BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2073
(126 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5RAZ4|DHX15_PONAB Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15
OS=Pongo abelii GN=DHX15 PE=2 SV=2
Length = 795
Score = 166 bits (419), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 71/94 (75%), Positives = 87/94 (92%)
Query: 29 LQVAHLEKDGRYLTIKDNQVVQLHPSTCLDHKPEWVVYNEFVLTTKNYIRTVTDVKPEWL 88
+QVAHLE+ G YLT+KDNQVVQLHPST LDHKPEWV+YNEFVLTTKNYIRT TD+KPEWL
Sbjct: 699 MQVAHLERTGHYLTVKDNQVVQLHPSTVLDHKPEWVLYNEFVLTTKNYIRTCTDIKPEWL 758
Query: 89 IKLAPQYYELQNFPQCEAKRQLEILQAKMETRQY 122
+K+APQYY++ NFPQCEAKRQL+ + AK+++++Y
Sbjct: 759 VKIAPQYYDMSNFPQCEAKRQLDRIIAKLQSKEY 792
>sp|O43143|DHX15_HUMAN Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15
OS=Homo sapiens GN=DHX15 PE=1 SV=2
Length = 795
Score = 166 bits (419), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 71/94 (75%), Positives = 87/94 (92%)
Query: 29 LQVAHLEKDGRYLTIKDNQVVQLHPSTCLDHKPEWVVYNEFVLTTKNYIRTVTDVKPEWL 88
+QVAHLE+ G YLT+KDNQVVQLHPST LDHKPEWV+YNEFVLTTKNYIRT TD+KPEWL
Sbjct: 699 MQVAHLERTGHYLTVKDNQVVQLHPSTVLDHKPEWVLYNEFVLTTKNYIRTCTDIKPEWL 758
Query: 89 IKLAPQYYELQNFPQCEAKRQLEILQAKMETRQY 122
+K+APQYY++ NFPQCEAKRQL+ + AK+++++Y
Sbjct: 759 VKIAPQYYDMSNFPQCEAKRQLDRIIAKLQSKEY 792
>sp|O35286|DHX15_MOUSE Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15
OS=Mus musculus GN=Dhx15 PE=2 SV=2
Length = 795
Score = 166 bits (419), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 71/94 (75%), Positives = 87/94 (92%)
Query: 29 LQVAHLEKDGRYLTIKDNQVVQLHPSTCLDHKPEWVVYNEFVLTTKNYIRTVTDVKPEWL 88
+QVAHLE+ G YLT+KDNQVVQLHPST LDHKPEWV+YNEFVLTTKNYIRT TD+KPEWL
Sbjct: 699 MQVAHLERTGHYLTVKDNQVVQLHPSTVLDHKPEWVLYNEFVLTTKNYIRTCTDIKPEWL 758
Query: 89 IKLAPQYYELQNFPQCEAKRQLEILQAKMETRQY 122
+K+APQYY++ NFPQCEAKRQL+ + AK+++++Y
Sbjct: 759 VKIAPQYYDMSNFPQCEAKRQLDRIIAKLQSKEY 792
>sp|O22899|DHX15_ARATH Probable pre-mRNA-splicing factor ATP-dependent RNA helicase
OS=Arabidopsis thaliana GN=At2g47250 PE=2 SV=1
Length = 729
Score = 146 bits (368), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 64/97 (65%), Positives = 78/97 (80%)
Query: 22 STLSESLLQVAHLEKDGRYLTIKDNQVVQLHPSTCLDHKPEWVVYNEFVLTTKNYIRTVT 81
+ L+ +QVAHLE+ G YLT+KDNQVV LHPS CLDHKPEWV+YNE+VLTT+N+IRTVT
Sbjct: 623 AMLAGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCLDHKPEWVIYNEYVLTTRNFIRTVT 682
Query: 82 DVKPEWLIKLAPQYYELQNFPQCEAKRQLEILQAKME 118
D++ EWL+ +A YY+L NFP CEAKR LE L K E
Sbjct: 683 DIRGEWLVDVAQHYYDLSNFPNCEAKRALEKLYKKRE 719
>sp|Q20875|DHX15_CAEEL Putative pre-mRNA-splicing factor ATP-dependent RNA helicase
F56D2.6 OS=Caenorhabditis elegans GN=F56D2.6 PE=2 SV=1
Length = 739
Score = 141 bits (356), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 63/97 (64%), Positives = 79/97 (81%), Gaps = 3/97 (3%)
Query: 29 LQVAHLEKDGRYLTIKDNQVVQLHPSTCLDHKPEWVVYNEFVLTTKNYIRTVTDVKPEWL 88
+QVAHLE+ G Y+T+KDNQ+V LHPST LDHKPEW +YNEFVLTTKN+IRTVTDV+PEWL
Sbjct: 643 MQVAHLERSGHYVTVKDNQLVNLHPSTVLDHKPEWALYNEFVLTTKNFIRTVTDVRPEWL 702
Query: 89 IKLAPQYYELQNFPQCEAKRQLEILQAKMETRQYQDG 125
+++APQYY+L NFP + KR+L + M+T Q G
Sbjct: 703 LQIAPQYYDLDNFPDGDTKRKLTTV---MQTLQRNAG 736
>sp|P53131|PRP43_YEAST Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=PRP43 PE=1 SV=1
Length = 767
Score = 111 bits (277), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 51/92 (55%), Positives = 68/92 (73%), Gaps = 1/92 (1%)
Query: 28 LLQVAHLEKDGR-YLTIKDNQVVQLHPSTCLDHKPEWVVYNEFVLTTKNYIRTVTDVKPE 86
+QVA + Y+T+KDNQ V +HPST L H EWV+YNEFVLT+KNYIRTVT V+PE
Sbjct: 657 FMQVAKKRSGAKGYITVKDNQDVLIHPSTVLGHDAEWVIYNEFVLTSKNYIRTVTSVRPE 716
Query: 87 WLIKLAPQYYELQNFPQCEAKRQLEILQAKME 118
WLI++AP YY+L NF + + K LE ++ K++
Sbjct: 717 WLIEIAPAYYDLSNFQKGDVKLSLERIKEKVD 748
>sp|O42945|DHX15_SCHPO Probable pre-mRNA-splicing factor ATP-dependent RNA helicase prp43
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=prp43 PE=3 SV=1
Length = 735
Score = 105 bits (261), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 52/91 (57%), Positives = 66/91 (72%), Gaps = 2/91 (2%)
Query: 13 NKNYSILFYSTL-SESLLQVAHLEKDGR-YLTIKDNQVVQLHPSTCLDHKPEWVVYNEFV 70
+KNY + L S +QVA +G+ Y+T+KDNQVV LHPS L PEWVVYNEFV
Sbjct: 619 DKNYYVNIRRALVSGFFMQVAKKSANGKNYVTMKDNQVVSLHPSCGLSVTPEWVVYNEFV 678
Query: 71 LTTKNYIRTVTDVKPEWLIKLAPQYYELQNF 101
LTTK++IR VT ++PEWLI+LAP YY+L +F
Sbjct: 679 LTTKSFIRNVTAIRPEWLIELAPNYYDLDDF 709
>sp|Q54NJ4|DHX15_DICDI Putative pre-mRNA-splicing factor ATP-dependent RNA helicase dhx15
OS=Dictyostelium discoideum GN=dhx15 PE=3 SV=1
Length = 727
Score = 94.0 bits (232), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 41/76 (53%), Positives = 57/76 (75%)
Query: 28 LLQVAHLEKDGRYLTIKDNQVVQLHPSTCLDHKPEWVVYNEFVLTTKNYIRTVTDVKPEW 87
+QVA EK Y T+ D Q V HPST L +PE+ +YNEFVLT++NYIRT+TDVK +W
Sbjct: 625 FMQVAKCEKKNIYFTLGDEQSVIFHPSTGLTRRPEFCIYNEFVLTSENYIRTITDVKFDW 684
Query: 88 LIKLAPQYYELQNFPQ 103
L++LAP Y++ ++FP+
Sbjct: 685 LLELAPSYFKQKSFPK 700
>sp|Q54MH3|DHX16_DICDI Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
OS=Dictyostelium discoideum GN=dhx16 PE=3 SV=1
Length = 1106
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 54/86 (62%), Gaps = 7/86 (8%)
Query: 32 AHLEKDGRYLTIKDNQVVQLHPSTCL-DHKPEWVVYNEFVLTTKNYIRTVTDVKPEWLIK 90
A LEK G + T K NQ VQ+HPS+CL P+WVVY+E VLTTK ++R + +++ WL +
Sbjct: 1019 AKLEKSGLFRTTKHNQSVQIHPSSCLFQSPPKWVVYHELVLTTKEFMRQIVEIQSSWLHE 1078
Query: 91 LAPQYY------ELQNFPQCEAKRQL 110
+AP Y + Q P+ K+Q+
Sbjct: 1079 IAPHIYKEKDVNDNQKLPKNIGKKQI 1104
>sp|Q09530|MOG5_CAEEL Probable pre-mRNA-splicing factor ATP-dependent RNA helicase mog-5
OS=Caenorhabditis elegans GN=mog-5 PE=1 SV=1
Length = 1200
Score = 74.3 bits (181), Expect = 2e-13, Method: Composition-based stats.
Identities = 29/60 (48%), Positives = 44/60 (73%), Gaps = 1/60 (1%)
Query: 40 YLTIKDNQVVQLHPST-CLDHKPEWVVYNEFVLTTKNYIRTVTDVKPEWLIKLAPQYYEL 98
Y T+ D Q V +HPS+ C +PEWVVY+E V+TTK Y+R VT + P+WL++ AP ++++
Sbjct: 1099 YRTLTDGQNVYIHPSSACFQQQPEWVVYHELVMTTKEYMREVTAIDPKWLVEFAPSFFKI 1158
>sp|A2A4P0|DHX8_MOUSE ATP-dependent RNA helicase DHX8 OS=Mus musculus GN=Dhx8 PE=2 SV=1
Length = 1244
Score = 72.4 bits (176), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 46/62 (74%), Gaps = 1/62 (1%)
Query: 40 YLTIKDNQVVQLHPSTCL-DHKPEWVVYNEFVLTTKNYIRTVTDVKPEWLIKLAPQYYEL 98
Y T+ D QVV +HPS+ L + +PEWVVY+E VLTTK Y+R VT + P WL++ AP ++++
Sbjct: 1148 YRTLIDQQVVYIHPSSALFNRQPEWVVYHELVLTTKEYMREVTTIDPRWLVEFAPAFFKV 1207
Query: 99 QN 100
+
Sbjct: 1208 SD 1209
>sp|Q14562|DHX8_HUMAN ATP-dependent RNA helicase DHX8 OS=Homo sapiens GN=DHX8 PE=1 SV=1
Length = 1220
Score = 72.4 bits (176), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 46/62 (74%), Gaps = 1/62 (1%)
Query: 40 YLTIKDNQVVQLHPSTCL-DHKPEWVVYNEFVLTTKNYIRTVTDVKPEWLIKLAPQYYEL 98
Y T+ D QVV +HPS+ L + +PEWVVY+E VLTTK Y+R VT + P WL++ AP ++++
Sbjct: 1124 YRTLIDQQVVYIHPSSALFNRQPEWVVYHELVLTTKEYMREVTTIDPRWLVEFAPAFFKV 1183
Query: 99 QN 100
+
Sbjct: 1184 SD 1185
>sp|Q10752|CDC28_SCHPO Pre-mRNA-splicing factor ATP-dependent RNA helicase-like protein
cdc28 OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) GN=cdc28 PE=3 SV=2
Length = 1055
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 52/73 (71%), Gaps = 2/73 (2%)
Query: 31 VAHLEKDG-RYLTIKDNQVVQLHPSTCL-DHKPEWVVYNEFVLTTKNYIRTVTDVKPEWL 88
A L++ G Y T+K NQ V +HPS+ + + KP+ ++Y E VLTTK Y R +T+++PEWL
Sbjct: 971 AARLDRSGDSYRTVKSNQTVYIHPSSSVAEKKPKVIIYFELVLTTKEYCRQITEIQPEWL 1030
Query: 89 IKLAPQYYELQNF 101
++++P Y++ +N
Sbjct: 1031 LEISPHYFKPENI 1043
>sp|Q38953|DHX8_ARATH Probable pre-mRNA-splicing factor ATP-dependent RNA helicase
OS=Arabidopsis thaliana GN=At3g26560 PE=1 SV=2
Length = 1168
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 62/98 (63%), Gaps = 2/98 (2%)
Query: 13 NKNYSILFYSTLSESLLQVAHLEKDGRYLTIKDNQVVQLHPSTCL-DHKPEWVVYNEFVL 71
KN++ + + + A + Y T+ +NQ V +HPS+ L +P+WV+Y++ V+
Sbjct: 1047 GKNFTKIRKAITAGFFFHGARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYHDLVM 1106
Query: 72 TTKNYIRTVTDVKPEWLIKLAPQYYELQNFPQCEAKRQ 109
TTK Y+R VT + P+WL++LAP+++++ + P +KR+
Sbjct: 1107 TTKEYMREVTVIDPKWLVELAPRFFKVSD-PTKMSKRK 1143
>sp|Q8BZS9|DHX32_MOUSE Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX32
OS=Mus musculus GN=Dhx32 PE=2 SV=2
Length = 744
Score = 68.9 bits (167), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 66/123 (53%), Gaps = 7/123 (5%)
Query: 1 MPYQEIPFGFIYNKNYSILFYSTLSESLLQVAH-LEKDGRYLTIKDNQVVQLHP--STCL 57
+PY E FG +N + + LS +Q+A ++ G YL + QV QLHP S +
Sbjct: 601 LPYAEPAFG--SKENGLNIKKALLSGYFMQIARDVDGSGNYLMLTHKQVAQLHPLSSYSI 658
Query: 58 DHK-PEWVVYNEFVLTTKNYIRTVTDVKPEWLIKLAPQYYELQNFPQCEAKRQLEILQAK 116
K PEWV++++F ++ NYIR + V PE ++L PQYY N P E+K L+
Sbjct: 659 TKKMPEWVLFHQFSISENNYIRVASAVSPELFMQLVPQYY-FSNLPPSESKDILQQAAGH 717
Query: 117 MET 119
+ T
Sbjct: 718 LPT 720
>sp|Q9H5Z1|DHX35_HUMAN Probable ATP-dependent RNA helicase DHX35 OS=Homo sapiens GN=DHX35
PE=1 SV=2
Length = 703
Score = 68.6 bits (166), Expect = 1e-11, Method: Composition-based stats.
Identities = 30/79 (37%), Positives = 48/79 (60%), Gaps = 2/79 (2%)
Query: 32 AHLEKDGRYLTIKDNQVVQLHPSTCL--DHKPEWVVYNEFVLTTKNYIRTVTDVKPEWLI 89
A G Y TI+D+ + +HP++ L + P WV+YNE + T+K Y+R VT ++ WL+
Sbjct: 619 ARFHSTGAYRTIRDDHELHIHPASVLYAEKPPRWVIYNEVIQTSKYYMRDVTAIESAWLL 678
Query: 90 KLAPQYYELQNFPQCEAKR 108
+LAP +Y+ +AKR
Sbjct: 679 ELAPHFYQQGTHLSLKAKR 697
>sp|Q7L7V1|DHX32_HUMAN Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX32
OS=Homo sapiens GN=DHX32 PE=1 SV=1
Length = 743
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 65/118 (55%), Gaps = 10/118 (8%)
Query: 1 MPYQEIPFGFIYNKNYSILFYSTLSESLLQVAH-LEKDGRYLTIKDNQVVQLHPST---C 56
+PY E FG +N + + LS +Q+A ++ G YL + QV QLHP +
Sbjct: 600 LPYAEPAFG--SKENTLNIKKALLSGYFMQIARDVDGSGNYLMLTHKQVAQLHPLSGYSI 657
Query: 57 LDHKPEWVVYNEFVLTTKNYIRTVTDVKPEWLIKLAPQYYELQNFPQCEAKRQLEILQ 114
PEWV++++F ++ NYIR +++ PE ++L PQYY N P E+K +ILQ
Sbjct: 658 TKKMPEWVLFHKFSISENNYIRITSEISPELFMQLVPQYY-FSNLPPSESK---DILQ 711
>sp|Q54F05|DHX8_DICDI ATP-dependent RNA helicase dhx8 OS=Dictyostelium discoideum GN=dhx8
PE=3 SV=1
Length = 1160
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 60/98 (61%), Gaps = 2/98 (2%)
Query: 13 NKNYSILFYSTLSESLLQVAHLEKDGRYLTIKDNQVVQLHPSTCL-DHKPEWVVYNEFVL 71
+NY+ + + S + + + Y T+ + Q V +HPS+ L + P+WV+Y+E V+
Sbjct: 1040 GRNYTKIQKAICSGFFANASKKDPNEGYKTLVEGQPVYIHPSSTLFNRNPDWVIYHELVM 1099
Query: 72 TTKNYIRTVTDVKPEWLIKLAPQYYELQNFPQCEAKRQ 109
TTK Y+R V + P+WL++LAP++++ + P +KR+
Sbjct: 1100 TTKEYMREVCTIDPKWLVELAPKFFKTSD-PNKISKRK 1136
>sp|Q5RBD4|DHX35_PONAB Probable ATP-dependent RNA helicase DHX35 OS=Pongo abelii GN=DHX35
PE=2 SV=1
Length = 720
Score = 67.0 bits (162), Expect = 4e-11, Method: Composition-based stats.
Identities = 27/68 (39%), Positives = 44/68 (64%), Gaps = 2/68 (2%)
Query: 32 AHLEKDGRYLTIKDNQVVQLHPSTCL--DHKPEWVVYNEFVLTTKNYIRTVTDVKPEWLI 89
A G Y TI+D+ + +HP++ L + P WV+YNE + T+K Y+R VT ++ WL+
Sbjct: 619 ARFHSTGAYRTIRDDHELHIHPASVLYAEKPPRWVIYNEVIQTSKYYMRDVTAIESAWLL 678
Query: 90 KLAPQYYE 97
+LAP +Y+
Sbjct: 679 ELAPHFYQ 686
>sp|Q03319|PRH1_SCHPO Probable ATP-dependent RNA helicase prh1 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=prh1 PE=3 SV=2
Length = 719
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Query: 15 NYSILFYSTLSESLLQVAHLEKDGRYLTIKDNQVVQLHPSTCL-DHKPEWVVYNEFVLTT 73
N L S LS + A L DG Y TI NQ + +HPS+ L K E ++Y+E V TT
Sbjct: 632 NSENLLLSFLSGYITNTALLHPDGSYRTIIGNQTISIHPSSSLFGKKVEAIMYHELVFTT 691
Query: 74 KNYIRTVTDVKPEWLIKLAPQY 95
K+Y+R V+ ++ WL +AP Y
Sbjct: 692 KSYVRGVSSIRSNWLNAVAPHY 713
>sp|O60231|DHX16_HUMAN Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
OS=Homo sapiens GN=DHX16 PE=1 SV=2
Length = 1041
Score = 66.6 bits (161), Expect = 4e-11, Method: Composition-based stats.
Identities = 30/80 (37%), Positives = 51/80 (63%), Gaps = 2/80 (2%)
Query: 30 QVAHLEKDGRYLTIKDNQVVQLHPSTCL-DHKPEWVVYNEFVLTTKNYIRTVTDVKPEWL 88
A L + G Y T+K Q V +HP++ L + +P W++Y+E VLTTK ++R V +++ WL
Sbjct: 950 HTARLTRSG-YRTVKQQQTVFIHPNSSLFEQQPRWLLYHELVLTTKEFMRQVLEIESSWL 1008
Query: 89 IKLAPQYYELQNFPQCEAKR 108
+++AP YY+ + AK+
Sbjct: 1009 LEVAPHYYKAKELEDPHAKK 1028
>sp|Q767K6|DHX16_PIG Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
OS=Sus scrofa GN=DHX16 PE=3 SV=1
Length = 1045
Score = 66.6 bits (161), Expect = 4e-11, Method: Composition-based stats.
Identities = 30/80 (37%), Positives = 51/80 (63%), Gaps = 2/80 (2%)
Query: 30 QVAHLEKDGRYLTIKDNQVVQLHPSTCL-DHKPEWVVYNEFVLTTKNYIRTVTDVKPEWL 88
A L + G Y T+K Q V +HP++ L + +P W++Y+E VLTTK ++R V +++ WL
Sbjct: 954 HTARLTRSG-YRTVKQQQTVFIHPNSSLFEEQPRWLLYHELVLTTKEFMRQVLEIESSWL 1012
Query: 89 IKLAPQYYELQNFPQCEAKR 108
+++AP YY+ + AK+
Sbjct: 1013 LEVAPHYYKAKELEDPHAKK 1032
>sp|Q7YR39|DHX16_PANTR Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
OS=Pan troglodytes GN=DHX16 PE=3 SV=1
Length = 1044
Score = 66.6 bits (161), Expect = 4e-11, Method: Composition-based stats.
Identities = 30/80 (37%), Positives = 51/80 (63%), Gaps = 2/80 (2%)
Query: 30 QVAHLEKDGRYLTIKDNQVVQLHPSTCL-DHKPEWVVYNEFVLTTKNYIRTVTDVKPEWL 88
A L + G Y T+K Q V +HP++ L + +P W++Y+E VLTTK ++R V +++ WL
Sbjct: 953 HTARLTRSG-YRTVKQQQTVFIHPNSSLFEQQPRWLLYHELVLTTKEFMRQVLEIESSWL 1011
Query: 89 IKLAPQYYELQNFPQCEAKR 108
+++AP YY+ + AK+
Sbjct: 1012 LEVAPHYYKAKELEDPHAKK 1031
>sp|O45244|DHX16_CAEEL Probable pre-mRNA-splicing factor ATP-dependent RNA helicase mog-4
OS=Caenorhabditis elegans GN=mog-4 PE=1 SV=2
Length = 1008
Score = 65.1 bits (157), Expect = 1e-10, Method: Composition-based stats.
Identities = 26/68 (38%), Positives = 44/68 (64%), Gaps = 1/68 (1%)
Query: 31 VAHLEKDGRYLTIKDNQVVQLHPSTCL-DHKPEWVVYNEFVLTTKNYIRTVTDVKPEWLI 89
V+ L+ G Y T+K HP++CL + P WVVY E V T+K ++R +++++ WL+
Sbjct: 916 VSKLDNTGHYKTVKHKHTTHPHPNSCLFEETPRWVVYFELVFTSKEFMREMSEIESGWLL 975
Query: 90 KLAPQYYE 97
++AP YY+
Sbjct: 976 EVAPHYYK 983
>sp|O42643|PRP22_SCHPO Pre-mRNA-splicing factor ATP-dependent RNA helicase prp22
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=prp22 PE=1 SV=1
Length = 1168
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 52/79 (65%), Gaps = 2/79 (2%)
Query: 37 DGRYLTIKDNQVVQLHPSTCLDHKP-EWVVYNEFVLTTKNYIRTVTDVKPEWLIKLAPQY 95
+G Y TI +N V +HPS L K EWV+Y+E + T+K Y+ TV+ V P+WL+++AP +
Sbjct: 1068 EGCYKTIVENAPVYMHPSGVLFGKAAEWVIYHELIQTSKEYMHTVSTVNPKWLVEVAPTF 1127
Query: 96 YELQNFPQ-CEAKRQLEIL 113
++ N Q + K+ L++L
Sbjct: 1128 FKFANANQVSKTKKNLKVL 1146
>sp|Q92620|PRP16_HUMAN Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 OS=Homo
sapiens GN=DHX38 PE=1 SV=2
Length = 1227
Score = 60.8 bits (146), Expect = 2e-09, Method: Composition-based stats.
Identities = 28/73 (38%), Positives = 45/73 (61%), Gaps = 3/73 (4%)
Query: 30 QVAHLEKDGRYLTIKDNQVVQLHPSTCL---DHKPEWVVYNEFVLTTKNYIRTVTDVKPE 86
Q A L+ G Y+ I+ LHP++ L + P+++VY+E V+TTK Y++ VT V E
Sbjct: 1080 QAAKLKGIGEYVNIRTGMPCHLHPTSSLFGMGYTPDYIVYHELVMTTKEYMQCVTAVDGE 1139
Query: 87 WLIKLAPQYYELQ 99
WL +L P +Y ++
Sbjct: 1140 WLAELGPMFYSVK 1152
>sp|Q17R09|PRP16_BOVIN Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 OS=Bos
taurus GN=DHX38 PE=2 SV=1
Length = 1227
Score = 60.8 bits (146), Expect = 2e-09, Method: Composition-based stats.
Identities = 28/73 (38%), Positives = 45/73 (61%), Gaps = 3/73 (4%)
Query: 30 QVAHLEKDGRYLTIKDNQVVQLHPSTCL---DHKPEWVVYNEFVLTTKNYIRTVTDVKPE 86
Q A L+ G Y+ I+ LHP++ L + P+++VY+E V+TTK Y++ VT V E
Sbjct: 1080 QAAKLKGIGEYVNIRTGMPCHLHPTSSLFGMGYTPDYIVYHELVMTTKEYMQCVTAVDGE 1139
Query: 87 WLIKLAPQYYELQ 99
WL +L P +Y ++
Sbjct: 1140 WLAELGPMFYSVK 1152
>sp|Q5XH12|DHX32_XENLA Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX32
OS=Xenopus laevis GN=dhx32 PE=2 SV=1
Length = 748
Score = 59.7 bits (143), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 62/114 (54%), Gaps = 8/114 (7%)
Query: 5 EIPF---GFIYNKNYSILFYSTLSESLLQVAH-LEKDGRYLTIKDNQVVQLHPST--CLD 58
E+P F ++N + + S LS +Q+A ++ G Y+ + QV QLHP + C
Sbjct: 601 ELPLTGPAFGSDENVTNIKKSLLSGYFMQIARDVDGLGNYIMLTHKQVGQLHPDSGFCNS 660
Query: 59 HK-PEWVVYNEFVLTTKNYIRTVTDVKPEWLIKLAPQYYELQNFPQCEAKRQLE 111
K PEWV+++EF ++ ++ IR V+++ P ++ P YY N P E K L+
Sbjct: 661 AKVPEWVLFHEFSVSERSCIRIVSEISPNLFMEFVPPYY-FSNLPPSETKDLLQ 713
>sp|Q9H6R0|DHX33_HUMAN Putative ATP-dependent RNA helicase DHX33 OS=Homo sapiens GN=DHX33
PE=1 SV=2
Length = 707
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 45/76 (59%), Gaps = 2/76 (2%)
Query: 24 LSESL-LQVAHLEKDGRYLTIKDNQVVQLHPSTCLDH-KPEWVVYNEFVLTTKNYIRTVT 81
L+ SL + A L+ DG Y T +Q V +HPS+ L H KP VVY E + T K Y+R +
Sbjct: 624 LAHSLFMSTAELQPDGTYATTDTHQPVAIHPSSVLFHCKPACVVYTELLYTNKCYMRDLC 683
Query: 82 DVKPEWLIKLAPQYYE 97
+ +WL + AP+Y+
Sbjct: 684 VIDAQWLYEAAPEYFR 699
>sp|P34498|MOG1_CAEEL Probable pre-mRNA-splicing factor ATP-dependent RNA helicase mog-1
OS=Caenorhabditis elegans GN=mog-1 PE=1 SV=2
Length = 1131
Score = 57.8 bits (138), Expect = 2e-08, Method: Composition-based stats.
Identities = 36/130 (27%), Positives = 63/130 (48%), Gaps = 10/130 (7%)
Query: 4 QEIPFGFIYN-KNYSILFYSTLSESLLQVAHLEKDGRYLTIKDNQVVQLHPSTCL---DH 59
Q++ I N + I+ S A L+ G Y+ ++ LHP++ L
Sbjct: 963 QDLKLPLISNGSEWDIVRKCICSAYFHNAARLKGIGEYVNVRTGIPCFLHPTSALFGMGF 1022
Query: 60 KPEWVVYNEFVLTTKNYIRTVTDVKPEWLIKLAPQYYELQNFPQC------EAKRQLEIL 113
P++VVY+E ++T K Y++ VT V WL +L P +Y ++ Q E+ R +E +
Sbjct: 1023 MPDYVVYHELIMTAKEYMQCVTAVDAIWLAELGPMFYSIKESKQSRKELKMESVRTVETM 1082
Query: 114 QAKMETRQYQ 123
+A+M Q +
Sbjct: 1083 EAEMREAQKE 1092
>sp|Q80VY9|DHX33_MOUSE Putative ATP-dependent RNA helicase DHX33 OS=Mus musculus GN=Dhx33
PE=1 SV=1
Length = 698
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 29 LQVAHLEKDGRYLTIKDNQVVQLHPSTCLDH-KPEWVVYNEFVLTTKNYIRTVTDVKPEW 87
+ A L+ DG Y T +Q V +HPS+ L H KP VVY + T K Y+R + V EW
Sbjct: 621 MNTAELQTDGTYATTDTHQPVAIHPSSVLFHCKPACVVYTSLLYTNKCYMRDLCVVDAEW 680
Query: 88 LIKLAPQYYE 97
L + AP Y+
Sbjct: 681 LYEAAPDYFR 690
>sp|Q3ZBE0|DQX1_BOVIN ATP-dependent RNA helicase DQX1 OS=Bos taurus GN=DQX1 PE=2 SV=1
Length = 719
Score = 57.0 bits (136), Expect = 4e-08, Method: Composition-based stats.
Identities = 36/121 (29%), Positives = 62/121 (51%), Gaps = 10/121 (8%)
Query: 1 MPYQEIPFGFIYNKNYSILFYSTLSESLLQVAH-LEKDGRYLTIKDNQVVQLHPSTCLDH 59
+P + FG +N L + +S L+VA + G YL + V QL P+ C
Sbjct: 577 LPLSQPAFG--SERNRRDLQKALVSGYFLKVARDTDGTGNYLLLTHKHVAQLSPNCCYRS 634
Query: 60 K------PEWVVYNEFVLTTKNYIRTVTDVKPEWLIKLAPQYYELQNFPQCEAKRQLEIL 113
+ P WV+Y+ F ++ N + V++++P+ L++LAP Y+ L N P E++ L L
Sbjct: 635 RRAPARPPLWVLYHSFSISKDNCLSIVSEIQPQMLVELAPPYF-LSNLPPSESRDFLNQL 693
Query: 114 Q 114
+
Sbjct: 694 R 694
>sp|Q924H9|DQX1_MOUSE ATP-dependent RNA helicase DQX1 OS=Mus musculus GN=Dqx1 PE=2 SV=1
Length = 718
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 37/121 (30%), Positives = 61/121 (50%), Gaps = 10/121 (8%)
Query: 1 MPYQEIPFGFIYNKNYSILFYSTLSESLLQVAH-LEKDGRYLTIKDNQVVQLHPSTCLDH 59
+P + FG +N L + LS L+VA + G YL + V QL P +
Sbjct: 575 LPLSQPAFG--SEQNRRDLQKALLSGYFLKVARDTDGTGNYLLLTHKHVAQLSPYCSYRN 632
Query: 60 K------PEWVVYNEFVLTTKNYIRTVTDVKPEWLIKLAPQYYELQNFPQCEAKRQLEIL 113
+ P WV+Y+ F ++ N + V++++PE L++LAP Y+ L N P E++ L L
Sbjct: 633 RRTPAQPPTWVLYHSFSISKDNCLCIVSEIQPEMLVELAPPYF-LSNLPPSESRDLLNQL 691
Query: 114 Q 114
+
Sbjct: 692 R 692
>sp|P24384|PRP22_YEAST Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP22
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=PRP22 PE=1 SV=1
Length = 1145
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 55/91 (60%), Gaps = 2/91 (2%)
Query: 24 LSESLLQVAHLEKDGRYLTIKDNQVVQLHPSTCLDHKP-EWVVYNEFVLTTKNYIRTVTD 82
+S + A + Y TI V +HPS+ L K E+V+Y+ VLT++ Y+ VT
Sbjct: 1026 VSGFFMNAAKRDSQVGYKTINGGTEVGIHPSSSLYGKEYEYVMYHSIVLTSREYMSQVTS 1085
Query: 83 VKPEWLIKLAPQYYELQNFPQCEAKRQLEIL 113
++P+WL+++AP +Y+ + + +++++ +I+
Sbjct: 1086 IEPQWLLEVAPHFYKAGD-AESQSRKKAKII 1115
>sp|Q9BKQ8|DHX35_CAEEL Probable ATP-dependent RNA helicase DHX35 homolog OS=Caenorhabditis
elegans GN=Y67D2.6 PE=3 SV=1
Length = 732
Score = 53.9 bits (128), Expect = 3e-07, Method: Composition-based stats.
Identities = 27/82 (32%), Positives = 46/82 (56%), Gaps = 6/82 (7%)
Query: 30 QVAHLEKDGRYLTIKDNQVVQLHPSTCLDHK---PEWVVYNEFVLTTKNYIRTVTDVKPE 86
Q A G+Y+T+K++ ++ + + K P+WV++ E + ++ IR VT ++PE
Sbjct: 639 QAAQYHYTGKYMTVKESFPFNMYKGSSIMFKKDYPKWVIFTEVM---QDSIRDVTVIEPE 695
Query: 87 WLIKLAPQYYELQNFPQCEAKR 108
WL +LAP YYE + KR
Sbjct: 696 WLYELAPHYYEFGTEGELAEKR 717
>sp|Q8TE96|DQX1_HUMAN ATP-dependent RNA helicase DQX1 OS=Homo sapiens GN=DQX1 PE=2 SV=2
Length = 717
Score = 53.5 bits (127), Expect = 4e-07, Method: Composition-based stats.
Identities = 36/123 (29%), Positives = 60/123 (48%), Gaps = 11/123 (8%)
Query: 5 EIPF---GFIYNKNYSILFYSTLSESLLQVAH-LEKDGRYLTIKDNQVVQLHPSTCLDHK 60
E+P F +N L + +S L+VA + G YL + V QL C +
Sbjct: 574 ELPLSLPAFGSEQNRRDLQKALVSGYFLKVARDTDGTGNYLLLTHKHVAQLSSYCCYRSR 633
Query: 61 ------PEWVVYNEFVLTTKNYIRTVTDVKPEWLIKLAPQYYELQNFPQCEAKRQLEILQ 114
P WV+Y+ F ++ N + V++++P+ L++LAP Y+ L N P E++ L L+
Sbjct: 634 RAPARPPPWVLYHNFTISKDNCLSIVSEIQPQMLVELAPPYF-LSNLPPSESRDLLNQLR 692
Query: 115 AKM 117
M
Sbjct: 693 EGM 695
>sp|P15938|PRP16_YEAST Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=PRP16 PE=1 SV=2
Length = 1071
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 51/99 (51%), Gaps = 4/99 (4%)
Query: 4 QEIPFGFIYNKNYSILFYSTLSESLLQVAHLEKDGRYLTIKDNQVVQLHPSTCL---DHK 60
Q+IP K++ I+ S Q A + Y+ +K VQLHP++ L
Sbjct: 889 QKIPV-ISSGKDWDIIKKCICSGFAHQAAKITGLRNYVHLKTGVSVQLHPTSALHGLGDL 947
Query: 61 PEWVVYNEFVLTTKNYIRTVTDVKPEWLIKLAPQYYELQ 99
P +VVY+E ++T+K YI VT V P WL++ Y+++
Sbjct: 948 PPYVVYHELLMTSKEYICCVTSVDPFWLMEYGGLLYDIK 986
>sp|Q9P774|PRP16_SCHPO Pre-mRNA-splicing factor ATP-dependent RNA helicase prp16
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=prp16 PE=3 SV=2
Length = 1173
Score = 48.5 bits (114), Expect = 1e-05, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Query: 30 QVAHLEKDGRYLTIKDNQVVQLHPSTCL---DHKPEWVVYNEFVLTTKNYIRTVTDVKPE 86
Q A + G Y+ ++ LH ++ L + P++V+Y+E VLT+K Y+ VT V P
Sbjct: 1039 QAACAKGIGEYVHLRSGMPCHLHVTSSLYGLGYLPDYVIYHELVLTSKEYMNIVTSVDPY 1098
Query: 87 WLIKLAPQYYELQ 99
WL + YY ++
Sbjct: 1099 WLAEFGGVYYSVK 1111
>sp|Q5XI69|DHX40_RAT Probable ATP-dependent RNA helicase DHX40 OS=Rattus norvegicus
GN=Dhx40 PE=2 SV=1
Length = 779
Score = 47.4 bits (111), Expect = 2e-05, Method: Composition-based stats.
Identities = 21/53 (39%), Positives = 35/53 (66%), Gaps = 3/53 (5%)
Query: 49 VQLHPSTCL---DHKPEWVVYNEFVLTTKNYIRTVTDVKPEWLIKLAPQYYEL 98
V +HPS+ L + K EW++++E ++TTK Y R V ++ EW+ L P+ +EL
Sbjct: 650 VHIHPSSALHEQETKLEWIIFHEVLVTTKVYARIVCPIRYEWVRDLLPKLHEL 702
>sp|Q6PE54|DHX40_MOUSE Probable ATP-dependent RNA helicase DHX40 OS=Mus musculus GN=Dhx40
PE=2 SV=1
Length = 779
Score = 47.4 bits (111), Expect = 2e-05, Method: Composition-based stats.
Identities = 21/53 (39%), Positives = 35/53 (66%), Gaps = 3/53 (5%)
Query: 49 VQLHPSTCL---DHKPEWVVYNEFVLTTKNYIRTVTDVKPEWLIKLAPQYYEL 98
V +HPS+ L + K EW++++E ++TTK Y R V ++ EW+ L P+ +EL
Sbjct: 650 VHIHPSSALHEQETKLEWIIFHEVLVTTKVYARIVCPIRYEWVRDLLPKLHEL 702
>sp|Q5R864|DHX40_PONAB Probable ATP-dependent RNA helicase DHX40 OS=Pongo abelii GN=DHX40
PE=2 SV=1
Length = 779
Score = 46.6 bits (109), Expect = 4e-05, Method: Composition-based stats.
Identities = 21/53 (39%), Positives = 34/53 (64%), Gaps = 3/53 (5%)
Query: 49 VQLHPSTCL---DHKPEWVVYNEFVLTTKNYIRTVTDVKPEWLIKLAPQYYEL 98
V +HPS+ L + K EW+V++E ++TTK Y R V ++ EW+ L P+ +E
Sbjct: 650 VHIHPSSALHEQETKLEWIVFHEVLVTTKVYARIVCPIRYEWVRDLLPKLHEF 702
>sp|Q8IX18|DHX40_HUMAN Probable ATP-dependent RNA helicase DHX40 OS=Homo sapiens GN=DHX40
PE=1 SV=2
Length = 779
Score = 46.2 bits (108), Expect = 6e-05, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 34/53 (64%), Gaps = 3/53 (5%)
Query: 49 VQLHPSTCL---DHKPEWVVYNEFVLTTKNYIRTVTDVKPEWLIKLAPQYYEL 98
V +HPS+ L + K EW++++E ++TTK Y R V ++ EW+ L P+ +E
Sbjct: 650 VHIHPSSALHEQETKLEWIIFHEVLVTTKVYARIVCPIRYEWVRDLLPKLHEF 702
>sp|Q8IY37|DHX37_HUMAN Probable ATP-dependent RNA helicase DHX37 OS=Homo sapiens GN=DHX37
PE=1 SV=1
Length = 1157
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 22/48 (45%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 49 VQLHPSTCL-DHKPEWVVYNEFVLTTKNYIRTVTDVKPEWLIKLAPQY 95
V +HPS+ L PE+VVY E V TTK Y++ V+ V+ +W+ L P Y
Sbjct: 964 VFIHPSSVLFKELPEFVVYQEIVETTKMYMKGVSSVEVQWIPALLPSY 1011
>sp|P36009|DHR2_YEAST Probable ATP-dependent RNA helicase DHR2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=DHR2 PE=1
SV=1
Length = 735
Score = 39.3 bits (90), Expect = 0.008, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 37 DGRYLTIKDNQVVQLHPSTCL--DHKPEWVVYNEFVLTTKNYIRTVTDVKPEWL 88
D Y T+ + + +HPS+ L + ++Y E+V TTK Y R V+ ++ WL
Sbjct: 663 DRSYRTVSTGEPISIHPSSMLFMNKSCPGIMYTEYVFTTKGYARNVSRIELSWL 716
>sp|O46072|KZ_DROME Probable ATP-dependent RNA helicase kurz OS=Drosophila melanogaster
GN=kz PE=1 SV=1
Length = 1192
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 6/49 (12%)
Query: 51 LHPSTCLDHK-PEWVVYNEF-----VLTTKNYIRTVTDVKPEWLIKLAP 93
LH S+ L K PEWV+Y E +TK +IR +T ++PEWL+ P
Sbjct: 991 LHVSSVLRQKAPEWVIYQEAYELQNGDSTKMFIRGITAIEPEWLLLYVP 1039
>sp|P0CE10|Y4102_ARATH Putative uncharacterized protein At4g01020, chloroplastic
OS=Arabidopsis thaliana GN=At4g01020 PE=4 SV=1
Length = 1787
Score = 38.9 bits (89), Expect = 0.010, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 4/88 (4%)
Query: 9 GFIYNKNYSILFYSTLSESLLQVAHLEKDGRYLTIKDNQVVQLHPSTCL---DHKPEWVV 65
G ++K ++ ++L+E++ ++ G + + QV QLHPS L KP WVV
Sbjct: 850 GTKHDKYLKMVILASLAENVAMYTGYDQLGYEVALTSQQV-QLHPSCSLLAFGQKPSWVV 908
Query: 66 YNEFVLTTKNYIRTVTDVKPEWLIKLAP 93
+ E + Y+ VT E L L P
Sbjct: 909 FGELLSIVDQYLVCVTAFDFEALYMLDP 936
>sp|P45018|HRPA_HAEIN ATP-dependent RNA helicase HrpA homolog OS=Haemophilus influenzae
(strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=hrpA PE=3
SV=2
Length = 1304
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Query: 12 YNKNYSILFYSTLSESLLQVAHLEKDGRYLTIKDNQVVQLHPSTCLDHKPEWVVYNEFVL 71
Y + ++ L LS L+ A ++ YL ++ S +P+WV+ E V
Sbjct: 625 YQQIHTALLSGLLSHIGLKEAEKQQ---YLGARNAHFAIFPNSVLFKKQPKWVMAAELVE 681
Query: 72 TTKNYIRTVTDVKPEWLIKLA 92
T+K + R V +++PEW+ LA
Sbjct: 682 TSKLWGRMVAEIEPEWIEPLA 702
>sp|Q9HE06|YK99_SCHPO Putative pre-mRNA-splicing factor ATP-dependent RNA helicase
C20H4.09 OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) GN=SPAC20H4.09 PE=3 SV=1
Length = 647
Score = 37.7 bits (86), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 30 QVAHLEKDGRYLTIKDNQVVQLHPSTCLDHKPEWVVYNEFVLT-TKNYIRTVTDVKPEWL 88
VAHL+ DG Y TI QV S + K W++Y+ V + T+ +++ ++ ++ WL
Sbjct: 580 NVAHLQNDGSYKTIGGKQVWLDSSSVLHEKKTPWIMYSSAVESETQIFVKNISKIESFWL 639
Query: 89 IK 90
K
Sbjct: 640 DK 641
>sp|P20095|PRP2_YEAST Pre-mRNA-splicing factor ATP-dependent RNA helicase-like protein
PRP2 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=PRP2 PE=1 SV=1
Length = 876
Score = 36.6 bits (83), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 35/58 (60%), Gaps = 9/58 (15%)
Query: 49 VQLHPSTCL--DHK------PEWVVYNEFVLTTKNYIRTVTDV-KPEWLIKLAPQYYE 97
V +HP++ L +HK ++V+Y + +LT+K +IR + K EWLI + PQ ++
Sbjct: 807 VSVHPTSILFVNHKEKAQRPSKYVLYQQLMLTSKEFIRDCLVIPKEEWLIDMVPQIFK 864
>sp|P34305|RHA2_CAEEL Putative ATP-dependent RNA helicase rha-2 OS=Caenorhabditis elegans
GN=rha-2 PE=3 SV=2
Length = 1148
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 54 STCLDHKPEWVVYNEFV-LTTKNYIRTVTDVKPEWLIKLAPQY 95
S +PE+V+Y E V + K + +V V EWL +LA Y
Sbjct: 948 SVVFTEEPEFVIYQELVQVNEKKLMTSVCAVDKEWLSRLAESY 990
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.137 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,362,772
Number of Sequences: 539616
Number of extensions: 1747955
Number of successful extensions: 4698
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 4617
Number of HSP's gapped (non-prelim): 64
length of query: 126
length of database: 191,569,459
effective HSP length: 92
effective length of query: 34
effective length of database: 141,924,787
effective search space: 4825442758
effective search space used: 4825442758
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)