Query psy2073
Match_columns 126
No_of_seqs 107 out of 1054
Neff 6.6
Searched_HMMs 29240
Date Fri Aug 16 23:38:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2073.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2073hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3i4u_A ATP-dependent RNA helic 99.9 1.5E-27 5E-32 187.0 10.3 93 11-103 161-254 (270)
2 2xau_A PRE-mRNA-splicing facto 99.9 3.1E-23 1.1E-27 181.0 12.9 110 12-121 641-751 (773)
3 1v54_L VIIIA, cytochrome C oxi 24.3 83 0.0028 17.6 3.1 11 2-12 7-17 (47)
4 4g5a_A Uncharacterized protein 23.5 14 0.00049 23.6 -0.3 24 69-92 4-27 (99)
5 2y69_L Cytochrome C oxidase su 20.6 1E+02 0.0034 18.4 3.1 11 2-12 23-33 (63)
6 2vo9_A EAD500, L-alanyl-D-glut 20.0 91 0.0031 22.0 3.3 46 73-119 5-50 (179)
7 3aia_A UPF0217 protein MJ1640; 14.9 1.5E+02 0.0051 21.8 3.5 39 12-50 31-73 (211)
8 2qfa_C Inner centromere protei 10.9 24 0.00082 20.1 -1.5 18 74-91 20-37 (47)
9 1hcd_A Hisactophilin; actin bi 10.1 2.6E+02 0.0088 18.2 3.1 22 30-51 42-63 (118)
10 3vlc_E Golgi to ER traffic pro 10.1 79 0.0027 20.5 0.6 33 84-118 15-47 (94)
No 1
>3i4u_A ATP-dependent RNA helicase DHX8; splicing, ATP-binding, hydrolase, mRNA processing, splicing, nucleotide-binding, nucleus, phosphoprotein, SPLI; 2.10A {Homo sapiens}
Probab=99.95 E-value=1.5e-27 Score=187.00 Aligned_cols=93 Identities=37% Similarity=0.665 Sum_probs=85.0
Q ss_pred CCccCHHHHHHHHHHhhhhcceeeCCCCCeEeeecCcEEEEcCCCCC-CCCCceEEEeeecccccceeeecceeChhHHH
Q psy2073 11 IYNKNYSILFYSTLSESLLQVAHLEKDGRYLTIKDNQVVQLHPSTCL-DHKPEWVVYNEFVLTTKNYIRTVTDVKPEWLI 89 (126)
Q Consensus 11 ~~~~~~~~I~k~l~sG~~~nvA~~~~~~~Y~~~~~~~~v~IHPsS~L-~~~p~wIvy~El~~tsk~y~r~vs~I~~~WL~ 89 (126)
+++.+++.|++|||+|||+|||++.+++.|+++.+++.|+|||||+| +.+|+||||+|++.|+|.|||+||.|+|+||.
T Consensus 161 s~~~~~~~i~~~L~aG~~~nvA~~~~~~~Y~~~~~~~~v~iHPsS~L~~~~p~wvvy~Elv~Tsk~y~r~vt~I~p~wL~ 240 (270)
T 3i4u_A 161 SCGKSTVRVQKAICSGFFRNAAKKDPQEGYRTLIDQQVVYIHPSSALFNRQPEWVVYHELVLTTKEYMREVTTIDPRWLV 240 (270)
T ss_dssp CCTTCTHHHHHHHHHHHGGGEEEECSSSSEEETTTCCEEEECTTSTTTTSCCSEEEEEEEEESSSEEEEEEEECCHHHHH
T ss_pred CCcchHHHHHHHHHHHhHHHHheeCCCCceEEccCCCEEEECchhhhcCCCCCEEEEEehhhhhHhHHHhccccCHHHHH
Confidence 34667899999999999999999999999999999999999999999 88999999999999999999999999999999
Q ss_pred hhcccccccCCCCc
Q psy2073 90 KLAPQYYELQNFPQ 103 (126)
Q Consensus 90 ~~~p~~~~~~~~~~ 103 (126)
+++|++|+..+++.
T Consensus 241 ~~ap~~~~~~~~~~ 254 (270)
T 3i4u_A 241 EFAPAFFKVLEVDL 254 (270)
T ss_dssp HHCTTTEECC----
T ss_pred HHhHHHhccccccc
Confidence 99999999887754
No 2
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.89 E-value=3.1e-23 Score=181.04 Aligned_cols=110 Identities=48% Similarity=0.815 Sum_probs=99.3
Q ss_pred CccCHHHHHHHHHHhhhhcceeeCCCCC-eEeeecCcEEEEcCCCCCCCCCceEEEeeecccccceeeecceeChhHHHh
Q psy2073 12 YNKNYSILFYSTLSESLLQVAHLEKDGR-YLTIKDNQVVQLHPSTCLDHKPEWVVYNEFVLTTKNYIRTVTDVKPEWLIK 90 (126)
Q Consensus 12 ~~~~~~~I~k~l~sG~~~nvA~~~~~~~-Y~~~~~~~~v~IHPsS~L~~~p~wIvy~El~~tsk~y~r~vs~I~~~WL~~ 90 (126)
+..+++.|++|||+|||+|||++.++|. |.++.+++.|+|||+|+|..+|+||||+|++.|++.|||+||.|+|+||.+
T Consensus 641 ~~~~~~~i~~~l~~g~~~~~a~~~~~~~~y~~~~~~~~~~ihp~s~l~~~~~~~v~~e~~~t~~~~~~~~~~i~~~~l~~ 720 (773)
T 2xau_A 641 SPKYFDNIRKALASGFFMQVAKKRSGAKGYITVKDNQDVLIHPSTVLGHDAEWVIYNEFVLTSKNYIRTVTSVRPEWLIE 720 (773)
T ss_dssp STTHHHHHHHHHHHHHTTSEEEECCC--CEEETTTCCEEEECTTCCCCTTCSEEEEEEEEESSSEEEEEEEECCHHHHHH
T ss_pred chhhHHHHHHHHHHhChHhheeeccCCCcceEeeCCCEEEECCCcccCCCCCEEEEEEeeccchhheeecccCCHHHHHH
Confidence 3456789999999999999999998886 999999999999999999656999999999999999999999999999999
Q ss_pred hcccccccCCCCchHHHHHHHHHHHHHHhhh
Q psy2073 91 LAPQYYELQNFPQCEAKRQLEILQAKMETRQ 121 (126)
Q Consensus 91 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (126)
++|++|+..+++.+++++.++.+.+++++++
T Consensus 721 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 751 (773)
T 2xau_A 721 IAPAYYDLSNFQKGDVKLSLERIKEKVDRLN 751 (773)
T ss_dssp HCTTTSCGGGCCSSHHHHHHHHHHHHHHC--
T ss_pred HHHHheeeccCCchhHHHHHHHHHHHhhhhh
Confidence 9999999999999999999999988887654
No 3
>1v54_L VIIIA, cytochrome C oxidase polypeptide VIIC; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.6.1 PDB: 1oco_L* 1occ_L* 1ocz_L* 1ocr_L* 1v55_L* 2dyr_L* 2dys_L* 2eij_L* 2eik_L* 2eil_L* 2eim_L* 2ein_L* 2occ_L* 2ybb_W* 2zxw_L* 3abk_L* 3abl_L* 3abm_L* 3ag1_L* 3ag2_L* ...
Probab=24.31 E-value=83 Score=17.64 Aligned_cols=11 Identities=36% Similarity=0.637 Sum_probs=8.9
Q ss_pred CCCCCCccCCC
Q psy2073 2 PYQEIPFGFIY 12 (126)
Q Consensus 2 ~~~~~~f~~~~ 12 (126)
|.++.||+..+
T Consensus 7 p~sNLPF~~~n 17 (47)
T 1v54_L 7 PGKNIPFSVEN 17 (47)
T ss_dssp TTTSSSSCCSS
T ss_pred CCCcCCcCCCc
Confidence 89999997554
No 4
>4g5a_A Uncharacterized protein; immunoglobulin - like beta-sandwich, structural genomics, JO center for structural genomics, JCSG; 1.69A {Bacteroides thetaiotaomicron}
Probab=23.50 E-value=14 Score=23.63 Aligned_cols=24 Identities=33% Similarity=0.560 Sum_probs=16.2
Q ss_pred ecccccceeeecceeChhHHHhhc
Q psy2073 69 FVLTTKNYIRTVTDVKPEWLIKLA 92 (126)
Q Consensus 69 l~~tsk~y~r~vs~I~~~WL~~~~ 92 (126)
.+.|...|.-.-|.|+|+||.-+.
T Consensus 4 hv~~k~dw~~qrt~vdpewlkvyv 27 (99)
T 4g5a_A 4 HVKTKSDWVIQRTPVDPEWLKVYV 27 (99)
T ss_dssp EECEEEECGGGGSCCCTTSEEEEE
T ss_pred cccchhceEEecccCChHHeEEEE
Confidence 344555566667889999986543
No 5
>2y69_L Cytochrome C oxidase subunit 7C; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=20.62 E-value=1e+02 Score=18.40 Aligned_cols=11 Identities=36% Similarity=0.637 Sum_probs=8.8
Q ss_pred CCCCCCccCCC
Q psy2073 2 PYQEIPFGFIY 12 (126)
Q Consensus 2 ~~~~~~f~~~~ 12 (126)
|+++.||+..+
T Consensus 23 p~sNLPF~~~n 33 (63)
T 2y69_L 23 PGKNIPFSVEN 33 (63)
T ss_dssp TTTSSSSCCSS
T ss_pred CCCcCCcCCcc
Confidence 88999997553
No 6
>2vo9_A EAD500, L-alanyl-D-glutamate peptidase; cell WALL biogenesis/degradation, secreted, cell WALL, hydro; 1.8A {Bacteriophage A500} SCOP: d.65.1.5
Probab=20.01 E-value=91 Score=22.03 Aligned_cols=46 Identities=13% Similarity=0.186 Sum_probs=28.1
Q ss_pred ccceeeecceeChhHHHhhcccccccCCCCchHHHHHHHHHHHHHHh
Q psy2073 73 TKNYIRTVTDVKPEWLIKLAPQYYELQNFPQCEAKRQLEILQAKMET 119 (126)
Q Consensus 73 sk~y~r~vs~I~~~WL~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (126)
...|.+.+..|+..||+.-+..-.....+ ..++.+.+.++.+.+.+
T Consensus 5 ~~~~~~~~~~~~~~~li~k~~~~l~~~gl-~~~aa~al~~m~~~a~~ 50 (179)
T 2vo9_A 5 HPQFEKGAMALTEAWLIEKANRKLNAGGM-YKITSDKTRNVIKKMAK 50 (179)
T ss_dssp -------CCCCCHHHHHHHHHHHHTSTTS-CHHHHHHHHHHHHHHHT
T ss_pred ccccccchhhcchhhcccccccccccccc-CHHHHHHHHHHHHHHHH
Confidence 35688999999999999988765544555 34466677777666554
No 7
>3aia_A UPF0217 protein MJ1640; DUF358, rRNA methyltransferase, spout-class fold, transferas; HET: SAM; 1.40A {Methanocaldococcus jannaschii} PDB: 3ai9_X*
Probab=14.86 E-value=1.5e+02 Score=21.76 Aligned_cols=39 Identities=8% Similarity=-0.014 Sum_probs=27.7
Q ss_pred CccCHHHHHHHHHHhhhhcceeeCCCCCeEeeecC----cEEE
Q psy2073 12 YNKNYSILFYSTLSESLLQVAHLEKDGRYLTIKDN----QVVQ 50 (126)
Q Consensus 12 ~~~~~~~I~k~l~sG~~~nvA~~~~~~~Y~~~~~~----~~v~ 50 (126)
+....+.|.+|+.+.+|.-...+..-..|..+.++ +.+.
T Consensus 31 ~~GR~DIl~r~l~~Al~~s~~~R~dv~vyl~l~~~p~p~~~I~ 73 (211)
T 3aia_A 31 SCGRLDLLCRCVSDAFFLSHDIRRDVVFYAVLYGQPNPPVCIK 73 (211)
T ss_dssp TTTSHHHHHHHHHHHHBCSSSBCTTEEEEEEECCSSSCCEEEE
T ss_pred CCCCeehHHHHHHHHHhhhhcccCCeEEEEEECCCCCCceEEE
Confidence 35568999999999999877655433456666665 5555
No 8
>2qfa_C Inner centromere protein; three-helical-bundle, long helix, protein complex, alternative splicing, apoptosis, cell cycle, cell division; HET: MES; 1.40A {Homo sapiens}
Probab=10.93 E-value=24 Score=20.11 Aligned_cols=18 Identities=11% Similarity=0.438 Sum_probs=15.3
Q ss_pred cceeeecceeChhHHHhh
Q psy2073 74 KNYIRTVTDVKPEWLIKL 91 (126)
Q Consensus 74 k~y~r~vs~I~~~WL~~~ 91 (126)
..|++++..++--||.++
T Consensus 20 ~eF~~~vdnk~mvWL~EI 37 (47)
T 2qfa_C 20 MEFLCNMDNKDLVWLEEI 37 (47)
T ss_dssp HHHHHHHHHTHHHHHHHH
T ss_pred HHHHHhccchhhHHHHHH
Confidence 368899999999999886
No 9
>1hcd_A Hisactophilin; actin binding; NMR {Dictyostelium discoideum} SCOP: b.42.5.2 PDB: 1hce_A
Probab=10.12 E-value=2.6e+02 Score=18.23 Aligned_cols=22 Identities=41% Similarity=0.572 Sum_probs=18.4
Q ss_pred cceeeCCCCCeEeeecCcEEEE
Q psy2073 30 QVAHLEKDGRYLTIKDNQVVQL 51 (126)
Q Consensus 30 nvA~~~~~~~Y~~~~~~~~v~I 51 (126)
.||-+...|.|..+.+...|++
T Consensus 42 kvalrth~gkyvsigdhkqvyl 63 (118)
T 1hcd_A 42 KVALKTHCGKYLSIGDHKQVYL 63 (118)
T ss_dssp EEEEESSSSCEEEEEETTEEEE
T ss_pred eEEEEeccCcEEEecCCceEEE
Confidence 5777888899999998888876
No 10
>3vlc_E Golgi to ER traffic protein 1; ATPase, membrane protein insertion, ATP binding, membrane PR binding; HET: ADP; 4.50A {Saccharomyces cerevisiae}
Probab=10.06 E-value=79 Score=20.49 Aligned_cols=33 Identities=15% Similarity=0.201 Sum_probs=8.4
Q ss_pred ChhHHHhhcccccccCCCCchHHHHHHHHHHHHHH
Q psy2073 84 KPEWLIKLAPQYYELQNFPQCEAKRQLEILQAKME 118 (126)
Q Consensus 84 ~~~WL~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (126)
...||..+||+ ....-.....++++.++.+++.
T Consensus 15 ~~~~~~~v~p~--s~~~~~~~~lk~E~~~lk~E~~ 47 (94)
T 3vlc_E 15 HEKWISKFAPG--NELSKKYLAKVKERHELKEFNN 47 (94)
T ss_dssp -------------CCTTHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCcc--cHhHHHHHHHHHHHHHHHHHHh
Confidence 45799999997 1111122234445555555544
Done!