RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2073
         (126 letters)



>d2nyga1 c.140.1.2 (A:2-271) Uncharacterized protein YokD {Bacillus
           subtilis [TaxId: 1423]}
          Length = 270

 Score = 27.2 bits (60), Expect = 0.45
 Identities = 12/72 (16%), Positives = 21/72 (29%), Gaps = 5/72 (6%)

Query: 7   PFGFIYNKNYSILFYSTLSESLLQVAHLEKDGRYLTIKDNQVVQLHPSTCLDHKPEWVVY 66
           P G +Y +   +L      +S       E    Y  I +           ++ K  W  Y
Sbjct: 159 PLGKLYIRESYVLLLGADFDSSTCFHLAEYRIPYQKIINRGAP-----IIVEGKRVWKEY 213

Query: 67  NEFVLTTKNYIR 78
            E     + +  
Sbjct: 214 KELEFREELFQE 225


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.137    0.416 

Gapped
Lambda     K      H
   0.267   0.0577    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 472,101
Number of extensions: 19757
Number of successful extensions: 35
Number of sequences better than 10.0: 1
Number of HSP's gapped: 35
Number of HSP's successfully gapped: 7
Length of query: 126
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 51
Effective length of database: 1,377,846
Effective search space: 70270146
Effective search space used: 70270146
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (22.6 bits)