RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2071
(302 letters)
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase,
ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET:
ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Length = 773
Score = 389 bits (1001), Expect = e-131
Identities = 138/219 (63%), Positives = 170/219 (77%), Gaps = 1/219 (0%)
Query: 33 IASNLQVNPFTGYPYTPRYHELHRKRITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTT 92
+ ++NPFTG +TP+Y ++ + R LPV R EF+ L NQ +V VGETGSGKTT
Sbjct: 65 KLEDGKINPFTGREFTPKYVDILKIRRELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTT 124
Query: 93 QIPQWCVEYSKSVGA-KAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRFEDCSSP 151
QIPQ+ + VACTQPRRVAAMSVAQRV+EEMD +LG+EVGYSIRFE+ +S
Sbjct: 125 QIPQFVLFDEMPHLENTQVACTQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFENKTSN 184
Query: 152 KTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILMGVLKEVIKQRADLKLV 211
KT+LKYMTDGMLLRE M D L Y I+LDEAHERTLATDILMG+LK+V+K+R DLK++
Sbjct: 185 KTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKII 244
Query: 212 IMSATLDAGKFQQYFDNAPLMNVPGRTHPVEIFYTPEPP 250
IMSATLDA KFQ+YF++APL+ VPGRT+PVE++YTPE
Sbjct: 245 IMSATLDAEKFQRYFNDAPLLAVPGRTYPVELYYTPEFQ 283
Score = 73.1 bits (180), Expect = 1e-14
Identities = 28/40 (70%), Positives = 30/40 (75%)
Query: 258 PQCFTRPNEAKKAADDAKMRFAHIDGDHLTLLNVYHAFKQ 297
P F RP + KK ADDAK FAH DGDH+TLLNVYHAFK
Sbjct: 552 PNVFIRPTKDKKRADDAKNIFAHPDGDHITLLNVYHAFKS 591
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural
genomics, structural genomics consortium, SGC,
activator, ATP-binding, DNA-binding; HET: ADP; 2.80A
{Homo sapiens}
Length = 235
Score = 313 bits (805), Expect = e-108
Identities = 72/229 (31%), Positives = 128/229 (55%), Gaps = 9/229 (3%)
Query: 10 DPYITKKNREERLATVNASVSTSIASNLQVNPFTGYPYTPRYHELHRKRITLPVFEYRTE 69
+P+ + E LA I+ +L+ + ++R LPV ++ +E
Sbjct: 12 NPWTSSNIDEGPLAFATPE---QISMDLKNELMYQLEQDHDLQAILQERELLPVKKFESE 68
Query: 70 FMTLLAQNQCIVLVGETGSGKTTQIPQWCVE--YSKSVGAKA-VACTQPRRVAAMSVAQR 126
+ ++QN +++ G TG GKTTQ+PQ+ ++ A+ + TQPRR++A+SVA+R
Sbjct: 69 ILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAER 128
Query: 127 VSEEMDCQLGQEVGYSIRFEDC-SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAH 185
V+ E + G+ GYS+RFE P + + T G+LLR+ + + +++DE H
Sbjct: 129 VAFERGEEPGKSCGYSVRFESILPRPHASIMFCTVGVLLRK--LEAGIRGISHVIVDEIH 186
Query: 186 ERTLATDILMGVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNV 234
ER + TD L+ VL++V++ ++++V+MSAT+D F +YF N P++ V
Sbjct: 187 ERDINTDFLLVVLRDVVQAYPEVRIVLMSATIDTSMFCEYFFNCPIIEV 235
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding,
viral nucleoprotein, endoplasmic reticulum, helicase,
hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A*
2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A
2bhr_A
Length = 451
Score = 174 bits (443), Expect = 1e-51
Identities = 31/193 (16%), Positives = 65/193 (33%), Gaps = 23/193 (11%)
Query: 58 RITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRR 117
+ P +E + + + + ++ G+GKT +I V + + P R
Sbjct: 3 AMGEPDYEVDED---IFRKKRLTIMDLHPGAGKTKRILPSIVREALLRRLR-TLILAPTR 58
Query: 118 VAAMSVAQRVSEEMDCQLGQEVGY-SIRFEDCSSPKTVLKYMTDGMLLREGMSDPMLENY 176
V A + + + G + Y + + + + ++ M +S + NY
Sbjct: 59 VVAAEMEEALR-------GLPIRYQTPAVKSDHTGREIVDLMCHATFTTRLLSSTRVPNY 111
Query: 177 QVILLDEAHERTLATDILMGVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPG 236
+I++DEAH + G + + + + M+AT P
Sbjct: 112 NLIVMDEAHFTDPCSVAARGYIST-RVEMGEAAAIFMTATPPGSTDP----------FPQ 160
Query: 237 RTHPVEIFYTPEP 249
P+E P
Sbjct: 161 SNSPIEDIEREIP 173
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane,
nucleotide-binding, RNA replication, transmembrane,
viral protein; 1.80A {Japanese encephalitis virus} PDB:
2v8o_A 2qeq_A
Length = 459
Score = 163 bits (415), Expect = 2e-47
Identities = 37/186 (19%), Positives = 60/186 (32%), Gaps = 20/186 (10%)
Query: 65 EYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVA 124
+ +L + Q VL GSGKT +I ++ + + A P RV VA
Sbjct: 9 QMGRGSPNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQQRLR-TAVLAPTRV----VA 63
Query: 125 QRVSEEMDCQLGQEVGYSIRF-EDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDE 183
++E + G V Y + ++ M L MS + NY + ++DE
Sbjct: 64 AEMAEALR---GLPVRYQTSAVQREHQGNEIVDVMCHATLTHRLMSPNRVPNYNLFVMDE 120
Query: 184 AHERTLATDILMGVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRTHPVEI 243
AH I + + + M+AT P P+
Sbjct: 121 AHFTD-PASIAARGYIATKVELGEAAAIFMTATPPGTTD----------PFPDSNAPIHD 169
Query: 244 FYTPEP 249
P
Sbjct: 170 LQDEIP 175
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication,
viral replication, nucleotide-binding; 2.10A {Kokobera
virus} PDB: 2v6j_A
Length = 431
Score = 160 bits (407), Expect = 2e-46
Identities = 27/172 (15%), Positives = 62/172 (36%), Gaps = 9/172 (5%)
Query: 76 QNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQL 135
+ + VL G+GKT ++ V + + P RV A + + + E
Sbjct: 1 KRELTVLDLHPGAGKTRRVLPQLVREAVKKRLR-TVILAPTRVVASEMYEALRGE----- 54
Query: 136 GQEVGYSIRFEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILM 195
+ + + ++ +M + + + NY + ++DEAH A+
Sbjct: 55 -PIRYMTPAVQSERTGNEIVDFMCHSTFTMKLLQGVRVPNYNLYIMDEAHFLDPASVAAR 113
Query: 196 GVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRTHPVEIFYTP 247
G ++ + D + M+AT G + + + + P + + +
Sbjct: 114 GYIETRVSMG-DAGAIFMTATPP-GTTEAFPPSNSPIIDEETRIPDKAWNSG 163
Score = 31.3 bits (71), Expect = 0.33
Identities = 7/34 (20%), Positives = 12/34 (35%)
Query: 260 CFTRPNEAKKAADDAKMRFAHIDGDHLTLLNVYH 293
CF PNE ++ ++ G L +
Sbjct: 376 CFDGPNEHLLLENNQEIEVWTRQGQRRVLKPRWL 409
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA
compl protease/ntpase/helicase, hydrolase; 1.95A
{Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4a92_A*
1cu1_A 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A*
3kqh_A 3kqk_A 8ohm_A 2f55_A 1jr6_A 1onb_A
Length = 666
Score = 157 bits (397), Expect = 1e-43
Identities = 37/201 (18%), Positives = 65/201 (32%), Gaps = 16/201 (7%)
Query: 43 TGYPYTPRYHELHRKRITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYS 102
E + PVF + + Q L TGSGK+T++P
Sbjct: 198 VAKAVDFVPVESMETTMRSPVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQG 257
Query: 103 KSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRFEDCSSPKTVLKYMTDGM 162
V P A + +S+ + + +R +P + Y T G
Sbjct: 258 YKVL-----VLNPSVAATLGFGAYMSKAH--GIDPNIRTGVRTITTGAP---VTYSTYGK 307
Query: 163 LLREGMSDPMLENYQVILLDEAHERTLATDILMGVLKEVIKQRADLKLVIMSATLDAGKF 222
L +G Y +I+ DE H T + +G + + + +V+ +AT
Sbjct: 308 FLADGG--CSGGAYDIIICDECHSTDSTTILGIGTVLDQAETAGARLVVLATATPPGSVT 365
Query: 223 QQYFDNAPLMNVPGRTHPVEI 243
P + ++ EI
Sbjct: 366 VP----HPNIEEVALSNTGEI 382
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase,
ATP-binding, reticulum, nucleotidyltransferase,
multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4}
PDB: 2vbc_A 2wzq_A
Length = 618
Score = 152 bits (385), Expect = 4e-42
Identities = 29/191 (15%), Positives = 61/191 (31%), Gaps = 20/191 (10%)
Query: 60 TLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVA 119
+ + + ++ G+GKT +I V + + P RV
Sbjct: 169 ERIGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALKRRLR-TLILAPTRVV 227
Query: 120 AMSVAQRVSEEMDCQLGQEVGY-SIRFEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQV 178
A + + + G + Y + + + + ++ M +S + NY +
Sbjct: 228 AAEMEEALR-------GLPIRYQTPAVKSDHTGREIVDLMCHATFTTRLLSSTRVPNYNL 280
Query: 179 ILLDEAHERTLATDILMGVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRT 238
I++DEAH + G + ++ + + M+AT P
Sbjct: 281 IVMDEAHFTDPCSVAARGYISTRVEMG-EAAAIFMTATPPGSTDP----------FPQSN 329
Query: 239 HPVEIFYTPEP 249
P+E P
Sbjct: 330 SPIEDIEREIP 340
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic
subunit]; helicase, flavivirus, DEAD-BOX, ATPase,
rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP:
c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Length = 440
Score = 148 bits (374), Expect = 1e-41
Identities = 31/182 (17%), Positives = 58/182 (31%), Gaps = 27/182 (14%)
Query: 72 TLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEM 131
+L + VL G+GKT + + + P RV + +
Sbjct: 3 HMLKKGMTTVLDFHPGAGKTRRFLPQILAECARRRLR-TLVLAPTRVVLSEMKEAFH--- 58
Query: 132 DCQLGQEVGYSIR-FEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLA 190
G +V + + F S + V+ M L + + N++VI++DEAH A
Sbjct: 59 ----GLDVKFHTQAFSAHGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFLDPA 114
Query: 191 TDILMGVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRTHPVEIFYTPEPP 250
+ G + + ++M+AT PG +
Sbjct: 115 SIAARGWAAHRARAN-ESATILMTATP-----------------PGTSDEFPHSNGEIED 156
Query: 251 LG 252
+
Sbjct: 157 VQ 158
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3
catalytic subunit; nucleotide-binding, capsid protein;
2.75A {Murray valley encephalitis virus}
Length = 673
Score = 145 bits (367), Expect = 2e-39
Identities = 36/195 (18%), Positives = 62/195 (31%), Gaps = 22/195 (11%)
Query: 62 PVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAM 121
+L + Q VL G+GKT +I ++ + + A P RV A
Sbjct: 226 EEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQKRLR-TAVLAPTRVVAA 284
Query: 122 SVAQRVSEEMDCQLGQEVGYSI--RFEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVI 179
+A+ L + + S ++ M L MS + NY +
Sbjct: 285 EMAE--------ALRGLPVRYLTPAVQREHSGNEIVDVMCHATLTHRLMSPLRVPNYNLF 336
Query: 180 LLDEAHERTLATDILMGVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRTH 239
++DEAH A+ G + ++ + + M+AT P
Sbjct: 337 VMDEAHFTDPASIAARGYIATRVEAG-EAAAIFMTATPPGTSD----------PFPDTNS 385
Query: 240 PVEIFYTPEPPLGAG 254
PV + P
Sbjct: 386 PVHDVSSEIPDRAWS 400
Score = 31.4 bits (71), Expect = 0.41
Identities = 6/34 (17%), Positives = 11/34 (32%)
Query: 260 CFTRPNEAKKAADDAKMRFAHIDGDHLTLLNVYH 293
CF P D+ ++ G+ L +
Sbjct: 618 CFDGPRSNIILEDNNEVEIITRIGERKVLKPRWL 651
>3i4u_A ATP-dependent RNA helicase DHX8; splicing, ATP-binding, hydrolase,
mRNA processing, splicing, nucleotide-binding, nucleus,
phosphoprotein, SPLI; 2.10A {Homo sapiens}
Length = 270
Score = 71.9 bits (177), Expect = 8e-15
Identities = 17/40 (42%), Positives = 24/40 (60%)
Query: 258 PQCFTRPNEAKKAADDAKMRFAHIDGDHLTLLNVYHAFKQ 297
F RP + + AD K +F +GDHLTLL VY+++K
Sbjct: 81 QNVFYRPKDKQALADQKKAKFHQTEGDHLTLLAVYNSWKN 120
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 57.6 bits (138), Expect = 2e-09
Identities = 59/346 (17%), Positives = 101/346 (29%), Gaps = 94/346 (27%)
Query: 1 MSKRRLDVIDPYITKKNREERL------------ATVNASVSTS-------IASNLQVNP 41
+SK +D I I K+ V V + S ++
Sbjct: 46 LSKEEIDHI---IMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQ 102
Query: 42 FTGYPYTPRYHELHRKRI--TLPVFE----YRTE-FMTL------LAQNQCIVLVGETGS 88
T Y E R R+ VF R + ++ L L + +++ G GS
Sbjct: 103 RQPSMMTRMYIE-QRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGS 161
Query: 89 GKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRFEDC 148
GKT C+ Y V C ++ +++ S E ++ Q++ Y I
Sbjct: 162 GKTWVALDVCLSYK-------VQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWT 214
Query: 149 SSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILMGVL-KEVIKQRA- 206
S ++ + +L + +E L +L+ V + A
Sbjct: 215 SRSDHSSNIKLRIHSIQAELRR--------LLKSKPYENCL--LVLLNVQNAKAWN--AF 262
Query: 207 DLK---LVIMSATLDAGKFQQYFDNAPLMNVPGRTHPVEIF----YTPEPPLGA-GPWL- 257
+L L+ T ++ TH TP+ +L
Sbjct: 263 NLSCKILLT---TRFKQ-------VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD 312
Query: 258 --PQCFTRPNEAKK---------AA--DDAKMR---FAHIDGDHLT 287
PQ P E A D + H++ D LT
Sbjct: 313 CRPQDL--PREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLT 356
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta,
contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB:
2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A*
1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A*
1o1g_A*
Length = 783
Score = 44.2 bits (105), Expect = 3e-05
Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 12/63 (19%)
Query: 39 VNPFTGYP-YTPRYHELHR--KRITLP--VFE-----YRTEFMTLLAQNQCIVLVGETGS 88
VNP+ P YTP +R KR P +F Y+ +M +NQ I++ GE+G+
Sbjct: 125 VNPYKWLPVYTPEVVAAYRGKKRSEAPPHIFSISDNAYQ--YMLTDRENQSILITGESGA 182
Query: 89 GKT 91
GKT
Sbjct: 183 GKT 185
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain,
mutant, muscle contraction; HET: ADP; 1.75A
{Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A*
1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A*
1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A*
1jx2_A* 3mjx_A* 2jhr_A* ...
Length = 770
Score = 43.8 bits (104), Expect = 5e-05
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 12/63 (19%)
Query: 39 VNPFTGYP-YTPRYHELHR--KRITLP--VFE-----YRTEFMTLLAQNQCIVLVGETGS 88
VNPF P YT ++ + +R + +F YR M QNQ +++ GE+G+
Sbjct: 126 VNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYR--SMLDDRQNQSLLITGESGA 183
Query: 89 GKT 91
GKT
Sbjct: 184 GKT 186
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM,
protein engineering, structural protein; HET: ADP; 2.80A
{Dictyostelium discoideum} SCOP: k.1.1.1
Length = 1010
Score = 43.1 bits (102), Expect = 7e-05
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 12/63 (19%)
Query: 39 VNPFTGYP-YTPRYHELHR--KRITLP--VFE-----YRTEFMTLLAQNQCIVLVGETGS 88
VNPF P YT ++ + +R + +F YR M QNQ +++ GE+G+
Sbjct: 126 VNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYR--SMLDDRQNQSLLITGESGA 183
Query: 89 GKT 91
GKT
Sbjct: 184 GKT 186
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken,
molecular motor, ATPase, ELC, IQ motif, muscle protein,
ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1
c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Length = 795
Score = 43.0 bits (102), Expect = 9e-05
Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 12/63 (19%)
Query: 39 VNPFTGYP-YTPRYHELHR--KRITLP--VFE-----YRTEFMTLLAQNQCIVLVGETGS 88
+NP+ P Y + + +F Y+ M +NQ I++ GE+G+
Sbjct: 110 INPYEQLPIYGEDIINAYSGQNMGDMDPHIFAVAEEAYK--QMARDERNQSIIVSGESGA 167
Query: 89 GKT 91
GKT
Sbjct: 168 GKT 170
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane,
vanadate, transport, PRE- powerstroke, transition state,
protein transport; HET: ADP; 1.75A {Sus scrofa} PDB:
2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Length = 784
Score = 42.6 bits (101), Expect = 1e-04
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 13/64 (20%)
Query: 39 VNPFTGYP--YTPRYHELHR--KRITLP--VFE-----YRTEFMTLLAQNQCIVLVGETG 87
VNP+ P Y+ + ++ T+P VF +R M +L +Q I++ GE+G
Sbjct: 93 VNPYFDIPKIYSSETIKSYQGKSLGTMPPHVFAIADKAFR--DMKVLKLSQSIIVSGESG 150
Query: 88 SGKT 91
+GKT
Sbjct: 151 AGKT 154
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 42.7 bits (100), Expect = 1e-04
Identities = 30/146 (20%), Positives = 43/146 (29%), Gaps = 38/146 (26%)
Query: 122 SVAQRVSEEMDCQLGQEVGYSIRFEDCSSPK--TVLKYMTDGMLLREGMSDPMLENY--- 176
AQ V D G+SI ++P T+ G +RE S + E
Sbjct: 1640 KAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDG 1699
Query: 177 ---QVILLDEAHERTLATDILMGVLKEVIK-----QRADLKLVIMS-ATL----DAGKFQ 223
+ E +E + T K ++ Q A L +M A G
Sbjct: 1700 KLKTEKIFKEINEHS--TSYTFRSEKGLLSATQFTQPA---LTLMEKAAFEDLKSKGLIP 1754
Query: 224 Q--YFDNAPLMNVPGRTHPV-EIFYT 246
F A G H + E Y
Sbjct: 1755 ADATF--A------G--HSLGE--YA 1768
Score = 40.4 bits (94), Expect = 6e-04
Identities = 47/263 (17%), Positives = 69/263 (26%), Gaps = 109/263 (41%)
Query: 32 SIASNLQVNP------FTGYP-------YTPRYHE--LHRKRITLPVFEYRTEFMTLLAQ 76
SI + NP F G Y+ E + K T +F+ E T
Sbjct: 1660 SILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTS--- 1716
Query: 77 NQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQ-RVSEEM---- 131
E G TQ TQP + M A +
Sbjct: 1717 ---YTFRSEKGLLSATQF------------------TQPA-LTLMEKAAFEDLKSKGLIP 1754
Query: 132 -DCQ-----LGQEVGYS--------IRFED-------------CSSPKTVLKYMTDGML- 163
D LG E Y+ + E + P+ L GM+
Sbjct: 1755 ADATFAGHSLG-E--YAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIA 1811
Query: 164 -----LREGMSDPMLE-----------------NY-----QVILLDEA-HERTLATDILM 195
+ S L+ NY Q + A R A D +
Sbjct: 1812 INPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVA---AGDLR--ALDTVT 1866
Query: 196 GVLKEVIKQRADLKLVIMSATLD 218
VL + Q+ D+ + S +L+
Sbjct: 1867 NVLNFIKLQKIDIIELQKSLSLE 1889
Score = 38.9 bits (90), Expect = 0.002
Identities = 51/258 (19%), Positives = 89/258 (34%), Gaps = 87/258 (33%)
Query: 1 MSKRRLDVIDPYITKKNREERLATVNASVST----SIASNLQVN-P--F--TGYPYTPRY 51
M L + + +T++ ++ + N+ + I+ L VN +G P
Sbjct: 338 M----LSISN--LTQEQVQDYVNKTNSHLPAGKQVEIS--L-VNGAKNLVVSGPP----- 383
Query: 52 HELHRKRITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVA 111
L+ +TL R +Q ++IP +S+ K
Sbjct: 384 QSLYGLNLTL-----RKAKAPS-GLDQ-------------SRIP-----FSE---RKLKF 416
Query: 112 CTQ--PRRVAA-------MSVAQRVSEEMDCQLGQEVGYSIRFEDCSSPKTVLKYMT-DG 161
+ P VA+ + + +++++ + S +D P V Y T DG
Sbjct: 417 SNRFLP--VASPFHSHLLVPASDLINKDL-----VKNNVSFNAKDIQIP--V--YDTFDG 465
Query: 162 MLLREGMSDPMLEN-YQVILLDEAH-ERTL---ATDIL---------MGVLKEVIKQRAD 207
LR +S + E I+ E T AT IL +GVL K
Sbjct: 466 SDLRV-LSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTG 524
Query: 208 LKLVIMSATLDAGKFQQY 225
++ VI++ TLD Y
Sbjct: 525 VR-VIVAGTLDINPDDDY 541
Score = 31.6 bits (71), Expect = 0.36
Identities = 26/180 (14%), Positives = 57/180 (31%), Gaps = 49/180 (27%)
Query: 6 LDVIDPYITKKNR---EERLATVNASVSTSIASNLQVNPFTGYPYTPRYHELHRKRITLP 62
L++++ ++ + ++ L + +S + +Q Y T +
Sbjct: 213 LNILE-WLENPSNTPDKDYLLS--IPISCPLIGVIQ---LAHYVVTAKLLGFTPG----- 261
Query: 63 VFEYRTEFMTLLAQNQCIV---LVGETGSGKT-TQIPQWCVEYSKSVGAKAVACTQ--PR 116
E R+ +Q +V + ET S ++ + + +G V C + P
Sbjct: 262 --ELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIG---VRCYEAYPN 316
Query: 117 RVAAMSVAQRVSEEMDCQLGQEVGYSIRFEDCSSPKTVLKYMTDGMLLREGMSDPMLENY 176
S+ + D E E SP ML ++ +++Y
Sbjct: 317 TSLPPSILE------DSL---ENN-----EGVPSP----------MLSISNLTQEQVQDY 352
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A
{Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Length = 995
Score = 42.3 bits (100), Expect = 2e-04
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 12/63 (19%)
Query: 39 VNPFTGYP-YTPRYHELHR--KRITLP--VFE-----YRTEFMTLLAQNQCIVLVGETGS 88
+NP+ P YT E++R KR +P V+ YR M ++Q I+ GE+G+
Sbjct: 100 INPYKQLPIYTEAIVEMYRGKKRHEVPPHVYAVTEGAYR--SMLQDREDQSILCTGESGA 157
Query: 89 GKT 91
GKT
Sbjct: 158 GKT 160
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter
domain, contractIle protein; HET: ADP; 3.00A
{Dictyostelium discoideum} SCOP: c.37.1.9
Length = 697
Score = 41.8 bits (99), Expect = 2e-04
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 12/63 (19%)
Query: 39 VNPFTGYP-YTPRYHELHR--KRITLP--VFE-----YRTEFMTLLAQNQCIVLVGETGS 88
NPF Y + + + +P ++ YR+ M +NQC+++ GE+G+
Sbjct: 48 TNPFKNLNIYKESDIKAYNGRYKYEMPPHMYALANDAYRS--MRQSQENQCVIISGESGA 105
Query: 89 GKT 91
GKT
Sbjct: 106 GKT 108
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of
motor, contractIle PROT; HET: ADP; 2.30A {Argopecten
irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A*
1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A*
2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A*
2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Length = 837
Score = 40.8 bits (96), Expect = 5e-04
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 12/66 (18%)
Query: 36 NLQVNPFTGYP-YTPRYHELHR--KRITLP--VFE-----YRTEFMTLLAQNQCIVLVGE 85
+ VNP+ P YT +R ++ +P +F Y+ M +NQ ++ GE
Sbjct: 120 CIAVNPYRRLPIYTDSVIAKYRGKRKTEIPPHLFSVADNAYQ--NMVTDRENQSCLITGE 177
Query: 86 TGSGKT 91
+G+GKT
Sbjct: 178 SGAGKT 183
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 37.0 bits (86), Expect = 0.007
Identities = 19/81 (23%), Positives = 35/81 (43%), Gaps = 13/81 (16%)
Query: 39 VNPFTGYP-YTPRYHELH--RKRITLP--VFE-----YRTEFMTLLAQNQCIVLVGETGS 88
+NP+ P Y + + + +F Y+ M +NQ I++ GE+G+
Sbjct: 110 INPYEQLPIYGEDIINAYSGQNMGDMDPHIFAVAEEAYK--QMARDERNQSIIVSGESGA 167
Query: 89 GKTTQIPQWCVEYSKSVGAKA 109
GKT ++ + Y +V A
Sbjct: 168 GKTVSA-KYAMRYFATVSGSA 187
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin
subfragment 2, heavy meromyosin, essential light chain,
motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP:
i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 36.7 bits (85), Expect = 0.008
Identities = 18/64 (28%), Positives = 34/64 (53%), Gaps = 12/64 (18%)
Query: 39 VNPFTGYP-YTPRYHELH--RKRITLP--VFE-----YRTEFMTLLAQNQCIVLVGETGS 88
+NP+ P Y+ + +++ +KR +P ++ YR M ++Q I+ GE+G+
Sbjct: 123 INPYKQLPIYSEKIIDMYKGKKRHEMPPHIYAIADTAYR--SMLQDREDQSILCTGESGA 180
Query: 89 GKTT 92
GKT
Sbjct: 181 GKTE 184
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase,
translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Length = 538
Score = 33.8 bits (78), Expect = 0.063
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 76 QNQCIVLVGETGSGKTT 92
N + ++G+ G GKTT
Sbjct: 24 NNTILGVLGKNGVGKTT 40
Score = 31.5 bits (72), Expect = 0.30
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 74 LAQNQCIVLVGETGSGKTT 92
+ + I ++G G GKTT
Sbjct: 291 AKEGEIIGILGPNGIGKTT 309
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur
cluster, adenosine diphosphate, nucleotide-binding; HET:
ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Length = 607
Score = 33.8 bits (78), Expect = 0.065
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 73 LLAQNQCIVLVGETGSGKTT 92
++ + +VG G+GKTT
Sbjct: 113 IVKDGMVVGIVGPNGTGKTT 132
Score = 31.1 bits (71), Expect = 0.43
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 74 LAQNQCIVLVGETGSGKTT 92
+ + + I +VG G GKTT
Sbjct: 379 IRKGEVIGIVGPNGIGKTT 397
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
microtubles, motor protein; HET: ADP SPM; 2.81A
{Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
Length = 3245
Score = 34.1 bits (78), Expect = 0.068
Identities = 9/39 (23%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Query: 67 RTEFM--TLLAQNQCIVLVGETGSGKTTQIPQWCVEYSK 103
R + L++++ ++L G GSGKT + +
Sbjct: 1292 RHVDVLHAWLSEHRPLILCGPPGSGKTMTLTSTLRAFPD 1330
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET:
ATP; NMR {Saccharomyces cerevisiae}
Length = 608
Score = 33.8 bits (78), Expect = 0.073
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 78 QCIVLVGETGSGKTT 92
Q + LVG G GK+T
Sbjct: 104 QVLGLVGTNGIGKST 118
Score = 31.2 bits (71), Expect = 0.42
Identities = 8/19 (42%), Positives = 15/19 (78%)
Query: 74 LAQNQCIVLVGETGSGKTT 92
+ ++ +V++GE G+GKTT
Sbjct: 375 FSDSEILVMMGENGTGKTT 393
>1p9r_A General secretion pathway protein E; bacterial type II secretion
system cytoplasmic protein - GSPE, putative ATPase/ ATP
binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11
PDB: 1p9w_A*
Length = 418
Score = 33.3 bits (77), Expect = 0.075
Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Query: 65 EYRTEFMTLLAQNQCIVLV-GETGSGKTT 92
F L+ + I+LV G TGSGK+T
Sbjct: 154 HNHDNFRRLIKRPHGIILVTGPTGSGKST 182
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A
{Brucella suis}
Length = 361
Score = 33.1 bits (76), Expect = 0.11
Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Query: 69 EFMTLLAQNQC-IVLVGETGSGKTT 92
F+ Q + IV+ GETGSGKTT
Sbjct: 166 SFLRRAVQLERVIVVAGETGSGKTT 190
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion,
hydrolas binding complex; 2.40A {Helicobacter pylori}
SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Length = 330
Score = 32.4 bits (74), Expect = 0.17
Identities = 8/25 (32%), Positives = 12/25 (48%), Gaps = 1/25 (4%)
Query: 69 EFMTLLAQNQC-IVLVGETGSGKTT 92
+ +++ G TGSGKTT
Sbjct: 162 SAIKDGIAIGKNVIVCGGTGSGKTT 186
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain
cytoplasmic; motor protein, AAA+ protein, ASCE protein,
P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma
japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Length = 2695
Score = 32.5 bits (74), Expect = 0.18
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 73 LLAQNQCIVLVGETGSGKTT 92
+ Q ++LVG+ G GKT
Sbjct: 919 MQKTQQALILVGKAGCGKTA 938
Score = 31.3 bits (71), Expect = 0.49
Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Query: 67 RTEFM--TLLAQNQCIVLVGETGSGKTTQI 94
+ E + LL + I+L G GSGKT +
Sbjct: 1255 KHEKIFYDLLNSKRGIILCGPPGSGKTMIM 1284
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein
transport, biosynthetic protein; HET: GNP; 3.00A
{Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Length = 296
Score = 32.0 bits (73), Expect = 0.22
Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 80 IVLVGETGSGKTTQIPQWCVEYSKSVGAK-AVACTQPRRVAA 120
IVL G TG+GKTT + + K A T R+AA
Sbjct: 108 IVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAA 149
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase,
hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB:
2oaq_1
Length = 511
Score = 32.0 bits (73), Expect = 0.24
Identities = 23/97 (23%), Positives = 43/97 (44%), Gaps = 19/97 (19%)
Query: 4 RRLDVIDPYITKKNREERLAT---VNASVSTSIA---SNLQVNPFTGYPYTPRYHELHRK 57
+ + + +P + + L + A+ T + S+ + FT P TP +L K
Sbjct: 190 KHISIANPIV-----DATLPDGSRLQATFGTEVTPRGSSFTIRKFTIEPLTP--IDLIEK 242
Query: 58 R-ITLPVFEYRTEFMTLLAQNQC-IVLVGETGSGKTT 92
+ V ++ L +++ ++VGET SGKTT
Sbjct: 243 GTVPSGV----LAYLWLAIEHKFSAIVVGETASGKTT 275
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA
repair, DNA recombina hydrolase; 2.90A {Pyrococcus
furiosus} SCOP: c.37.1.19 c.37.1.19
Length = 494
Score = 31.7 bits (71), Expect = 0.27
Identities = 35/197 (17%), Positives = 71/197 (36%), Gaps = 24/197 (12%)
Query: 57 KRITLPVFEYRTE-FMTLLAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAV--ACT 113
+R + Y+ + N ++V TG GKT G K + A T
Sbjct: 4 RRDLIQPRIYQEVIYAKCKETN--CLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPT 61
Query: 114 QPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRFEDCSSPKTVLK--------YMTDGMLLR 165
+P V Q +E + SP+ K T +
Sbjct: 62 KP------LVLQ-HAESFRRLFNLPPEKIVALTGEKSPEERSKAWARAKVIVATPQTIEN 114
Query: 166 EGMSDPM-LENYQVILLDEAHERTLATDILMGVLKEVIKQRADLKLVIMSATL--DAGKF 222
+ ++ + LE+ +I+ DEAH R + + + +E +Q + ++ ++A+ K
Sbjct: 115 DLLAGRISLEDVSLIVFDEAH-RAVGNYAYVFIAREYKRQAKNPLVIGLTASPGSTPEKI 173
Query: 223 QQYFDNAPLMNVPGRTH 239
+ +N + ++ R+
Sbjct: 174 MEVINNLGIEHIEYRSE 190
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis,
hydrolyase/translation complex; HET: ADP; 1.90A
{Pyrococcus furiosus}
Length = 538
Score = 31.9 bits (73), Expect = 0.30
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 74 LAQNQCIVLVGETGSGKTT 92
+ + + I +VG G GKTT
Sbjct: 309 IKKGEVIGIVGPNGIGKTT 327
Score = 31.1 bits (71), Expect = 0.53
Identities = 6/20 (30%), Positives = 13/20 (65%)
Query: 73 LLAQNQCIVLVGETGSGKTT 92
++ + + +VG G+GK+T
Sbjct: 43 VVKEGMVVGIVGPNGTGKST 62
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292;
mixed alpha-beta protein, rossman fold, signaling
protein, transferase; 1.40A {Aquifex aeolicus} SCOP:
c.37.1.11
Length = 178
Score = 30.8 bits (69), Expect = 0.31
Identities = 24/144 (16%), Positives = 49/144 (34%), Gaps = 35/144 (24%)
Query: 80 IVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEV 139
I++ GE G GKTT + K + +R E D + +
Sbjct: 3 IIITGEPGVGKTTLV-------------KKIVERLGKRAIGF----WTEEVRDPETKKRT 45
Query: 140 GYSIR----------FEDCSSPKTVLKYMTDG--------MLLREGMSDPMLENYQVILL 181
G+ I + +S K V Y + +L + + +VI++
Sbjct: 46 GFRIITTEGKKKIFSSKFFTSKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIII 105
Query: 182 DEAHERTLATDILMGVLKEVIKQR 205
DE + L + ++++++
Sbjct: 106 DEIGKMELFSKKFRDLVRQIMHDP 129
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR
complex, HMR, HML, TELO AAA+ domain, structural,
nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Length = 318
Score = 31.4 bits (70), Expect = 0.31
Identities = 23/174 (13%), Positives = 53/174 (30%), Gaps = 22/174 (12%)
Query: 76 QNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSV--AQRVSEEMDC 133
QN+ + S K + E S K + + A+ + + E++
Sbjct: 44 QNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWF 103
Query: 134 QLGQEVGYSIRFEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDI 193
+ +E L+ L + P + + ++L + E L+ I
Sbjct: 104 AISKEN---------LCGDISLE-----ALNFYITNVPKAKKRKTLILIQNPENLLSEKI 149
Query: 194 LMGVLKEVIKQRADLKLVIMSATLDAGKFQQYFDNAPLMNVPGRTHPVEIFYTP 247
L K + + + L ++ + ++ + + H EI
Sbjct: 150 LQYFEKWISSKNSKLSIICVGGHNV--TIREQINI----MPSLKAHFTEIKLNK 197
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme
function initiative, EFI, STRU genomics, transferase;
1.60A {Janibacter SP}
Length = 200
Score = 30.8 bits (69), Expect = 0.32
Identities = 12/43 (27%), Positives = 20/43 (46%)
Query: 50 RYHELHRKRITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTT 92
+H H + L + M + +V++G +GSGKTT
Sbjct: 2 HHHHHHSSGVDLGTENLYFQSMMTGEPTRHVVVMGVSGSGKTT 44
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION
channel, transport protein, casse protein; 2.00A {Homo
sapiens} PDB: 2onj_A* 2hyd_A
Length = 578
Score = 31.0 bits (71), Expect = 0.51
Identities = 6/15 (40%), Positives = 10/15 (66%)
Query: 78 QCIVLVGETGSGKTT 92
+ + VG +G GK+T
Sbjct: 368 ETVAFVGMSGGGKST 382
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic
peptide, membrane protein; 3.80A {Mus musculus} PDB:
3g61_A* 3g60_A*
Length = 1284
Score = 30.8 bits (70), Expect = 0.63
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 76 QNQCIVLVGETGSGKTTQI 94
+ Q + LVG +G GK+T +
Sbjct: 1058 KGQTLALVGSSGCGKSTVV 1076
Score = 28.1 bits (63), Expect = 4.9
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 77 NQCIVLVGETGSGKTT 92
Q + LVG +G GK+T
Sbjct: 416 GQTVALVGNSGCGKST 431
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase,
tramp, exosome, DEAD, nucleotide-binding; HET: ADP;
2.90A {Saccharomyces cerevisiae}
Length = 1010
Score = 30.9 bits (69), Expect = 0.67
Identities = 30/151 (19%), Positives = 60/151 (39%), Gaps = 20/151 (13%)
Query: 74 LAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDC 133
+ + + +++ T +GKT + ++ + S + + + P + A+S Q+ E
Sbjct: 98 IDRGESVLVSAHTSAGKTV-VAEYAIAQSLKNKQRVIYTS-PIK--ALS-NQKYREL--L 150
Query: 134 QLGQEVGYSIRFEDCSSPKTVLKYMT----DGMLLREGMSDPMLENYQVILLDEAHERTL 189
+VG + +P MT ML R ++ ++ DE H
Sbjct: 151 AEFGDVGLMTG-DITINPDAGCLVMTTEILRSMLYR---GSEVMREVAWVIFDEVH---Y 203
Query: 190 ATDILMGVLKE--VIKQRADLKLVIMSATLD 218
D GV+ E +I ++ V +SAT+
Sbjct: 204 MRDKERGVVWEETIILLPDKVRYVFLSATIP 234
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288;
multidrug transporter, transport protein; HET: ANP;
2.90A {Thermotoga maritima}
Length = 598
Score = 30.6 bits (70), Expect = 0.67
Identities = 11/17 (64%), Positives = 13/17 (76%)
Query: 78 QCIVLVGETGSGKTTQI 94
Q + LVG TGSGKTT +
Sbjct: 382 QKVALVGPTGSGKTTIV 398
>3p9d_E T-complex protein 1 subunit epsilon; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_e*
Length = 562
Score = 30.6 bits (70), Expect = 0.72
Identities = 20/83 (24%), Positives = 31/83 (37%), Gaps = 21/83 (25%)
Query: 124 AQRVSEEMDCQLGQEVGYSIRFEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDE 183
R+ E+ + G + E KTV T +R N + +DE
Sbjct: 377 CSRIYEQ---EFGTTKDRMLIIEQSKETKTV----T--CFVRGS-------NKMI--VDE 418
Query: 184 AHERTLATDILMGVLKEVIKQRA 206
A ER L D L V++ ++K
Sbjct: 419 A-ERAL-HDSLC-VVRNLVKDSR 438
>3iyg_E T-complex protein 1 subunit; TRIC/CCT, asymmetric, cryo-EM, subunit
arrangement, acetylation, ATP-binding, chaperone,
cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Length = 515
Score = 30.6 bits (70), Expect = 0.76
Identities = 19/83 (22%), Positives = 33/83 (39%), Gaps = 21/83 (25%)
Query: 124 AQRVSEEMDCQLGQEVGYSIRFEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDE 183
A V E G + E C + + V T + +R G N + ++E
Sbjct: 334 AGLVKEI---SFGTTKDKMLVIEQCKNSRAV----T--IFIRGG-------NKMI--IEE 375
Query: 184 AHERTLATDILMGVLKEVIKQRA 206
A +R+L D L V++ +I+
Sbjct: 376 A-KRSL-HDALC-VIRNLIRDNR 395
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase,
shikimat ATP binding, chloroplast, transferase; 2.35A
{Arabidopsis thaliana}
Length = 250
Score = 30.1 bits (68), Expect = 0.78
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 67 RTEFMTLLAQNQCIVLVGETGSGKTT 92
+ E + + + LVG GSGKTT
Sbjct: 38 KAEEVKPYLNGRSMYLVGMMGSGKTT 63
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.1 bits (64), Expect = 0.90
Identities = 10/38 (26%), Positives = 17/38 (44%), Gaps = 16/38 (42%)
Query: 199 KEVIKQ-RADLKLVIMSATLDAGKFQQYF-DNAPLMNV 234
K+ +K+ +A LKL Y D+AP + +
Sbjct: 19 KQALKKLQASLKL--------------YADDSAPALAI 42
>2wbm_A MTHSBDS, ribosome maturation protein SDO1 homolog;
shwachman-bodian-diamond syndrome protein; 1.75A
{Methanothermobacter thermautotrophicusorganism_taxid}
Length = 252
Score = 29.6 bits (66), Expect = 0.96
Identities = 10/47 (21%), Positives = 17/47 (36%), Gaps = 1/47 (2%)
Query: 3 KRRLDVIDPYITKKNREERLATVNASVSTSIASNLQVNPFTGYPYTP 49
L +T + R + + + IA +NP G P+ P
Sbjct: 98 PVILRRGTIQLTAEQRRQMIEDKRLKIINKIAREA-INPQNGLPHPP 143
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter,
lipid flippase, hydrolase, inner membrane, lipid
transport, membrane; 5.50A {Vibrio cholerae}
Length = 582
Score = 29.9 bits (68), Expect = 1.2
Identities = 8/15 (53%), Positives = 12/15 (80%)
Query: 78 QCIVLVGETGSGKTT 92
+ + LVG +GSGK+T
Sbjct: 370 KTVALVGRSGSGKST 384
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold,
winged-helix-turn-helix, antiparallel-coiled-COI domain,
ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces
cerevisiae}
Length = 1108
Score = 29.8 bits (66), Expect = 1.2
Identities = 30/151 (19%), Positives = 60/151 (39%), Gaps = 20/151 (13%)
Query: 74 LAQNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDC 133
+ + + +++ T +GKT + ++ + S + + + P + A+S Q+ E
Sbjct: 196 IDRGESVLVSAHTSAGKTV-VAEYAIAQSLKNKQRVIYTS-PIK--ALS-NQKYREL--L 248
Query: 134 QLGQEVGYSIRFEDCSSPKTVLKYMT----DGMLLREGMSDPMLENYQVILLDEAHERTL 189
+VG + +P MT ML R ++ ++ DE H
Sbjct: 249 AEFGDVGLMTG-DITINPDAGCLVMTTEILRSMLYR---GSEVMREVAWVIFDEVH---Y 301
Query: 190 ATDILMGVLKE--VIKQRADLKLVIMSATLD 218
D GV+ E +I ++ V +SAT+
Sbjct: 302 MRDKERGVVWEETIILLPDKVRYVFLSATIP 332
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta
protein, structural genomics, PSI-2; 2.70A
{Staphylococcus epidermidis atcc 12228}
Length = 340
Score = 29.5 bits (67), Expect = 1.4
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 71 MTLLAQNQCIVLVGETGSGKT 91
MT + + IV+VG T SGKT
Sbjct: 1 MTEMTKPFLIVIVGPTASGKT 21
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase;
NMR {Homo sapiens} SCOP: c.37.1.11
Length = 189
Score = 28.9 bits (64), Expect = 1.4
Identities = 22/156 (14%), Positives = 49/156 (31%), Gaps = 10/156 (6%)
Query: 79 CIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQE 138
+ L G G GKTT I + S T+ R + V + G
Sbjct: 3 HVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDV-VTLSGTRGPL 61
Query: 139 VGYSIRFEDCSSPKTVLKYMTD-------GMLLREGMSDPMLENYQVILLDEAHERTLAT 191
+ V +Y+ D + + +V ++DE + L +
Sbjct: 62 SRVGLEPPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFS 121
Query: 192 DILMGVLKEVIKQRADLKLVIMSATLDAGKFQQYFD 227
+ + +++ + +++ + + GK +
Sbjct: 122 QLFIQAVRQTLS--TPGTIILGTIPVPKGKPLALVE 155
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter,
lipid flippase, hydrolase, inner membrane, lipid
transport, membrane; HET: ANP; 3.70A {Salmonella
typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A*
3b5z_A* 3b5w_A
Length = 582
Score = 29.5 bits (67), Expect = 1.5
Identities = 8/15 (53%), Positives = 12/15 (80%)
Query: 78 QCIVLVGETGSGKTT 92
+ + LVG +GSGK+T
Sbjct: 370 KTVALVGRSGSGKST 384
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases,
center for structural genomics of infectious DISE
ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1
biovar eltor} PDB: 3n2i_A*
Length = 236
Score = 29.2 bits (66), Expect = 1.6
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 80 IVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACT 113
IV+ G G+GK+T I Q VE + G + T
Sbjct: 30 IVIEGLEGAGKSTAI-QVVVETLQQNGIDHITRT 62
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon;
HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB:
3bb1_A*
Length = 270
Score = 29.1 bits (65), Expect = 1.6
Identities = 5/13 (38%), Positives = 11/13 (84%)
Query: 80 IVLVGETGSGKTT 92
I+++G+ G GK++
Sbjct: 42 ILVMGKGGVGKSS 54
>3iyg_B T-complex protein 1 subunit beta; TRIC/CCT, asymmetric, cryo-EM,
subunit arrangement, acetylation, ATP-binding,
chaperone, cytoplasm, isopeptide bond; 4.00A {Bos
taurus} PDB: 3ktt_B 4a0o_A 4a0v_A 4a0w_A 4a13_A
Length = 513
Score = 29.0 bits (66), Expect = 1.8
Identities = 20/83 (24%), Positives = 33/83 (39%), Gaps = 23/83 (27%)
Query: 124 AQRVSEEMDCQLGQEVGYSIRFEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDE 183
+ + E +G++ I F + + T ++LR Q+ LDE
Sbjct: 333 CKLIEEV---MIGED--KLIHFSGVALGEAC----T--IVLRGA-------TQQI--LDE 372
Query: 184 AHERTLATDILMGVLKEVIKQRA 206
A ER+L D L VL + +K
Sbjct: 373 A-ERSL-HDALC-VLAQTVKDSR 392
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins
(A/B), protein binding, transferase, phosphotransferase;
HET: ADP; 1.76A {Homo sapiens} PDB: 3iik_A 3iil_A*
3iim_A* 1rkb_A
Length = 180
Score = 28.5 bits (63), Expect = 1.9
Identities = 23/114 (20%), Positives = 36/114 (31%), Gaps = 21/114 (18%)
Query: 80 IVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLG--Q 137
I+L G G GKTT E + G K + ++ E G +
Sbjct: 14 ILLTGTPGVGKTTL----GKELASKSGLKYINVGD------------LAREEQLYDGYDE 57
Query: 138 EVGYSIRFEDCSSPKTVLKYMTDGMLLREGMSDPMLENY--QVILLDEAHERTL 189
E I ED + + G+++ D E + V +L L
Sbjct: 58 EYDCPILDEDRVVDELDNQMREGGVIVDYHGCDFFPERWFHIVFVLR-TDTNVL 110
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC,
coiled coil, GTP- binding, nucleotide-binding, immune
system; HET: GDP; 2.15A {Homo sapiens}
Length = 239
Score = 28.8 bits (64), Expect = 2.0
Identities = 9/15 (60%), Positives = 12/15 (80%)
Query: 80 IVLVGETGSGKTTQI 94
IVLVG+TG+GK+
Sbjct: 32 IVLVGKTGAGKSATG 46
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt
transport, TM02 hydrolase, inner membrane, membrane,
nucleotide-binding; 2.30A {Thermotoga maritima}
Length = 266
Score = 28.7 bits (65), Expect = 2.1
Identities = 8/17 (47%), Positives = 14/17 (82%)
Query: 76 QNQCIVLVGETGSGKTT 92
+ +C+++ G TGSGK+T
Sbjct: 32 EGECLLVAGNTGSGKST 48
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP;
2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB:
3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A*
3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Length = 525
Score = 29.1 bits (65), Expect = 2.2
Identities = 7/31 (22%), Positives = 12/31 (38%)
Query: 80 IVLVGETGSGKTTQIPQWCVEYSKSVGAKAV 110
++ G +G+GKT Q+ V
Sbjct: 42 TLVSGTSGTGKTLFSIQFLYNGIIEFDEPGV 72
>3iyg_H T-complex protein 1 subunit ETA; TRIC/CCT, asymmetric, cryo-EM,
subunit arrangement, acetylation, ATP-binding,
chaperone, cytoplasm, isopeptide bond; 4.00A {Bos
taurus}
Length = 515
Score = 29.0 bits (66), Expect = 2.2
Identities = 22/83 (26%), Positives = 33/83 (39%), Gaps = 23/83 (27%)
Query: 124 AQRVSEEMDCQLGQEVGYSIRFEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDE 183
Q E Q+G E F C KT T ++LR G Q ++E
Sbjct: 336 CQVFEET---QIGGE--RYNFFTGCPKAKTC----T--IILRGG-------AEQF--MEE 375
Query: 184 AHERTLATDILMGVLKEVIKQRA 206
ER+L D +M +++ IK +
Sbjct: 376 T-ERSL-HDAIM-IVRRAIKNDS 395
>3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM,
subunit arrangement, acetylation, ATP-binding,
chaperone, cytoplasm, isopeptide bond; 4.00A {Bos
taurus}
Length = 529
Score = 29.1 bits (66), Expect = 2.2
Identities = 17/83 (20%), Positives = 36/83 (43%), Gaps = 23/83 (27%)
Query: 124 AQRVSEEMDCQLGQEVGYSIRFEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDE 183
A+ V +E ++ + I ++ + + + ++LR N + DE
Sbjct: 342 AEEVVQE---RICDD--ELILIKNTKARTSA----S--VILRGA-------NDFM--CDE 381
Query: 184 AHERTLATDILMGVLKEVIKQRA 206
ER+L D L V+K V++ ++
Sbjct: 382 M-ERSL-HDALC-VVKRVLESKS 401
>3p9d_A T-complex protein 1 subunit alpha; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_a*
Length = 559
Score = 28.7 bits (65), Expect = 2.4
Identities = 16/83 (19%), Positives = 28/83 (33%), Gaps = 23/83 (27%)
Query: 124 AQRVSEEMDCQLGQEVGYSIRFEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDE 183
V + + + I + S + + ++LR N LDE
Sbjct: 358 CDEVVQA---KFSDD--ECILIKGTSKHSSS----S--IILRGA-------NDYS--LDE 397
Query: 184 AHERTLATDILMGVLKEVIKQRA 206
ER+L D L V+K ++
Sbjct: 398 M-ERSL-HDSLS-VVKRTLESGN 417
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB;
ABC-transporter, transport protein; HET: ADP; 1.60A
{Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A*
2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Length = 247
Score = 28.2 bits (64), Expect = 2.6
Identities = 8/15 (53%), Positives = 12/15 (80%)
Query: 78 QCIVLVGETGSGKTT 92
+ I +VG +GSGK+T
Sbjct: 36 EVIGIVGRSGSGKST 50
>3p9d_B T-complex protein 1 subunit beta; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_b*
Length = 527
Score = 28.6 bits (65), Expect = 2.7
Identities = 21/83 (25%), Positives = 33/83 (39%), Gaps = 23/83 (27%)
Query: 124 AQRVSEEMDCQLGQEVGYSIRFEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDE 183
+ E LG++ ++F C + + T ++LR Q LDE
Sbjct: 340 CDVIEEI---MLGEQ--PFLKFSGCKAGEAC----T--IVLRGA-------TDQT--LDE 379
Query: 184 AHERTLATDILMGVLKEVIKQRA 206
A ER+L D L VL + K+
Sbjct: 380 A-ERSL-HDALS-VLSQTTKETR 399
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase
activation, cytochrome C, procaspase-9, A nucleotide,
cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A*
3iyt_A* 3iza_A*
Length = 1249
Score = 28.6 bits (64), Expect = 2.7
Identities = 7/39 (17%), Positives = 14/39 (35%), Gaps = 8/39 (20%)
Query: 62 PVFEYRTEFMTLLAQ--------NQCIVLVGETGSGKTT 92
+F R + + + Q + + G G GK+
Sbjct: 124 VIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSV 162
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC,
mitosis, GDP, C cycle, cell division, GTP-binding,
nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB:
2qa5_A* 3ftq_A*
Length = 301
Score = 28.6 bits (63), Expect = 2.8
Identities = 8/16 (50%), Positives = 13/16 (81%)
Query: 79 CIVLVGETGSGKTTQI 94
+++VGE+G GK+T I
Sbjct: 20 TLMVVGESGLGKSTLI 35
>1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR
folding, ATPase, chaperonin; 2.60A {Thermoplasma
acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB:
1a6e_B* 1e0r_B
Length = 543
Score = 28.7 bits (65), Expect = 2.8
Identities = 25/105 (23%), Positives = 46/105 (43%), Gaps = 23/105 (21%)
Query: 102 SKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRFEDCSSPKTVLKYMTDG 161
+K+ GA V+ + + A+RV + ++G++ Y C +PK V +
Sbjct: 323 AKATGASIVSTIDEISSSDLGTAERVEQV---KVGED--YMTFVTGCKNPKAV----S-- 371
Query: 162 MLLREGMSDPMLENYQVILLDEAHERTLATDILMGVLKEVIKQRA 206
+L+R V +DE ER++ TD L V+ ++ A
Sbjct: 372 ILVRGE-------TEHV--VDEM-ERSI-TDSLH-VVASALEDGA 404
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function;
HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Length = 251
Score = 28.3 bits (63), Expect = 2.9
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 80 IVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACT 113
++L G TG+GKTT Q+ + ++ G V T
Sbjct: 33 VLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVT 66
>3aq1_B Thermosome subunit; group II chaperonin, protein folding,
chaperone; 2.75A {Methanococcoides burtonii}
Length = 500
Score = 28.7 bits (65), Expect = 2.9
Identities = 22/105 (20%), Positives = 33/105 (31%), Gaps = 23/105 (21%)
Query: 102 SKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRFEDCSSPKTVLKYMTDG 161
SK GA + + A V E+ ++ C + K V T
Sbjct: 276 SKVTGATIIQDLDQITTEDVGTAGLVEEK---EVRGG--KMTYVTGCQNSKAV----T-- 324
Query: 162 MLLREGMSDPMLENYQVILLDEAHERTLATDILMGVLKEVIKQRA 206
+LL G V +D + L D L V+ VI+
Sbjct: 325 VLLHGG-------TEHV--VDSL-DHAL-NDALH-VVGVVIEDGK 357
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold,
coiled-coils, ATPase, exonuclease, endonucle binding,
DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB:
3qkr_A*
Length = 203
Score = 28.0 bits (63), Expect = 2.9
Identities = 5/12 (41%), Positives = 11/12 (91%)
Query: 81 VLVGETGSGKTT 92
+++G+ GSGK++
Sbjct: 27 LIIGQNGSGKSS 38
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and
permease protein; asymmetric dimer, tetramer,
P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus
lactis} SCOP: c.37.1.12
Length = 243
Score = 28.2 bits (64), Expect = 3.0
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 77 NQCIVLVGETGSGKTT 92
N I G +G GK+T
Sbjct: 28 NSIIAFAGPSGGGKST 43
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication;
1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB:
1f2u_A* 1us8_A*
Length = 149
Score = 27.7 bits (62), Expect = 3.2
Identities = 5/12 (41%), Positives = 11/12 (91%)
Query: 81 VLVGETGSGKTT 92
+++G+ GSGK++
Sbjct: 27 LIIGQNGSGKSS 38
>3ko1_A Chaperonin; 9-fold symmetry, double ring, ATP hydrolase, chaperone,
NUCL binding; HET: ADP; 3.70A {Acidianus tengchongensis}
Length = 553
Score = 28.3 bits (64), Expect = 3.4
Identities = 19/83 (22%), Positives = 36/83 (43%), Gaps = 23/83 (27%)
Query: 124 AQRVSEEMDCQLGQEVGYSIRFEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDE 183
A + E ++G++ + E +PK++ + +L+R G ++ +DE
Sbjct: 354 ASLIEER---KVGED--KMVFVEGAKNPKSI----S--ILIRGG-------LERL--VDE 393
Query: 184 AHERTLATDILMGVLKEVIKQRA 206
ER L D L + +VIK
Sbjct: 394 T-ERAL-RDALG-TVADVIKDGR 413
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural
genomics, structural genomics consortium, SGC; 2.20A
{Plasmodium yoelii yoelii str}
Length = 260
Score = 27.9 bits (63), Expect = 3.4
Identities = 9/15 (60%), Positives = 10/15 (66%)
Query: 78 QCIVLVGETGSGKTT 92
LVG TGSGK+T
Sbjct: 47 TTCALVGHTGSGKST 61
>3p9d_G T-complex protein 1 subunit ETA; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_g*
Length = 550
Score = 28.3 bits (64), Expect = 3.5
Identities = 22/83 (26%), Positives = 33/83 (39%), Gaps = 23/83 (27%)
Query: 124 AQRVSEEMDCQLGQEVGYSIRFEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDE 183
E Q+G E F+ C KT T +LLR G QV + E
Sbjct: 349 CALFEEM---QIGSE--RYNLFQGCPQAKTC----T--LLLRGG-------AEQV--IAE 388
Query: 184 AHERTLATDILMGVLKEVIKQRA 206
ER+L D +M ++K ++ +
Sbjct: 389 V-ERSL-HDAIM-IVKRALQNKL 408
>1mhm_A Adometdc, samdc, S-adenosylmethionine decarboxylase; covalent
pyruvoyl group, lyase; 2.30A {Solanum tuberosum} SCOP:
d.156.1.1
Length = 288
Score = 28.0 bits (62), Expect = 3.5
Identities = 19/67 (28%), Positives = 25/67 (37%), Gaps = 12/67 (17%)
Query: 96 QWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSI------RFEDCS 149
++ V V K + V S+A+ EE G SI R C
Sbjct: 216 EFSVALHADVATKLLERICSVDVKGYSLAEWSPEEFGE------GGSIVYQKFTRTPYCE 269
Query: 150 SPKTVLK 156
SPK+VLK
Sbjct: 270 SPKSVLK 276
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid
biosynthesis, P-loop kinase, metal- binding, shikimate
pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis}
SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A*
2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A*
1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A*
3baf_A*
Length = 184
Score = 27.6 bits (62), Expect = 3.6
Identities = 9/13 (69%), Positives = 10/13 (76%)
Query: 80 IVLVGETGSGKTT 92
VLVG GSGK+T
Sbjct: 5 AVLVGLPGSGKST 17
>3ruv_A Chaperonin, CPN; double-ring, protein folding machinery, group II
chaperonin, binding, chaperone; HET: ANP; 2.24A
{Methanococcus maripaludis} PDB: 3rus_A* 3ruw_A* 3ruq_A*
3los_A 3kfb_A* 3izi_A 3izj_A 3izm_A 3izh_A 3kfe_A*
3iyf_A* 3kfk_A* 3izk_A 3izl_A 3j03_A 3izn_A 3j02_A
Length = 543
Score = 28.3 bits (64), Expect = 3.8
Identities = 23/105 (21%), Positives = 38/105 (36%), Gaps = 23/105 (21%)
Query: 102 SKSVGAKAVACTQPRRVAAMSVAQRVSEEMDCQLGQEVGYSIRFEDCSSPKTVLKYMTDG 161
+K+ GA +A + A V E ++ + I E+C PK V T
Sbjct: 318 AKATGANVIAAIAALSAQDLGDAGLVEER---KISGD--SMIFVEECKHPKAV----T-- 366
Query: 162 MLLREGMSDPMLENYQVILLDEAHERTLATDILMGVLKEVIKQRA 206
ML+R V ++E R + D + V+ I+
Sbjct: 367 MLIRGT-------TEHV--IEEV-ARAV-DDAVG-VVGCTIEDGR 399
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein;
HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Length = 274
Score = 27.8 bits (61), Expect = 3.8
Identities = 8/16 (50%), Positives = 13/16 (81%)
Query: 79 CIVLVGETGSGKTTQI 94
+++VGE+G GK+T I
Sbjct: 10 TLMVVGESGLGKSTLI 25
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI,
protein structure initiative; 2.05A {Escherichia coli}
SCOP: c.37.1.2
Length = 173
Score = 27.5 bits (62), Expect = 3.8
Identities = 8/13 (61%), Positives = 10/13 (76%)
Query: 80 IVLVGETGSGKTT 92
I LVG G+GK+T
Sbjct: 7 IFLVGPMGAGKST 19
>1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A
{Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB:
1q2v_A* 1q3s_A* 1q3r_A
Length = 548
Score = 28.3 bits (64), Expect = 4.0
Identities = 32/110 (29%), Positives = 47/110 (42%), Gaps = 33/110 (30%)
Query: 102 SKSVGAKAVACTQPRRVAAMS-----VAQRVSEEMDCQLGQEVGYSIRFEDCSSPKTVLK 156
+K+ GAK V V ++ A+ V E +L E I E C +PK V
Sbjct: 325 AKATGAKIVT-----NVKDLTPEDLGYAEVVEER---KLAGE--NMIFVEGCKNPKAV-- 372
Query: 157 YMTDGMLLREGMSDPMLENYQVILLDEAHERTLATDILMGVLKEVIKQRA 206
T +L+R G V +DE ER L D + V+K+V++ A
Sbjct: 373 --T--ILIRGG-------TEHV--IDEV-ERAL-EDAVK-VVKDVMEDGA 406
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural
genomics, PSI, protein struc initiative; 3.20A
{Agrobacterium tumefaciens str} SCOP: c.37.1.25
Length = 191
Score = 27.4 bits (60), Expect = 4.3
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 71 MTLLAQNQCIVLVGETGSGKTT 92
MT ++L G GSGK+T
Sbjct: 3 MTDDLGGNILLLSGHPGSGKST 24
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase,
transferase; HET: T5A; 1.98A {Escherichia coli} SCOP:
c.37.1.1 PDB: 5tmp_A*
Length = 213
Score = 27.5 bits (62), Expect = 4.4
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 80 IVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACT 113
IV+ G G+GKTT VE + +G + + T
Sbjct: 6 IVIEGLEGAGKTTAR-NVVVETLEQLGIRDMVFT 38
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP,
transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP:
c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A*
1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A*
1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A*
1e9f_A*
Length = 215
Score = 27.6 bits (62), Expect = 4.4
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 80 IVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQP 115
IVL G +GK+TQ + VE + G +A P
Sbjct: 12 IVLEGVDRAGKSTQS-RKLVEALCAAGHRAELLRFP 46
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway,
P-loop protein, transferase; 1.8A {Erwinia
chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Length = 173
Score = 27.2 bits (61), Expect = 4.4
Identities = 7/13 (53%), Positives = 8/13 (61%)
Query: 80 IVLVGETGSGKTT 92
I +VG G G TT
Sbjct: 5 IFMVGARGCGMTT 17
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc;
ABC-transporter, ABCB6, nucleotide binding domain, heme
BIOS transport protein; 2.00A {Homo sapiens} PDB:
3nh9_A* 3nha_A* 3nhb_A*
Length = 306
Score = 28.0 bits (63), Expect = 4.5
Identities = 8/15 (53%), Positives = 12/15 (80%)
Query: 78 QCIVLVGETGSGKTT 92
Q + LVG +G+GK+T
Sbjct: 81 QTLALVGPSGAGKST 95
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop
kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex
aeolicus}
Length = 168
Score = 27.5 bits (62), Expect = 4.5
Identities = 7/13 (53%), Positives = 9/13 (69%)
Query: 80 IVLVGETGSGKTT 92
I L+G SGK+T
Sbjct: 3 IYLIGFMCSGKST 15
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+
molecular machine, hexamer, asymmetric,, ATP-BIN
chaperone, metal-binding; HET: ADP; 3.25A {Escherichia
coli} PDB: 3hte_A
Length = 363
Score = 27.5 bits (62), Expect = 4.9
Identities = 13/37 (35%), Positives = 16/37 (43%), Gaps = 5/37 (13%)
Query: 55 HRKRITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKT 91
H KR+ E I+L+G TGSGKT
Sbjct: 34 HYKRLRNGDTSNGVEL-----GKSNILLIGPTGSGKT 65
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET:
GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A*
2j3e_A*
Length = 262
Score = 27.5 bits (61), Expect = 5.1
Identities = 4/11 (36%), Positives = 9/11 (81%)
Query: 80 IVLVGETGSGK 90
++++G+ G GK
Sbjct: 39 VLVLGKGGVGK 49
>1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR
folding, ATPase, chaperonin; 2.60A {Thermoplasma
acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB:
1a6e_A*
Length = 545
Score = 27.9 bits (63), Expect = 5.1
Identities = 18/83 (21%), Positives = 30/83 (36%), Gaps = 23/83 (27%)
Query: 124 AQRVSEEMDCQLGQEVGYSIRFEDCSSPKTVLKYMTDGMLLREGMSDPMLENYQVILLDE 183
A+ V E ++G + C +PK V + +L+R G V + E
Sbjct: 344 AETVEER---KIGDD--RMTFVMGCKNPKAV----S--ILIRGG-------TDHV--VSE 383
Query: 184 AHERTLATDILMGVLKEVIKQRA 206
ER L D + V+ +
Sbjct: 384 V-ERAL-NDAIR-VVAITKEDGK 403
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A
{Coxiella burnetii}
Length = 185
Score = 27.2 bits (61), Expect = 5.2
Identities = 7/13 (53%), Positives = 10/13 (76%)
Query: 80 IVLVGETGSGKTT 92
I L+G G+GKT+
Sbjct: 8 IYLIGLMGAGKTS 20
>1ncq_B Coat protein VP2; HRV, pleconaril, icosahedral virus; HET: W11;
2.50A {Human rhinovirus 14} SCOP: b.121.4.1 PDB:
1d3i_2* 1hrv_2* 1na1_B* 1hri_2* 1r08_2* 1r09_2* 1rmu_2
1ruc_2* 1rud_2* 1rue_2* 1ruf_2 1rug_2* 1ruh_2* 1rui_2*
1ruj_2 1rvf_2 1vrh_2* 2r04_2* 2r06_2* 2r07_2* ...
Length = 262
Score = 27.6 bits (61), Expect = 5.4
Identities = 9/45 (20%), Positives = 14/45 (31%), Gaps = 1/45 (2%)
Query: 11 PYITKKNREERLATVNASVSTSIASNLQVNPFTGYPYTPRYHELH 55
P + +R+ + ST I + N Y P Y
Sbjct: 2 PNVEACGYSDRVQQITLGNST-ITTQEAANAVVCYAEWPEYLPDV 45
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding
loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori}
SCOP: c.37.1.20
Length = 376
Score = 27.6 bits (62), Expect = 5.5
Identities = 9/12 (75%), Positives = 11/12 (91%)
Query: 80 IVLVGETGSGKT 91
I+L+G TGSGKT
Sbjct: 75 ILLIGPTGSGKT 86
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A
{Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Length = 287
Score = 27.7 bits (60), Expect = 5.5
Identities = 10/48 (20%), Positives = 17/48 (35%), Gaps = 4/48 (8%)
Query: 45 YPYTPRYHELHRKRITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTT 92
+T + E E + + +L G+ GSGKT+
Sbjct: 5 VNFTDKQFENRLNDN----LEELIQGKKAVESPTAFLLGGQPGSGKTS 48
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics
consortium, SGC, immune system; HET: GDP; 2.21A {Homo
sapiens} PDB: 3v70_A*
Length = 247
Score = 27.3 bits (60), Expect = 5.6
Identities = 7/15 (46%), Positives = 11/15 (73%)
Query: 80 IVLVGETGSGKTTQI 94
++LVG TG+GK+
Sbjct: 24 LILVGRTGAGKSATG 38
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics,
cell membrane, cobalt transport, hydrolase, ION
transport; 2.30A {Clostridium perfringens atcc 13124}
Length = 275
Score = 27.5 bits (62), Expect = 5.6
Identities = 5/17 (29%), Positives = 10/17 (58%)
Query: 76 QNQCIVLVGETGSGKTT 92
+ + ++G G GK+T
Sbjct: 33 RGEVTAILGGNGVGKST 49
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus,
hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Length = 677
Score = 27.6 bits (60), Expect = 6.0
Identities = 17/67 (25%), Positives = 26/67 (38%), Gaps = 9/67 (13%)
Query: 76 QNQCIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQPRRVAAMSVAQRVSEEM-DCQ 134
Q + I G T SGKT K AK+ P ++ A + ++ + C
Sbjct: 154 QRKIIFHSGPTNSGKTY------HAIQKYFSAKSGVYCGPLKLLAHEIFEKSNAAGVPCD 207
Query: 135 L--GQEV 139
L G+E
Sbjct: 208 LVTGEER 214
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE;
1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A*
3p1j_A
Length = 260
Score = 27.3 bits (60), Expect = 6.1
Identities = 8/15 (53%), Positives = 12/15 (80%)
Query: 80 IVLVGETGSGKTTQI 94
I+LVG+TG+GK+
Sbjct: 25 IILVGKTGTGKSAAG 39
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE;
1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Length = 175
Score = 26.8 bits (60), Expect = 6.3
Identities = 8/13 (61%), Positives = 10/13 (76%)
Query: 80 IVLVGETGSGKTT 92
IV +G GSGK+T
Sbjct: 7 IVFIGFMGSGKST 19
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein
struct initiative, northeast structural genomics
consortium, NESG, function; 2.40A {Bacillus halodurans}
SCOP: c.37.1.25
Length = 189
Score = 26.8 bits (59), Expect = 6.3
Identities = 6/26 (23%), Positives = 11/26 (42%)
Query: 80 IVLVGETGSGKTTQIPQWCVEYSKSV 105
++ G G GK+T + + S
Sbjct: 5 YIITGPAGVGKSTTCKRLAAQLDNSA 30
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase,
HEL helix motif, transcription regulator; 3.20A
{Streptococcus pneumoniae}
Length = 253
Score = 27.2 bits (59), Expect = 6.4
Identities = 12/43 (27%), Positives = 17/43 (39%)
Query: 50 RYHELHRKRITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTT 92
Y + K T Q I+L G++G+GKTT
Sbjct: 5 DYTDSEFKHALARNLRSLTRGKKSSKQPIAILLGGQSGAGKTT 47
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural
genomics of infec diseases, csgid, metal binding,
transferase; 1.70A {Bacteroides thetaiotaomicron}
Length = 199
Score = 26.8 bits (60), Expect = 6.4
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 80 IVLVGETGSGKTT 92
I L G G+GKTT
Sbjct: 28 IFLTGYMGAGKTT 40
>3ec2_A DNA replication protein DNAC; helicase loader, replication
initiation factor, ATP-binding, nucleotide-binding;
HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Length = 180
Score = 27.0 bits (60), Expect = 6.4
Identities = 9/36 (25%), Positives = 15/36 (41%), Gaps = 2/36 (5%)
Query: 56 RKRITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKT 91
+ R L + + F + + + VG G GKT
Sbjct: 19 QNRALLTIRVFVHNFNP--EEGKGLTFVGSPGVGKT 52
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC
transporter ATPase domain-like; HET: DNA ADP; 2.70A
{Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Length = 371
Score = 27.5 bits (61), Expect = 6.6
Identities = 6/12 (50%), Positives = 10/12 (83%)
Query: 81 VLVGETGSGKTT 92
++GE GSGK++
Sbjct: 29 AIIGENGSGKSS 40
>3llu_A RAS-related GTP-binding protein C; structural genomics
consortium, SGC, cytoplasm, nucleotide-binding,
nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens}
PDB: 2q3f_A*
Length = 196
Score = 26.9 bits (59), Expect = 6.7
Identities = 6/13 (46%), Positives = 10/13 (76%)
Query: 80 IVLVGETGSGKTT 92
I+L+G SGK++
Sbjct: 23 ILLMGLRRSGKSS 35
>2eyu_A Twitching motility protein PILT; pilus retraction motor,
C-terminal domain PILT, protein transport; 1.87A
{Aquifex aeolicus}
Length = 261
Score = 27.2 bits (61), Expect = 6.9
Identities = 10/24 (41%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Query: 70 FMTLLAQNQCIVLV-GETGSGKTT 92
+ L + ++LV G TGSGK+T
Sbjct: 17 VLELCHRKMGLILVTGPTGSGKST 40
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga
maritima} PDB: 3qg5_A 3tho_A*
Length = 365
Score = 27.1 bits (60), Expect = 7.0
Identities = 5/12 (41%), Positives = 9/12 (75%)
Query: 81 VLVGETGSGKTT 92
V+ G G+GK++
Sbjct: 27 VVEGPNGAGKSS 38
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A
{Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A*
3mrs_A 3n2e_A*
Length = 168
Score = 26.7 bits (60), Expect = 7.0
Identities = 7/13 (53%), Positives = 11/13 (84%)
Query: 80 IVLVGETGSGKTT 92
+VL+G GSGK++
Sbjct: 10 LVLIGFMGSGKSS 22
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein;
ATP-binding, nucleotide-binding, membrane,
transmembrane, transport protein; 3.00A {Methanosarcina
acetivorans} SCOP: b.40.6.3 c.37.1.12
Length = 348
Score = 27.1 bits (61), Expect = 7.1
Identities = 10/43 (23%), Positives = 17/43 (39%), Gaps = 11/43 (25%)
Query: 50 RYHELHRKRITLPVFEYRTEFMTLLAQNQCIVLVGETGSGKTT 92
++ ++L V E+ +L G TG+GKT
Sbjct: 10 KWKNFSLDNLSLKV--ESGEYFVIL---------GPTGAGKTL 41
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural
genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Length = 263
Score = 26.9 bits (60), Expect = 7.2
Identities = 7/13 (53%), Positives = 11/13 (84%)
Query: 80 IVLVGETGSGKTT 92
++++G GSGKTT
Sbjct: 33 VIILGPNGSGKTT 45
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase,
hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex
aeolicus} PDB: 2eww_A* 2gsz_A*
Length = 372
Score = 27.2 bits (61), Expect = 7.7
Identities = 10/24 (41%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Query: 70 FMTLLAQNQCIVLV-GETGSGKTT 92
+ L + ++LV G TGSGK+T
Sbjct: 128 VLELCHRKMGLILVTGPTGSGKST 151
>4av1_A Poly [ADP-ribose] polymerase 1; transferase, PARP1, DNA-binding
domain, DBD, DNA repair, CAN poly- ADP(ribosyl)ation;
3.10A {Homo sapiens} PDB: 2l30_A
Length = 223
Score = 26.7 bits (58), Expect = 8.0
Identities = 8/37 (21%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 79 CIVLVGETGSGKTTQIPQWCVEYSKSVGAKAVACTQP 115
+ ++ + G + + VEY+KS A C++
Sbjct: 13 ALEVLFQGPLGSHSDKL-YRVEYAKSGRASCKKCSES 48
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside
modification, isopentenyl-tRNA transferase,
transferase-RNA complex; 2.50A {Escherichia coli k-12}
PDB: 2zxu_A* 2zm5_A
Length = 316
Score = 27.1 bits (61), Expect = 8.4
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 71 MTLLAQNQCIVLVGETGSGKT 91
++ + + I L+G T SGKT
Sbjct: 4 ISKASLPKAIFLMGPTASGKT 24
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase,
antibiotic resistance, phosphorylation, mononucleoti
binding fold; HET: ATP; 2.50A {Streptomyces venezuelae}
SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A*
1qhy_A*
Length = 178
Score = 26.6 bits (58), Expect = 8.7
Identities = 5/16 (31%), Positives = 10/16 (62%)
Query: 77 NQCIVLVGETGSGKTT 92
+ I+L G + +GK+
Sbjct: 3 TRMIILNGGSSAGKSG 18
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A
{Enterobacteria phage T4} SCOP: c.37.1.1
Length = 181
Score = 26.7 bits (59), Expect = 8.8
Identities = 7/13 (53%), Positives = 10/13 (76%)
Query: 80 IVLVGETGSGKTT 92
I+ +G GSGK+T
Sbjct: 5 ILTIGCPGSGKST 17
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop,
transferase; HET: ADP; 2.33A {Enterobacteria phage T4}
SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A*
2ia5_A
Length = 301
Score = 27.0 bits (59), Expect = 9.0
Identities = 7/13 (53%), Positives = 10/13 (76%)
Query: 80 IVLVGETGSGKTT 92
I+ +G GSGK+T
Sbjct: 5 ILTIGCPGSGKST 17
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion
ATPase, ATP-binding, FIMB nucleotide-binding, transport;
HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB:
3jvu_A*
Length = 356
Score = 26.8 bits (60), Expect = 9.2
Identities = 11/24 (45%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Query: 70 FMTLLAQNQCIVLV-GETGSGKTT 92
F + + +VLV G TGSGK+T
Sbjct: 115 FKRVSDVPRGLVLVTGPTGSGKST 138
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation,
ATP-binding, cytoplasm, mitochondrion,
nucleotide-binding, nucleus; 2.95A {Saccharomyces
cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Length = 409
Score = 26.9 bits (60), Expect = 9.9
Identities = 7/12 (58%), Positives = 9/12 (75%)
Query: 80 IVLVGETGSGKT 91
IV+ G TG GK+
Sbjct: 5 IVIAGTTGVGKS 16
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.135 0.401
Gapped
Lambda K H
0.267 0.0788 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,619,215
Number of extensions: 272110
Number of successful extensions: 1079
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1044
Number of HSP's successfully gapped: 174
Length of query: 302
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 209
Effective length of database: 4,105,140
Effective search space: 857974260
Effective search space used: 857974260
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (25.6 bits)