Query psy2073
Match_columns 126
No_of_seqs 107 out of 1054
Neff 6.6
Searched_HMMs 46136
Date Fri Aug 16 23:37:52 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2073.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2073hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0925|consensus 100.0 2.6E-29 5.7E-34 210.3 10.9 111 1-113 573-683 (699)
2 PF07717 OB_NTP_bind: Oligonuc 99.9 7.3E-28 1.6E-32 166.5 7.3 82 14-95 32-114 (114)
3 KOG0922|consensus 99.9 2.6E-25 5.5E-30 190.5 5.6 90 10-100 579-670 (674)
4 KOG0924|consensus 99.9 4.4E-24 9.6E-29 184.1 4.6 94 5-100 881-976 (1042)
5 PRK11131 ATP-dependent RNA hel 99.8 4.5E-21 9.7E-26 175.1 7.7 92 12-104 611-704 (1294)
6 KOG0923|consensus 99.8 5.6E-21 1.2E-25 164.5 3.7 95 13-107 798-893 (902)
7 TIGR01967 DEAH_box_HrpA ATP-de 99.7 6.1E-17 1.3E-21 148.4 8.0 86 13-99 603-689 (1283)
8 KOG0926|consensus 99.5 1E-14 2.2E-19 128.3 3.2 94 7-100 931-1026(1172)
9 PRK11664 ATP-dependent RNA hel 98.5 2.6E-07 5.5E-12 82.8 7.0 82 15-97 487-571 (812)
10 KOG0920|consensus 98.5 2.1E-07 4.6E-12 83.9 5.9 84 12-96 754-848 (924)
11 COG1643 HrpA HrpA-like helicas 98.3 9.8E-08 2.1E-12 85.6 -1.5 79 15-93 615-707 (845)
12 TIGR01970 DEAH_box_HrpB ATP-de 96.4 0.0069 1.5E-07 54.8 5.9 75 19-96 498-577 (819)
13 KOG0921|consensus 95.4 0.019 4.2E-07 52.7 4.0 83 13-96 982-1072(1282)
14 PF08479 POTRA_2: POTRA domain 35.1 64 0.0014 20.0 3.3 48 74-126 5-52 (76)
15 CHL00145 psaD photosystem I su 28.3 1.1E+02 0.0025 22.0 3.9 54 3-56 36-101 (139)
16 KOG3170|consensus 27.3 64 0.0014 25.2 2.7 72 20-94 125-202 (240)
17 PRK06630 hypothetical protein; 26.0 35 0.00075 23.4 0.9 23 58-88 35-57 (99)
18 KOG1881|consensus 22.5 1.1E+02 0.0023 28.2 3.5 36 63-99 221-256 (793)
19 cd00929 Cyt_c_Oxidase_VIIc Cyt 21.4 56 0.0012 19.2 1.1 13 2-14 7-19 (46)
20 PF05820 DUF845: Baculovirus p 20.8 65 0.0014 22.8 1.5 14 44-57 55-68 (119)
No 1
>KOG0925|consensus
Probab=99.96 E-value=2.6e-29 Score=210.27 Aligned_cols=111 Identities=66% Similarity=1.110 Sum_probs=106.9
Q ss_pred CCCCCCCccCCCccCHHHHHHHHHHhhhhcceeeCCCCCeEeeecCcEEEEcCCCCCCCCCceEEEeeecccccceeeec
Q psy2073 1 MPYQEIPFGFIYNKNYSILFYSTLSESLLQVAHLEKDGRYLTIKDNQVVQLHPSTCLDHKPEWVVYNEFVLTTKNYIRTV 80 (126)
Q Consensus 1 ~~~~~~~f~~~~~~~~~~I~k~l~sG~~~nvA~~~~~~~Y~~~~~~~~v~IHPsS~L~~~p~wIvy~El~~tsk~y~r~v 80 (126)
.|...++|+ +.+++.+|||||++|||++||+...+|+|.++++++.|++||+++|..+|+||+|+|.+.|+++|||.|
T Consensus 573 L~~~st~F~--S~~y~~nirKALvsgyFmqVA~~~~~~~Ylt~kdnqvvqLhps~~l~~~PeWVlyneFvlt~~N~ir~v 650 (699)
T KOG0925|consen 573 LPLCSTDFG--SRDYYVNIRKALVSGYFMQVAHLERGGHYLTVKDNQVVQLHPSTCLDHKPEWVLYNEFVLTTKNFIRTV 650 (699)
T ss_pred CcccCCCCC--ChhHHHHHHHHHHHHHHHHHHhhccCCceEEEecCceEEeccccccCCCCCeEEEeeEEeeccceeeee
Confidence 477889998 889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeChhHHHhhcccccccCCCCchHHHHHHHHH
Q psy2073 81 TDVKPEWLIKLAPQYYELQNFPQCEAKRQLEIL 113 (126)
Q Consensus 81 s~I~~~WL~~~~p~~~~~~~~~~~~~~~~~~~~ 113 (126)
|.|.|+||.++||+||+.++|+++++|+.|+++
T Consensus 651 t~I~pewlv~laP~YydlsNfp~~e~k~~L~~~ 683 (699)
T KOG0925|consen 651 TDIRPEWLVELAPQYYDLSNFPPSEAKRALEQL 683 (699)
T ss_pred cccCHHHHHHhchhhcccccCCchHHHHHHHHH
Confidence 999999999999999999999999999999964
No 2
>PF07717 OB_NTP_bind: Oligonucleotide/oligosaccharide-binding (OB)-fold; InterPro: IPR011709 This domain is found towards the C terminus of the DEAD-box helicases (IPR011545 from INTERPRO). In these helicases it appears to be always found in association with IPR007502 from INTERPRO. ; PDB: 3I4U_A 2XAU_B 3KX2_B.
Probab=99.95 E-value=7.3e-28 Score=166.47 Aligned_cols=82 Identities=38% Similarity=0.737 Sum_probs=72.1
Q ss_pred cCHHHHHHHHHHhhhhcceeeCCCCCeEeeecCcEEEEcCCCCC-CCCCceEEEeeecccccceeeecceeChhHHHhhc
Q psy2073 14 KNYSILFYSTLSESLLQVAHLEKDGRYLTIKDNQVVQLHPSTCL-DHKPEWVVYNEFVLTTKNYIRTVTDVKPEWLIKLA 92 (126)
Q Consensus 14 ~~~~~I~k~l~sG~~~nvA~~~~~~~Y~~~~~~~~v~IHPsS~L-~~~p~wIvy~El~~tsk~y~r~vs~I~~~WL~~~~ 92 (126)
.+++.|++|||+||++|||++.+++.|+++.++..|+|||+|+| +.+|+||||+|++.|+|.|||+||+|+|+||.++|
T Consensus 32 ~~~~~i~~~l~aG~~~nvA~~~~~~~y~~~~~~~~v~iHPsS~l~~~~p~~vvy~e~~~t~k~y~~~~t~I~~~wl~~~~ 111 (114)
T PF07717_consen 32 DQWELIRAALCAGFYPNVARRDNKGSYKTLSNGQPVFIHPSSVLFKKPPKWVVYHELVRTSKPYMRDVTAISPEWLLLFA 111 (114)
T ss_dssp THCHHHHHHHHHHHCCCEEEE-TTSSEEETTTG-EEEE-TTSTTTTTT-SEEEEEEEEESSSEEEEEEEE--HHHHHHH-
T ss_pred ccHHHHHHHHHHhhhhheEEeCCCCCEEEecCCCEEEEecCccccccccccchhhhheecCCcEEEECcCCCHHHHHHHc
Confidence 67899999999999999999999999999988889999999999 99999999999999999999999999999999999
Q ss_pred ccc
Q psy2073 93 PQY 95 (126)
Q Consensus 93 p~~ 95 (126)
|++
T Consensus 112 ~~~ 114 (114)
T PF07717_consen 112 PHY 114 (114)
T ss_dssp TTT
T ss_pred ccC
Confidence 985
No 3
>KOG0922|consensus
Probab=99.91 E-value=2.6e-25 Score=190.51 Aligned_cols=90 Identities=38% Similarity=0.716 Sum_probs=84.6
Q ss_pred CCCccCHHHHHHHHHHhhhhcceeeC-CCCCeEeeecCcEEEEcCCCCC-CCCCceEEEeeecccccceeeecceeChhH
Q psy2073 10 FIYNKNYSILFYSTLSESLLQVAHLE-KDGRYLTIKDNQVVQLHPSTCL-DHKPEWVVYNEFVLTTKNYIRTVTDVKPEW 87 (126)
Q Consensus 10 ~~~~~~~~~I~k~l~sG~~~nvA~~~-~~~~Y~~~~~~~~v~IHPsS~L-~~~p~wIvy~El~~tsk~y~r~vs~I~~~W 87 (126)
.++..|.+.|++|||+|||.|+|+++ ++| |+++.+++.|+|||||+| ..+|+||||+|+++|+|.|||+||.|+++|
T Consensus 579 ~s~~~d~~~i~k~l~aGff~N~A~~~~~~~-Yrti~~~~~v~IHPSS~l~~~~p~~viy~el~~Ttk~Y~r~Vt~i~~~w 657 (674)
T KOG0922|consen 579 SSCGGDMEKIRKCLCAGFFRNVAERDYQDG-YRTIRGGQPVYIHPSSVLFRRKPEWVIYHELLQTTKEYMRNVTAIDPEW 657 (674)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHhhcCCC-eEEccCCcEEEEechHHhhcCCCCEEEEEEEeecchHhHhheeecCHHH
Confidence 57889999999999999999999998 566 999999999999999999 778999999999999999999999999999
Q ss_pred HHhhcccccccCC
Q psy2073 88 LIKLAPQYYELQN 100 (126)
Q Consensus 88 L~~~~p~~~~~~~ 100 (126)
|.++||++++...
T Consensus 658 L~e~ap~~~~~~~ 670 (674)
T KOG0922|consen 658 LLELAPHFFKQSD 670 (674)
T ss_pred HHHhCchHhhccc
Confidence 9999999987654
No 4
>KOG0924|consensus
Probab=99.89 E-value=4.4e-24 Score=184.11 Aligned_cols=94 Identities=32% Similarity=0.671 Sum_probs=87.1
Q ss_pred CCCccCCCccCHHHHHHHHHHhhhhcceeeCCCCCeEeeecCcEEEEcCCCCC-C-CCCceEEEeeecccccceeeecce
Q psy2073 5 EIPFGFIYNKNYSILFYSTLSESLLQVAHLEKDGRYLTIKDNQVVQLHPSTCL-D-HKPEWVVYNEFVLTTKNYIRTVTD 82 (126)
Q Consensus 5 ~~~f~~~~~~~~~~I~k~l~sG~~~nvA~~~~~~~Y~~~~~~~~v~IHPsS~L-~-~~p~wIvy~El~~tsk~y~r~vs~ 82 (126)
.+|.. |..+|+.|++|||+|||.|+|++.+.|.|.+++++..+++||||+| + ..|+||||+|++.|.++||+|||.
T Consensus 881 ~~~l~--S~~dwdivrKCIcs~~fhn~Arlkg~g~YV~~~tg~~c~lHPsS~L~g~y~p~Yivyhel~~T~keym~cvT~ 958 (1042)
T KOG0924|consen 881 KLPLI--SSDDWDIVRKCICSAYFHNAARLKGIGEYVNLSTGIPCHLHPSSVLHGLYTPDYIVYHELLMTTKEYMQCVTS 958 (1042)
T ss_pred CCCcc--cCchHHHHHHHHHHHHHHHHHHhccCceEEEccCCcceeecchHhhhcCCCCCeeeehHHHHhHHHHHHHHhh
Confidence 34553 4599999999999999999999999999999999999999999999 5 499999999999999999999999
Q ss_pred eChhHHHhhcccccccCC
Q psy2073 83 VKPEWLIKLAPQYYELQN 100 (126)
Q Consensus 83 I~~~WL~~~~p~~~~~~~ 100 (126)
|+|+||.+++|-||...+
T Consensus 959 v~~~wl~E~gp~~y~ik~ 976 (1042)
T KOG0924|consen 959 VSPEWLAELGPMFYSIKE 976 (1042)
T ss_pred CCHHHHHHhCceeEeccc
Confidence 999999999999997664
No 5
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.83 E-value=4.5e-21 Score=175.08 Aligned_cols=92 Identities=21% Similarity=0.385 Sum_probs=83.1
Q ss_pred CccCHHHHHHHHHHhhhhcceeeCCCC-CeEeeecCcEEEEcCCCCC-CCCCceEEEeeecccccceeeecceeChhHHH
Q psy2073 12 YNKNYSILFYSTLSESLLQVAHLEKDG-RYLTIKDNQVVQLHPSTCL-DHKPEWVVYNEFVLTTKNYIRTVTDVKPEWLI 89 (126)
Q Consensus 12 ~~~~~~~I~k~l~sG~~~nvA~~~~~~-~Y~~~~~~~~v~IHPsS~L-~~~p~wIvy~El~~tsk~y~r~vs~I~~~WL~ 89 (126)
++.+++.|++|||+|||.|+|++..++ .|.+.+ +..++|||+|+| +++|+||||+|++.|+|.|||+|+.|+|+||.
T Consensus 611 ~~~~~~~i~~all~G~~~nva~~~~~~~~y~~~~-~~~~~ihP~S~L~~~~p~wvv~~Elv~Tsr~y~r~va~I~p~Wl~ 689 (1294)
T PRK11131 611 EPAEYREIHTALLTGLLSHIGMKDAEKQEYTGAR-NARFSIFPGSGLFKKPPKWVMVAELVETSRLWGRIAARIEPEWIE 689 (1294)
T ss_pred CcccHHHHHHHHHhhcHHHHeeccCCCCeEEccC-CcEEEEcCCccccCCCCCEEEEEeeeccChhhhhhhcccCHHHHH
Confidence 356899999999999999999998765 487776 788999999999 88999999999999999999999999999999
Q ss_pred hhcccccccCCCCch
Q psy2073 90 KLAPQYYELQNFPQC 104 (126)
Q Consensus 90 ~~~p~~~~~~~~~~~ 104 (126)
++||++|+.+.+++.
T Consensus 690 ~~a~~l~~~~y~ePh 704 (1294)
T PRK11131 690 PLAQHLIKRSYSEPH 704 (1294)
T ss_pred HHHHHhccccCCCCc
Confidence 999999987766543
No 6
>KOG0923|consensus
Probab=99.82 E-value=5.6e-21 Score=164.48 Aligned_cols=95 Identities=36% Similarity=0.740 Sum_probs=88.6
Q ss_pred ccCHHHHHHHHHHhhhhcceeeCCCCCeEeeecCcEEEEcCCCCC-CCCCceEEEeeecccccceeeecceeChhHHHhh
Q psy2073 13 NKNYSILFYSTLSESLLQVAHLEKDGRYLTIKDNQVVQLHPSTCL-DHKPEWVVYNEFVLTTKNYIRTVTDVKPEWLIKL 91 (126)
Q Consensus 13 ~~~~~~I~k~l~sG~~~nvA~~~~~~~Y~~~~~~~~v~IHPsS~L-~~~p~wIvy~El~~tsk~y~r~vs~I~~~WL~~~ 91 (126)
..+...||+|+.+|||+|+|++.++|+|+++...+.|++||.|+| ...|.||||+||+.|++.|||.++.|+++||.++
T Consensus 798 ~~~~~~irk~i~aGff~h~a~l~~~g~y~tvk~~~tv~~hp~S~l~~~~P~wvvy~eLv~tske~mr~~~e~e~~Wlie~ 877 (902)
T KOG0923|consen 798 QNDLDKIRKAITAGFFYHTAKLSKGGHYRTVKHPQTVSIHPNSGLFEQLPRWVVYHELVLTSKEFMRQVIEIEEEWLIEV 877 (902)
T ss_pred hHHHHHHHHHHhccccccceeccCCCcceeeccCcceeecCcccccccCCceEEEeehhcChHHHHHHHHhhhhhHHHHh
Confidence 346789999999999999999999999999999999999999999 8899999999999999999999999999999999
Q ss_pred cccccccCCCCchHHH
Q psy2073 92 APQYYELQNFPQCEAK 107 (126)
Q Consensus 92 ~p~~~~~~~~~~~~~~ 107 (126)
|||||+.+++.+...+
T Consensus 878 aphyyk~kdled~~~k 893 (902)
T KOG0923|consen 878 APHYYKLKDLEDATNK 893 (902)
T ss_pred chhhhhhhhccccccc
Confidence 9999998887766544
No 7
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.68 E-value=6.1e-17 Score=148.40 Aligned_cols=86 Identities=26% Similarity=0.473 Sum_probs=79.4
Q ss_pred ccCHHHHHHHHHHhhhhcceeeCCCCCeEeeecCcEEEEcCCCCC-CCCCceEEEeeecccccceeeecceeChhHHHhh
Q psy2073 13 NKNYSILFYSTLSESLLQVAHLEKDGRYLTIKDNQVVQLHPSTCL-DHKPEWVVYNEFVLTTKNYIRTVTDVKPEWLIKL 91 (126)
Q Consensus 13 ~~~~~~I~k~l~sG~~~nvA~~~~~~~Y~~~~~~~~v~IHPsS~L-~~~p~wIvy~El~~tsk~y~r~vs~I~~~WL~~~ 91 (126)
+.+++.|++||++||+.|||++..++.|.+.+ ++.++|||+|+| +++|+||||.|++.|++.|||+|+.|+|+||.++
T Consensus 603 ~~~~~~i~~~l~~g~~~~iA~~~~~~~y~~~~-g~~~~ihP~S~L~~~~p~wvv~~elv~t~~~~ir~~a~I~p~wl~~~ 681 (1283)
T TIGR01967 603 PADYDAIHKALLSGLLSQIGMKDEKHEYDGAR-GRKFHIFPGSPLFKKPPKWVMAAELVETSKLYARLVAKIEPEWVEPV 681 (1283)
T ss_pred CccHHHHHHHHHHhhHHHHheeCCCCcEEecC-CcEEEECCCccccCCCCCEEEEeeecccchheEeeeccCCHHHHHHH
Confidence 45678899999999999999998878899886 678999999999 8889999999999999999999999999999999
Q ss_pred cccccccC
Q psy2073 92 APQYYELQ 99 (126)
Q Consensus 92 ~p~~~~~~ 99 (126)
+|++++.+
T Consensus 682 ~~~~~~~~ 689 (1283)
T TIGR01967 682 AGHLIKKN 689 (1283)
T ss_pred hHHHhEec
Confidence 99998765
No 8
>KOG0926|consensus
Probab=99.49 E-value=1e-14 Score=128.26 Aligned_cols=94 Identities=27% Similarity=0.373 Sum_probs=83.8
Q ss_pred CccCCCccCHHHHHHHHHHhhhhcceeeCCCCCeEeeecCcEEEEcCCCCC-CCCCceEEEeeecccccceee-ecceeC
Q psy2073 7 PFGFIYNKNYSILFYSTLSESLLQVAHLEKDGRYLTIKDNQVVQLHPSTCL-DHKPEWVVYNEFVLTTKNYIR-TVTDVK 84 (126)
Q Consensus 7 ~f~~~~~~~~~~I~k~l~sG~~~nvA~~~~~~~Y~~~~~~~~v~IHPsS~L-~~~p~wIvy~El~~tsk~y~r-~vs~I~ 84 (126)
...+|++.+...+|+.|||||.++||++.+-..|.+..-+..++|||+|+| .+.|+||+|.|++.|++.||. +++.|+
T Consensus 931 ~l~ppt~~q~~lLrQ~i~Ag~~DrVArk~~~~~y~~~~i~~~~fl~~~svl~~~ape~viY~el~~~~~~~~~~~v~~v~ 1010 (1172)
T KOG0926|consen 931 TLKPPTDTQAKLLRQMICAGFADRVARKVDATEYDAAKIQEPVFLHRWSVLINSAPELVIYQELLLTNRPYMHGGVTAVR 1010 (1172)
T ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHHhccccccchhhhcCceeeeehhhhhccCccceehhhhhhcCCcccccceEEEc
Confidence 456788899999999999999999999887777988888889999999999 999999999999999887654 599999
Q ss_pred hhHHHhhcccccccCC
Q psy2073 85 PEWLIKLAPQYYELQN 100 (126)
Q Consensus 85 ~~WL~~~~p~~~~~~~ 100 (126)
|+||+..++.+|-+++
T Consensus 1011 pewl~~~~~slcn~~e 1026 (1172)
T KOG0926|consen 1011 PEWLLNHAKSLCNFSE 1026 (1172)
T ss_pred hHHHHhhhhhhccccc
Confidence 9999999998776553
No 9
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=98.50 E-value=2.6e-07 Score=82.80 Aligned_cols=82 Identities=12% Similarity=0.127 Sum_probs=67.0
Q ss_pred CHHHHHHHHHHhhhhcceeeCCCCCeEeeecCcEEEEcCCCCCCCCCceEEEeeecccc-cc--eeeecceeChhHHHhh
Q psy2073 15 NYSILFYSTLSESLLQVAHLEKDGRYLTIKDNQVVQLHPSTCLDHKPEWVVYNEFVLTT-KN--YIRTVTDVKPEWLIKL 91 (126)
Q Consensus 15 ~~~~I~k~l~sG~~~nvA~~~~~~~Y~~~~~~~~v~IHPsS~L~~~p~wIvy~El~~ts-k~--y~r~vs~I~~~WL~~~ 91 (126)
+.+.+.+||++||+++||++..++.+..+.+|+.+.+||+|.|.. .+|+++.|+..++ +. .|+.+++|+++||.+.
T Consensus 487 ~~~~~~~~la~aypdriA~~r~~~~~~~l~~G~~a~l~~~~~l~~-~~~lv~a~~~~~~~~~~~ri~~a~~l~~~~l~~~ 565 (812)
T PRK11664 487 DSSLIAPLLALAFPDRIARRRGQDGRYQLANGMGAMLDADDALSR-HEWLIAPLLLQGSASPDARILLALPLDIDELVQR 565 (812)
T ss_pred ChHHHHHHHHHHCHHHHhhhcCCCCeEEeeCCCeEEECCCCcccC-CCeEEEEEhhccCccccceeeEeeccCHHHHHHH
Confidence 344588999999999999977654456777899999999999932 3999999997663 33 4778999999999999
Q ss_pred cccccc
Q psy2073 92 APQYYE 97 (126)
Q Consensus 92 ~p~~~~ 97 (126)
+++.+.
T Consensus 566 ~~~~~~ 571 (812)
T PRK11664 566 CPQLVQ 571 (812)
T ss_pred HHHhce
Confidence 987764
No 10
>KOG0920|consensus
Probab=98.49 E-value=2.1e-07 Score=83.86 Aligned_cols=84 Identities=18% Similarity=0.259 Sum_probs=67.5
Q ss_pred CccCHHHHHHHHHHhhhhcceeeCC---CCC---eEeeecCcEEEEcCCCCC-C---CCCceEEEeeeccccc-ceeeec
Q psy2073 12 YNKNYSILFYSTLSESLLQVAHLEK---DGR---YLTIKDNQVVQLHPSTCL-D---HKPEWVVYNEFVLTTK-NYIRTV 80 (126)
Q Consensus 12 ~~~~~~~I~k~l~sG~~~nvA~~~~---~~~---Y~~~~~~~~v~IHPsS~L-~---~~p~wIvy~El~~tsk-~y~r~v 80 (126)
+..+.+.++.+||+|+++|+|+... ... |.+-. ...++|||+|+. + ....|++|.|.+.|++ .|+|++
T Consensus 754 ~s~~~~~iravl~a~lyP~i~~~~~~~~~~~~~~~~~~~-~~~v~i~~~sv~~~~~~~~~p~l~~~~k~~t~~~~~~rd~ 832 (924)
T KOG0920|consen 754 NSQNPELVRAVLCAGLYPNIAFVRRMEPKSKSVTFVTKA-DGRVIIHPSSVNEQSTGFQSPFLVFPEKVKSTRLVSLRDT 832 (924)
T ss_pred cCCCHHHHHHHHhccCCCceeeeecccCCcCcceeecCC-ceeEEEecchhhccccccCCcceEEeeecccCCcceeeec
Confidence 4677899999999999999998774 222 22222 247999999999 2 2334999999999999 999999
Q ss_pred ceeChhHHHhhccccc
Q psy2073 81 TDVKPEWLIKLAPQYY 96 (126)
Q Consensus 81 s~I~~~WL~~~~p~~~ 96 (126)
|.|.+.-++.+++...
T Consensus 833 T~v~~~~~llfgg~~~ 848 (924)
T KOG0920|consen 833 TSVSSSALLLFGGGIS 848 (924)
T ss_pred CCCCcHHheeecCCce
Confidence 9999999998888544
No 11
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=98.27 E-value=9.8e-08 Score=85.60 Aligned_cols=79 Identities=34% Similarity=0.537 Sum_probs=73.4
Q ss_pred CHHHHHHHHHHhhhhcceeeCCCCC-eEeeecCcEEEEcCCC-CC-CCCCceEEEeeecccccceee-----------ec
Q psy2073 15 NYSILFYSTLSESLLQVAHLEKDGR-YLTIKDNQVVQLHPST-CL-DHKPEWVVYNEFVLTTKNYIR-----------TV 80 (126)
Q Consensus 15 ~~~~I~k~l~sG~~~nvA~~~~~~~-Y~~~~~~~~v~IHPsS-~L-~~~p~wIvy~El~~tsk~y~r-----------~v 80 (126)
.|+.+++|+++|+..|++.+..++. |.++.++..+++||+| .+ ...++|++|++.+.|++.|++ ++
T Consensus 615 ~~d~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 694 (845)
T COG1643 615 IWDDIRGALAAGRKLNIAQLQLDGRPYVTLSDNTPVFAHPSSVRLGLVLLEWIKYAEFLRTRKGYLREGRGERWPDVQTL 694 (845)
T ss_pred hHHHHhhhhhhheecceeeeeccccccccCCCCceeEecchhHhhcccCcchHHHHHHHHHHHHHHhhcccccCcccchH
Confidence 5799999999999999999998776 9999999999999999 55 789999999999999999999 69
Q ss_pred ceeChhHHHhhcc
Q psy2073 81 TDVKPEWLIKLAP 93 (126)
Q Consensus 81 s~I~~~WL~~~~p 93 (126)
+++..+||.+.++
T Consensus 695 ~~~~~~wL~~~~~ 707 (845)
T COG1643 695 IELLKLWLKEQVK 707 (845)
T ss_pred hhhHHHhhhhhcc
Confidence 9999999999888
No 12
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=96.42 E-value=0.0069 Score=54.84 Aligned_cols=75 Identities=19% Similarity=0.209 Sum_probs=60.2
Q ss_pred HHHHHHHhhhhcceeeCCC-CCeEeeecCcEEEEcCCCCC-CCCCceEEEeeeccc---ccceeeecceeChhHHHhhcc
Q psy2073 19 LFYSTLSESLLQVAHLEKD-GRYLTIKDNQVVQLHPSTCL-DHKPEWVVYNEFVLT---TKNYIRTVTDVKPEWLIKLAP 93 (126)
Q Consensus 19 I~k~l~sG~~~nvA~~~~~-~~Y~~~~~~~~v~IHPsS~L-~~~p~wIvy~El~~t---sk~y~r~vs~I~~~WL~~~~p 93 (126)
+-.+|+.+|.++||++..+ +.| .+.+|+.+.+++.|.| +. +|++-.|+..+ ....++.++.|+++||...++
T Consensus 498 ~g~lla~a~pdria~~r~~~~~y-~l~~G~~~~l~~~~~l~~~--~~l~~a~~~~~~~~~~~~i~~a~~i~~~~~~~~~~ 574 (819)
T TIGR01970 498 LGLLLALAFPDRIAKRRGQPGRY-QLANGRGAVLSAEDALARE--PWLVAADLGEGQGKTAARILLAAPVDEALLRQVLP 574 (819)
T ss_pred HhHHHhhhChHhheeccCCCCeE-ECCCCCeeEeCCCCcccCC--CeEEEEEeeccCCccccceeeeccCCHHHHHHHhH
Confidence 6679999999999997654 446 4556888999999999 54 99999999634 234688999999999999888
Q ss_pred ccc
Q psy2073 94 QYY 96 (126)
Q Consensus 94 ~~~ 96 (126)
+.+
T Consensus 575 ~~~ 577 (819)
T TIGR01970 575 DLV 577 (819)
T ss_pred HHc
Confidence 654
No 13
>KOG0921|consensus
Probab=95.36 E-value=0.019 Score=52.68 Aligned_cols=83 Identities=14% Similarity=0.179 Sum_probs=65.5
Q ss_pred ccCHHHHHHHHHHhhhhcceeeCCCCCeEeeecCcEEEEcCCCCC--------CCCCceEEEeeecccccceeeecceeC
Q psy2073 13 NKNYSILFYSTLSESLLQVAHLEKDGRYLTIKDNQVVQLHPSTCL--------DHKPEWVVYNEFVLTTKNYIRTVTDVK 84 (126)
Q Consensus 13 ~~~~~~I~k~l~sG~~~nvA~~~~~~~Y~~~~~~~~v~IHPsS~L--------~~~p~wIvy~El~~tsk~y~r~vs~I~ 84 (126)
+.+....+..||.++++|+|......+-.|+..+. ..||-+|++ +.+..+.||.|.+.|.-.=.+..|.|.
T Consensus 982 d~~l~~~~~lL~~~lypn~~~y~ekrkvLtTe~~~-alihk~Svncp~S~qdM~fPsPFFVFGEKIRTRAIS~K~MslVs 1060 (1282)
T KOG0921|consen 982 DRELNLMRSLLVMALYPNVAYYVEKRKVLTTEQSS-ALIHKYSVNCPNSRQEMDFPSPFFVFGEKIRTRAISCKQMSLVS 1060 (1282)
T ss_pred CchhHHHHHHHHhhcCCccceeccceeEEeecchh-hhhhhhcccCCCcccccCCCCceeeechhhhhheecccCccccC
Confidence 44566789999999999999988776666665444 567767666 235689999999999888899999999
Q ss_pred hhHHHhhccccc
Q psy2073 85 PEWLIKLAPQYY 96 (126)
Q Consensus 85 ~~WL~~~~p~~~ 96 (126)
|..|+-+|..-.
T Consensus 1061 PLQLLLF~SrKV 1072 (1282)
T KOG0921|consen 1061 PLQLLLFGSRKV 1072 (1282)
T ss_pred hHHHhhhhhhhc
Confidence 999998877533
No 14
>PF08479 POTRA_2: POTRA domain, ShlB-type; InterPro: IPR013686 The POTRA domain (for polypeptide-transport-associated domain) is found towards the N terminus of ShlB family proteins (IPR005565 from INTERPRO). ShlB is important in the secretion and activation of the haemolysin ShlA. It has been postulated that the POTRA domain has a chaperone-like function over ShlA; it may fold back into the C-terminal beta-barrel channel []. ; PDB: 2X8X_X 2QDZ_A 3NJT_A 3MC8_A 3MC9_B.
Probab=35.07 E-value=64 Score=20.01 Aligned_cols=48 Identities=15% Similarity=0.115 Sum_probs=28.0
Q ss_pred cceeeecceeChhHHHhhcccccccCCCCchHHHHHHHHHHHHHHhhhhhcCC
Q psy2073 74 KNYIRTVTDVKPEWLIKLAPQYYELQNFPQCEAKRQLEILQAKMETRQYQDGF 126 (126)
Q Consensus 74 k~y~r~vs~I~~~WL~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (126)
+..+.+.+.++.++|.++...+. -+.+ .-..+.++.+.+++.+.++||
T Consensus 5 ~i~~~G~~~~~~~~l~~~~~~~~-g~~l----~~~~l~~~~~~l~~~y~~~GY 52 (76)
T PF08479_consen 5 GIRFEGNTLLPEEELQAILAPYI-GRCL----TLADLQQLADALTNYYREKGY 52 (76)
T ss_dssp EEEEES-TSSSCCHHHHHHGGGT-TSBB-----HHHHHHHHHHHHHHHHHTT-
T ss_pred EEEEECCCcCCHHHHHHHHHHhc-CCCc----CHHHHHHHHHHHHHHHHHcCc
Confidence 44566778888899988866544 2233 334555566666666655553
No 15
>CHL00145 psaD photosystem I subunit II; Validated
Probab=28.34 E-value=1.1e+02 Score=21.97 Aligned_cols=54 Identities=17% Similarity=0.034 Sum_probs=32.0
Q ss_pred CCCCCccCCCccCHH-----------HHHHHHHHhhhhcceeeCCCC-CeEeeecCcEEEEcCCCC
Q psy2073 3 YQEIPFGFIYNKNYS-----------ILFYSTLSESLLQVAHLEKDG-RYLTIKDNQVVQLHPSTC 56 (126)
Q Consensus 3 ~~~~~f~~~~~~~~~-----------~I~k~l~sG~~~nvA~~~~~~-~Y~~~~~~~~v~IHPsS~ 56 (126)
..++-|.+|++.-.. .=-+||+-|-=...-.+-.|- .|+..-++...++||.--
T Consensus 36 ~keqvFEmPTGGAA~M~~G~NLlylARKEQclALgtQLrtkfKI~dyKIYRifP~Ge~~~LhPkDG 101 (139)
T CHL00145 36 PKEQIFEMPTGGAAIMRNGENLLYLARKEQCLALGTQLRTKFKINDYKIYRIFPNGEVQYLHPKDG 101 (139)
T ss_pred CccceeecCCchhhhhhcCchhhhhhHHHHHHHHHHHHhhcccccccEEEEECCCCceEEecCCCC
Confidence 356778888765421 224666655433332222232 477777899999998653
No 16
>KOG3170|consensus
Probab=27.26 E-value=64 Score=25.25 Aligned_cols=72 Identities=18% Similarity=0.142 Sum_probs=46.8
Q ss_pred HHHHHHhhhhcceeeCCCCCeEeeecCcEEEEcCCCCCCCCCceEEEeeeccc-----cccee-eecceeChhHHHhhcc
Q psy2073 20 FYSTLSESLLQVAHLEKDGRYLTIKDNQVVQLHPSTCLDHKPEWVVYNEFVLT-----TKNYI-RTVTDVKPEWLIKLAP 93 (126)
Q Consensus 20 ~k~l~sG~~~nvA~~~~~~~Y~~~~~~~~v~IHPsS~L~~~p~wIvy~El~~t-----sk~y~-r~vs~I~~~WL~~~~p 93 (126)
..+|+++.+..+|++-|.-+|.-+...+-+--.|.|. -|..+||++=-.. -..+= +++|..+-+|++--++
T Consensus 125 ~c~Ll~~~l~~la~kfp~iKFVki~at~cIpNYPe~n---lPTl~VY~~G~lk~q~igll~lgG~n~t~ed~e~~L~qag 201 (240)
T KOG3170|consen 125 LCALLSHHLQSLACKFPQIKFVKIPATTCIPNYPESN---LPTLLVYHHGALKKQMIGLLELGGMNLTMEDVEDFLVQAG 201 (240)
T ss_pred HHHHHHHHHHHHhhcCCcceEEecccccccCCCcccC---CCeEEEeecchHHhheehhhhhcCCcCCHHHHHHHHHhcc
Confidence 4578889999999988776666665554444445443 4788999863221 11232 6788888888766555
Q ss_pred c
Q psy2073 94 Q 94 (126)
Q Consensus 94 ~ 94 (126)
.
T Consensus 202 a 202 (240)
T KOG3170|consen 202 A 202 (240)
T ss_pred c
Confidence 3
No 17
>PRK06630 hypothetical protein; Provisional
Probab=25.99 E-value=35 Score=23.41 Aligned_cols=23 Identities=22% Similarity=0.628 Sum_probs=16.8
Q ss_pred CCCCceEEEeeecccccceeeecceeChhHH
Q psy2073 58 DHKPEWVVYNEFVLTTKNYIRTVTDVKPEWL 88 (126)
Q Consensus 58 ~~~p~wIvy~El~~tsk~y~r~vs~I~~~WL 88 (126)
...-.||+|... -+.|.|.|+|-
T Consensus 35 gr~rRWViY~g~--------~daS~VPpeWH 57 (99)
T PRK06630 35 GRPRRFVIYKNV--------NEPTKIPPSWH 57 (99)
T ss_pred CCceEEEEeCCC--------CccccCCcchh
Confidence 334579999862 36888999984
No 18
>KOG1881|consensus
Probab=22.54 E-value=1.1e+02 Score=28.21 Aligned_cols=36 Identities=8% Similarity=0.209 Sum_probs=21.5
Q ss_pred eEEEeeecccccceeeecceeChhHHHhhcccccccC
Q psy2073 63 WVVYNEFVLTTKNYIRTVTDVKPEWLIKLAPQYYELQ 99 (126)
Q Consensus 63 wIvy~El~~tsk~y~r~vs~I~~~WL~~~~p~~~~~~ 99 (126)
|+||. +..|..+++-.--.=.+.|+....++.+++.
T Consensus 221 ~~i~d-lgsThgt~~NK~rvppk~yir~~Vg~v~~fg 256 (793)
T KOG1881|consen 221 WYIYD-LGSTHGTFLNKDRVPPKVYIRDRVGHVARFG 256 (793)
T ss_pred eEEee-ccccccceeccccCCCcchhhhhHHHHHHhc
Confidence 99985 7777666664433334466665555554443
No 19
>cd00929 Cyt_c_Oxidase_VIIc Cytochrome c oxidase subunit VIIc. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. The VIIc subunit is found only in eukaryotes and its specific function remains unclear. Peroxide inactivation of bovine CcO coincides with the direct oxidation of tryptophan (W19) within subunit VIIc, along with other structural changes in other subunits.
Probab=21.45 E-value=56 Score=19.21 Aligned_cols=13 Identities=23% Similarity=0.460 Sum_probs=10.2
Q ss_pred CCCCCCccCCCcc
Q psy2073 2 PYQEIPFGFIYNK 14 (126)
Q Consensus 2 ~~~~~~f~~~~~~ 14 (126)
|.++.||+..|+-
T Consensus 7 p~sNLPF~~~nk~ 19 (46)
T cd00929 7 PGSNLPFSVTNKW 19 (46)
T ss_pred CCCCCCcccCccc
Confidence 8899999866544
No 20
>PF05820 DUF845: Baculovirus protein of unknown function (DUF845); InterPro: IPR008563 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf81; it is a family of uncharacterised viral proteins.
Probab=20.84 E-value=65 Score=22.77 Aligned_cols=14 Identities=14% Similarity=0.349 Sum_probs=11.3
Q ss_pred ecCcEEEEcCCCCC
Q psy2073 44 KDNQVVQLHPSTCL 57 (126)
Q Consensus 44 ~~~~~v~IHPsS~L 57 (126)
.+|..+-+||.|--
T Consensus 55 sng~~FEfHPGSQP 68 (119)
T PF05820_consen 55 SNGYSFEFHPGSQP 68 (119)
T ss_pred CCCceEEECCCCCC
Confidence 46778999999965
Done!