Query psy2072
Match_columns 294
No_of_seqs 225 out of 2047
Neff 7.8
Searched_HMMs 46136
Date Fri Aug 16 23:36:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2072.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2072hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0925|consensus 100.0 4.8E-42 1E-46 319.7 18.0 209 3-234 427-658 (699)
2 KOG0924|consensus 100.0 1.7E-38 3.6E-43 305.1 16.0 184 3-213 737-940 (1042)
3 KOG0922|consensus 100.0 3.3E-37 7.1E-42 297.4 15.0 186 3-214 429-635 (674)
4 KOG0923|consensus 100.0 7.5E-35 1.6E-39 279.4 14.5 215 3-247 646-880 (902)
5 PRK11131 ATP-dependent RNA hel 100.0 7.9E-33 1.7E-37 288.3 17.1 191 3-219 450-671 (1294)
6 TIGR01967 DEAH_box_HrpA ATP-de 100.0 8.3E-29 1.8E-33 259.0 17.5 185 3-213 443-654 (1283)
7 KOG0920|consensus 99.9 1.5E-25 3.3E-30 226.3 12.3 184 2-207 585-806 (924)
8 KOG0925|consensus 99.8 7.5E-22 1.6E-26 185.0 6.7 135 129-290 479-628 (699)
9 KOG0926|consensus 99.8 9.6E-21 2.1E-25 185.7 13.6 192 4-218 745-995 (1172)
10 KOG0924|consensus 99.8 1.2E-21 2.5E-26 189.5 2.9 134 129-292 789-934 (1042)
11 KOG0922|consensus 99.8 1.2E-21 2.6E-26 190.0 2.2 136 127-291 480-628 (674)
12 COG1643 HrpA HrpA-like helicas 99.8 1.3E-19 2.8E-24 183.8 12.5 188 3-213 427-667 (845)
13 PF04408 HA2: Helicase associa 99.7 3.3E-17 7.2E-22 127.3 5.6 82 13-116 1-102 (102)
14 smart00847 HA2 Helicase associ 99.6 1.5E-15 3.3E-20 115.4 6.1 74 20-116 17-92 (92)
15 KOG0923|consensus 99.5 3.9E-15 8.4E-20 144.4 2.9 131 132-291 701-844 (902)
16 PRK11131 ATP-dependent RNA hel 99.4 3.3E-13 7.2E-18 142.2 5.8 138 129-291 507-658 (1294)
17 KOG0921|consensus 99.1 4.8E-11 1E-15 119.4 5.5 183 2-206 814-1026(1282)
18 PRK11664 ATP-dependent RNA hel 99.0 5.3E-09 1.1E-13 107.9 13.4 56 3-59 378-444 (812)
19 TIGR01967 DEAH_box_HrpA ATP-de 99.0 5.5E-10 1.2E-14 118.5 6.1 137 130-291 499-648 (1283)
20 TIGR01970 DEAH_box_HrpB ATP-de 98.9 8.8E-10 1.9E-14 113.5 6.0 56 3-59 375-439 (819)
21 PF07717 OB_NTP_bind: Oligonuc 98.8 1.8E-09 3.9E-14 85.1 2.3 60 231-290 1-76 (114)
22 PF07717 OB_NTP_bind: Oligonuc 98.2 4.7E-07 1E-11 71.3 0.6 69 150-218 1-89 (114)
23 KOG0920|consensus 97.6 5.7E-05 1.2E-09 78.1 3.8 83 208-290 703-805 (924)
24 COG1643 HrpA HrpA-like helicas 97.5 7.8E-05 1.7E-09 77.0 4.2 80 209-288 555-657 (845)
25 KOG3843|consensus 97.3 3.9E-05 8.5E-10 68.5 -0.7 83 2-84 124-206 (432)
26 KOG0926|consensus 96.9 0.0015 3.2E-08 66.3 5.3 80 209-289 888-981 (1172)
27 PF05889 SLA_LP_auto_ag: Solub 96.9 0.00013 2.8E-09 68.8 -2.0 61 24-84 144-204 (389)
28 PHA02653 RNA helicase NPH-II; 92.4 0.097 2.1E-06 53.6 3.0 41 2-46 546-595 (675)
29 PRK01172 ski2-like helicase; P 89.2 5.5 0.00012 40.8 12.3 42 8-49 443-495 (674)
30 PRK02362 ski2-like helicase; P 76.4 31 0.00067 35.9 11.5 39 9-47 465-515 (737)
31 PRK05255 hypothetical protein; 33.3 62 0.0013 27.4 3.8 44 3-46 14-62 (171)
32 PRK11664 ATP-dependent RNA hel 30.1 45 0.00097 35.3 3.0 36 256-291 489-531 (812)
33 PF03288 Pox_D5: Poxvirus D5 p 26.7 1.2E+02 0.0026 21.8 4.1 42 109-158 18-59 (86)
34 PF00126 HTH_1: Bacterial regu 25.8 38 0.00082 22.9 1.1 26 1-26 23-60 (60)
35 COG3028 Uncharacterized protei 24.8 1.2E+02 0.0025 25.8 4.0 42 4-45 25-71 (187)
36 PRK00254 ski2-like helicase; P 24.3 8.1E+02 0.017 25.4 11.8 27 20-46 479-505 (720)
37 PF09821 AAA_assoc_C: C-termin 23.3 55 0.0012 25.9 1.7 47 10-59 16-71 (120)
No 1
>KOG0925|consensus
Probab=100.00 E-value=4.8e-42 Score=319.69 Aligned_cols=209 Identities=49% Similarity=0.790 Sum_probs=191.8
Q ss_pred CCCCCHHHHHHHHHHhh---------hccHHHHHHHhCCCChHHHHHHHhhccCCCCccchHHHhhcccccCCCccccch
Q psy2072 3 LHPIVIETLMSGDELRT---------DLVSLESQMATLGSDNIVCVLTTTSCFAPRVADNLDPIAALCQRYNIPHVINNA 73 (294)
Q Consensus 3 l~pP~~~~l~~a~~~L~---------~lT~lG~~~~~~p~~p~~~~~ll~~~~~~c~~~~~~~i~a~~~~~~~~~~~~~~ 73 (294)
+|||.++++++|++.|. +||++|..|++||+||.++|||+.|+.|+|+.| +++|+|
T Consensus 427 mDpPAPEtLMrALE~LnYLaaLdDdGnLT~lG~imSEFPLdPqLAkmLi~S~efnCsnE-iLsisA-------------- 491 (699)
T KOG0925|consen 427 MDPPAPETLMRALEVLNYLAALDDDGNLTSLGEIMSEFPLDPQLAKMLIGSCEFNCSNE-ILSISA-------------- 491 (699)
T ss_pred CCCCChHHHHHHHHHhhhhhhhCCCcccchhhhhhhcCCCChHHHHHHhhcCCCCchHH-HHHHHh--------------
Confidence 79999999999999997 899999999999999999999999999999999 999999
Q ss_pred hhhhhHhhhhccccccCCh-hHHHHHHHHhhhhccCCCCHhHHHHHHHHHHhcCCChhhHHhhccCHHHHHhHHHHHHHH
Q psy2072 74 YGLQSTRLMKLIQEAARPN-EAKKAADDAKMRFAHIDGDHLTLLNVYHAFKQNQEDPQWCYDNFVNYRSLKSADNVRQQL 152 (294)
Q Consensus 74 ~~~~~~~~ls~~~~f~~~~-~~~~~~~~~~~~f~~~~gDhlt~l~~~~~~~~~~~~~~~C~~~~L~~~aL~~a~~Ir~QL 152 (294)
|||+.+.|++|. +.+++++.+++.|+|++|||+|++|||++|++++...+||++++||+++|.+|.++|+||
T Consensus 492 -------MLsvPncFvRp~~~a~kaAdeak~~faH~dGDHlTLlnVYhAfkq~~~~~~WC~~~flN~ral~~Ad~vR~qL 564 (699)
T KOG0925|consen 492 -------MLSVPNCFVRPTSSASKAADEAKETFAHIDGDHLTLLNVYHAFKQNNEDPNWCYDNFLNYRALKSADNVRQQL 564 (699)
T ss_pred -------cccCCccccCCChhHHHHHHHHHHHhccCCcchHHHHHHHHHHHhcCCChhHHHHhcccHHHHHhHHHHHHHH
Confidence 999999999987 888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCccCCCCCCCChhhHHHHHHHHHhchhhhHHHHhh----------cccccCCCccCCCCCcccc-ccccccc-
Q psy2072 153 SRIMDRFNLKRSSTEFTSKDYYINIRKSLVTGFFMQLIIVLA----------YPISSLPTVSLDQEDPQWC-YDNFVNY- 220 (294)
Q Consensus 153 ~~~l~~~~l~~~s~~~~d~~~~l~I~kal~aG~~~nvA~~~~----------~p~~iHPsS~l~~~~~~WC-~~~~ln~- 220 (294)
.++|.+++++..+.+|++.+.+.+|+||+++|||+|||+... .-+.+||++++. ..++|+ +.+|+-.
T Consensus 565 ~rim~R~~L~~~st~F~S~~y~~nirKALvsgyFmqVA~~~~~~~Ylt~kdnqvvqLhps~~l~-~~PeWVlyneFvlt~ 643 (699)
T KOG0925|consen 565 LRIMDRFNLPLCSTDFGSRDYYVNIRKALVSGYFMQVAHLERGGHYLTVKDNQVVQLHPSTCLD-HKPEWVLYNEFVLTT 643 (699)
T ss_pred HHHHHHhcCcccCCCCCChhHHHHHHHHHHHHHHHHHHhhccCCceEEEecCceEEeccccccC-CCCCeEEEeeEEeec
Confidence 999999999999999999999999999999999999999863 235799999986 578997 6666522
Q ss_pred c-ccccHHHHHHHHH
Q psy2072 221 R-SLKSADNVRQQLS 234 (294)
Q Consensus 221 r-~L~~a~~ir~QL~ 234 (294)
+ -++.+.+||-+..
T Consensus 644 ~N~ir~vt~I~pewl 658 (699)
T KOG0925|consen 644 KNFIRTVTDIRPEWL 658 (699)
T ss_pred cceeeeecccCHHHH
Confidence 2 2456667777754
No 2
>KOG0924|consensus
Probab=100.00 E-value=1.7e-38 Score=305.06 Aligned_cols=184 Identities=24% Similarity=0.402 Sum_probs=174.1
Q ss_pred CCCCCHHHHHHHHHHhh---------hccHHHHHHHhCCCChHHHHHHHhhccCCCCccchHHHhhcccccCCCccccch
Q psy2072 3 LHPIVIETLMSGDELRT---------DLVSLESQMATLGSDNIVCVLTTTSCFAPRVADNLDPIAALCQRYNIPHVINNA 73 (294)
Q Consensus 3 l~pP~~~~l~~a~~~L~---------~lT~lG~~~~~~p~~p~~~~~ll~~~~~~c~~~~~~~i~a~~~~~~~~~~~~~~ 73 (294)
+||||.+.+..|+..|. .||++|+.|++||+||.++||||.|+.+||++| +++|++
T Consensus 737 mD~Pped~~~~sly~Lw~LGAl~~~g~LT~lG~~MvefpLDP~lsKmll~a~~~Gc~dE-ilsIvS-------------- 801 (1042)
T KOG0924|consen 737 MDPPPEDNLLNSLYQLWTLGALDNTGQLTPLGRKMVEFPLDPPLSKMLLMAARMGCSDE-ILSIVS-------------- 801 (1042)
T ss_pred CCCCHHHHHHHHHHHHHHhhccccCCccchhhHHhhhCCCCchHHHHHHHHhccCcHHH-HHHHHH--------------
Confidence 69999999999999998 899999999999999999999999999999999 999999
Q ss_pred hhhhhHhhhhccccccCChhHHHHHHHHhhhhccCCCCHhHHHHHHHHHHhcCCChhhHHhhccCHHHHHhHHHHHHHHH
Q psy2072 74 YGLQSTRLMKLIQEAARPNEAKKAADDAKMRFAHIDGDHLTLLNVYHAFKQNQEDPQWCYDNFVNYRSLKSADNVRQQLS 153 (294)
Q Consensus 74 ~~~~~~~~ls~~~~f~~~~~~~~~~~~~~~~f~~~~gDhlt~l~~~~~~~~~~~~~~~C~~~~L~~~aL~~a~~Ir~QL~ 153 (294)
|||+..+|.+|++.+++++.++.+|.+++|||||+||||++|.+++++..||.+++|+.++|..|.++|.||.
T Consensus 802 -------mLSvp~VF~rpker~eead~ar~Kf~~~~sDhLTlLNVf~qw~~~~~~~~WCnd~~l~~kaL~~arevR~ql~ 874 (1042)
T KOG0924|consen 802 -------MLSVPAVFYRPKEREEEADAAREKFQVPESDHLTLLNVFNQWRKNKYSSMWCNDHYLQVKALKKAREVRRQLL 874 (1042)
T ss_pred -------HhcccceeeccccchhhhhhHHhhhcCCCCchhhHHHHHHHHHhcCCchhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCccCCCCCCCChhhHHHHHHHHHhchhhhHHHHhh----------cccccCCCccCCCC-Ccccc
Q psy2072 154 RIMDRFNLKRSSTEFTSKDYYINIRKSLVTGFFMQLIIVLA----------YPISSLPTVSLDQE-DPQWC 213 (294)
Q Consensus 154 ~~l~~~~l~~~s~~~~d~~~~l~I~kal~aG~~~nvA~~~~----------~p~~iHPsS~l~~~-~~~WC 213 (294)
.++++.++++.++ .++..|++|+|+|||.|+|++.+ .|+.+||+|.+++. .|.++
T Consensus 875 ~il~~l~~~l~S~-----~dwdivrKCIcs~~fhn~Arlkg~g~YV~~~tg~~c~lHPsS~L~g~y~p~Yi 940 (1042)
T KOG0924|consen 875 EILKQLKLPLISS-----DDWDIVRKCICSAYFHNAARLKGIGEYVNLSTGIPCHLHPSSVLHGLYTPDYI 940 (1042)
T ss_pred HHHHHcCCCcccC-----chHHHHHHHHHHHHHHHHHHhccCceEEEccCCcceeecchHhhhcCCCCCee
Confidence 9999999998875 37999999999999999999874 46789999999876 44443
No 3
>KOG0922|consensus
Probab=100.00 E-value=3.3e-37 Score=297.37 Aligned_cols=186 Identities=35% Similarity=0.531 Sum_probs=174.5
Q ss_pred CCCCCHHHHHHHHHHhh---------hccH-HHHHHHhCCCChHHHHHHHhhccCCCCccchHHHhhcccccCCCccccc
Q psy2072 3 LHPIVIETLMSGDELRT---------DLVS-LESQMATLGSDNIVCVLTTTSCFAPRVADNLDPIAALCQRYNIPHVINN 72 (294)
Q Consensus 3 l~pP~~~~l~~a~~~L~---------~lT~-lG~~~~~~p~~p~~~~~ll~~~~~~c~~~~~~~i~a~~~~~~~~~~~~~ 72 (294)
+|||+.+++..|++.|+ .||. +|++|+++|++|.++|||+.|..+||.++ +++|+|
T Consensus 429 ~d~P~~~~l~~AL~~L~~lgald~~g~lt~p~G~~ma~~Pl~p~lsk~ll~s~~~gc~~e-~l~i~a------------- 494 (674)
T KOG0922|consen 429 IDPPPPEALEEALEELYSLGALDDRGKLTSPLGRQMAELPLEPHLSKMLLKSSELGCSEE-ILTIAA------------- 494 (674)
T ss_pred CCCCChHHHHHHHHHHHhcCcccCcCCcCchHHhhhhhcCCCcchhhhhhhccccCCcch-hhhhee-------------
Confidence 78999999999999999 7887 99999999999999999999999999999 999999
Q ss_pred hhhhhhHhhhhccccccCChhHHHH-HHHHhhhhccCCCCHhHHHHHHHHHHhcCCChhhHHhhccCHHHHHhHHHHHHH
Q psy2072 73 AYGLQSTRLMKLIQEAARPNEAKKA-ADDAKMRFAHIDGDHLTLLNVYHAFKQNQEDPQWCYDNFVNYRSLKSADNVRQQ 151 (294)
Q Consensus 73 ~~~~~~~~~ls~~~~f~~~~~~~~~-~~~~~~~f~~~~gDhlt~l~~~~~~~~~~~~~~~C~~~~L~~~aL~~a~~Ir~Q 151 (294)
|||++++|.+|.+++.. ++..+.+|.+++|||+|++++|+.|.+++.+++||.+|+|++++|+.+.+||+|
T Consensus 495 --------~Lsv~~~f~~p~~~~~~~a~~~~~kf~~~eGDh~tlL~vy~~~~~~~~~~~wC~en~i~~r~l~~a~~ir~Q 566 (674)
T KOG0922|consen 495 --------MLSVQSVFSRPKDKKAEDADRKRAKFANPEGDHLTLLNVYESWKENGTSKKWCKENFINARSLKRAKDIRKQ 566 (674)
T ss_pred --------eeeccceecCccchhhhhhhHHHHhhcCcccCHHHHHHHHHHHHhcCChhhHHHHhcccHHHHHHHHHHHHH
Confidence 99999999999888877 999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCccCCCCCCCChhhHHHHHHHHHhchhhhHHHHh----------hcccccCCCccCCCCCccccc
Q psy2072 152 LSRIMDRFNLKRSSTEFTSKDYYINIRKSLVTGFFMQLIIVL----------AYPISSLPTVSLDQEDPQWCY 214 (294)
Q Consensus 152 L~~~l~~~~l~~~s~~~~d~~~~l~I~kal~aG~~~nvA~~~----------~~p~~iHPsS~l~~~~~~WC~ 214 (294)
|.+++++++++..++. .+...|++|+++|||.|+|++. +.+++|||||+++...++|.-
T Consensus 567 L~~i~~~~~~~~~s~~----~d~~~i~k~l~aGff~N~A~~~~~~~Yrti~~~~~v~IHPSS~l~~~~p~~vi 635 (674)
T KOG0922|consen 567 LRRILDKFGLPVSSCG----GDMEKIRKCLCAGFFRNVAERDYQDGYRTIRGGQPVYIHPSSVLFRRKPEWVI 635 (674)
T ss_pred HHHHHHHcCCCccCCC----CCHHHHHHHHHHHHHHHHHHhhcCCCeEEccCCcEEEEechHHhhcCCCCEEE
Confidence 9999999998876554 4568999999999999999997 246889999999998899973
No 4
>KOG0923|consensus
Probab=100.00 E-value=7.5e-35 Score=279.41 Aligned_cols=215 Identities=28% Similarity=0.464 Sum_probs=187.4
Q ss_pred CCCCCHHHHHHHHHHhh---------hccHHHHHHHhCCCChHHHHHHHhhccCCCCccchHHHhhcccccCCCccccch
Q psy2072 3 LHPIVIETLMSGDELRT---------DLVSLESQMATLGSDNIVCVLTTTSCFAPRVADNLDPIAALCQRYNIPHVINNA 73 (294)
Q Consensus 3 l~pP~~~~l~~a~~~L~---------~lT~lG~~~~~~p~~p~~~~~ll~~~~~~c~~~~~~~i~a~~~~~~~~~~~~~~ 73 (294)
|||||.++|..|++.|+ .||.+|++|++||+||+++|||+.|-.++|.++ +++|+|
T Consensus 646 mDpPp~etL~~aLE~LyaLGALn~~GeLTk~GrrMaEfP~dPmlsKmi~as~ky~cs~E-iitiaa-------------- 710 (902)
T KOG0923|consen 646 LDPPPTETLLKALEQLYALGALNHLGELTKLGRRMAEFPVDPMLSKMIVASEKYKCSEE-IITIAA-------------- 710 (902)
T ss_pred CCCCChHHHHHHHHHHHHhhccccccchhhhhhhhhhcCCCHHHHhHHhhhccccchHH-HHHHHH--------------
Confidence 79999999999999999 899999999999999999999999999999999 999999
Q ss_pred hhhhhHhhhhcc-ccccCChhHHHHHHHHhhhhccCCCCHhHHHHHHHHHHhcCCChhhHHhhccCHHHHHhHHHHHHHH
Q psy2072 74 YGLQSTRLMKLI-QEAARPNEAKKAADDAKMRFAHIDGDHLTLLNVYHAFKQNQEDPQWCYDNFVNYRSLKSADNVRQQL 152 (294)
Q Consensus 74 ~~~~~~~~ls~~-~~f~~~~~~~~~~~~~~~~f~~~~gDhlt~l~~~~~~~~~~~~~~~C~~~~L~~~aL~~a~~Ir~QL 152 (294)
|+|+. ++|.+|+++...++.+++.|.++.|||+++++||+.|...+.+.+||.++++.+++|..+.+||.||
T Consensus 711 -------mlS~~~svfyrpk~~~v~ad~a~~~f~~~~gDhi~~L~vyn~w~es~~s~~wC~e~~iq~~sm~rardir~qL 783 (902)
T KOG0923|consen 711 -------MLSVGASVFYRPKDKQVHADNARKNFEEPVGDHIVLLNVYNQWKESKYSTQWCYENFIQYRSMKRARDIRDQL 783 (902)
T ss_pred -------HHhcCchheecchhhhhhhhhhhhccCCCCcchhhhhHHHHHHhhcchhhHHHHHhhhhHHHHHHHHHHHHHH
Confidence 99997 6999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCccCCCCCCCChhhHHHHHHHHHhchhhhHHHHhhc----------ccccCCCccCCCCCccccccccccccc
Q psy2072 153 SRIMDRFNLKRSSTEFTSKDYYINIRKSLVTGFFMQLIIVLAY----------PISSLPTVSLDQEDPQWCYDNFVNYRS 222 (294)
Q Consensus 153 ~~~l~~~~l~~~s~~~~d~~~~l~I~kal~aG~~~nvA~~~~~----------p~~iHPsS~l~~~~~~WC~~~~ln~r~ 222 (294)
..++.+.+....++ ..+...|++++.+|||+|+|++... .+++||.|.++...|.|+.-+-+-
T Consensus 784 ~gll~~v~~~~~s~----~~~~~~irk~i~aGff~h~a~l~~~g~y~tvk~~~tv~~hp~S~l~~~~P~wvvy~eLv--- 856 (902)
T KOG0923|consen 784 EGLLERVEIDLSSN----QNDLDKIRKAITAGFFYHTAKLSKGGHYRTVKHPQTVSIHPNSGLFEQLPRWVVYHELV--- 856 (902)
T ss_pred HHHhhhccccccCC----hHHHHHHHHHHhccccccceeccCCCcceeeccCcceeecCcccccccCCceEEEeehh---
Confidence 99999988776654 3478899999999999999998742 258999999999999997332221
Q ss_pred cccHHHHHHHHHHHHHHcCCCCCCC
Q psy2072 223 LKSADNVRQQLSRIMDRFNLKRSST 247 (294)
Q Consensus 223 L~~a~~ir~QL~~~~~~~~~~~~s~ 247 (294)
-...++..|-..+=..|-+++.++
T Consensus 857 -~tske~mr~~~e~e~~Wlie~aph 880 (902)
T KOG0923|consen 857 -LTSKEFMRQVIEIEEEWLIEVAPH 880 (902)
T ss_pred -cChHHHHHHHHhhhhhHHHHhchh
Confidence 233455555555544455555443
No 5
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=100.00 E-value=7.9e-33 Score=288.29 Aligned_cols=191 Identities=20% Similarity=0.362 Sum_probs=172.1
Q ss_pred CCCCCHHHHHHHHHHhh--------------hccHHHHHHHhCCCChHHHHHHHhhccCCCCccchHHHhhcccccCCCc
Q psy2072 3 LHPIVIETLMSGDELRT--------------DLVSLESQMATLGSDNIVCVLTTTSCFAPRVADNLDPIAALCQRYNIPH 68 (294)
Q Consensus 3 l~pP~~~~l~~a~~~L~--------------~lT~lG~~~~~~p~~p~~~~~ll~~~~~~c~~~~~~~i~a~~~~~~~~~ 68 (294)
||||+.++|..|++.|+ +||++|+.|+.||+||++||||+.|..++|+++ +++|||
T Consensus 450 ldpP~~~~i~~al~~L~~LgAld~~~~~~~~~LT~lG~~la~LPldPrlakmLl~a~~~~c~~e-vl~IaA--------- 519 (1294)
T PRK11131 450 VEAPDKRNIQDGVRLLEELGAITTDEQASAYKLTPLGRQLAQLPVDPRLARMVLEAQKHGCVRE-VMIITS--------- 519 (1294)
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccccCCCccCcHHHHHHHhCCCChHHHHHHHHhhhcCCHHH-HHHHHH---------
Confidence 79999999999999998 299999999999999999999999999999999 999999
Q ss_pred cccchhhhhhHhhhhccccccCChhHHHHHHHHhhhhccCCCCHhHHHHHHHHHHhcC------CChhhHHhhccCHHHH
Q psy2072 69 VINNAYGLQSTRLMKLIQEAARPNEAKKAADDAKMRFAHIDGDHLTLLNVYHAFKQNQ------EDPQWCYDNFVNYRSL 142 (294)
Q Consensus 69 ~~~~~~~~~~~~~ls~~~~f~~~~~~~~~~~~~~~~f~~~~gDhlt~l~~~~~~~~~~------~~~~~C~~~~L~~~aL 142 (294)
+||++++|.+|.+++++++.++++|.+++|||+|++|+|+.|.+.. ..++||++|+||+.+|
T Consensus 520 ------------~Lsv~dpf~~p~~~~~~a~~~~~~f~~~~sD~lt~ln~~~~~~~~~~~~s~~~~~~~C~~~~L~~~~l 587 (1294)
T PRK11131 520 ------------ALSIQDPRERPMDKQQASDEKHRRFADKESDFLAFVNLWNYLQEQQKALSSNQFRRLCRTDYLNYLRV 587 (1294)
T ss_pred ------------HHcCCCcccCCchhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHhCCCHHHH
Confidence 9999999999999999999999999999999999999999997632 2368999999999999
Q ss_pred HhHHHHHHHHHHHHHHcCccCCCCCCCChhhHHHHHHHHHhchhhhHHHHhh----------cccccCCCccCCCCCccc
Q psy2072 143 KSADNVRQQLSRIMDRFNLKRSSTEFTSKDYYINIRKSLVTGFFMQLIIVLA----------YPISSLPTVSLDQEDPQW 212 (294)
Q Consensus 143 ~~a~~Ir~QL~~~l~~~~l~~~s~~~~d~~~~l~I~kal~aG~~~nvA~~~~----------~p~~iHPsS~l~~~~~~W 212 (294)
+++.+++.||.+++++.+++..+. ..++..|++|+++|||.|+|+... .+++|||+|++++..++|
T Consensus 588 ~e~~~i~~QL~~~~~~~g~~~~~~----~~~~~~i~~all~G~~~nva~~~~~~~~y~~~~~~~~~ihP~S~L~~~~p~w 663 (1294)
T PRK11131 588 REWQDIYTQLRQVVKELGIPVNSE----PAEYREIHTALLTGLLSHIGMKDAEKQEYTGARNARFSIFPGSGLFKKPPKW 663 (1294)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCC----cccHHHHHHHHHhhcHHHHeeccCCCCeEEccCCcEEEEcCCccccCCCCCE
Confidence 999999999999999999876543 246789999999999999998752 246899999999999999
Q ss_pred c-cccccc
Q psy2072 213 C-YDNFVN 219 (294)
Q Consensus 213 C-~~~~ln 219 (294)
+ +.+.+.
T Consensus 664 vv~~Elv~ 671 (1294)
T PRK11131 664 VMVAELVE 671 (1294)
T ss_pred EEEEeeec
Confidence 8 444443
No 6
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.96 E-value=8.3e-29 Score=258.98 Aligned_cols=185 Identities=21% Similarity=0.344 Sum_probs=166.5
Q ss_pred CCCCCHHHHHHHHHHhh--------h----ccHHHHHHHhCCCChHHHHHHHhhccCCCCccchHHHhhcccccCCCccc
Q psy2072 3 LHPIVIETLMSGDELRT--------D----LVSLESQMATLGSDNIVCVLTTTSCFAPRVADNLDPIAALCQRYNIPHVI 70 (294)
Q Consensus 3 l~pP~~~~l~~a~~~L~--------~----lT~lG~~~~~~p~~p~~~~~ll~~~~~~c~~~~~~~i~a~~~~~~~~~~~ 70 (294)
||||+.+++..|++.|. . ||++|+.|+.||++|++||||+.|..++|.++ +++|||
T Consensus 443 ldpP~~~~i~~A~~~L~~LGAld~~~~~~~LT~lGr~ma~LPldPrlarmLl~a~~~gcl~e-~l~IaA----------- 510 (1283)
T TIGR01967 443 IEAPDPRAIRDGFRLLEELGALDDDEAEPQLTPIGRQLAQLPVDPRLARMLLEAHRLGCLQE-VLIIAS----------- 510 (1283)
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCCCCCccccHHHHHHhhcCCChHHHHHHHHhhhcCCHHH-HHHHHH-----------
Confidence 79999999999999998 3 99999999999999999999999999999999 999999
Q ss_pred cchhhhhhHhhhhccccccCChhHHHHHHHHhhhhccCCCCHhHHHHHHHHHHhcC------CChhhHHhhccCHHHHHh
Q psy2072 71 NNAYGLQSTRLMKLIQEAARPNEAKKAADDAKMRFAHIDGDHLTLLNVYHAFKQNQ------EDPQWCYDNFVNYRSLKS 144 (294)
Q Consensus 71 ~~~~~~~~~~~ls~~~~f~~~~~~~~~~~~~~~~f~~~~gDhlt~l~~~~~~~~~~------~~~~~C~~~~L~~~aL~~ 144 (294)
+||++++|.+|.++++++++++..|.+++|||++++|+|+.|.+.. ..++||.+|+||+.+|++
T Consensus 511 ----------~Ls~~dp~~~p~~~~~~a~~~~~~f~~~~sD~l~~L~~~~~~~~~~~~~~~~~~~~~C~~~fL~~~~l~~ 580 (1283)
T TIGR01967 511 ----------ALSIQDPRERPMEKQQAADQAHARFKDPRSDFLSRVNLWRHIEEQRQALSANQFRNACRKQYLNYLRVRE 580 (1283)
T ss_pred ----------HHcCCCcCCCcchhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhccchHHHHHHHHcCcCHHHHHH
Confidence 9999999999999999999999999999999999999999997642 236899999999999999
Q ss_pred HHHHHHHHHHHHHHcCccCCCCCCCChhhHHHHHHHHHhchhhhHHHHhh---------cccccCCCccCCCCCcccc
Q psy2072 145 ADNVRQQLSRIMDRFNLKRSSTEFTSKDYYINIRKSLVTGFFMQLIIVLA---------YPISSLPTVSLDQEDPQWC 213 (294)
Q Consensus 145 a~~Ir~QL~~~l~~~~l~~~s~~~~d~~~~l~I~kal~aG~~~nvA~~~~---------~p~~iHPsS~l~~~~~~WC 213 (294)
+.++++||.+++++.++...+. ..+...|.+++++||++|+|+... ..+.|||+|.+++..++|+
T Consensus 581 ~~~i~~QL~~~~~~~~~~~~~~----~~~~~~i~~~l~~g~~~~iA~~~~~~~y~~~~g~~~~ihP~S~L~~~~p~wv 654 (1283)
T TIGR01967 581 WQDIYRQLTQVVKELGLKLNEE----PADYDAIHKALLSGLLSQIGMKDEKHEYDGARGRKFHIFPGSPLFKKPPKWV 654 (1283)
T ss_pred HHHHHHHHHHHHHHcCCCcCCC----CccHHHHHHHHHHhhHHHHheeCCCCcEEecCCcEEEECCCccccCCCCCEE
Confidence 9999999999999888765432 234567999999999999998642 2467999999998888998
No 7
>KOG0920|consensus
Probab=99.93 E-value=1.5e-25 Score=226.34 Aligned_cols=184 Identities=20% Similarity=0.258 Sum_probs=161.7
Q ss_pred CCCCCCHHHHHHHHHHhh---------hccHHHHHHHhCCCChHHHHHHHhhccCCCCccchHHHhhcccccCCCccccc
Q psy2072 2 SLHPIVIETLMSGDELRT---------DLVSLESQMATLGSDNIVCVLTTTSCFAPRVADNLDPIAALCQRYNIPHVINN 72 (294)
Q Consensus 2 ~l~pP~~~~l~~a~~~L~---------~lT~lG~~~~~~p~~p~~~~~ll~~~~~~c~~~~~~~i~a~~~~~~~~~~~~~ 72 (294)
+||||+.+++..|++.|. +||++|+.++.+|+||++|||++.|..|+|+++ +++|||
T Consensus 585 aldpP~~~~v~~a~~~L~~igaL~~~e~LT~LG~~la~lPvd~~igK~ll~g~if~cLdp-~l~iaa------------- 650 (924)
T KOG0920|consen 585 ALDPPPADAVDLAIERLKQIGALDESEELTPLGLHLASLPVDVRIGKLLLFGAIFGCLDP-ALTIAA------------- 650 (924)
T ss_pred hcCCCChHHHHHHHHHHHHhccccCcccchHHHHHHHhCCCccccchhheehhhccccch-hhhHHH-------------
Confidence 689999999999999998 899999999999999999999999999999999 999999
Q ss_pred hhhhhhHhhhhccccccCChhHHHHHHHHhhhhccCC-CCHhHHHHHHHHHHhcC-----CChhhHHhhccCHHHHHhHH
Q psy2072 73 AYGLQSTRLMKLIQEAARPNEAKKAADDAKMRFAHID-GDHLTLLNVYHAFKQNQ-----EDPQWCYDNFVNYRSLKSAD 146 (294)
Q Consensus 73 ~~~~~~~~~ls~~~~f~~~~~~~~~~~~~~~~f~~~~-gDhlt~l~~~~~~~~~~-----~~~~~C~~~~L~~~aL~~a~ 146 (294)
+|+..+||+.|.++++.++++++.|.... ||||+++++|..|.... ...+||++++|+..+|+++.
T Consensus 651 --------~Ls~k~PF~~~~~~~~~~~~~~~~~~~~~~SD~la~~~ay~~w~~~~~~~~~~~~~fc~~~fLs~~~l~~i~ 722 (924)
T KOG0920|consen 651 --------ALSFKSPFVSPLGKREEADKAKKLLALDSISDHLAVVRAYAGWREILRSGPSAEKDFCEENFLSSNTLQEIS 722 (924)
T ss_pred --------HhccCCCcccCCCchhHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHhhccHHHHHHHH
Confidence 99999999999999999999999998665 99999999999998743 34699999999999999999
Q ss_pred HHHHHHHHHHHHcCccCCCCC-------C-CChhhHHHHHHHHHhchhhhHHHHhh---------------cccccCCCc
Q psy2072 147 NVRQQLSRIMDRFNLKRSSTE-------F-TSKDYYINIRKSLVTGFFMQLIIVLA---------------YPISSLPTV 203 (294)
Q Consensus 147 ~Ir~QL~~~l~~~~l~~~s~~-------~-~d~~~~l~I~kal~aG~~~nvA~~~~---------------~p~~iHPsS 203 (294)
+++.|+.+.+.+.++...+.. . ....+...++..+|+|+|+|+++... +.+.|||+|
T Consensus 723 ~l~~q~~~~l~~~g~~~~~~~~~~~~~~~n~~s~~~~~iravl~a~lyP~i~~~~~~~~~~~~~~~~~~~~~~v~i~~~s 802 (924)
T KOG0920|consen 723 SLRVQFLELLSDIGLIPISSTAALTDSECNHNSQNPELVRAVLCAGLYPNIAFVRRMEPKSKSVTFVTKADGRVIIHPSS 802 (924)
T ss_pred HHHHHHHHHhhhcccccCCcccccCchhhhhcCCCHHHHHHHHhccCCCceeeeecccCCcCcceeecCCceeEEEecch
Confidence 999999999999988654321 1 11235667888899999999998763 235799999
Q ss_pred cCCC
Q psy2072 204 SLDQ 207 (294)
Q Consensus 204 ~l~~ 207 (294)
++..
T Consensus 803 v~~~ 806 (924)
T KOG0920|consen 803 VNEQ 806 (924)
T ss_pred hhcc
Confidence 7654
No 8
>KOG0925|consensus
Probab=99.85 E-value=7.5e-22 Score=185.01 Aligned_cols=135 Identities=41% Similarity=0.699 Sum_probs=115.5
Q ss_pred hhhHHhhccCHHHHHhHHHHHH--------HHHHHHHHcCccCCCCCCCChhhHHHHHHHHHhchhhhHHHHhhcccccC
Q psy2072 129 PQWCYDNFVNYRSLKSADNVRQ--------QLSRIMDRFNLKRSSTEFTSKDYYINIRKSLVTGFFMQLIIVLAYPISSL 200 (294)
Q Consensus 129 ~~~C~~~~L~~~aL~~a~~Ir~--------QL~~~l~~~~l~~~s~~~~d~~~~l~I~kal~aG~~~nvA~~~~~p~~iH 200 (294)
.-.|..+.|++.+|+++-+.+- ...+..+++. .. .|||.++++|+.|+..
T Consensus 479 efnCsnEiLsisAMLsvPncFvRp~~~a~kaAdeak~~fa----H~-dGDHlTLlnVYhAfkq----------------- 536 (699)
T KOG0925|consen 479 EFNCSNEILSISAMLSVPNCFVRPTSSASKAADEAKETFA----HI-DGDHLTLLNVYHAFKQ----------------- 536 (699)
T ss_pred CCCchHHHHHHHhcccCCccccCCChhHHHHHHHHHHHhc----cC-CcchHHHHHHHHHHHh-----------------
Confidence 3579999999999999976522 2222333332 22 2789999999999965
Q ss_pred CCccCCCCCccccccccccccccccHHHHHHHHHHHHHHcCCCCCCCCCCCcchhhhHHHHHHhhhhhhHH-------HH
Q psy2072 201 PTVSLDQEDPQWCYDNFVNYRSLKSADNVRQQLSRIMDRFNLKRSSTEFTSKDYYINIRKSLVTGFFMQDY-------YI 273 (294)
Q Consensus 201 PsS~l~~~~~~WC~~~~ln~r~L~~a~~ir~QL~~~~~~~~~~~~s~~~~~~~~~~~i~k~l~~Gff~n~A-------~~ 273 (294)
.+..++||++||+|||+|+.|.+||+||.++++|+.++..+..+.+.+.+.+|||||++||||++| |.
T Consensus 537 -----~~~~~~WC~~~flN~ral~~Ad~vR~qL~rim~R~~L~~~st~F~S~~y~~nirKALvsgyFmqVA~~~~~~~Yl 611 (699)
T KOG0925|consen 537 -----NNEDPNWCYDNFLNYRALKSADNVRQQLLRIMDRFNLPLCSTDFGSRDYYVNIRKALVSGYFMQVAHLERGGHYL 611 (699)
T ss_pred -----cCCChhHHHHhcccHHHHHhHHHHHHHHHHHHHHhcCcccCCCCCChhHHHHHHHHHHHHHHHHHHhhccCCceE
Confidence 457889999999999999999999999999999999999999999999999999999999999998 67
Q ss_pred HhcCCcEEEEecCCccc
Q psy2072 274 NIRKSLVTGFFMQCLLG 290 (294)
Q Consensus 274 ~~~~~~~v~ihPsS~l~ 290 (294)
++.++++|++||+++|.
T Consensus 612 t~kdnqvvqLhps~~l~ 628 (699)
T KOG0925|consen 612 TVKDNQVVQLHPSTCLD 628 (699)
T ss_pred EEecCceEEeccccccC
Confidence 88899999999999986
No 9
>KOG0926|consensus
Probab=99.85 E-value=9.6e-21 Score=185.71 Aligned_cols=192 Identities=16% Similarity=0.231 Sum_probs=155.6
Q ss_pred CCCCHHHHHHHHHHhh---------hccHHHHHHHhCCCChHHHHHHHhhccCCCCccchHHHhhcccccCCCccccchh
Q psy2072 4 HPIVIETLMSGDELRT---------DLVSLESQMATLGSDNIVCVLTTTSCFAPRVADNLDPIAALCQRYNIPHVINNAY 74 (294)
Q Consensus 4 ~pP~~~~l~~a~~~L~---------~lT~lG~~~~~~p~~p~~~~~ll~~~~~~c~~~~~~~i~a~~~~~~~~~~~~~~~ 74 (294)
+||...+|.+|++.|. .||++|+.|+.||++|+++|||+.+.+.+|... .+.+++
T Consensus 745 tpPd~~~L~~Aer~L~~LgALd~~g~lT~lGk~mS~FPlsPrfsKmL~~~~Q~~~lpy-~i~lvs--------------- 808 (1172)
T KOG0926|consen 745 TPPDRSALEKAERRLKALGALDSNGGLTKLGKAMSLFPLSPRFSKMLATSDQHNLLPY-NIALVS--------------- 808 (1172)
T ss_pred CCccHHHHHHHHHHHHHhccccccCCcccccchhcccccChhHHHHHHHHHhhcchhH-HHHHHH---------------
Confidence 4899999999999997 799999999999999999999999999999999 888888
Q ss_pred hhhhHhhhhccccccC--------------ChhH------------------HHHHHHHhhhhccCCCCHhHHHHHHHHH
Q psy2072 75 GLQSTRLMKLIQEAAR--------------PNEA------------------KKAADDAKMRFAHIDGDHLTLLNVYHAF 122 (294)
Q Consensus 75 ~~~~~~~ls~~~~f~~--------------~~~~------------------~~~~~~~~~~f~~~~gDhlt~l~~~~~~ 122 (294)
+||+..+|+. |.++ +.....++.+|...++|.++++.+..++
T Consensus 809 ------aLsv~e~~i~~~~ll~n~~~r~~~~eE~d~~~~de~~~d~~~K~~rr~~~~aa~~rf~~l~sd~l~Ll~Av~a~ 882 (1172)
T KOG0926|consen 809 ------ALSVYEVLIVAASLLPNPLIREFEPEEKDLIKDDETVEDKELKKRRREKSKAARSRFSNLDSDALVLLSAVSAA 882 (1172)
T ss_pred ------HHhccchhhhhhhcccccccccCCcchhhccccccccccHHHHHHHHHHHHHHHhhhccCCccHHHHHHHHHHH
Confidence 6776666542 1110 0112335667888899999999999999
Q ss_pred HhcCCChhhHHhhccCHHHHHhHHHHHHHHHHHHHHcCc-------cCCCCCCCChhhHHHHHHHHHhchhhhHHHHh--
Q psy2072 123 KQNQEDPQWCYDNFVNYRSLKSADNVRQQLSRIMDRFNL-------KRSSTEFTSKDYYINIRKSLVTGFFMQLIIVL-- 193 (294)
Q Consensus 123 ~~~~~~~~~C~~~~L~~~aL~~a~~Ir~QL~~~l~~~~l-------~~~s~~~~d~~~~l~I~kal~aG~~~nvA~~~-- 193 (294)
+..++...||..+||..++|.++.++|+||..+..+.+. +..... +.......+++.+|+||.++||+..
T Consensus 883 ey~~~~~rfc~~ngLr~Kam~Ev~KLR~QL~~lv~~~~i~~v~~~~d~~l~p-pt~~q~~lLrQ~i~Ag~~DrVArk~~~ 961 (1172)
T KOG0926|consen 883 EYAENGMRFCEANGLRLKAMEEVRKLRKQLTNLVNHGNIQDVEKSWDLTLKP-PTDTQAKLLRQMICAGFADRVARKVDA 961 (1172)
T ss_pred HhhhhcchhHHhcchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcccCCCC-CchHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999888889999999999999999999999998874433 222211 2334556778889999999999964
Q ss_pred --------hcccccCCCccCCCCCcccc-ccccc
Q psy2072 194 --------AYPISSLPTVSLDQEDPQWC-YDNFV 218 (294)
Q Consensus 194 --------~~p~~iHPsS~l~~~~~~WC-~~~~l 218 (294)
..|++||+.|++++..|+|+ +...+
T Consensus 962 ~~y~~~~i~~~~fl~~~svl~~~ape~viY~el~ 995 (1172)
T KOG0926|consen 962 TEYDAAKIQEPVFLHRWSVLINSAPELVIYQELL 995 (1172)
T ss_pred cccchhhhcCceeeeehhhhhccCccceehhhhh
Confidence 25789999999999999997 55444
No 10
>KOG0924|consensus
Probab=99.83 E-value=1.2e-21 Score=189.51 Aligned_cols=134 Identities=19% Similarity=0.329 Sum_probs=113.5
Q ss_pred hhhHHhhccCHHHHHhHHHHHHHHHHHHHH-----cCccCCCCCCCChhhHHHHHHHHHhchhhhHHHHhhcccccCCCc
Q psy2072 129 PQWCYDNFVNYRSLKSADNVRQQLSRIMDR-----FNLKRSSTEFTSKDYYINIRKSLVTGFFMQLIIVLAYPISSLPTV 203 (294)
Q Consensus 129 ~~~C~~~~L~~~aL~~a~~Ir~QL~~~l~~-----~~l~~~s~~~~d~~~~l~I~kal~aG~~~nvA~~~~~p~~iHPsS 203 (294)
.-.|.++.|++.+|+++..++-...+.-+. .++.. ..+||.|++||+..|..
T Consensus 789 ~~Gc~dEilsIvSmLSvp~VF~rpker~eead~ar~Kf~~---~~sDhLTlLNVf~qw~~-------------------- 845 (1042)
T KOG0924|consen 789 RMGCSDEILSIVSMLSVPAVFYRPKEREEEADAAREKFQV---PESDHLTLLNVFNQWRK-------------------- 845 (1042)
T ss_pred ccCcHHHHHHHHHHhcccceeeccccchhhhhhHHhhhcC---CCCchhhHHHHHHHHHh--------------------
Confidence 468999999999999999886432222221 12221 23688999999999965
Q ss_pred cCCCCCccccccccccccccccHHHHHHHHHHHHHHcCCCCCCCCCCCcchhhhHHHHHHhhhhhhHH-------HHHhc
Q psy2072 204 SLDQEDPQWCYDNFVNYRSLKSADNVRQQLSRIMDRFNLKRSSTEFTSKDYYINIRKSLVTGFFMQDY-------YINIR 276 (294)
Q Consensus 204 ~l~~~~~~WC~~~~ln~r~L~~a~~ir~QL~~~~~~~~~~~~s~~~~~~~~~~~i~k~l~~Gff~n~A-------~~~~~ 276 (294)
.+++..||.+|+++.++|++|++||+||..+++.+++++.|+ ++++.|+||||+|||.|+| |++++
T Consensus 846 --~~~~~~WCnd~~l~~kaL~~arevR~ql~~il~~l~~~l~S~-----~dwdivrKCIcs~~fhn~Arlkg~g~YV~~~ 918 (1042)
T KOG0924|consen 846 --NKYSSMWCNDHYLQVKALKKAREVRRQLLEILKQLKLPLISS-----DDWDIVRKCICSAYFHNAARLKGIGEYVNLS 918 (1042)
T ss_pred --cCCchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHcCCCcccC-----chHHHHHHHHHHHHHHHHHHhccCceEEEcc
Confidence 577889999999999999999999999999999999999885 4799999999999999999 67899
Q ss_pred CCcEEEEecCCccccc
Q psy2072 277 KSLVTGFFMQCLLGII 292 (294)
Q Consensus 277 ~~~~v~ihPsS~l~~~ 292 (294)
+|..+++||+|+|.+.
T Consensus 919 tg~~c~lHPsS~L~g~ 934 (1042)
T KOG0924|consen 919 TGIPCHLHPSSVLHGL 934 (1042)
T ss_pred CCcceeecchHhhhcC
Confidence 9999999999999887
No 11
>KOG0922|consensus
Probab=99.83 E-value=1.2e-21 Score=189.96 Aligned_cols=136 Identities=27% Similarity=0.381 Sum_probs=111.0
Q ss_pred CChhhHHhhccCHHHHHhHHHHHHHHHHHHH------HcCccCCCCCCCChhhHHHHHHHHHhchhhhHHHHhhcccccC
Q psy2072 127 EDPQWCYDNFVNYRSLKSADNVRQQLSRIMD------RFNLKRSSTEFTSKDYYINIRKSLVTGFFMQLIIVLAYPISSL 200 (294)
Q Consensus 127 ~~~~~C~~~~L~~~aL~~a~~Ir~QL~~~l~------~~~l~~~s~~~~d~~~~l~I~kal~aG~~~nvA~~~~~p~~iH 200 (294)
...-.|.++.+.+.+|+++++++....+... +..+. ...+|+.++++|++.|..
T Consensus 480 s~~~gc~~e~l~i~a~Lsv~~~f~~p~~~~~~~a~~~~~kf~---~~eGDh~tlL~vy~~~~~----------------- 539 (674)
T KOG0922|consen 480 SSELGCSEEILTIAAMLSVQSVFSRPKDKKAEDADRKRAKFA---NPEGDHLTLLNVYESWKE----------------- 539 (674)
T ss_pred ccccCCcchhhhheeeeeccceecCccchhhhhhhHHHHhhc---CcccCHHHHHHHHHHHHh-----------------
Confidence 3467899999999999999988432222211 12221 123689999999998854
Q ss_pred CCccCCCCCccccccccccccccccHHHHHHHHHHHHHHcCCCCCCCCCCCcchhhhHHHHHHhhhhhhHH-------HH
Q psy2072 201 PTVSLDQEDPQWCYDNFVNYRSLKSADNVRQQLSRIMDRFNLKRSSTEFTSKDYYINIRKSLVTGFFMQDY-------YI 273 (294)
Q Consensus 201 PsS~l~~~~~~WC~~~~ln~r~L~~a~~ir~QL~~~~~~~~~~~~s~~~~~~~~~~~i~k~l~~Gff~n~A-------~~ 273 (294)
.+.+.+||++||+|+|+|++|.+||+||++++++++++..+|+ .+.+.||||||+|||+|+| |+
T Consensus 540 -----~~~~~~wC~en~i~~r~l~~a~~ir~QL~~i~~~~~~~~~s~~----~d~~~i~k~l~aGff~N~A~~~~~~~Yr 610 (674)
T KOG0922|consen 540 -----NGTSKKWCKENFINARSLKRAKDIRKQLRRILDKFGLPVSSCG----GDMEKIRKCLCAGFFRNVAERDYQDGYR 610 (674)
T ss_pred -----cCChhhHHHHhcccHHHHHHHHHHHHHHHHHHHHcCCCccCCC----CCHHHHHHHHHHHHHHHHHHhhcCCCeE
Confidence 5778899999999999999999999999999999999997754 4568999999999999998 56
Q ss_pred HhcCCcEEEEecCCcccc
Q psy2072 274 NIRKSLVTGFFMQCLLGI 291 (294)
Q Consensus 274 ~~~~~~~v~ihPsS~l~~ 291 (294)
++.+|+.|+|||||+|..
T Consensus 611 ti~~~~~v~IHPSS~l~~ 628 (674)
T KOG0922|consen 611 TIRGGQPVYIHPSSVLFR 628 (674)
T ss_pred EccCCcEEEEechHHhhc
Confidence 788999999999999853
No 12
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.81 E-value=1.3e-19 Score=183.79 Aligned_cols=188 Identities=19% Similarity=0.210 Sum_probs=153.1
Q ss_pred CCCCCHHHHHHHHHHhh---------hccHHHHHHHhCCCChHHHHHHHhhccCCCCccchHHHhhcccccCCCccccch
Q psy2072 3 LHPIVIETLMSGDELRT---------DLVSLESQMATLGSDNIVCVLTTTSCFAPRVADNLDPIAALCQRYNIPHVINNA 73 (294)
Q Consensus 3 l~pP~~~~l~~a~~~L~---------~lT~lG~~~~~~p~~p~~~~~ll~~~~~~c~~~~~~~i~a~~~~~~~~~~~~~~ 73 (294)
+|||+..++..|++.|. .||++|++|+.||+||++|+||+.+...+|.++ +++|+|
T Consensus 427 ld~P~~~~i~~A~~~L~~LGAld~~g~LT~lG~~ms~lpldprLA~mLl~a~~~g~~~e-~~~Ias-------------- 491 (845)
T COG1643 427 LDPPPEAAIQAALTLLQELGALDDSGKLTPLGKQMSLLPLDPRLARMLLTAPEGGCLGE-AATIAS-------------- 491 (845)
T ss_pred CCCCChHHHHHHHHHHHHcCCcCCCCCCCHHHHHHHhCCCChHHHHHHHhccccCcHHH-HHHHHH--------------
Confidence 68999999999999998 799999999999999999999999999999999 999999
Q ss_pred hhhhhHhhhhccc---cccCChhHHH---HHHHHh-hhhcc---CCCCHhHHHHHHHHHHhcC------CChhhHHhhcc
Q psy2072 74 YGLQSTRLMKLIQ---EAARPNEAKK---AADDAK-MRFAH---IDGDHLTLLNVYHAFKQNQ------EDPQWCYDNFV 137 (294)
Q Consensus 74 ~~~~~~~~ls~~~---~f~~~~~~~~---~~~~~~-~~f~~---~~gDhlt~l~~~~~~~~~~------~~~~~C~~~~L 137 (294)
+||+++ .|..+.+.++ ..+.++ .++.+ +.+||++++++|..|...+ ...+||..+.+
T Consensus 492 -------~Ls~~~~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~~~ll~~~~~~i~~~~~~~~~~~~~~~~~~~~ 564 (845)
T COG1643 492 -------MLSEQDRESDFSRDVKLRKQRTAQDLLKRLKRRNAADPRGDHLLLLEAFPDRIARKRAKGEYLRANGCRAMLF 564 (845)
T ss_pred -------hhccCCCcchhccccchhhHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHhhhccchhhHhcChhhhcC
Confidence 999988 6887766655 333333 34545 6899999999999999877 67899999999
Q ss_pred CHHHHHhHHHHHHHHHHHHHH-cCccCCCCCC---------------CChhhHHHHHHHHHhchhhhHHHHhh-------
Q psy2072 138 NYRSLKSADNVRQQLSRIMDR-FNLKRSSTEF---------------TSKDYYINIRKSLVTGFFMQLIIVLA------- 194 (294)
Q Consensus 138 ~~~aL~~a~~Ir~QL~~~l~~-~~l~~~s~~~---------------~d~~~~l~I~kal~aG~~~nvA~~~~------- 194 (294)
+..+|..+..++.++.....+ .+......+. .+. .+..+.+++++|++.|++.+..
T Consensus 565 ~~~~L~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~~~~~l~a~~~~~~~~~~~~~~~~~~ 643 (845)
T COG1643 565 PTKALSRAPWIIAALLVQTSALAGRILAAAEIDEDEWAAQHLPEHCYSEP-IWDDIRGALAAGRKLNIAQLQLDGRPYVT 643 (845)
T ss_pred ChhHHHhhHHHHHHHHHhhhccccchhhhcccCcchhhhhhhhhhhccch-hHHHHhhhhhhheecceeeeecccccccc
Confidence 999999999998887776665 3332221111 112 4678899999999999998753
Q ss_pred ----cccccCCCc-cCCCCCcccc
Q psy2072 195 ----YPISSLPTV-SLDQEDPQWC 213 (294)
Q Consensus 195 ----~p~~iHPsS-~l~~~~~~WC 213 (294)
.++.+||++ .......+|.
T Consensus 644 ~~~~~~v~~~~~~v~~~~~~~~~~ 667 (845)
T COG1643 644 LSDNTPVFAHPSSVRLGLVLLEWI 667 (845)
T ss_pred CCCCceeEecchhHhhcccCcchH
Confidence 346799999 5666677886
No 13
>PF04408 HA2: Helicase associated domain (HA2); InterPro: IPR007502 This presumed domain is about 90 amino acid residues in length. It is found as a diverse set of RNA helicases. Its function is unknown, however it seems likely to be involved in nucleic acid binding.; GO: 0004386 helicase activity; PDB: 3I4U_A 2XAU_B 3KX2_B.
Probab=99.68 E-value=3.3e-17 Score=127.27 Aligned_cols=82 Identities=26% Similarity=0.318 Sum_probs=56.6
Q ss_pred HHHHHhh---------hccHHHHHHHhCCCChHHHHHHHhhccCCCCccchHHHhhcccccCCCccccchhhhhhHhhhh
Q psy2072 13 SGDELRT---------DLVSLESQMATLGSDNIVCVLTTTSCFAPRVADNLDPIAALCQRYNIPHVINNAYGLQSTRLMK 83 (294)
Q Consensus 13 ~a~~~L~---------~lT~lG~~~~~~p~~p~~~~~ll~~~~~~c~~~~~~~i~a~~~~~~~~~~~~~~~~~~~~~~ls 83 (294)
+|++.|+ +||++|+.|+.||++|++||||+.|..++|.++ +++|+| +||
T Consensus 1 ~A~~~L~~Lgald~~~~lT~lG~~~~~lPl~p~~a~~Ll~~~~~~~~~~-~~~iaa---------------------~ls 58 (102)
T PF04408_consen 1 KALELLKSLGALDENGNLTPLGRKMSQLPLDPRLAKMLLYGIQFGCLDE-ALIIAA---------------------ILS 58 (102)
T ss_dssp -HHHHHHHTTSB-TTS-B-HHHHHHTTSSS-HHHHHHHHHHHHCT-HHH-HHHHHH---------------------HHT
T ss_pred CHHHHHHHCCCCCCCCCcCHHHHHHHHCCCchHhHhHhhhccccccHHH-HHHHHH---------------------HHc
Confidence 3566665 799999999999999999999999999999999 999999 999
Q ss_pred ccccccCChhHHHH--HHHHh---------hhhccCCCCHhHHH
Q psy2072 84 LIQEAARPNEAKKA--ADDAK---------MRFAHIDGDHLTLL 116 (294)
Q Consensus 84 ~~~~f~~~~~~~~~--~~~~~---------~~f~~~~gDhlt~l 116 (294)
++++|..+.++++. .+..+ ..+.+..|||+|+|
T Consensus 59 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sDhltlL 102 (102)
T PF04408_consen 59 VRSPFINPDDKEENAEQDNAKKKFRIKQARKKFSDDESDHLTLL 102 (102)
T ss_dssp SS--B---CCGHHHHHH--HHHTT----------BTTBHHHHHH
T ss_pred CCCcccCccHHHHHHHHHHHHHHhhhhhcccccCCCCCCHHhcC
Confidence 99999987543322 22233 34578899999986
No 14
>smart00847 HA2 Helicase associated domain (HA2) Add an annotation. This presumed domain is about 90 amino acid residues in length. It is found is a diverse set of RNA helicases. Its function is unknown, however it seems likely to be involved in nucleic acid binding.
Probab=99.59 E-value=1.5e-15 Score=115.37 Aligned_cols=74 Identities=32% Similarity=0.407 Sum_probs=66.7
Q ss_pred hccHHHHHHHhCCCChHHHHHHHhhccC-CCCccchHHHhhcccccCCCccccchhhhhhHhhhhccccccCChhHHHHH
Q psy2072 20 DLVSLESQMATLGSDNIVCVLTTTSCFA-PRVADNLDPIAALCQRYNIPHVINNAYGLQSTRLMKLIQEAARPNEAKKAA 98 (294)
Q Consensus 20 ~lT~lG~~~~~~p~~p~~~~~ll~~~~~-~c~~~~~~~i~a~~~~~~~~~~~~~~~~~~~~~~ls~~~~f~~~~~~~~~~ 98 (294)
+||++|+.|+.||++|++||||+.+..+ +|.++ +++|+| +++..++|..+ .++...
T Consensus 17 ~lT~lG~~m~~lPl~Prla~~Ll~a~~~~~c~~~-~~~i~a---------------------~ls~~~~~~~~-~~~~~~ 73 (92)
T smart00847 17 RLTPLGRKMAELPLDPRLAKMLLAAAELFGCLDE-ILTIAA---------------------MLSVGDPFPRP-EKRAEA 73 (92)
T ss_pred CcCHHHHHHHHCCCChHHHHHHHHHHhhcCcHHH-HHHHHH---------------------HhcCCCCcCCc-hHHHHH
Confidence 7999999999999999999999999999 89999 999999 99999988776 455667
Q ss_pred HHHhhhhccC-CCCHhHHH
Q psy2072 99 DDAKMRFAHI-DGDHLTLL 116 (294)
Q Consensus 99 ~~~~~~f~~~-~gDhlt~l 116 (294)
+..+..|.+. .|||++++
T Consensus 74 ~~~~~~~~~~~~~D~~~~l 92 (92)
T smart00847 74 DAARRRFASGRESDHLTLL 92 (92)
T ss_pred HHHHHHccCCCCCChhhhC
Confidence 7788899888 89999864
No 15
>KOG0923|consensus
Probab=99.52 E-value=3.9e-15 Score=144.39 Aligned_cols=131 Identities=24% Similarity=0.444 Sum_probs=105.9
Q ss_pred HHhhccCHHHHHhHH-HHHHHHHHHH-----HHcCccCCCCCCCChhhHHHHHHHHHhchhhhHHHHhhcccccCCCccC
Q psy2072 132 CYDNFVNYRSLKSAD-NVRQQLSRIM-----DRFNLKRSSTEFTSKDYYINIRKSLVTGFFMQLIIVLAYPISSLPTVSL 205 (294)
Q Consensus 132 C~~~~L~~~aL~~a~-~Ir~QL~~~l-----~~~~l~~~s~~~~d~~~~l~I~kal~aG~~~nvA~~~~~p~~iHPsS~l 205 (294)
|.++.+.+.+|+++- .++....+.. .+.++. ...+||..+++|+..|..
T Consensus 701 cs~EiitiaamlS~~~svfyrpk~~~v~ad~a~~~f~---~~~gDhi~~L~vyn~w~e---------------------- 755 (902)
T KOG0923|consen 701 CSEEIITIAAMLSVGASVFYRPKDKQVHADNARKNFE---EPVGDHIVLLNVYNQWKE---------------------- 755 (902)
T ss_pred chHHHHHHHHHHhcCchheecchhhhhhhhhhhhccC---CCCcchhhhhHHHHHHhh----------------------
Confidence 999999999999985 4543333211 111221 124688899999988854
Q ss_pred CCCCccccccccccccccccHHHHHHHHHHHHHHcCCCCCCCCCCCcchhhhHHHHHHhhhhhhHH-------HHHhcCC
Q psy2072 206 DQEDPQWCYDNFVNYRSLKSADNVRQQLSRIMDRFNLKRSSTEFTSKDYYINIRKSLVTGFFMQDY-------YINIRKS 278 (294)
Q Consensus 206 ~~~~~~WC~~~~ln~r~L~~a~~ir~QL~~~~~~~~~~~~s~~~~~~~~~~~i~k~l~~Gff~n~A-------~~~~~~~ 278 (294)
.+++.+||++||+.+|+|.+|++||.||..++.+.++...|+. .+...||+|+++|||.|+| |+++...
T Consensus 756 s~~s~~wC~e~~iq~~sm~rardir~qL~gll~~v~~~~~s~~----~~~~~irk~i~aGff~h~a~l~~~g~y~tvk~~ 831 (902)
T KOG0923|consen 756 SKYSTQWCYENFIQYRSMKRARDIRDQLEGLLERVEIDLSSNQ----NDLDKIRKAITAGFFYHTAKLSKGGHYRTVKHP 831 (902)
T ss_pred cchhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhccccccCCh----HHHHHHHHHHhccccccceeccCCCcceeeccC
Confidence 5778899999999999999999999999999999999887743 3567899999999999997 8899999
Q ss_pred cEEEEecCCcccc
Q psy2072 279 LVTGFFMQCLLGI 291 (294)
Q Consensus 279 ~~v~ihPsS~l~~ 291 (294)
+.|++||.|++..
T Consensus 832 ~tv~~hp~S~l~~ 844 (902)
T KOG0923|consen 832 QTVSIHPNSGLFE 844 (902)
T ss_pred cceeecCcccccc
Confidence 9999999998754
No 16
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.38 E-value=3.3e-13 Score=142.23 Aligned_cols=138 Identities=15% Similarity=0.197 Sum_probs=101.3
Q ss_pred hhhHHhhccCHHHHHhHHHHHHH-------HHHHHHHcCccCCCCCCCChhhHHHHHHHHHhchhhhHHHHhhcccccCC
Q psy2072 129 PQWCYDNFVNYRSLKSADNVRQQ-------LSRIMDRFNLKRSSTEFTSKDYYINIRKSLVTGFFMQLIIVLAYPISSLP 201 (294)
Q Consensus 129 ~~~C~~~~L~~~aL~~a~~Ir~Q-------L~~~l~~~~l~~~s~~~~d~~~~l~I~kal~aG~~~nvA~~~~~p~~iHP 201 (294)
...|.++.+.+.+++++.+.+.. .....+++. ...+|+.++++++..+... -...
T Consensus 507 ~~~c~~evl~IaA~Lsv~dpf~~p~~~~~~a~~~~~~f~-----~~~sD~lt~ln~~~~~~~~----~~~~--------- 568 (1294)
T PRK11131 507 KHGCVREVMIITSALSIQDPRERPMDKQQASDEKHRRFA-----DKESDFLAFVNLWNYLQEQ----QKAL--------- 568 (1294)
T ss_pred hcCCHHHHHHHHHHHcCCCcccCCchhHHHHHHHHHhhC-----CCCCCHHHHHHHHHHHHHH----Hhhh---------
Confidence 35799999999999999776421 122222231 2346888999998876431 0000
Q ss_pred CccCCCCCccccccccccccccccHHHHHHHHHHHHHHcCCCCCCCCCCCcchhhhHHHHHHhhhhhhHHHHH-------
Q psy2072 202 TVSLDQEDPQWCYDNFVNYRSLKSADNVRQQLSRIMDRFNLKRSSTEFTSKDYYINIRKSLVTGFFMQDYYIN------- 274 (294)
Q Consensus 202 sS~l~~~~~~WC~~~~ln~r~L~~a~~ir~QL~~~~~~~~~~~~s~~~~~~~~~~~i~k~l~~Gff~n~A~~~------- 274 (294)
..+..++||.+||||+++|+.+.+||+||.++++++|++..++ +.+++.|++||++|||.|+|.+.
T Consensus 569 ---s~~~~~~~C~~~~L~~~~l~e~~~i~~QL~~~~~~~g~~~~~~----~~~~~~i~~all~G~~~nva~~~~~~~~y~ 641 (1294)
T PRK11131 569 ---SSNQFRRLCRTDYLNYLRVREWQDIYTQLRQVVKELGIPVNSE----PAEYREIHTALLTGLLSHIGMKDAEKQEYT 641 (1294)
T ss_pred ---cchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHcCCCCCCC----cccHHHHHHHHHhhcHHHHeeccCCCCeEE
Confidence 0122357999999999999999999999999999999987653 24578999999999999998432
Q ss_pred hcCCcEEEEecCCcccc
Q psy2072 275 IRKSLVTGFFMQCLLGI 291 (294)
Q Consensus 275 ~~~~~~v~ihPsS~l~~ 291 (294)
...|..|+|||+|+|..
T Consensus 642 ~~~~~~~~ihP~S~L~~ 658 (1294)
T PRK11131 642 GARNARFSIFPGSGLFK 658 (1294)
T ss_pred ccCCcEEEEcCCccccC
Confidence 12377999999999854
No 17
>KOG0921|consensus
Probab=99.13 E-value=4.8e-11 Score=119.39 Aligned_cols=183 Identities=11% Similarity=0.070 Sum_probs=136.8
Q ss_pred CCCCCCHHHHHHHHHHhh---------hccHHHHHHHhCCCChHHHHHHHhhccCCCCccchHHHhhcccccCCCccccc
Q psy2072 2 SLHPIVIETLMSGDELRT---------DLVSLESQMATLGSDNIVCVLTTTSCFAPRVADNLDPIAALCQRYNIPHVINN 72 (294)
Q Consensus 2 ~l~pP~~~~l~~a~~~L~---------~lT~lG~~~~~~p~~p~~~~~ll~~~~~~c~~~~~~~i~a~~~~~~~~~~~~~ 72 (294)
||.||+..+++.+...|. .+|++|+.++.+|++|++++|++.+.-++|.+- |+..|+
T Consensus 814 al~~~p~dav~e~e~~l~~m~~ld~n~elt~lg~~la~l~iep~~~k~~~lg~~~g~~~~-m~~~as------------- 879 (1282)
T KOG0921|consen 814 ALQPPPYDAVIEAEAVLREMGALDANDELTPLGRMLARLPIEPRIGKMMILGTALGAGSV-MCDVAS------------- 879 (1282)
T ss_pred ccCCCchhhccCchHHHHHhhhhhccCcccchhhhhhhccCcccccceeeechhhccchh-hhhhhc-------------
Confidence 688999999888877776 799999999999999999999999999999999 999998
Q ss_pred hhhhhhHhhhhccccccCChh-----HHHHHHHHhhhhcc-CCCCHhHHHHHHHHHHhcCCChhhHHhhccCHHHHHhHH
Q psy2072 73 AYGLQSTRLMKLIQEAARPNE-----AKKAADDAKMRFAH-IDGDHLTLLNVYHAFKQNQEDPQWCYDNFVNYRSLKSAD 146 (294)
Q Consensus 73 ~~~~~~~~~ls~~~~f~~~~~-----~~~~~~~~~~~f~~-~~gDhlt~l~~~~~~~~~~~~~~~C~~~~L~~~aL~~a~ 146 (294)
.+|...+|..-.. ..++..-++.+|++ -.+||.+.+..+..|......++||...+++...|....
T Consensus 880 --------~~s~~~~~~~~~~~~~rl~g~q~~~~g~kfsdhva~~~v~q~~r~~~q~ga~~e~efc~r~~l~~~~~~~t~ 951 (1282)
T KOG0921|consen 880 --------AMSFPTPFVPREKHHSRLSGTQRKFAGNKFSDHVAIVSVIQGYREAVQMGAAAEREFCERYSLSNPVLKMTD 951 (1282)
T ss_pred --------ccccccccccccccccccccchhhccccccccchhhhhhhhhhHHHhhhhhhhhhhHhHhhhhcchhhhhhh
Confidence 7777666653211 11223344555553 356777777778888777677899999999999999999
Q ss_pred HHHHHHHHHHHHcCccCCCC------CCCChhhHHHHHHHHHhchhhhHHHHhhc---------ccccCCCccCC
Q psy2072 147 NVRQQLSRIMDRFNLKRSST------EFTSKDYYINIRKSLVTGFFMQLIIVLAY---------PISSLPTVSLD 206 (294)
Q Consensus 147 ~Ir~QL~~~l~~~~l~~~s~------~~~d~~~~l~I~kal~aG~~~nvA~~~~~---------p~~iHPsS~l~ 206 (294)
..+.|+...+++..++.... -.+++.+...++..+++++++|++..... ..-||-.|++.
T Consensus 952 ~a~~ql~d~L~q~~fpe~~~~~~~v~~ng~d~~l~~~~~lL~~~lypn~~~y~ekrkvLtTe~~~alihk~Svnc 1026 (1282)
T KOG0921|consen 952 GARRQLIDVLRQCSFPEDILFDISVNVNGPDRELNLMRSLLVMALYPNVAYYVEKRKVLTTEQSSALIHKYSVNC 1026 (1282)
T ss_pred hhHHHHHHHHHhccCccccccceeeccCCCCchhHHHHHHHHhhcCCccceeccceeEEeecchhhhhhhhcccC
Confidence 99999999999877653211 01233455556667789989988876531 12466666543
No 18
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=98.98 E-value=5.3e-09 Score=107.91 Aligned_cols=56 Identities=21% Similarity=0.221 Sum_probs=49.9
Q ss_pred CCCCCHHHHHHHHHHhh---------hccHHHHHHHhCCCChHHHHHHHhhccCCCCc--cchHHHhh
Q psy2072 3 LHPIVIETLMSGDELRT---------DLVSLESQMATLGSDNIVCVLTTTSCFAPRVA--DNLDPIAA 59 (294)
Q Consensus 3 l~pP~~~~l~~a~~~L~---------~lT~lG~~~~~~p~~p~~~~~ll~~~~~~c~~--~~~~~i~a 59 (294)
||||+.+++.+|++.|. +||++|+.|++||++|++|+||+.|..++|.. . ++.|+|
T Consensus 378 ld~P~~~~~~~A~~~L~~lgald~~g~lT~~G~~m~~lp~~Prla~~ll~a~~~~~~~l~~-a~~laa 444 (812)
T PRK11664 378 LDQPPAAALAAAKRLLQQLGALDGQGRLTARGRKMAALGNDPRLAAMLVAAKEDDEAALAT-AAKLAA 444 (812)
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCCCCcCHHHHHHHhcCCchHHHHHHHHHHhcCchhhHH-HHHHHH
Confidence 79999999999999998 79999999999999999999999999988543 4 555555
No 19
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=98.98 E-value=5.5e-10 Score=118.51 Aligned_cols=137 Identities=16% Similarity=0.192 Sum_probs=97.4
Q ss_pred hhHHhhccCHHHHHhHHHHHH-------HHHHHHHHcCccCCCCCCCChhhHHHHHHHHHhchhhhHHHHhhcccccCCC
Q psy2072 130 QWCYDNFVNYRSLKSADNVRQ-------QLSRIMDRFNLKRSSTEFTSKDYYINIRKSLVTGFFMQLIIVLAYPISSLPT 202 (294)
Q Consensus 130 ~~C~~~~L~~~aL~~a~~Ir~-------QL~~~l~~~~l~~~s~~~~d~~~~l~I~kal~aG~~~nvA~~~~~p~~iHPs 202 (294)
..|.++.+.+.+++++.+.+. +.....+++. ...+|+.+++++++.+... -...
T Consensus 499 ~gcl~e~l~IaA~Ls~~dp~~~p~~~~~~a~~~~~~f~-----~~~sD~l~~L~~~~~~~~~----~~~~---------- 559 (1283)
T TIGR01967 499 LGCLQEVLIIASALSIQDPRERPMEKQQAADQAHARFK-----DPRSDFLSRVNLWRHIEEQ----RQAL---------- 559 (1283)
T ss_pred cCCHHHHHHHHHHHcCCCcCCCcchhHHHHHHHHHHhc-----CCCCCHHHHHHHHHHHHHh----hhhc----------
Confidence 359999999999999876532 1222222221 1235778888888766321 0000
Q ss_pred ccCCCCCccccccccccccccccHHHHHHHHHHHHHHcCCCCCCCCCCCcchhhhHHHHHHhhhhhhHHHHH------hc
Q psy2072 203 VSLDQEDPQWCYDNFVNYRSLKSADNVRQQLSRIMDRFNLKRSSTEFTSKDYYINIRKSLVTGFFMQDYYIN------IR 276 (294)
Q Consensus 203 S~l~~~~~~WC~~~~ln~r~L~~a~~ir~QL~~~~~~~~~~~~s~~~~~~~~~~~i~k~l~~Gff~n~A~~~------~~ 276 (294)
..+..++||.+||||+++|+++.++++||.+++++++++..++ ..+++.|.+||++|||.|+|.+. ..
T Consensus 560 --~~~~~~~~C~~~fL~~~~l~~~~~i~~QL~~~~~~~~~~~~~~----~~~~~~i~~~l~~g~~~~iA~~~~~~~y~~~ 633 (1283)
T TIGR01967 560 --SANQFRNACRKQYLNYLRVREWQDIYRQLTQVVKELGLKLNEE----PADYDAIHKALLSGLLSQIGMKDEKHEYDGA 633 (1283)
T ss_pred --cchHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHcCCCcCCC----CccHHHHHHHHHHhhHHHHheeCCCCcEEec
Confidence 0123468999999999999999999999999999998876542 23456799999999999999532 12
Q ss_pred CCcEEEEecCCcccc
Q psy2072 277 KSLVTGFFMQCLLGI 291 (294)
Q Consensus 277 ~~~~v~ihPsS~l~~ 291 (294)
+|..+.|||+|+|..
T Consensus 634 ~g~~~~ihP~S~L~~ 648 (1283)
T TIGR01967 634 RGRKFHIFPGSPLFK 648 (1283)
T ss_pred CCcEEEECCCccccC
Confidence 478999999999864
No 20
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=98.94 E-value=8.8e-10 Score=113.55 Aligned_cols=56 Identities=20% Similarity=0.129 Sum_probs=54.8
Q ss_pred CCCCCHHHHHHHHHHhh---------hccHHHHHHHhCCCChHHHHHHHhhccCCCCccchHHHhh
Q psy2072 3 LHPIVIETLMSGDELRT---------DLVSLESQMATLGSDNIVCVLTTTSCFAPRVADNLDPIAA 59 (294)
Q Consensus 3 l~pP~~~~l~~a~~~L~---------~lT~lG~~~~~~p~~p~~~~~ll~~~~~~c~~~~~~~i~a 59 (294)
||||+.+++.+|++.|+ +||++|+.|+.||++|++||||+.|..++|.++ +++|||
T Consensus 375 l~~P~~~~i~~a~~~L~~lgald~~~~lT~~G~~~~~lp~~p~l~~~ll~~~~~~~~~~-~~~iaa 439 (819)
T TIGR01970 375 LDAPPSVALAAARQLLQRLGALDAQGRLTAHGKAMAALGCHPRLAAMLLSAHSTGLAAL-ACDLAA 439 (819)
T ss_pred CCCcCHHHHHHHHHHHHHCCCCCCCCCcCHHHHHHHhcCCCHHHHHHHHHhhhcCCHHH-HHHHHH
Confidence 79999999999999998 799999999999999999999999999999999 999999
No 21
>PF07717 OB_NTP_bind: Oligonucleotide/oligosaccharide-binding (OB)-fold; InterPro: IPR011709 This domain is found towards the C terminus of the DEAD-box helicases (IPR011545 from INTERPRO). In these helicases it appears to be always found in association with IPR007502 from INTERPRO. ; PDB: 3I4U_A 2XAU_B 3KX2_B.
Probab=98.81 E-value=1.8e-09 Score=85.14 Aligned_cols=60 Identities=23% Similarity=0.322 Sum_probs=41.5
Q ss_pred HHHHHHHHHcCCCCCCCCC---------CCcchhhhHHHHHHhhhhhhHH-------HHHhcCCcEEEEecCCccc
Q psy2072 231 QQLSRIMDRFNLKRSSTEF---------TSKDYYINIRKSLVTGFFMQDY-------YINIRKSLVTGFFMQCLLG 290 (294)
Q Consensus 231 ~QL~~~~~~~~~~~~s~~~---------~~~~~~~~i~k~l~~Gff~n~A-------~~~~~~~~~v~ihPsS~l~ 290 (294)
+||.+++++.|+...+... ....+.+.|++||++|||.|+| |+++.++..|+|||+|++.
T Consensus 1 ~QL~~il~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~aG~~~nvA~~~~~~~y~~~~~~~~v~iHPsS~l~ 76 (114)
T PF07717_consen 1 KQLLRILERIGFVPQSASSQSISQRPPNENRDQWELIRAALCAGFYPNVARRDNKGSYKTLSNGQPVFIHPSSVLF 76 (114)
T ss_dssp HHHHHHHHHTT----------TTST-----HTHCHHHHHHHHHHHCCCEEEE-TTSSEEETTTG-EEEE-TTSTTT
T ss_pred CHHHHHHHHcCCCCCccccccccccccccccccHHHHHHHHHHhhhhheEEeCCCCCEEEecCCCEEEEecCcccc
Confidence 6999999999886544211 1114568999999999999998 4566678899999999984
No 22
>PF07717 OB_NTP_bind: Oligonucleotide/oligosaccharide-binding (OB)-fold; InterPro: IPR011709 This domain is found towards the C terminus of the DEAD-box helicases (IPR011545 from INTERPRO). In these helicases it appears to be always found in association with IPR007502 from INTERPRO. ; PDB: 3I4U_A 2XAU_B 3KX2_B.
Probab=98.17 E-value=4.7e-07 Score=71.30 Aligned_cols=69 Identities=28% Similarity=0.500 Sum_probs=45.7
Q ss_pred HHHHHHHHHcCccCCCCCC---------CChhhHHHHHHHHHhchhhhHHHHhh----------cccccCCCccCCCCCc
Q psy2072 150 QQLSRIMDRFNLKRSSTEF---------TSKDYYINIRKSLVTGFFMQLIIVLA----------YPISSLPTVSLDQEDP 210 (294)
Q Consensus 150 ~QL~~~l~~~~l~~~s~~~---------~d~~~~l~I~kal~aG~~~nvA~~~~----------~p~~iHPsS~l~~~~~ 210 (294)
+||.+++++.++...+... .+..+...|++++++|||+|+|++.. .+++|||+|++++..+
T Consensus 1 ~QL~~il~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~aG~~~nvA~~~~~~~y~~~~~~~~v~iHPsS~l~~~~p 80 (114)
T PF07717_consen 1 KQLLRILERIGFVPQSASSQSISQRPPNENRDQWELIRAALCAGFYPNVARRDNKGSYKTLSNGQPVFIHPSSVLFKKPP 80 (114)
T ss_dssp HHHHHHHHHTT----------TTST-----HTHCHHHHHHHHHHHCCCEEEE-TTSSEEETTTG-EEEE-TTSTTTTTT-
T ss_pred CHHHHHHHHcCCCCCccccccccccccccccccHHHHHHHHHHhhhhheEEeCCCCCEEEecCCCEEEEecCcccccccc
Confidence 5899999999886544311 11146678999999999999998653 2478999999999999
Q ss_pred ccc-ccccc
Q psy2072 211 QWC-YDNFV 218 (294)
Q Consensus 211 ~WC-~~~~l 218 (294)
.|+ +...+
T Consensus 81 ~~vvy~e~~ 89 (114)
T PF07717_consen 81 KWVVYHELV 89 (114)
T ss_dssp SEEEEEEEE
T ss_pred ccchhhhhe
Confidence 997 54444
No 23
>KOG0920|consensus
Probab=97.56 E-value=5.7e-05 Score=78.09 Aligned_cols=83 Identities=14% Similarity=0.236 Sum_probs=63.8
Q ss_pred CCccccccccccccccccHHHHHHHHHHHHHHcCCCCCC-------CC-CCCcchhhhHHHHHHhhhhhhHHHHH-----
Q psy2072 208 EDPQWCYDNFVNYRSLKSADNVRQQLSRIMDRFNLKRSS-------TE-FTSKDYYINIRKSLVTGFFMQDYYIN----- 274 (294)
Q Consensus 208 ~~~~WC~~~~ln~r~L~~a~~ir~QL~~~~~~~~~~~~s-------~~-~~~~~~~~~i~k~l~~Gff~n~A~~~----- 274 (294)
...+||.+|||++.+|+...+.|.|+...+.+.|+-..+ .+ .....+.+.++.+||+|++.|+|+.-
T Consensus 703 ~~~~fc~~~fLs~~~l~~i~~l~~q~~~~l~~~g~~~~~~~~~~~~~~~n~~s~~~~~iravl~a~lyP~i~~~~~~~~~ 782 (924)
T KOG0920|consen 703 AEKDFCEENFLSSNTLQEISSLRVQFLELLSDIGLIPISSTAALTDSECNHNSQNPELVRAVLCAGLYPNIAFVRRMEPK 782 (924)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhcccccCCcccccCchhhhhcCCCHHHHHHHHhccCCCceeeeecccCC
Confidence 356899999999999999999999999999998864322 11 11223567899999999999998532
Q ss_pred -----hcCC--cEEEEecCCccc
Q psy2072 275 -----IRKS--LVTGFFMQCLLG 290 (294)
Q Consensus 275 -----~~~~--~~v~ihPsS~l~ 290 (294)
..++ ..|++||+|+..
T Consensus 783 ~~~~~~~~~~~~~v~i~~~sv~~ 805 (924)
T KOG0920|consen 783 SKSVTFVTKADGRVIIHPSSVNE 805 (924)
T ss_pred cCcceeecCCceeEEEecchhhc
Confidence 1233 399999999864
No 24
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=97.52 E-value=7.8e-05 Score=76.99 Aligned_cols=80 Identities=13% Similarity=0.100 Sum_probs=64.9
Q ss_pred CccccccccccccccccHHHHHHHHHHHHHH-cCCCCCCCCCCC--------------cchhhhHHHHHHhhhhhhHH--
Q psy2072 209 DPQWCYDNFVNYRSLKSADNVRQQLSRIMDR-FNLKRSSTEFTS--------------KDYYINIRKSLVTGFFMQDY-- 271 (294)
Q Consensus 209 ~~~WC~~~~ln~r~L~~a~~ir~QL~~~~~~-~~~~~~s~~~~~--------------~~~~~~i~k~l~~Gff~n~A-- 271 (294)
...||..+++++++|.++..++.|+.....+ ++..+...+.+. +..++.+++|+++|+++|++
T Consensus 555 ~~~~~~~~~~~~~~L~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~a~~~~~~~~~ 634 (845)
T COG1643 555 RANGCRAMLFPTKALSRAPWIIAALLVQTSALAGRILAAAEIDEDEWAAQHLPEHCYSEPIWDDIRGALAAGRKLNIAQL 634 (845)
T ss_pred HhcChhhhcCChhHHHhhHHHHHHHHHhhhccccchhhhcccCcchhhhhhhhhhhccchhHHHHhhhhhhheecceeee
Confidence 5689999999999999999999999999888 665543322211 11467899999999999996
Q ss_pred ------HHHhcCCcEEEEecCCc
Q psy2072 272 ------YINIRKSLVTGFFMQCL 288 (294)
Q Consensus 272 ------~~~~~~~~~v~ihPsS~ 288 (294)
|+++.++..|.+||+|+
T Consensus 635 ~~~~~~~~~~~~~~~v~~~~~~v 657 (845)
T COG1643 635 QLDGRPYVTLSDNTPVFAHPSSV 657 (845)
T ss_pred eccccccccCCCCceeEecchhH
Confidence 57878899999999995
No 25
>KOG3843|consensus
Probab=97.32 E-value=3.9e-05 Score=68.46 Aligned_cols=83 Identities=52% Similarity=0.938 Sum_probs=71.5
Q ss_pred CCCCCCHHHHHHHHHHhhhccHHHHHHHhCCCChHHHHHHHhhccCCCCccchHHHhhcccccCCCccccchhhhhhHhh
Q psy2072 2 SLHPIVIETLMSGDELRTDLVSLESQMATLGSDNIVCVLTTTSCFAPRVADNLDPIAALCQRYNIPHVINNAYGLQSTRL 81 (294)
Q Consensus 2 ~l~pP~~~~l~~a~~~L~~lT~lG~~~~~~p~~p~~~~~ll~~~~~~c~~~~~~~i~a~~~~~~~~~~~~~~~~~~~~~~ 81 (294)
|.+|--.|.+....+...++-...+.+.+++-|..++.+-..||..+-+.+|+-.|+|+|..+|+||++||+||+|+..+
T Consensus 124 gfepiiie~i~d~d~l~tdleav~~~iee~g~dcilci~sttscfapr~pd~leaiaaica~~diphivnnayglqsee~ 203 (432)
T KOG3843|consen 124 GFEPIIIENILDGDELITDLEAVEAIIEELGEDCILCIHSTTSCFAPRSPDNLEAIAAICAAHDIPHIVNNAYGLQSEEC 203 (432)
T ss_pred CCCceeeeccccchHHHHhHHHHHHHHHHhCCceEEEEeecccccCCCCCchHHHHHHHHHccCchhhhccccccchHHH
Confidence 45666777777777776677777888999999999999999999999888889999999999999999999999999988
Q ss_pred hhc
Q psy2072 82 MKL 84 (294)
Q Consensus 82 ls~ 84 (294)
+..
T Consensus 204 i~~ 206 (432)
T KOG3843|consen 204 IHK 206 (432)
T ss_pred HHH
Confidence 764
No 26
>KOG0926|consensus
Probab=96.86 E-value=0.0015 Score=66.27 Aligned_cols=80 Identities=13% Similarity=0.154 Sum_probs=59.7
Q ss_pred CccccccccccccccccHHHHHHHHHHHHHHcCCC-------CCCCCCCCcchhhhHHHHHHhhhhhhHHHHH-------
Q psy2072 209 DPQWCYDNFVNYRSLKSADNVRQQLSRIMDRFNLK-------RSSTEFTSKDYYINIRKSLVTGFFMQDYYIN------- 274 (294)
Q Consensus 209 ~~~WC~~~~ln~r~L~~a~~ir~QL~~~~~~~~~~-------~~s~~~~~~~~~~~i~k~l~~Gff~n~A~~~------- 274 (294)
...||..|+|..++|..+++.|+||..++.+..+. ...... .+.....+|..||+||.-++|++.
T Consensus 888 ~~rfc~~ngLr~Kam~Ev~KLR~QL~~lv~~~~i~~v~~~~d~~l~pp-t~~q~~lLrQ~i~Ag~~DrVArk~~~~~y~~ 966 (1172)
T KOG0926|consen 888 GMRFCEANGLRLKAMEEVRKLRKQLTNLVNHGNIQDVEKSWDLTLKPP-TDTQAKLLRQMICAGFADRVARKVDATEYDA 966 (1172)
T ss_pred cchhHHhcchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcccCCCCC-chHHHHHHHHHHHHHHHHHHHHhccccccch
Confidence 44599999999999999999999999999754332 111110 112234678999999999999754
Q ss_pred hcCCcEEEEecCCcc
Q psy2072 275 IRKSLVTGFFMQCLL 289 (294)
Q Consensus 275 ~~~~~~v~ihPsS~l 289 (294)
..-+..|++||+|+|
T Consensus 967 ~~i~~~~fl~~~svl 981 (1172)
T KOG0926|consen 967 AKIQEPVFLHRWSVL 981 (1172)
T ss_pred hhhcCceeeeehhhh
Confidence 223679999999987
No 27
>PF05889 SLA_LP_auto_ag: Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen); InterPro: IPR008829 This family consists of several eukaryotic and archaeal proteins which are related to the Homo sapiens soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen). Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis []. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway []. The archaeal sequences Q8TXK0 from SWISSPROT and Q8TYR3 from SWISSPROT are annotated as being pyridoxal phosphate-dependent enzymes.; GO: 0016740 transferase activity; PDB: 2E7J_B 2E7I_B 2Z67_C 3HL2_D 3BC8_A 3BCA_A 3BCB_A.
Probab=96.86 E-value=0.00013 Score=68.81 Aligned_cols=61 Identities=57% Similarity=1.149 Sum_probs=45.1
Q ss_pred HHHHHHhCCCChHHHHHHHhhccCCCCccchHHHhhcccccCCCccccchhhhhhHhhhhc
Q psy2072 24 LESQMATLGSDNIVCVLTTTSCFAPRVADNLDPIAALCQRYNIPHVINNAYGLQSTRLMKL 84 (294)
Q Consensus 24 lG~~~~~~p~~p~~~~~ll~~~~~~c~~~~~~~i~a~~~~~~~~~~~~~~~~~~~~~~ls~ 84 (294)
.-+.+-++.-+|.++.+-..++.++-..+++..|+-||..||||||||||||+|+++++..
T Consensus 144 ie~~i~~~G~~~iLcvltttscfapr~~D~i~~IakiC~~~~IPhlvNnAYgvQ~~~~~~~ 204 (389)
T PF05889_consen 144 IEAKIEELGADNILCVLTTTSCFAPRLPDDIEEIAKICKEYDIPHLVNNAYGVQSSKCMHL 204 (389)
T ss_dssp HHHHHHHHCGGGEEEEEEESSTTTTB----HHHHHHHHHHHT--EEEEGTTTTT-HHHHHH
T ss_pred HHHHHHHhCCCCeEEEEEecCccCCCCCccHHHHHHHHHHcCCceEEccchhhhHHHHHHH
Confidence 4456666777777777777788888655559999999999999999999999999998774
No 28
>PHA02653 RNA helicase NPH-II; Provisional
Probab=92.43 E-value=0.097 Score=53.58 Aligned_cols=41 Identities=10% Similarity=0.084 Sum_probs=37.7
Q ss_pred CCCCCCHHHHHHHHHHhh-------hccHH--HHHHHhCCCChHHHHHHHhhcc
Q psy2072 2 SLHPIVIETLMSGDELRT-------DLVSL--ESQMATLGSDNIVCVLTTTSCF 46 (294)
Q Consensus 2 ~l~pP~~~~l~~a~~~L~-------~lT~l--G~~~~~~p~~p~~~~~ll~~~~ 46 (294)
.||||+.+++.+|++.|. +||++ |+.|+.+ ++||+++.|..
T Consensus 546 ~ldpP~~~~l~~A~~~L~~lga~~~~l~~l~~~~~~~~~----~~~k~~~~g~~ 595 (675)
T PHA02653 546 FVIPSNLDRLRKTEEYIDSFNISIEKWYEILSNYYVNML----EYAKIYVKGGI 595 (675)
T ss_pred cCCCCCHHHHHHHHHHHHHcCCCchhhhhhhccccHHHH----HHhHHHhcccH
Confidence 489999999999999998 89999 9999999 99999988753
No 29
>PRK01172 ski2-like helicase; Provisional
Probab=89.22 E-value=5.5 Score=40.83 Aligned_cols=42 Identities=10% Similarity=-0.086 Sum_probs=36.0
Q ss_pred HHHHHHHHHHhh-----------hccHHHHHHHhCCCChHHHHHHHhhccCCC
Q psy2072 8 IETLMSGDELRT-----------DLVSLESQMATLGSDNIVCVLTTTSCFAPR 49 (294)
Q Consensus 8 ~~~l~~a~~~L~-----------~lT~lG~~~~~~p~~p~~~~~ll~~~~~~c 49 (294)
.+.++.|++.|. ..|++|+.++.+|++|..++.+..+....-
T Consensus 443 ~~~v~~~l~~L~~~~~i~~~~~~~~t~lG~~~s~~~l~~~t~~~~~~~l~~~~ 495 (674)
T PRK01172 443 DYYIESSLKFLKENGFIKGDVTLRATRLGKLTSDLYIDPESALILKSAFDHDY 495 (674)
T ss_pred HHHHHHHHHHHHHCCCcccCCcEeECHHHHHHHHhCCCHHHHHHHHHHhhccC
Confidence 467888999997 469999999999999999999998876543
No 30
>PRK02362 ski2-like helicase; Provisional
Probab=76.39 E-value=31 Score=35.86 Aligned_cols=39 Identities=10% Similarity=-0.013 Sum_probs=33.0
Q ss_pred HHHHHHHHHhh------------hccHHHHHHHhCCCChHHHHHHHhhccC
Q psy2072 9 ETLMSGDELRT------------DLVSLESQMATLGSDNIVCVLTTTSCFA 47 (294)
Q Consensus 9 ~~l~~a~~~L~------------~lT~lG~~~~~~p~~p~~~~~ll~~~~~ 47 (294)
+.+..+++.|. ..|++|+.++.++++|.-+..+..+...
T Consensus 465 ~~v~~~l~~L~~~~~i~~~~~~~~~t~lG~~~s~~~l~~~t~~~~~~~l~~ 515 (737)
T PRK02362 465 RVVDDVLDFLERNGMIEEDGETLEATELGHLVSRLYIDPLSAAEIIDGLEA 515 (737)
T ss_pred HHHHHHHHHHHHCCCeeecCCeEeEChHHHHHHHhcCCHHHHHHHHHHhhh
Confidence 45778888886 4799999999999999999999887653
No 31
>PRK05255 hypothetical protein; Provisional
Probab=33.34 E-value=62 Score=27.39 Aligned_cols=44 Identities=18% Similarity=0.086 Sum_probs=34.3
Q ss_pred CCCCCHHHHHHHHHHhh----hccHHH-HHHHhCCCChHHHHHHHhhcc
Q psy2072 3 LHPIVIETLMSGDELRT----DLVSLE-SQMATLGSDNIVCVLTTTSCF 46 (294)
Q Consensus 3 l~pP~~~~l~~a~~~L~----~lT~lG-~~~~~~p~~p~~~~~ll~~~~ 46 (294)
+++|+...+.+....|. .|+.++ .++..+|++..+-..|+.+-.
T Consensus 14 ~~~~SKSq~KRe~~alq~LG~~L~~Ls~~ql~~lpL~e~L~~Ai~ea~r 62 (171)
T PRK05255 14 IIWVSKSQIKRDAEALQDLGEELVELSKDQLAKLPLDEDLRDAILEAQR 62 (171)
T ss_pred ccCCChHHHHHHHHHHHHHHHHHHhCCHHHHhcCCCCHHHHHHHHHHhh
Confidence 45789999988877776 677765 488899999998887776644
No 32
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=30.13 E-value=45 Score=35.25 Aligned_cols=36 Identities=11% Similarity=-0.120 Sum_probs=30.2
Q ss_pred hhHHHHHHhhhhhhHHHH-------HhcCCcEEEEecCCcccc
Q psy2072 256 INIRKSLVTGFFMQDYYI-------NIRKSLVTGFFMQCLLGI 291 (294)
Q Consensus 256 ~~i~k~l~~Gff~n~A~~-------~~~~~~~v~ihPsS~l~~ 291 (294)
+.+.+||+.||+-++|++ .+.+|..+.+||+|.|..
T Consensus 489 ~~~~~~la~aypdriA~~r~~~~~~~l~~G~~a~l~~~~~l~~ 531 (812)
T PRK11664 489 SLIAPLLALAFPDRIARRRGQDGRYQLANGMGAMLDADDALSR 531 (812)
T ss_pred HHHHHHHHHHCHHHHhhhcCCCCeEEeeCCCeEEECCCCcccC
Confidence 358899999999999964 455799999999998864
No 33
>PF03288 Pox_D5: Poxvirus D5 protein-like; InterPro: IPR004968 This domain is found at the C terminus of phage P4 alpha protein and related proteins. Phage P4 DNA replication depends on the product of the alpha gene, which has origin recognition ability, DNA helicase activity, and DNA primase activity. The structure of the protein can be summarised as follows: The N terminus provides the primase activity, the central region is the helicase/nucleoside triphosphatase domain and the ori DNA recognition resides in the C-terminal 1/3 of the protein []. The domain is also found at the C terminus of a number of proteins from orthopox viruses including vaccinia virus D5. D5 encodes a 90kDa protein that is transiently expressed at early times after infection. It has an nucleoside triphosphatase activity which is independent of common nucleic acid cofactors and it can hydrolyse all the common ribo- and deoxyribonucleoside triphosphates to diphosphates in the presence of a divalent cation [].; PDB: 1KA8_E.
Probab=26.74 E-value=1.2e+02 Score=21.80 Aligned_cols=42 Identities=21% Similarity=0.448 Sum_probs=23.5
Q ss_pred CCCHhHHHHHHHHHHhcCCChhhHHhhccCHHHHHhHHHHHHHHHHHHHH
Q psy2072 109 DGDHLTLLNVYHAFKQNQEDPQWCYDNFVNYRSLKSADNVRQQLSRIMDR 158 (294)
Q Consensus 109 ~gDhlt~l~~~~~~~~~~~~~~~C~~~~L~~~aL~~a~~Ir~QL~~~l~~ 158 (294)
.++.+..-.+|.+| ..||.+++... .++-....++|......
T Consensus 18 ~~~~v~~~~lY~~Y------~~wc~~ng~~~--~ls~~~F~~~L~~~~~~ 59 (86)
T PF03288_consen 18 PGDFVPSKDLYDAY------KEWCEENGYKP--PLSKRKFGKELKQYFPE 59 (86)
T ss_dssp --S--TTTBHHHHH------HHHHHHTT-S------HHHHHHHHHHHHHH
T ss_pred CcccccHHHHHHHH------HHHHHHhCCCc--ccCHHHHHHHHHHHhhh
Confidence 46666666778888 47999999887 44455566666666544
No 34
>PF00126 HTH_1: Bacterial regulatory helix-turn-helix protein, lysR family; InterPro: IPR000847 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. One such family, the lysR family, groups together a range of proteins, including ampR, catM, catR, cynR, cysB, gltC, iciA, ilvY, irgB, lysR, metR, mkaC, mleR, nahR, nhaR, nodD, nolR, oxyR, pssR, rbcR, syrM, tcbR, tfdS and trpI [, , , , ]. The majority of these proteins appear to be transcription activators and most are known to negatively regulate their own expression. All possess a potential HTH DNA-binding motif towards their N-termini.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3T1B_D 3SZP_A 1O7L_C 1B9N_A 1B9M_A 3FZJ_J 3FXR_B 3FXQ_A 3FXU_A 2IJL_B ....
Probab=25.82 E-value=38 Score=22.85 Aligned_cols=26 Identities=8% Similarity=0.067 Sum_probs=13.6
Q ss_pred CCCCCCCHHHHHHHHHHhh------------hccHHHH
Q psy2072 1 MSLHPIVIETLMSGDELRT------------DLVSLES 26 (294)
Q Consensus 1 ~~l~pP~~~~l~~a~~~L~------------~lT~lG~ 26 (294)
|++++|....-.+.+|.-. .+|+.|+
T Consensus 23 l~is~~~vs~~i~~LE~~lg~~Lf~r~~~~~~lT~~G~ 60 (60)
T PF00126_consen 23 LGISQSAVSRQIKQLEEELGVPLFERSGRGLRLTEAGE 60 (60)
T ss_dssp CTSSHHHHHHHHHHHHHHHTS-SEEECSSSEEE-HHHH
T ss_pred hhccchHHHHHHHHHHHHhCCeEEEECCCCeeEChhhC
Confidence 4566665554444444332 6777775
No 35
>COG3028 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.78 E-value=1.2e+02 Score=25.75 Aligned_cols=42 Identities=14% Similarity=0.071 Sum_probs=32.5
Q ss_pred CCCCHHHHHHHHHHhh----hccHHHH-HHHhCCCChHHHHHHHhhc
Q psy2072 4 HPIVIETLMSGDELRT----DLVSLES-QMATLGSDNIVCVLTTTSC 45 (294)
Q Consensus 4 ~pP~~~~l~~a~~~L~----~lT~lG~-~~~~~p~~p~~~~~ll~~~ 45 (294)
.+++.+.+.+-.+.|. +||.+++ .++++|++-.+...|..+-
T Consensus 25 iwvSKSqiKRd~~aLq~LGe~L~~L~~~~L~KiPL~E~L~~Ai~~aq 71 (187)
T COG3028 25 IWVSKSQIKRDAEALQDLGEELVDLTKAALAKIPLDEDLLEAIELAQ 71 (187)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhcCHHHHhhCCCChHHHHHHHHHH
Confidence 3677888877665555 7888776 8999999999998887664
No 36
>PRK00254 ski2-like helicase; Provisional
Probab=24.33 E-value=8.1e+02 Score=25.37 Aligned_cols=27 Identities=11% Similarity=-0.054 Sum_probs=23.8
Q ss_pred hccHHHHHHHhCCCChHHHHHHHhhcc
Q psy2072 20 DLVSLESQMATLGSDNIVCVLTTTSCF 46 (294)
Q Consensus 20 ~lT~lG~~~~~~p~~p~~~~~ll~~~~ 46 (294)
..|++|+.++.++++|.-++++..+..
T Consensus 479 ~~t~lG~~~s~~~i~~~t~~~~~~~l~ 505 (720)
T PRK00254 479 IPLPLGIRTSQLYIDPLTAKKFKDAFP 505 (720)
T ss_pred eeChHHHHHHHHhCCHHHHHHHHHHHH
Confidence 459999999999999999999887654
No 37
>PF09821 AAA_assoc_C: C-terminal AAA-associated domain; InterPro: IPR018632 Members of this family are found in various prokaryotic ABC transporters, predominantly involved in nitrate, sulphonate and bicarbonate translocation.
Probab=23.34 E-value=55 Score=25.92 Aligned_cols=47 Identities=17% Similarity=0.092 Sum_probs=29.9
Q ss_pred HHHHHHHHhh---------hccHHHHHHHhCCCChHHHHHHHhhccCCCCccchHHHhh
Q psy2072 10 TLMSGDELRT---------DLVSLESQMATLGSDNIVCVLTTTSCFAPRVADNLDPIAA 59 (294)
Q Consensus 10 ~l~~a~~~L~---------~lT~lG~~~~~~p~~p~~~~~ll~~~~~~c~~~~~~~i~a 59 (294)
-+.+|.+.|. .||++|+..++-++.-+ |-|+......-... +..|..
T Consensus 16 p~~eAaelLgf~~~~~Gdi~LT~~G~~f~~a~~~~r--K~if~~~l~~~~Pl-~~~I~~ 71 (120)
T PF09821_consen 16 PIVEAAELLGFAEVEEGDIRLTPLGRRFAEADIDER--KEIFREQLLRHVPL-AAHIRR 71 (120)
T ss_pred HHHHHHHHcCCeeecCCcEEeccchHHHHHCChHHH--HHHHHHHHHhcCCH-HHHHHH
Confidence 3667788886 89999999999987443 44444433333344 343444
Done!