RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy2072
(294 letters)
>gnl|CDD|211833 TIGR03531, selenium_SpcS, O-phosphoseryl-tRNA(Sec) selenium
transferase. In the archaea and eukaryotes, the
conversion of the mischarged serine to selenocysteine
(Sec) on its tRNA is accomplished in two steps. This
enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase,
acts second, after a phosphophorylation step catalyzed
by a homolog of the bacterial SelA protein [Protein
synthesis, tRNA aminoacylation].
Length = 444
Score = 139 bits (351), Expect = 5e-38
Identities = 47/88 (53%), Positives = 66/88 (75%)
Query: 3 LHPIVIETLMSGDELRTDLVSLESQMATLGSDNIVCVLTTTSCFAPRVADNLDPIAALCQ 62
P VIET++ GDEL TD+ +E + +G DNI+CVL+TTSCFAPR D+++ IA +C
Sbjct: 173 FEPRVIETVLDGDELTTDVEDIERAIEEIGPDNILCVLSTTSCFAPRSPDDIEEIAKICA 232
Query: 63 RYNIPHVINNAYGLQSTRLMKLIQEAAR 90
Y+IPH++NNAYGLQS + M+LI +A +
Sbjct: 233 NYDIPHIVNNAYGLQSNKYMELINKAIK 260
>gnl|CDD|218796 pfam05889, SLA_LP_auto_ag, Soluble liver antigen/liver pancreas
antigen (SLA/LP autoantigen). This family consists of
several eukaryotic and archaeal proteins which are
related to the human soluble liver antigen/liver
pancreas antigen (SLA/LP autoantigen). Autoantibodies
are a hallmark of autoimmune hepatitis, but most are not
disease specific. Autoantibodies to soluble liver
antigen (SLA) and to liver and pancreas antigen (LP)
have been described as disease specific, occurring in
about 30% of all patients with autoimmune hepatitis. The
function of SLA/LP is unknown, however, it has been
suggested that the protein may function as a serine
hydroxymethyltransferase and may be an important enzyme
in the thus far poorly understood selenocysteine
pathway. The archaeal sequences Methanopyrus kandleri
spcS and MK0229 are annotated as being pyridoxal
phosphate-dependent enzymes.
Length = 386
Score = 106 bits (266), Expect = 2e-26
Identities = 39/88 (44%), Positives = 61/88 (69%)
Query: 3 LHPIVIETLMSGDELRTDLVSLESQMATLGSDNIVCVLTTTSCFAPRVADNLDPIAALCQ 62
P ++ET++ GD L TD+ +E+ + G + I+ VL+TTSCFAPR D + IA +C
Sbjct: 123 FEPRLVETVLEGDYLITDVNDVETIIEEKGEEVILAVLSTTSCFAPRSPDRVKEIAKICA 182
Query: 63 RYNIPHVINNAYGLQSTRLMKLIQEAAR 90
Y++PH++N AYG+QS + + LIQ+AA+
Sbjct: 183 EYDVPHLVNGAYGIQSEKYIHLIQQAAK 210
>gnl|CDD|224557 COG1643, HrpA, HrpA-like helicases [DNA replication, recombination,
and repair].
Length = 845
Score = 68.5 bits (168), Expect = 6e-13
Identities = 25/155 (16%), Positives = 46/155 (29%), Gaps = 25/155 (16%)
Query: 86 QEAARPNEAKKAADDAKMRFA-HIDGDHLTLLNVYHAFKQNQEDP------QWCYDNFVN 138
+ + A+ K R A GDHL LL + + C
Sbjct: 506 VKLRKQRTAQDLLKRLKRRNAADPRGDHLLLLEAFPDRIARKRAKGEYLRANGCRAMLFP 565
Query: 139 YRSLKSADNVRQQLSRIMDR-FNLKRSSTEF--------------TSKDYYINIRKSLVT 183
++L A + L ++ E S+ + +IR +L
Sbjct: 566 TKALSRAPWIIAALLVQTSALAGRILAAAEIDEDEWAAQHLPEHCYSEPIWDDIRGALAA 625
Query: 184 GFFMQLIIVLAYPISSLPTVSLDQEDPQWCYDNFV 218
G + + + P V+L P + + + V
Sbjct: 626 GRKLN---IAQLQLDGRPYVTLSDNTPVFAHPSSV 657
Score = 39.6 bits (93), Expect = 0.002
Identities = 10/84 (11%), Positives = 22/84 (26%), Gaps = 15/84 (17%)
Query: 211 QWCYDNFVNYRSLKSADNVRQQLSRIMDR-FNLKRSSTEF--------------TSKDYY 255
C ++L A + L ++ E S+ +
Sbjct: 557 NGCRAMLFPTKALSRAPWIIAALLVQTSALAGRILAAAEIDEDEWAAQHLPEHCYSEPIW 616
Query: 256 INIRKSLVTGFFMQDYYINIRKSL 279
+IR +L G + + +
Sbjct: 617 DDIRGALAAGRKLNIAQLQLDGRP 640
>gnl|CDD|182986 PRK11131, PRK11131, ATP-dependent RNA helicase HrpA; Provisional.
Length = 1294
Score = 47.4 bits (113), Expect = 7e-06
Identities = 22/101 (21%), Positives = 50/101 (49%), Gaps = 10/101 (9%)
Query: 90 RPNEAKKAADDAKMRFAHIDGDHLTLLNVYHAFKQNQED------PQWCYDNFVNYRSLK 143
RP + ++A+D+ RFA + D L +N+++ ++ Q+ + C +++NY ++
Sbjct: 529 RPMDKQQASDEKHRRFADKESDFLAFVNLWNYLQEQQKALSSNQFRRLCRTDYLNYLRVR 588
Query: 144 SADNVRQQLSRIMDRFNLKRSSTEFTSKDYYINIRKSLVTG 184
++ QL +++ + +S Y I +L+TG
Sbjct: 589 EWQDIYTQLRQVVKELGIPVNSEPAE----YREIHTALLTG 625
>gnl|CDD|233659 TIGR01967, DEAH_box_HrpA, ATP-dependent helicase HrpA. This model
represents HrpA, one of two related but uncharacterized
DEAH-box ATP-dependent helicases in many Proteobacteria
and a few high-GC Gram-positive bacteria. HrpA is about
1300 amino acids long, while its paralog HrpB, also
uncharacterized, is about 800 amino acids long. Related
characterized eukarotic proteins are RNA helicases
associated with pre-mRNA processing [Unknown function,
Enzymes of unknown specificity].
Length = 1283
Score = 47.1 bits (112), Expect = 7e-06
Identities = 26/106 (24%), Positives = 52/106 (49%), Gaps = 10/106 (9%)
Query: 90 RPNEAKKAADDAKMRFAHIDGDHLTLLNVYHAFKQNQED------PQWCYDNFVNYRSLK 143
RP E ++AAD A RF D L+ +N++ ++ ++ C ++NY ++
Sbjct: 520 RPMEKQQAADQAHARFKDPRSDFLSRVNLWRHIEEQRQALSANQFRNACRKQYLNYLRVR 579
Query: 144 SADNVRQQLSRIMDRFNLKRSSTEFTSKDYYINIRKSLVTGFFMQL 189
++ +QL++++ LK + DY I K+L++G Q+
Sbjct: 580 EWQDIYRQLTQVVKELGLKLNE---EPADYDA-IHKALLSGLLSQI 621
>gnl|CDD|219532 pfam07717, OB_NTP_bind, Oligonucleotide/oligosaccharide-binding
(OB)-fold. This family is found towards the C-terminus
of the DEAD-box helicases (pfam00270). In these
helicases it is apparently always found in association
with pfam04408. There do seem to be a couple of
instances where it occurs by itself - . The structure
PDB:3i4u adopts an OB-fold. helicases (pfam00270). In
these helicases it is apparently always found in
association with pfam04408. This C-terminal domain of
the yeast helicase contains an
oligonucleotide/oligosaccharide-binding (OB)-fold which
seems to be placed at the entrance of the putative
nucleic acid cavity. It also constitutes the binding
site for the G-patch-containing domain of Pfa1p. When
found on DEAH/RHA helicases, this domain is central to
the regulation of the helicase activity through its
binding of both RNA and G-patch domain proteins.
Length = 109
Score = 39.2 bits (92), Expect = 3e-04
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 150 QQLSRIMDRFNLK--RSSTEFTSKDYYINIRKSLVTGFFMQL 189
+QL I++R L SS +S + Y IRK+L G F +
Sbjct: 1 KQLLEILERLGLPEEPSSLLNSSSNDYELIRKALCAGLFPNV 42
Score = 38.4 bits (90), Expect = 5e-04
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 231 QQLSRIMDRFNLK--RSSTEFTSKDYYINIRKSLVTGFFMQ 269
+QL I++R L SS +S + Y IRK+L G F
Sbjct: 1 KQLLEILERLGLPEEPSSLLNSSSNDYELIRKALCAGLFPN 41
>gnl|CDD|237314 PRK13238, tnaA, tryptophanase/L-cysteine desulfhydrase,
PLP-dependent; Provisional.
Length = 460
Score = 40.6 bits (96), Expect = 6e-04
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 10/65 (15%)
Query: 20 DLVSLESQMATLGSDNIVCVLTTTSCFA----PRVADNLDPIAALCQRYNIPHVIN---- 71
DL LE+ + +G++N+ ++ T + + P NL + + ++Y IP VI+
Sbjct: 162 DLEKLEALIEEVGAENVPFIVMTITNNSAGGQPVSMANLRAVYEIAKKYGIPVVIDAARF 221
Query: 72 --NAY 74
NAY
Sbjct: 222 AENAY 226
>gnl|CDD|218070 pfam04408, HA2, Helicase associated domain (HA2). This presumed
domain is about 90 amino acid residues in length. It is
found is a diverse set of RNA helicases. Its function is
unknown, however it seems likely to be involved in
nucleic acid binding.
Length = 91
Score = 38.0 bits (89), Expect = 6e-04
Identities = 14/27 (51%), Positives = 19/27 (70%)
Query: 90 RPNEAKKAADDAKMRFAHIDGDHLTLL 116
RP E ++ AD A+ +FA + DHLTLL
Sbjct: 65 RPKEKEEEADAARRKFASAESDHLTLL 91
>gnl|CDD|214852 smart00847, HA2, Helicase associated domain (HA2) Add an
annotation. This presumed domain is about 90 amino acid
residues in length. It is found is a diverse set of RNA
helicases. Its function is unknown, however it seems
likely to be involved in nucleic acid binding.
Length = 82
Score = 34.9 bits (81), Expect = 0.005
Identities = 15/27 (55%), Positives = 19/27 (70%)
Query: 90 RPNEAKKAADDAKMRFAHIDGDHLTLL 116
RP E ++ AD A+ RFA + DHLTLL
Sbjct: 56 RPKEKREDADAARRRFADPESDHLTLL 82
>gnl|CDD|131666 TIGR02617, tnaA_trp_ase, tryptophanase, leader peptide-associated.
Members of this family belong to the beta-eliminating
lyase family (pfam01212) and act as tryptophanase
(L-tryptophan indole-lyase). The tryptophanases of this
family, as a rule, are found with a tryptophanase leader
peptide (TnaC) encoded upstream. Both tryptophanases
(4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are
found between trusted and noise cutoffs, but this model
captures nearly all tryptophanases for which the leader
peptide gene tnaC can be found upstream [Energy
metabolism, Amino acids and amines].
Length = 467
Score = 37.2 bits (86), Expect = 0.007
Identities = 16/58 (27%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Query: 20 DLVSLESQMATLGSDNIVCVLTTTSCFA----PRVADNLDPIAALCQRYNIPHVINNA 73
DL LE + +G +N+ ++ T +C + P NL + + ++Y+IP V+++A
Sbjct: 168 DLEGLERGIEEVGPNNVPYIVATITCNSAGGQPVSLANLKAVYEIAKKYDIPVVMDSA 225
>gnl|CDD|223154 COG0076, GadB, Glutamate decarboxylase and related PLP-dependent
proteins [Amino acid transport and metabolism].
Length = 460
Score = 35.4 bits (82), Expect = 0.028
Identities = 13/65 (20%), Positives = 28/65 (43%), Gaps = 4/65 (6%)
Query: 12 MSGDELRTDLVSLESQMATLGSDN-IVCVLTTTSCFAPRVADNLDPIAALCQRYNIPHVI 70
+ R D+ +LE + +V TT + D+++ +A + + Y I +
Sbjct: 186 TVPTDYRIDVDALEEAIDENTIGGVVVGTAGTTDTGS---IDDIEELADIAEEYGIWLHV 242
Query: 71 NNAYG 75
+ A+G
Sbjct: 243 DAAFG 247
>gnl|CDD|99743 cd06450, DOPA_deC_like, DOPA decarboxylase family. This family
belongs to pyridoxal phosphate (PLP)-dependent aspartate
aminotransferase superfamily (fold I). The major groups
in this CD correspond to DOPA/tyrosine decarboxylase
(DDC), histidine decarboxylase (HDC), and glutamate
decarboxylase (GDC). DDC is active as a dimer and
catalyzes the decarboxylation of tyrosine. GDC catalyzes
the decarboxylation of glutamate and HDC catalyzes the
decarboxylation of histidine.
Length = 345
Score = 34.5 bits (80), Expect = 0.060
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 5/41 (12%)
Query: 36 IVCVLTTTSCFAPRVADNLDPIAALCQRYNIP-HVINNAYG 75
+V TT A D L+ IA L ++Y++ HV + AYG
Sbjct: 152 VVATAGTTDTGA---IDPLEEIADLAEKYDLWLHV-DAAYG 188
>gnl|CDD|236517 PRK09440, avtA, valine--pyruvate transaminase; Provisional.
Length = 416
Score = 34.1 bits (79), Expect = 0.068
Identities = 10/19 (52%), Positives = 16/19 (84%)
Query: 57 IAALCQRYNIPHVINNAYG 75
+ AL +++NIP +I+NAYG
Sbjct: 204 LDALARQHNIPLLIDNAYG 222
>gnl|CDD|225576 COG3033, TnaA, Tryptophanase [Amino acid transport and metabolism].
Length = 471
Score = 34.4 bits (79), Expect = 0.068
Identities = 21/101 (20%), Positives = 44/101 (43%), Gaps = 19/101 (18%)
Query: 20 DLVSLESQMATLGSDNIVCVLTT----TSCFAPRVADNLDPIAALCQRYNIPHVIN---- 71
DL LE + +G+DN+ ++ T ++ P N+ + + ++Y+IP V++
Sbjct: 170 DLEKLERLIDEVGADNVPYIVLTITNNSAGGQPVSMANMKAVYEIAKKYDIPVVMDAARF 229
Query: 72 --NAYGLQSTRLMKLIQEAARPNEAKKAADDAKMRFAHIDG 110
NAY I++ + A+ +++ DG
Sbjct: 230 AENAY---------FIKQREPGYRDWSIEEIAREMYSYADG 261
>gnl|CDD|219363 pfam07287, DUF1446, Protein of unknown function (DUF1446). This
family consists of several bacterial and plant proteins
of around 400 residues in length. The function of this
family is unknown.
Length = 362
Score = 34.0 bits (79), Expect = 0.070
Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 8/70 (11%)
Query: 45 CFAPRVADNLDPIAALCQRYNIPHVINNAYGLQSTRLMKLIQEAARPNEAKKAADDAKMR 104
+AP + L+P+ LC I ++ NA L + ++E A E ++
Sbjct: 51 GYAPTFLERLEPVLPLCAEKGIR-IVTNAGALNPEGAARAVRELAA--ELG-----LSLK 102
Query: 105 FAHIDGDHLT 114
A ++GD +
Sbjct: 103 VAVVEGDDVL 112
>gnl|CDD|99741 cd00617, Tnase_like, Tryptophanase family (Tnase). This family
belongs to pyridoxal phosphate (PLP)-dependent aspartate
aminotransferase superfamily (fold I). The major groups
in this CD correspond to tryptophanase (Tnase) and
tyrosine phenol-lyase (TPL). Tnase and TPL are active as
tetramers and catalyze beta-elimination reactions. Tnase
catalyzes degradation of L-tryptophan to yield indole,
pyruvate and ammonia and TPL catalyzes degradation of
L-tyrosine to yield phenol, pyruvate and ammonia.
Length = 431
Score = 34.3 bits (79), Expect = 0.072
Identities = 27/101 (26%), Positives = 44/101 (43%), Gaps = 19/101 (18%)
Query: 20 DLVSLESQMATLGSDNIVCVLTT----TSCFAPRVADNLDPIAALCQRYNIPHVIN---- 71
D+ LE + +G++NI ++ T T+ P NL + L +Y IP V++
Sbjct: 137 DVAKLEKLIDEVGAENIPYIVLTITNNTAGGQPVSMANLREVRELAHKYGIPVVLDAARF 196
Query: 72 --NAYGLQSTRLMKLIQEAARPNEAKKAADDAKMRFAHIDG 110
NAY I+E K A+ A+ F++ DG
Sbjct: 197 AENAY---------FIKEREEGYRDKSIAEIAREMFSYADG 228
>gnl|CDD|226485 COG3977, COG3977, Alanine-alpha-ketoisovalerate (or
valine-pyruvate) aminotransferase [Amino acid transport
and metabolism].
Length = 417
Score = 31.7 bits (72), Expect = 0.50
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 52 DNLDPIAALCQRYNIPHVINNAYG 75
+ L + AL +++ IP +I+NAYG
Sbjct: 199 EELAKLDALARQHGIPLIIDNAYG 222
>gnl|CDD|215836 pfam00282, Pyridoxal_deC, Pyridoxal-dependent decarboxylase
conserved domain.
Length = 373
Score = 29.7 bits (67), Expect = 2.0
Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 14/48 (29%)
Query: 29 ATLGSDNIVCVLTTTSC-FAPRVADNLDPIAALCQRYNIPHVINNAYG 75
ATLG TT S F D L + +C +Y++ ++ AY
Sbjct: 200 ATLG--------TTGSGAF-----DPLQELGDICNKYDLWLHVDAAYA 234
>gnl|CDD|221833 pfam12889, DUF3829, Protein of unknown function (DUF3829). This is
a small family of proteins from several bacterial
species, whose function is not known. It may, however,
be related to the GvpL_GvpF family of proteins,
pfam06386.
Length = 277
Score = 28.6 bits (64), Expect = 3.5
Identities = 9/80 (11%), Positives = 23/80 (28%), Gaps = 4/80 (5%)
Query: 81 LMKLIQEAARPNEAKKAADDAKMRFAHIDGDHLTLLNVYHAFKQNQEDPQWCYDNFVNYR 140
L + E +A + + + ++ FK + + + Y
Sbjct: 192 LDAALAEL---EKALEDLKKLTKEDGD-EEKASSFMSSADEFKSSAKSFIGRVRDKKPYS 247
Query: 141 SLKSADNVRQQLSRIMDRFN 160
S D +++ +N
Sbjct: 248 KSGSGDPTAGSPEDLLEAYN 267
>gnl|CDD|188122 TIGR01264, tyr_amTase_E, tyrosine aminotransferase, eukaryotic.
This model describes tyrosine aminotransferase as found
in animals and Trypanosoma cruzi. It is the first enzyme
of a pathway of tyrosine degradation via homogentisate.
Several plant enzyme designated as probable tyrosine
aminotransferases are very closely related to an
experimentally demonstrated nicotianamine
aminotransferase, an enzyme in a siderophore (iron
uptake chelator) biosynthesis pathway. These plant
sequences are excluded from the model seed and score
between the trusted an noise cutoffs [Energy metabolism,
Amino acids and amines].
Length = 401
Score = 29.0 bits (65), Expect = 3.6
Identities = 14/71 (19%), Positives = 29/71 (40%), Gaps = 13/71 (18%)
Query: 11 LMSGDELRTDLVSLESQMATLGSDNIVCVLTTT------SCFAPRVADNLDPIAALCQRY 64
L+ DL Q+ +L + ++ S F+ + +L+ I A+ +R
Sbjct: 148 LLPDKSWEIDL----KQLESLIDEKTAALVVNNPSNPCGSVFSRQ---HLEEILAVAERQ 200
Query: 65 NIPHVINNAYG 75
+P + + YG
Sbjct: 201 CLPIIADEIYG 211
>gnl|CDD|183283 PRK11706, PRK11706, TDP-4-oxo-6-deoxy-D-glucose transaminase;
Provisional.
Length = 375
Score = 28.3 bits (64), Expect = 5.3
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 50 VADNLDPIAALCQRYNIPHVINNAYGLQST 79
VA +D I AL +++N+ V + A G+ ST
Sbjct: 131 VACEMDTIMALAKKHNLFVVEDAAQGVMST 160
>gnl|CDD|216081 pfam00722, Glyco_hydro_16, Glycosyl hydrolases family 16.
Length = 174
Score = 27.5 bits (62), Expect = 5.4
Identities = 14/68 (20%), Positives = 25/68 (36%), Gaps = 17/68 (25%)
Query: 216 NFVNYRSLKSADNVR---QQLSRIMDRFNLKRSSTEFTSKDYY------INIRKS----L 262
++ NV L+ +D K + + F SK YY I+ + +
Sbjct: 1 FGEDFDVTWGGGNVSVSGGGLTLTLD----KYTGSGFKSKFYYLYGRFEARIKAANGAGV 56
Query: 263 VTGFFMQD 270
VT F++
Sbjct: 57 VTAFYLSS 64
Score = 27.2 bits (61), Expect = 7.9
Identities = 14/67 (20%), Positives = 25/67 (37%), Gaps = 17/67 (25%)
Query: 135 NFVNYRSLKSADNVR---QQLSRIMDRFNLKRSSTEFTSKDYY------INIRKS----L 181
++ NV L+ +D K + + F SK YY I+ + +
Sbjct: 1 FGEDFDVTWGGGNVSVSGGGLTLTLD----KYTGSGFKSKFYYLYGRFEARIKAANGAGV 56
Query: 182 VTGFFMQ 188
VT F++
Sbjct: 57 VTAFYLS 63
>gnl|CDD|216395 pfam01261, AP_endonuc_2, Xylose isomerase-like TIM barrel. This
TIM alpha/beta barrel structure is found in xylose
isomerase and in endonuclease IV (EC:3.1.21.2). This
domain is also found in the N termini of bacterial
myo-inositol catabolism proteins. These are involved in
the myo-inositol catabolism pathway, and is required for
growth on myo-inositol in Rhizobium leguminosarum bv.
viciae.
Length = 202
Score = 27.7 bits (62), Expect = 6.6
Identities = 15/77 (19%), Positives = 26/77 (33%), Gaps = 13/77 (16%)
Query: 28 MATLGSDNIVCVL-------TTTSCFAPRVADNLDPIAALCQRYNIP---HVINNAYGLQ 77
A LG+ +V R+A++L+ +A L + Y +
Sbjct: 73 AAALGAKVVVVHPGSAPAGKDREEALD-RLAESLNELAELAEEYGVKLALENHPGTGVEL 131
Query: 78 ST--RLMKLIQEAARPN 92
++LI E PN
Sbjct: 132 GYFEEALRLIDEVDSPN 148
>gnl|CDD|232945 TIGR00376, TIGR00376, DNA helicase, putative. The gene product may
represent a DNA helicase. Eukaryotic members of this
family have been characterized as binding certain
single-stranded G-rich DNA sequences (GGGGT and GGGCT).
A number of related proteins are characterized as
helicases [DNA metabolism, DNA replication,
recombination, and repair].
Length = 637
Score = 27.5 bits (61), Expect = 9.2
Identities = 10/38 (26%), Positives = 16/38 (42%), Gaps = 3/38 (7%)
Query: 192 VLAYPISSLPTVSLDQEDPQWCYDNFVNYRSLKSADNV 229
V+ TV+L++ PQW R A++V
Sbjct: 79 VVTRVGKRFITVALEESVPQWSLK---RVRIDLYANDV 113
>gnl|CDD|185071 PRK15116, PRK15116, sulfur acceptor protein CsdL; Provisional.
Length = 268
Score = 27.5 bits (61), Expect = 9.3
Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 12/57 (21%)
Query: 52 DNLDPIAAL---CQRYNIPHVINNAYG-------LQSTRLMKLIQE--AARPNEAKK 96
D++ P AAL C+R IP V G +Q L K IQ+ AA+ E K
Sbjct: 130 DSVRPKAALIAYCRRNKIPLVTTGGAGGQIDPTQIQVVDLAKTIQDPLAAKLRERLK 186
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.324 0.136 0.399
Gapped
Lambda K H
0.267 0.0751 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 14,569,354
Number of extensions: 1347385
Number of successful extensions: 1876
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1865
Number of HSP's successfully gapped: 39
Length of query: 294
Length of database: 10,937,602
Length adjustment: 96
Effective length of query: 198
Effective length of database: 6,679,618
Effective search space: 1322564364
Effective search space used: 1322564364
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 59 (26.5 bits)