RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2072
         (294 letters)



>d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS)
           {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 445

 Score = 64.6 bits (156), Expect = 2e-12
 Identities = 54/200 (27%), Positives = 88/200 (44%), Gaps = 27/200 (13%)

Query: 3   LHPIVIETLMSGDELRTDLVSLESQMATLGSDNIVCVLTTTSCFAPRVADNLDPIAALCQ 62
             P+VIE ++ GDELRTDL ++E+++  LG ++I+C+ +TT+CFAPRV D L+ +A +C 
Sbjct: 162 FEPVVIENVLEGDELRTDLKAVEAKIQELGPEHILCLHSTTACFAPRVPDRLEELAVICA 221

Query: 63  RYNIPHVINNAYGLQSTRLMKLIQEAAR-----------------------PNEAKKAAD 99
            Y+IPHV+NNAYGLQS++ M LIQ+ AR                            +   
Sbjct: 222 NYDIPHVVNNAYGLQSSKCMHLIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNEPFI 281

Query: 100 DAKMRFAHIDGDHLTLLNVYHAFKQNQEDPQWCYDNFVNYRSLKSADNVRQQLSRIMDRF 159
               +           L+V                        +    +  QL ++ +  
Sbjct: 282 QDISKMYPGRASASPSLDVLITLLSLGCSGYRKLLK----ERKEMFVYLSTQLKKLAEAH 337

Query: 160 NLKRSSTEFTSKDYYINIRK 179
           N +   T        + ++ 
Sbjct: 338 NERLLQTPHNPISLAMTLKT 357


>d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS)
           {Methanococcus maripaludis [TaxId: 39152]}
          Length = 434

 Score = 57.6 bits (138), Expect = 5e-10
 Identities = 34/185 (18%), Positives = 78/185 (42%), Gaps = 19/185 (10%)

Query: 3   LHPIVIETLMSGDELRTDLVSLESQM-ATLGSDNIVCVLTTTSCFAPRVADNLDPIAALC 61
           ++  ++ET++ GD +   +  +E+ +   +   N  CVL+T + F PR +D++  IA +C
Sbjct: 178 MNMRLVETVLDGDRVYVPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDDIVEIAKIC 237

Query: 62  QRYNIPHVINNAYGLQSTRLMKLIQEAARPNEAKKAADDAKMRFAHI--------DGDHL 113
           + Y+IPH+IN AY +Q+   ++ +++A +       +   K     I        D + +
Sbjct: 238 ENYDIPHIINGAYAIQNNYYLEKLKKAFKYRVDAVVSSSDKNLLTPIGGGLVYSTDAEFI 297

Query: 114 TLLNVYHAFKQNQEDPQWCY----------DNFVNYRSLKSADNVRQQLSRIMDRFNLKR 163
             +++ +  + +                     +      S   + + L+ +  +   K 
Sbjct: 298 KEISLSYPGRASATPVVNTLVSLLSMGSKNYLELVKNQKNSKKLLDELLNDLSKKTGGKF 357

Query: 164 SSTEF 168
              E 
Sbjct: 358 LDVES 362


>d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever
           virus [TaxId: 11089]}
          Length = 299

 Score = 48.4 bits (115), Expect = 3e-07
 Identities = 7/55 (12%), Positives = 15/55 (27%), Gaps = 3/55 (5%)

Query: 90  RPNEAKKAADDAKM-RFAHIDGDHLTLLNVYHAFKQNQEDPQWCYDNFVNYRSLK 143
            P E +   D  +  +     G    L   +   +      Q     F+ +   +
Sbjct: 246 GPEEHEILNDSGETVKCRAPGGAKKPLRPRWCDER--VSSDQSALSEFIKFAEGR 298



 Score = 26.9 bits (59), Expect = 3.4
 Identities = 2/15 (13%), Positives = 5/15 (33%)

Query: 210 PQWCYDNFVNYRSLK 224
            Q     F+ +   +
Sbjct: 284 DQSALSEFIKFAEGR 298


>d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola
           [TaxId: 549]}
          Length = 456

 Score = 31.7 bits (71), Expect = 0.091
 Identities = 17/96 (17%), Positives = 31/96 (32%), Gaps = 7/96 (7%)

Query: 20  DLVSLESQMATLGSDNIVCVLTTTSC----FAPRVADNLDPIAALCQRYNIPHVINNAYG 75
           DL  L + +   G++NI  +    +       P    N+  +  +   Y I    +    
Sbjct: 159 DLNKLATLIKEKGAENIAYICLAVTVNLAGGQPVSMANMRAVHEMASTYGIKIFYDAT-- 216

Query: 76  LQSTRLMKLIQEAARPNEAKKAADDAKMRFAHIDGD 111
            +       I+E     E     D     F++ DG 
Sbjct: 217 -RCVENAYFIKEQEAGYENVSIKDIVHEMFSYADGC 251


>d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase)
           {Proteus vulgaris [TaxId: 585]}
          Length = 465

 Score = 28.4 bits (62), Expect = 1.2
 Identities = 9/79 (11%), Positives = 28/79 (35%), Gaps = 3/79 (3%)

Query: 36  IVCVLTTTSCFAPRVADNLDPIAALCQRYNIPHVINNAYGLQSTRLMKLIQEAARPNEAK 95
           +  V   ++   P    NL  +  + +++ I  V+++A   +       I+      +  
Sbjct: 187 VSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCE---NAYFIKARDPKYKNA 243

Query: 96  KAADDAKMRFAHIDGDHLT 114
              +     + + D   ++
Sbjct: 244 TIKEVIFDMYKYADALTMS 262


>d2axte1 f.23.38.1 (E:3-84) Cytochrome b559 subunit alpha, PsbE
           {Thermosynechococcus elongatus [TaxId: 146786]}
          Length = 82

 Score = 25.9 bits (57), Expect = 1.8
 Identities = 9/39 (23%), Positives = 15/39 (38%)

Query: 133 YDNFVNYRSLKSADNVRQQLSRIMDRFNLKRSSTEFTSK 171
           YD F   R        ++ +  + DRF  K+    F  +
Sbjct: 42  YDVFGTPRPDSYYAQEQRSIPLVTDRFEAKQQVETFLEQ 80



 Score = 25.9 bits (57), Expect = 1.8
 Identities = 9/39 (23%), Positives = 15/39 (38%)

Query: 214 YDNFVNYRSLKSADNVRQQLSRIMDRFNLKRSSTEFTSK 252
           YD F   R        ++ +  + DRF  K+    F  +
Sbjct: 42  YDVFGTPRPDSYYAQEQRSIPLVTDRFEAKQQVETFLEQ 80


>d1fyva_ c.23.2.1 (A:) Toll-like receptor 1, TLR1 {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 161

 Score = 26.2 bits (57), Expect = 4.1
 Identities = 5/41 (12%), Positives = 19/41 (46%), Gaps = 1/41 (2%)

Query: 203 VSLDQEDPQWCYDNFVNYRSLKSADNVRQQLSRIMDRFNLK 243
           + L++      +  F++Y     +  V+ +L   +++  ++
Sbjct: 2   IPLEELQRNLQFHAFISYSG-HDSFWVKNELLPNLEKEGMQ 41


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.136    0.399 

Gapped
Lambda     K      H
   0.267   0.0442    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,048,788
Number of extensions: 45672
Number of successful extensions: 152
Number of sequences better than 10.0: 1
Number of HSP's gapped: 151
Number of HSP's successfully gapped: 12
Length of query: 294
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 209
Effective length of database: 1,240,546
Effective search space: 259274114
Effective search space used: 259274114
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 52 (24.5 bits)