Query psy2072
Match_columns 294
No_of_seqs 225 out of 2047
Neff 7.8
Searched_HMMs 29240
Date Fri Aug 16 23:36:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2072.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2072hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3i4u_A ATP-dependent RNA helic 100.0 7.3E-41 2.5E-45 301.5 14.5 191 2-218 11-221 (270)
2 2xau_A PRE-mRNA-splicing facto 100.0 2.6E-31 9E-36 270.6 13.2 188 3-213 483-694 (773)
3 3i4u_A ATP-dependent RNA helic 99.7 7.1E-19 2.4E-23 158.1 4.5 130 131-291 66-209 (270)
4 2xau_A PRE-mRNA-splicing facto 99.4 3.8E-14 1.3E-18 144.4 2.3 138 129-290 535-688 (773)
5 2va8_A SSO2462, SKI2-type heli 98.0 1.3E-05 4.5E-10 80.5 9.4 132 5-158 467-627 (715)
6 2p6r_A Afuhel308 helicase; pro 98.0 5.8E-05 2E-09 75.7 13.8 121 5-148 449-596 (702)
7 2zj8_A DNA helicase, putative 97.7 0.00011 3.6E-09 74.0 9.8 120 5-146 450-604 (720)
8 4f92_B U5 small nuclear ribonu 52.9 31 0.001 38.1 8.0 50 10-59 555-618 (1724)
9 4f92_B U5 small nuclear ribonu 52.8 32 0.0011 38.0 8.1 50 10-59 1387-1449(1724)
10 1oeg_A Apolipoprotein E; siali 51.9 4.5 0.00016 22.3 0.7 18 226-243 3-20 (26)
11 4fla_A Regulation of nuclear P 40.3 21 0.00072 28.4 3.3 33 2-34 18-54 (152)
12 1oef_A Apolipoprotein E; glyco 35.3 27 0.00094 18.8 2.3 15 226-240 7-21 (26)
13 3hl2_A O-phosphoseryl-tRNA(SEC 30.1 8.1 0.00028 36.9 -0.9 30 49-79 231-260 (501)
14 3im1_A Protein SNU246, PRE-mRN 21.9 2.8E+02 0.0095 24.2 7.8 40 20-59 10-49 (328)
No 1
>3i4u_A ATP-dependent RNA helicase DHX8; splicing, ATP-binding, hydrolase, mRNA processing, splicing, nucleotide-binding, nucleus, phosphoprotein, SPLI; 2.10A {Homo sapiens}
Probab=100.00 E-value=7.3e-41 Score=301.53 Aligned_cols=191 Identities=29% Similarity=0.510 Sum_probs=172.9
Q ss_pred CCCCCCHHHHHHHHHHhh---------hccHHHHHHHhCCCChHHHHHHHhhccCCCCccchHHHhhcccccCCCccccc
Q psy2072 2 SLHPIVIETLMSGDELRT---------DLVSLESQMATLGSDNIVCVLTTTSCFAPRVADNLDPIAALCQRYNIPHVINN 72 (294)
Q Consensus 2 ~l~pP~~~~l~~a~~~L~---------~lT~lG~~~~~~p~~p~~~~~ll~~~~~~c~~~~~~~i~a~~~~~~~~~~~~~ 72 (294)
+||||+.+++.+|++.|+ +||++|+.|++||++|++||||+.|..++|.++ +++|||
T Consensus 11 ~ldpP~~~~l~~A~~~L~~LgAld~~g~lT~lG~~ma~lPl~P~lakmLl~a~~~~c~~~-~l~iaA------------- 76 (270)
T 3i4u_A 11 GTRGSPMETLITAMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEE-MLTIVS------------- 76 (270)
T ss_dssp ---CCHHHHHHHHHHHHHHHTSBCTTSCBCHHHHHHTTSCSCHHHHHHHHHHHHTTCHHH-HHHHHH-------------
T ss_pred CCCCcCHHHHHHHHHHHHHcCCcCCCCCccHHHHHHHhCCCCHHHHHHHHHhhhcCCHHH-HHHHHH-------------
Confidence 589999999999999998 799999999999999999999999999999999 999999
Q ss_pred hhhhhhHhhhhccccccCChhHHHHHHHHhhhhccCCCCHhHHHHHHHHHHhcCCChhhHHhhccCHHHHHhHHHHHHHH
Q psy2072 73 AYGLQSTRLMKLIQEAARPNEAKKAADDAKMRFAHIDGDHLTLLNVYHAFKQNQEDPQWCYDNFVNYRSLKSADNVRQQL 152 (294)
Q Consensus 73 ~~~~~~~~~ls~~~~f~~~~~~~~~~~~~~~~f~~~~gDhlt~l~~~~~~~~~~~~~~~C~~~~L~~~aL~~a~~Ir~QL 152 (294)
+||++++|++|.++++++++++.+|.+++|||+|++|+|++|++++.+++||.+++|+.++|+++.++++||
T Consensus 77 --------~Ls~~~~f~~p~~~~~~a~~~~~~f~~~~sD~ltlLn~~~~~~~~~~~~~wC~~~fL~~~~l~~~~~ir~QL 148 (270)
T 3i4u_A 77 --------MLSVQNVFYRPKDKQALADQKKAKFHQTEGDHLTLLAVYNSWKNNKFSNPWCYENFIQARSLRRAQDIRKQM 148 (270)
T ss_dssp --------HHTSSCCBCCCGGGHHHHHHHHHTTCBTTBHHHHHHHHHHHHHHTTTCHHHHHHTTBCHHHHHHHHHHHHHH
T ss_pred --------HHCCCccccCCchhHHHHHHHHHHccCCCChHHHHHHHHHHHHHcCchhhHHHHhcCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998888999999999999999999999999
Q ss_pred HHHHHHcCccCCCCCCCChhhHHHHHHHHHhchhhhHHHHhh----------cccccCCCccCCCCCcccc-ccccc
Q psy2072 153 SRIMDRFNLKRSSTEFTSKDYYINIRKSLVTGFFMQLIIVLA----------YPISSLPTVSLDQEDPQWC-YDNFV 218 (294)
Q Consensus 153 ~~~l~~~~l~~~s~~~~d~~~~l~I~kal~aG~~~nvA~~~~----------~p~~iHPsS~l~~~~~~WC-~~~~l 218 (294)
.+++++.+++..++. .+...|++++++|||+|+|++.. .+++|||+|++++..++|+ +.+.+
T Consensus 149 ~~~l~~~~~~~~s~~----~~~~~i~~~L~aG~~~nvA~~~~~~~Y~~~~~~~~v~iHPsS~L~~~~p~wvvy~Elv 221 (270)
T 3i4u_A 149 LGIMDRHKLDVVSCG----KSTVRVQKAICSGFFRNAAKKDPQEGYRTLIDQQVVYIHPSSALFNRQPEWVVYHELV 221 (270)
T ss_dssp HHHHHHTTCCCCCCT----TCTHHHHHHHHHHHGGGEEEECSSSSEEETTTCCEEEECTTSTTTTSCCSEEEEEEEE
T ss_pred HHHHHHcCCCcCCCc----chHHHHHHHHHHHhHHHHheeCCCCceEEccCCCEEEECchhhhcCCCCCEEEEEehh
Confidence 999999988755433 34568999999999999998752 2468999999999889997 44444
No 2
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.97 E-value=2.6e-31 Score=270.62 Aligned_cols=188 Identities=40% Similarity=0.663 Sum_probs=168.9
Q ss_pred CCCCCHHHHHHHHHHhh---------hccHHHHHHHhCCCChHHHHHHHhhccCCCCccchHHHhhcccccCCCccccch
Q psy2072 3 LHPIVIETLMSGDELRT---------DLVSLESQMATLGSDNIVCVLTTTSCFAPRVADNLDPIAALCQRYNIPHVINNA 73 (294)
Q Consensus 3 l~pP~~~~l~~a~~~L~---------~lT~lG~~~~~~p~~p~~~~~ll~~~~~~c~~~~~~~i~a~~~~~~~~~~~~~~ 73 (294)
+|||+.+.+.+|++.|. +||++|+.|+.||++|++||||+.|..++|.++ +++|+|
T Consensus 483 ~~~p~~~~i~~a~~~L~~lgald~~~~lT~lG~~~a~~pl~p~~~~~l~~~~~~~c~~~-~l~i~a-------------- 547 (773)
T 2xau_A 483 MDPPAPETMMRALEELNYLACLDDEGNLTPLGRLASQFPLDPMLAVMLIGSFEFQCSQE-ILTIVA-------------- 547 (773)
T ss_dssp SSCCCHHHHHHHHHHHHHTTSBCTTSCBCHHHHHHTTSSSCHHHHHHHHHGGGGTCHHH-HHHHHH--------------
T ss_pred cCCCcHHHHHHHHHHHHHcCCcccCCCcChhhhhhccccCCHHHHHHHHhhcccCchhH-HHHHHH--------------
Confidence 68999999999999998 799999999999999999999999999999999 999999
Q ss_pred hhhhhHhhhhccccccCChhHHHHHHHHhhhhccCCCCHhHHHHHHHHHHhcC---CC-hhhHHhhccCHHHHHhHHHHH
Q psy2072 74 YGLQSTRLMKLIQEAARPNEAKKAADDAKMRFAHIDGDHLTLLNVYHAFKQNQ---ED-PQWCYDNFVNYRSLKSADNVR 149 (294)
Q Consensus 74 ~~~~~~~~ls~~~~f~~~~~~~~~~~~~~~~f~~~~gDhlt~l~~~~~~~~~~---~~-~~~C~~~~L~~~aL~~a~~Ir 149 (294)
||+++++|++|.+.+++++.+++.|.+++|||+|++|+|++|.++. .. .+||.+++|++++|.++.+++
T Consensus 548 -------~ls~~~~f~~~~~~~~~~~~~~~~f~~~~~D~~~~l~~~~~~~~~~~~~~~~~~~c~~~~l~~~~l~~~~~~~ 620 (773)
T 2xau_A 548 -------MLSVPNVFIRPTKDKKRADDAKNIFAHPDGDHITLLNVYHAFKSDEAYEYGIHKWCRDHYLNYRSLSAADNIR 620 (773)
T ss_dssp -------HHTSCCCBCCCTTCHHHHHHHHHTTCCTTBHHHHHHHHHHHHTSHHHHHHCHHHHHHHTTBCHHHHHHHHHHH
T ss_pred -------hcccCCcccCChHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHhccccchHHHHHHHhCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999997654 45 789999999999999999999
Q ss_pred HHHHHHHHHcCccCCCCCCCChhhHHHHHHHHHhchhhhHHHHhh----c-------ccccCCCccCCCCCcccc
Q psy2072 150 QQLSRIMDRFNLKRSSTEFTSKDYYINIRKSLVTGFFMQLIIVLA----Y-------PISSLPTVSLDQEDPQWC 213 (294)
Q Consensus 150 ~QL~~~l~~~~l~~~s~~~~d~~~~l~I~kal~aG~~~nvA~~~~----~-------p~~iHPsS~l~~~~~~WC 213 (294)
.||.+++++.+++..+........+..|++++++|||+|+|++.. | .++|||+|++. ..++|+
T Consensus 621 ~ql~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~g~~~~~a~~~~~~~~y~~~~~~~~~~ihp~s~l~-~~~~~~ 694 (773)
T 2xau_A 621 SQLERLMNRYNLELNTTDYESPKYFDNIRKALASGFFMQVAKKRSGAKGYITVKDNQDVLIHPSTVLG-HDAEWV 694 (773)
T ss_dssp HHHHHHHHHTTCCCCCCCTTSTTHHHHHHHHHHHHHTTSEEEECCC--CEEETTTCCEEEECTTCCCC-TTCSEE
T ss_pred HHHHHHHHhcCCCcCCCCCCchhhHHHHHHHHHHhChHhheeeccCCCcceEeeCCCEEEECCCcccC-CCCCEE
Confidence 999999999988776554333455678999999999999997652 2 35799999994 347786
No 3
>3i4u_A ATP-dependent RNA helicase DHX8; splicing, ATP-binding, hydrolase, mRNA processing, splicing, nucleotide-binding, nucleus, phosphoprotein, SPLI; 2.10A {Homo sapiens}
Probab=99.74 E-value=7.1e-19 Score=158.07 Aligned_cols=130 Identities=24% Similarity=0.385 Sum_probs=103.0
Q ss_pred hHHhhccCHHHHHhHHHHH-------HHHHHHHHHcCccCCCCCCCChhhHHHHHHHHHhchhhhHHHHhhcccccCCCc
Q psy2072 131 WCYDNFVNYRSLKSADNVR-------QQLSRIMDRFNLKRSSTEFTSKDYYINIRKSLVTGFFMQLIIVLAYPISSLPTV 203 (294)
Q Consensus 131 ~C~~~~L~~~aL~~a~~Ir-------~QL~~~l~~~~l~~~s~~~~d~~~~l~I~kal~aG~~~nvA~~~~~p~~iHPsS 203 (294)
.|.++.+.+.+|+++.+++ ++.....+++. ...+|+.++++++++|..
T Consensus 66 ~c~~~~l~iaA~Ls~~~~f~~p~~~~~~a~~~~~~f~-----~~~sD~ltlLn~~~~~~~-------------------- 120 (270)
T 3i4u_A 66 GCSEEMLTIVSMLSVQNVFYRPKDKQALADQKKAKFH-----QTEGDHLTLLAVYNSWKN-------------------- 120 (270)
T ss_dssp TCHHHHHHHHHHHTSSCCBCCCGGGHHHHHHHHHTTC-----BTTBHHHHHHHHHHHHHH--------------------
T ss_pred CCHHHHHHHHHHHCCCccccCCchhHHHHHHHHHHcc-----CCCChHHHHHHHHHHHHH--------------------
Confidence 4888999999999886652 22222223331 123688899999988753
Q ss_pred cCCCCCccccccccccccccccHHHHHHHHHHHHHHcCCCCCCCCCCCcchhhhHHHHHHhhhhhhHH-------HHHhc
Q psy2072 204 SLDQEDPQWCYDNFVNYRSLKSADNVRQQLSRIMDRFNLKRSSTEFTSKDYYINIRKSLVTGFFMQDY-------YINIR 276 (294)
Q Consensus 204 ~l~~~~~~WC~~~~ln~r~L~~a~~ir~QL~~~~~~~~~~~~s~~~~~~~~~~~i~k~l~~Gff~n~A-------~~~~~ 276 (294)
.+.+.+||.+|||++++|+++.+||+||.+++++.+++..+++ .+++.|++|||+|||.|+| |+++.
T Consensus 121 --~~~~~~wC~~~fL~~~~l~~~~~ir~QL~~~l~~~~~~~~s~~----~~~~~i~~~L~aG~~~nvA~~~~~~~Y~~~~ 194 (270)
T 3i4u_A 121 --NKFSNPWCYENFIQARSLRRAQDIRKQMLGIMDRHKLDVVSCG----KSTVRVQKAICSGFFRNAAKKDPQEGYRTLI 194 (270)
T ss_dssp --TTTCHHHHHHTTBCHHHHHHHHHHHHHHHHHHHHTTCCCCCCT----TCTHHHHHHHHHHHGGGEEEECSSSSEEETT
T ss_pred --cCchhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHcCCCcCCCc----chHHHHHHHHHHHhHHHHheeCCCCceEEcc
Confidence 2446789999999999999999999999999999998876643 3467899999999999998 56788
Q ss_pred CCcEEEEecCCcccc
Q psy2072 277 KSLVTGFFMQCLLGI 291 (294)
Q Consensus 277 ~~~~v~ihPsS~l~~ 291 (294)
+|+.|+|||+|+|..
T Consensus 195 ~~~~v~iHPsS~L~~ 209 (270)
T 3i4u_A 195 DQQVVYIHPSSALFN 209 (270)
T ss_dssp TCCEEEECTTSTTTT
T ss_pred CCCEEEECchhhhcC
Confidence 899999999999864
No 4
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.41 E-value=3.8e-14 Score=144.36 Aligned_cols=138 Identities=30% Similarity=0.530 Sum_probs=102.1
Q ss_pred hhhHHhhccCHHHHHhHHHHH-------HHHHHHHHHcCccCCCCCCCChhhHHHHHHHHHhchhhhHHHHhhcccccCC
Q psy2072 129 PQWCYDNFVNYRSLKSADNVR-------QQLSRIMDRFNLKRSSTEFTSKDYYINIRKSLVTGFFMQLIIVLAYPISSLP 201 (294)
Q Consensus 129 ~~~C~~~~L~~~aL~~a~~Ir-------~QL~~~l~~~~l~~~s~~~~d~~~~l~I~kal~aG~~~nvA~~~~~p~~iHP 201 (294)
...|.++.+.+.+|+++.+++ ++.....+++. ...+|+.++++++++|...- .
T Consensus 535 ~~~c~~~~l~i~a~ls~~~~f~~~~~~~~~~~~~~~~f~-----~~~~D~~~~l~~~~~~~~~~----~----------- 594 (773)
T 2xau_A 535 EFQCSQEILTIVAMLSVPNVFIRPTKDKKRADDAKNIFA-----HPDGDHITLLNVYHAFKSDE----A----------- 594 (773)
T ss_dssp GGTCHHHHHHHHHHHTSCCCBCCCTTCHHHHHHHHHTTC-----CTTBHHHHHHHHHHHHTSHH----H-----------
T ss_pred ccCchhHHHHHHHhcccCCcccCChHHHHHHHHHHHhcc-----CCCCcHHHHHHHHHHHHHhc----c-----------
Confidence 346889999999999876542 22222222232 12257788888887763310 0
Q ss_pred CccCCCCC-ccccccccccccccccHHHHHHHHHHHHHHcCCCCCCCCCCCcchhhhHHHHHHhhhhhhHH--------H
Q psy2072 202 TVSLDQED-PQWCYDNFVNYRSLKSADNVRQQLSRIMDRFNLKRSSTEFTSKDYYINIRKSLVTGFFMQDY--------Y 272 (294)
Q Consensus 202 sS~l~~~~-~~WC~~~~ln~r~L~~a~~ir~QL~~~~~~~~~~~~s~~~~~~~~~~~i~k~l~~Gff~n~A--------~ 272 (294)
.+.+ ..||.+|||++++|++|.++|+||.+++++++++..++......+++.|++||++|||.|+| |
T Consensus 595 ----~~~~~~~~c~~~~l~~~~l~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~g~~~~~a~~~~~~~~y 670 (773)
T 2xau_A 595 ----YEYGIHKWCRDHYLNYRSLSAADNIRSQLERLMNRYNLELNTTDYESPKYFDNIRKALASGFFMQVAKKRSGAKGY 670 (773)
T ss_dssp ----HHHCHHHHHHHTTBCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCTTSTTHHHHHHHHHHHHHTTSEEEECCC--CE
T ss_pred ----ccchHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcCCCcCCCCCCchhhHHHHHHHHHHhChHhheeeccCCCcc
Confidence 0123 57999999999999999999999999999999987765443444567899999999999997 4
Q ss_pred HHhcCCcEEEEecCCccc
Q psy2072 273 INIRKSLVTGFFMQCLLG 290 (294)
Q Consensus 273 ~~~~~~~~v~ihPsS~l~ 290 (294)
+++.+|+.|+|||+|+|.
T Consensus 671 ~~~~~~~~~~ihp~s~l~ 688 (773)
T 2xau_A 671 ITVKDNQDVLIHPSTVLG 688 (773)
T ss_dssp EETTTCCEEEECTTCCCC
T ss_pred eEeeCCCEEEECCCcccC
Confidence 566789999999999984
No 5
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=98.02 E-value=1.3e-05 Score=80.49 Aligned_cols=132 Identities=8% Similarity=-0.019 Sum_probs=93.2
Q ss_pred CCCHHHHHHHHHHhh------------hccHHHHHHHhCCCChHHHHHHHhhccC---CCCccchHHHhhcccccCCCcc
Q psy2072 5 PIVIETLMSGDELRT------------DLVSLESQMATLGSDNIVCVLTTTSCFA---PRVADNLDPIAALCQRYNIPHV 69 (294)
Q Consensus 5 pP~~~~l~~a~~~L~------------~lT~lG~~~~~~p~~p~~~~~ll~~~~~---~c~~~~~~~i~a~~~~~~~~~~ 69 (294)
+|+...+..|++.|. .+|++|+.|+.+|++|+.++|++.+... .|..+ ++.|+|
T Consensus 467 ~~~~~~~~~al~~L~~~g~i~~~~~~~~~t~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~i~---------- 535 (715)
T 2va8_A 467 QLVDVYFDRAIRWLLEHSFIKEEGNTFALTNFGKRVADLYINPFTADIIRKGLEGHKASCELA-YLHLLA---------- 535 (715)
T ss_dssp HHHHHHHHHHHHHHHHTTSEEECSSEEEECHHHHHHHHHTCCHHHHHHHHHHHHHSCCCCHHH-HHHHHH----------
T ss_pred hcchHHHHHHHHHHHHCcCEeecCCeEeeChHHHHHHHHcCCHhHHHHHHHHhhhccCCCHHH-HHHHhh----------
Confidence 455677999999997 5899999999999999999999999887 68888 999888
Q ss_pred ccchhhhhhHhhhhc-cccccCChhHHHHHHHHhh---h-hcc-C-CC-------CHhHHHHHHHHHHhcCCChhhHHhh
Q psy2072 70 INNAYGLQSTRLMKL-IQEAARPNEAKKAADDAKM---R-FAH-I-DG-------DHLTLLNVYHAFKQNQEDPQWCYDN 135 (294)
Q Consensus 70 ~~~~~~~~~~~~ls~-~~~f~~~~~~~~~~~~~~~---~-f~~-~-~g-------Dhlt~l~~~~~~~~~~~~~~~C~~~ 135 (294)
+.+. .++++++.+.....+...+ . +.. + .. .|+-..-++++|........+|...
T Consensus 536 -----------~~~e~~~~~~r~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~~~~~~~~~~i~~~y 604 (715)
T 2va8_A 536 -----------FTPDGPLVSVGRNEEEELIELLEDLDCELLIEEPYEEDEYSLYINALKVALIMKDWMDEVDEDTILSKY 604 (715)
T ss_dssp -----------HSTTSCCCCCCHHHHHHHHHHHTTCSSCCSSCCCSSHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred -----------cCcccccCccChHHHHHHHHHHHhcchhhcccccccccchhhhHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 6664 6788887665543322211 0 110 1 00 3445666778888777777899999
Q ss_pred ccCHHHHHhHHHHHHHHHHHHHH
Q psy2072 136 FVNYRSLKSADNVRQQLSRIMDR 158 (294)
Q Consensus 136 ~L~~~aL~~a~~Ir~QL~~~l~~ 158 (294)
++....+..+.+....+...+.+
T Consensus 605 ~~~~gdl~~l~~~a~~l~~a~~~ 627 (715)
T 2va8_A 605 NIGSGDLRNMVETMDWLTYSAYH 627 (715)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCChhhHHHHHHHHHHHHHHHHH
Confidence 99888777776554444444333
No 6
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=98.01 E-value=5.8e-05 Score=75.68 Aligned_cols=121 Identities=7% Similarity=-0.042 Sum_probs=89.4
Q ss_pred CCCHHHHHHHHHHhh-----------hccHHHHHHHhCCCChHHHHHHHhhccC--CCCccchHHHhhcccccCCCcccc
Q psy2072 5 PIVIETLMSGDELRT-----------DLVSLESQMATLGSDNIVCVLTTTSCFA--PRVADNLDPIAALCQRYNIPHVIN 71 (294)
Q Consensus 5 pP~~~~l~~a~~~L~-----------~lT~lG~~~~~~p~~p~~~~~ll~~~~~--~c~~~~~~~i~a~~~~~~~~~~~~ 71 (294)
||..+.+..|++.|. .+|++|+.|+.+|++|+.+++++.+... .|..+ ++.|++
T Consensus 449 ~~~~~~~~~al~~L~~~g~i~~~~~~~~t~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~i~------------ 515 (702)
T 2p6r_A 449 ISLSYELERVVRQLENWGMVVEAAHLAPTKLGSLVSRLYIDPLTGFIFHDVLSRMELSDIG-ALHLIC------------ 515 (702)
T ss_dssp CCCHHHHHHHHHHHHHTTSEEESSSEEECHHHHHHHHTTCCHHHHHHHHHHTTTCCCCHHH-HHHHHH------------
T ss_pred HHHHHHHHHHHHHHHHCcCeeECCeeccChHHHHHHHHhCCHHHHHHHHHHhhcccCCHHH-HHHHhh------------
Confidence 788999999999996 4899999999999999999999999988 88888 999988
Q ss_pred chhhhhhHhhhhc-cccccCChhHHHHHHHH-h--hhh-ccC--CC-------CHhHHHHHHHHHHhcCCChhhHHhhcc
Q psy2072 72 NAYGLQSTRLMKL-IQEAARPNEAKKAADDA-K--MRF-AHI--DG-------DHLTLLNVYHAFKQNQEDPQWCYDNFV 137 (294)
Q Consensus 72 ~~~~~~~~~~ls~-~~~f~~~~~~~~~~~~~-~--~~f-~~~--~g-------Dhlt~l~~~~~~~~~~~~~~~C~~~~L 137 (294)
+.+. .++++++.+ ..-.+.. + ..+ ..+ .. .|+-..-++++|.....-...|.++++
T Consensus 516 ---------~~~e~~~i~~r~~e-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~lL~~~~~~~~l~~i~~~~~~ 585 (702)
T 2p6r_A 516 ---------RTPDMERLTVRKTD-SWVEEEAFRLRKELSYYPSDFSVEYDWFLSEVKTALCLKDWIEEKDEDEICAKYGI 585 (702)
T ss_dssp ---------HSTTSCCCCCCTTT-HHHHHHHHHHGGGSSCCCCTTSTTHHHHHHHHHHHHHHHHHHTTCCHHHHHHHTTC
T ss_pred ---------CCcccccCCCCCch-HHHHHHHHhccccccCCcchhhhhhhhhhhhHHHHHHHHHHHcCCChHHHHHHhCC
Confidence 7665 568888877 3222111 1 122 111 11 455667778889876666778888888
Q ss_pred CHHHHHhHHHH
Q psy2072 138 NYRSLKSADNV 148 (294)
Q Consensus 138 ~~~aL~~a~~I 148 (294)
...-+..+.+-
T Consensus 586 ~~gdl~~i~~~ 596 (702)
T 2p6r_A 586 APGDLRRIVET 596 (702)
T ss_dssp CHHHHHHHHHH
T ss_pred cHHhHHHHHHH
Confidence 76666655443
No 7
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=97.71 E-value=0.00011 Score=74.03 Aligned_cols=120 Identities=13% Similarity=-0.003 Sum_probs=84.6
Q ss_pred CCCHHHHHHHHHHhh-------------hccHHHHHHHhCCCChHHHHHHHhhccC----CCCccchHHHhhcccccCCC
Q psy2072 5 PIVIETLMSGDELRT-------------DLVSLESQMATLGSDNIVCVLTTTSCFA----PRVADNLDPIAALCQRYNIP 67 (294)
Q Consensus 5 pP~~~~l~~a~~~L~-------------~lT~lG~~~~~~p~~p~~~~~ll~~~~~----~c~~~~~~~i~a~~~~~~~~ 67 (294)
+|..+.+..|++.|. .+|++|+.|+.+|++|..+++++.+... +|..+ ++.|+|
T Consensus 450 ~~~~~~~~~~l~~L~~~~~i~~~~~~~~~~t~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~i~~-------- 520 (720)
T 2zj8_A 450 YSLEEKIRNILYFLLENEFIEISLEDKIRPLSLGIRTAKLYIDPYTAKMFKDKMEEVVKDPNPIG-IFHLIS-------- 520 (720)
T ss_dssp HHHHHHHHHHHHHHHHTTSEEECTTSCEEECHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCCHHH-HHHHHH--------
T ss_pred HHHHHHHHHHHHHHHHCCCeeECCCCcEeeChHHHHHHHHcCCHHHHHHHHHHHHhhccCCCHHH-HHHHhc--------
Confidence 344578899999886 4799999999999999999999999887 89999 999999
Q ss_pred ccccchhhhhhHhhhhc-cccccCChhHHHHHHHHhh---hh----ccCCC----------CHhHHHHHHHHHHhcCCCh
Q psy2072 68 HVINNAYGLQSTRLMKL-IQEAARPNEAKKAADDAKM---RF----AHIDG----------DHLTLLNVYHAFKQNQEDP 129 (294)
Q Consensus 68 ~~~~~~~~~~~~~~ls~-~~~f~~~~~~~~~~~~~~~---~f----~~~~g----------Dhlt~l~~~~~~~~~~~~~ 129 (294)
+++. .++|+++.+.+...+.... .+ ....+ .++-..-++++|.....-.
T Consensus 521 -------------~~~e~~~i~~r~~e~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~k~~llL~~~i~~~~l~ 587 (720)
T 2zj8_A 521 -------------LTPDITPFNYSKREFERLEEEYYEFKDRLYFDDPYISGYDPYLERKFFRAFKTALVLLAWINEVPEG 587 (720)
T ss_dssp -------------TSTTCCCCCCCHHHHHHHHHHHHHHGGGCSSCCTTSSCCCHHHHHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred -------------cCccccccccCHHHHHHHHHHHHhccccccccccccccccchhhhhHHHHHHHHHHHHHHHhCCCHH
Confidence 8876 6788888765543322111 01 01111 2444556667787655556
Q ss_pred hhHHhhccCHHHHHhHH
Q psy2072 130 QWCYDNFVNYRSLKSAD 146 (294)
Q Consensus 130 ~~C~~~~L~~~aL~~a~ 146 (294)
..+.++.+...-+..+.
T Consensus 588 ~i~~~~~~~~gdl~~~~ 604 (720)
T 2zj8_A 588 EIVEKYSVEPGDIYRIV 604 (720)
T ss_dssp HHHHHHTCCHHHHHHHH
T ss_pred HHHHHhCCChHhHHHHH
Confidence 67777777666555543
No 8
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=52.85 E-value=31 Score=38.10 Aligned_cols=50 Identities=6% Similarity=-0.126 Sum_probs=40.3
Q ss_pred HHHHHHHHhh--------------hccHHHHHHHhCCCChHHHHHHHhhccCCCCccchHHHhh
Q psy2072 10 TLMSGDELRT--------------DLVSLESQMATLGSDNIVCVLTTTSCFAPRVADNLDPIAA 59 (294)
Q Consensus 10 ~l~~a~~~L~--------------~lT~lG~~~~~~p~~p~~~~~ll~~~~~~c~~~~~~~i~a 59 (294)
.+..|++.|. ..|++|+.|+.+.++|.-.+.+.....-.+.+.+++.+.+
T Consensus 555 ~i~~~~~~L~~~~li~~d~~~~~~~~T~lGr~~s~~yi~~~t~~~~~~~l~~~~~~~~ll~~is 618 (1724)
T 4f92_B 555 LVHTAALMLDKNNLVKYDKKTGNFQVTELGRIASHYYITNDTVQTYNQLLKPTLSEIELFRVFS 618 (1724)
T ss_dssp HHHHHHHHHHHTTSEEECTTTCBEEECHHHHHHHHTTCCHHHHHHHHHHCCTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCeeeecCCCccccchHHHHHHHhcCCHHHHHHHHhhcCCCCCHHHHHHHHh
Confidence 4567777776 5799999999999999999999988877766654666666
No 9
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=52.80 E-value=32 Score=37.96 Aligned_cols=50 Identities=14% Similarity=-0.110 Sum_probs=40.6
Q ss_pred HHHHHHHHhh-------------hccHHHHHHHhCCCChHHHHHHHhhccCCCCccchHHHhh
Q psy2072 10 TLMSGDELRT-------------DLVSLESQMATLGSDNIVCVLTTTSCFAPRVADNLDPIAA 59 (294)
Q Consensus 10 ~l~~a~~~L~-------------~lT~lG~~~~~~p~~p~~~~~ll~~~~~~c~~~~~~~i~a 59 (294)
.++.+++.|. ..|++|+.++.+.++|.-++++..+...++...|++.+++
T Consensus 1387 lv~~~l~~L~~~~~I~~~~~~~l~~T~lG~i~s~~yi~~~t~~~~~~~l~~~~~~~~~L~il~ 1449 (1724)
T 4f92_B 1387 LVEQTLSDLEQSKCISIEDEMDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKVRGLIEIIS 1449 (1724)
T ss_dssp HHHHHHHHHHHTTSEEEETTTEEEECHHHHHHHHTTCCHHHHHHHHHHCCTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEcCCCCEeecHHHHHHHHHCCCHHHHHHHHHhccccCCHHHHHHHhc
Confidence 3556677775 4599999999999999999999999888877665776666
No 10
>1oeg_A Apolipoprotein E; sialic acid, heparin-binding, repeat, signal, disease mutation, polymorphism; NMR {Homo sapiens} SCOP: j.39.1.1
Probab=51.88 E-value=4.5 Score=22.31 Aligned_cols=18 Identities=6% Similarity=0.385 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHcCCC
Q psy2072 226 ADNVRQQLSRIMDRFNLK 243 (294)
Q Consensus 226 a~~ir~QL~~~~~~~~~~ 243 (294)
+.++|+|+..+++++.-.
T Consensus 3 ~e~mr~Q~~~lveKvq~a 20 (26)
T 1oeg_A 3 VEDMQRQWAGLVEKVQAA 20 (26)
T ss_dssp HHHTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 678999999999987543
No 11
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=40.33 E-value=21 Score=28.39 Aligned_cols=33 Identities=15% Similarity=0.266 Sum_probs=21.9
Q ss_pred CCCCCCHHHHHHHHHHhh--hc--cHHHHHHHhCCCC
Q psy2072 2 SLHPIVIETLMSGDELRT--DL--VSLESQMATLGSD 34 (294)
Q Consensus 2 ~l~pP~~~~l~~a~~~L~--~l--T~lG~~~~~~p~~ 34 (294)
|-+||.++.|..++..|. -- +..=.+++.||.+
T Consensus 18 ~~~p~~~~elik~L~~le~sassDa~vrq~Ia~LP~e 54 (152)
T 4fla_A 18 GAGPLLTEELIKALQDLENAASGDATVRQKIASLPQE 54 (152)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHHTSCGG
T ss_pred CCCCCCHHHHHHHHHHhhccccchHHHHHHHHcCCcc
Confidence 568999999999999998 12 2234789999974
No 12
>1oef_A Apolipoprotein E; glycoprotein, plasma, lipid transport, HDL, VLDL, chylomicron, sialic acid, heparin-binding; NMR {Homo sapiens} SCOP: j.39.1.1
Probab=35.26 E-value=27 Score=18.83 Aligned_cols=15 Identities=7% Similarity=0.481 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHc
Q psy2072 226 ADNVRQQLSRIMDRF 240 (294)
Q Consensus 226 a~~ir~QL~~~~~~~ 240 (294)
+.+||.||..+.+.+
T Consensus 7 ~e~ik~q~~~i~e~i 21 (26)
T 1oef_A 7 VEDMQRQWAGLVEKV 21 (26)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 679999999998765
No 13
>3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens}
Probab=30.11 E-value=8.1 Score=36.85 Aligned_cols=30 Identities=47% Similarity=0.976 Sum_probs=26.6
Q ss_pred CCccchHHHhhcccccCCCccccchhhhhhH
Q psy2072 49 RVADNLDPIAALCQRYNIPHVINNAYGLQST 79 (294)
Q Consensus 49 c~~~~~~~i~a~~~~~~~~~~~~~~~~~~~~ 79 (294)
+.++ +-.|+.+|..++++++|++|||....
T Consensus 231 ~~dd-I~eIaeIch~~gIpllVDeAhGah~~ 260 (501)
T 3hl2_A 231 VPDR-LEELAVICANYDIPHIVNNAYGVQSS 260 (501)
T ss_dssp CCCC-HHHHHHHHHHHTCCEEEECTTCTTCH
T ss_pred cccc-HHHHHHHHHHcCCeEEEeCcchhhhh
Confidence 4467 99999999999999999999998763
No 14
>3im1_A Protein SNU246, PRE-mRNA-splicing helicase BRR2; ATPase, RNA helicase, rnpase, RNA unwindase, molecular model mRNA splicing; 1.65A {Saccharomyces cerevisiae} PDB: 3im2_A* 3hib_A
Probab=21.88 E-value=2.8e+02 Score=24.21 Aligned_cols=40 Identities=10% Similarity=-0.052 Sum_probs=31.8
Q ss_pred hccHHHHHHHhCCCChHHHHHHHhhccCCCCccchHHHhh
Q psy2072 20 DLVSLESQMATLGSDNIVCVLTTTSCFAPRVADNLDPIAA 59 (294)
Q Consensus 20 ~lT~lG~~~~~~p~~p~~~~~ll~~~~~~c~~~~~~~i~a 59 (294)
.-|++|+.+|.+-+++.-.+.+.....-+....+++.+.|
T Consensus 10 ~~t~lG~iaS~yYi~~~T~~~f~~~l~~~~~~~~lL~ils 49 (328)
T 3im1_A 10 STLSNGLIASHYGVSFFTIQSFVSSLSNTSTLKNMLYVLS 49 (328)
T ss_dssp TTSSSCBCCCCCCCCHHHHHHHHHHCCTTCCHHHHHHHHH
T ss_pred cCCchhHHHHHHCCCHHHHHHHHHHhcccCCHHHHHHHhc
Confidence 3588999999999999999999988776655554665555
Done!