Query psy2073
Match_columns 126
No_of_seqs 107 out of 1054
Neff 6.6
Searched_HMMs 13730
Date Fri Aug 16 23:38:33 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2073.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/2073hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1fo8a_ c.68.1.10 (A:) N-acety 21.9 31 0.0023 25.4 3.2 50 12-63 288-342 (343)
2 d1jb0d_ d.187.1.1 (D:) Photosy 13.0 64 0.0047 20.5 2.6 54 4-57 35-100 (138)
3 d1c9oa_ b.40.4.5 (A:) Major co 10.9 1.3E+02 0.0093 16.1 3.9 41 40-81 17-64 (66)
4 d1hyoa1 b.34.8.1 (A:1-118) Fum 9.4 42 0.003 20.8 0.7 11 1-11 12-22 (118)
5 d1oj5a_ d.110.3.8 (A:) PAS dom 8.8 1.4E+02 0.01 17.0 3.0 9 58-66 94-102 (109)
6 d1t15a2 c.15.1.3 (A:1758-1859) 8.6 51 0.0037 18.3 0.8 16 78-93 71-86 (102)
7 d1jvaa3 d.95.2.2 (A:582-698) V 8.4 83 0.006 18.9 1.8 22 17-38 14-35 (117)
8 d2j88h1 b.1.1.2 (H:113-180) Im 8.2 8.1 0.00059 21.7 -3.1 32 2-33 5-38 (68)
9 d2qn6b1 d.58.51.1 (B:176-264) 6.9 1.4E+02 0.01 17.2 2.3 18 12-29 14-31 (89)
10 d1r0ka3 d.81.1.3 (A:127-264) 1 6.8 76 0.0056 20.3 1.1 13 45-57 108-120 (138)
No 1
>d1fo8a_ c.68.1.10 (A:) N-acetylglucosaminyltransferase I {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=21.94 E-value=31 Score=25.43 Aligned_cols=50 Identities=14% Similarity=0.209 Sum_probs=33.7
Q ss_pred CccCHHHHHHHHHHhhhhc----ceeeCCCCCeEeeecCcEEEEcCCCCC-CCCCce
Q psy2073 12 YNKNYSILFYSTLSESLLQ----VAHLEKDGRYLTIKDNQVVQLHPSTCL-DHKPEW 63 (126)
Q Consensus 12 ~~~~~~~I~k~l~sG~~~n----vA~~~~~~~Y~~~~~~~~v~IHPsS~L-~~~p~w 63 (126)
+..+++.+-+|| |.+.. +.|-.-.|.-.....++.|++-|.|.. +.+|.|
T Consensus 288 ~~~~~~~~a~~~--~i~~~~k~g~~R~~y~giv~~~~~~~rv~lvp~~~~~~y~~~w 342 (343)
T d1fo8a_ 288 GRDSFKAFAKAL--GVMDDLKSGVPRAGYRGIVTFLFRGRRVHLAPPQTWDGYDPSW 342 (343)
T ss_dssp SHHHHHHHHHHT--TCCCCEETTEETTCBTTBEEEEETTEEEEEECCTTCCSCCTTC
T ss_pred CHHHHHHHHHHh--CCHhhccccCcccccceEEEEEECCEEEEEeCCCCcCcCCCCC
Confidence 455677777777 77663 333333444455567888999999988 888887
No 2
>d1jb0d_ d.187.1.1 (D:) Photosystem I subunit PsaD {Synechococcus elongatus [TaxId: 32046]}
Probab=12.96 E-value=64 Score=20.52 Aligned_cols=54 Identities=15% Similarity=0.091 Sum_probs=30.9
Q ss_pred CCCCccCCCccC-----------HHHHHHHHHHhhhhcceeeCCCC-CeEeeecCcEEEEcCCCCC
Q psy2073 4 QEIPFGFIYNKN-----------YSILFYSTLSESLLQVAHLEKDG-RYLTIKDNQVVQLHPSTCL 57 (126)
Q Consensus 4 ~~~~f~~~~~~~-----------~~~I~k~l~sG~~~nvA~~~~~~-~Y~~~~~~~~v~IHPsS~L 57 (126)
.++-|.+|++.- ...=-+||+-|-=.---.+..|- .|+..-++...++||.--+
T Consensus 35 keqvFEmPTGGAA~M~~G~Nlly~ARKEQclALgtQ~~~~~KI~dyKiYRifp~Ge~~~lhPkDGV 100 (138)
T d1jb0d_ 35 KEQVFEMPTAGAAVMREGENLVYFARKEQCLALAAQQLRPRKINDYKIYRIFPDGETVLIHPKDGV 100 (138)
T ss_dssp SCEEEECTTSSEEEECSEEEEEEESSHHHHHHHHHHHTGGGTCCCCEEEEECTTCCEEEEETTTSS
T ss_pred ccceeeccCchhhhhccCcchhhhhHHHHHHHhhhhhcccccccccEEEEEcCCCceEEeccCCCC
Confidence 456677666543 11234677666521111122233 4788888999999997544
No 3
>d1c9oa_ b.40.4.5 (A:) Major cold shock protein {Bacillus caldolyticus [TaxId: 1394]}
Probab=10.88 E-value=1.3e+02 Score=16.10 Aligned_cols=41 Identities=12% Similarity=0.199 Sum_probs=23.9
Q ss_pred eEeeecCcEEEEcCCCCC--CC----CCceEEEeeeccccc-ceeeecc
Q psy2073 40 YLTIKDNQVVQLHPSTCL--DH----KPEWVVYNEFVLTTK-NYIRTVT 81 (126)
Q Consensus 40 Y~~~~~~~~v~IHPsS~L--~~----~p~wIvy~El~~tsk-~y~r~vs 81 (126)
+.+..++..+++|-|++- .. .-+.|-|. +..+.+ ..+.+|+
T Consensus 17 FI~~d~g~DiF~H~s~l~~~~~~~L~~G~~V~f~-~~~~~~G~~A~~V~ 64 (66)
T d1c9oa_ 17 FIEVEGGSDVFVHFTAIQGEGFKTLEEGQEVSFE-IVQGNRGPQAANVV 64 (66)
T ss_dssp EEEETTEEEEEEEGGGBCSSSCCCCCTTCEEEEE-EEEETTEEEEEEEE
T ss_pred EEEecCCceEEEEehhcccccCCcCCCCCEEEEE-EEECCCCCEEEEEE
Confidence 555555678999988876 21 12467775 455444 3344443
No 4
>d1hyoa1 b.34.8.1 (A:1-118) Fumarylacetoacetate hydrolase, FAH, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=9.44 E-value=42 Score=20.76 Aligned_cols=11 Identities=36% Similarity=1.068 Sum_probs=8.4
Q ss_pred CCCCCCCccCC
Q psy2073 1 MPYQEIPFGFI 11 (126)
Q Consensus 1 ~~~~~~~f~~~ 11 (126)
.|+++.|||.-
T Consensus 12 FpiqNLPfGVf 22 (118)
T d1hyoa1 12 FPIQNLPYGVF 22 (118)
T ss_dssp CCTTTCCEEEE
T ss_pred CCcccCCeEEE
Confidence 48888888754
No 5
>d1oj5a_ d.110.3.8 (A:) PAS domain of steroid receptor coactivator 1A, NCo-A1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=8.75 E-value=1.4e+02 Score=16.99 Aligned_cols=9 Identities=0% Similarity=0.073 Sum_probs=5.2
Q ss_pred CCCCceEEE
Q psy2073 58 DHKPEWVVY 66 (126)
Q Consensus 58 ~~~p~wIvy 66 (126)
..+|++||=
T Consensus 94 ~~~~~~Ii~ 102 (109)
T d1oj5a_ 94 PDMQPFIMG 102 (109)
T ss_dssp --CCCEEEE
T ss_pred CCcccEEEE
Confidence 357788874
No 6
>d1t15a2 c.15.1.3 (A:1758-1859) Breast cancer associated protein, BRCA1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.59 E-value=51 Score=18.34 Aligned_cols=16 Identities=19% Similarity=0.393 Sum_probs=12.4
Q ss_pred eecceeChhHHHhhcc
Q psy2073 78 RTVTDVKPEWLIKLAP 93 (126)
Q Consensus 78 r~vs~I~~~WL~~~~p 93 (126)
.++-.|.++||.+-..
T Consensus 71 ~~i~iV~~~Wl~dsi~ 86 (102)
T d1t15a2 71 CEAPVVTREWVLDSVA 86 (102)
T ss_dssp CSSCEEEHHHHHHHHH
T ss_pred CCCcEEeeHHHHHHHH
Confidence 3677899999988544
No 7
>d1jvaa3 d.95.2.2 (A:582-698) VMA1-derived endonuclease (VDE) PI-SceI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=8.36 E-value=83 Score=18.86 Aligned_cols=22 Identities=5% Similarity=-0.210 Sum_probs=16.6
Q ss_pred HHHHHHHHHhhhhcceeeCCCC
Q psy2073 17 SILFYSTLSESLLQVAHLEKDG 38 (126)
Q Consensus 17 ~~I~k~l~sG~~~nvA~~~~~~ 38 (126)
..++.+|++|||+-=.....++
T Consensus 14 ~~~r~afL~Gl~d~DG~v~~~~ 35 (117)
T d1jvaa3 14 IGTRETFLAGLIDSDGYVTDEH 35 (117)
T ss_dssp HHHHHHHHHHHHHHHEEEECTT
T ss_pred HHHHHHHHHHHHhCCCcCcCCC
Confidence 6789999999998755554443
No 8
>d2j88h1 b.1.1.2 (H:113-180) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]}
Probab=8.16 E-value=8.1 Score=21.72 Aligned_cols=32 Identities=9% Similarity=-0.008 Sum_probs=12.6
Q ss_pred CCCCCCccCCCcc--CHHHHHHHHHHhhhhccee
Q psy2073 2 PYQEIPFGFIYNK--NYSILFYSTLSESLLQVAH 33 (126)
Q Consensus 2 ~~~~~~f~~~~~~--~~~~I~k~l~sG~~~nvA~ 33 (126)
|+++-+|.+.+.+ +-..-.-||+.||++.-+.
T Consensus 5 ~PsV~~l~ps~~~~~~~~vtl~CL~~gF~P~~i~ 38 (68)
T d2j88h1 5 PPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVT 38 (68)
T ss_dssp CCEEC-----------------CEEEEEBSSCCC
T ss_pred CCEEEEeCCChhhcCCCeEEEEEEEeceECCCcE
Confidence 4566677544332 1224468999999987554
No 9
>d2qn6b1 d.58.51.1 (B:176-264) eIF-2-alpha, C-terminal domain {Sulfolobus solfataricus [TaxId: 2287]}
Probab=6.91 E-value=1.4e+02 Score=17.16 Aligned_cols=18 Identities=0% Similarity=-0.422 Sum_probs=14.8
Q ss_pred CccCHHHHHHHHHHhhhh
Q psy2073 12 YNKNYSILFYSTLSESLL 29 (126)
Q Consensus 12 ~~~~~~~I~k~l~sG~~~ 29 (126)
.++.++.||++|.+|.-.
T Consensus 14 ~~dGIe~IK~aL~~a~~~ 31 (89)
T d2qn6b1 14 EPLGVEKIKEVISKALEN 31 (89)
T ss_dssp CTTTHHHHHHHHHHHHTT
T ss_pred CCccHHHHHHHHHHHHHh
Confidence 467799999999998744
No 10
>d1r0ka3 d.81.1.3 (A:127-264) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Zymomonas mobilis [TaxId: 542]}
Probab=6.81 E-value=76 Score=20.26 Aligned_cols=13 Identities=15% Similarity=0.524 Sum_probs=10.7
Q ss_pred cCcEEEEcCCCCC
Q psy2073 45 DNQVVQLHPSTCL 57 (126)
Q Consensus 45 ~~~~v~IHPsS~L 57 (126)
++..|-|||+|.+
T Consensus 108 ~~I~v~IHpqsii 120 (138)
T d1r0ka3 108 EKFEILVHPQSVI 120 (138)
T ss_dssp GGEEEEECTTCCE
T ss_pred HHeEEEECCCceE
Confidence 4567999999987
Done!