp HHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTTCCCBCTTC---------CCBCCCCCEEEEEEET---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCccHHHHHHHHHHHhhcCCcccccccccccchhccccccccCCcEEEEEeC---HHHHHhhhh
Confidence 0 000000 00 01123566665542 35667778898 899999 55555522
Q ss_pred ---HHHHHHHHHHcCCCcEEEEEEecCHH-------HHHhhccCCCe
Q psy2071 195 ---MGVLKEVIKQRADLKLVIMSATLDAG-------KFQQYFDNAPL 231 (302)
Q Consensus 195 ---~~~l~~ll~~~~~~~~~ii~~thd~~-------~~~~~~d~~~~ 231 (302)
...+..+.+..+..|+.++++||... ...++..|+++
T Consensus 315 ~~~~~~l~~Lar~gRa~GI~LIlaTQrp~~dvl~~~i~~n~~~RI~l 361 (512)
T 2ius_A 315 KKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAF 361 (512)
T ss_dssp HHHHHHHHHHHHHCGGGTEEEEEEESCCCTTTSCHHHHHHCCEEEEE
T ss_pred HHHHHHHHHHHHHhhhCCcEEEEEecCCccccccHHHHhhcCCeEEE
Confidence 24455555555667999999999876 34455555543
No 168
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=98.53 E-value=3.9e-08 Score=91.57 Aligned_cols=48 Identities=21% Similarity=0.171 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecC
Q psy2071 65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQ 114 (302)
Q Consensus 65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~ 114 (302)
.+++++ . ..+|++++|+|||||||||++++++|++.|+.|.|.+.+..
T Consensus 157 ~~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ 204 (418)
T 1p9r_A 157 DNFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDP 204 (418)
T ss_dssp HHHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESS
T ss_pred HHHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEeccc
Confidence 356666 2 47899999999999999999999999999999999887754
No 169
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.48 E-value=2.4e-08 Score=82.51 Aligned_cols=30 Identities=37% Similarity=0.666 Sum_probs=26.4
Q ss_pred CCEEEEEccCCCCccchhhhhhhcccccCC
Q psy2071 77 NQCIVLVGETGSGKTTQIPQWCVEYSKSVG 106 (302)
Q Consensus 77 g~i~~liG~nGsGKSTll~~i~g~~~~~~G 106 (302)
|++++|+|||||||||++++|+|++++..|
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~~~~ 30 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPDSFG 30 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGGGEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCccce
Confidence 678999999999999999999999874443
No 170
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.47 E-value=4e-09 Score=90.29 Aligned_cols=38 Identities=18% Similarity=0.258 Sum_probs=29.8
Q ss_pred CEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCc
Q psy2071 78 QCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQP 115 (302)
Q Consensus 78 ~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~ 115 (302)
++++|+||||||||||+++|+|++.|++|.+.+.|.+.
T Consensus 28 ~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~ 65 (227)
T 1qhl_A 28 LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTE 65 (227)
T ss_dssp HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC-------
T ss_pred cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEc
Confidence 67899999999999999999999999999999988664
No 171
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.46 E-value=9.9e-08 Score=85.83 Aligned_cols=52 Identities=23% Similarity=0.233 Sum_probs=44.7
Q ss_pred HHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhH
Q psy2071 69 EFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAA 120 (302)
Q Consensus 69 ~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~ 120 (302)
++++.+.++++++|+|+|||||||++..|++.+.+..|.+.+.+.++.+.+.
T Consensus 97 ~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a 148 (320)
T 1zu4_A 97 RIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGA 148 (320)
T ss_dssp CCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHH
T ss_pred CccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhH
Confidence 3455567899999999999999999999999999888899999888766554
No 172
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=98.42 E-value=6.6e-07 Score=84.20 Aligned_cols=150 Identities=17% Similarity=0.225 Sum_probs=82.4
Q ss_pred HHHhCCEEEEEccCCCCccc--hhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhhccccccceeeeeeecC-CC
Q psy2071 73 LLAQNQCIVLVGETGSGKTT--QIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRFED-CS 149 (302)
Q Consensus 73 ~i~~g~i~~liG~nGsGKST--ll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~ 149 (302)
.+..++++.+.+|+|||||+ +++++.-... ..+.+.+. .|.+.-+..+... +. +..+++...... ..
T Consensus 15 ~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~-~~~~~lvl--~Ptr~La~Q~~~~----l~---g~~v~~~~~~~~~~~ 84 (451)
T 2jlq_A 15 IFRKKRLTIMDLHPGAGKTKRILPSIVREALL-RRLRTLIL--APTRVVAAEMEEA----LR---GLPIRYQTPAVKSDH 84 (451)
T ss_dssp GGSTTCEEEECCCTTSSCCTTHHHHHHHHHHH-TTCCEEEE--ESSHHHHHHHHHH----TT---TSCEEECCTTCSCCC
T ss_pred HHhcCCeEEEECCCCCCHhhHHHHHHHHHHHh-cCCcEEEE--CCCHHHHHHHHHH----hc---CceeeeeeccccccC
Confidence 45667888999999999999 4554433322 22334332 2444322222222 21 112222221110 11
Q ss_pred CccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCC
Q psy2071 150 SPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILMGVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNA 229 (302)
Q Consensus 150 ~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~ 229 (302)
...+.+..++.|...+..+....+.+.++||+||+|......+.....+.... ...+..++++++|.+.+....+....
T Consensus 85 ~~~~~i~~~t~~~l~~~l~~~~~l~~~~~iViDEah~~~~~~~~~~~~~~~~~-~~~~~~~i~~SAT~~~~~~~~~~~~~ 163 (451)
T 2jlq_A 85 TGREIVDLMCHATFTTRLLSSTRVPNYNLIVMDEAHFTDPCSVAARGYISTRV-EMGEAAAIFMTATPPGSTDPFPQSNS 163 (451)
T ss_dssp CSSCCEEEEEHHHHHHHHHHCSCCCCCSEEEEETTTCCSHHHHHHHHHHHHHH-HTTSCEEEEECSSCTTCCCSSCCCSS
T ss_pred CCCceEEEEChHHHHHHhhCcccccCCCEEEEeCCccCCcchHHHHHHHHHhh-cCCCceEEEEccCCCccchhhhcCCC
Confidence 23345667888887766666677889999999999977433333333332211 22355788899998654433333344
Q ss_pred Ceee
Q psy2071 230 PLMN 233 (302)
Q Consensus 230 ~~l~ 233 (302)
.++.
T Consensus 164 ~~~~ 167 (451)
T 2jlq_A 164 PIED 167 (451)
T ss_dssp CEEE
T ss_pred ceEe
Confidence 4444
No 173
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=98.41 E-value=1e-06 Score=83.07 Aligned_cols=137 Identities=25% Similarity=0.265 Sum_probs=79.1
Q ss_pred HHHHhCCEEEEEccCCCCccch--hhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhhccccccceeeeeeecC-C
Q psy2071 72 TLLAQNQCIVLVGETGSGKTTQ--IPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRFED-C 148 (302)
Q Consensus 72 ~~i~~g~i~~liG~nGsGKSTl--l~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~ 148 (302)
..+..|+.+.+.+|+|||||+. ++++..+.. ..+.+.+ ..|.+.-+..+...+. +..+++...... .
T Consensus 16 ~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~-~~~~~lv--l~Ptr~La~Q~~~~l~-------g~~v~~~~~~~~~~ 85 (459)
T 2z83_A 16 NMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQ-QRLRTAV--LAPTRVVAAEMAEALR-------GLPVRYQTSAVQRE 85 (459)
T ss_dssp GGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHH-TTCCEEE--EECSHHHHHHHHHHTT-------TSCEEECC------
T ss_pred HHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHh-CCCcEEE--ECchHHHHHHHHHHhc-------CceEeEEecccccC
Confidence 3567899999999999999996 444433332 2233333 2354443333333221 112222211100 1
Q ss_pred CCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEEEecCH
Q psy2071 149 SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILMGVLKEVIKQRADLKLVIMSATLDA 219 (302)
Q Consensus 149 ~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~~~l~~ll~~~~~~~~~ii~~thd~ 219 (302)
....+.+..++.|...+..+....+.+.++||+||+|+.....+.....+..... .....++++++|...
T Consensus 86 ~t~~~~i~~~~~~~l~~~l~~~~~l~~~~~iViDEaH~~~~~~~~~~~~~~~~~~-~~~~~~il~SAT~~~ 155 (459)
T 2z83_A 86 HQGNEIVDVMCHATLTHRLMSPNRVPNYNLFVMDEAHFTDPASIAARGYIATKVE-LGEAAAIFMTATPPG 155 (459)
T ss_dssp --CCCSEEEEEHHHHHHHHHSCC-CCCCSEEEESSTTCCSHHHHHHHHHHHHHHH-TTSCEEEEECSSCTT
T ss_pred CCCCcEEEEEchHHHHHHhhccccccCCcEEEEECCccCCchhhHHHHHHHHHhc-cCCccEEEEEcCCCc
Confidence 1233456678888877766777778899999999999875544544444444432 245578889998864
No 174
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.41 E-value=9.1e-08 Score=85.40 Aligned_cols=43 Identities=12% Similarity=0.149 Sum_probs=33.8
Q ss_pred HHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEE---eecC
Q psy2071 71 MTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAV---ACTQ 114 (302)
Q Consensus 71 ~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i---~~~~ 114 (302)
.+.+..|++++|+|+||||||||+++|+ +..|++|.+.+ .|..
T Consensus 159 L~~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~ 204 (302)
T 2yv5_A 159 LVDYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRH 204 (302)
T ss_dssp HHHHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------
T ss_pred HHhhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCC
Confidence 3455679999999999999999999999 99999999988 6654
No 175
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.37 E-value=7.7e-07 Score=81.01 Aligned_cols=40 Identities=25% Similarity=0.208 Sum_probs=33.9
Q ss_pred HHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEee
Q psy2071 73 LLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVAC 112 (302)
Q Consensus 73 ~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~ 112 (302)
-+.+|+++.|.||+|||||||+.+++....+..|.+.+..
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId 96 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFID 96 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence 4678999999999999999999999998877777764443
No 176
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.36 E-value=2.8e-08 Score=88.75 Aligned_cols=39 Identities=18% Similarity=0.239 Sum_probs=26.5
Q ss_pred HHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEE
Q psy2071 72 TLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAV 110 (302)
Q Consensus 72 ~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i 110 (302)
+.+.+|++++|+|+||||||||+++|+|+..+..|.+.+
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~ 206 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISE 206 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC-----------
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccccccceee
Confidence 567789999999999999999999999999999999877
No 177
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.36 E-value=8.3e-08 Score=90.75 Aligned_cols=104 Identities=15% Similarity=0.146 Sum_probs=61.4
Q ss_pred EEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhhccccccceeeeeeecCCCCccccccccC
Q psy2071 80 IVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRFEDCSSPKTVLKYMT 159 (302)
Q Consensus 80 ~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~lS 159 (302)
+.|+||+|+||||+.+.+++.... -.+.+.+.+. .. .. .=.
T Consensus 52 vLL~GppGtGKT~Laraia~~~~~--~f~~is~~~~---------------~~--------------------~~--~g~ 92 (476)
T 2ce7_A 52 ILLVGPPGTGKTLLARAVAGEANV--PFFHISGSDF---------------VE--------------------LF--VGV 92 (476)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHTC--CEEEEEGGGT---------------TT--------------------CC--TTH
T ss_pred EEEECCCCCCHHHHHHHHHHHcCC--CeeeCCHHHH---------------HH--------------------HH--hcc
Confidence 889999999999999999885421 0111111100 00 00 002
Q ss_pred HHHHHHHhccccCCCCCcEEEEcCCCCC-------CcchHHHH-HHHHHHHHHc----CCCcEEEEEEecCHHHH
Q psy2071 160 DGMLLREGMSDPMLENYQVILLDEAHER-------TLATDILM-GVLKEVIKQR----ADLKLVIMSATLDAGKF 222 (302)
Q Consensus 160 ~G~~qr~~la~al~~~p~lliLDE~~~p-------~~~lD~~~-~~l~~ll~~~----~~~~~~ii~~thd~~~~ 222 (302)
+++++|..++.|....|.+|++||++.= +.+.|... ..+.+++... ...+++||.+||..+.+
T Consensus 93 ~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~L 167 (476)
T 2ce7_A 93 GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDIL 167 (476)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGS
T ss_pred cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhh
Confidence 5677888888888889999999993211 12333222 3344444322 23478999999987644
No 178
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.35 E-value=1.3e-07 Score=79.08 Aligned_cols=48 Identities=19% Similarity=0.068 Sum_probs=40.3
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCE--EEeecC
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAK--AVACTQ 114 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~--~i~~~~ 114 (302)
..+......++|++++|+|+|||||||+.+.|++.+. ..|.+ .+++..
T Consensus 14 ~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~d~ 63 (200)
T 3uie_A 14 KVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDGDN 63 (200)
T ss_dssp HHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHH
T ss_pred HHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecCch
Confidence 3466677788999999999999999999999999887 67877 666543
No 179
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.34 E-value=8.9e-07 Score=80.87 Aligned_cols=35 Identities=20% Similarity=0.260 Sum_probs=27.5
Q ss_pred EEEEEccCCCCccchhhhhhhcccccCC--CEEEeec
Q psy2071 79 CIVLVGETGSGKTTQIPQWCVEYSKSVG--AKAVACT 113 (302)
Q Consensus 79 i~~liG~nGsGKSTll~~i~g~~~~~~G--~~~i~~~ 113 (302)
.+.|.||+|+||||+++.++....+..+ .+.+++.
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~ 82 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGF 82 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCc
Confidence 8999999999999999999988765432 3445543
No 180
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.33 E-value=1.2e-07 Score=77.91 Aligned_cols=35 Identities=14% Similarity=0.154 Sum_probs=28.9
Q ss_pred hCCEEEEEccCCCCccchhhhhhhcccc-cCCCEEE
Q psy2071 76 QNQCIVLVGETGSGKTTQIPQWCVEYSK-SVGAKAV 110 (302)
Q Consensus 76 ~g~i~~liG~nGsGKSTll~~i~g~~~~-~~G~~~i 110 (302)
+|++++|+||||||||||++.|++.+++ ..|.+..
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ 39 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPH 39 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeec
Confidence 6899999999999999999999998763 3455443
No 181
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=98.32 E-value=4.4e-07 Score=81.48 Aligned_cols=52 Identities=15% Similarity=0.020 Sum_probs=42.2
Q ss_pred hHHHHHHHHHHHhCC------EEEEEccCCCCccchhhhhhhccc--ccCCCEEEeecCc
Q psy2071 64 FEYRTEFMTLLAQNQ------CIVLVGETGSGKTTQIPQWCVEYS--KSVGAKAVACTQP 115 (302)
Q Consensus 64 ~~~~~~i~~~i~~g~------i~~liG~nGsGKSTll~~i~g~~~--~~~G~~~i~~~~~ 115 (302)
.+.+.++...+..++ +++|+|||||||||++++|.+++. |+.|.+.+.+.+.
T Consensus 73 ~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~ 132 (321)
T 3tqc_A 73 RQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDG 132 (321)
T ss_dssp HHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGG
T ss_pred hHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecc
Confidence 345677788888877 999999999999999999999987 4667777666553
No 182
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.30 E-value=1.2e-07 Score=79.18 Aligned_cols=34 Identities=29% Similarity=0.208 Sum_probs=28.9
Q ss_pred HHHhCCEEEEEccCCCCccchhhhhhhcccccCC
Q psy2071 73 LLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVG 106 (302)
Q Consensus 73 ~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G 106 (302)
.+.+|++++|+|+|||||||++++|++.+.|+.|
T Consensus 2 ~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~ 35 (207)
T 2j41_A 2 DNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK 35 (207)
T ss_dssp --CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE
Confidence 4678999999999999999999999998866544
No 183
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.29 E-value=2.4e-07 Score=77.38 Aligned_cols=39 Identities=26% Similarity=0.235 Sum_probs=32.2
Q ss_pred HHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCc
Q psy2071 73 LLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQP 115 (302)
Q Consensus 73 ~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~ 115 (302)
..++|++++|+|+|||||||++++|++.+ |.+.+.+...
T Consensus 25 ~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d~~ 63 (200)
T 4eun_A 25 TGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEADAF 63 (200)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGGGG
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEccccc
Confidence 34689999999999999999999999876 7888877654
No 184
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=98.29 E-value=3.9e-06 Score=78.47 Aligned_cols=132 Identities=21% Similarity=0.318 Sum_probs=74.4
Q ss_pred hCCEEEEEccCCCCccchh-hhhh-hcccccCC-CEEEeecCchhhhHHHHHHHhhhhhccccccceeeeeee-cCCCCc
Q psy2071 76 QNQCIVLVGETGSGKTTQI-PQWC-VEYSKSVG-AKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRF-EDCSSP 151 (302)
Q Consensus 76 ~g~i~~liG~nGsGKSTll-~~i~-g~~~~~~G-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~ 151 (302)
+|+.+.+.||+|||||+.. ..++ -.. ..| .+.+. .|.+.-+. ++...+. +..+++.... ......
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~--~~g~~~lvl--~Pt~~La~----Q~~~~~~---~~~v~~~~~~~~~~~~~ 69 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAV--KKRLRTVIL--APTRVVAS----EMYEALR---GEPIRYMTPAVQSERTG 69 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHH--HTTCCEEEE--ESSHHHHH----HHHHHTT---TSCEEEC---------C
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHH--hCCCCEEEE--CcHHHHHH----HHHHHhC---CCeEEEEecCccccCCC
Confidence 4788999999999999963 2222 222 233 34332 24333222 2222221 1233332221 112223
Q ss_pred cccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEEEecCH
Q psy2071 152 KTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILMGVLKEVIKQRADLKLVIMSATLDA 219 (302)
Q Consensus 152 ~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~~~l~~ll~~~~~~~~~ii~~thd~ 219 (302)
.+.+..++.|...+..+....+.+.+++|+||+|.-....+.....+.++.. ..+..+.++++|...
T Consensus 70 ~~~~~~~~~~~l~~~l~~~~~~~~l~~vViDEaH~~~~~~~~~~~~l~~~~~-~~~~~~l~~SAT~~~ 136 (431)
T 2v6i_A 70 NEIVDFMCHSTFTMKLLQGVRVPNYNLYIMDEAHFLDPASVAARGYIETRVS-MGDAGAIFMTATPPG 136 (431)
T ss_dssp CCSEEEEEHHHHHHHHHHTCCCCCCSEEEEESTTCCSHHHHHHHHHHHHHHH-TTSCEEEEEESSCTT
T ss_pred CceEEEEchHHHHHHHhcCccccCCCEEEEeCCccCCccHHHHHHHHHHHhh-CCCCcEEEEeCCCCc
Confidence 4566778888877766666678899999999999864444444455555542 234578888988764
No 185
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=98.25 E-value=1e-06 Score=79.58 Aligned_cols=130 Identities=12% Similarity=0.070 Sum_probs=82.6
Q ss_pred hHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhh-hhccccccceeee
Q psy2071 64 FEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSE-EMDCQLGQEVGYS 142 (302)
Q Consensus 64 ~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~ 142 (302)
+..++.+.--+.+|+++.|.|++|+|||||...++.......+.+.+...... ...+..++.. .....
T Consensus 33 ~~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlEms---~~ql~~Rlls~~~~v~-------- 101 (338)
T 4a1f_A 33 FVQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLEMS---AEQLALRALSDLTSIN-------- 101 (338)
T ss_dssp CHHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESSSC---HHHHHHHHHHHHHCCC--------
T ss_pred ChHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCC---HHHHHHHHHHHhhCCC--------
Confidence 34466666668999999999999999999998887765443345555443321 1112222211 10000
Q ss_pred eeecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEEEe
Q psy2071 143 IRFEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILMGVLKEVIKQRADLKLVIMSAT 216 (302)
Q Consensus 143 ~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~~~l~~ll~~~~~~~~~ii~~t 216 (302)
...-.-..||.++.+|+..|...+.++++.|.|+ |...++.+...++.+.+... +..+|++-
T Consensus 102 -------~~~l~~g~Ls~~e~~~l~~a~~~l~~~~l~I~d~---~~~si~~i~~~ir~l~~~~g--g~~lIVID 163 (338)
T 4a1f_A 102 -------MHDLESGRLDDDQWENLAKCFDHLSQKKLFFYDK---SYVRIEQIRLQLRKLKSQHK--ELGIAFID 163 (338)
T ss_dssp -------HHHHHHTCCCHHHHHHHHHHHHHHHHSCEEEECC---TTCCHHHHHHHHHHHHHHCT--TEEEEEEE
T ss_pred -------HHHHhcCCCCHHHHHHHHHHHHHHhcCCeEEeCC---CCCcHHHHHHHHHHHHHhcC--CCCEEEEe
Confidence 0000113689999999999888888899999999 88888877666666654432 34555443
No 186
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.24 E-value=1.6e-06 Score=78.38 Aligned_cols=41 Identities=22% Similarity=0.302 Sum_probs=35.9
Q ss_pred hHHHHHHHHHHHhCCE--EEEEccCCCCccchhhhhhhccccc
Q psy2071 64 FEYRTEFMTLLAQNQC--IVLVGETGSGKTTQIPQWCVEYSKS 104 (302)
Q Consensus 64 ~~~~~~i~~~i~~g~i--~~liG~nGsGKSTll~~i~g~~~~~ 104 (302)
..+.+.+...++.|++ +.+.||+|+||||+++++++.+.+.
T Consensus 31 ~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~ 73 (340)
T 1sxj_C 31 NEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGK 73 (340)
T ss_dssp HHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 3467888999999998 9999999999999999999887644
No 187
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=98.22 E-value=3.5e-07 Score=76.50 Aligned_cols=41 Identities=22% Similarity=0.084 Sum_probs=35.9
Q ss_pred HHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecC
Q psy2071 74 LAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQ 114 (302)
Q Consensus 74 i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~ 114 (302)
..+|.+++|+|+|||||||+++.|++.+.+..|.+.+.+.+
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d 59 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMD 59 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGG
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccC
Confidence 35688999999999999999999999998888888877655
No 188
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=98.22 E-value=9.6e-08 Score=79.96 Aligned_cols=122 Identities=16% Similarity=0.137 Sum_probs=61.2
Q ss_pred EEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHH---HHHHHhhhhhccccccceeeeeeecCCCCccccc
Q psy2071 79 CIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAM---SVAQRVSEEMDCQLGQEVGYSIRFEDCSSPKTVL 155 (302)
Q Consensus 79 i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~---~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 155 (302)
+++|+|++||||||+.+.++++ |...++.....+.... .....+...+ |. .
T Consensus 4 ~i~l~G~~GsGKST~~~~La~l-----g~~~id~d~~~~~~~~~~~~~~~~i~~~~--------g~-------------~ 57 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDL-----GVPLVDADVVAREVVAKDSPLLSKIVEHF--------GA-------------Q 57 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT-----TCCEEEHHHHHHHTTCSSCHHHHHHHHHH--------CT-------------T
T ss_pred EEEEECCCCCCHHHHHHHHHHC-----CCcccchHHHHHHHccCChHHHHHHHHHh--------CH-------------H
Confidence 6899999999999999999872 5555543221110000 0000000000 00 0
Q ss_pred cccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcCCCcEEEEEEecCHHHH--HhhccCCCee
Q psy2071 156 KYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM-GVLKEVIKQRADLKLVIMSATLDAGKF--QQYFDNAPLM 232 (302)
Q Consensus 156 ~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~--~~~~d~~~~l 232 (302)
...+.|+.+|..++.....+|+.+..++ ..+++.. ..+.+.+.... +.++++.+|.+.+. ...||.++++
T Consensus 58 ~~~~~g~~~r~~l~~~~f~~~~~~~~l~-----~~~~p~v~~~~~~~~~~~~--~~~vv~~~~~l~e~~~~~~~d~vi~l 130 (206)
T 1jjv_A 58 ILTEQGELNRAALRERVFNHDEDKLWLN-----NLLHPAIRERMKQKLAEQT--APYTLFVVPLLIENKLTALCDRILVV 130 (206)
T ss_dssp CC------CHHHHHHHHHTCHHHHHHHH-----HHHHHHHHHHHHHHHHTCC--SSEEEEECTTTTTTTCGGGCSEEEEE
T ss_pred HhccCccccHHHHHHHHhCCHHHHHHHH-----hccCHHHHHHHHHHHHhcC--CCEEEEEechhhhcCcHhhCCEEEEE
Confidence 1124577777777766666665432222 2344444 34444443322 33566667876554 6778888887
Q ss_pred e
Q psy2071 233 N 233 (302)
Q Consensus 233 ~ 233 (302)
+
T Consensus 131 ~ 131 (206)
T 1jjv_A 131 D 131 (206)
T ss_dssp E
T ss_pred E
Confidence 7
No 189
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.21 E-value=4.7e-07 Score=77.36 Aligned_cols=37 Identities=22% Similarity=0.231 Sum_probs=32.6
Q ss_pred HHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecC
Q psy2071 74 LAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQ 114 (302)
Q Consensus 74 i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~ 114 (302)
.++|++++|.|+||||||||+++|++. .|.+.+.+.+
T Consensus 17 ~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~ 53 (230)
T 2vp4_A 17 GTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEP 53 (230)
T ss_dssp TCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCT
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecC
Confidence 468999999999999999999999997 6788887654
No 190
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.15 E-value=1.7e-06 Score=78.61 Aligned_cols=30 Identities=27% Similarity=0.338 Sum_probs=25.9
Q ss_pred hCCEEEEEccCCCCccchhhhhhhcccccC
Q psy2071 76 QNQCIVLVGETGSGKTTQIPQWCVEYSKSV 105 (302)
Q Consensus 76 ~g~i~~liG~nGsGKSTll~~i~g~~~~~~ 105 (302)
.+..++|.||+|+|||||++.++....+..
T Consensus 44 ~~~~vli~G~~G~GKTtl~~~l~~~~~~~~ 73 (386)
T 2qby_A 44 KPNNIFIYGLTGTGKTAVVKFVLSKLHKKF 73 (386)
T ss_dssp CCCCEEEEECTTSSHHHHHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 467899999999999999999998776543
No 191
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.13 E-value=2.8e-07 Score=79.94 Aligned_cols=35 Identities=26% Similarity=0.168 Sum_probs=31.9
Q ss_pred HhCCEEEEEccCCCCccchhhhhh---hcccccCCCEE
Q psy2071 75 AQNQCIVLVGETGSGKTTQIPQWC---VEYSKSVGAKA 109 (302)
Q Consensus 75 ~~g~i~~liG~nGsGKSTll~~i~---g~~~~~~G~~~ 109 (302)
.+|++++|+|||||||||++++|+ |+..++.|.+.
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~ 62 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIY 62 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCcee
Confidence 689999999999999999999999 98888888765
No 192
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.11 E-value=6e-07 Score=73.44 Aligned_cols=37 Identities=16% Similarity=0.185 Sum_probs=30.1
Q ss_pred HHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCC
Q psy2071 70 FMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGA 107 (302)
Q Consensus 70 i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~ 107 (302)
+.+.+.+| +.+|+|||||||||++.+|.+++.+..|.
T Consensus 20 ~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~ 56 (182)
T 3kta_A 20 VVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAK 56 (182)
T ss_dssp EEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTG
T ss_pred EEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCccc
Confidence 34455567 99999999999999999999988766553
No 193
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.11 E-value=1.4e-05 Score=70.98 Aligned_cols=47 Identities=30% Similarity=0.285 Sum_probs=40.6
Q ss_pred CCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHH
Q psy2071 77 NQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSV 123 (302)
Q Consensus 77 g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~ 123 (302)
+.+++++|+||+||||++..+++.+.+..+.+.+.+.++++.+...+
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~q 144 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQ 144 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHH
Confidence 78999999999999999999999998888899998888776655443
No 194
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.10 E-value=7.8e-07 Score=77.11 Aligned_cols=38 Identities=24% Similarity=0.172 Sum_probs=35.0
Q ss_pred hHHHHHHHHHHHh---CCEEEEEccCCCCccchhhhhhhcc
Q psy2071 64 FEYRTEFMTLLAQ---NQCIVLVGETGSGKTTQIPQWCVEY 101 (302)
Q Consensus 64 ~~~~~~i~~~i~~---g~i~~liG~nGsGKSTll~~i~g~~ 101 (302)
..+++++++.|.+ |++++|+|++||||||+.+.|++.+
T Consensus 32 ~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 32 QQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred chhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 4578999999999 9999999999999999999998855
No 195
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.10 E-value=6.3e-06 Score=75.08 Aligned_cols=121 Identities=12% Similarity=0.109 Sum_probs=62.7
Q ss_pred CCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhhccccccceeeeeeecCCC-Cccccc
Q psy2071 77 NQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRFEDCS-SPKTVL 155 (302)
Q Consensus 77 g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~ 155 (302)
.-.++|+|++|+|||||++.+++.... +......... ..+. ... .. +..+.+-+.. ......
T Consensus 167 ~~~v~lvG~~gvGKSTLin~L~~~~~~------~~~~~~~t~~-----~~~~---~~~-~~--~~~~~l~Dt~G~~~~~~ 229 (357)
T 2e87_A 167 IPTVVIAGHPNVGKSTLLKALTTAKPE------IASYPFTTRG-----INVG---QFE-DG--YFRYQIIDTPGLLDRPI 229 (357)
T ss_dssp SCEEEEECSTTSSHHHHHHHHCSSCCE------EECCTTCSSC-----EEEE---EEE-ET--TEEEEEEECTTTSSSCS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCc------cCCCCCeeec-----eeEE---EEE-ec--CceEEEEeCCCccccch
Confidence 347999999999999999999875421 1110000000 0000 000 00 0111111111 112344
Q ss_pred cccCHHHHHHHhccccCCCCCcEEEEc-CCCCCCcchHHH--HHHHHHHHHHcCCCcEEEEEEe--cCHH
Q psy2071 156 KYMTDGMLLREGMSDPMLENYQVILLD-EAHERTLATDIL--MGVLKEVIKQRADLKLVIMSAT--LDAG 220 (302)
Q Consensus 156 ~~lS~G~~qr~~la~al~~~p~lliLD-E~~~p~~~lD~~--~~~l~~ll~~~~~~~~~ii~~t--hd~~ 220 (302)
..+++++++.+. +.+...++-++++| + +..++|.. ...+..+..... +..++++. ||+.
T Consensus 230 ~~~~~~~~~~~~-~~~~~ad~illV~D~s---~~~~~~~~~~~~~~~~i~~~~~--~~piilV~NK~Dl~ 293 (357)
T 2e87_A 230 SERNEIEKQAIL-ALRYLGNLIIYIFDPS---EHCGFPLEEQIHLFEEVHGEFK--DLPFLVVINKIDVA 293 (357)
T ss_dssp TTSCHHHHHHHH-GGGGTCSEEEEEECTT---CTTSSCHHHHHHHHHHHHHHTT--TSCEEEEECCTTTC
T ss_pred hhhhHHHHHHHH-HHHhcCCEEEEEEeCC---ccccCCHHHHHHHHHHHHHhcC--CCCEEEEEECcccC
Confidence 567899988776 55556778889999 7 76655433 244444443322 33444444 7764
No 196
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=98.09 E-value=2.2e-05 Score=71.30 Aligned_cols=175 Identities=18% Similarity=0.140 Sum_probs=82.0
Q ss_pred CCCCCCCChhhHHHHHhhcCCChhHHHHHHHHHHHhC--CEEEEEccCCCCccchh--hhhhhccccc-CCCEEEeecCc
Q psy2071 41 PFTGYPYTPRYHELHRKRITLPVFEYRTEFMTLLAQN--QCIVLVGETGSGKTTQI--PQWCVEYSKS-VGAKAVACTQP 115 (302)
Q Consensus 41 ~~~~~~~~~~~~~l~~~r~~lp~~~~~~~i~~~i~~g--~i~~liG~nGsGKSTll--~~i~g~~~~~-~G~~~i~~~~~ 115 (302)
+|......+...+......-..-+.+.......+-.| ..+.+.+|+|||||+.. .++..+.... .+.+.+. .|
T Consensus 6 ~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil--~P 83 (395)
T 3pey_A 6 SFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICL--AP 83 (395)
T ss_dssp SSTTSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTCCSCCEEEE--CS
T ss_pred CHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccCCCCccEEEE--CC
Confidence 4555555555555443321112223344455556566 88999999999999853 3332222211 2344333 23
Q ss_pred hhhhHHHHHHHhhhhhccccccceeeee--eecCCCCccccccccCHHHHHHHhccc-cCCCCCcEEEEcCCCCCCcchH
Q psy2071 116 RRVAAMSVAQRVSEEMDCQLGQEVGYSI--RFEDCSSPKTVLKYMTDGMLLREGMSD-PMLENYQVILLDEAHERTLATD 192 (302)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~~~~~~lS~G~~qr~~la~-al~~~p~lliLDE~~~p~~~lD 192 (302)
.+.-+......+... .......+.... ...........+-..|.+......... ..+.+.++||+||+|.-....+
T Consensus 84 ~~~L~~q~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~~~~ 162 (395)
T 3pey_A 84 SRELARQTLEVVQEM-GKFTKITSQLIVPDSFEKNKQINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQG 162 (395)
T ss_dssp SHHHHHHHHHHHHHH-TTTSCCCEEEESTTSSCTTSCBCCSEEEECHHHHHHHHHTTCBCCTTCCEEEEETHHHHHHSTT
T ss_pred CHHHHHHHHHHHHHH-hcccCeeEEEEecCchhhhccCCCCEEEEcHHHHHHHHHcCCcccccCCEEEEEChhhhcCccc
Confidence 332222222222211 101111111111 111111122345556777766544332 2367899999999875322111
Q ss_pred HHHHHHHHHHHHc-CCCcEEEEEEecCH
Q psy2071 193 ILMGVLKEVIKQR-ADLKLVIMSATLDA 219 (302)
Q Consensus 193 ~~~~~l~~ll~~~-~~~~~~ii~~thd~ 219 (302)
....+..+.... ....++++++|...
T Consensus 163 -~~~~~~~~~~~~~~~~~~i~~SAT~~~ 189 (395)
T 3pey_A 163 -LGDQCIRVKRFLPKDTQLVLFSATFAD 189 (395)
T ss_dssp -HHHHHHHHHHTSCTTCEEEEEESCCCH
T ss_pred -cHHHHHHHHHhCCCCcEEEEEEecCCH
Confidence 112333344333 23467888888764
No 197
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=98.09 E-value=7.4e-06 Score=85.03 Aligned_cols=175 Identities=16% Similarity=0.207 Sum_probs=98.5
Q ss_pred CChhHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhhcccccccee
Q psy2071 61 LPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVG 140 (302)
Q Consensus 61 lp~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 140 (302)
++.+.+.......+..|+.+.+.||+|||||+..-..+-..- ..|...+ ...|.+.-+......+...+. .++
T Consensus 183 f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l-~~g~rvl-vl~PtraLa~Q~~~~l~~~~~-----~Vg 255 (1108)
T 3l9o_A 183 FTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSL-KNKQRVI-YTSPIKALSNQKYRELLAEFG-----DVG 255 (1108)
T ss_dssp SCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHH-HTTCEEE-EEESSHHHHHHHHHHHHHHTS-----SEE
T ss_pred CCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHH-hcCCeEE-EEcCcHHHHHHHHHHHHHHhC-----Ccc
Confidence 344556677777889999999999999999987433322211 2333222 234554444444444443332 344
Q ss_pred eeeeecCCCCccccccccCHHHHHHHhccccC-CCCCcEEEEcCCCCCCcchHHHH-HHHHHHHHHcC-CCcEEEEEEec
Q psy2071 141 YSIRFEDCSSPKTVLKYMTDGMLLREGMSDPM-LENYQVILLDEAHERTLATDILM-GVLKEVIKQRA-DLKLVIMSATL 217 (302)
Q Consensus 141 ~~~~~~~~~~~~~~~~~lS~G~~qr~~la~al-~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll~~~~-~~~~~ii~~th 217 (302)
+.. .......+..+-.+|.|........... +.+.++||+||+|.- .|... ..+..++.... ...+++++||-
T Consensus 256 llt-Gd~~~~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH~l---~d~~rg~~~e~ii~~l~~~~qvl~lSATi 331 (1108)
T 3l9o_A 256 LMT-GDITINPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYM---RDKERGVVWEETIILLPDKVRYVFLSATI 331 (1108)
T ss_dssp EEC-SSCBCCCSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGGGT---TSHHHHHHHHHHHHHSCTTSEEEEEECSC
T ss_pred EEe-CccccCCCCCEEEeChHHHHHHHHcCccccccCCEEEEhhhhhc---cccchHHHHHHHHHhcCCCceEEEEcCCC
Confidence 422 1112233455677888877665544433 678899999998842 22222 23334444333 45788899995
Q ss_pred -CHHHHHhhcc-----CCCeeeecCcCCccceeec
Q psy2071 218 -DAGKFQQYFD-----NAPLMNVPGRTHPVEIFYT 246 (302)
Q Consensus 218 -d~~~~~~~~d-----~~~~l~i~g~~~~~~~~~~ 246 (302)
+...+..+.. .+.++....+..|.+.+..
T Consensus 332 pn~~e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~ 366 (1108)
T 3l9o_A 332 PNAMEFAEWICKIHSQPCHIVYTNFRPTPLQHYLF 366 (1108)
T ss_dssp SSCHHHHHHHHHHTCSCEEEEEECCCSSCEEEEEE
T ss_pred CCHHHHHHHHHhhcCCCeEEEecCCCcccceEEEe
Confidence 3334444432 2445555666667665543
No 198
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.09 E-value=6.6e-07 Score=75.23 Aligned_cols=29 Identities=28% Similarity=0.275 Sum_probs=26.9
Q ss_pred HhCCEEEEEccCCCCccchhhhhhhcccc
Q psy2071 75 AQNQCIVLVGETGSGKTTQIPQWCVEYSK 103 (302)
Q Consensus 75 ~~g~i~~liG~nGsGKSTll~~i~g~~~~ 103 (302)
++|++++|+|||||||||+++.|++.+++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 57999999999999999999999998765
No 199
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=98.07 E-value=6.6e-05 Score=63.08 Aligned_cols=189 Identities=14% Similarity=0.121 Sum_probs=86.8
Q ss_pred CCCCCCChhhHHHHHhhcCCChhHHHHHHHHHHHhCCEEEEEccCCCCccch--hhhhhhcccccCC-CEEEeecCchhh
Q psy2071 42 FTGYPYTPRYHELHRKRITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQ--IPQWCVEYSKSVG-AKAVACTQPRRV 118 (302)
Q Consensus 42 ~~~~~~~~~~~~l~~~r~~lp~~~~~~~i~~~i~~g~i~~liG~nGsGKSTl--l~~i~g~~~~~~G-~~~i~~~~~~~~ 118 (302)
|...+..+...+......--.-+.+.......+..|.-+.+.+|+|||||.. ++++..+.....| .+.+.. |.+.
T Consensus 16 f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~~lil~--Pt~~ 93 (224)
T 1qde_A 16 FDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLA--PTRE 93 (224)
T ss_dssp GGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEEC--SSHH
T ss_pred hhhcCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhccCCCceEEEEE--CCHH
Confidence 4444455555544433321122334555566677888899999999999975 3444333222223 333332 3322
Q ss_pred hHHHHHHHhhh---hhccccccceeeeeeec-CCCCccccccccCHHHHHHHhc-cccCCCCCcEEEEcCCCCCCcchHH
Q psy2071 119 AAMSVAQRVSE---EMDCQLGQEVGYSIRFE-DCSSPKTVLKYMTDGMLLREGM-SDPMLENYQVILLDEAHERTLATDI 193 (302)
Q Consensus 119 ~~~~~~~~~~~---~~~~~~~~~v~~~~~~~-~~~~~~~~~~~lS~G~~qr~~l-a~al~~~p~lliLDE~~~p~~~lD~ 193 (302)
-+......+.. ..+..+....+...... .....+..+-..|.|....... ....+.+.+++|+||+|.- .+.
T Consensus 94 L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~iViDEah~~---~~~ 170 (224)
T 1qde_A 94 LALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEM---LSS 170 (224)
T ss_dssp HHHHHHHHHHHHTTTSCCCEEEECC----------CTTCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHH---HHT
T ss_pred HHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcCCCCCEEEECHHHHHHHHHhCCcchhhCcEEEEcChhHH---hhh
Confidence 22222222211 11111111111000000 0001113344566666544332 2334677899999998741 111
Q ss_pred -HHHHHHHHHHHcC-CCcEEEEEEecCHH---HHHhhccCCCeeeec
Q psy2071 194 -LMGVLKEVIKQRA-DLKLVIMSATLDAG---KFQQYFDNAPLMNVP 235 (302)
Q Consensus 194 -~~~~l~~ll~~~~-~~~~~ii~~thd~~---~~~~~~d~~~~l~i~ 235 (302)
....+..++.... ...++++++|...+ .+..++..-..+.+.
T Consensus 171 ~~~~~l~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~p~~i~~~ 217 (224)
T 1qde_A 171 GFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVK 217 (224)
T ss_dssp TCHHHHHHHHHHSCTTCEEEEEESSCCHHHHHHHHHHCSSCEEEC--
T ss_pred hhHHHHHHHHHhCCccCeEEEEEeecCHHHHHHHHHHCCCCEEEEec
Confidence 1133445554443 34578888898653 344555544444433
No 200
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=98.07 E-value=2e-05 Score=73.82 Aligned_cols=135 Identities=21% Similarity=0.210 Sum_probs=75.8
Q ss_pred HHhCCEEEEEccCCCCccchh--hhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhhccccccceeeeeee-cCCCC
Q psy2071 74 LAQNQCIVLVGETGSGKTTQI--PQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRF-EDCSS 150 (302)
Q Consensus 74 i~~g~i~~liG~nGsGKSTll--~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~ 150 (302)
+.+|+.+.+.||+|||||+.. +++..+.. ..+.+.+.. |.+.-+......+. .. .+.+.... .....
T Consensus 5 l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~-~~~~~lil~--Ptr~La~Q~~~~l~---~~----~v~~~~~~~~~v~T 74 (440)
T 1yks_A 5 LKKGMTTVLDFHPGAGKTRRFLPQILAECAR-RRLRTLVLA--PTRVVLSEMKEAFH---GL----DVKFHTQAFSAHGS 74 (440)
T ss_dssp TSTTCEEEECCCTTSSTTTTHHHHHHHHHHH-TTCCEEEEE--SSHHHHHHHHHHTT---TS----CEEEESSCCCCCCC
T ss_pred hhCCCCEEEEcCCCCCHHHHHHHHHHHHHHh-cCCeEEEEc--chHHHHHHHHHHHh---cC----CeEEecccceeccC
Confidence 567899999999999999973 33322222 222344332 44433332222221 11 12222111 11223
Q ss_pred ccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEEEecCH
Q psy2071 151 PKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILMGVLKEVIKQRADLKLVIMSATLDA 219 (302)
Q Consensus 151 ~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~~~l~~ll~~~~~~~~~ii~~thd~ 219 (302)
..+.+..+..|...+..+....+.+.+++|+||+|.-..+.+.....+..+.. ..+..+.++++|...
T Consensus 75 p~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~~~~~~~~~~~~~~~~~-~~~~~~l~~SAT~~~ 142 (440)
T 1yks_A 75 GREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFLDPASIAARGWAAHRAR-ANESATILMTATPPG 142 (440)
T ss_dssp SSCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCCSHHHHHHHHHHHHHHH-TTSCEEEEECSSCTT
T ss_pred CccceeeecccchhHhhhCcccccCccEEEEECccccCcchHHHHHHHHHHhc-cCCceEEEEeCCCCc
Confidence 34455667777766666666678899999999999863333333345555443 234567888888753
No 201
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.06 E-value=1.3e-06 Score=72.97 Aligned_cols=28 Identities=18% Similarity=0.359 Sum_probs=25.6
Q ss_pred HhCCEEEEEccCCCCccchhhhhhhccc
Q psy2071 75 AQNQCIVLVGETGSGKTTQIPQWCVEYS 102 (302)
Q Consensus 75 ~~g~i~~liG~nGsGKSTll~~i~g~~~ 102 (302)
.+|++++|+||||||||||++.|++.++
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 3799999999999999999999998765
No 202
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=98.04 E-value=1.6e-06 Score=70.49 Aligned_cols=37 Identities=22% Similarity=0.244 Sum_probs=31.1
Q ss_pred HhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCc
Q psy2071 75 AQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQP 115 (302)
Q Consensus 75 ~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~ 115 (302)
.+|++++|+|+|||||||+.+.+++.+ |.+.+.+...
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~d~~ 42 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLDGDFL 42 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEEGGGG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeCccc
Confidence 468999999999999999999998865 7777776544
No 203
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=98.04 E-value=1.6e-05 Score=74.01 Aligned_cols=47 Identities=28% Similarity=0.323 Sum_probs=41.3
Q ss_pred hCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHH
Q psy2071 76 QNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMS 122 (302)
Q Consensus 76 ~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~ 122 (302)
++++++++|+|||||||++..+++.+.+..+.+.+.+.++.+.++..
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~ 143 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAARE 143 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHH
Confidence 67899999999999999999999999988889999888877765543
No 204
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.03 E-value=1.2e-06 Score=73.07 Aligned_cols=36 Identities=22% Similarity=0.154 Sum_probs=24.6
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcc
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEY 101 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~ 101 (302)
..+++++.+.+|++++|+|++||||||+.+.|+..+
T Consensus 14 ~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 14 GTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp ----------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 478999999999999999999999999999998765
No 205
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.03 E-value=1.6e-05 Score=70.02 Aligned_cols=26 Identities=27% Similarity=0.385 Sum_probs=22.9
Q ss_pred hCCEEEEEccCCCCccchhhhhhhcc
Q psy2071 76 QNQCIVLVGETGSGKTTQIPQWCVEY 101 (302)
Q Consensus 76 ~g~i~~liG~nGsGKSTll~~i~g~~ 101 (302)
.+..+.|.||+|+||||+.+.++...
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 46789999999999999999998754
No 206
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=98.01 E-value=1.8e-07 Score=88.88 Aligned_cols=107 Identities=18% Similarity=0.064 Sum_probs=61.9
Q ss_pred HHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhh--------ccccccceeeee
Q psy2071 72 TLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEM--------DCQLGQEVGYSI 143 (302)
Q Consensus 72 ~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~v~~~~ 143 (302)
..+++| +.|+||||||||||++++++... .+.+.+.|.+...........++...+ ...+.+++....
T Consensus 61 ~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~ 136 (499)
T 2dhr_A 61 ARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVG 136 (499)
T ss_dssp CCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTC
T ss_pred CCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHH
Confidence 334455 89999999999999999999764 677788776532211001111111111 111222221111
Q ss_pred eecCC----C------CccccccccCHHHHHHHhccccCCCCCcEEEEcCC
Q psy2071 144 RFEDC----S------SPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEA 184 (302)
Q Consensus 144 ~~~~~----~------~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~ 184 (302)
..... . ..+..+..|++|++++..++.+...+|++ |||+
T Consensus 137 ~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAatn~p~~--LD~a 185 (499)
T 2dhr_A 137 RKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDI--LDPA 185 (499)
T ss_dssp CCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEEEECCSCGGG--SCTT
T ss_pred HhhccCcCCCcHHHHHHHHHHHHHhcccccCccEEEEEecCChhh--cCcc
Confidence 00000 0 01234456899999999999999999987 8883
No 207
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.01 E-value=4.6e-06 Score=69.28 Aligned_cols=31 Identities=26% Similarity=0.270 Sum_probs=25.1
Q ss_pred CEEEEEccCCCCccchhhhhhhcccccCCCE
Q psy2071 78 QCIVLVGETGSGKTTQIPQWCVEYSKSVGAK 108 (302)
Q Consensus 78 ~i~~liG~nGsGKSTll~~i~g~~~~~~G~~ 108 (302)
..+.|.||+|+||||+++.++.........+
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~ 85 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSS 85 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeE
Confidence 7899999999999999999988765433333
No 208
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.01 E-value=1.6e-06 Score=78.54 Aligned_cols=53 Identities=17% Similarity=0.225 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchh
Q psy2071 65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRR 117 (302)
Q Consensus 65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~ 117 (302)
.+++++++.+.++.+++|+|++|+||||+++.+++.+.+..|.+.+.+.++..
T Consensus 44 ~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~ 96 (341)
T 2p67_A 44 QLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSS 96 (341)
T ss_dssp HHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred HHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCc
Confidence 45677777888999999999999999999999999998888888887776643
No 209
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=98.00 E-value=2.3e-05 Score=77.17 Aligned_cols=136 Identities=24% Similarity=0.256 Sum_probs=77.5
Q ss_pred HHHhCCEEEEEccCCCCccch--hhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhhccccccceeeeee-ecCCC
Q psy2071 73 LLAQNQCIVLVGETGSGKTTQ--IPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIR-FEDCS 149 (302)
Q Consensus 73 ~i~~g~i~~liG~nGsGKSTl--l~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~ 149 (302)
.+.+|+.+.+.||+|||||+. ++++.-+.. ..+.+.+.. |.+.-+..+...+.. . .+++... +....
T Consensus 237 ~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~-~~~~~lila--PTr~La~Q~~~~l~~---~----~i~~~~~~l~~v~ 306 (673)
T 2wv9_A 237 MLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQ-KRLRTAVLA--PTRVVAAEMAEALRG---L----PVRYLTPAVQREH 306 (673)
T ss_dssp GGSTTCEEEECCCTTTTTTTTHHHHHHHHHHH-TTCCEEEEE--SSHHHHHHHHHHTTT---S----CCEECCC---CCC
T ss_pred HHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHh-CCCcEEEEc--cHHHHHHHHHHHHhc---C----CeeeecccccccC
Confidence 445899999999999999996 333322222 223343332 444333333322211 1 1222211 11122
Q ss_pred CccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEEEecCH
Q psy2071 150 SPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILMGVLKEVIKQRADLKLVIMSATLDA 219 (302)
Q Consensus 150 ~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~~~l~~ll~~~~~~~~~ii~~thd~ 219 (302)
...+.+..++.|...+..+....+.+.+++|+||+|.-....+.....+.+++.. ....+.++++|...
T Consensus 307 tp~~ll~~l~~~~l~~~l~~~~~l~~l~lvViDEaH~~~~~~~~~~~~l~~~~~~-~~~~vl~~SAT~~~ 375 (673)
T 2wv9_A 307 SGNEIVDVMCHATLTHRLMSPLRVPNYNLFVMDEAHFTDPASIAARGYIATRVEA-GEAAAIFMTATPPG 375 (673)
T ss_dssp CSCCCEEEEEHHHHHHHHHSSSCCCCCSEEEEESTTCCCHHHHHHHHHHHHHHHT-TSCEEEEECSSCTT
T ss_pred CHHHHHHHHHhhhhHHHHhcccccccceEEEEeCCcccCccHHHHHHHHHHhccc-cCCcEEEEcCCCCh
Confidence 3345566678887766666666788999999999998644444444555555432 34568888888753
No 210
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=98.00 E-value=1.7e-05 Score=81.47 Aligned_cols=173 Identities=21% Similarity=0.269 Sum_probs=94.9
Q ss_pred hHHHHHHHHHHHhCCEEEEEccCCCCccch--hhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhhccccccceee
Q psy2071 64 FEYRTEFMTLLAQNQCIVLVGETGSGKTTQ--IPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGY 141 (302)
Q Consensus 64 ~~~~~~i~~~i~~g~i~~liG~nGsGKSTl--l~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 141 (302)
......+...+..|+.+.+.+|+|||||+. +.+... ...|...+ ...|.+.-+..+...+...+. +..++.
T Consensus 41 ~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~---~~~g~~vl-vl~PtraLa~Q~~~~l~~~~~---~~~v~~ 113 (997)
T 4a4z_A 41 DTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMA---HRNMTKTI-YTSPIKALSNQKFRDFKETFD---DVNIGL 113 (997)
T ss_dssp CHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHH---HHTTCEEE-EEESCGGGHHHHHHHHHTTC-----CCEEE
T ss_pred CHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHH---HhcCCeEE-EEeCCHHHHHHHHHHHHHHcC---CCeEEE
Confidence 344566677888999999999999999974 222221 12333222 234444433444444433221 112222
Q ss_pred eeeecCCCCccccccccCHHHHHHHhcc-ccCCCCCcEEEEcCCCCCCcchHHHHHHHHHHHHHc-CCCcEEEEEEec-C
Q psy2071 142 SIRFEDCSSPKTVLKYMTDGMLLREGMS-DPMLENYQVILLDEAHERTLATDILMGVLKEVIKQR-ADLKLVIMSATL-D 218 (302)
Q Consensus 142 ~~~~~~~~~~~~~~~~lS~G~~qr~~la-~al~~~p~lliLDE~~~p~~~lD~~~~~l~~ll~~~-~~~~~~ii~~th-d 218 (302)
... ......+..+-..|.|........ ...+.+.++||+||+|. ....+.. ..+.+++... ....+++++||- +
T Consensus 114 l~G-~~~~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH~-l~d~~~g-~~~e~ii~~l~~~v~iIlLSAT~~n 190 (997)
T 4a4z_A 114 ITG-DVQINPDANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHY-VNDQDRG-VVWEEVIIMLPQHVKFILLSATVPN 190 (997)
T ss_dssp ECS-SCEECTTSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTTC-CCTTCTT-CCHHHHHHHSCTTCEEEEEECCCTT
T ss_pred EeC-CCccCCCCCEEEECHHHHHHHHHhCchhhcCCCEEEEECccc-ccccchH-HHHHHHHHhcccCCCEEEEcCCCCC
Confidence 211 111122345566788877554432 33567899999999984 2222111 1122333333 345788999996 6
Q ss_pred HHHHHhhcc-----CCCeeeecCcCCccceeec
Q psy2071 219 AGKFQQYFD-----NAPLMNVPGRTHPVEIFYT 246 (302)
Q Consensus 219 ~~~~~~~~d-----~~~~l~i~g~~~~~~~~~~ 246 (302)
...+.++.+ .+.++...++..|.+.+..
T Consensus 191 ~~ef~~~l~~~~~~~~~vi~~~~r~~pl~~~v~ 223 (997)
T 4a4z_A 191 TYEFANWIGRTKQKNIYVISTPKRPVPLEINIW 223 (997)
T ss_dssp HHHHHHHHHHHHTCCEEEEECSSCSSCEEEEEE
T ss_pred hHHHHHHHhcccCCceEEEecCCCCccceEEEe
Confidence 666666664 3456666777778776543
No 211
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.99 E-value=1.5e-06 Score=83.64 Aligned_cols=41 Identities=17% Similarity=0.196 Sum_probs=35.6
Q ss_pred HHHhCCEEEEEccCCCCccchhhhhhhcccccCC-CEE-Eeec
Q psy2071 73 LLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVG-AKA-VACT 113 (302)
Q Consensus 73 ~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G-~~~-i~~~ 113 (302)
.+++|++++|+|+|||||||++++|++.+.|+.| .+. +++.
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD 407 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGD 407 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCc
Confidence 4679999999999999999999999999999886 675 5553
No 212
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.99 E-value=2.1e-06 Score=77.38 Aligned_cols=37 Identities=24% Similarity=0.284 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhC--CEEEEEccCCCCccchhhhhhhccc
Q psy2071 66 YRTEFMTLLAQN--QCIVLVGETGSGKTTQIPQWCVEYS 102 (302)
Q Consensus 66 ~~~~i~~~i~~g--~i~~liG~nGsGKSTll~~i~g~~~ 102 (302)
..+.+...+..| ..+.|.||+|+||||+++.++..+.
T Consensus 45 ~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 45 AVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp THHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 356667777777 4599999999999999999988754
No 213
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.97 E-value=8.9e-06 Score=76.23 Aligned_cols=27 Identities=19% Similarity=0.187 Sum_probs=23.3
Q ss_pred CCEEEEEccCCCCccchhhhhhhcccc
Q psy2071 77 NQCIVLVGETGSGKTTQIPQWCVEYSK 103 (302)
Q Consensus 77 g~i~~liG~nGsGKSTll~~i~g~~~~ 103 (302)
+..+.|.||+|+|||||++.++.....
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~ 156 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQ 156 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 457999999999999999999887643
No 214
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.97 E-value=6.4e-07 Score=86.25 Aligned_cols=44 Identities=16% Similarity=0.235 Sum_probs=33.9
Q ss_pred HHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEe
Q psy2071 67 RTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVA 111 (302)
Q Consensus 67 ~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~ 111 (302)
..+++..+ +|++++|+|||||||||+++++++.+.+..|.+.+.
T Consensus 99 l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~ 142 (543)
T 3m6a_A 99 VQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLG 142 (543)
T ss_dssp HHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCC
T ss_pred HHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEec
Confidence 33444444 699999999999999999999999987666655443
No 215
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=97.96 E-value=2.3e-05 Score=71.92 Aligned_cols=175 Identities=13% Similarity=0.066 Sum_probs=89.4
Q ss_pred CCCCCCCCChhhHHHHHhhcCCChhHHHHHHHHHHHhCCEEEEEccCCCCccchhh--hhhhcccc-cCCCEEEeecCch
Q psy2071 40 NPFTGYPYTPRYHELHRKRITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIP--QWCVEYSK-SVGAKAVACTQPR 116 (302)
Q Consensus 40 ~~~~~~~~~~~~~~l~~~r~~lp~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~--~i~g~~~~-~~G~~~i~~~~~~ 116 (302)
++|...+..+.+.+......-...+.+.......+..|.-+.+.+|+|||||+..- ++..+... ..+.+.+. .|.
T Consensus 40 ~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil--~P~ 117 (414)
T 3eiq_A 40 DSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVL--APT 117 (414)
T ss_dssp CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTTSCSCCEEEE--CSS
T ss_pred cCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhcCCceeEEEE--eCh
Confidence 45566677777776655543334445566666677788889999999999998642 22222221 22333332 233
Q ss_pred hhhHHHHHHHhhhhhccccccceeeeeeecC-------CCCccccccccCHHHHHHHhccccC-CCCCcEEEEcCCCCCC
Q psy2071 117 RVAAMSVAQRVSEEMDCQLGQEVGYSIRFED-------CSSPKTVLKYMTDGMLLREGMSDPM-LENYQVILLDEAHERT 188 (302)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-------~~~~~~~~~~lS~G~~qr~~la~al-~~~p~lliLDE~~~p~ 188 (302)
+.-+......+.... ......+........ .......+-..|.|...+......+ ..+.++||+||+|.-
T Consensus 118 ~~L~~q~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~vViDEah~~- 195 (414)
T 3eiq_A 118 RELAQQIQKVVMALG-DYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEM- 195 (414)
T ss_dssp HHHHHHHHHHHHHHG-GGSCCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTTCCEEEECSHHHH-
T ss_pred HHHHHHHHHHHHHHh-cccCceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccCcEEEEECHHHh-
Confidence 322222222222111 111111111111000 0012224455777877665544433 566899999998751
Q ss_pred cchHHH-HHHHHHHHHHc-CCCcEEEEEEecCHH
Q psy2071 189 LATDIL-MGVLKEVIKQR-ADLKLVIMSATLDAG 220 (302)
Q Consensus 189 ~~lD~~-~~~l~~ll~~~-~~~~~~ii~~thd~~ 220 (302)
.+.. ...+..++... ....++++++|...+
T Consensus 196 --~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~ 227 (414)
T 3eiq_A 196 --LSRGFKDQIYDIFQKLNSNTQVVLLSATMPSD 227 (414)
T ss_dssp --HHTTTHHHHHHHHTTSCTTCEEEEECSCCCHH
T ss_pred --hccCcHHHHHHHHHhCCCCCeEEEEEEecCHH
Confidence 1211 13445555544 344678888887543
No 216
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.94 E-value=7.2e-06 Score=74.35 Aligned_cols=34 Identities=21% Similarity=0.233 Sum_probs=27.8
Q ss_pred HHHHHH-HHHhCCEEEEEccCCCCccchhhhhhhc
Q psy2071 67 RTEFMT-LLAQNQCIVLVGETGSGKTTQIPQWCVE 100 (302)
Q Consensus 67 ~~~i~~-~i~~g~i~~liG~nGsGKSTll~~i~g~ 100 (302)
++.+.- -+++|+++.|.|++|||||||..+++..
T Consensus 111 LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 111 FDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp HHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 444432 4679999999999999999999998875
No 217
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=97.94 E-value=9.6e-05 Score=63.61 Aligned_cols=173 Identities=20% Similarity=0.198 Sum_probs=87.3
Q ss_pred CCCCCCCCChhhHHHHHhhcCCChhHHHHHHHHHHHhCCEEEEEccCCCCccch--hhhhhhcccccCC-CEEEeecCch
Q psy2071 40 NPFTGYPYTPRYHELHRKRITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQ--IPQWCVEYSKSVG-AKAVACTQPR 116 (302)
Q Consensus 40 ~~~~~~~~~~~~~~l~~~r~~lp~~~~~~~i~~~i~~g~i~~liG~nGsGKSTl--l~~i~g~~~~~~G-~~~i~~~~~~ 116 (302)
.+|..+...+.+.+......-...+.+.......+..|+-+.+.+|+|||||+. +.++..+.....+ .+.+. .|.
T Consensus 43 ~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~~~~~~lil--~Pt 120 (249)
T 3ber_A 43 KTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVL--TPT 120 (249)
T ss_dssp CCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEEE--CSS
T ss_pred CCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcCCCCceEEEE--eCC
Confidence 446666666777665554432233445566666777889999999999999985 3333332222222 34333 233
Q ss_pred hhhHHHHHHHhhhhhccccccceeeeeeecCCC--------CccccccccCHHHHHHHhcc--ccCCCCCcEEEEcCCCC
Q psy2071 117 RVAAMSVAQRVSEEMDCQLGQEVGYSIRFEDCS--------SPKTVLKYMTDGMLLREGMS--DPMLENYQVILLDEAHE 186 (302)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--------~~~~~~~~lS~G~~qr~~la--~al~~~p~lliLDE~~~ 186 (302)
+.-+..+...+..... ..+-.++.. ..... .....+-..|.|...+.... ...+.+.++||+||+|.
T Consensus 121 r~L~~q~~~~~~~~~~-~~~~~~~~~--~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~ 197 (249)
T 3ber_A 121 RELAFQISEQFEALGS-SIGVQSAVI--VGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADR 197 (249)
T ss_dssp HHHHHHHHHHHHHHHG-GGTCCEEEE--CTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECSHHH
T ss_pred HHHHHHHHHHHHHHhc-cCCeeEEEE--ECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEcChhh
Confidence 3222222222211110 001111111 11110 01123445677776554332 22467889999999762
Q ss_pred CCcchHH-HHHHHHHHHHHcC-CCcEEEEEEecCHH
Q psy2071 187 RTLATDI-LMGVLKEVIKQRA-DLKLVIMSATLDAG 220 (302)
Q Consensus 187 p~~~lD~-~~~~l~~ll~~~~-~~~~~ii~~thd~~ 220 (302)
-++. ....+..++.... ...+.++++|...+
T Consensus 198 ---l~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~ 230 (249)
T 3ber_A 198 ---ILNMDFETEVDKILKVIPRDRKTFLFSATMTKK 230 (249)
T ss_dssp ---HHHTTCHHHHHHHHHSSCSSSEEEEEESSCCHH
T ss_pred ---hhccChHHHHHHHHHhCCCCCeEEEEeccCCHH
Confidence 1121 1133445555443 44678888987643
No 218
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.94 E-value=2.4e-06 Score=78.44 Aligned_cols=43 Identities=16% Similarity=0.155 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEE
Q psy2071 65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAV 110 (302)
Q Consensus 65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i 110 (302)
.+.+++++.+++|++++|+||||||||||++.+++.. .|.+..
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~---~g~~~~ 199 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC---GGKALN 199 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH---CCEEEC
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc---CCcEEE
Confidence 4678899999999999999999999999999999853 565443
No 219
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.92 E-value=3.7e-05 Score=71.73 Aligned_cols=110 Identities=21% Similarity=0.291 Sum_probs=63.5
Q ss_pred CCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhhccccccceeeeeeecCCCCcccccc
Q psy2071 77 NQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRFEDCSSPKTVLK 156 (302)
Q Consensus 77 g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 156 (302)
+.+++++|++|+||||++..|+..+......+.+...++.+.++..+........+. .+. ........
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gv--------pv~--~~~~~~dp-- 167 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHI--------EVF--GNPQEKDA-- 167 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTC--------EEE--CCTTCCCH--
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCC--------cEE--ecCCCCCH--
Confidence 568999999999999999999887765444777777777777665554444332221 111 10001111
Q ss_pred ccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchH-HHHHHHHHHHHH
Q psy2071 157 YMTDGMLLREGMSDPMLENYQVILLDEAHERTLATD-ILMGVLKEVIKQ 204 (302)
Q Consensus 157 ~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD-~~~~~l~~ll~~ 204 (302)
....+-++..+-..+++++|+|.++. ...| .....+..+...
T Consensus 168 ----~~i~~~al~~a~~~~~DvVIIDTaGr--l~~d~~lm~el~~i~~~ 210 (443)
T 3dm5_A 168 ----IKLAKEGVDYFKSKGVDIIIVDTAGR--HKEDKALIEEMKQISNV 210 (443)
T ss_dssp ----HHHHHHHHHHHHHTTCSEEEEECCCC--SSCCHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHhCCCCEEEEECCCc--ccchHHHHHHHHHHHHh
Confidence 11122234444445799999999643 2233 333445555443
No 220
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=97.92 E-value=4e-05 Score=64.34 Aligned_cols=37 Identities=19% Similarity=0.212 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhCC---EEEEEccCCCCccchhhhhhhccc
Q psy2071 66 YRTEFMTLLAQNQ---CIVLVGETGSGKTTQIPQWCVEYS 102 (302)
Q Consensus 66 ~~~~i~~~i~~g~---i~~liG~nGsGKSTll~~i~g~~~ 102 (302)
..+.+...+..+. .+.|.||+|+||||+++.++....
T Consensus 31 ~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 31 VLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp HHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4556666777776 899999999999999999987654
No 221
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.92 E-value=8e-06 Score=73.12 Aligned_cols=123 Identities=7% Similarity=0.052 Sum_probs=74.3
Q ss_pred hHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhhccccccceeeee
Q psy2071 64 FEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSI 143 (302)
Q Consensus 64 ~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 143 (302)
+..++++.--+.+|+++.|.|++|+||||+.-+++.........+.+...... ...+..++..... ++.
T Consensus 55 ~~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE~s---~~~l~~R~~~~~~-------~i~- 123 (315)
T 3bh0_A 55 FTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEMG---KKENIKRLIVTAG-------SIN- 123 (315)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESSSC---HHHHHHHHHHHHT-------TCC-
T ss_pred hHHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECCCC---HHHHHHHHHHHHc-------CCC-
Confidence 44577777668999999999999999999988887543322223444333211 1111122111000 000
Q ss_pred eecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHHHHHHHHHHH
Q psy2071 144 RFEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILMGVLKEVIKQ 204 (302)
Q Consensus 144 ~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~~~l~~ll~~ 204 (302)
.... .... ..||.++++|+..|...+.++.+.+.|+ +...++.+...+..+...
T Consensus 124 -~~~l--~~~~-~~l~~~~~~~l~~a~~~l~~~~i~i~d~---~~~~~~~i~~~i~~l~~~ 177 (315)
T 3bh0_A 124 -AQKI--KAAR-RDFASEDWGKLSMAIGEISNSNINIFDK---AGQSVNYIWSKTRQTKRK 177 (315)
T ss_dssp -HHHH--HSCH-HHHCSSCHHHHHHHHHHHHTSCEEEECC---SCCBHHHHHHHHHHHHHT
T ss_pred -HHHH--hcCC-CCCCHHHHHHHHHHHHHHhCCCEEEECC---CCCCHHHHHHHHHHHHHh
Confidence 0000 0000 2378889999888877777889999999 877788776666666544
No 222
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.90 E-value=3.3e-06 Score=76.77 Aligned_cols=41 Identities=22% Similarity=0.243 Sum_probs=36.1
Q ss_pred CCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchh
Q psy2071 77 NQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRR 117 (302)
Q Consensus 77 g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~ 117 (302)
+.+++|+|++|||||||++.++|.+.+..|.+.+.+.++..
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~ 114 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSS 114 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC--
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCC
Confidence 67999999999999999999999999888999998877643
No 223
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.90 E-value=1.5e-05 Score=67.41 Aligned_cols=28 Identities=32% Similarity=0.387 Sum_probs=24.2
Q ss_pred hCCEEEEEccCCCCccchhhhhhhcccc
Q psy2071 76 QNQCIVLVGETGSGKTTQIPQWCVEYSK 103 (302)
Q Consensus 76 ~g~i~~liG~nGsGKSTll~~i~g~~~~ 103 (302)
.+..+.|.||+|+||||+++.++.....
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~ 78 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANE 78 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5789999999999999999998876543
No 224
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=97.90 E-value=0.00015 Score=60.03 Aligned_cols=148 Identities=20% Similarity=0.226 Sum_probs=69.8
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccch--hhhhhhcccccCC-CEEEeecCchhhhHHHHHHHhhhhhccccccceeee
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQ--IPQWCVEYSKSVG-AKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYS 142 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTl--l~~i~g~~~~~~G-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 142 (302)
+.......+..|.-+.+.+|+|||||.. ++++..+.....| .+.+.. |.+.-+......+...........+...
T Consensus 29 ~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~--Pt~~L~~q~~~~~~~~~~~~~~~~~~~~ 106 (206)
T 1vec_A 29 IQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIV--PTRELALQVSQICIQVSKHMGGAKVMAT 106 (206)
T ss_dssp HHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEEC--SCHHHHHHHHHHHHHHTTTSSSCCEEEE
T ss_pred HHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhcccCCCeeEEEEe--CcHHHHHHHHHHHHHHHhhcCCceEEEE
Confidence 4455566677888899999999999963 3333322221222 333332 3222222222222111110001111111
Q ss_pred eeecCCC--------CccccccccCHHHHHHHhc-cccCCCCCcEEEEcCCCCCCcchHHHHHHHHHHHHHcC-CCcEEE
Q psy2071 143 IRFEDCS--------SPKTVLKYMTDGMLLREGM-SDPMLENYQVILLDEAHERTLATDILMGVLKEVIKQRA-DLKLVI 212 (302)
Q Consensus 143 ~~~~~~~--------~~~~~~~~lS~G~~qr~~l-a~al~~~p~lliLDE~~~p~~~lD~~~~~l~~ll~~~~-~~~~~i 212 (302)
. .... .....+-..|.|......- ....+.+.+++|+||+|.-.. .+ ....+..++.... ...+.+
T Consensus 107 ~--g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~-~~-~~~~l~~i~~~~~~~~~~l~ 182 (206)
T 1vec_A 107 T--GGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLS-QD-FVQIMEDIILTLPKNRQILL 182 (206)
T ss_dssp C--SSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHHHHTS-TT-THHHHHHHHHHSCTTCEEEE
T ss_pred e--CCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEEChHHhHh-hC-cHHHHHHHHHhCCccceEEE
Confidence 1 1100 0112234456665544332 223467889999999874221 11 1234445555444 446788
Q ss_pred EEEecCH
Q psy2071 213 MSATLDA 219 (302)
Q Consensus 213 i~~thd~ 219 (302)
+++|...
T Consensus 183 ~SAT~~~ 189 (206)
T 1vec_A 183 YSATFPL 189 (206)
T ss_dssp EESCCCH
T ss_pred EEeeCCH
Confidence 8888754
No 225
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=97.89 E-value=0.00012 Score=62.55 Aligned_cols=166 Identities=17% Similarity=0.166 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHhCCEEEEEccCCCCccc--hhhhhhhccccc-CC-CEEEeecCchhhhHHHHHHHhhhhhcccccccee
Q psy2071 65 EYRTEFMTLLAQNQCIVLVGETGSGKTT--QIPQWCVEYSKS-VG-AKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVG 140 (302)
Q Consensus 65 ~~~~~i~~~i~~g~i~~liG~nGsGKST--ll~~i~g~~~~~-~G-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 140 (302)
.+.......+..|.-+.+.+|+|||||. +++++..+..+. .| .+.+. .|.+.-+..+...+..... ..+..+.
T Consensus 54 ~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~lil--~Pt~~L~~q~~~~~~~~~~-~~~~~~~ 130 (245)
T 3dkp_A 54 PIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALII--SPTRELASQIHRELIKISE-GTGFRIH 130 (245)
T ss_dssp HHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHCSCCSSSCCEEEE--CSSHHHHHHHHHHHHHHTT-TSCCCEE
T ss_pred HHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHhhcccCCceEEEE--eCCHHHHHHHHHHHHHHhc-ccCceEE
Confidence 3455555667788889999999999997 355544433322 23 23332 2333222222222211111 0011111
Q ss_pred eee-------eecCCCCccccccccCHHHHHHHhccc---cCCCCCcEEEEcCCCCCCcc-hHHHHHHHHHHHHHcC--C
Q psy2071 141 YSI-------RFEDCSSPKTVLKYMTDGMLLREGMSD---PMLENYQVILLDEAHERTLA-TDILMGVLKEVIKQRA--D 207 (302)
Q Consensus 141 ~~~-------~~~~~~~~~~~~~~lS~G~~qr~~la~---al~~~p~lliLDE~~~p~~~-lD~~~~~l~~ll~~~~--~ 207 (302)
... .+.........+-..|.|......... ..+.+.+++|+||+|.-... .......+..++.... .
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~i~~~~~~~~ 210 (245)
T 3dkp_A 131 MIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSHK 210 (245)
T ss_dssp CCCHHHHHHTTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCEEEESSHHHHHHHC--CHHHHHHHHHHHCCCTT
T ss_pred EEecCccHHHHhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccccCcEEEEeChHHhcccccccHHHHHHHHHHhcCCCC
Confidence 000 000111112234456777665544332 34678999999997642110 0012234455554432 3
Q ss_pred CcEEEEEEecCHH---HHHhhccCCCeee
Q psy2071 208 LKLVIMSATLDAG---KFQQYFDNAPLMN 233 (302)
Q Consensus 208 ~~~~ii~~thd~~---~~~~~~d~~~~l~ 233 (302)
..+.+++||..-+ .+..+..+...+.
T Consensus 211 ~~~~~~SAT~~~~v~~~~~~~l~~p~~i~ 239 (245)
T 3dkp_A 211 VRRAMFSATFAYDVEQWCKLNLDNVISVS 239 (245)
T ss_dssp CEEEEEESSCCHHHHHHHHHHSSSCEEEE
T ss_pred cEEEEEeccCCHHHHHHHHHhCCCCEEEE
Confidence 4678888987532 2334444444454
No 226
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=97.89 E-value=9.4e-05 Score=67.65 Aligned_cols=177 Identities=14% Similarity=0.135 Sum_probs=84.6
Q ss_pred CCCCCCCCChhhHHHHHhh-cCCChhHHHHHHHHHHHhC--CEEEEEccCCCCccch--hhhhhhcccccCC-CEEEeec
Q psy2071 40 NPFTGYPYTPRYHELHRKR-ITLPVFEYRTEFMTLLAQN--QCIVLVGETGSGKTTQ--IPQWCVEYSKSVG-AKAVACT 113 (302)
Q Consensus 40 ~~~~~~~~~~~~~~l~~~r-~~lp~~~~~~~i~~~i~~g--~i~~liG~nGsGKSTl--l~~i~g~~~~~~G-~~~i~~~ 113 (302)
.+|......+...+..... ..-| ..+.......+..| ..+.+.+|+|||||.. ++++..+.....+ .+.+.
T Consensus 25 ~~f~~~~l~~~l~~~l~~~g~~~~-~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil-- 101 (412)
T 3fht_A 25 KSFEELRLKPQLLQGVYAMGFNRP-SKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCL-- 101 (412)
T ss_dssp SCTGGGTCCHHHHHHHHHTTCCSC-CHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEE--
T ss_pred CCHhhCCCCHHHHHHHHHcCCCCC-CHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhcCCCCCEEEE--
Confidence 3455555555555544332 2222 23344445555555 8899999999999985 3333333222222 34333
Q ss_pred CchhhhHHHHHHHhhhhhccccccceeeeeeecCC---CCccccccccCHHHHHHHhccc--cCCCCCcEEEEcCCCCCC
Q psy2071 114 QPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRFEDC---SSPKTVLKYMTDGMLLREGMSD--PMLENYQVILLDEAHERT 188 (302)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~~~~~~~~lS~G~~qr~~la~--al~~~p~lliLDE~~~p~ 188 (302)
.|.+.-+..+...+...........+++....... ......+-..|.|...+..... .-+.+.++||+||+|.-.
T Consensus 102 ~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~iViDEah~~~ 181 (412)
T 3fht_A 102 SPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMI 181 (412)
T ss_dssp CSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTTCCCCCSEEEECHHHHHHHHTTSCSSCGGGCCEEEEETHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhhhcCCCCEEEECchHHHHHHHhcCCcChhhCcEEEEeCHHHHh
Confidence 34333333332222221111111222222211111 1112245567888776655332 234789999999987421
Q ss_pred cchHHHHHHHHHHHHHcC-CCcEEEEEEecCHH
Q psy2071 189 LATDILMGVLKEVIKQRA-DLKLVIMSATLDAG 220 (302)
Q Consensus 189 ~~lD~~~~~l~~ll~~~~-~~~~~ii~~thd~~ 220 (302)
.... ....+..+..... ...++++++|...+
T Consensus 182 ~~~~-~~~~~~~~~~~~~~~~~~i~~SAT~~~~ 213 (412)
T 3fht_A 182 ATQG-HQDQSIRIQRMLPRNCQMLLFSATFEDS 213 (412)
T ss_dssp STTT-THHHHHHHHHTSCTTCEEEEEESCCCHH
T ss_pred hcCC-cHHHHHHHHhhCCCCceEEEEEeecCHH
Confidence 1001 1122223333322 34678888887653
No 227
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.89 E-value=1e-05 Score=72.68 Aligned_cols=35 Identities=26% Similarity=0.275 Sum_probs=28.2
Q ss_pred HHHHH-HHHHhCCEEEEEccCCCCccchhhhhhhcc
Q psy2071 67 RTEFM-TLLAQNQCIVLVGETGSGKTTQIPQWCVEY 101 (302)
Q Consensus 67 ~~~i~-~~i~~g~i~~liG~nGsGKSTll~~i~g~~ 101 (302)
++.+. --+++|+++.|.|++||||||+..+++...
T Consensus 96 LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 96 LDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp HHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred HHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHH
Confidence 44443 246899999999999999999998887653
No 228
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=97.88 E-value=2.4e-06 Score=70.47 Aligned_cols=25 Identities=24% Similarity=0.526 Sum_probs=22.6
Q ss_pred EEEEEccCCCCccchhhhhhhcccc
Q psy2071 79 CIVLVGETGSGKTTQIPQWCVEYSK 103 (302)
Q Consensus 79 i~~liG~nGsGKSTll~~i~g~~~~ 103 (302)
.++|+|+||||||||++.++|...+
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~ 55 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFN 55 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCC
Confidence 5899999999999999999997654
No 229
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.87 E-value=3.2e-06 Score=68.35 Aligned_cols=27 Identities=33% Similarity=0.458 Sum_probs=24.3
Q ss_pred hCCEEEEEccCCCCccchhhhhhhccc
Q psy2071 76 QNQCIVLVGETGSGKTTQIPQWCVEYS 102 (302)
Q Consensus 76 ~g~i~~liG~nGsGKSTll~~i~g~~~ 102 (302)
.|.+++|+|+|||||||+.+.|++.+.
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 467899999999999999999998764
No 230
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=97.86 E-value=0.00019 Score=60.44 Aligned_cols=147 Identities=20% Similarity=0.219 Sum_probs=70.8
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccc--hhhhhhhcccc-------cCCCEEEeecCchhhhHHHHHHHhhhhhccccc
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTT--QIPQWCVEYSK-------SVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLG 136 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKST--ll~~i~g~~~~-------~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (302)
+.......+..|.-+.+.+|+|||||. +++++..+... ..+.+.+.. |.+.-+..+...+...... +
T Consensus 46 ~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~lil~--Pt~~L~~q~~~~~~~~~~~--~ 121 (228)
T 3iuy_A 46 IQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLT--PTRELALHVEAECSKYSYK--G 121 (228)
T ss_dssp HHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC---------CCCSEEEEC--SSHHHHHHHHHHHHHHCCT--T
T ss_pred HHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCCcEEEEe--CCHHHHHHHHHHHHHhccc--C
Confidence 345555667788889999999999997 44444332211 112333322 3332222222222221100 1
Q ss_pred cceeeeeeecCCCC------ccccccccCHHHHHHHhcccc-CCCCCcEEEEcCCCCCCcchHH-HHHHHHHHHHHcC-C
Q psy2071 137 QEVGYSIRFEDCSS------PKTVLKYMTDGMLLREGMSDP-MLENYQVILLDEAHERTLATDI-LMGVLKEVIKQRA-D 207 (302)
Q Consensus 137 ~~v~~~~~~~~~~~------~~~~~~~lS~G~~qr~~la~a-l~~~p~lliLDE~~~p~~~lD~-~~~~l~~ll~~~~-~ 207 (302)
..+........... ....+-..|.|.......... .+.+.+++|+||+|. -++. ....+..++.... +
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~---~~~~~~~~~~~~i~~~~~~~ 198 (228)
T 3iuy_A 122 LKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNSVNLRSITYLVIDEADK---MLDMEFEPQIRKILLDVRPD 198 (228)
T ss_dssp CCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHTTCCCCTTCCEEEECCHHH---HHHTTCHHHHHHHHHHSCSS
T ss_pred ceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCcCcccceEEEEECHHH---HhccchHHHHHHHHHhCCcC
Confidence 11111100000000 011344567777665443333 367899999999763 1111 1134445555443 4
Q ss_pred CcEEEEEEecCH
Q psy2071 208 LKLVIMSATLDA 219 (302)
Q Consensus 208 ~~~~ii~~thd~ 219 (302)
..+.++++|..-
T Consensus 199 ~~~l~~SAT~~~ 210 (228)
T 3iuy_A 199 RQTVMTSATWPD 210 (228)
T ss_dssp CEEEEEESCCCH
T ss_pred CeEEEEEeeCCH
Confidence 467788888654
No 231
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.86 E-value=7.4e-06 Score=72.78 Aligned_cols=28 Identities=21% Similarity=0.355 Sum_probs=25.2
Q ss_pred HHhCCEEEEEccCCCCccchhhhhhhcc
Q psy2071 74 LAQNQCIVLVGETGSGKTTQIPQWCVEY 101 (302)
Q Consensus 74 i~~g~i~~liG~nGsGKSTll~~i~g~~ 101 (302)
+..+..+.|.||+||||||+.+.++...
T Consensus 46 ~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 46 MTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 4678899999999999999999998865
No 232
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=97.83 E-value=0.00013 Score=68.69 Aligned_cols=176 Identities=14% Similarity=0.137 Sum_probs=81.3
Q ss_pred CCCCCCCChhhHHHHHhh-cCCChhHHHHHHHHHHHhC--CEEEEEccCCCCccch--hhhhhhcccccCC-CEEEeecC
Q psy2071 41 PFTGYPYTPRYHELHRKR-ITLPVFEYRTEFMTLLAQN--QCIVLVGETGSGKTTQ--IPQWCVEYSKSVG-AKAVACTQ 114 (302)
Q Consensus 41 ~~~~~~~~~~~~~l~~~r-~~lp~~~~~~~i~~~i~~g--~i~~liG~nGsGKSTl--l~~i~g~~~~~~G-~~~i~~~~ 114 (302)
+|......+...+..... ..-| +.+.......+-.| ..+.+.||+|||||.. ++++..+.....+ .+.+ ..
T Consensus 93 ~f~~~~l~~~l~~~l~~~g~~~p-~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~~~~~~li--l~ 169 (479)
T 3fmp_B 93 SFEELRLKPQLLQGVYAMGFNRP-SKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLC--LS 169 (479)
T ss_dssp CSGGGTCCHHHHHHHHHTTCCSC-CHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTTSCSCCEEE--EC
T ss_pred CHHHcCCCHHHHHHHHHcCCCCC-CHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhcCCCCcEEE--Ee
Confidence 344444455444433322 2222 22344444555555 8999999999999975 3333333221112 3333 23
Q ss_pred chhhhHHHHHHHhhhhhccccccceeeeeeecC---CCCccccccccCHHHHHHHhcccc--CCCCCcEEEEcCCCCCCc
Q psy2071 115 PRRVAAMSVAQRVSEEMDCQLGQEVGYSIRFED---CSSPKTVLKYMTDGMLLREGMSDP--MLENYQVILLDEAHERTL 189 (302)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~~~~~~~lS~G~~qr~~la~a--l~~~p~lliLDE~~~p~~ 189 (302)
|.+.-+..+...+...........+.+...... .......+-..+.|.......... -+.+.++||+||+|.-..
T Consensus 170 Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEah~~~~ 249 (479)
T 3fmp_B 170 PTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIA 249 (479)
T ss_dssp SSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTTCCCCCSEEEECHHHHHHHHTTSCCCCGGGCCEEEECCHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHhhCCCceEEEEeCCccccccccCCCCEEEECchHHHHHHHhcCCcCcccCCEEEEECHHHHhh
Confidence 433322222222221111111112222221111 111122455577777766554322 347899999999874221
Q ss_pred chHHHHHHHHHHHHHcC-CCcEEEEEEecCHH
Q psy2071 190 ATDILMGVLKEVIKQRA-DLKLVIMSATLDAG 220 (302)
Q Consensus 190 ~lD~~~~~l~~ll~~~~-~~~~~ii~~thd~~ 220 (302)
... ....+..+..... ...++++++|...+
T Consensus 250 ~~~-~~~~~~~i~~~~~~~~~~i~~SAT~~~~ 280 (479)
T 3fmp_B 250 TQG-HQDQSIRIQRMLPRNCQMLLFSATFEDS 280 (479)
T ss_dssp STT-HHHHHHHHHTTSCTTSEEEEEESCCCHH
T ss_pred cCC-cHHHHHHHHhhCCccceEEEEeCCCCHH
Confidence 111 1122333333332 34678888887664
No 233
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.79 E-value=5.1e-05 Score=64.42 Aligned_cols=27 Identities=15% Similarity=0.095 Sum_probs=21.8
Q ss_pred HhCCEEEEEccCCCCccchhhhhhhcc
Q psy2071 75 AQNQCIVLVGETGSGKTTQIPQWCVEY 101 (302)
Q Consensus 75 ~~g~i~~liG~nGsGKSTll~~i~g~~ 101 (302)
.+|.++.+.|+.|+||||++-.++.-+
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~ 36 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRL 36 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHH
Confidence 578999999999999999876665444
No 234
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.74 E-value=1.9e-05 Score=79.52 Aligned_cols=30 Identities=27% Similarity=0.262 Sum_probs=26.6
Q ss_pred HHHhCCEEEEEccCCCCccchhhhhhhccc
Q psy2071 73 LLAQNQCIVLVGETGSGKTTQIPQWCVEYS 102 (302)
Q Consensus 73 ~i~~g~i~~liG~nGsGKSTll~~i~g~~~ 102 (302)
.+.+++.++|+|||||||||+++++++.+.
T Consensus 234 ~i~~~~~vLL~Gp~GtGKTtLarala~~l~ 263 (806)
T 1ypw_A 234 GVKPPRGILLYGPPGTGKTLIARAVANETG 263 (806)
T ss_dssp CCCCCCEEEECSCTTSSHHHHHHHHHHTTT
T ss_pred CCCCCCeEEEECcCCCCHHHHHHHHHHHcC
Confidence 356788999999999999999999998764
No 235
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.73 E-value=1.9e-05 Score=69.10 Aligned_cols=27 Identities=30% Similarity=0.357 Sum_probs=23.5
Q ss_pred HhCCEEEEEccCCCCccchhhhhhhcc
Q psy2071 75 AQNQCIVLVGETGSGKTTQIPQWCVEY 101 (302)
Q Consensus 75 ~~g~i~~liG~nGsGKSTll~~i~g~~ 101 (302)
..+..+.|.||+|+||||+.+.++...
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 567789999999999999999997654
No 236
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=97.73 E-value=7e-06 Score=76.63 Aligned_cols=32 Identities=16% Similarity=0.325 Sum_probs=27.6
Q ss_pred HHhCCEEEEEccCCCCccchhhhhhhcccccC
Q psy2071 74 LAQNQCIVLVGETGSGKTTQIPQWCVEYSKSV 105 (302)
Q Consensus 74 i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~ 105 (302)
+..|++++|+|||||||||++.+|+++..+.+
T Consensus 23 ~~~~~~~~i~G~nG~GKstll~ai~~~~~~~~ 54 (430)
T 1w1w_A 23 FGESNFTSIIGPNGSGKSNMMDAISFVLGVRS 54 (430)
T ss_dssp CTTCSEEEEECSTTSSHHHHHHHHHHHTTC--
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHHhhhcccc
Confidence 45689999999999999999999999887754
No 237
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=97.73 E-value=0.00018 Score=59.60 Aligned_cols=36 Identities=14% Similarity=0.276 Sum_probs=26.7
Q ss_pred HHHHHHHHHHhCC--EEEEEccCCCCccchhhhhhhcc
Q psy2071 66 YRTEFMTLLAQNQ--CIVLVGETGSGKTTQIPQWCVEY 101 (302)
Q Consensus 66 ~~~~i~~~i~~g~--i~~liG~nGsGKSTll~~i~g~~ 101 (302)
..+.+...+..+. .+.|.||.|+||||+++.++..+
T Consensus 25 ~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 25 VIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp HHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3445555565553 48999999999999999887643
No 238
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=97.72 E-value=6.5e-05 Score=68.16 Aligned_cols=28 Identities=25% Similarity=0.239 Sum_probs=24.0
Q ss_pred HhCCEEEEEccCCCCccchhhhhhhccc
Q psy2071 75 AQNQCIVLVGETGSGKTTQIPQWCVEYS 102 (302)
Q Consensus 75 ~~g~i~~liG~nGsGKSTll~~i~g~~~ 102 (302)
..+..+.|.||+|+||||+++.++....
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~ 69 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLE 69 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 4567899999999999999999987654
No 239
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=97.72 E-value=0.00028 Score=59.03 Aligned_cols=172 Identities=16% Similarity=0.169 Sum_probs=79.8
Q ss_pred CCCCCCCCChhhHHHHHhhcCCC-hhHHHHHHHHHHHhCCEEEEEccCCCCccchh--hhhhhcccccCC--CEEEeecC
Q psy2071 40 NPFTGYPYTPRYHELHRKRITLP-VFEYRTEFMTLLAQNQCIVLVGETGSGKTTQI--PQWCVEYSKSVG--AKAVACTQ 114 (302)
Q Consensus 40 ~~~~~~~~~~~~~~l~~~r~~lp-~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll--~~i~g~~~~~~G--~~~i~~~~ 114 (302)
+.|......+...+..... .+. -..+.......+..|.-+.+.+|+|+|||... .++..+ ....+ .+.+..
T Consensus 14 ~~f~~~~l~~~l~~~l~~~-g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~-~~~~~~~~~lil~-- 89 (220)
T 1t6n_A 14 SGFRDFLLKPELLRAIVDC-GFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQL-EPVTGQVSVLVMC-- 89 (220)
T ss_dssp CCSTTSCCCHHHHHHHHHT-TCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHC-CCCTTCCCEEEEC--
T ss_pred CCHhhcCCCHHHHHHHHHC-CCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhh-hccCCCEEEEEEe--
Confidence 3455555555555444332 121 23344555556667888999999999999743 333222 22222 343332
Q ss_pred chhhhHHHHHHHhhhhhccccccceeeeeeecCCCC---------ccccccccCHHHHHHHhc-cccCCCCCcEEEEcCC
Q psy2071 115 PRRVAAMSVAQRVSEEMDCQLGQEVGYSIRFEDCSS---------PKTVLKYMTDGMLLREGM-SDPMLENYQVILLDEA 184 (302)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~---------~~~~~~~lS~G~~qr~~l-a~al~~~p~lliLDE~ 184 (302)
|.+.-+......+........+..+.... ..... ....+-..|.|......- ....+.+.+++|+||+
T Consensus 90 Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~--g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEa 167 (220)
T 1t6n_A 90 HTRELAFQISKEYERFSKYMPNVKVAVFF--GGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDEC 167 (220)
T ss_dssp SCHHHHHHHHHHHHHHTTTSTTCCEEEES--CCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEESH
T ss_pred CCHHHHHHHHHHHHHHHhhCCCceEEEEe--CCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhCCCCcccCCEEEEcCH
Confidence 32222222222221111000011111111 11000 011334456665544332 2234678899999998
Q ss_pred CCCCcchHHHHHHHHHHHHHcC-CCcEEEEEEecC
Q psy2071 185 HERTLATDILMGVLKEVIKQRA-DLKLVIMSATLD 218 (302)
Q Consensus 185 ~~p~~~lD~~~~~l~~ll~~~~-~~~~~ii~~thd 218 (302)
|.-....+ ....+..++.... ...++++++|..
T Consensus 168 h~~~~~~~-~~~~~~~i~~~~~~~~~~i~~SAT~~ 201 (220)
T 1t6n_A 168 DKMLEQLD-MRRDVQEIFRMTPHEKQVMMFSATLS 201 (220)
T ss_dssp HHHHSSHH-HHHHHHHHHHTSCSSSEEEEEESCCC
T ss_pred HHHhcccC-cHHHHHHHHHhCCCcCeEEEEEeecC
Confidence 74322111 1244555555443 345778888864
No 240
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.71 E-value=1.7e-05 Score=70.87 Aligned_cols=28 Identities=29% Similarity=0.316 Sum_probs=24.1
Q ss_pred CCEEEEEccCCCCccchhhhhhhccccc
Q psy2071 77 NQCIVLVGETGSGKTTQIPQWCVEYSKS 104 (302)
Q Consensus 77 g~i~~liG~nGsGKSTll~~i~g~~~~~ 104 (302)
+..+.|.||+|+||||+++.++......
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~~ 64 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKKR 64 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 4689999999999999999998876544
No 241
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=97.69 E-value=0.00014 Score=61.48 Aligned_cols=151 Identities=13% Similarity=0.041 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHhCCEEEEEccCCCCccch--hhhhhhcccccCC-CEEEeecCchhhhHHHHHHHhhhhhccccccceee
Q psy2071 65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQ--IPQWCVEYSKSVG-AKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGY 141 (302)
Q Consensus 65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTl--l~~i~g~~~~~~G-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 141 (302)
.+.......+..|.-+.+.+|+|||||.. ++++..+.....| .+.+.. |.+.-+......+........+-.+..
T Consensus 49 ~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~lil~--Pt~~L~~q~~~~~~~~~~~~~~~~~~~ 126 (230)
T 2oxc_A 49 PVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQILILA--PTREIAVQIHSVITAIGIKMEGLECHV 126 (230)
T ss_dssp HHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEEC--SSHHHHHHHHHHHHHHTTTSTTCCEEE
T ss_pred HHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEe--CCHHHHHHHHHHHHHHhcccCCceEEE
Confidence 34455556677888899999999999974 4444443322222 333332 332222222222211110000111111
Q ss_pred eeeecCCC-------CccccccccCHHHHHHHhcc-ccCCCCCcEEEEcCCCCCCcchHHHHHHHHHHHHHcC-CCcEEE
Q psy2071 142 SIRFEDCS-------SPKTVLKYMTDGMLLREGMS-DPMLENYQVILLDEAHERTLATDILMGVLKEVIKQRA-DLKLVI 212 (302)
Q Consensus 142 ~~~~~~~~-------~~~~~~~~lS~G~~qr~~la-~al~~~p~lliLDE~~~p~~~lD~~~~~l~~ll~~~~-~~~~~i 212 (302)
. ..... .....+-..|.|......-. ...+.+.+++|+||+|.-... ......+..++.... ...+.+
T Consensus 127 ~--~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~~~~~-~~~~~~~~~i~~~~~~~~~~l~ 203 (230)
T 2oxc_A 127 F--IGGTPLSQDKTRLKKCHIAVGSPGRIKQLIELDYLNPGSIRLFILDEADKLLEE-GSFQEQINWIYSSLPASKQMLA 203 (230)
T ss_dssp E--CTTSCHHHHHHHTTSCSEEEECHHHHHHHHHTTSSCGGGCCEEEESSHHHHHST-TSSHHHHHHHHHHSCSSCEEEE
T ss_pred E--eCCCCHHHHHHhccCCCEEEECHHHHHHHHhcCCcccccCCEEEeCCchHhhcC-cchHHHHHHHHHhCCCCCeEEE
Confidence 1 11100 01123344566665554322 223567889999997642110 001234445555444 345778
Q ss_pred EEEecCHH
Q psy2071 213 MSATLDAG 220 (302)
Q Consensus 213 i~~thd~~ 220 (302)
+++|...+
T Consensus 204 lSAT~~~~ 211 (230)
T 2oxc_A 204 VSATYPEF 211 (230)
T ss_dssp EESCCCHH
T ss_pred EEeccCHH
Confidence 88887644
No 242
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.68 E-value=1e-05 Score=65.94 Aligned_cols=31 Identities=26% Similarity=0.187 Sum_probs=27.0
Q ss_pred HhCCEEEEEccCCCCccchhhhhhhcccccCC
Q psy2071 75 AQNQCIVLVGETGSGKTTQIPQWCVEYSKSVG 106 (302)
Q Consensus 75 ~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G 106 (302)
.+|++++|+|++||||||+.+.+.+.+.+ .|
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g 33 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-HG 33 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh-CC
Confidence 36899999999999999999999998765 55
No 243
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=97.68 E-value=0.00027 Score=59.91 Aligned_cols=172 Identities=21% Similarity=0.217 Sum_probs=82.1
Q ss_pred CCCCCCChhhHHHHHhhcCCChhHHHHHHHHHHHhCCEEEEEccCCCCccch--hhhhhhccc----ccCC-CEEEeecC
Q psy2071 42 FTGYPYTPRYHELHRKRITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQ--IPQWCVEYS----KSVG-AKAVACTQ 114 (302)
Q Consensus 42 ~~~~~~~~~~~~l~~~r~~lp~~~~~~~i~~~i~~g~i~~liG~nGsGKSTl--l~~i~g~~~----~~~G-~~~i~~~~ 114 (302)
|...+......+......--..+.+.......+..|+-+.+.+|+|||||+. ++++..+.. ...| .+.+. .
T Consensus 27 f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil--~ 104 (236)
T 2pl3_A 27 FSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLII--S 104 (236)
T ss_dssp GGGSCCCHHHHHHHHHTTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEE--C
T ss_pred HhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEEEE--e
Confidence 4455555666655544322223444555666777888899999999999984 333332221 1123 33332 2
Q ss_pred chhhhHHHHHHHhhhhhccccccceeeeeeecCCC-----CccccccccCHHHHHHHhcc--ccCCCCCcEEEEcCCCCC
Q psy2071 115 PRRVAAMSVAQRVSEEMDCQLGQEVGYSIRFEDCS-----SPKTVLKYMTDGMLLREGMS--DPMLENYQVILLDEAHER 187 (302)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-----~~~~~~~~lS~G~~qr~~la--~al~~~p~lliLDE~~~p 187 (302)
|.+.-+......+.... ....-.++......... .....+-..|.|...+.... ...+.+.+++|+||+|.-
T Consensus 105 Pt~~L~~q~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~~ 183 (236)
T 2pl3_A 105 PTRELAYQTFEVLRKVG-KNHDFSAGLIIGGKDLKHEAERINNINILVCTPGRLLQHMDETVSFHATDLQMLVLDEADRI 183 (236)
T ss_dssp SSHHHHHHHHHHHHHHT-TTSSCCEEEECCC--CHHHHHHHTTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEETTHHHH
T ss_pred CCHHHHHHHHHHHHHHh-CCCCeeEEEEECCCCHHHHHHhCCCCCEEEECHHHHHHHHHhcCCcccccccEEEEeChHHH
Confidence 33322222222222111 11111111111000000 01123445677766554322 234578899999997731
Q ss_pred CcchHHH-HHHHHHHHHHcC-CCcEEEEEEecCH
Q psy2071 188 TLATDIL-MGVLKEVIKQRA-DLKLVIMSATLDA 219 (302)
Q Consensus 188 ~~~lD~~-~~~l~~ll~~~~-~~~~~ii~~thd~ 219 (302)
+|.. ...+..++.... ...+.++++|...
T Consensus 184 ---~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~ 214 (236)
T 2pl3_A 184 ---LDMGFADTMNAVIENLPKKRQTLLFSATQTK 214 (236)
T ss_dssp ---HHTTTHHHHHHHHHTSCTTSEEEEEESSCCH
T ss_pred ---hcCCcHHHHHHHHHhCCCCCeEEEEEeeCCH
Confidence 1211 134445555443 3357888888754
No 244
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.68 E-value=4.8e-06 Score=70.38 Aligned_cols=25 Identities=24% Similarity=0.322 Sum_probs=22.9
Q ss_pred CCEEEEEccCCCCccchhhhhhhcc
Q psy2071 77 NQCIVLVGETGSGKTTQIPQWCVEY 101 (302)
Q Consensus 77 g~i~~liG~nGsGKSTll~~i~g~~ 101 (302)
+.+++|+|++||||||+.+.+++.+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999998866
No 245
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=97.67 E-value=8.2e-06 Score=67.53 Aligned_cols=23 Identities=26% Similarity=0.601 Sum_probs=21.1
Q ss_pred EEEEEccCCCCccchhhhhhhcc
Q psy2071 79 CIVLVGETGSGKTTQIPQWCVEY 101 (302)
Q Consensus 79 i~~liG~nGsGKSTll~~i~g~~ 101 (302)
.++|+|+||||||||++.++|..
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999999974
No 246
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.66 E-value=0.00016 Score=56.76 Aligned_cols=35 Identities=20% Similarity=0.213 Sum_probs=27.2
Q ss_pred HHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcc
Q psy2071 67 RTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEY 101 (302)
Q Consensus 67 ~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~ 101 (302)
.+.+......+.-+.|.||+|+|||++.+.+....
T Consensus 14 ~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 14 RRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp HHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred HHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 34444445677789999999999999999887643
No 247
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=97.66 E-value=1.5e-05 Score=72.62 Aligned_cols=30 Identities=20% Similarity=0.235 Sum_probs=26.5
Q ss_pred HHHHHHHhCCEEEEEccCCCCccchhhhhhh
Q psy2071 69 EFMTLLAQNQCIVLVGETGSGKTTQIPQWCV 99 (302)
Q Consensus 69 ~i~~~i~~g~i~~liG~nGsGKSTll~~i~g 99 (302)
++++.+.+| +++|+|||||||||++.+|.+
T Consensus 19 ~~~~~~~~g-~~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 19 PGTLNFPEG-VTGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred eeEEEEcCC-eEEEECCCCCChhHHHHHHHH
Confidence 445667788 999999999999999999987
No 248
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.63 E-value=1.8e-05 Score=78.02 Aligned_cols=37 Identities=30% Similarity=0.251 Sum_probs=29.6
Q ss_pred HHHHhCCEEEEEccCCCCccchhhhhhhcccc--cCCCE
Q psy2071 72 TLLAQNQCIVLVGETGSGKTTQIPQWCVEYSK--SVGAK 108 (302)
Q Consensus 72 ~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~--~~G~~ 108 (302)
+.++++..++|+|++|+|||||++.+++...+ ..|.+
T Consensus 4 ~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V 42 (665)
T 2dy1_A 4 EGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV 42 (665)
T ss_dssp --CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG
T ss_pred CccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee
Confidence 34678899999999999999999999987654 45655
No 249
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=97.62 E-value=0.00021 Score=64.92 Aligned_cols=150 Identities=17% Similarity=0.171 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHhCCEEEEEccCCCCccchh--hhhhhcccccCC-CEEEeecCchhhhHHHHHHHhhhhhccccccceee
Q psy2071 65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQI--PQWCVEYSKSVG-AKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGY 141 (302)
Q Consensus 65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll--~~i~g~~~~~~G-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 141 (302)
.+.......+..|.-+.+.+|+|+|||... .++..+.....+ .+.+.. |.+.-+......+...........+..
T Consensus 33 ~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~--P~~~L~~q~~~~~~~~~~~~~~~~~~~ 110 (391)
T 1xti_A 33 EVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMC--HTRELAFQISKEYERFSKYMPNVKVAV 110 (391)
T ss_dssp HHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEEC--SCHHHHHHHHHHHHHHTTTCTTCCEEE
T ss_pred HHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhcccCCCeeEEEEC--CCHHHHHHHHHHHHHHHhhCCCeEEEE
Confidence 344555566777888999999999999853 333222221122 444432 332222222222211111000111111
Q ss_pred eeeecCCCC---------ccccccccCHHHHHHHhccc-cCCCCCcEEEEcCCCCCCcchHHHHHHHHHHHHHcC-CCcE
Q psy2071 142 SIRFEDCSS---------PKTVLKYMTDGMLLREGMSD-PMLENYQVILLDEAHERTLATDILMGVLKEVIKQRA-DLKL 210 (302)
Q Consensus 142 ~~~~~~~~~---------~~~~~~~lS~G~~qr~~la~-al~~~p~lliLDE~~~p~~~lD~~~~~l~~ll~~~~-~~~~ 210 (302)
. ...... ....+-..|.+......... ..+.+.+++|+||+|.-....+. ...+..++.... ...+
T Consensus 111 ~--~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDEaH~~~~~~~~-~~~~~~~~~~~~~~~~~ 187 (391)
T 1xti_A 111 F--FGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDM-RRDVQEIFRMTPHEKQV 187 (391)
T ss_dssp E--CTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEECSHHHHTSSHHH-HHHHHHHHHTSCSSSEE
T ss_pred E--eCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCCccccccCEEEEeCHHHHhhccch-HHHHHHHHhhCCCCceE
Confidence 1 111100 01134456767665543332 24678999999998854332222 234445554433 3457
Q ss_pred EEEEEecCH
Q psy2071 211 VIMSATLDA 219 (302)
Q Consensus 211 ~ii~~thd~ 219 (302)
+++++|...
T Consensus 188 i~~SAT~~~ 196 (391)
T 1xti_A 188 MMFSATLSK 196 (391)
T ss_dssp EEEESSCCS
T ss_pred EEEEeeCCH
Confidence 888888643
No 250
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=97.61 E-value=0.00053 Score=61.43 Aligned_cols=157 Identities=19% Similarity=0.248 Sum_probs=73.4
Q ss_pred HHHHHHhCCEEEEEccCCCCccchhhhhhh-cccccCC-CEEEeecCchhhhHHHHHHHhhhhhccccccceeeeeeecC
Q psy2071 70 FMTLLAQNQCIVLVGETGSGKTTQIPQWCV-EYSKSVG-AKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRFED 147 (302)
Q Consensus 70 i~~~i~~g~i~~liG~nGsGKSTll~~i~g-~~~~~~G-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 147 (302)
+...+..+..+.+.+|+|||||+..-..+. ......| .+.+. .|.+.-+......+....... .+........
T Consensus 37 i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~lil--~P~~~L~~q~~~~~~~~~~~~---~~~v~~~~~~ 111 (367)
T 1hv8_A 37 IPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNENNGIEAIIL--TPTRELAIQVADEIESLKGNK---NLKIAKIYGG 111 (367)
T ss_dssp HHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEE--CSCHHHHHHHHHHHHHHHCSS---CCCEEEECTT
T ss_pred HHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhcccCCCcEEEE--cCCHHHHHHHHHHHHHHhCCC---CceEEEEECC
Confidence 333344447889999999999986433222 1222223 33332 233322222223222221110 1111111111
Q ss_pred CC-------CccccccccCHHHHHHHhccc-cCCCCCcEEEEcCCCCCCcchHHHHHHHHHHHHHc-CCCcEEEEEEecC
Q psy2071 148 CS-------SPKTVLKYMTDGMLLREGMSD-PMLENYQVILLDEAHERTLATDILMGVLKEVIKQR-ADLKLVIMSATLD 218 (302)
Q Consensus 148 ~~-------~~~~~~~~lS~G~~qr~~la~-al~~~p~lliLDE~~~p~~~lD~~~~~l~~ll~~~-~~~~~~ii~~thd 218 (302)
.. .....+-..|.+...+..... ..+.+.+++|+||+|.-... . ....+..++... ....++++++|..
T Consensus 112 ~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~~-~-~~~~~~~~~~~~~~~~~~i~~SAT~~ 189 (367)
T 1hv8_A 112 KAIYPQIKALKNANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEMLNM-G-FIKDVEKILNACNKDKRILLFSATMP 189 (367)
T ss_dssp SCHHHHHHHHHTCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETHHHHHTT-T-THHHHHHHHHTSCSSCEEEEECSSCC
T ss_pred cchHHHHhhcCCCCEEEecHHHHHHHHHcCCcccccCCEEEEeCchHhhhh-c-hHHHHHHHHHhCCCCceEEEEeeccC
Confidence 10 012234456777665544332 33678899999998752110 1 123344454443 3446788888886
Q ss_pred HHH---HHhhccCCCeee
Q psy2071 219 AGK---FQQYFDNAPLMN 233 (302)
Q Consensus 219 ~~~---~~~~~d~~~~l~ 233 (302)
.+. +..+.....++.
T Consensus 190 ~~~~~~~~~~~~~~~~~~ 207 (367)
T 1hv8_A 190 REILNLAKKYMGDYSFIK 207 (367)
T ss_dssp HHHHHHHHHHCCSEEEEE
T ss_pred HHHHHHHHHHcCCCeEEE
Confidence 543 344444433333
No 251
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.60 E-value=1.1e-05 Score=67.62 Aligned_cols=40 Identities=20% Similarity=0.121 Sum_probs=34.2
Q ss_pred HHHHhCCEEEEEccCCCCccchhhhhhhcccccCC--CEEEe
Q psy2071 72 TLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVG--AKAVA 111 (302)
Q Consensus 72 ~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G--~~~i~ 111 (302)
..+.+|.+++|+|++||||||+.+.|...+.|..| .+.+.
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~ 61 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLD 61 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEC
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEEC
Confidence 56789999999999999999999999998887777 44454
No 252
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.59 E-value=1.2e-05 Score=67.07 Aligned_cols=31 Identities=26% Similarity=0.162 Sum_probs=27.3
Q ss_pred HHHHHhCCEEEEEccCCCCccchhhhhhhcc
Q psy2071 71 MTLLAQNQCIVLVGETGSGKTTQIPQWCVEY 101 (302)
Q Consensus 71 ~~~i~~g~i~~liG~nGsGKSTll~~i~g~~ 101 (302)
...+.+|.+++|+|++||||||+.+.|++.+
T Consensus 15 ~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 15 VPRGSKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCCSCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred cccCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 3456789999999999999999999998865
No 253
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.59 E-value=7e-05 Score=61.61 Aligned_cols=24 Identities=29% Similarity=0.401 Sum_probs=19.9
Q ss_pred hCCEEEEEccCCCCccchhhhhhh
Q psy2071 76 QNQCIVLVGETGSGKTTQIPQWCV 99 (302)
Q Consensus 76 ~g~i~~liG~nGsGKSTll~~i~g 99 (302)
+|.++.+.|+.||||||++-.++.
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~ 25 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVE 25 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred ccEEEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999754443
No 254
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=97.59 E-value=0.00017 Score=68.64 Aligned_cols=144 Identities=17% Similarity=0.164 Sum_probs=67.3
Q ss_pred HHHHhC--CEEEEEccCCCCccch--hhhhhhccccc-CCCEEEeecCchhhhHHHHHHHhhhhhcc-ccccceeeeeee
Q psy2071 72 TLLAQN--QCIVLVGETGSGKTTQ--IPQWCVEYSKS-VGAKAVACTQPRRVAAMSVAQRVSEEMDC-QLGQEVGYSIRF 145 (302)
Q Consensus 72 ~~i~~g--~i~~liG~nGsGKSTl--l~~i~g~~~~~-~G~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~ 145 (302)
..+..| +.+.|.+|+|||||.. +.++..+.... .+.+.+. .|.+.-+......+...... ......++.-..
T Consensus 151 ~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~~~~~~vLvl--~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~ 228 (508)
T 3fho_A 151 PLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICL--APSRELARQIMDVVTEMGKYTEVKTAFGIKDSV 228 (508)
T ss_dssp HHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTTCCSCCEEEE--CSCHHHHHHHHHHHHHHSTTSSCCEEC------
T ss_pred HHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhCCCCceEEEE--ECcHHHHHHHHHHHHHhCCccCeeEEEEeCCcc
Confidence 344555 8899999999999984 33333222222 2244433 23332222222222221110 111111111111
Q ss_pred cCCCCccccccccCHHHHHHHhcccc-CCCCCcEEEEcCCCCCCcchHHHHHHHHHHHHHcC-CCcEEEEEEecC
Q psy2071 146 EDCSSPKTVLKYMTDGMLLREGMSDP-MLENYQVILLDEAHERTLATDILMGVLKEVIKQRA-DLKLVIMSATLD 218 (302)
Q Consensus 146 ~~~~~~~~~~~~lS~G~~qr~~la~a-l~~~p~lliLDE~~~p~~~lD~~~~~l~~ll~~~~-~~~~~ii~~thd 218 (302)
.........+-..|.+.......... -+.+.++||+||+|.-..... ....+..+..... ...++.+++|-.
T Consensus 229 ~~~~~~~~~Ivv~T~~~l~~~l~~~~~~~~~~~lIIiDEaH~~~~~~~-~~~~~~~i~~~~~~~~~~i~lSAT~~ 302 (508)
T 3fho_A 229 PKGAKIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNMLDQQG-LGDQSMRIKHLLPRNTQIVLFSATFS 302 (508)
T ss_dssp ----CCCCSEEEECHHHHHHHHHTTCSCCTTCCEEEECCHHHHTTC---CHHHHHHHHHHSCTTCEEEEEESCCS
T ss_pred cccccCCCCEEEECHHHHHHHHHcCCccccCCCEEEEechhhhcccCC-cHHHHHHHHHhCCcCCeEEEEeCCCC
Confidence 11111123455567777665444333 367899999999885433111 1123333443333 345788888876
No 255
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.59 E-value=5.4e-06 Score=75.55 Aligned_cols=29 Identities=24% Similarity=0.361 Sum_probs=24.4
Q ss_pred EEEEEccCCCCccchhhhhhh--cccccCCC
Q psy2071 79 CIVLVGETGSGKTTQIPQWCV--EYSKSVGA 107 (302)
Q Consensus 79 i~~liG~nGsGKSTll~~i~g--~~~~~~G~ 107 (302)
.++|+|++|||||||++.++| .++...|.
T Consensus 36 ~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~ 66 (360)
T 3t34_A 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGI 66 (360)
T ss_dssp EEEEECBTTSSHHHHHHHHHTSCCSCCCSSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCCcCCCCCCc
Confidence 799999999999999999999 44555553
No 256
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.57 E-value=4.6e-05 Score=67.93 Aligned_cols=26 Identities=27% Similarity=0.415 Sum_probs=23.0
Q ss_pred CCEEEEEccCCCCccchhhhhhhccc
Q psy2071 77 NQCIVLVGETGSGKTTQIPQWCVEYS 102 (302)
Q Consensus 77 g~i~~liG~nGsGKSTll~~i~g~~~ 102 (302)
+..+.|.||+|+|||+|+.+|+....
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH
Confidence 68899999999999999999887654
No 257
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=97.57 E-value=0.00097 Score=54.94 Aligned_cols=145 Identities=19% Similarity=0.160 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHhCCEEEEEccCCCCccch--hhhhhhcccc---cCC-CEEEeecCchhhhHHHHHHHhhhhhccccccc
Q psy2071 65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQ--IPQWCVEYSK---SVG-AKAVACTQPRRVAAMSVAQRVSEEMDCQLGQE 138 (302)
Q Consensus 65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTl--l~~i~g~~~~---~~G-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (302)
.+.......+.+|.-+.+.+|+|+|||+. +.++..+... ..| .+.+. .|.+.-+......+......
T Consensus 26 ~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil--~P~~~L~~q~~~~~~~~~~~----- 98 (207)
T 2gxq_A 26 PIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVL--TPTRELALQVASELTAVAPH----- 98 (207)
T ss_dssp HHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEE--CSSHHHHHHHHHHHHHHCTT-----
T ss_pred HHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEE--ECCHHHHHHHHHHHHHHhhc-----
Confidence 34455556677788899999999999984 3333333211 122 33332 23332222222222221110
Q ss_pred eeeeeeecCCCC--------ccccccccCHHHHHHHhcc-ccCCCCCcEEEEcCCCCCCcchHH-HHHHHHHHHHHcC-C
Q psy2071 139 VGYSIRFEDCSS--------PKTVLKYMTDGMLLREGMS-DPMLENYQVILLDEAHERTLATDI-LMGVLKEVIKQRA-D 207 (302)
Q Consensus 139 v~~~~~~~~~~~--------~~~~~~~lS~G~~qr~~la-~al~~~p~lliLDE~~~p~~~lD~-~~~~l~~ll~~~~-~ 207 (302)
+........... ....+-..|.|......-. ...+.+.+++|+||+|.- .|. ....+..++.... .
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~---~~~~~~~~~~~i~~~~~~~ 175 (207)
T 2gxq_A 99 LKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEM---LSMGFEEEVEALLSATPPS 175 (207)
T ss_dssp SCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEESHHHH---HHTTCHHHHHHHHHTSCTT
T ss_pred ceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcCCcchhhceEEEEEChhHh---hccchHHHHHHHHHhCCcc
Confidence 111111111110 1122334555655443222 233678899999998741 121 1134445554443 3
Q ss_pred CcEEEEEEecCH
Q psy2071 208 LKLVIMSATLDA 219 (302)
Q Consensus 208 ~~~~ii~~thd~ 219 (302)
..++++++|...
T Consensus 176 ~~~i~~SAT~~~ 187 (207)
T 2gxq_A 176 RQTLLFSATLPS 187 (207)
T ss_dssp SEEEEECSSCCH
T ss_pred CeEEEEEEecCH
Confidence 457888888764
No 258
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.56 E-value=0.00022 Score=55.83 Aligned_cols=34 Identities=21% Similarity=0.194 Sum_probs=26.2
Q ss_pred HHHHHHHHHhCCEEEEEccCCCCccchhhhhhhc
Q psy2071 67 RTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVE 100 (302)
Q Consensus 67 ~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~ 100 (302)
.+.+......+.-+.|.||+|+|||++.+.+...
T Consensus 17 ~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 17 NREVEAAAKRTSPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp HHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCT
T ss_pred HHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHh
Confidence 3444444566778999999999999999888654
No 259
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=97.56 E-value=0.00034 Score=57.97 Aligned_cols=32 Identities=25% Similarity=0.234 Sum_probs=23.1
Q ss_pred HHHHHHHHHhCCEEEEEccCCCCccchhhhhh
Q psy2071 67 RTEFMTLLAQNQCIVLVGETGSGKTTQIPQWC 98 (302)
Q Consensus 67 ~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~ 98 (302)
.......+..|..+.|.+|+|+|||+..-.++
T Consensus 38 Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~ 69 (216)
T 3b6e_A 38 QMEVAQPALEGKNIIICLPTGSGKTRVAVYIA 69 (216)
T ss_dssp HHHHHHHHHTTCCEEEECSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHH
Confidence 33444455567889999999999998764443
No 260
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.55 E-value=0.00015 Score=62.42 Aligned_cols=24 Identities=29% Similarity=0.411 Sum_probs=21.4
Q ss_pred CEEEEEccCCCCccchhhhhhhcc
Q psy2071 78 QCIVLVGETGSGKTTQIPQWCVEY 101 (302)
Q Consensus 78 ~i~~liG~nGsGKSTll~~i~g~~ 101 (302)
.-+.|.||+||||||+.+.+++..
T Consensus 46 ~~vll~G~~GtGKT~la~~la~~~ 69 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAGEA 69 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHHc
Confidence 348999999999999999998865
No 261
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=97.54 E-value=0.00054 Score=57.35 Aligned_cols=171 Identities=15% Similarity=0.147 Sum_probs=79.6
Q ss_pred CCCCChhhHHHHHhhcCCChhHHHHHHHHHHHhCCEEEEEccCCCCccch--hhhhhhcccccCC-CEEEeecCchhhhH
Q psy2071 44 GYPYTPRYHELHRKRITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQ--IPQWCVEYSKSVG-AKAVACTQPRRVAA 120 (302)
Q Consensus 44 ~~~~~~~~~~l~~~r~~lp~~~~~~~i~~~i~~g~i~~liG~nGsGKSTl--l~~i~g~~~~~~G-~~~i~~~~~~~~~~ 120 (302)
..+..+...+......-...+.+.......+.+|+-+.+.+|+|||||.. ++++..+.....| .+.+.. |.+.-+
T Consensus 8 ~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~--Pt~~L~ 85 (219)
T 1q0u_A 8 RFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITA--PTRELA 85 (219)
T ss_dssp GSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEEC--SSHHHH
T ss_pred hCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhCcCCceEEEEc--CcHHHH
Confidence 33444444544433321222344555566677888899999999999984 4444333221222 343332 333222
Q ss_pred HHHHHHhhhhhccc---cccceeeeeeec----C--CCCccccccccCHHHHHHHhccc-cCCCCCcEEEEcCCCCCCcc
Q psy2071 121 MSVAQRVSEEMDCQ---LGQEVGYSIRFE----D--CSSPKTVLKYMTDGMLLREGMSD-PMLENYQVILLDEAHERTLA 190 (302)
Q Consensus 121 ~~~~~~~~~~~~~~---~~~~v~~~~~~~----~--~~~~~~~~~~lS~G~~qr~~la~-al~~~p~lliLDE~~~p~~~ 190 (302)
......+....... ....+....... . .......+-..|.|......-.. ..+.+.+++|+||+|.-
T Consensus 86 ~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~--- 162 (219)
T 1q0u_A 86 TQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVDEADLM--- 162 (219)
T ss_dssp HHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEECSHHHH---
T ss_pred HHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcCCCCcCcceEEEEcCchHH---
Confidence 22222221111100 011111110000 0 00011234446667665543222 23567899999997641
Q ss_pred hHH-HHHHHHHHHHHcC-CCcEEEEEEecCH
Q psy2071 191 TDI-LMGVLKEVIKQRA-DLKLVIMSATLDA 219 (302)
Q Consensus 191 lD~-~~~~l~~ll~~~~-~~~~~ii~~thd~ 219 (302)
.+. ....+..++.... ...+.++++|...
T Consensus 163 ~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~ 193 (219)
T 1q0u_A 163 LDMGFITDVDQIAARMPKDLQMLVFSATIPE 193 (219)
T ss_dssp HHTTCHHHHHHHHHTSCTTCEEEEEESCCCG
T ss_pred hhhChHHHHHHHHHhCCcccEEEEEecCCCH
Confidence 111 1134555555443 3457888888754
No 262
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.51 E-value=0.0001 Score=63.30 Aligned_cols=26 Identities=27% Similarity=0.308 Sum_probs=21.8
Q ss_pred hCCEEEEEccCCCCccchhhhhhhcc
Q psy2071 76 QNQCIVLVGETGSGKTTQIPQWCVEY 101 (302)
Q Consensus 76 ~g~i~~liG~nGsGKSTll~~i~g~~ 101 (302)
....+.|.||+|+||||+.+.++...
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 44568899999999999999987654
No 263
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.50 E-value=0.00011 Score=66.92 Aligned_cols=39 Identities=23% Similarity=0.154 Sum_probs=29.7
Q ss_pred HHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEee
Q psy2071 74 LAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVAC 112 (302)
Q Consensus 74 i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~ 112 (302)
+++|+++.|.|++|||||||..+++.......+.+.+..
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid 98 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 98 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 679999999999999999998888765543334444433
No 264
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.48 E-value=5.2e-05 Score=64.61 Aligned_cols=42 Identities=24% Similarity=0.149 Sum_probs=30.3
Q ss_pred HHHHHHHH---hCCEEEEEccCCCCccchhhhhhhcccccCCCEEE
Q psy2071 68 TEFMTLLA---QNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAV 110 (302)
Q Consensus 68 ~~i~~~i~---~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i 110 (302)
.+.++.+. .|.+++|.|++||||||+++.|...+.+ .+.+..
T Consensus 14 ~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~ 58 (229)
T 4eaq_A 14 GTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIM 58 (229)
T ss_dssp ------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEE
T ss_pred cCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCcee
Confidence 33444454 8999999999999999999999998876 445543
No 265
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=97.45 E-value=0.00055 Score=70.41 Aligned_cols=172 Identities=16% Similarity=0.218 Sum_probs=88.4
Q ss_pred hHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhhccccccceeeee
Q psy2071 64 FEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSI 143 (302)
Q Consensus 64 ~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 143 (302)
+.+.......+..|+.+.+.+|+|||||+..-..+. .....|...+. ..|.+.-+......+..... .++...
T Consensus 88 ~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~-~~l~~g~rvL~-l~PtkaLa~Q~~~~l~~~~~-----~vgllt 160 (1010)
T 2xgj_A 88 DPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIA-QSLKNKQRVIY-TSPIKALSNQKYRELLAEFG-----DVGLMT 160 (1010)
T ss_dssp CHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHH-HHHHTTCEEEE-EESSHHHHHHHHHHHHHHHS-----CEEEEC
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHH-HHhccCCeEEE-ECChHHHHHHHHHHHHHHhC-----CEEEEe
Confidence 445566666788999999999999999986422211 11123433222 23433222223333322222 333321
Q ss_pred eecCCCCccccccccCHHHHHHHhc-cccCCCCCcEEEEcCCCCCCcc-hHHHHHHHHHHHHHc-CCCcEEEEEEec-CH
Q psy2071 144 RFEDCSSPKTVLKYMTDGMLLREGM-SDPMLENYQVILLDEAHERTLA-TDILMGVLKEVIKQR-ADLKLVIMSATL-DA 219 (302)
Q Consensus 144 ~~~~~~~~~~~~~~lS~G~~qr~~l-a~al~~~p~lliLDE~~~p~~~-lD~~~~~l~~ll~~~-~~~~~~ii~~th-d~ 219 (302)
. +.....+..+-.+|.+....... ....+.+.+++|+||+|.-... -.... ..++... ....++.+++|- +.
T Consensus 161 G-d~~~~~~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~l~d~~rg~~~---e~il~~l~~~~~il~LSATi~n~ 236 (1010)
T 2xgj_A 161 G-DITINPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVW---EETIILLPDKVRYVFLSATIPNA 236 (1010)
T ss_dssp S-SCEECTTCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHH---HHHHHHSCTTCEEEEEECCCTTH
T ss_pred C-CCccCCCCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechhhhcccchhHHH---HHHHHhcCCCCeEEEEcCCCCCH
Confidence 1 11111233455677776654332 2345678999999998842111 12222 2223323 345788899997 44
Q ss_pred HHHHhhcc-----CCCeeeecCcCCccceeec
Q psy2071 220 GKFQQYFD-----NAPLMNVPGRTHPVEIFYT 246 (302)
Q Consensus 220 ~~~~~~~d-----~~~~l~i~g~~~~~~~~~~ 246 (302)
..+..+.. .+.++...++..|.+.++.
T Consensus 237 ~e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~ 268 (1010)
T 2xgj_A 237 MEFAEWICKIHSQPCHIVYTNFRPTPLQHYLF 268 (1010)
T ss_dssp HHHHHHHHHHHTSCEEEEEECCCSSCEEEEEE
T ss_pred HHHHHHHHhhcCCCeEEEecCCCcccceEEEE
Confidence 44444433 3444444666666655543
No 266
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.44 E-value=4.1e-05 Score=62.68 Aligned_cols=37 Identities=27% Similarity=0.193 Sum_probs=31.1
Q ss_pred HhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEe
Q psy2071 75 AQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVA 111 (302)
Q Consensus 75 ~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~ 111 (302)
.+|.+++|+|++||||||+.+.++..+.+..+.+.+.
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~ 47 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVL 47 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEe
Confidence 4688999999999999999999999887666666443
No 267
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.42 E-value=9e-05 Score=64.45 Aligned_cols=24 Identities=29% Similarity=0.311 Sum_probs=20.6
Q ss_pred CCEEEEEccCCCCccchhhhhhhc
Q psy2071 77 NQCIVLVGETGSGKTTQIPQWCVE 100 (302)
Q Consensus 77 g~i~~liG~nGsGKSTll~~i~g~ 100 (302)
...+.|.||+|+||||+.+.++..
T Consensus 64 ~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 64 LVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHH
Confidence 346889999999999999998764
No 268
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=97.42 E-value=0.0003 Score=63.63 Aligned_cols=38 Identities=18% Similarity=0.182 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhCC---EEEEEccCCCCccchhhhhhhcccc
Q psy2071 66 YRTEFMTLLAQNQ---CIVLVGETGSGKTTQIPQWCVEYSK 103 (302)
Q Consensus 66 ~~~~i~~~i~~g~---i~~liG~nGsGKSTll~~i~g~~~~ 103 (302)
..+.+...+..|. .+.|.||.|+||||+++.++..+..
T Consensus 24 ~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~~ 64 (373)
T 1jr3_A 24 VLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 (373)
T ss_dssp HHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3455566677776 4899999999999999999876543
No 269
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=97.42 E-value=0.00039 Score=65.04 Aligned_cols=50 Identities=12% Similarity=0.133 Sum_probs=36.7
Q ss_pred hHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCC-CEEEeec
Q psy2071 64 FEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVG-AKAVACT 113 (302)
Q Consensus 64 ~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G-~~~i~~~ 113 (302)
+..++.+.--+.+|+++.|.|++|+||||+.-.++.......| .+.+...
T Consensus 187 ~~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl 237 (444)
T 2q6t_A 187 FKELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL 237 (444)
T ss_dssp CHHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred CHhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 3446666655889999999999999999999888876554334 4544433
No 270
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.40 E-value=3.8e-05 Score=60.95 Aligned_cols=24 Identities=25% Similarity=0.457 Sum_probs=21.0
Q ss_pred CEEEEEccCCCCccchhhhhhhcc
Q psy2071 78 QCIVLVGETGSGKTTQIPQWCVEY 101 (302)
Q Consensus 78 ~i~~liG~nGsGKSTll~~i~g~~ 101 (302)
.+.+|+|||||||||++.+|...+
T Consensus 24 g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 489999999999999999987543
No 271
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=97.38 E-value=0.00033 Score=60.69 Aligned_cols=147 Identities=24% Similarity=0.276 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHhCCEEEEEccCCCCccch--hhhhhhccc----ccCC-CEEEeecCchhhhHHHHHHHhhhhhcccccc
Q psy2071 65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQ--IPQWCVEYS----KSVG-AKAVACTQPRRVAAMSVAQRVSEEMDCQLGQ 137 (302)
Q Consensus 65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTl--l~~i~g~~~----~~~G-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (302)
.+.......+..|+-+.+.+|+|||||.. ++++..+.. +..| .+.+. .|.+.-+..+...+..... ....
T Consensus 79 ~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil--~Pt~~La~q~~~~~~~~~~-~~~~ 155 (262)
T 3ly5_A 79 EIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLIL--SPTRELAMQTFGVLKELMT-HHVH 155 (262)
T ss_dssp HHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEE--CSSHHHHHHHHHHHHHHTT-TCCS
T ss_pred HHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEEEE--eCCHHHHHHHHHHHHHHHh-hcCc
Confidence 34555556667788899999999999974 444332221 1123 33332 2333222222222222111 1111
Q ss_pred ceeeeeeecCCCC--------ccccccccCHHHHHHHhccc--cCCCCCcEEEEcCCCCCCcchHH-HHHHHHHHHHHcC
Q psy2071 138 EVGYSIRFEDCSS--------PKTVLKYMTDGMLLREGMSD--PMLENYQVILLDEAHERTLATDI-LMGVLKEVIKQRA 206 (302)
Q Consensus 138 ~v~~~~~~~~~~~--------~~~~~~~lS~G~~qr~~la~--al~~~p~lliLDE~~~p~~~lD~-~~~~l~~ll~~~~ 206 (302)
.++... ..... ....+-..+.|......... ..+.+.+++|+||+|. -+|. ....+..++....
T Consensus 156 ~~~~~~--g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDEah~---l~~~~~~~~l~~i~~~~~ 230 (262)
T 3ly5_A 156 TYGLIM--GGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADR---ILDVGFEEELKQIIKLLP 230 (262)
T ss_dssp CEEEEC--SSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEECSHHH---HHHTTCHHHHHHHHHHSC
T ss_pred eEEEEE--CCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccCCcccccCCEEEEcChHH---HhhhhHHHHHHHHHHhCC
Confidence 111111 11100 01224446666665443322 2467889999999763 1221 1134555555543
Q ss_pred -CCcEEEEEEecCH
Q psy2071 207 -DLKLVIMSATLDA 219 (302)
Q Consensus 207 -~~~~~ii~~thd~ 219 (302)
...+.+++||...
T Consensus 231 ~~~q~l~~SAT~~~ 244 (262)
T 3ly5_A 231 TRRQTMLFSATQTR 244 (262)
T ss_dssp SSSEEEEECSSCCH
T ss_pred CCCeEEEEEecCCH
Confidence 3457778888764
No 272
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=97.36 E-value=0.00024 Score=58.77 Aligned_cols=26 Identities=23% Similarity=0.252 Sum_probs=20.9
Q ss_pred HhCCEEEEEccCCCCccchhhhhhhc
Q psy2071 75 AQNQCIVLVGETGSGKTTQIPQWCVE 100 (302)
Q Consensus 75 ~~g~i~~liG~nGsGKSTll~~i~g~ 100 (302)
.+|.++.+.|+.||||||.+-.++--
T Consensus 6 ~~g~i~v~~G~mgsGKTT~ll~~a~r 31 (191)
T 1xx6_A 6 DHGWVEVIVGPMYSGKSEELIRRIRR 31 (191)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHH
Confidence 46889999999999999987555443
No 273
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=97.36 E-value=0.0014 Score=64.38 Aligned_cols=148 Identities=13% Similarity=0.118 Sum_probs=73.5
Q ss_pred HHHHHHHHHhCCEEEEEccCCCCccchhhhhhh--ccc-cc--CCCEEEeecCchhhhHHHHHHHhhhhhccccccceee
Q psy2071 67 RTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCV--EYS-KS--VGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGY 141 (302)
Q Consensus 67 ~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g--~~~-~~--~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 141 (302)
...+...+-.|.-+.+.+|+|||||+..-+.+. +.. +. .|.+.+.. |.+.-+......+..... ..+-.++.
T Consensus 18 Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~--Pt~~L~~Q~~~~~~~~~~-~~~~~v~~ 94 (696)
T 2ykg_A 18 QLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFA--NQIPVYEQNKSVFSKYFE-RHGYRVTG 94 (696)
T ss_dssp HHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEEC--SSHHHHHHHHHHHHHHTT-TTTCCEEE
T ss_pred HHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEE--CCHHHHHHHHHHHHHHhc-cCCceEEE
Confidence 444455566788899999999999996433322 111 11 14443332 222111111111111110 00111211
Q ss_pred eeeecCCC------CccccccccCHHHHHHHhccccC--CCCCcEEEEcCCCCCCcchHHHHHHHHHHHHH------cCC
Q psy2071 142 SIRFEDCS------SPKTVLKYMTDGMLLREGMSDPM--LENYQVILLDEAHERTLATDILMGVLKEVIKQ------RAD 207 (302)
Q Consensus 142 ~~~~~~~~------~~~~~~~~lS~G~~qr~~la~al--~~~p~lliLDE~~~p~~~lD~~~~~l~~ll~~------~~~ 207 (302)
........ .....+-..|.|...+......+ +.+.++||+||+|.-...- ....++..++.. ...
T Consensus 95 ~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~-~~~~i~~~~l~~~~~~~~~~~ 173 (696)
T 2ykg_A 95 ISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQH-PYNMIMFNYLDQKLGGSSGPL 173 (696)
T ss_dssp ECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTC-HHHHHHHHHHHHHHTTCCSCC
T ss_pred EeCCccccccHHHhccCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCcc-cHHHHHHHHHHHhhcccCCCC
Confidence 11100000 01234556888888776554433 6788999999999755332 222333333332 133
Q ss_pred CcEEEEEEecC
Q psy2071 208 LKLVIMSATLD 218 (302)
Q Consensus 208 ~~~~ii~~thd 218 (302)
..++.+++|..
T Consensus 174 ~~il~LTATp~ 184 (696)
T 2ykg_A 174 PQVIGLTASVG 184 (696)
T ss_dssp CEEEEEESCCC
T ss_pred CeEEEEeCccc
Confidence 46888999986
No 274
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=97.35 E-value=0.00025 Score=66.10 Aligned_cols=43 Identities=35% Similarity=0.332 Sum_probs=34.2
Q ss_pred CEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhH
Q psy2071 78 QCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAA 120 (302)
Q Consensus 78 ~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~ 120 (302)
.+++++|++|+||||+...|++.+......+.+...++.+.+.
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a 142 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAA 142 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTG
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchH
Confidence 4899999999999999999998876554577777777665444
No 275
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.34 E-value=4.6e-05 Score=63.48 Aligned_cols=29 Identities=31% Similarity=0.438 Sum_probs=25.2
Q ss_pred HHHhCCEEEEEccCCCCccchhhhhhhcc
Q psy2071 73 LLAQNQCIVLVGETGSGKTTQIPQWCVEY 101 (302)
Q Consensus 73 ~i~~g~i~~liG~nGsGKSTll~~i~g~~ 101 (302)
...+|.+++|+||+||||||+.+.|+..+
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 45688999999999999999999998765
No 276
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.30 E-value=5.9e-05 Score=62.57 Aligned_cols=21 Identities=33% Similarity=0.412 Sum_probs=20.0
Q ss_pred EEEEEccCCCCccchhhhhhh
Q psy2071 79 CIVLVGETGSGKTTQIPQWCV 99 (302)
Q Consensus 79 i~~liG~nGsGKSTll~~i~g 99 (302)
+++|+|+|||||||+.+.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999988
No 277
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=97.30 E-value=0.0036 Score=53.27 Aligned_cols=127 Identities=17% Similarity=0.133 Sum_probs=59.7
Q ss_pred HHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhhccccccc-eeeeeeecCCC
Q psy2071 71 MTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQE-VGYSIRFEDCS 149 (302)
Q Consensus 71 ~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~ 149 (302)
...+..+.-+.|.||+|+|||.+.-.++... .+.+.+.. |.+.-.......+.. ++ .. ++.. ....
T Consensus 102 i~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~---~~~~liv~--P~~~L~~q~~~~~~~-~~----~~~v~~~---~g~~ 168 (237)
T 2fz4_A 102 LERWLVDKRGCIVLPTGSGKTHVAMAAINEL---STPTLIVV--PTLALAEQWKERLGI-FG----EEYVGEF---SGRI 168 (237)
T ss_dssp HHHHTTTSEEEEEESSSTTHHHHHHHHHHHS---CSCEEEEE--SSHHHHHHHHHHHGG-GC----GGGEEEE---SSSC
T ss_pred HHHHHhCCCEEEEeCCCCCHHHHHHHHHHHc---CCCEEEEe--CCHHHHHHHHHHHHh-CC----CCeEEEE---eCCC
Confidence 3345556668999999999999864443322 33444433 221111111112111 11 11 2211 1111
Q ss_pred CccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEEEecC
Q psy2071 150 SPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILMGVLKEVIKQRADLKLVIMSATLD 218 (302)
Q Consensus 150 ~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~~~l~~ll~~~~~~~~~ii~~thd 218 (302)
.....+...+.+...+.. ..+..+.++||+||+|.-... . ...++.......+..+++|..
T Consensus 169 ~~~~~i~v~T~~~l~~~~--~~~~~~~~llIiDEaH~l~~~---~---~~~i~~~~~~~~~l~LSATp~ 229 (237)
T 2fz4_A 169 KELKPLTVSTYDSAYVNA--EKLGNRFMLLIFDEVHHLPAE---S---YVQIAQMSIAPFRLGLTATFE 229 (237)
T ss_dssp BCCCSEEEEEHHHHHHTH--HHHTTTCSEEEEECSSCCCTT---T---HHHHHHTCCCSEEEEEEESCC
T ss_pred CCcCCEEEEeHHHHHhhH--HHhcccCCEEEEECCccCCCh---H---HHHHHHhccCCEEEEEecCCC
Confidence 112222333333333211 223457999999998864332 1 223333334445677788864
No 278
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.28 E-value=0.0012 Score=60.21 Aligned_cols=42 Identities=19% Similarity=0.170 Sum_probs=30.6
Q ss_pred HHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecC
Q psy2071 73 LLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQ 114 (302)
Q Consensus 73 ~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~ 114 (302)
-+..|+++.|.|++|+|||||.-+++.......+.+.+....
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E 111 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAE 111 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECC
Confidence 366999999999999999999877765443333455554443
No 279
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.27 E-value=0.00042 Score=62.92 Aligned_cols=26 Identities=27% Similarity=0.280 Sum_probs=22.3
Q ss_pred hCCEEEEEccCCCCccchhhhhhhcc
Q psy2071 76 QNQCIVLVGETGSGKTTQIPQWCVEY 101 (302)
Q Consensus 76 ~g~i~~liG~nGsGKSTll~~i~g~~ 101 (302)
....+.|.||+|+||||+.+.++...
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHc
Confidence 35679999999999999999997654
No 280
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=97.25 E-value=0.00025 Score=66.49 Aligned_cols=34 Identities=21% Similarity=0.237 Sum_probs=28.5
Q ss_pred HHHHHHHHhCCE--EEEEccCCCCccchhhhhhhcc
Q psy2071 68 TEFMTLLAQNQC--IVLVGETGSGKTTQIPQWCVEY 101 (302)
Q Consensus 68 ~~i~~~i~~g~i--~~liG~nGsGKSTll~~i~g~~ 101 (302)
..+...+..|.+ +.|.||+|+||||+.+.|+...
T Consensus 39 ~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~ 74 (447)
T 3pvs_A 39 KPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYA 74 (447)
T ss_dssp SHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHh
Confidence 455667788876 8999999999999999998765
No 281
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=97.23 E-value=0.0026 Score=57.88 Aligned_cols=171 Identities=15% Similarity=0.131 Sum_probs=81.4
Q ss_pred CCCCCCChhhHHHHHhhcCCC-hhHHHHHHHHHHHhCCEEEEEccCCCCccch--hhhhhhcccccCC-CEEEeecCchh
Q psy2071 42 FTGYPYTPRYHELHRKRITLP-VFEYRTEFMTLLAQNQCIVLVGETGSGKTTQ--IPQWCVEYSKSVG-AKAVACTQPRR 117 (302)
Q Consensus 42 ~~~~~~~~~~~~l~~~r~~lp-~~~~~~~i~~~i~~g~i~~liG~nGsGKSTl--l~~i~g~~~~~~G-~~~i~~~~~~~ 117 (302)
|......+...+-.... .+. -+.+.......+..|.-+.+.+|+|||||+. ++++..+.....| .+.+.. |.+
T Consensus 23 f~~~~l~~~l~~~l~~~-g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~--P~~ 99 (400)
T 1s2m_A 23 FEDFYLKRELLMGIFEA-GFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMV--PTR 99 (400)
T ss_dssp GGGGCCCHHHHHHHHHT-TCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEEC--SSH
T ss_pred hhhcCCCHHHHHHHHHC-CCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhccCCccEEEEc--CCH
Confidence 44444455554433322 121 2334455556666788899999999999974 3333322221123 344432 333
Q ss_pred hhHHHHHHHhhhhhccccccceeeeeeecCCC--------CccccccccCHHHHHHHhcc-ccCCCCCcEEEEcCCCCCC
Q psy2071 118 VAAMSVAQRVSEEMDCQLGQEVGYSIRFEDCS--------SPKTVLKYMTDGMLLREGMS-DPMLENYQVILLDEAHERT 188 (302)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--------~~~~~~~~lS~G~~qr~~la-~al~~~p~lliLDE~~~p~ 188 (302)
.-+......+.... ...+..+.... .... .....+-..|.|........ ...+.+.+++|+||+|.-.
T Consensus 100 ~L~~q~~~~~~~~~-~~~~~~~~~~~--g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~ 176 (400)
T 1s2m_A 100 ELALQTSQVVRTLG-KHCGISCMVTT--GGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKML 176 (400)
T ss_dssp HHHHHHHHHHHHHT-TTTTCCEEEEC--SSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEESHHHHS
T ss_pred HHHHHHHHHHHHHh-cccCceEEEEe--CCcchHHHHHHhcCCCCEEEEchHHHHHHHHhCCcccccCCEEEEeCchHhh
Confidence 22222222222111 11111111111 1100 11223445677766554332 2346788999999987421
Q ss_pred cchHHHHHHHHHHHHHcC-CCcEEEEEEecCHH
Q psy2071 189 LATDILMGVLKEVIKQRA-DLKLVIMSATLDAG 220 (302)
Q Consensus 189 ~~lD~~~~~l~~ll~~~~-~~~~~ii~~thd~~ 220 (302)
. . .....+..++.... ....+++++|....
T Consensus 177 ~-~-~~~~~~~~i~~~~~~~~~~i~lSAT~~~~ 207 (400)
T 1s2m_A 177 S-R-DFKTIIEQILSFLPPTHQSLLFSATFPLT 207 (400)
T ss_dssp S-H-HHHHHHHHHHTTSCSSCEEEEEESCCCHH
T ss_pred h-h-chHHHHHHHHHhCCcCceEEEEEecCCHH
Confidence 1 1 11244455544433 34678889997654
No 282
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.23 E-value=9.3e-05 Score=66.96 Aligned_cols=37 Identities=27% Similarity=0.390 Sum_probs=32.3
Q ss_pred HHHHHHHHHHhCCE--EEEEccCCCCccchhhhhhhccc
Q psy2071 66 YRTEFMTLLAQNQC--IVLVGETGSGKTTQIPQWCVEYS 102 (302)
Q Consensus 66 ~~~~i~~~i~~g~i--~~liG~nGsGKSTll~~i~g~~~ 102 (302)
+++.+...+++|++ ++|+|++||||||+.++|++.+.
T Consensus 11 il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 11 VLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp HHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 56777888899998 99999999999999999987653
No 283
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.22 E-value=8.5e-05 Score=66.35 Aligned_cols=27 Identities=19% Similarity=0.222 Sum_probs=23.4
Q ss_pred HHHhCCEEEEEccCCCCccchhhhhhh
Q psy2071 73 LLAQNQCIVLVGETGSGKTTQIPQWCV 99 (302)
Q Consensus 73 ~i~~g~i~~liG~nGsGKSTll~~i~g 99 (302)
-+.+|.++.|.||.|||||||..+++.
T Consensus 119 Gi~~gsviLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 119 HRYASGMVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp EEEESEEEEEECSCSSSHHHHHHHHHH
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 366788899999999999999988764
No 284
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=97.21 E-value=0.00023 Score=70.06 Aligned_cols=46 Identities=26% Similarity=0.295 Sum_probs=27.9
Q ss_pred hCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHh
Q psy2071 76 QNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRV 127 (302)
Q Consensus 76 ~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~ 127 (302)
+|+.+.+.||+|||||+. ++..+.....| +.+ .|.+.-+..+..++
T Consensus 154 ~rk~vlv~apTGSGKT~~--al~~l~~~~~g-l~l---~PtR~LA~Qi~~~l 199 (677)
T 3rc3_A 154 QRKIIFHSGPTNSGKTYH--AIQKYFSAKSG-VYC---GPLKLLAHEIFEKS 199 (677)
T ss_dssp CCEEEEEECCTTSSHHHH--HHHHHHHSSSE-EEE---ESSHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHH--HHHHHHhcCCe-EEE---eCHHHHHHHHHHHH
Confidence 678999999999999994 33333332223 222 45555555555444
No 285
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=97.21 E-value=0.0009 Score=56.16 Aligned_cols=25 Identities=20% Similarity=0.199 Sum_probs=20.4
Q ss_pred HhCCEEEEEccCCCCccchhhhhhh
Q psy2071 75 AQNQCIVLVGETGSGKTTQIPQWCV 99 (302)
Q Consensus 75 ~~g~i~~liG~nGsGKSTll~~i~g 99 (302)
.+|.+..+.|+-||||||.+-.++-
T Consensus 26 ~~G~l~vitG~MgsGKTT~lL~~a~ 50 (214)
T 2j9r_A 26 QNGWIEVICGSMFSGKSEELIRRVR 50 (214)
T ss_dssp CSCEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHH
Confidence 4688999999999999998655443
No 286
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.20 E-value=8.5e-05 Score=59.91 Aligned_cols=26 Identities=15% Similarity=0.295 Sum_probs=22.8
Q ss_pred hCCEEEEEccCCCCccchhhhhhhcc
Q psy2071 76 QNQCIVLVGETGSGKTTQIPQWCVEY 101 (302)
Q Consensus 76 ~g~i~~liG~nGsGKSTll~~i~g~~ 101 (302)
+|..++|+|++|+|||||++.+++..
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 56789999999999999999998854
No 287
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.18 E-value=0.00011 Score=60.85 Aligned_cols=33 Identities=24% Similarity=0.294 Sum_probs=26.1
Q ss_pred CCEEEEEccCCCCccchhhhhhhcccccCCCEEEeec
Q psy2071 77 NQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACT 113 (302)
Q Consensus 77 g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~ 113 (302)
..+++|+|++||||||+.+.|+..+ |...+.+.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l----g~~~i~~d 50 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC----GYPFIEGD 50 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH----TCCEEEGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh----CCEEEeCC
Confidence 4589999999999999999998765 44555443
No 288
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.16 E-value=0.00017 Score=58.75 Aligned_cols=28 Identities=18% Similarity=0.229 Sum_probs=24.2
Q ss_pred CCEEEEEccCCCCccchhhhhhhccccc
Q psy2071 77 NQCIVLVGETGSGKTTQIPQWCVEYSKS 104 (302)
Q Consensus 77 g~i~~liG~nGsGKSTll~~i~g~~~~~ 104 (302)
-.+++|+|++|||||||++.+++.+.+.
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~ 33 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCAR 33 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcccc
Confidence 3589999999999999999999876543
No 289
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=97.16 E-value=0.0057 Score=51.90 Aligned_cols=184 Identities=18% Similarity=0.165 Sum_probs=83.9
Q ss_pred CCCCCCChhhHHHHHhhcCCChhHHHHHHHHHHHhCCEEEEEccCCCCccch--hhhhhhcccc-----cCC-CEEEeec
Q psy2071 42 FTGYPYTPRYHELHRKRITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQ--IPQWCVEYSK-----SVG-AKAVACT 113 (302)
Q Consensus 42 ~~~~~~~~~~~~l~~~r~~lp~~~~~~~i~~~i~~g~i~~liG~nGsGKSTl--l~~i~g~~~~-----~~G-~~~i~~~ 113 (302)
|..........+......--..+.+.......+..|+-+.+.+|+|||||.. ++++..+... ..| .+.+..
T Consensus 31 f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil~- 109 (242)
T 3fe2_A 31 FYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLA- 109 (242)
T ss_dssp TTTTTCCHHHHHHHHTTTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEEC-
T ss_pred HhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCEEEEEe-
Confidence 4444555555444333211112334555556677888999999999999974 4444333211 122 333322
Q ss_pred CchhhhHHHHHHHhhhhhccccccceeeeeeecCCCC--------ccccccccCHHHHHHHhc-cccCCCCCcEEEEcCC
Q psy2071 114 QPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRFEDCSS--------PKTVLKYMTDGMLLREGM-SDPMLENYQVILLDEA 184 (302)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--------~~~~~~~lS~G~~qr~~l-a~al~~~p~lliLDE~ 184 (302)
|.+.-+..+...+.... ...+-.+... ...... ....+-..+.|......- ....+.+.+++|+||+
T Consensus 110 -Pt~~L~~Q~~~~~~~~~-~~~~~~~~~~--~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEa 185 (242)
T 3fe2_A 110 -PTRELAQQVQQVAAEYC-RACRLKSTCI--YGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEA 185 (242)
T ss_dssp -SSHHHHHHHHHHHHHHH-HHTTCCEEEE--CTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHHTSCCCTTCCEEEETTH
T ss_pred -CcHHHHHHHHHHHHHHH-hhcCceEEEE--ECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCCcccccEEEEeCH
Confidence 32222222222111110 0001111111 111100 011233456665544332 2234678899999997
Q ss_pred CCCCcchHH-HHHHHHHHHHHcC-CCcEEEEEEecCHH---HHHhhccCCCeee
Q psy2071 185 HERTLATDI-LMGVLKEVIKQRA-DLKLVIMSATLDAG---KFQQYFDNAPLMN 233 (302)
Q Consensus 185 ~~p~~~lD~-~~~~l~~ll~~~~-~~~~~ii~~thd~~---~~~~~~d~~~~l~ 233 (302)
|. -+|. ....+..++.... +..+.++++|..-+ .+..+......+.
T Consensus 186 h~---l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~l~~~~~i~ 236 (242)
T 3fe2_A 186 DR---MLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHIN 236 (242)
T ss_dssp HH---HHHTTCHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEEE
T ss_pred HH---HhhhCcHHHHHHHHHhCCccceEEEEEeecCHHHHHHHHHHCCCCEEEE
Confidence 63 1121 1134455555443 34577788887543 3344444444444
No 290
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=97.13 E-value=0.00088 Score=56.82 Aligned_cols=26 Identities=35% Similarity=0.578 Sum_probs=23.1
Q ss_pred HHhCCEEEEEccCCCCccchhhhhhh
Q psy2071 74 LAQNQCIVLVGETGSGKTTQIPQWCV 99 (302)
Q Consensus 74 i~~g~i~~liG~nGsGKSTll~~i~g 99 (302)
+++|+++.|.|++|+||||+.-+++-
T Consensus 27 l~~G~l~~i~G~pG~GKT~l~l~~~~ 52 (251)
T 2zts_A 27 FPEGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 67999999999999999999877653
No 291
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=97.11 E-value=0.0033 Score=58.38 Aligned_cols=146 Identities=18% Similarity=0.242 Sum_probs=70.3
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccc--hhhhhhhccccc-----CC-CEEEeecCchhhhHHHHHHHhhhhhcccccc
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTT--QIPQWCVEYSKS-----VG-AKAVACTQPRRVAAMSVAQRVSEEMDCQLGQ 137 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKST--ll~~i~g~~~~~-----~G-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (302)
+.......+..|.-+.+.+|+|||||. +++++..+.... .| .+.+. .|.+.-+..+...+..... ...-
T Consensus 82 iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~lil--~PtreLa~Q~~~~~~~~~~-~~~~ 158 (434)
T 2db3_A 82 IQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIV--SPTRELAIQIFNEARKFAF-ESYL 158 (434)
T ss_dssp HHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEEEE--CSSHHHHHHHHHHHHHHTT-TSSC
T ss_pred HHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccEEEE--ecCHHHHHHHHHHHHHHhc-cCCc
Confidence 344445566788899999999999998 345544333211 12 33332 2333222222222211110 0001
Q ss_pred ceeeeeeecCCC--------CccccccccCHHHHHHHhc-cccCCCCCcEEEEcCCCCCCcchHH-HHHHHHHHHHH---
Q psy2071 138 EVGYSIRFEDCS--------SPKTVLKYMTDGMLLREGM-SDPMLENYQVILLDEAHERTLATDI-LMGVLKEVIKQ--- 204 (302)
Q Consensus 138 ~v~~~~~~~~~~--------~~~~~~~~lS~G~~qr~~l-a~al~~~p~lliLDE~~~p~~~lD~-~~~~l~~ll~~--- 204 (302)
.++.. ..... .....+-..|.|......- ....+.+.++||+||+|.- +|. ....+..++..
T Consensus 159 ~~~~~--~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~---~~~gf~~~~~~i~~~~~~ 233 (434)
T 2db3_A 159 KIGIV--YGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFITFEDTRFVVLDEADRM---LDMGFSEDMRRIMTHVTM 233 (434)
T ss_dssp CCCEE--CTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSCCCTTCCEEEEETHHHH---TSTTTHHHHHHHHHCTTS
T ss_pred EEEEE--ECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHhCCcccccCCeEEEccHhhh---hccCcHHHHHHHHHhcCC
Confidence 11111 11110 0112344567776655432 2234678999999997641 111 11334455443
Q ss_pred cCCCcEEEEEEecCH
Q psy2071 205 RADLKLVIMSATLDA 219 (302)
Q Consensus 205 ~~~~~~~ii~~thd~ 219 (302)
.....+.++++|...
T Consensus 234 ~~~~q~l~~SAT~~~ 248 (434)
T 2db3_A 234 RPEHQTLMFSATFPE 248 (434)
T ss_dssp CSSCEEEEEESCCCH
T ss_pred CCCceEEEEeccCCH
Confidence 234467788888754
No 292
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.10 E-value=0.0011 Score=60.00 Aligned_cols=25 Identities=28% Similarity=0.243 Sum_probs=22.2
Q ss_pred CCEEEEEccCCCCccchhhhhhhcc
Q psy2071 77 NQCIVLVGETGSGKTTQIPQWCVEY 101 (302)
Q Consensus 77 g~i~~liG~nGsGKSTll~~i~g~~ 101 (302)
+..+.|.||.|+||||+++.++...
T Consensus 45 ~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHH
Confidence 5679999999999999999998765
No 293
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=97.09 E-value=0.00013 Score=58.18 Aligned_cols=23 Identities=30% Similarity=0.359 Sum_probs=20.8
Q ss_pred EEEEEccCCCCccchhhhhhhcc
Q psy2071 79 CIVLVGETGSGKTTQIPQWCVEY 101 (302)
Q Consensus 79 i~~liG~nGsGKSTll~~i~g~~ 101 (302)
.++|+|++|+|||||++.+++..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998854
No 294
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.09 E-value=0.0014 Score=60.02 Aligned_cols=24 Identities=29% Similarity=0.441 Sum_probs=21.3
Q ss_pred CCEEEEEccCCCCccchhhhhhhc
Q psy2071 77 NQCIVLVGETGSGKTTQIPQWCVE 100 (302)
Q Consensus 77 g~i~~liG~nGsGKSTll~~i~g~ 100 (302)
+..+.|.||+|+||||+.+.++..
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~ 171 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAE 171 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHh
Confidence 568999999999999999998764
No 295
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=97.08 E-value=0.00013 Score=60.87 Aligned_cols=24 Identities=25% Similarity=0.457 Sum_probs=21.1
Q ss_pred CEEEEEccCCCCccchhhhhhhcc
Q psy2071 78 QCIVLVGETGSGKTTQIPQWCVEY 101 (302)
Q Consensus 78 ~i~~liG~nGsGKSTll~~i~g~~ 101 (302)
.+.+|+|||||||||++.+|...+
T Consensus 24 ~~~~I~G~NgsGKStil~ai~~~l 47 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLLDAILVGL 47 (203)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHh
Confidence 589999999999999999986544
No 296
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=97.08 E-value=0.00072 Score=59.77 Aligned_cols=35 Identities=20% Similarity=0.294 Sum_probs=27.0
Q ss_pred HHHHHHHHHhCC--EEEEEccCCCCccchhhhhhhcc
Q psy2071 67 RTEFMTLLAQNQ--CIVLVGETGSGKTTQIPQWCVEY 101 (302)
Q Consensus 67 ~~~i~~~i~~g~--i~~liG~nGsGKSTll~~i~g~~ 101 (302)
.+.+...+..|. .+.|.||.|+||||+.+.++..+
T Consensus 34 ~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l 70 (327)
T 1iqp_A 34 VKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALAREL 70 (327)
T ss_dssp HHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 444555666665 68999999999999999887654
No 297
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=97.08 E-value=0.0013 Score=58.34 Aligned_cols=36 Identities=22% Similarity=0.404 Sum_probs=26.6
Q ss_pred HHHHHHHHHHhCC---EEEEEccCCCCccchhhhhhhcc
Q psy2071 66 YRTEFMTLLAQNQ---CIVLVGETGSGKTTQIPQWCVEY 101 (302)
Q Consensus 66 ~~~~i~~~i~~g~---i~~liG~nGsGKSTll~~i~g~~ 101 (302)
..+.+...+..|. .+.+.||+|+||||+.+.++..+
T Consensus 34 ~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l 72 (324)
T 3u61_B 34 DKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDV 72 (324)
T ss_dssp HHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHh
Confidence 3455666666665 46667779999999999987654
No 298
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.07 E-value=0.00041 Score=61.93 Aligned_cols=34 Identities=29% Similarity=0.378 Sum_probs=27.1
Q ss_pred HHHHH-HHHHhCCEEEEEccCCCCccchhhhhhhc
Q psy2071 67 RTEFM-TLLAQNQCIVLVGETGSGKTTQIPQWCVE 100 (302)
Q Consensus 67 ~~~i~-~~i~~g~i~~liG~nGsGKSTll~~i~g~ 100 (302)
++.+. --+++|+++.|.|++||||||+..+++..
T Consensus 87 LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 87 LDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp HHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred HHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 44443 24678999999999999999999888753
No 299
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=97.07 E-value=0.00013 Score=59.28 Aligned_cols=23 Identities=43% Similarity=0.575 Sum_probs=20.3
Q ss_pred EEEEEccCCCCccchhhhhhhcc
Q psy2071 79 CIVLVGETGSGKTTQIPQWCVEY 101 (302)
Q Consensus 79 i~~liG~nGsGKSTll~~i~g~~ 101 (302)
.++|+|++|||||||++.+++..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~ 26 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTK 26 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999999864
No 300
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.05 E-value=0.00013 Score=59.45 Aligned_cols=26 Identities=31% Similarity=0.547 Sum_probs=22.3
Q ss_pred HhCCEEEEEccCCCCccchhhhhhhc
Q psy2071 75 AQNQCIVLVGETGSGKTTQIPQWCVE 100 (302)
Q Consensus 75 ~~g~i~~liG~nGsGKSTll~~i~g~ 100 (302)
..|.+++|+|++||||||+.+.|+..
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 35789999999999999999998753
No 301
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=97.05 E-value=0.0024 Score=58.39 Aligned_cols=58 Identities=14% Similarity=0.137 Sum_probs=34.2
Q ss_pred CCCCCCChhhHHHHHhhcCCChhHHHHHHHHHHHhCCEEEEEccCCCCccc--hhhhhhh
Q psy2071 42 FTGYPYTPRYHELHRKRITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTT--QIPQWCV 99 (302)
Q Consensus 42 ~~~~~~~~~~~~l~~~r~~lp~~~~~~~i~~~i~~g~i~~liG~nGsGKST--ll~~i~g 99 (302)
|......+...+......--.-..+.......+..|+-+.+.+|+|||||. +++++..
T Consensus 17 f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~ 76 (417)
T 2i4i_A 17 FSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQ 76 (417)
T ss_dssp GGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHH
T ss_pred HhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHH
Confidence 444444555554443321111223345555677788899999999999997 4455433
No 302
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.05 E-value=0.00011 Score=60.18 Aligned_cols=31 Identities=23% Similarity=0.250 Sum_probs=24.6
Q ss_pred HHHHHHhCCEEEEEccCCCCccchhhhhhhc
Q psy2071 70 FMTLLAQNQCIVLVGETGSGKTTQIPQWCVE 100 (302)
Q Consensus 70 i~~~i~~g~i~~liG~nGsGKSTll~~i~g~ 100 (302)
++....++.+++|+|++||||||+.+.++-.
T Consensus 3 ~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 3 GSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ---CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred cCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4455667889999999999999999988754
No 303
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.02 E-value=0.00037 Score=65.08 Aligned_cols=24 Identities=21% Similarity=0.252 Sum_probs=21.8
Q ss_pred EEEEEccCCCCccchhhhhhhccc
Q psy2071 79 CIVLVGETGSGKTTQIPQWCVEYS 102 (302)
Q Consensus 79 i~~liG~nGsGKSTll~~i~g~~~ 102 (302)
.++|+|+||||||||++.++|...
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~~ 205 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKER 205 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTT
T ss_pred eEEEECCCCCCHHHHHHHHhCCcc
Confidence 689999999999999999998753
No 304
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=97.02 E-value=0.0041 Score=59.50 Aligned_cols=65 Identities=20% Similarity=0.285 Sum_probs=35.4
Q ss_pred ccccCHHHHHHHhcc--ccCCCCCcEEEEcCCCC-CCcchHHHHHHHHHHHHHcC-----CCcEEEEEEecCH
Q psy2071 155 LKYMTDGMLLREGMS--DPMLENYQVILLDEAHE-RTLATDILMGVLKEVIKQRA-----DLKLVIMSATLDA 219 (302)
Q Consensus 155 ~~~lS~G~~qr~~la--~al~~~p~lliLDE~~~-p~~~lD~~~~~l~~ll~~~~-----~~~~~ii~~thd~ 219 (302)
+-..|.|......-. ...+.+.++||+||+|. ...+.......+...+.... ...++++++|...
T Consensus 204 Iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~ 276 (563)
T 3i5x_A 204 IVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDD 276 (563)
T ss_dssp EEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCT
T ss_pred EEEECcHHHHHHHHhccccccccceEEEEeCHHHHhccchHHHHHHHHHhhhhccccCccCceEEEEEccCCH
Confidence 344566655433221 23567889999999874 22222333333333333221 3357888888764
No 305
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.01 E-value=0.001 Score=59.45 Aligned_cols=26 Identities=27% Similarity=0.327 Sum_probs=22.3
Q ss_pred hCCEEEEEccCCCCccchhhhhhhcc
Q psy2071 76 QNQCIVLVGETGSGKTTQIPQWCVEY 101 (302)
Q Consensus 76 ~g~i~~liG~nGsGKSTll~~i~g~~ 101 (302)
+..-+.|.||.|+||||+.+.++...
T Consensus 44 ~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 44 PWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCceEEEECCCCccHHHHHHHHHHHc
Confidence 44678999999999999999998754
No 306
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.00 E-value=0.00089 Score=61.61 Aligned_cols=26 Identities=27% Similarity=0.342 Sum_probs=21.9
Q ss_pred hCCEEEEEccCCCCccchhhhhhhcc
Q psy2071 76 QNQCIVLVGETGSGKTTQIPQWCVEY 101 (302)
Q Consensus 76 ~g~i~~liG~nGsGKSTll~~i~g~~ 101 (302)
+..=+.|.||.|||||++.+++++..
T Consensus 181 ~prGvLL~GPPGTGKTllAkAiA~e~ 206 (405)
T 4b4t_J 181 QPKGVILYGPPGTGKTLLARAVAHHT 206 (405)
T ss_dssp CCCCEEEESCSSSSHHHHHHHHHHHH
T ss_pred CCCceEEeCCCCCCHHHHHHHHHHhh
Confidence 33458899999999999999998764
No 307
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=97.00 E-value=0.00016 Score=65.95 Aligned_cols=24 Identities=33% Similarity=0.273 Sum_probs=20.6
Q ss_pred EEEEEccCCCCccchhhhhhhccc
Q psy2071 79 CIVLVGETGSGKTTQIPQWCVEYS 102 (302)
Q Consensus 79 i~~liG~nGsGKSTll~~i~g~~~ 102 (302)
+++|+|+||||||||++.++|...
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~ 204 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQ 204 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCCc
Confidence 389999999999999999998654
No 308
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=96.99 E-value=0.0017 Score=59.95 Aligned_cols=156 Identities=16% Similarity=0.157 Sum_probs=77.3
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcc-cccCCCEEEeecCchhhhHHHHHHHhhhhhccccccceeeeee
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEY-SKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIR 144 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~-~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 144 (302)
+.......+..| -+.|.+|+|+|||...-.++... ....+.+.+.+ |.+.-.......+....+.. ...+..
T Consensus 13 ~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~--P~~~L~~q~~~~~~~~~~~~-~~~v~~--- 85 (494)
T 1wp9_A 13 YQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLA--PTKPLVLQHAESFRRLFNLP-PEKIVA--- 85 (494)
T ss_dssp HHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEEC--SSHHHHHHHHHHHHHHBCSC-GGGEEE---
T ss_pred HHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEE--CCHHHHHHHHHHHHHHhCcc-hhheEE---
Confidence 344444555566 77889999999998765443322 11233444433 32222222222222221110 001111
Q ss_pred ecCCCC--------ccccccccCHHHHHHHhccc-cCCCCCcEEEEcCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEEE
Q psy2071 145 FEDCSS--------PKTVLKYMTDGMLLREGMSD-PMLENYQVILLDEAHERTLATDILMGVLKEVIKQRADLKLVIMSA 215 (302)
Q Consensus 145 ~~~~~~--------~~~~~~~lS~G~~qr~~la~-al~~~p~lliLDE~~~p~~~lD~~~~~l~~ll~~~~~~~~~ii~~ 215 (302)
+.+... ....+-..|.+...+..... ....+.++||+||+|.-..... .......+........+..+++
T Consensus 86 ~~g~~~~~~~~~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~-~~~~~~~~~~~~~~~~~l~lTa 164 (494)
T 1wp9_A 86 LTGEKSPEERSKAWARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYA-YVFIAREYKRQAKNPLVIGLTA 164 (494)
T ss_dssp ECSCSCHHHHHHHHHHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTCH-HHHHHHHHHHHCSSCCEEEEES
T ss_pred eeCCcchhhhhhhccCCCEEEecHHHHHHHHhcCCcchhhceEEEEECCcccCCCCc-HHHHHHHHHhcCCCCeEEEEec
Confidence 111110 12234456777766644332 3467899999999986543212 1222333333344557888999
Q ss_pred ecC--HHHHHhhccCC
Q psy2071 216 TLD--AGKFQQYFDNA 229 (302)
Q Consensus 216 thd--~~~~~~~~d~~ 229 (302)
|.. .+.+..+++.+
T Consensus 165 Tp~~~~~~~~~l~~~l 180 (494)
T 1wp9_A 165 SPGSTPEKIMEVINNL 180 (494)
T ss_dssp CSCSSHHHHHHHHHHT
T ss_pred CCCCCcHHHHHHHHhc
Confidence 975 44555555543
No 309
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.99 E-value=0.00036 Score=61.55 Aligned_cols=49 Identities=16% Similarity=0.163 Sum_probs=36.4
Q ss_pred hHHHHHHHHHHHhC-----------CEEEEEccCCCCccchhhhhhhcccccCCCE-EEee
Q psy2071 64 FEYRTEFMTLLAQN-----------QCIVLVGETGSGKTTQIPQWCVEYSKSVGAK-AVAC 112 (302)
Q Consensus 64 ~~~~~~i~~~i~~g-----------~i~~liG~nGsGKSTll~~i~g~~~~~~G~~-~i~~ 112 (302)
..+.+.+...+..+ ..+.|.||+|+||||+.+.++....+..+.. .+++
T Consensus 23 ~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~ 83 (311)
T 4fcw_A 23 DEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDM 83 (311)
T ss_dssp HHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEG
T ss_pred HHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeec
Confidence 34556666666664 5899999999999999999999877665543 3443
No 310
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=96.96 E-value=0.0057 Score=51.76 Aligned_cols=171 Identities=13% Similarity=0.083 Sum_probs=77.0
Q ss_pred CCCCCCChhhHHHHHhhcCCC-hhHHHHHHHHHHHhCCEEEEEccCCCCccchh--hhhhhcccccCC-CEEEeecCchh
Q psy2071 42 FTGYPYTPRYHELHRKRITLP-VFEYRTEFMTLLAQNQCIVLVGETGSGKTTQI--PQWCVEYSKSVG-AKAVACTQPRR 117 (302)
Q Consensus 42 ~~~~~~~~~~~~l~~~r~~lp-~~~~~~~i~~~i~~g~i~~liG~nGsGKSTll--~~i~g~~~~~~G-~~~i~~~~~~~ 117 (302)
|..+...+...+..... .+. -+.+.......+..|.-+.+.+|+|||||... +++..+.....+ .+.+. .|.+
T Consensus 32 f~~l~l~~~l~~~l~~~-g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil--~Pt~ 108 (237)
T 3bor_A 32 FDDMNLKESLLRGIYAY-GFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVL--APTR 108 (237)
T ss_dssp GGGSCCCHHHHHHHHHH-TCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTTSCSCCEEEE--CSSH
T ss_pred hhhcCCCHHHHHHHHHC-CCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEE--ECcH
Confidence 44445555555433322 121 23344455556677888999999999999753 222222211122 33332 2333
Q ss_pred hhHHHHHHHhhhhhccccccceeeeeee-------cCCCCccccccccCHHHHHHHhccc-cCCCCCcEEEEcCCCCCCc
Q psy2071 118 VAAMSVAQRVSEEMDCQLGQEVGYSIRF-------EDCSSPKTVLKYMTDGMLLREGMSD-PMLENYQVILLDEAHERTL 189 (302)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~-------~~~~~~~~~~~~lS~G~~qr~~la~-al~~~p~lliLDE~~~p~~ 189 (302)
.-+......+.... ......+...... .........+-..|.|......-.. .-+.+.++||+||+|.-
T Consensus 109 ~L~~q~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~-- 185 (237)
T 3bor_A 109 ELAQQIQKVILALG-DYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEM-- 185 (237)
T ss_dssp HHHHHHHHHHHHHT-TTTTCCEEEECC-------------CCCSEEEECHHHHHHHHHTTSSCSTTCCEEEEESHHHH--
T ss_pred HHHHHHHHHHHHHh-hhcCceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhCCcCcccCcEEEECCchHh--
Confidence 22222222221111 1101111111000 0000011233445666655433222 23567899999997631
Q ss_pred chHH-HHHHHHHHHHHcC-CCcEEEEEEecCH
Q psy2071 190 ATDI-LMGVLKEVIKQRA-DLKLVIMSATLDA 219 (302)
Q Consensus 190 ~lD~-~~~~l~~ll~~~~-~~~~~ii~~thd~ 219 (302)
+|. ....+..++.... ...++++++|...
T Consensus 186 -~~~~~~~~l~~i~~~~~~~~~~i~~SAT~~~ 216 (237)
T 3bor_A 186 -LSRGFKDQIYEIFQKLNTSIQVVLLSATMPT 216 (237)
T ss_dssp -HHTTCHHHHHHHHHHSCTTCEEEEECSSCCH
T ss_pred -hccCcHHHHHHHHHhCCCCCeEEEEEEecCH
Confidence 111 1133445555443 3467788888754
No 311
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.94 E-value=0.001 Score=62.01 Aligned_cols=27 Identities=22% Similarity=0.311 Sum_probs=22.7
Q ss_pred HhCCEEEEEccCCCCccchhhhhhhcc
Q psy2071 75 AQNQCIVLVGETGSGKTTQIPQWCVEY 101 (302)
Q Consensus 75 ~~g~i~~liG~nGsGKSTll~~i~g~~ 101 (302)
.+..=+.|.||.|||||++.+++++..
T Consensus 213 ~~prGvLL~GPPGtGKTllAkAiA~e~ 239 (437)
T 4b4t_L 213 KPPKGVLLYGPPGTGKTLLAKAVAATI 239 (437)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 344568999999999999999998764
No 312
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.93 E-value=0.0018 Score=56.99 Aligned_cols=26 Identities=23% Similarity=0.280 Sum_probs=21.8
Q ss_pred CCEEEEEccCCCCccchhhhhhhccc
Q psy2071 77 NQCIVLVGETGSGKTTQIPQWCVEYS 102 (302)
Q Consensus 77 g~i~~liG~nGsGKSTll~~i~g~~~ 102 (302)
+..+.|.||+|+||||+.+.++..+.
T Consensus 67 ~~~vll~G~~GtGKT~la~~la~~l~ 92 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVALKMAGLLH 92 (309)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH
Confidence 34699999999999999998876553
No 313
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.93 E-value=0.00024 Score=57.60 Aligned_cols=22 Identities=32% Similarity=0.397 Sum_probs=20.2
Q ss_pred EEEEEccCCCCccchhhhhhhc
Q psy2071 79 CIVLVGETGSGKTTQIPQWCVE 100 (302)
Q Consensus 79 i~~liG~nGsGKSTll~~i~g~ 100 (302)
.++|+|++|+|||||++.+++.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999874
No 314
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.92 E-value=0.0012 Score=61.41 Aligned_cols=25 Identities=24% Similarity=0.363 Sum_probs=21.5
Q ss_pred CCEEEEEccCCCCccchhhhhhhcc
Q psy2071 77 NQCIVLVGETGSGKTTQIPQWCVEY 101 (302)
Q Consensus 77 g~i~~liG~nGsGKSTll~~i~g~~ 101 (302)
..=+.|.||.|||||++.+++++..
T Consensus 206 prGiLL~GPPGtGKT~lakAiA~~~ 230 (428)
T 4b4t_K 206 PRGVLLYGPPGTGKTMLVKAVANST 230 (428)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 3448999999999999999998764
No 315
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=96.91 E-value=0.0057 Score=57.88 Aligned_cols=62 Identities=13% Similarity=0.251 Sum_probs=37.6
Q ss_pred ccccCHHHHHHHhcccc--CCCCCcEEEEcCCCCCCcchHHHHHHHHHHHHHc------CCCcEEEEEEec
Q psy2071 155 LKYMTDGMLLREGMSDP--MLENYQVILLDEAHERTLATDILMGVLKEVIKQR------ADLKLVIMSATL 217 (302)
Q Consensus 155 ~~~lS~G~~qr~~la~a--l~~~p~lliLDE~~~p~~~lD~~~~~l~~ll~~~------~~~~~~ii~~th 217 (302)
+-..|.|...+..-... .+.+.++||+||+|.-.... .....+...+... ....+..+++|.
T Consensus 105 i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT~ 174 (555)
T 3tbk_A 105 IIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNH-PYNQIMFRYLDHKLGESRDPLPQVVGLTASV 174 (555)
T ss_dssp EEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTC-HHHHHHHHHHHHHTSSCCSCCCEEEEEESCC
T ss_pred EEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcc-hHHHHHHHHHHhhhccccCCCCeEEEEecCc
Confidence 44467777666544333 46778999999998754432 2333444444332 223588888887
No 316
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.89 E-value=0.00026 Score=56.59 Aligned_cols=23 Identities=26% Similarity=0.215 Sum_probs=20.5
Q ss_pred EEEEEccCCCCccchhhhhhhcc
Q psy2071 79 CIVLVGETGSGKTTQIPQWCVEY 101 (302)
Q Consensus 79 i~~liG~nGsGKSTll~~i~g~~ 101 (302)
+++|+|++||||||+.+.|+..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999987654
No 317
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=96.89 E-value=0.0043 Score=55.28 Aligned_cols=24 Identities=33% Similarity=0.387 Sum_probs=20.7
Q ss_pred CEEEEEccCCCCccchhhhhhhcc
Q psy2071 78 QCIVLVGETGSGKTTQIPQWCVEY 101 (302)
Q Consensus 78 ~i~~liG~nGsGKSTll~~i~g~~ 101 (302)
..+.|.||+|+||||+.+.++...
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~~ 79 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYEM 79 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHT
T ss_pred CeEEEECcCCCCHHHHHHHHHHHh
Confidence 468999999999999999986653
No 318
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.89 E-value=0.00093 Score=61.86 Aligned_cols=26 Identities=23% Similarity=0.330 Sum_probs=22.2
Q ss_pred hCCEEEEEccCCCCccchhhhhhhcc
Q psy2071 76 QNQCIVLVGETGSGKTTQIPQWCVEY 101 (302)
Q Consensus 76 ~g~i~~liG~nGsGKSTll~~i~g~~ 101 (302)
...=+.|.||.|||||++.+++++..
T Consensus 215 ~prGvLLyGPPGTGKTlLAkAiA~e~ 240 (437)
T 4b4t_I 215 PPKGVILYGAPGTGKTLLAKAVANQT 240 (437)
T ss_dssp CCSEEEEESSTTTTHHHHHHHHHHHH
T ss_pred CCCCCceECCCCchHHHHHHHHHHHh
Confidence 34558999999999999999998764
No 319
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=96.89 E-value=0.014 Score=51.49 Aligned_cols=148 Identities=14% Similarity=0.133 Sum_probs=70.5
Q ss_pred HHHHHHHHHhC--CEEEEEccCCCCccch--hhhhhhcccccCC-CEEEeecCchhhhHHHHHHHhhhhhccccccceee
Q psy2071 67 RTEFMTLLAQN--QCIVLVGETGSGKTTQ--IPQWCVEYSKSVG-AKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGY 141 (302)
Q Consensus 67 ~~~i~~~i~~g--~i~~liG~nGsGKSTl--l~~i~g~~~~~~G-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 141 (302)
.......+-.| .-+.+.+|+|||||.. ++++..+.....| .+.|. .|.+.-+..+...+.........-.+.+
T Consensus 119 Q~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~~~~~~lil--~PtreLa~Q~~~~~~~l~~~~~~~~~~~ 196 (300)
T 3fmo_B 119 QENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCL--SPTYELALQTGKVIEQMGKFYPELKLAY 196 (300)
T ss_dssp HHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEE--CSSHHHHHHHHHHHHHHTTTSTTCCEEE
T ss_pred HHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhccCCCceEEEE--cCcHHHHHHHHHHHHHHHhhCCCcEEEE
Confidence 44444555555 8899999999999974 4555444332222 33332 2333222222222211111000111222
Q ss_pred eeeecC---CCCccccccccCHHHHHHHhcc--ccCCCCCcEEEEcCCCCCCcchH-H-HHHHHHHHHHHcC-CCcEEEE
Q psy2071 142 SIRFED---CSSPKTVLKYMTDGMLLREGMS--DPMLENYQVILLDEAHERTLATD-I-LMGVLKEVIKQRA-DLKLVIM 213 (302)
Q Consensus 142 ~~~~~~---~~~~~~~~~~lS~G~~qr~~la--~al~~~p~lliLDE~~~p~~~lD-~-~~~~l~~ll~~~~-~~~~~ii 213 (302)
...... .......+-..+.|........ ..-+.+.++||+||+|.- +| . ....+..++.... ...++++
T Consensus 197 ~~~~~~~~~~~~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVlDEad~l---~~~~~~~~~~~~i~~~~~~~~q~i~~ 273 (300)
T 3fmo_B 197 AVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVM---IATQGHQDQSIRIQRMLPRNCQMLLF 273 (300)
T ss_dssp ESTTCCCCTTCCCCCSEEEECHHHHHHHHTTTCCCCGGGCSEEEETTHHHH---HHSTTHHHHHHHHHTTSCTTCEEEEE
T ss_pred EeCCccHhhhhcCCCCEEEECHHHHHHHHHhcCCCChhhceEEEEeCHHHH---hhccCcHHHHHHHHHhCCCCCEEEEE
Confidence 111111 0011123445677776555433 223578899999997632 22 1 1133444444333 3457778
Q ss_pred EEecCH
Q psy2071 214 SATLDA 219 (302)
Q Consensus 214 ~~thd~ 219 (302)
++|..-
T Consensus 274 SAT~~~ 279 (300)
T 3fmo_B 274 SATFED 279 (300)
T ss_dssp ESCCCH
T ss_pred eccCCH
Confidence 888754
No 320
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=96.89 E-value=0.0072 Score=58.23 Aligned_cols=65 Identities=20% Similarity=0.279 Sum_probs=35.6
Q ss_pred ccccCHHHHHHHhcc--ccCCCCCcEEEEcCCCCCC-cchHHHHHHHHHHHHHcC-----CCcEEEEEEecCH
Q psy2071 155 LKYMTDGMLLREGMS--DPMLENYQVILLDEAHERT-LATDILMGVLKEVIKQRA-----DLKLVIMSATLDA 219 (302)
Q Consensus 155 ~~~lS~G~~qr~~la--~al~~~p~lliLDE~~~p~-~~lD~~~~~l~~ll~~~~-----~~~~~ii~~thd~ 219 (302)
+-..|.|......-. ...+.+.++||+||+|.-. .+.......+...+.... ...++++++|...
T Consensus 153 IlV~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~ 225 (579)
T 3sqw_A 153 IVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDD 225 (579)
T ss_dssp EEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCT
T ss_pred EEEECHHHHHHHHHhccccccccCCEEEEEChHHhhcCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCCh
Confidence 444566665443221 3357788999999987422 222233333333333222 3357888888764
No 321
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=96.89 E-value=0.0012 Score=58.93 Aligned_cols=25 Identities=28% Similarity=0.364 Sum_probs=21.6
Q ss_pred CCEEEEEccCCCCccchhhhhhhcc
Q psy2071 77 NQCIVLVGETGSGKTTQIPQWCVEY 101 (302)
Q Consensus 77 g~i~~liG~nGsGKSTll~~i~g~~ 101 (302)
..-+.|.||+|+||||+.+.++...
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~~ 75 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATEA 75 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHH
Confidence 4568999999999999999997653
No 322
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=96.88 E-value=0.00022 Score=63.29 Aligned_cols=26 Identities=23% Similarity=0.273 Sum_probs=22.8
Q ss_pred hCCEEEEEccCCCCccchhhhhhhcc
Q psy2071 76 QNQCIVLVGETGSGKTTQIPQWCVEY 101 (302)
Q Consensus 76 ~g~i~~liG~nGsGKSTll~~i~g~~ 101 (302)
++.+++|+|++|+|||||++.++|..
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~ 32 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQK 32 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCS
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCC
Confidence 34589999999999999999999863
No 323
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.88 E-value=0.00025 Score=60.33 Aligned_cols=29 Identities=21% Similarity=0.209 Sum_probs=24.3
Q ss_pred HHHhCCEEEEEccCCCCccchhhhhhhcc
Q psy2071 73 LLAQNQCIVLVGETGSGKTTQIPQWCVEY 101 (302)
Q Consensus 73 ~i~~g~i~~liG~nGsGKSTll~~i~g~~ 101 (302)
.-.+|.+++|+|++||||||+.+.|++.+
T Consensus 12 ~~~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 12 DKMKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp --CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred cccCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45678899999999999999999998743
No 324
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=96.87 E-value=0.00017 Score=66.30 Aligned_cols=28 Identities=21% Similarity=0.164 Sum_probs=24.2
Q ss_pred HHHhCCEEEEEccCCCCccchhhhhhhc
Q psy2071 73 LLAQNQCIVLVGETGSGKTTQIPQWCVE 100 (302)
Q Consensus 73 ~i~~g~i~~liG~nGsGKSTll~~i~g~ 100 (302)
.+..+..++|+|+||+|||||++.+++.
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 3457788999999999999999999987
No 325
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=96.87 E-value=0.002 Score=59.10 Aligned_cols=33 Identities=27% Similarity=0.402 Sum_probs=25.5
Q ss_pred CCChhHHHHHHHHHHHhCCEEEEEccCCCCccc
Q psy2071 60 TLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTT 92 (302)
Q Consensus 60 ~lp~~~~~~~i~~~i~~g~i~~liG~nGsGKST 92 (302)
.+..+.+.......+-.|+-+.+.+|+|||||.
T Consensus 19 ~~~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~ 51 (414)
T 3oiy_A 19 GKDLTGYQRLWAKRIVQGKSFTMVAPTGVGKTT 51 (414)
T ss_dssp SSCCCHHHHHHHHHHTTTCCEECCSCSSSSHHH
T ss_pred CCCCCHHHHHHHHHHhcCCCEEEEeCCCCCHHH
Confidence 333345566666677788889999999999998
No 326
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.86 E-value=0.00034 Score=60.25 Aligned_cols=39 Identities=26% Similarity=0.223 Sum_probs=29.3
Q ss_pred HHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecC
Q psy2071 74 LAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQ 114 (302)
Q Consensus 74 i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~ 114 (302)
...+.+++|+|++||||||+.+.|+..+. .+.+.+.+..
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~~D~ 67 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIIDGDS 67 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHHHTT--TCCEEECGGG
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEecHH
Confidence 34567899999999999999999987653 2445555543
No 327
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=96.86 E-value=0.0056 Score=58.09 Aligned_cols=62 Identities=15% Similarity=0.211 Sum_probs=36.9
Q ss_pred ccccCHHHHHHHhcccc--CCCCCcEEEEcCCCCCCcchHHHHHHHHHHHHH-----cCCCcEEEEEEec
Q psy2071 155 LKYMTDGMLLREGMSDP--MLENYQVILLDEAHERTLATDILMGVLKEVIKQ-----RADLKLVIMSATL 217 (302)
Q Consensus 155 ~~~lS~G~~qr~~la~a--l~~~p~lliLDE~~~p~~~lD~~~~~l~~ll~~-----~~~~~~~ii~~th 217 (302)
+-..|.|...+..-... .+.+.++||+||+|.-...- ....++..++.. .....+..+++|.
T Consensus 108 i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~lSAT~ 176 (556)
T 4a2p_A 108 IIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNH-PYNVLMTRYLEQKFNSASQLPQILGLTASV 176 (556)
T ss_dssp EEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTTS-HHHHHHHHHHHHHHCC---CCEEEEEESCC
T ss_pred EEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCcc-hHHHHHHHHHHhhhcccCCCCeEEEEeCCc
Confidence 44567777666544333 47789999999998654332 222333444432 1234588888887
No 328
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.85 E-value=0.0012 Score=61.88 Aligned_cols=49 Identities=10% Similarity=0.082 Sum_probs=34.6
Q ss_pred hHHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEee
Q psy2071 64 FEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVAC 112 (302)
Q Consensus 64 ~~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~ 112 (302)
+..++.+.--+.+|+++.|.|++|+||||+.-+++.........+.+..
T Consensus 184 ~~~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fS 232 (444)
T 3bgw_A 184 FTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS 232 (444)
T ss_dssp CHHHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred cHHHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEE
Confidence 3446666655889999999999999999998877665432222444443
No 329
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=96.85 E-value=0.0028 Score=59.23 Aligned_cols=26 Identities=27% Similarity=0.327 Sum_probs=22.4
Q ss_pred hCCEEEEEccCCCCccchhhhhhhcc
Q psy2071 76 QNQCIVLVGETGSGKTTQIPQWCVEY 101 (302)
Q Consensus 76 ~g~i~~liG~nGsGKSTll~~i~g~~ 101 (302)
+..-+.|.||+|+||||+.+.++...
T Consensus 166 ~~~~vLL~GppGtGKT~lA~aia~~~ 191 (444)
T 2zan_A 166 PWRGILLFGPPGTGKSYLAKAVATEA 191 (444)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHc
Confidence 34678999999999999999998764
No 330
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=96.84 E-value=0.0037 Score=58.62 Aligned_cols=38 Identities=16% Similarity=0.165 Sum_probs=29.5
Q ss_pred HHHHHHHHHHhCC-EEEEEccCCCCccchhhhhhhcccc
Q psy2071 66 YRTEFMTLLAQNQ-CIVLVGETGSGKTTQIPQWCVEYSK 103 (302)
Q Consensus 66 ~~~~i~~~i~~g~-i~~liG~nGsGKSTll~~i~g~~~~ 103 (302)
+...+...+..++ .+.|.|+.|+||||++..++..+..
T Consensus 33 av~~~~~~i~~~~~~~li~G~aGTGKT~ll~~~~~~l~~ 71 (459)
T 3upu_A 33 AFNIVMKAIKEKKHHVTINGPAGTGATTLTKFIIEALIS 71 (459)
T ss_dssp HHHHHHHHHHSSSCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 4455555666666 9999999999999999888766543
No 331
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=96.84 E-value=0.00031 Score=59.75 Aligned_cols=28 Identities=36% Similarity=0.360 Sum_probs=23.4
Q ss_pred EEEEEccCCCCccchhhhhhhcccccCC
Q psy2071 79 CIVLVGETGSGKTTQIPQWCVEYSKSVG 106 (302)
Q Consensus 79 i~~liG~nGsGKSTll~~i~g~~~~~~G 106 (302)
.++|+|++|+|||||++.|+|...+..+
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~~~~ 58 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVFHSG 58 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCSCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcCccC
Confidence 5899999999999999999987655444
No 332
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=96.83 E-value=0.0002 Score=65.50 Aligned_cols=36 Identities=14% Similarity=0.191 Sum_probs=32.2
Q ss_pred HHHHHHHHHhCCEEEEEccCCCCccchhhhhhhccc
Q psy2071 67 RTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYS 102 (302)
Q Consensus 67 ~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~ 102 (302)
.-|+++.+.+|+.++|+|++|||||||+++|+....
T Consensus 164 aID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~ 199 (422)
T 3ice_A 164 VLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA 199 (422)
T ss_dssp HHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHH
T ss_pred eeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHh
Confidence 457888999999999999999999999999988664
No 333
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.83 E-value=0.00075 Score=62.80 Aligned_cols=26 Identities=19% Similarity=0.287 Sum_probs=22.3
Q ss_pred hCCEEEEEccCCCCccchhhhhhhcc
Q psy2071 76 QNQCIVLVGETGSGKTTQIPQWCVEY 101 (302)
Q Consensus 76 ~g~i~~liG~nGsGKSTll~~i~g~~ 101 (302)
...=+.|.||.|||||++.+++++..
T Consensus 214 ~prGvLLyGPPGTGKTllAkAiA~e~ 239 (434)
T 4b4t_M 214 APKGALMYGPPGTGKTLLARACAAQT 239 (434)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCeeEEECcCCCCHHHHHHHHHHHh
Confidence 34568999999999999999998864
No 334
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=96.83 E-value=0.0013 Score=57.38 Aligned_cols=41 Identities=17% Similarity=0.192 Sum_probs=25.2
Q ss_pred cCCCCCcEEEEcCCCCCCcchHHHHHHHHHHHHHc-CCCcEEEEEEec
Q psy2071 171 PMLENYQVILLDEAHERTLATDILMGVLKEVIKQR-ADLKLVIMSATL 217 (302)
Q Consensus 171 al~~~p~lliLDE~~~p~~~lD~~~~~l~~ll~~~-~~~~~~ii~~th 217 (302)
....+.+++|+||+|.-.. . .+..++... ....+..+++|.
T Consensus 221 ~~~~~~~~vIiDEaH~~~~---~---~~~~il~~~~~~~~~l~lSATp 262 (282)
T 1rif_A 221 EWFSQFGMMMNDECHLATG---K---SISSIISGLNNCMFKFGLSGSL 262 (282)
T ss_dssp GGGGGEEEEEEETGGGCCH---H---HHHHHTTTCTTCCEEEEECSSC
T ss_pred HHHhhCCEEEEECCccCCc---c---cHHHHHHHhhcCCeEEEEeCCC
Confidence 3567789999999886542 2 333444443 234566677775
No 335
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.82 E-value=0.00034 Score=56.90 Aligned_cols=25 Identities=28% Similarity=0.345 Sum_probs=22.0
Q ss_pred CCEEEEEccCCCCccchhhhhhhcc
Q psy2071 77 NQCIVLVGETGSGKTTQIPQWCVEY 101 (302)
Q Consensus 77 g~i~~liG~nGsGKSTll~~i~g~~ 101 (302)
|.+++|.|++||||||+.+.|+-.+
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999987644
No 336
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=96.81 E-value=0.00034 Score=57.24 Aligned_cols=34 Identities=15% Similarity=0.139 Sum_probs=20.4
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhc
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVE 100 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~ 100 (302)
+.+++++..+.. .++++|++|+|||||++.+++-
T Consensus 13 ~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 13 VLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp -----------C-EEEEEESTTSSHHHHHHHHHHS
T ss_pred HHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcC
Confidence 456666666555 5799999999999999999863
No 337
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=96.81 E-value=0.0013 Score=60.18 Aligned_cols=27 Identities=26% Similarity=0.311 Sum_probs=21.9
Q ss_pred hCCEEEE--EccCCCCccchhhhhhhccc
Q psy2071 76 QNQCIVL--VGETGSGKTTQIPQWCVEYS 102 (302)
Q Consensus 76 ~g~i~~l--iG~nGsGKSTll~~i~g~~~ 102 (302)
.+..+.| .|+.|+|||||++.++....
T Consensus 49 ~~~~~li~i~G~~G~GKT~L~~~~~~~~~ 77 (412)
T 1w5s_A 49 SDVNMIYGSIGRVGIGKTTLAKFTVKRVS 77 (412)
T ss_dssp CCEEEEEECTTCCSSSHHHHHHHHHHHHH
T ss_pred CCCEEEEeCcCcCCCCHHHHHHHHHHHHH
Confidence 3457777 89999999999999876553
No 338
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=96.80 E-value=0.0048 Score=59.99 Aligned_cols=28 Identities=25% Similarity=0.398 Sum_probs=23.1
Q ss_pred HHhCCEEEEEccCCCCccchhhhhhhcc
Q psy2071 74 LAQNQCIVLVGETGSGKTTQIPQWCVEY 101 (302)
Q Consensus 74 i~~g~i~~liG~nGsGKSTll~~i~g~~ 101 (302)
+-.+.++.|.|+.|+||||++..++..+
T Consensus 161 ~l~~~~~vi~G~pGTGKTt~l~~ll~~l 188 (608)
T 1w36_D 161 ALTRRISVISGGPGTGKTTTVAKLLAAL 188 (608)
T ss_dssp HHTBSEEEEECCTTSTHHHHHHHHHHHH
T ss_pred HhcCCCEEEEeCCCCCHHHHHHHHHHHH
Confidence 3468899999999999999988776544
No 339
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.80 E-value=0.0019 Score=57.52 Aligned_cols=26 Identities=15% Similarity=0.120 Sum_probs=21.5
Q ss_pred HHhCCEEEEEccCCCCccchhhhhhhc
Q psy2071 74 LAQNQCIVLVGETGSGKTTQIPQWCVE 100 (302)
Q Consensus 74 i~~g~i~~liG~nGsGKSTll~~i~g~ 100 (302)
+.+| ++.|.||+|||||||.-+++..
T Consensus 26 l~~G-iteI~G~pGsGKTtL~Lq~~~~ 51 (333)
T 3io5_A 26 MQSG-LLILAGPSKSFKSNFGLTMVSS 51 (333)
T ss_dssp BCSE-EEEEEESSSSSHHHHHHHHHHH
T ss_pred CcCC-eEEEECCCCCCHHHHHHHHHHH
Confidence 6678 8999999999999996665543
No 340
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.79 E-value=0.00038 Score=56.14 Aligned_cols=25 Identities=20% Similarity=0.280 Sum_probs=22.1
Q ss_pred CCEEEEEccCCCCccchhhhhhhcc
Q psy2071 77 NQCIVLVGETGSGKTTQIPQWCVEY 101 (302)
Q Consensus 77 g~i~~liG~nGsGKSTll~~i~g~~ 101 (302)
+.++.|+|++||||||+.+.++-.+
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 5689999999999999999987654
No 341
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=96.79 E-value=0.00048 Score=63.24 Aligned_cols=50 Identities=14% Similarity=0.155 Sum_probs=37.3
Q ss_pred CCCcEEEEcCCCCCCcchHH-HHHHHHHHHHHcCCCcEEEEEEecCHHHHH
Q psy2071 174 ENYQVILLDEAHERTLATDI-LMGVLKEVIKQRADLKLVIMSATLDAGKFQ 223 (302)
Q Consensus 174 ~~p~lliLDE~~~p~~~lD~-~~~~l~~ll~~~~~~~~~ii~~thd~~~~~ 223 (302)
..|.++++||+|.-...-.+ ....+.++++..++.+..++++||++..+.
T Consensus 261 ~~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk~g~~~~~~tQ~~~d~~ 311 (392)
T 4ag6_A 261 RERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRKYNGSLIVISQNVIDFL 311 (392)
T ss_dssp CTTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGGGTCEEEEEESCGGGGG
T ss_pred CccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhhhCeEEEEEcCCHHHhh
Confidence 46899999998766543223 336677888777777899999999987664
No 342
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.78 E-value=0.00044 Score=56.70 Aligned_cols=32 Identities=38% Similarity=0.580 Sum_probs=26.5
Q ss_pred HHHHHHhCCEEEEEccCCCCccchhhhhhhcc
Q psy2071 70 FMTLLAQNQCIVLVGETGSGKTTQIPQWCVEY 101 (302)
Q Consensus 70 i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~ 101 (302)
+...+..+.+++|+|+.||||||+.+.++-.+
T Consensus 5 ~~~~~~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 5 FMEDLRKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHHHHHHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cccccCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 34456788999999999999999999887543
No 343
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.77 E-value=0.0017 Score=53.77 Aligned_cols=65 Identities=17% Similarity=0.151 Sum_probs=40.6
Q ss_pred HhccccCC--CCCcEEEEcCCCCCCcchH--HHH-HHHHHHHHHcCCCcEEEEEEecCHHHHHhhccCCCeee
Q psy2071 166 EGMSDPML--ENYQVILLDEAHERTLATD--ILM-GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMN 233 (302)
Q Consensus 166 ~~la~al~--~~p~lliLDE~~~p~~~lD--~~~-~~l~~ll~~~~~~~~~ii~~thd~~~~~~~~d~~~~l~ 233 (302)
+..++..+ .++++||||| -+..++ .+. ..+.+++..+.+...+||+.-.-.+.+.+++|.|.-|.
T Consensus 109 l~~a~~~l~~~~yDlvILDE---i~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap~~l~e~AD~VTem~ 178 (196)
T 1g5t_A 109 WQHGKRMLADPLLDMVVLDE---LTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCHRDILDLADTVSELR 178 (196)
T ss_dssp HHHHHHHTTCTTCSEEEEET---HHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCCHHHHHHCSEEEECC
T ss_pred HHHHHHHHhcCCCCEEEEeC---CCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCcHHHHHhCcceeeec
Confidence 33444445 6799999999 332222 111 34566666666655555554455678889999887775
No 344
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=96.77 E-value=0.0015 Score=59.15 Aligned_cols=170 Identities=14% Similarity=0.099 Sum_probs=78.4
Q ss_pred CCCCCCChhhHHHHHhhcCCChhHHHHHHHHHHHhCCEEEEEccCCCCccch--hhhhhhcccccC-CCEEEeecCchhh
Q psy2071 42 FTGYPYTPRYHELHRKRITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQ--IPQWCVEYSKSV-GAKAVACTQPRRV 118 (302)
Q Consensus 42 ~~~~~~~~~~~~l~~~r~~lp~~~~~~~i~~~i~~g~i~~liG~nGsGKSTl--l~~i~g~~~~~~-G~~~i~~~~~~~~ 118 (302)
|...+..+...+......--.-+.+.......+..|.-+.+.+|+|+|||.. ++++..+..... +.+.+.. |.+.
T Consensus 23 f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~--P~~~ 100 (394)
T 1fuu_A 23 FDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLA--PTRE 100 (394)
T ss_dssp SGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTTCCSCCEEEEC--SSHH
T ss_pred hhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhccCCCCCEEEEc--CCHH
Confidence 3444444444443333211112333455555666788889999999999975 333333222222 3444432 3322
Q ss_pred hHHHHHHHhhhhhccccccceeeeeeecCCC-------CccccccccCHHHHHHHhcc-ccCCCCCcEEEEcCCCCCCcc
Q psy2071 119 AAMSVAQRVSEEMDCQLGQEVGYSIRFEDCS-------SPKTVLKYMTDGMLLREGMS-DPMLENYQVILLDEAHERTLA 190 (302)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-------~~~~~~~~lS~G~~qr~~la-~al~~~p~lliLDE~~~p~~~ 190 (302)
-+......+..... .....+.... .... .....+-..|.+...+.... ...+.+.+++|+||+|.-
T Consensus 101 L~~q~~~~~~~~~~-~~~~~~~~~~--g~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIiDEah~~--- 174 (394)
T 1fuu_A 101 LALQIQKVVMALAF-HMDIKVHACI--GGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEM--- 174 (394)
T ss_dssp HHHHHHHHHHHHTT-TSCCCEEEEC--SSCCHHHHHHHHHHCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHH---
T ss_pred HHHHHHHHHHHHhc-cCCeeEEEEe--CCCchHHHHhhcCCCCEEEECHHHHHHHHHhCCcchhhCcEEEEEChHHh---
Confidence 22222222211110 0011111110 1100 00223445676765554332 234678899999998751
Q ss_pred hHH-HHHHHHHHHHHcC-CCcEEEEEEecCH
Q psy2071 191 TDI-LMGVLKEVIKQRA-DLKLVIMSATLDA 219 (302)
Q Consensus 191 lD~-~~~~l~~ll~~~~-~~~~~ii~~thd~ 219 (302)
.+. ....+..++.... ...++++++|...
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~ 205 (394)
T 1fuu_A 175 LSSGFKEQIYQIFTLLPPTTQVVLLSATMPN 205 (394)
T ss_dssp HHTTCHHHHHHHHHHSCTTCEEEEECSSCCH
T ss_pred hCCCcHHHHHHHHHhCCCCceEEEEEEecCH
Confidence 111 1133444444443 3457888888764
No 345
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.77 E-value=0.00034 Score=57.60 Aligned_cols=22 Identities=36% Similarity=0.605 Sum_probs=19.2
Q ss_pred EEEEEccCCCCccchhhhhhhc
Q psy2071 79 CIVLVGETGSGKTTQIPQWCVE 100 (302)
Q Consensus 79 i~~liG~nGsGKSTll~~i~g~ 100 (302)
.++|+||+|||||||++.|+-.
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 4789999999999999988654
No 346
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=96.76 E-value=0.014 Score=53.20 Aligned_cols=148 Identities=14% Similarity=0.117 Sum_probs=68.9
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhh--hhhhccc-ccCCCEEEeecCchhhhHHHHHHHhhhhhccccccceeee
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIP--QWCVEYS-KSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYS 142 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~--~i~g~~~-~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 142 (302)
+.......+..|.-+.+.+|+|||||...- ++..+.. ...+.+.+.. |.+.-+......+... .......+...
T Consensus 63 ~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~--Pt~~L~~q~~~~~~~~-~~~~~~~~~~~ 139 (410)
T 2j0s_A 63 IQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILA--PTRELAVQIQKGLLAL-GDYMNVQCHAC 139 (410)
T ss_dssp HHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEEC--SSHHHHHHHHHHHHHH-TTTTTCCEEEE
T ss_pred HHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhhccCCceEEEEc--CcHHHHHHHHHHHHHH-hccCCeEEEEE
Confidence 445555567778889999999999997532 2222211 1223444432 3332222222222111 10111111111
Q ss_pred eeecCCCC--------ccccccccCHHHHHHHhcc-ccCCCCCcEEEEcCCCCCCcchHHHHHHHHHHHHHcC-CCcEEE
Q psy2071 143 IRFEDCSS--------PKTVLKYMTDGMLLREGMS-DPMLENYQVILLDEAHERTLATDILMGVLKEVIKQRA-DLKLVI 212 (302)
Q Consensus 143 ~~~~~~~~--------~~~~~~~lS~G~~qr~~la-~al~~~p~lliLDE~~~p~~~lD~~~~~l~~ll~~~~-~~~~~i 212 (302)
...... ....+-..|.|......-. ...+.+.++||+||+|.-... . ....+..++.... ...+++
T Consensus 140 --~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vViDEah~~~~~-~-~~~~~~~i~~~~~~~~~~i~ 215 (410)
T 2j0s_A 140 --IGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNK-G-FKEQIYDVYRYLPPATQVVL 215 (410)
T ss_dssp --CTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHTST-T-THHHHHHHHTTSCTTCEEEE
T ss_pred --ECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhCCccHhheeEEEEccHHHHHhh-h-hHHHHHHHHHhCccCceEEE
Confidence 011000 0112334566655443322 233567899999998742111 1 1134444544433 346788
Q ss_pred EEEecCHH
Q psy2071 213 MSATLDAG 220 (302)
Q Consensus 213 i~~thd~~ 220 (302)
+++|...+
T Consensus 216 ~SAT~~~~ 223 (410)
T 2j0s_A 216 ISATLPHE 223 (410)
T ss_dssp EESCCCHH
T ss_pred EEcCCCHH
Confidence 88887654
No 347
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.76 E-value=0.0021 Score=56.62 Aligned_cols=36 Identities=19% Similarity=0.301 Sum_probs=27.2
Q ss_pred HHHHHHHHHHhCCE--EEEEccCCCCccchhhhhhhcc
Q psy2071 66 YRTEFMTLLAQNQC--IVLVGETGSGKTTQIPQWCVEY 101 (302)
Q Consensus 66 ~~~~i~~~i~~g~i--~~liG~nGsGKSTll~~i~g~~ 101 (302)
..+.+...+..|.. +.|.||.|+||||+.+.++..+
T Consensus 29 ~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l 66 (323)
T 1sxj_B 29 TIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHEL 66 (323)
T ss_dssp HHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 34455556666653 8999999999999999887654
No 348
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.76 E-value=0.00038 Score=55.54 Aligned_cols=19 Identities=32% Similarity=0.475 Sum_probs=17.9
Q ss_pred EEEEEccCCCCccchhhhh
Q psy2071 79 CIVLVGETGSGKTTQIPQW 97 (302)
Q Consensus 79 i~~liG~nGsGKSTll~~i 97 (302)
+++|.|++||||||+.+.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 7899999999999999987
No 349
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.76 E-value=0.0056 Score=58.25 Aligned_cols=25 Identities=32% Similarity=0.331 Sum_probs=22.2
Q ss_pred CCEEEEEccCCCCccchhhhhhhcc
Q psy2071 77 NQCIVLVGETGSGKTTQIPQWCVEY 101 (302)
Q Consensus 77 g~i~~liG~nGsGKSTll~~i~g~~ 101 (302)
...+.|.||.|+||||+.+.++..+
T Consensus 77 ~~~lLL~GppGtGKTtla~~la~~l 101 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAHLVAQEL 101 (516)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3689999999999999999998765
No 350
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.75 E-value=0.00093 Score=72.45 Aligned_cols=131 Identities=14% Similarity=0.141 Sum_probs=70.7
Q ss_pred HHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhhccccccceeeeeeecCCCCccc
Q psy2071 74 LAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRFEDCSSPKT 153 (302)
Q Consensus 74 i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 153 (302)
+++|+++.|.||+|+|||||..+++.......+.+.+....-. ..... +... +..+.. + .+....
T Consensus 1424 i~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~-~~~l~-a~~~----G~dl~~-l----~v~~~~---- 1488 (2050)
T 3cmu_A 1424 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHA-LDPIY-ARKL----GVDIDN-L----LCSQPD---- 1488 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSC-CCHHH-HHHT----TCCTTT-C----EEECCS----
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccc-cCHHH-HHHc----CCCchh-c----eeecCC----
Confidence 6799999999999999999998876544333345544432211 00011 1111 111111 1 111000
Q ss_pred cccccCHHHHHHHhccccC--CCCCcEEEEcCC--CCCCc-----------ch-HHH-HHHHHHHHHHcCCCcEEEEEEe
Q psy2071 154 VLKYMTDGMLLREGMSDPM--LENYQVILLDEA--HERTL-----------AT-DIL-MGVLKEVIKQRADLKLVIMSAT 216 (302)
Q Consensus 154 ~~~~lS~G~~qr~~la~al--~~~p~lliLDE~--~~p~~-----------~l-D~~-~~~l~~ll~~~~~~~~~ii~~t 216 (302)
+ +++ -+.+++.+ -..|++||+||. ..|.. ++ +.+ .+.+.++.....+.++++|++.
T Consensus 1489 -----~-~E~-~l~~~~~lvr~~~~~lVVIDsi~al~p~~~~~g~~~~~~~~~~~R~lsqlL~~L~~~~~~~~v~VI~tN 1561 (2050)
T 3cmu_A 1489 -----T-GEQ-ALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFIN 1561 (2050)
T ss_dssp -----S-HHH-HHHHHHHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred -----h-HHH-HHHHHHHHHhcCCCCEEEEcChhHhcccccccccccccccchHHHHHHHHHHHHHHHHHhCCcEEEEEc
Confidence 1 121 11222222 257999999993 44422 11 222 3677888877777889998877
Q ss_pred cCHHHHHhhc
Q psy2071 217 LDAGKFQQYF 226 (302)
Q Consensus 217 hd~~~~~~~~ 226 (302)
.....|..++
T Consensus 1562 q~~~~~g~~f 1571 (2050)
T 3cmu_A 1562 QIRMKIGVMF 1571 (2050)
T ss_dssp CEEECTTCCS
T ss_pred cccccchhhc
Confidence 6555555444
No 351
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.74 E-value=0.0012 Score=71.62 Aligned_cols=35 Identities=23% Similarity=0.128 Sum_probs=29.2
Q ss_pred HHHHHH--HHHHhCCEEEEEccCCCCccchhhhhhhc
Q psy2071 66 YRTEFM--TLLAQNQCIVLVGETGSGKTTQIPQWCVE 100 (302)
Q Consensus 66 ~~~~i~--~~i~~g~i~~liG~nGsGKSTll~~i~g~ 100 (302)
.+++++ --+++|+++.|.|++|||||||..+++-.
T Consensus 1068 ~Ld~~lg~ggi~~g~~vll~G~~GtGKT~la~~~~~e 1104 (2050)
T 3cmu_A 1068 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAA 1104 (2050)
T ss_dssp HHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHhccCCcCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 356776 36899999999999999999998887643
No 352
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.73 E-value=0.003 Score=61.03 Aligned_cols=41 Identities=22% Similarity=0.212 Sum_probs=30.2
Q ss_pred HHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEE
Q psy2071 70 FMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAV 110 (302)
Q Consensus 70 i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i 110 (302)
....+..+.++.|.|++|+||||++..++..+......+.+
T Consensus 197 Av~~~~~~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~ 237 (574)
T 3e1s_A 197 VLDQLAGHRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGL 237 (574)
T ss_dssp HHHHHTTCSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred HHHHHHhCCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEE
Confidence 33444568899999999999999999988766543334443
No 353
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.73 E-value=0.00016 Score=60.14 Aligned_cols=25 Identities=24% Similarity=0.416 Sum_probs=22.1
Q ss_pred EEEEEccCCCCccchhhhhhhcccc
Q psy2071 79 CIVLVGETGSGKTTQIPQWCVEYSK 103 (302)
Q Consensus 79 i~~liG~nGsGKSTll~~i~g~~~~ 103 (302)
+++|.|++||||||+++.|...+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 6899999999999999999877653
No 354
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.73 E-value=0.00068 Score=54.88 Aligned_cols=26 Identities=31% Similarity=0.487 Sum_probs=23.0
Q ss_pred CEEEEEccCCCCccchhhhhhhcccc
Q psy2071 78 QCIVLVGETGSGKTTQIPQWCVEYSK 103 (302)
Q Consensus 78 ~i~~liG~nGsGKSTll~~i~g~~~~ 103 (302)
.+++|+|++||||||++..++..+..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~ 30 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVR 30 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHh
Confidence 47899999999999999999887664
No 355
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.69 E-value=0.0022 Score=59.89 Aligned_cols=28 Identities=25% Similarity=0.297 Sum_probs=23.5
Q ss_pred HHhCCEEEEEccCCCCccchhhhhhhcc
Q psy2071 74 LAQNQCIVLVGETGSGKTTQIPQWCVEY 101 (302)
Q Consensus 74 i~~g~i~~liG~nGsGKSTll~~i~g~~ 101 (302)
+....=+.|.||.|||||++.+++++..
T Consensus 240 i~pprGILLyGPPGTGKTlLAkAiA~e~ 267 (467)
T 4b4t_H 240 IDPPKGILLYGPPGTGKTLCARAVANRT 267 (467)
T ss_dssp CCCCSEEEECSCTTSSHHHHHHHHHHHH
T ss_pred CCCCCceEeeCCCCCcHHHHHHHHHhcc
Confidence 3455668999999999999999998764
No 356
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=96.69 E-value=0.00023 Score=58.68 Aligned_cols=34 Identities=18% Similarity=0.124 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHhCCEEEEEccCCCCccchhhhhhh
Q psy2071 65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCV 99 (302)
Q Consensus 65 ~~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g 99 (302)
.+.+++++..+... ++|+|++|+|||||++.+++
T Consensus 14 ~~l~~~~~~~~~~k-i~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 14 SVLQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp HHHHHHTCTTCCEE-EEEEEETTSSHHHHHHHHSC
T ss_pred HHHHHhhccCCCcE-EEEECCCCCCHHHHHHHHhc
Confidence 34566666666664 78999999999999999875
No 357
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=96.68 E-value=0.0019 Score=69.85 Aligned_cols=156 Identities=17% Similarity=0.126 Sum_probs=73.7
Q ss_pred HHHHHHhCCEEEEEccCCCCccchhh--hhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhhccccccceeeeeeecC
Q psy2071 70 FMTLLAQNQCIVLVGETGSGKTTQIP--QWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRFED 147 (302)
Q Consensus 70 i~~~i~~g~i~~liG~nGsGKSTll~--~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 147 (302)
|...++.++.+.+.+|+|||||+..- ++-.+.....|.+.+ ..|.+.-+......+...+....+..++.......
T Consensus 935 ~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~~~~kavy--i~P~raLa~q~~~~~~~~f~~~~g~~V~~ltGd~~ 1012 (1724)
T 4f92_B 935 FNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQSSEGRCVY--ITPMEALAEQVYMDWYEKFQDRLNKKVVLLTGETS 1012 (1724)
T ss_dssp HHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHCTTCCEEE--ECSCHHHHHHHHHHHHHHHTTTSCCCEEECCSCHH
T ss_pred HHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhCCCCEEEE--EcChHHHHHHHHHHHHHHhchhcCCEEEEEECCCC
Confidence 34444678889999999999998642 222222222333332 23333222222222222222222222222111000
Q ss_pred ---CCCccccccccCHHHHHHH---hccccCCCCCcEEEEcCCCCCCcchHHHH-HHH---HHHHHHc-CCCcEEEEEEe
Q psy2071 148 ---CSSPKTVLKYMTDGMLLRE---GMSDPMLENYQVILLDEAHERTLATDILM-GVL---KEVIKQR-ADLKLVIMSAT 216 (302)
Q Consensus 148 ---~~~~~~~~~~lS~G~~qr~---~la~al~~~p~lliLDE~~~p~~~lD~~~-~~l---~~ll~~~-~~~~~~ii~~t 216 (302)
.......+-..+.|...-+ ...+..+.+-+++|+||+|.=...-.... ..+ +.+.... ....++.+++|
T Consensus 1013 ~~~~~~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d~rg~~le~il~rl~~i~~~~~~~~riI~lSAT 1092 (1724)
T 4f92_B 1013 TDLKLLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGENGPVLEVICSRMRYISSQIERPIRIVALSSS 1092 (1724)
T ss_dssp HHHHHHHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGSTTHHHHHHHHHHHHHHHHTTSSCCEEEEEESC
T ss_pred cchhhcCCCCEEEECHHHHHHHHhCcccccccceeeEEEeechhhcCCCCCccHHHHHHHHHHHHhhcCCCceEEEEeCC
Confidence 0001122334565543221 12344567889999999985322222222 222 2222222 24468889999
Q ss_pred c-CHHHHHhhcc
Q psy2071 217 L-DAGKFQQYFD 227 (302)
Q Consensus 217 h-d~~~~~~~~d 227 (302)
- +.+++.++.+
T Consensus 1093 l~N~~dla~WL~ 1104 (1724)
T 4f92_B 1093 LSNAKDVAHWLG 1104 (1724)
T ss_dssp BTTHHHHHHHHT
T ss_pred CCCHHHHHHHhC
Confidence 6 7777777654
No 358
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.67 E-value=0.00046 Score=56.76 Aligned_cols=23 Identities=26% Similarity=0.411 Sum_probs=20.6
Q ss_pred EEEEEccCCCCccchhhhhhhcc
Q psy2071 79 CIVLVGETGSGKTTQIPQWCVEY 101 (302)
Q Consensus 79 i~~liG~nGsGKSTll~~i~g~~ 101 (302)
+++|+|++||||||+.+.|+..+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999999998754
No 359
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=96.66 E-value=0.00062 Score=57.67 Aligned_cols=39 Identities=18% Similarity=0.177 Sum_probs=25.5
Q ss_pred hCCE-EEEEccCCCCccchhhhhhhcccccCC-CEEEeecCc
Q psy2071 76 QNQC-IVLVGETGSGKTTQIPQWCVEYSKSVG-AKAVACTQP 115 (302)
Q Consensus 76 ~g~i-~~liG~nGsGKSTll~~i~g~~~~~~G-~~~i~~~~~ 115 (302)
.|.. +.+.|+.|+||||+.-.++..+. ..| .+.+...++
T Consensus 4 ~g~l~I~~~~kgGvGKTt~a~~la~~l~-~~G~~V~v~d~D~ 44 (228)
T 2r8r_A 4 RGRLKVFLGAAPGVGKTYAMLQAAHAQL-RQGVRVMAGVVET 44 (228)
T ss_dssp CCCEEEEEESSTTSSHHHHHHHHHHHHH-HTTCCEEEEECCC
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHHHH-HCCCCEEEEEeCC
Confidence 4564 77899999999999655544433 345 555555544
No 360
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.63 E-value=0.00044 Score=56.38 Aligned_cols=26 Identities=23% Similarity=0.327 Sum_probs=22.3
Q ss_pred hCCEEEEEccCCCCccchhhhhhhcc
Q psy2071 76 QNQCIVLVGETGSGKTTQIPQWCVEY 101 (302)
Q Consensus 76 ~g~i~~liG~nGsGKSTll~~i~g~~ 101 (302)
.+.+++|+|++||||||+.+.++-.+
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 46789999999999999999987543
No 361
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=96.63 E-value=0.011 Score=50.27 Aligned_cols=28 Identities=25% Similarity=0.409 Sum_probs=21.7
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccch
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQ 93 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTl 93 (302)
+.......+..|.-+.+.+|+|||||..
T Consensus 49 ~Q~~~i~~i~~~~~~l~~a~TGsGKT~~ 76 (253)
T 1wrb_A 49 IQKNAIPAILEHRDIMACAQTGSGKTAA 76 (253)
T ss_dssp HHHHHHHHHHTTCCEEEECCTTSSHHHH
T ss_pred HHHHHHHHHhCCCCEEEECCCCChHHHH
Confidence 3444555677788899999999999973
No 362
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=96.62 E-value=0.0019 Score=54.20 Aligned_cols=52 Identities=19% Similarity=0.247 Sum_probs=34.0
Q ss_pred CCCcEEEEcCCCCCCcchH-HHHHHHHHHHHHcCCCcEEEEEEecCHH----------HHHhhccCCCeee
Q psy2071 174 ENYQVILLDEAHERTLATD-ILMGVLKEVIKQRADLKLVIMSATLDAG----------KFQQYFDNAPLMN 233 (302)
Q Consensus 174 ~~p~lliLDE~~~p~~~lD-~~~~~l~~ll~~~~~~~~~ii~~thd~~----------~~~~~~d~~~~l~ 233 (302)
.++++|++||++ -+| .....+.++. +.|+.||.+-.|.+ .+..+||.+.-|+
T Consensus 100 ~~~dvV~IDEaQ----Ff~~~~v~~l~~la----~~gi~Vi~~GLd~DF~~~~F~~~~~Ll~~Ad~v~kl~ 162 (219)
T 3e2i_A 100 TNVDVIGIDEVQ----FFDDEIVSIVEKLS----ADGHRVIVAGLDMDFRGEPFEPMPKLMAVSEQVTKLQ 162 (219)
T ss_dssp TTCSEEEECCGG----GSCTHHHHHHHHHH----HTTCEEEEEEESBCTTSCBCTTHHHHHHHCSEEEEEC
T ss_pred cCCCEEEEechh----cCCHHHHHHHHHHH----HCCCEEEEeecccccccCCCccHHHHHHhcceEEEee
Confidence 588999999953 233 2334455544 24788888887764 3567777776665
No 363
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=96.61 E-value=0.011 Score=64.12 Aligned_cols=57 Identities=21% Similarity=0.347 Sum_probs=34.2
Q ss_pred cCCCCCcEEEEcCCCCCCcchHHHH-HHHHHHH---H-HcCCCcEEEEEEec-CHHHHHhhcc
Q psy2071 171 PMLENYQVILLDEAHERTLATDILM-GVLKEVI---K-QRADLKLVIMSATL-DAGKFQQYFD 227 (302)
Q Consensus 171 al~~~p~lliLDE~~~p~~~lD~~~-~~l~~ll---~-~~~~~~~~ii~~th-d~~~~~~~~d 227 (302)
.++.+.+++|+||+|.=...--..+ ..+..++ . ......++.++||- +.++++++.+
T Consensus 203 ~~l~~v~~vIiDEvH~l~d~RG~~lE~~l~rl~~~~~~~~~~~riI~LSATl~N~~dvA~wL~ 265 (1724)
T 4f92_B 203 TYTQLVRLIILDEIHLLHDDRGPVLEALVARAIRNIEMTQEDVRLIGLSATLPNYEDVATFLR 265 (1724)
T ss_dssp HHHTTEEEEEETTGGGGGSTTHHHHHHHHHHHHHHHHHHTCCCEEEEEECSCTTHHHHHHHTT
T ss_pred hhhcCcCEEEEecchhcCCccHHHHHHHHHHHHHHHHhCCCCCcEEEEecccCCHHHHHHHhC
Confidence 3567899999999884321111222 2222222 2 22345788999996 7778877764
No 364
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.60 E-value=0.00056 Score=59.00 Aligned_cols=23 Identities=35% Similarity=0.264 Sum_probs=20.6
Q ss_pred EEEEEccCCCCccchhhhhhhcc
Q psy2071 79 CIVLVGETGSGKTTQIPQWCVEY 101 (302)
Q Consensus 79 i~~liG~nGsGKSTll~~i~g~~ 101 (302)
+++|+|||||||||+-+.|+..+
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 68999999999999999988754
No 365
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.60 E-value=0.00037 Score=59.45 Aligned_cols=26 Identities=15% Similarity=0.266 Sum_probs=21.8
Q ss_pred hCCEEEEEccCCCCccchhhhhhhcc
Q psy2071 76 QNQCIVLVGETGSGKTTQIPQWCVEY 101 (302)
Q Consensus 76 ~g~i~~liG~nGsGKSTll~~i~g~~ 101 (302)
..-+++|.||+||||||+.+.|+..+
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 44589999999999999999998544
No 366
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.59 E-value=0.00059 Score=54.91 Aligned_cols=22 Identities=32% Similarity=0.519 Sum_probs=19.7
Q ss_pred CEEEEEccCCCCccchhhhhhh
Q psy2071 78 QCIVLVGETGSGKTTQIPQWCV 99 (302)
Q Consensus 78 ~i~~liG~nGsGKSTll~~i~g 99 (302)
.+++|.|++||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 3689999999999999998875
No 367
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=96.59 E-value=0.014 Score=51.56 Aligned_cols=45 Identities=13% Similarity=0.285 Sum_probs=31.3
Q ss_pred HHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCC-CEEEeecC
Q psy2071 70 FMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVG-AKAVACTQ 114 (302)
Q Consensus 70 i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G-~~~i~~~~ 114 (302)
+......+..+.|.||+|+|||++.+.+........+ .+.++|..
T Consensus 18 ~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~ 63 (304)
T 1ojl_A 18 IAMVAPSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAA 63 (304)
T ss_dssp HHHHCSTTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSS
T ss_pred HHHHhCCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCC
Confidence 3333456778999999999999999998775432222 45666654
No 368
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.58 E-value=0.00065 Score=55.13 Aligned_cols=26 Identities=31% Similarity=0.272 Sum_probs=21.7
Q ss_pred hCCEEEEEccCCCCccchhhhhhhcc
Q psy2071 76 QNQCIVLVGETGSGKTTQIPQWCVEY 101 (302)
Q Consensus 76 ~g~i~~liG~nGsGKSTll~~i~g~~ 101 (302)
.+.+++|+|++||||||+.+.++-.+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 36789999999999999999887543
No 369
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.57 E-value=0.00069 Score=55.37 Aligned_cols=28 Identities=39% Similarity=0.580 Sum_probs=24.0
Q ss_pred HHhCCEEEEEccCCCCccchhhhhhhcc
Q psy2071 74 LAQNQCIVLVGETGSGKTTQIPQWCVEY 101 (302)
Q Consensus 74 i~~g~i~~liG~nGsGKSTll~~i~g~~ 101 (302)
..++.+++|+|+.||||||+.+.|+-.+
T Consensus 6 m~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 6 LKKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp HTTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CcCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578899999999999999999887543
No 370
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.57 E-value=0.00065 Score=55.94 Aligned_cols=26 Identities=35% Similarity=0.286 Sum_probs=23.0
Q ss_pred hCCEEEEEccCCCCccchhhhhhhcc
Q psy2071 76 QNQCIVLVGETGSGKTTQIPQWCVEY 101 (302)
Q Consensus 76 ~g~i~~liG~nGsGKSTll~~i~g~~ 101 (302)
.|.+++|+|+.||||||+.+.|.-.+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57889999999999999999987654
No 371
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.57 E-value=0.00057 Score=55.32 Aligned_cols=26 Identities=31% Similarity=0.316 Sum_probs=22.4
Q ss_pred HhCCEEEEEccCCCCccchhhhhhhc
Q psy2071 75 AQNQCIVLVGETGSGKTTQIPQWCVE 100 (302)
Q Consensus 75 ~~g~i~~liG~nGsGKSTll~~i~g~ 100 (302)
..+.+++|+|++||||||+.+.++-.
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 35778999999999999999988743
No 372
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.56 E-value=0.00062 Score=56.95 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=20.8
Q ss_pred CCEEEEEccCCCCccchhhhhhh
Q psy2071 77 NQCIVLVGETGSGKTTQIPQWCV 99 (302)
Q Consensus 77 g~i~~liG~nGsGKSTll~~i~g 99 (302)
+-+++|+|++||||||+.+.|..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999876
No 373
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=96.55 E-value=0.00062 Score=59.16 Aligned_cols=23 Identities=30% Similarity=0.303 Sum_probs=20.9
Q ss_pred EEEEEccCCCCccchhhhhhhcc
Q psy2071 79 CIVLVGETGSGKTTQIPQWCVEY 101 (302)
Q Consensus 79 i~~liG~nGsGKSTll~~i~g~~ 101 (302)
.++|+|++|||||||++.++|..
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~ 27 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLR 27 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999998864
No 374
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=96.52 E-value=0.00023 Score=68.00 Aligned_cols=33 Identities=24% Similarity=0.300 Sum_probs=27.4
Q ss_pred HHHHHHHHHhCCEEEEEccCCCCccchhhhhhhc
Q psy2071 67 RTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVE 100 (302)
Q Consensus 67 ~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~ 100 (302)
.+++.+.+.+| +.+|+|+|||||||++.+|.++
T Consensus 51 ~~~~~l~f~~g-~n~i~G~NGaGKS~lleAl~~l 83 (517)
T 4ad8_A 51 ITQLELELGGG-FCAFTGETGAGKSIIVDALGLL 83 (517)
T ss_dssp BSCEEEECCCS-EEEEEESHHHHHHHHTHHHHHH
T ss_pred eeeEEEecCCC-eEEEEcCCCCCHHHHHHHHHHH
Confidence 34556667777 9999999999999999999665
No 375
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=96.51 E-value=0.0012 Score=59.85 Aligned_cols=25 Identities=28% Similarity=0.364 Sum_probs=21.5
Q ss_pred CCEEEEEccCCCCccchhhhhhhcc
Q psy2071 77 NQCIVLVGETGSGKTTQIPQWCVEY 101 (302)
Q Consensus 77 g~i~~liG~nGsGKSTll~~i~g~~ 101 (302)
..-+.|.||.|+||||+.+.++...
T Consensus 84 ~~~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp CCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CceEEEECCCCCcHHHHHHHHHHHh
Confidence 3458999999999999999998765
No 376
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.51 E-value=0.00074 Score=59.44 Aligned_cols=35 Identities=23% Similarity=0.231 Sum_probs=26.3
Q ss_pred hCCEEEEEccCCCCccchhhhhhhcccccCCCEEEee
Q psy2071 76 QNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVAC 112 (302)
Q Consensus 76 ~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~ 112 (302)
.+.+++|.|++||||||+.+.++..+. .|...+.+
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~~--~~~~~Is~ 66 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEETQ--GNVIVIDN 66 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHTT--TCCEEECT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC--CCeEEEec
Confidence 356899999999999999999875432 24555554
No 377
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=96.50 E-value=0.0034 Score=59.29 Aligned_cols=42 Identities=17% Similarity=0.193 Sum_probs=26.7
Q ss_pred cCCCCCcEEEEcCCCCCCcchHHHHHHHHHHHHHc-CCCcEEEEEEecC
Q psy2071 171 PMLENYQVILLDEAHERTLATDILMGVLKEVIKQR-ADLKLVIMSATLD 218 (302)
Q Consensus 171 al~~~p~lliLDE~~~p~~~lD~~~~~l~~ll~~~-~~~~~~ii~~thd 218 (302)
..+.+.++||+||+|.-.. ..+..++... ....+..+++|..
T Consensus 221 ~~~~~~~liIiDE~H~~~~------~~~~~il~~~~~~~~~l~lSATp~ 263 (510)
T 2oca_A 221 EWFSQFGMMMNDECHLATG------KSISSIISGLNNCMFKFGLSGSLR 263 (510)
T ss_dssp GGGGGEEEEEEETGGGCCH------HHHHHHGGGCTTCCEEEEEESCGG
T ss_pred hhhhcCCEEEEECCcCCCc------ccHHHHHHhcccCcEEEEEEeCCC
Confidence 4567789999999886443 2233444444 3335677788873
No 378
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=96.50 E-value=0.0011 Score=65.23 Aligned_cols=30 Identities=27% Similarity=0.346 Sum_probs=23.0
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhh
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIP 95 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~ 95 (302)
+...+...+-.|.-+.|.+|+|+|||...-
T Consensus 11 ~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~ 40 (699)
T 4gl2_A 11 YQMEVAQPALEGKNIIICLPTGCGKTRVAV 40 (699)
T ss_dssp HHHHHHHHHHSSCCEEECCCTTSCHHHHHH
T ss_pred HHHHHHHHHHhCCCEEEEcCCCCcHHHHHH
Confidence 445555566678889999999999998643
No 379
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=96.50 E-value=0.0018 Score=54.97 Aligned_cols=52 Identities=17% Similarity=0.176 Sum_probs=33.2
Q ss_pred CCCcEEEEcCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEEEecC----------HHHHHhhccCCCeee
Q psy2071 174 ENYQVILLDEAHERTLATDILMGVLKEVIKQRADLKLVIMSATLD----------AGKFQQYFDNAPLMN 233 (302)
Q Consensus 174 ~~p~lliLDE~~~p~~~lD~~~~~l~~ll~~~~~~~~~ii~~thd----------~~~~~~~~d~~~~l~ 233 (302)
.++++|++||++--+ + +.+++ +++.. .++.||.+-++ ...+..+||.|.-|+
T Consensus 89 ~~~dvViIDEaQF~~---~-v~el~-~~l~~---~gi~VI~~GL~~DF~~~~F~~~~~Ll~~AD~Vtelk 150 (234)
T 2orv_A 89 LGVAVIGIDEGQFFP---D-IVEFC-EAMAN---AGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKLT 150 (234)
T ss_dssp TTCSEEEESSGGGCT---T-HHHHH-HHHHH---TTCEEEEECCSBCTTSSBCTTGGGGGGGCSEEEECC
T ss_pred ccCCEEEEEchhhhh---h-HHHHH-HHHHh---CCCEEEEEecccccccCCcccHHHHHHhcccEEeee
Confidence 679999999954322 2 22222 23222 47889988888 345667888777665
No 380
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=96.49 E-value=0.0018 Score=62.05 Aligned_cols=44 Identities=11% Similarity=0.206 Sum_probs=29.7
Q ss_pred cEEEEcCCCCCCcch-HHHHHHHHHHHHHcCCCcEEEEEEecCHH
Q psy2071 177 QVILLDEAHERTLAT-DILMGVLKEVIKQRADLKLVIMSATLDAG 220 (302)
Q Consensus 177 ~lliLDE~~~p~~~l-D~~~~~l~~ll~~~~~~~~~ii~~thd~~ 220 (302)
=+||+||+|.=.... +.....+.++.+.-+..|+.++++|....
T Consensus 345 ivvVIDE~~~L~~~~~~~~~~~L~~Iar~GRa~GIhLIlaTQRPs 389 (574)
T 2iut_A 345 IVVVVDEFADMMMIVGKKVEELIARIAQKARAAGIHLILATQRPS 389 (574)
T ss_dssp EEEEESCCTTHHHHTCHHHHHHHHHHHHHCTTTTEEEEEEESCCC
T ss_pred EEEEEeCHHHHhhhhhHHHHHHHHHHHHHHhhCCeEEEEEecCcc
Confidence 379999965321111 23336677788777788999999998653
No 381
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=96.49 E-value=0.013 Score=58.75 Aligned_cols=148 Identities=13% Similarity=0.092 Sum_probs=69.6
Q ss_pred HHHHHHHHHhCCEEEEEccCCCCccchhhhhh--hccccc---CCCEEEeecCchhhhHHHHHH---Hhhhhhccccccc
Q psy2071 67 RTEFMTLLAQNQCIVLVGETGSGKTTQIPQWC--VEYSKS---VGAKAVACTQPRRVAAMSVAQ---RVSEEMDCQLGQE 138 (302)
Q Consensus 67 ~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~--g~~~~~---~G~~~i~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 138 (302)
.......+-.|.-+.+.+|+|||||...-..+ .+.... .+.+.|.. |.+.-+..... ......+..+...
T Consensus 253 Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~--Pt~~L~~Q~~~~~~~~~~~~~~~v~~~ 330 (797)
T 4a2q_A 253 QIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLA--TKVPVYEQQKNVFKHHFERQGYSVQGI 330 (797)
T ss_dssp HHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEEC--SSHHHHHHHHHHHHHHHGGGTCCEEEE
T ss_pred HHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEe--CCHHHHHHHHHHHHHhcccCCceEEEE
Confidence 34445566678889999999999997532222 111111 34444432 32211111111 1111111111111
Q ss_pred eeeeeeecC--CCCccccccccCHHHHHHHhcccc--CCCCCcEEEEcCCCCCCcchHHHHHHHHHHHHH-----cCCCc
Q psy2071 139 VGYSIRFED--CSSPKTVLKYMTDGMLLREGMSDP--MLENYQVILLDEAHERTLATDILMGVLKEVIKQ-----RADLK 209 (302)
Q Consensus 139 v~~~~~~~~--~~~~~~~~~~lS~G~~qr~~la~a--l~~~p~lliLDE~~~p~~~lD~~~~~l~~ll~~-----~~~~~ 209 (302)
.|-...... .......+-..|.|...+..-... .+.+.++||+||+|.-...- ....++..++.. .....
T Consensus 331 ~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~-~~~~i~~~~~~~~~~~~~~~~~ 409 (797)
T 4a2q_A 331 SGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNH-PYNVLMTRYLEQKFNSASQLPQ 409 (797)
T ss_dssp CCC-----CHHHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTTS-HHHHHHHHHHHHHHTTCCCCCE
T ss_pred eCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCCc-cHHHHHHHHHHHhhccCCCCCe
Confidence 110000000 000112344567777665443332 36678999999998644432 233444444433 22245
Q ss_pred EEEEEEec
Q psy2071 210 LVIMSATL 217 (302)
Q Consensus 210 ~~ii~~th 217 (302)
+..+++|.
T Consensus 410 ~l~lSATp 417 (797)
T 4a2q_A 410 ILGLTASV 417 (797)
T ss_dssp EEEEESCC
T ss_pred EEEEcCCc
Confidence 78888987
No 382
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.48 E-value=0.00061 Score=54.93 Aligned_cols=23 Identities=35% Similarity=0.475 Sum_probs=20.4
Q ss_pred EEEEEccCCCCccchhhhhhhcc
Q psy2071 79 CIVLVGETGSGKTTQIPQWCVEY 101 (302)
Q Consensus 79 i~~liG~nGsGKSTll~~i~g~~ 101 (302)
+++|+|++||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58999999999999999987654
No 383
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.48 E-value=0.003 Score=67.68 Aligned_cols=38 Identities=24% Similarity=0.186 Sum_probs=31.0
Q ss_pred HHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEe
Q psy2071 74 LAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVA 111 (302)
Q Consensus 74 i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~ 111 (302)
+.+|+++.|.|++|+|||||..+++.......+.+.+.
T Consensus 729 l~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~Vlyi 766 (1706)
T 3cmw_A 729 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFI 766 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred cCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEE
Confidence 67999999999999999999999887765544555543
No 384
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.46 E-value=0.001 Score=54.65 Aligned_cols=31 Identities=26% Similarity=0.230 Sum_probs=24.8
Q ss_pred CCEEEEEccCCCCccchhhhhhhcccccCCCEEEee
Q psy2071 77 NQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVAC 112 (302)
Q Consensus 77 g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~ 112 (302)
..+++|+|++||||||+.+.|+.. |...++.
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~-----g~~~id~ 38 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW-----GYPVLDL 38 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT-----TCCEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC-----CCEEEcc
Confidence 457999999999999999998764 6555554
No 385
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.45 E-value=0.00094 Score=53.94 Aligned_cols=25 Identities=24% Similarity=0.258 Sum_probs=17.3
Q ss_pred hCCEEEEEccCCCCccchhhhhhhc
Q psy2071 76 QNQCIVLVGETGSGKTTQIPQWCVE 100 (302)
Q Consensus 76 ~g~i~~liG~nGsGKSTll~~i~g~ 100 (302)
++.+++|.|++||||||+.+.++-.
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~ 28 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHER 28 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 4678999999999999999988643
No 386
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.44 E-value=0.00076 Score=55.75 Aligned_cols=27 Identities=26% Similarity=0.222 Sum_probs=23.2
Q ss_pred hCCEEEEEccCCCCccchhhhhhhccc
Q psy2071 76 QNQCIVLVGETGSGKTTQIPQWCVEYS 102 (302)
Q Consensus 76 ~g~i~~liG~nGsGKSTll~~i~g~~~ 102 (302)
+|.+++|.|+.||||||+.+.|+-.+.
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 366899999999999999999977554
No 387
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.44 E-value=0.00089 Score=55.48 Aligned_cols=27 Identities=30% Similarity=0.272 Sum_probs=23.2
Q ss_pred HhCCEEEEEccCCCCccchhhhhhhcc
Q psy2071 75 AQNQCIVLVGETGSGKTTQIPQWCVEY 101 (302)
Q Consensus 75 ~~g~i~~liG~nGsGKSTll~~i~g~~ 101 (302)
..|.+++|.|+.||||||+.+.|.-.+
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 357899999999999999999987543
No 388
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=96.41 E-value=0.0026 Score=60.17 Aligned_cols=27 Identities=30% Similarity=0.318 Sum_probs=22.5
Q ss_pred HhCCEEEEEccCCCCccchhhhhhhcc
Q psy2071 75 AQNQCIVLVGETGSGKTTQIPQWCVEY 101 (302)
Q Consensus 75 ~~g~i~~liG~nGsGKSTll~~i~g~~ 101 (302)
....-+.|.||+|+|||++.+.++...
T Consensus 236 ~~~~~vLL~GppGtGKT~lAraia~~~ 262 (489)
T 3hu3_A 236 KPPRGILLYGPPGTGKTLIARAVANET 262 (489)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CCCCcEEEECcCCCCHHHHHHHHHHHh
Confidence 344569999999999999999997653
No 389
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=96.41 E-value=0.015 Score=59.35 Aligned_cols=150 Identities=13% Similarity=0.115 Sum_probs=71.0
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhh--hccccc---CCCEEEeecCchhhhHHHHHHHh---hhhhcccccc
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWC--VEYSKS---VGAKAVACTQPRRVAAMSVAQRV---SEEMDCQLGQ 137 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~--g~~~~~---~G~~~i~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 137 (302)
+.......+-.|.-+.|.+|+|||||...-..+ .+.... .+.+.|.. |.+.-+......+ ....+..+..
T Consensus 252 ~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~--Pt~~L~~Q~~~~~~~~~~~~~~~v~~ 329 (936)
T 4a2w_A 252 YQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLA--TKVPVYEQQKNVFKHHFERQGYSVQG 329 (936)
T ss_dssp HHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEEC--SSHHHHHHHHHHHHHHHHTTTCCEEE
T ss_pred HHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEe--CCHHHHHHHHHHHHHHhcccCceEEE
Confidence 344455566678889999999999997532222 111111 23444432 3221111111111 1111111111
Q ss_pred ceeeeeeecCC--CCccccccccCHHHHHHHhcccc--CCCCCcEEEEcCCCCCCcchHHHHHHHHHHHHH-----cCCC
Q psy2071 138 EVGYSIRFEDC--SSPKTVLKYMTDGMLLREGMSDP--MLENYQVILLDEAHERTLATDILMGVLKEVIKQ-----RADL 208 (302)
Q Consensus 138 ~v~~~~~~~~~--~~~~~~~~~lS~G~~qr~~la~a--l~~~p~lliLDE~~~p~~~lD~~~~~l~~ll~~-----~~~~ 208 (302)
..|-....... ......+-..|.|...+..-... .+.+.++||+||+|.-... .+....+..++.. ....
T Consensus 330 ~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~-~~~~~i~~~~~~~~~~~~~~~~ 408 (936)
T 4a2w_A 330 ISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGN-HPYNVLMTRYLEQKFNSASQLP 408 (936)
T ss_dssp ECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTT-CHHHHHHHHHHHHHHTTCSCCC
T ss_pred EECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCC-ccHHHHHHHHHHHhhccCCCcC
Confidence 11100000000 00112344577787766544333 3667899999999864433 2333444444443 2224
Q ss_pred cEEEEEEecC
Q psy2071 209 KLVIMSATLD 218 (302)
Q Consensus 209 ~~~ii~~thd 218 (302)
.+..+++|..
T Consensus 409 ~~l~LSATp~ 418 (936)
T 4a2w_A 409 QILGLTASVG 418 (936)
T ss_dssp EEEEEESCCC
T ss_pred eEEEecCCcc
Confidence 5888899983
No 390
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.41 E-value=0.00086 Score=54.48 Aligned_cols=24 Identities=21% Similarity=0.228 Sum_probs=20.9
Q ss_pred EEEEEccCCCCccchhhhhhhccc
Q psy2071 79 CIVLVGETGSGKTTQIPQWCVEYS 102 (302)
Q Consensus 79 i~~liG~nGsGKSTll~~i~g~~~ 102 (302)
+++|.|+.||||||+.+.|+-.+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999876554
No 391
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.40 E-value=0.00091 Score=54.67 Aligned_cols=23 Identities=39% Similarity=0.440 Sum_probs=20.5
Q ss_pred EEEEEccCCCCccchhhhhhhcc
Q psy2071 79 CIVLVGETGSGKTTQIPQWCVEY 101 (302)
Q Consensus 79 i~~liG~nGsGKSTll~~i~g~~ 101 (302)
+++|.|+.||||||+.+.+.-.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999987655
No 392
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=96.38 E-value=0.0012 Score=58.08 Aligned_cols=35 Identities=14% Similarity=0.294 Sum_probs=26.0
Q ss_pred HHHHHHHHHhCC--EEEEEccCCCCccchhhhhhhcc
Q psy2071 67 RTEFMTLLAQNQ--CIVLVGETGSGKTTQIPQWCVEY 101 (302)
Q Consensus 67 ~~~i~~~i~~g~--i~~liG~nGsGKSTll~~i~g~~ 101 (302)
.+.+...+..|. .+.|.||.|+||||+.+.++..+
T Consensus 26 ~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l 62 (319)
T 2chq_A 26 IQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDL 62 (319)
T ss_dssp HHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHh
Confidence 344444555554 48999999999999999887654
No 393
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.38 E-value=0.00089 Score=54.50 Aligned_cols=24 Identities=25% Similarity=0.418 Sum_probs=20.7
Q ss_pred CCEEEEEccCCCCccchhhhhhhc
Q psy2071 77 NQCIVLVGETGSGKTTQIPQWCVE 100 (302)
Q Consensus 77 g~i~~liG~nGsGKSTll~~i~g~ 100 (302)
+.+++|.|++||||||+.+.++-.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999887653
No 394
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=96.38 E-value=0.013 Score=60.86 Aligned_cols=30 Identities=30% Similarity=0.437 Sum_probs=23.3
Q ss_pred hHHHHHHHHHHHhCCEEEEEccCCCCccch
Q psy2071 64 FEYRTEFMTLLAQNQCIVLVGETGSGKTTQ 93 (302)
Q Consensus 64 ~~~~~~i~~~i~~g~i~~liG~nGsGKSTl 93 (302)
+.+.......+-.|+-+.+.+|+|||||+.
T Consensus 80 t~iQ~~ai~~il~g~dvlv~ApTGSGKTl~ 109 (1104)
T 4ddu_A 80 TGYQRLWAKRIVQGKSFTMVAPTGVGKTTF 109 (1104)
T ss_dssp CHHHHHHHHHHTTTCCEEECCSTTCCHHHH
T ss_pred CHHHHHHHHHHHcCCCEEEEeCCCCcHHHH
Confidence 344555566677788899999999999984
No 395
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=96.38 E-value=0.0043 Score=59.17 Aligned_cols=52 Identities=21% Similarity=0.167 Sum_probs=34.2
Q ss_pred CCCcEEEEcCCCCCCc-c--hHHHHHHHHHHHHHcCCCcEEEEEEecCHHHHHhh
Q psy2071 174 ENYQVILLDEAHERTL-A--TDILMGVLKEVIKQRADLKLVIMSATLDAGKFQQY 225 (302)
Q Consensus 174 ~~p~lliLDE~~~p~~-~--lD~~~~~l~~ll~~~~~~~~~ii~~thd~~~~~~~ 225 (302)
.+.+++++||+|.-.. + ..+....+..+........++.+++|........+
T Consensus 138 ~~~~~vViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i 192 (523)
T 1oyw_A 138 WNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDI 192 (523)
T ss_dssp SCEEEEEESSGGGGCTTSSCCCHHHHGGGGHHHHCTTSCEEEEESCCCHHHHHHH
T ss_pred CCCCEEEEeCccccCcCCCccHHHHHHHHHHHHhCCCCCEEEEeCCCCHHHHHHH
Confidence 6788999999986542 2 22333445555555556678899999887544433
No 396
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.37 E-value=0.00092 Score=55.46 Aligned_cols=27 Identities=30% Similarity=0.330 Sum_probs=23.6
Q ss_pred HhCCEEEEEccCCCCccchhhhhhhcc
Q psy2071 75 AQNQCIVLVGETGSGKTTQIPQWCVEY 101 (302)
Q Consensus 75 ~~g~i~~liG~nGsGKSTll~~i~g~~ 101 (302)
.+|.+++|.|+.||||||+.+.|+-.+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 468899999999999999999987644
No 397
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=96.37 E-value=0.00089 Score=54.40 Aligned_cols=23 Identities=26% Similarity=0.463 Sum_probs=20.9
Q ss_pred EEEEEccCCCCccchhhhhhhcc
Q psy2071 79 CIVLVGETGSGKTTQIPQWCVEY 101 (302)
Q Consensus 79 i~~liG~nGsGKSTll~~i~g~~ 101 (302)
.++|+|++|||||||++.+++..
T Consensus 50 ~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 50 SIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999998754
No 398
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=96.36 E-value=0.0043 Score=64.18 Aligned_cols=34 Identities=15% Similarity=0.232 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHhCCEEEEEccCCCCccc-hhhhhh
Q psy2071 65 EYRTEFMTLLAQNQCIVLVGETGSGKTT-QIPQWC 98 (302)
Q Consensus 65 ~~~~~i~~~i~~g~i~~liG~nGsGKST-ll~~i~ 98 (302)
.+.......+-.|+-+.+.+|+|||||+ +++++.
T Consensus 59 ~iQ~~ai~~il~g~dvlv~apTGSGKTl~~lp~l~ 93 (1054)
T 1gku_B 59 AIQKMWAKRILRKESFAATAPTGVGKTSFGLAMSL 93 (1054)
T ss_dssp HHHHHHHHHHHTTCCEECCCCBTSCSHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHH
Confidence 5666667777789999999999999995 334433
No 399
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=96.36 E-value=0.00092 Score=60.98 Aligned_cols=22 Identities=27% Similarity=0.522 Sum_probs=20.2
Q ss_pred CEEEEEccCCCCccchhhhhhh
Q psy2071 78 QCIVLVGETGSGKTTQIPQWCV 99 (302)
Q Consensus 78 ~i~~liG~nGsGKSTll~~i~g 99 (302)
.+.+|+|+|||||||+|.+|+-
T Consensus 26 gl~vi~G~NGaGKT~ileAI~~ 47 (371)
T 3auy_A 26 GIVAIIGENGSGKSSIFEAVFF 47 (371)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999874
No 400
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=96.33 E-value=0.0084 Score=58.07 Aligned_cols=53 Identities=21% Similarity=0.400 Sum_probs=33.2
Q ss_pred CCCChhhHHHHHhhcCCCh-hHHHHHHHHHHHhCCEEEEEccCCCCccc--hhhhh
Q psy2071 45 YPYTPRYHELHRKRITLPV-FEYRTEFMTLLAQNQCIVLVGETGSGKTT--QIPQW 97 (302)
Q Consensus 45 ~~~~~~~~~l~~~r~~lp~-~~~~~~i~~~i~~g~i~~liG~nGsGKST--ll~~i 97 (302)
.+......+.++....+.. ..+...+...+-.|+-+.+++|+|+|||. +++++
T Consensus 26 ~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal 81 (591)
T 2v1x_A 26 FPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPAL 81 (591)
T ss_dssp STTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHH
Confidence 4444555555554333321 12345566667778889999999999998 45554
No 401
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.31 E-value=0.00089 Score=60.89 Aligned_cols=24 Identities=33% Similarity=0.480 Sum_probs=20.4
Q ss_pred EEEEccCCCCccchhhhhhhcccc
Q psy2071 80 IVLVGETGSGKTTQIPQWCVEYSK 103 (302)
Q Consensus 80 ~~liG~nGsGKSTll~~i~g~~~~ 103 (302)
++|+|++|+|||||++.|.+....
T Consensus 40 I~vvG~~g~GKSTLln~L~~~~~~ 63 (361)
T 2qag_A 40 LMVVGESGLGKSTLINSLFLTDLY 63 (361)
T ss_dssp EEECCCTTSCHHHHHHHHTTCCC-
T ss_pred EEEEcCCCCCHHHHHHHHhCCCCC
Confidence 699999999999999998776443
No 402
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=96.30 E-value=0.001 Score=52.33 Aligned_cols=22 Identities=32% Similarity=0.673 Sum_probs=19.6
Q ss_pred EEEEEccCCCCccchhhhhhhc
Q psy2071 79 CIVLVGETGSGKTTQIPQWCVE 100 (302)
Q Consensus 79 i~~liG~nGsGKSTll~~i~g~ 100 (302)
-++|+|+.|+|||||++.+++.
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 3789999999999999999864
No 403
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=96.30 E-value=0.001 Score=52.02 Aligned_cols=22 Identities=32% Similarity=0.412 Sum_probs=19.7
Q ss_pred EEEEEccCCCCccchhhhhhhc
Q psy2071 79 CIVLVGETGSGKTTQIPQWCVE 100 (302)
Q Consensus 79 i~~liG~nGsGKSTll~~i~g~ 100 (302)
.++++|+.|+|||||++.+++.
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3789999999999999999864
No 404
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.29 E-value=0.0012 Score=55.65 Aligned_cols=26 Identities=31% Similarity=0.354 Sum_probs=21.4
Q ss_pred HhCCEEEEEccCCCCccchhhhhhhc
Q psy2071 75 AQNQCIVLVGETGSGKTTQIPQWCVE 100 (302)
Q Consensus 75 ~~g~i~~liG~nGsGKSTll~~i~g~ 100 (302)
..+.+++|+|+.||||||+.+.|+-.
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~ 30 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTH 30 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHH
Confidence 45678999999999999999988753
No 405
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=96.29 E-value=0.0011 Score=51.95 Aligned_cols=23 Identities=22% Similarity=0.359 Sum_probs=20.1
Q ss_pred EEEEEccCCCCccchhhhhhhcc
Q psy2071 79 CIVLVGETGSGKTTQIPQWCVEY 101 (302)
Q Consensus 79 i~~liG~nGsGKSTll~~i~g~~ 101 (302)
.++++|+.|+|||||++.+++..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998753
No 406
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=96.28 E-value=0.001 Score=52.48 Aligned_cols=22 Identities=23% Similarity=0.354 Sum_probs=19.5
Q ss_pred EEEEEccCCCCccchhhhhhhc
Q psy2071 79 CIVLVGETGSGKTTQIPQWCVE 100 (302)
Q Consensus 79 i~~liG~nGsGKSTll~~i~g~ 100 (302)
-++|+|+.|+|||||++.+++.
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHcCc
Confidence 3789999999999999998764
No 407
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=96.28 E-value=0.0072 Score=54.09 Aligned_cols=36 Identities=8% Similarity=0.075 Sum_probs=29.0
Q ss_pred HHHHHHHHHhCCE---EEEEccCCCCccchhhhhhhccc
Q psy2071 67 RTEFMTLLAQNQC---IVLVGETGSGKTTQIPQWCVEYS 102 (302)
Q Consensus 67 ~~~i~~~i~~g~i---~~liG~nGsGKSTll~~i~g~~~ 102 (302)
.+.+...+..|.+ +.+.||.|+||||+.+.++..+.
T Consensus 11 ~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~ 49 (334)
T 1a5t_A 11 FEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLL 49 (334)
T ss_dssp HHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHh
Confidence 4556677888774 89999999999999998876543
No 408
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.28 E-value=0.0042 Score=62.80 Aligned_cols=36 Identities=19% Similarity=0.246 Sum_probs=26.6
Q ss_pred CEEEEEccCCCCccchhhhhhhcccccCC-CEEEeec
Q psy2071 78 QCIVLVGETGSGKTTQIPQWCVEYSKSVG-AKAVACT 113 (302)
Q Consensus 78 ~i~~liG~nGsGKSTll~~i~g~~~~~~G-~~~i~~~ 113 (302)
..+.|.||+|+|||++.+.++.......+ .+.+++.
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~ 625 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMT 625 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEech
Confidence 47899999999999999999887654332 3444443
No 409
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=96.26 E-value=0.016 Score=53.93 Aligned_cols=46 Identities=22% Similarity=0.251 Sum_probs=33.8
Q ss_pred CCEEEEEccCCCCccchhhhhhhcccccCC-CEEEeecCchhhhHHH
Q psy2071 77 NQCIVLVGETGSGKTTQIPQWCVEYSKSVG-AKAVACTQPRRVAAMS 122 (302)
Q Consensus 77 g~i~~liG~nGsGKSTll~~i~g~~~~~~G-~~~i~~~~~~~~~~~~ 122 (302)
..+++++|++|+||||+.-.|+..+.-..| .+.+...++.+.+...
T Consensus 100 ~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ 146 (433)
T 2xxa_A 100 PAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIK 146 (433)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHH
Confidence 358999999999999999888876654424 6777666766655443
No 410
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.25 E-value=0.015 Score=51.72 Aligned_cols=41 Identities=15% Similarity=0.063 Sum_probs=30.0
Q ss_pred HhCCEEEEEccCCCCccchhhhhhhcccccC--------CCEEEeecCc
Q psy2071 75 AQNQCIVLVGETGSGKTTQIPQWCVEYSKSV--------GAKAVACTQP 115 (302)
Q Consensus 75 ~~g~i~~liG~nGsGKSTll~~i~g~~~~~~--------G~~~i~~~~~ 115 (302)
..+..+.|.||+|+|||++++.++..+.... ..+.++|...
T Consensus 43 ~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~ 91 (318)
T 3te6_A 43 SQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALEL 91 (318)
T ss_dssp TCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCC
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEecccc
Confidence 3566899999999999999999987664221 2456677553
No 411
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=96.25 E-value=0.0012 Score=57.66 Aligned_cols=23 Identities=30% Similarity=0.328 Sum_probs=20.8
Q ss_pred EEEEEccCCCCccchhhhhhhcc
Q psy2071 79 CIVLVGETGSGKTTQIPQWCVEY 101 (302)
Q Consensus 79 i~~liG~nGsGKSTll~~i~g~~ 101 (302)
.++|+|++|||||||++.++|..
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999853
No 412
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=96.24 E-value=0.0011 Score=52.60 Aligned_cols=22 Identities=32% Similarity=0.566 Sum_probs=19.7
Q ss_pred EEEEEccCCCCccchhhhhhhc
Q psy2071 79 CIVLVGETGSGKTTQIPQWCVE 100 (302)
Q Consensus 79 i~~liG~nGsGKSTll~~i~g~ 100 (302)
-++|+|+.|+|||||++.+++.
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCccHHHHHHHHhcC
Confidence 3789999999999999999864
No 413
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.23 E-value=0.0014 Score=54.98 Aligned_cols=26 Identities=35% Similarity=0.607 Sum_probs=22.3
Q ss_pred hCCEEEEEccCCCCccchhhhhhhcc
Q psy2071 76 QNQCIVLVGETGSGKTTQIPQWCVEY 101 (302)
Q Consensus 76 ~g~i~~liG~nGsGKSTll~~i~g~~ 101 (302)
.+-+++|+|+.||||||+.+.|+-.+
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 46789999999999999999887644
No 414
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.23 E-value=0.0012 Score=52.13 Aligned_cols=22 Identities=18% Similarity=0.434 Sum_probs=19.6
Q ss_pred EEEEEccCCCCccchhhhhhhc
Q psy2071 79 CIVLVGETGSGKTTQIPQWCVE 100 (302)
Q Consensus 79 i~~liG~nGsGKSTll~~i~g~ 100 (302)
-++++|+.|+|||||++.+++.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999873
No 415
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=96.23 E-value=0.0011 Score=53.59 Aligned_cols=22 Identities=41% Similarity=0.534 Sum_probs=20.0
Q ss_pred EEEEEccCCCCccchhhhhhhc
Q psy2071 79 CIVLVGETGSGKTTQIPQWCVE 100 (302)
Q Consensus 79 i~~liG~nGsGKSTll~~i~g~ 100 (302)
.++|+|++|+|||||++.+++.
T Consensus 18 ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 18 RILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
No 416
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.23 E-value=0.0012 Score=54.38 Aligned_cols=23 Identities=17% Similarity=0.310 Sum_probs=20.9
Q ss_pred EEEEEccCCCCccchhhhhhhcc
Q psy2071 79 CIVLVGETGSGKTTQIPQWCVEY 101 (302)
Q Consensus 79 i~~liG~nGsGKSTll~~i~g~~ 101 (302)
+++|.|++||||||+.+.++..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 79999999999999999998754
No 417
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=96.23 E-value=0.015 Score=54.23 Aligned_cols=132 Identities=17% Similarity=0.170 Sum_probs=65.0
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhhccccccc-eeeeee
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQE-VGYSIR 144 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~ 144 (302)
+.......+..+.-+.|.+|+|+|||...-.++... .+.+.+.. |.+.-.......+.. + +.. ++..
T Consensus 97 ~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~---~~~~Lvl~--P~~~L~~Q~~~~~~~-~----~~~~v~~~-- 164 (472)
T 2fwr_A 97 YQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL---STPTLIVV--PTLALAEQWKERLGI-F----GEEYVGEF-- 164 (472)
T ss_dssp HHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH---CSCEEEEE--SSHHHHHHHHHHGGG-G----CGGGEEEB--
T ss_pred HHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc---CCCEEEEE--CCHHHHHHHHHHHHh-C----CCcceEEE--
Confidence 344445556666778999999999998743332222 23444433 222211222222222 2 112 2221
Q ss_pred ecCCCCccccccccCHHHHHHHhccccCCCCCcEEEEcCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEEEecC
Q psy2071 145 FEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILMGVLKEVIKQRADLKLVIMSATLD 218 (302)
Q Consensus 145 ~~~~~~~~~~~~~lS~G~~qr~~la~al~~~p~lliLDE~~~p~~~lD~~~~~l~~ll~~~~~~~~~ii~~thd 218 (302)
.........+-..|.+...+.. ..+..+.++||+||+|.-... . . ..++.......+..+++|..
T Consensus 165 -~g~~~~~~~Ivv~T~~~l~~~~--~~~~~~~~liIvDEaH~~~~~-~--~---~~~~~~~~~~~~l~lSATp~ 229 (472)
T 2fwr_A 165 -SGRIKELKPLTVSTYDSAYVNA--EKLGNRFMLLIFDEVHHLPAE-S--Y---VQIAQMSIAPFRLGLTATFE 229 (472)
T ss_dssp -SSSCBCCCSEEEEEHHHHHHTH--HHHTTTCSEEEEETGGGTTST-T--T---HHHHHTCCCSEEEEEESCCC
T ss_pred -CCCcCCcCCEEEEEcHHHHHHH--HHhcCCCCEEEEECCcCCCCh-H--H---HHHHHhcCCCeEEEEecCcc
Confidence 1111112233344444443321 123457999999998864322 1 1 22333344456778888875
No 418
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=96.22 E-value=0.0012 Score=52.05 Aligned_cols=23 Identities=26% Similarity=0.521 Sum_probs=20.3
Q ss_pred EEEEEccCCCCccchhhhhhhcc
Q psy2071 79 CIVLVGETGSGKTTQIPQWCVEY 101 (302)
Q Consensus 79 i~~liG~nGsGKSTll~~i~g~~ 101 (302)
-++|+|+.|+|||||++.+++..
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 37899999999999999998754
No 419
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=96.21 E-value=0.0012 Score=51.75 Aligned_cols=22 Identities=27% Similarity=0.536 Sum_probs=19.6
Q ss_pred EEEEEccCCCCccchhhhhhhc
Q psy2071 79 CIVLVGETGSGKTTQIPQWCVE 100 (302)
Q Consensus 79 i~~liG~nGsGKSTll~~i~g~ 100 (302)
-++++|+.|+|||||++.+++.
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3789999999999999999864
No 420
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.21 E-value=0.0026 Score=50.99 Aligned_cols=34 Identities=26% Similarity=0.395 Sum_probs=25.3
Q ss_pred HHHHHHHH--hCCEEEEEccCCCCccchhhhhhhcc
Q psy2071 68 TEFMTLLA--QNQCIVLVGETGSGKTTQIPQWCVEY 101 (302)
Q Consensus 68 ~~i~~~i~--~g~i~~liG~nGsGKSTll~~i~g~~ 101 (302)
+.+...+. .+..+.|.||.|+||||+++.++..+
T Consensus 32 ~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 32 RRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp HHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 33344443 34678999999999999999887654
No 421
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.21 E-value=0.0012 Score=51.69 Aligned_cols=22 Identities=27% Similarity=0.486 Sum_probs=19.5
Q ss_pred EEEEEccCCCCccchhhhhhhc
Q psy2071 79 CIVLVGETGSGKTTQIPQWCVE 100 (302)
Q Consensus 79 i~~liG~nGsGKSTll~~i~g~ 100 (302)
.++|+|+.|+|||||++.+++-
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999998764
No 422
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=96.21 E-value=0.0012 Score=53.61 Aligned_cols=23 Identities=26% Similarity=0.332 Sum_probs=20.4
Q ss_pred CEEEEEccCCCCccchhhhhhhc
Q psy2071 78 QCIVLVGETGSGKTTQIPQWCVE 100 (302)
Q Consensus 78 ~i~~liG~nGsGKSTll~~i~g~ 100 (302)
-.++|+|+.|+|||||++.+++.
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35899999999999999999864
No 423
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=96.20 E-value=0.0012 Score=53.37 Aligned_cols=23 Identities=17% Similarity=0.306 Sum_probs=20.5
Q ss_pred EEEEEccCCCCccchhhhhhhcc
Q psy2071 79 CIVLVGETGSGKTTQIPQWCVEY 101 (302)
Q Consensus 79 i~~liG~nGsGKSTll~~i~g~~ 101 (302)
.++|+|+.|+|||||++.+++..
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 58999999999999999998753
No 424
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=96.20 E-value=0.0013 Score=51.98 Aligned_cols=21 Identities=29% Similarity=0.721 Sum_probs=19.3
Q ss_pred EEEEccCCCCccchhhhhhhc
Q psy2071 80 IVLVGETGSGKTTQIPQWCVE 100 (302)
Q Consensus 80 ~~liG~nGsGKSTll~~i~g~ 100 (302)
++|+|+.|+|||||++.+++.
T Consensus 6 i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 6 ILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECcCCCCHHHHHHHHHhC
Confidence 789999999999999999864
No 425
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.19 E-value=0.0011 Score=53.27 Aligned_cols=22 Identities=32% Similarity=0.489 Sum_probs=19.5
Q ss_pred CEEEEEccCCCCccchhhhhhh
Q psy2071 78 QCIVLVGETGSGKTTQIPQWCV 99 (302)
Q Consensus 78 ~i~~liG~nGsGKSTll~~i~g 99 (302)
-.++|+|++|+|||||++.+++
T Consensus 19 ~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 19 LRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp EEEEEEEETTSSHHHHHHHTCC
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 3589999999999999999874
No 426
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=96.19 E-value=0.0013 Score=51.98 Aligned_cols=22 Identities=36% Similarity=0.678 Sum_probs=19.7
Q ss_pred EEEEEccCCCCccchhhhhhhc
Q psy2071 79 CIVLVGETGSGKTTQIPQWCVE 100 (302)
Q Consensus 79 i~~liG~nGsGKSTll~~i~g~ 100 (302)
-++|+|+.|+|||||++.+++.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4789999999999999999864
No 427
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=96.18 E-value=0.0013 Score=52.52 Aligned_cols=23 Identities=22% Similarity=0.609 Sum_probs=20.1
Q ss_pred EEEEEccCCCCccchhhhhhhcc
Q psy2071 79 CIVLVGETGSGKTTQIPQWCVEY 101 (302)
Q Consensus 79 i~~liG~nGsGKSTll~~i~g~~ 101 (302)
.++|+|+.|||||||++.+++..
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47999999999999999987643
No 428
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.18 E-value=0.0013 Score=51.79 Aligned_cols=23 Identities=26% Similarity=0.485 Sum_probs=19.9
Q ss_pred EEEEEccCCCCccchhhhhhhcc
Q psy2071 79 CIVLVGETGSGKTTQIPQWCVEY 101 (302)
Q Consensus 79 i~~liG~nGsGKSTll~~i~g~~ 101 (302)
-++++|+.|+|||||++.+++..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37899999999999999987643
No 429
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=96.17 E-value=0.0013 Score=51.97 Aligned_cols=21 Identities=38% Similarity=0.552 Sum_probs=19.1
Q ss_pred EEEEccCCCCccchhhhhhhc
Q psy2071 80 IVLVGETGSGKTTQIPQWCVE 100 (302)
Q Consensus 80 ~~liG~nGsGKSTll~~i~g~ 100 (302)
++|+|+.|+|||||++.+++.
T Consensus 5 i~ivG~~~~GKSsli~~l~~~ 25 (169)
T 3q85_A 5 VMLVGESGVGKSTLAGTFGGL 25 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 789999999999999998764
No 430
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.16 E-value=0.0015 Score=52.08 Aligned_cols=25 Identities=32% Similarity=0.476 Sum_probs=20.7
Q ss_pred hCCEEEEEccCCCCccchhhhhhhc
Q psy2071 76 QNQCIVLVGETGSGKTTQIPQWCVE 100 (302)
Q Consensus 76 ~g~i~~liG~nGsGKSTll~~i~g~ 100 (302)
.-++++|+|+.||||||+-+.|+-.
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHHH
Confidence 3478999999999999999988654
No 431
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=96.16 E-value=0.0013 Score=52.51 Aligned_cols=22 Identities=18% Similarity=0.598 Sum_probs=19.6
Q ss_pred EEEEEccCCCCccchhhhhhhc
Q psy2071 79 CIVLVGETGSGKTTQIPQWCVE 100 (302)
Q Consensus 79 i~~liG~nGsGKSTll~~i~g~ 100 (302)
-++|+|+.|+|||||++.+++.
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998764
No 432
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=96.15 E-value=0.0014 Score=51.55 Aligned_cols=22 Identities=27% Similarity=0.459 Sum_probs=19.5
Q ss_pred EEEEEccCCCCccchhhhhhhc
Q psy2071 79 CIVLVGETGSGKTTQIPQWCVE 100 (302)
Q Consensus 79 i~~liG~nGsGKSTll~~i~g~ 100 (302)
-++++|+.|+|||||++.+++-
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3789999999999999999864
No 433
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=96.15 E-value=0.0014 Score=52.22 Aligned_cols=22 Identities=23% Similarity=0.641 Sum_probs=19.6
Q ss_pred EEEEEccCCCCccchhhhhhhc
Q psy2071 79 CIVLVGETGSGKTTQIPQWCVE 100 (302)
Q Consensus 79 i~~liG~nGsGKSTll~~i~g~ 100 (302)
-++|+|+.|+|||||++.+++.
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3799999999999999999764
No 434
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=96.14 E-value=0.046 Score=47.96 Aligned_cols=157 Identities=18% Similarity=0.200 Sum_probs=74.4
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeecCchhhhHHHHHHHhhhhhccccccceeeeeee
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRF 145 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 145 (302)
+.......+.+|+-+.+.+|+|+|||...-..+. .. .+.+.+.. |.+.-+......+.... ......+... .
T Consensus 20 ~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~--~~-~~~~liv~--P~~~L~~q~~~~~~~~~-~~~~~~~~~~--~ 91 (337)
T 2z0m_A 20 VQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPIL--EL-GMKSLVVT--PTRELTRQVASHIRDIG-RYMDTKVAEV--Y 91 (337)
T ss_dssp HHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHH--HH-TCCEEEEC--SSHHHHHHHHHHHHHHT-TTSCCCEEEE--C
T ss_pred HHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHH--hh-cCCEEEEe--CCHHHHHHHHHHHHHHh-hhcCCcEEEE--E
Confidence 3445555677888999999999999986433322 11 23333322 33322222222222111 0111111111 1
Q ss_pred cCCCC-------ccccccccCHHHHHHHhcccc-CCCCCcEEEEcCCCCCCcchHHHHHHHHHHHHHcCCC-cEEEEEEe
Q psy2071 146 EDCSS-------PKTVLKYMTDGMLLREGMSDP-MLENYQVILLDEAHERTLATDILMGVLKEVIKQRADL-KLVIMSAT 216 (302)
Q Consensus 146 ~~~~~-------~~~~~~~lS~G~~qr~~la~a-l~~~p~lliLDE~~~p~~~lD~~~~~l~~ll~~~~~~-~~~ii~~t 216 (302)
..... ....+-..|.+...+..-... .+.+.+++|+||+|.-... .....+..++...... ...++++|
T Consensus 92 ~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~--~~~~~~~~~~~~~~~~~~~~~~SAT 169 (337)
T 2z0m_A 92 GGMPYKAQINRVRNADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFEM--GFIDDIKIILAQTSNRKITGLFSAT 169 (337)
T ss_dssp TTSCHHHHHHHHTTCSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHHHHHT--TCHHHHHHHHHHCTTCSEEEEEESC
T ss_pred CCcchHHHHhhcCCCCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHHhhcc--ccHHHHHHHHhhCCcccEEEEEeCc
Confidence 11000 112344567776665433222 3567899999998742100 0113344445444433 35567888
Q ss_pred cCHH---HHHhhccCCCee
Q psy2071 217 LDAG---KFQQYFDNAPLM 232 (302)
Q Consensus 217 hd~~---~~~~~~d~~~~l 232 (302)
...+ .+..+......+
T Consensus 170 ~~~~~~~~~~~~~~~~~~~ 188 (337)
T 2z0m_A 170 IPEEIRKVVKDFITNYEEI 188 (337)
T ss_dssp CCHHHHHHHHHHSCSCEEE
T ss_pred CCHHHHHHHHHhcCCceee
Confidence 7654 344444444333
No 435
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.13 E-value=0.0091 Score=59.52 Aligned_cols=23 Identities=26% Similarity=0.411 Sum_probs=20.9
Q ss_pred EEEEEccCCCCccchhhhhhhcc
Q psy2071 79 CIVLVGETGSGKTTQIPQWCVEY 101 (302)
Q Consensus 79 i~~liG~nGsGKSTll~~i~g~~ 101 (302)
.+.|.||+|+|||++.+.++...
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l 545 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESI 545 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998765
No 436
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.13 E-value=0.002 Score=56.80 Aligned_cols=26 Identities=19% Similarity=0.380 Sum_probs=19.1
Q ss_pred hCCEEEEEccCCCCccchhhhhhhcc
Q psy2071 76 QNQCIVLVGETGSGKTTQIPQWCVEY 101 (302)
Q Consensus 76 ~g~i~~liG~nGsGKSTll~~i~g~~ 101 (302)
++-+++|.|++||||||+.+.+...+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999887644
No 437
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.13 E-value=0.0015 Score=54.33 Aligned_cols=23 Identities=48% Similarity=0.614 Sum_probs=19.5
Q ss_pred EEEEEccCCCCccchhhhhhhcc
Q psy2071 79 CIVLVGETGSGKTTQIPQWCVEY 101 (302)
Q Consensus 79 i~~liG~nGsGKSTll~~i~g~~ 101 (302)
.++|+|+.||||||+.+.|+-.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999886543
No 438
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.12 E-value=0.0015 Score=53.04 Aligned_cols=23 Identities=39% Similarity=0.395 Sum_probs=20.3
Q ss_pred EEEEEccCCCCccchhhhhhhcc
Q psy2071 79 CIVLVGETGSGKTTQIPQWCVEY 101 (302)
Q Consensus 79 i~~liG~nGsGKSTll~~i~g~~ 101 (302)
+++|.|+.||||||+.+.+.-.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999987654
No 439
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=96.12 E-value=0.0014 Score=52.20 Aligned_cols=22 Identities=32% Similarity=0.454 Sum_probs=19.9
Q ss_pred EEEEEccCCCCccchhhhhhhc
Q psy2071 79 CIVLVGETGSGKTTQIPQWCVE 100 (302)
Q Consensus 79 i~~liG~nGsGKSTll~~i~g~ 100 (302)
.++|+|+.|+|||||++.+++.
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999875
No 440
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.11 E-value=0.0014 Score=54.90 Aligned_cols=26 Identities=27% Similarity=0.343 Sum_probs=21.9
Q ss_pred hCCEEEEEccCCCCccchhhhhhhcc
Q psy2071 76 QNQCIVLVGETGSGKTTQIPQWCVEY 101 (302)
Q Consensus 76 ~g~i~~liG~nGsGKSTll~~i~g~~ 101 (302)
.+.+++|+|++||||||+.+.|+-.+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34679999999999999999987544
No 441
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=96.11 E-value=0.002 Score=58.56 Aligned_cols=22 Identities=23% Similarity=0.137 Sum_probs=20.5
Q ss_pred CEEEEEccCCCCccchhhhhhh
Q psy2071 78 QCIVLVGETGSGKTTQIPQWCV 99 (302)
Q Consensus 78 ~i~~liG~nGsGKSTll~~i~g 99 (302)
-.++|+|.+|+|||||++.+++
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~ 24 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTK 24 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHC
Confidence 4689999999999999999988
No 442
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=96.10 E-value=0.0014 Score=52.82 Aligned_cols=21 Identities=29% Similarity=0.452 Sum_probs=19.3
Q ss_pred EEEEccCCCCccchhhhhhhc
Q psy2071 80 IVLVGETGSGKTTQIPQWCVE 100 (302)
Q Consensus 80 ~~liG~nGsGKSTll~~i~g~ 100 (302)
++|+|+.|+|||||++.+++.
T Consensus 4 i~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 4 IIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHhCc
Confidence 789999999999999998874
No 443
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=96.10 E-value=0.0015 Score=52.05 Aligned_cols=25 Identities=20% Similarity=0.323 Sum_probs=21.4
Q ss_pred hCCEEEEEccCCCCccchhhhhhhc
Q psy2071 76 QNQCIVLVGETGSGKTTQIPQWCVE 100 (302)
Q Consensus 76 ~g~i~~liG~nGsGKSTll~~i~g~ 100 (302)
+.-.++|+|+.|+|||||++.+++.
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3456899999999999999999764
No 444
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.10 E-value=0.0016 Score=52.86 Aligned_cols=23 Identities=30% Similarity=0.507 Sum_probs=20.2
Q ss_pred CEEEEEccCCCCccchhhhhhhc
Q psy2071 78 QCIVLVGETGSGKTTQIPQWCVE 100 (302)
Q Consensus 78 ~i~~liG~nGsGKSTll~~i~g~ 100 (302)
.+++|+|+.||||||+.+.++-.
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999988654
No 445
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=96.10 E-value=0.0015 Score=56.03 Aligned_cols=23 Identities=30% Similarity=0.411 Sum_probs=20.7
Q ss_pred EEEEEccCCCCccchhhhhhhcc
Q psy2071 79 CIVLVGETGSGKTTQIPQWCVEY 101 (302)
Q Consensus 79 i~~liG~nGsGKSTll~~i~g~~ 101 (302)
.++|+|.+|+|||||++.|+|..
T Consensus 23 ~I~lvG~~g~GKSSlin~l~~~~ 45 (247)
T 3lxw_A 23 RLILVGRTGAGKSATGNSILGQR 45 (247)
T ss_dssp EEEEESSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 58999999999999999998753
No 446
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=96.07 E-value=0.0016 Score=51.24 Aligned_cols=22 Identities=27% Similarity=0.531 Sum_probs=19.5
Q ss_pred EEEEEccCCCCccchhhhhhhc
Q psy2071 79 CIVLVGETGSGKTTQIPQWCVE 100 (302)
Q Consensus 79 i~~liG~nGsGKSTll~~i~g~ 100 (302)
-++|+|+.|+|||||++.+++-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3789999999999999999863
No 447
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.06 E-value=0.0016 Score=53.58 Aligned_cols=24 Identities=29% Similarity=0.465 Sum_probs=20.5
Q ss_pred CCEEEEEccCCCCccchhhhhhhc
Q psy2071 77 NQCIVLVGETGSGKTTQIPQWCVE 100 (302)
Q Consensus 77 g~i~~liG~nGsGKSTll~~i~g~ 100 (302)
..+++|.|+.||||||+.+.|+-.
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999888643
No 448
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=96.05 E-value=0.0017 Score=52.82 Aligned_cols=22 Identities=36% Similarity=0.697 Sum_probs=19.9
Q ss_pred EEEEEccCCCCccchhhhhhhc
Q psy2071 79 CIVLVGETGSGKTTQIPQWCVE 100 (302)
Q Consensus 79 i~~liG~nGsGKSTll~~i~g~ 100 (302)
-++|+|+.|+|||||++.+++.
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4899999999999999999874
No 449
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=96.04 E-value=0.0013 Score=61.64 Aligned_cols=43 Identities=23% Similarity=0.315 Sum_probs=33.9
Q ss_pred HHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEe
Q psy2071 69 EFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVA 111 (302)
Q Consensus 69 ~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~ 111 (302)
|....+-+|+.++|+|++|+|||||++.++.......+.+.+.
T Consensus 143 D~L~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i~V~ 185 (473)
T 1sky_E 143 DLLAPYIKGGKIGLFGGAGVGKTVLIQELIHNIAQEHGGISVF 185 (473)
T ss_dssp HHHSCEETTCEEEEECCSSSCHHHHHHHHHHHHHHHTCCCEEE
T ss_pred HHHhhhccCCEEEEECCCCCCccHHHHHHHhhhhhccCcEEEE
Confidence 3456667899999999999999999999988766555655443
No 450
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.03 E-value=0.002 Score=53.07 Aligned_cols=26 Identities=27% Similarity=0.446 Sum_probs=21.7
Q ss_pred hCCEEEEEccCCCCccchhhhhhhcc
Q psy2071 76 QNQCIVLVGETGSGKTTQIPQWCVEY 101 (302)
Q Consensus 76 ~g~i~~liG~nGsGKSTll~~i~g~~ 101 (302)
.+-+++|+|+.||||||+.+.|+-.+
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34589999999999999999887543
No 451
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.02 E-value=0.0018 Score=53.88 Aligned_cols=22 Identities=36% Similarity=0.448 Sum_probs=19.1
Q ss_pred EEEEEccCCCCccchhhhhhhc
Q psy2071 79 CIVLVGETGSGKTTQIPQWCVE 100 (302)
Q Consensus 79 i~~liG~nGsGKSTll~~i~g~ 100 (302)
.++|+|+.||||||+.+.|+-.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999988643
No 452
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=96.02 E-value=0.0016 Score=53.41 Aligned_cols=22 Identities=36% Similarity=0.484 Sum_probs=19.8
Q ss_pred EEEEEccCCCCccchhhhhhhc
Q psy2071 79 CIVLVGETGSGKTTQIPQWCVE 100 (302)
Q Consensus 79 i~~liG~nGsGKSTll~~i~g~ 100 (302)
.++|+|++|+|||||++.+++.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 4899999999999999998764
No 453
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=96.02 E-value=0.0018 Score=51.23 Aligned_cols=22 Identities=36% Similarity=0.505 Sum_probs=19.6
Q ss_pred EEEEEccCCCCccchhhhhhhc
Q psy2071 79 CIVLVGETGSGKTTQIPQWCVE 100 (302)
Q Consensus 79 i~~liG~nGsGKSTll~~i~g~ 100 (302)
.++|+|+.|+|||||++.+++-
T Consensus 9 ~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 9 RILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999763
No 454
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.02 E-value=0.0016 Score=54.85 Aligned_cols=30 Identities=33% Similarity=0.526 Sum_probs=24.7
Q ss_pred HHHHhCCEEEEEccCCCCccchhhhhhhcc
Q psy2071 72 TLLAQNQCIVLVGETGSGKTTQIPQWCVEY 101 (302)
Q Consensus 72 ~~i~~g~i~~liG~nGsGKSTll~~i~g~~ 101 (302)
..+.+..++.|+||.||||+|+-+.|+-.+
T Consensus 24 ~~~~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 24 QKLAKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp CCTTSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred hhccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 345677899999999999999998887543
No 455
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=96.01 E-value=0.0018 Score=51.58 Aligned_cols=22 Identities=32% Similarity=0.590 Sum_probs=19.7
Q ss_pred EEEEEccCCCCccchhhhhhhc
Q psy2071 79 CIVLVGETGSGKTTQIPQWCVE 100 (302)
Q Consensus 79 i~~liG~nGsGKSTll~~i~g~ 100 (302)
-++|+|+.|+|||||++.+++.
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4889999999999999999864
No 456
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.00 E-value=0.0026 Score=54.31 Aligned_cols=26 Identities=27% Similarity=0.330 Sum_probs=22.2
Q ss_pred HhCCEEEEEccCCCCccchhhhhhhc
Q psy2071 75 AQNQCIVLVGETGSGKTTQIPQWCVE 100 (302)
Q Consensus 75 ~~g~i~~liG~nGsGKSTll~~i~g~ 100 (302)
.++-+++|+|+.||||||+.+.|+-.
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~ 52 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKS 52 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 45668999999999999999988643
No 457
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.00 E-value=0.0017 Score=51.94 Aligned_cols=23 Identities=30% Similarity=0.361 Sum_probs=20.0
Q ss_pred CEEEEEccCCCCccchhhhhhhc
Q psy2071 78 QCIVLVGETGSGKTTQIPQWCVE 100 (302)
Q Consensus 78 ~i~~liG~nGsGKSTll~~i~g~ 100 (302)
.+++|+|+.||||||+.+.++-.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARA 25 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999988654
No 458
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=95.99 E-value=0.0018 Score=52.05 Aligned_cols=22 Identities=32% Similarity=0.429 Sum_probs=19.7
Q ss_pred EEEEEccCCCCccchhhhhhhc
Q psy2071 79 CIVLVGETGSGKTTQIPQWCVE 100 (302)
Q Consensus 79 i~~liG~nGsGKSTll~~i~g~ 100 (302)
-++|+|+.|+|||||++.+++.
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3789999999999999999864
No 459
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=95.98 E-value=0.0018 Score=52.15 Aligned_cols=22 Identities=27% Similarity=0.480 Sum_probs=19.8
Q ss_pred EEEEEccCCCCccchhhhhhhc
Q psy2071 79 CIVLVGETGSGKTTQIPQWCVE 100 (302)
Q Consensus 79 i~~liG~nGsGKSTll~~i~g~ 100 (302)
-++|+|+.|+|||||++.+++.
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4799999999999999999864
No 460
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=95.98 E-value=0.0018 Score=52.51 Aligned_cols=22 Identities=27% Similarity=0.454 Sum_probs=20.1
Q ss_pred EEEEEccCCCCccchhhhhhhc
Q psy2071 79 CIVLVGETGSGKTTQIPQWCVE 100 (302)
Q Consensus 79 i~~liG~nGsGKSTll~~i~g~ 100 (302)
-++|+|+.|+|||||++.+++.
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3889999999999999999875
No 461
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=95.98 E-value=0.0019 Score=50.74 Aligned_cols=21 Identities=33% Similarity=0.461 Sum_probs=19.0
Q ss_pred EEEEccCCCCccchhhhhhhc
Q psy2071 80 IVLVGETGSGKTTQIPQWCVE 100 (302)
Q Consensus 80 ~~liG~nGsGKSTll~~i~g~ 100 (302)
++++|+.|+|||||++.+++-
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 789999999999999998763
No 462
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=95.97 E-value=0.01 Score=63.61 Aligned_cols=39 Identities=23% Similarity=0.154 Sum_probs=29.4
Q ss_pred HHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEee
Q psy2071 74 LAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVAC 112 (302)
Q Consensus 74 i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~ 112 (302)
+.+|.++.|.|++|+|||||.-+++.......+.+.+..
T Consensus 380 l~~G~lilI~G~pGsGKTtLaLq~a~~~~~~G~~vlyis 418 (1706)
T 3cmw_A 380 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 418 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred cCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEE
Confidence 559999999999999999998887765443334454443
No 463
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.97 E-value=0.002 Score=51.22 Aligned_cols=23 Identities=30% Similarity=0.209 Sum_probs=19.8
Q ss_pred EEEEEccCCCCccchhhhhhhcc
Q psy2071 79 CIVLVGETGSGKTTQIPQWCVEY 101 (302)
Q Consensus 79 i~~liG~nGsGKSTll~~i~g~~ 101 (302)
+++|.|+.||||||+.+.+.-.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999887543
No 464
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=95.97 E-value=0.002 Score=55.63 Aligned_cols=23 Identities=26% Similarity=0.338 Sum_probs=20.6
Q ss_pred EEEEEccCCCCccchhhhhhhcc
Q psy2071 79 CIVLVGETGSGKTTQIPQWCVEY 101 (302)
Q Consensus 79 i~~liG~nGsGKSTll~~i~g~~ 101 (302)
.++|+|.+|||||||++.++|..
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999998753
No 465
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=95.97 E-value=0.0019 Score=51.36 Aligned_cols=23 Identities=22% Similarity=0.489 Sum_probs=20.2
Q ss_pred EEEEEccCCCCccchhhhhhhcc
Q psy2071 79 CIVLVGETGSGKTTQIPQWCVEY 101 (302)
Q Consensus 79 i~~liG~nGsGKSTll~~i~g~~ 101 (302)
.++|+|+.|+|||||++.+++..
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48999999999999999998643
No 466
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=95.96 E-value=0.002 Score=51.34 Aligned_cols=22 Identities=36% Similarity=0.525 Sum_probs=19.5
Q ss_pred EEEEEccCCCCccchhhhhhhc
Q psy2071 79 CIVLVGETGSGKTTQIPQWCVE 100 (302)
Q Consensus 79 i~~liG~nGsGKSTll~~i~g~ 100 (302)
-++|+|+.|+|||||++.+++.
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 3789999999999999998764
No 467
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=95.95 E-value=0.0019 Score=52.20 Aligned_cols=22 Identities=32% Similarity=0.412 Sum_probs=19.8
Q ss_pred EEEEEccCCCCccchhhhhhhc
Q psy2071 79 CIVLVGETGSGKTTQIPQWCVE 100 (302)
Q Consensus 79 i~~liG~nGsGKSTll~~i~g~ 100 (302)
.++++|+.|+|||||++.+++-
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4889999999999999999864
No 468
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=95.95 E-value=0.0059 Score=61.05 Aligned_cols=25 Identities=32% Similarity=0.351 Sum_probs=21.5
Q ss_pred CCEEEEEccCCCCccchhhhhhhcc
Q psy2071 77 NQCIVLVGETGSGKTTQIPQWCVEY 101 (302)
Q Consensus 77 g~i~~liG~nGsGKSTll~~i~g~~ 101 (302)
..-+.|.||.|||||||.++++...
T Consensus 238 p~GILL~GPPGTGKT~LAraiA~el 262 (806)
T 3cf2_A 238 PRGILLYGPPGTGKTLIARAVANET 262 (806)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHTTT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 3458999999999999999998754
No 469
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=95.93 E-value=0.002 Score=51.60 Aligned_cols=22 Identities=27% Similarity=0.536 Sum_probs=19.8
Q ss_pred EEEEEccCCCCccchhhhhhhc
Q psy2071 79 CIVLVGETGSGKTTQIPQWCVE 100 (302)
Q Consensus 79 i~~liG~nGsGKSTll~~i~g~ 100 (302)
-++|+|+.|+|||||++.+++.
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhhC
Confidence 4899999999999999999864
No 470
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.92 E-value=0.0021 Score=54.04 Aligned_cols=23 Identities=39% Similarity=0.434 Sum_probs=19.8
Q ss_pred EEEEEccCCCCccchhhhhhhcc
Q psy2071 79 CIVLVGETGSGKTTQIPQWCVEY 101 (302)
Q Consensus 79 i~~liG~nGsGKSTll~~i~g~~ 101 (302)
+++|.|++||||||+.+.|+-.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999886543
No 471
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.92 E-value=0.0021 Score=51.34 Aligned_cols=23 Identities=30% Similarity=0.484 Sum_probs=20.1
Q ss_pred EEEEEccCCCCccchhhhhhhcc
Q psy2071 79 CIVLVGETGSGKTTQIPQWCVEY 101 (302)
Q Consensus 79 i~~liG~nGsGKSTll~~i~g~~ 101 (302)
.++|+|+.|+|||||++.+++..
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 47999999999999999987643
No 472
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=95.91 E-value=0.002 Score=52.22 Aligned_cols=22 Identities=23% Similarity=0.419 Sum_probs=19.1
Q ss_pred EEEEEccCCCCccchhhhhhhc
Q psy2071 79 CIVLVGETGSGKTTQIPQWCVE 100 (302)
Q Consensus 79 i~~liG~nGsGKSTll~~i~g~ 100 (302)
-++|+|++|+|||||++.+++-
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999877653
No 473
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=95.90 E-value=0.0038 Score=51.92 Aligned_cols=27 Identities=26% Similarity=0.330 Sum_probs=22.7
Q ss_pred hCCEEEEEccCCCCccchhhhhhhccc
Q psy2071 76 QNQCIVLVGETGSGKTTQIPQWCVEYS 102 (302)
Q Consensus 76 ~g~i~~liG~nGsGKSTll~~i~g~~~ 102 (302)
.--+++|+|..|+|||||++.+++...
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 345799999999999999999987653
No 474
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=95.90 E-value=0.0021 Score=51.70 Aligned_cols=23 Identities=22% Similarity=0.499 Sum_probs=20.1
Q ss_pred EEEEEccCCCCccchhhhhhhcc
Q psy2071 79 CIVLVGETGSGKTTQIPQWCVEY 101 (302)
Q Consensus 79 i~~liG~nGsGKSTll~~i~g~~ 101 (302)
-++|+|+.|+|||||++.+++..
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999997643
No 475
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=95.90 E-value=0.0045 Score=54.97 Aligned_cols=44 Identities=16% Similarity=0.233 Sum_probs=32.4
Q ss_pred HHHHHHHHHHhCCEEEEEccCCCCccchhhhhhhcccccCCCEEEeec
Q psy2071 66 YRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACT 113 (302)
Q Consensus 66 ~~~~i~~~i~~g~i~~liG~nGsGKSTll~~i~g~~~~~~G~~~i~~~ 113 (302)
..+.+...+..|.+++|.|+.|+|||||++.++... |.+++.+.
T Consensus 20 el~~L~~~l~~~~~v~i~G~~G~GKT~Ll~~~~~~~----~~~~~~~~ 63 (350)
T 2qen_A 20 ESRKLEESLENYPLTLLLGIRRVGKSSLLRAFLNER----PGILIDCR 63 (350)
T ss_dssp HHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHS----SEEEEEHH
T ss_pred HHHHHHHHHhcCCeEEEECCCcCCHHHHHHHHHHHc----CcEEEEee
Confidence 345555566668999999999999999999987543 34555543
No 476
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=95.89 E-value=0.0024 Score=54.13 Aligned_cols=28 Identities=32% Similarity=0.589 Sum_probs=21.6
Q ss_pred HhCCEEEEEccCCCCccchhhhhhhccc
Q psy2071 75 AQNQCIVLVGETGSGKTTQIPQWCVEYS 102 (302)
Q Consensus 75 ~~g~i~~liG~nGsGKSTll~~i~g~~~ 102 (302)
..|.+++|.|+.||||||+.+.+.-.+.
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5789999999999999999999876554
No 477
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.89 E-value=0.002 Score=52.13 Aligned_cols=23 Identities=39% Similarity=0.375 Sum_probs=20.0
Q ss_pred CEEEEEccCCCCccchhhhhhhc
Q psy2071 78 QCIVLVGETGSGKTTQIPQWCVE 100 (302)
Q Consensus 78 ~i~~liG~nGsGKSTll~~i~g~ 100 (302)
.+++|+|+.||||||+-+.|+-.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKA 25 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999888654
No 478
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=95.88 E-value=0.0022 Score=51.29 Aligned_cols=22 Identities=27% Similarity=0.672 Sum_probs=19.8
Q ss_pred EEEEEccCCCCccchhhhhhhc
Q psy2071 79 CIVLVGETGSGKTTQIPQWCVE 100 (302)
Q Consensus 79 i~~liG~nGsGKSTll~~i~g~ 100 (302)
-++|+|+.|+|||||++.+++.
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4899999999999999999864
No 479
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=95.88 E-value=0.0022 Score=52.49 Aligned_cols=22 Identities=36% Similarity=0.527 Sum_probs=19.8
Q ss_pred EEEEEccCCCCccchhhhhhhc
Q psy2071 79 CIVLVGETGSGKTTQIPQWCVE 100 (302)
Q Consensus 79 i~~liG~nGsGKSTll~~i~g~ 100 (302)
-++|+|++|+|||||++.+++.
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3899999999999999999864
No 480
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.88 E-value=0.0021 Score=55.46 Aligned_cols=26 Identities=27% Similarity=0.272 Sum_probs=22.2
Q ss_pred hCCEEEEEccCCCCccchhhhhhhcc
Q psy2071 76 QNQCIVLVGETGSGKTTQIPQWCVEY 101 (302)
Q Consensus 76 ~g~i~~liG~nGsGKSTll~~i~g~~ 101 (302)
.+.+++|+|++||||||+.+.|+-.+
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999987643
No 481
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=95.87 E-value=0.002 Score=56.00 Aligned_cols=22 Identities=36% Similarity=0.622 Sum_probs=19.4
Q ss_pred EEEEEccCCCCccchhhhhhhc
Q psy2071 79 CIVLVGETGSGKTTQIPQWCVE 100 (302)
Q Consensus 79 i~~liG~nGsGKSTll~~i~g~ 100 (302)
.++|+|.+|+|||||++.|.+.
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~ 31 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLT 31 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3889999999999999998764
No 482
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=95.86 E-value=0.0024 Score=56.56 Aligned_cols=22 Identities=23% Similarity=0.354 Sum_probs=20.5
Q ss_pred EEEEEccCCCCccchhhhhhhc
Q psy2071 79 CIVLVGETGSGKTTQIPQWCVE 100 (302)
Q Consensus 79 i~~liG~nGsGKSTll~~i~g~ 100 (302)
.++|+|.+|+|||||++.++|.
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999875
No 483
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=95.86 E-value=0.0036 Score=50.10 Aligned_cols=26 Identities=23% Similarity=0.463 Sum_probs=22.3
Q ss_pred CCEEEEEccCCCCccchhhhhhhccc
Q psy2071 77 NQCIVLVGETGSGKTTQIPQWCVEYS 102 (302)
Q Consensus 77 g~i~~liG~nGsGKSTll~~i~g~~~ 102 (302)
+..+.|.||+|+||||+++.++..+.
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHH
Confidence 56789999999999999998876553
No 484
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=95.85 E-value=0.0023 Score=52.39 Aligned_cols=22 Identities=27% Similarity=0.536 Sum_probs=19.7
Q ss_pred EEEEEccCCCCccchhhhhhhc
Q psy2071 79 CIVLVGETGSGKTTQIPQWCVE 100 (302)
Q Consensus 79 i~~liG~nGsGKSTll~~i~g~ 100 (302)
-++|+|+.|+|||||++.+.+.
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999764
No 485
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=95.85 E-value=0.0022 Score=55.10 Aligned_cols=23 Identities=35% Similarity=0.456 Sum_probs=20.6
Q ss_pred EEEEEccCCCCccchhhhhhhcc
Q psy2071 79 CIVLVGETGSGKTTQIPQWCVEY 101 (302)
Q Consensus 79 i~~liG~nGsGKSTll~~i~g~~ 101 (302)
.++|+|++|+|||||++.++|..
T Consensus 24 ~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 24 RIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEECTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998743
No 486
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=95.84 E-value=0.0023 Score=51.66 Aligned_cols=22 Identities=32% Similarity=0.551 Sum_probs=19.7
Q ss_pred EEEEEccCCCCccchhhhhhhc
Q psy2071 79 CIVLVGETGSGKTTQIPQWCVE 100 (302)
Q Consensus 79 i~~liG~nGsGKSTll~~i~g~ 100 (302)
-++|+|++|+|||||++.+++.
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3789999999999999999874
No 487
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=95.84 E-value=0.0023 Score=51.79 Aligned_cols=23 Identities=22% Similarity=0.458 Sum_probs=20.3
Q ss_pred EEEEEccCCCCccchhhhhhhcc
Q psy2071 79 CIVLVGETGSGKTTQIPQWCVEY 101 (302)
Q Consensus 79 i~~liG~nGsGKSTll~~i~g~~ 101 (302)
-++|+|+.|+|||||++.+++..
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48999999999999999998753
No 488
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.83 E-value=0.0023 Score=53.04 Aligned_cols=23 Identities=26% Similarity=0.463 Sum_probs=20.7
Q ss_pred EEEEEccCCCCccchhhhhhhcc
Q psy2071 79 CIVLVGETGSGKTTQIPQWCVEY 101 (302)
Q Consensus 79 i~~liG~nGsGKSTll~~i~g~~ 101 (302)
.++|+|+.|+|||||++.+++..
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998754
No 489
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=95.83 E-value=0.0024 Score=51.45 Aligned_cols=24 Identities=25% Similarity=0.422 Sum_probs=20.7
Q ss_pred CCEEEEEccCCCCccchhhhhhhc
Q psy2071 77 NQCIVLVGETGSGKTTQIPQWCVE 100 (302)
Q Consensus 77 g~i~~liG~nGsGKSTll~~i~g~ 100 (302)
.=.++++|+.|+|||||++.+++-
T Consensus 18 ~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 18 ELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHTTC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 345899999999999999998864
No 490
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=95.82 E-value=0.0023 Score=52.03 Aligned_cols=23 Identities=26% Similarity=0.559 Sum_probs=20.2
Q ss_pred EEEEEccCCCCccchhhhhhhcc
Q psy2071 79 CIVLVGETGSGKTTQIPQWCVEY 101 (302)
Q Consensus 79 i~~liG~nGsGKSTll~~i~g~~ 101 (302)
-++|+|+.|+|||||++.+++..
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48999999999999999998643
No 491
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=95.82 E-value=0.0022 Score=51.98 Aligned_cols=23 Identities=30% Similarity=0.310 Sum_probs=20.6
Q ss_pred EEEEEccCCCCccchhhhhhhcc
Q psy2071 79 CIVLVGETGSGKTTQIPQWCVEY 101 (302)
Q Consensus 79 i~~liG~nGsGKSTll~~i~g~~ 101 (302)
.++|+|+.|+|||||++.+++..
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTSCGG
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998754
No 492
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=95.81 E-value=0.0026 Score=56.47 Aligned_cols=23 Identities=22% Similarity=0.355 Sum_probs=21.1
Q ss_pred CEEEEEccCCCCccchhhhhhhc
Q psy2071 78 QCIVLVGETGSGKTTQIPQWCVE 100 (302)
Q Consensus 78 ~i~~liG~nGsGKSTll~~i~g~ 100 (302)
.+++|+|.+|+|||||++.++|.
T Consensus 11 g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 11 GYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 47899999999999999999885
No 493
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=95.81 E-value=0.0026 Score=51.43 Aligned_cols=24 Identities=33% Similarity=0.259 Sum_probs=20.6
Q ss_pred EEEEEccCCCCccchhhhhhhccc
Q psy2071 79 CIVLVGETGSGKTTQIPQWCVEYS 102 (302)
Q Consensus 79 i~~liG~nGsGKSTll~~i~g~~~ 102 (302)
-++|+|+.|+|||||++.+.+...
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHhhcc
Confidence 379999999999999998887543
No 494
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.80 E-value=0.0026 Score=52.44 Aligned_cols=25 Identities=24% Similarity=0.315 Sum_probs=21.4
Q ss_pred hCCEEEEEccCCCCccchhhhhhhc
Q psy2071 76 QNQCIVLVGETGSGKTTQIPQWCVE 100 (302)
Q Consensus 76 ~g~i~~liG~nGsGKSTll~~i~g~ 100 (302)
..-+++|+|+.||||||+.+.+.-.
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHh
Confidence 4568999999999999999988754
No 495
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=95.80 E-value=0.0025 Score=52.28 Aligned_cols=23 Identities=26% Similarity=0.608 Sum_probs=20.3
Q ss_pred EEEEEccCCCCccchhhhhhhcc
Q psy2071 79 CIVLVGETGSGKTTQIPQWCVEY 101 (302)
Q Consensus 79 i~~liG~nGsGKSTll~~i~g~~ 101 (302)
.++|+|+.|+|||||++.+++..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48999999999999999998753
No 496
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=95.80 E-value=0.0027 Score=50.88 Aligned_cols=21 Identities=29% Similarity=0.602 Sum_probs=9.1
Q ss_pred EEEEEccCCCCccchhhhhhh
Q psy2071 79 CIVLVGETGSGKTTQIPQWCV 99 (302)
Q Consensus 79 i~~liG~nGsGKSTll~~i~g 99 (302)
-++|+|+.|+|||||++.+++
T Consensus 10 ki~v~G~~~~GKssl~~~l~~ 30 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSE 30 (183)
T ss_dssp EEEEECCCCC-----------
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 489999999999999998764
No 497
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.79 E-value=0.0024 Score=51.89 Aligned_cols=22 Identities=23% Similarity=0.484 Sum_probs=19.8
Q ss_pred EEEEEccCCCCccchhhhhhhc
Q psy2071 79 CIVLVGETGSGKTTQIPQWCVE 100 (302)
Q Consensus 79 i~~liG~nGsGKSTll~~i~g~ 100 (302)
-++|+|+.|+|||||++.+++-
T Consensus 10 ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHcC
Confidence 4899999999999999999873
No 498
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=95.78 E-value=0.0036 Score=54.24 Aligned_cols=36 Identities=19% Similarity=0.228 Sum_probs=27.4
Q ss_pred HHHHHHHHhC-CEEEEEccCCCCccchhhhhhhcccc
Q psy2071 68 TEFMTLLAQN-QCIVLVGETGSGKTTQIPQWCVEYSK 103 (302)
Q Consensus 68 ~~i~~~i~~g-~i~~liG~nGsGKSTll~~i~g~~~~ 103 (302)
+.+...+... -.++++|.+|+|||||++.+.|....
T Consensus 89 ~~L~~~l~~~~~~v~~vG~~~vGKSslin~l~~~~~~ 125 (262)
T 3cnl_A 89 VLLKKLSFDRLARVLIVGVPNTGKSTIINKLKGKRAS 125 (262)
T ss_dssp HHHHHHCCCTTCEEEEEESTTSSHHHHHHHHHTTCC-
T ss_pred HHHHHHHHHhhhheEEeCCCCCCHHHHHHHHhccccc
Confidence 4455555554 58999999999999999999876543
No 499
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=95.78 E-value=0.0025 Score=51.10 Aligned_cols=22 Identities=32% Similarity=0.527 Sum_probs=19.6
Q ss_pred EEEEEccCCCCccchhhhhhhc
Q psy2071 79 CIVLVGETGSGKTTQIPQWCVE 100 (302)
Q Consensus 79 i~~liG~nGsGKSTll~~i~g~ 100 (302)
.++|+|+.|+|||||++.+++.
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4799999999999999998854
No 500
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=95.78 E-value=0.0025 Score=51.64 Aligned_cols=23 Identities=22% Similarity=0.559 Sum_probs=20.2
Q ss_pred EEEEEccCCCCccchhhhhhhcc
Q psy2071 79 CIVLVGETGSGKTTQIPQWCVEY 101 (302)
Q Consensus 79 i~~liG~nGsGKSTll~~i~g~~ 101 (302)
.++|+|+.|+|||||++.+++..
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48999999999999999998743
Done!