BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2074
(184 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q3MHN0|PSB6_BOVIN Proteasome subunit beta type-6 OS=Bos taurus GN=PSMB6 PE=1 SV=1
Length = 239
Score = 225 bits (574), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 99/165 (60%), Positives = 133/165 (80%)
Query: 17 APDWLTAKHSCGTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGS 76
APDW + S GTTI+AV+FDGGVV+GADSR++TG+Y+ANRV DKLT + D I+CCRSGS
Sbjct: 23 APDWENREVSTGTTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGS 82
Query: 77 AADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQELVYSYRDSLTAGIICAGWDRKKG 136
AADTQA++D V+Y L +EL E PLV++ A LF+E+ Y YR+ L AGII AGWD ++G
Sbjct: 83 AADTQAVADAVTYQLGFHSIELNEPPLVHTAASLFKEMCYRYREDLMAGIIIAGWDPQEG 142
Query: 137 GQVYCIPLGGMLMRQKMAMGGSGSTYLYGHMDNQFKENMTKKEAM 181
GQVY +P+GGM++RQ A+GGSGS+Y+YG++D ++E MTK+E +
Sbjct: 143 GQVYSVPMGGMMVRQPFAIGGSGSSYIYGYVDATYREGMTKEECL 187
>sp|P28073|PSB6_RAT Proteasome subunit beta type-6 OS=Rattus norvegicus GN=Psmb6 PE=1
SV=3
Length = 238
Score = 224 bits (572), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 103/176 (58%), Positives = 138/176 (78%), Gaps = 2/176 (1%)
Query: 8 VNAYHGGVEA--PDWLTAKHSCGTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRV 65
V+A G EA PDW + S GTTI+AV+FDGGVV+GADSR++TG+Y+ANRV DKLT +
Sbjct: 11 VSAPAFGPEALTPDWENREVSTGTTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPI 70
Query: 66 TDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQELVYSYRDSLTAG 125
D+I+CCRSGSAADTQA++D V+Y L +EL E PLV++ A LF+E+ Y YR+ L AG
Sbjct: 71 HDHIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAASLFKEMCYRYREDLMAG 130
Query: 126 IICAGWDRKKGGQVYCIPLGGMLMRQKMAMGGSGSTYLYGHMDNQFKENMTKKEAM 181
II AGWD ++GGQVY +P+GGM++RQ A+GGSGS+Y+YG++D ++E MTK E +
Sbjct: 131 IIIAGWDPQEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYREGMTKDECL 186
>sp|P28072|PSB6_HUMAN Proteasome subunit beta type-6 OS=Homo sapiens GN=PSMB6 PE=1 SV=4
Length = 239
Score = 224 bits (570), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 98/164 (59%), Positives = 133/164 (81%)
Query: 18 PDWLTAKHSCGTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSA 77
PDW + + S GTTI+AV+FDGGVV+GADSR++TG+Y+ANRV DKLT + D I+CCRSGSA
Sbjct: 24 PDWESREVSTGTTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSA 83
Query: 78 ADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQELVYSYRDSLTAGIICAGWDRKKGG 137
ADTQA++D V+Y L +EL E PLV++ A LF+E+ Y YR+ L AGII AGWD ++GG
Sbjct: 84 ADTQAVADAVTYQLGFHSIELNEPPLVHTAASLFKEMCYRYREDLMAGIIIAGWDPQEGG 143
Query: 138 QVYCIPLGGMLMRQKMAMGGSGSTYLYGHMDNQFKENMTKKEAM 181
QVY +P+GGM++RQ A+GGSGS+Y+YG++D ++E MTK+E +
Sbjct: 144 QVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYREGMTKEECL 187
>sp|Q60692|PSB6_MOUSE Proteasome subunit beta type-6 OS=Mus musculus GN=Psmb6 PE=1 SV=3
Length = 238
Score = 221 bits (564), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 97/164 (59%), Positives = 132/164 (80%)
Query: 18 PDWLTAKHSCGTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSA 77
PDW + S GTTI+AV+F+GGVV+GADSR++TG+Y+ANRV DKLT + D+I+CCRSGSA
Sbjct: 23 PDWENREVSTGTTIMAVQFNGGVVLGADSRTTTGSYIANRVTDKLTPIHDHIFCCRSGSA 82
Query: 78 ADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQELVYSYRDSLTAGIICAGWDRKKGG 137
ADTQA++D V+Y L +EL E PLV++ A LF+E+ Y YR+ L AGII AGWD ++GG
Sbjct: 83 ADTQAVADAVTYQLGFHSIELNEPPLVHTAASLFKEMCYRYREDLMAGIIIAGWDPQEGG 142
Query: 138 QVYCIPLGGMLMRQKMAMGGSGSTYLYGHMDNQFKENMTKKEAM 181
QVY +P+GGM++RQ A+GGSGS+Y+YG++D ++E MTK E +
Sbjct: 143 QVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYREGMTKDECL 186
>sp|Q55GJ6|PSB6_DICDI Proteasome subunit beta type-6 OS=Dictyostelium discoideum GN=psmB6
PE=1 SV=1
Length = 214
Score = 206 bits (525), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 97/167 (58%), Positives = 130/167 (77%)
Query: 15 VEAPDWLTAKHSCGTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRS 74
+EAP+WL GT+I+AVE+DGGV++GADSR++TGAY+ANRV +K+T + + IYCCRS
Sbjct: 1 MEAPEWLDNAVDLGTSIMAVEYDGGVIMGADSRTTTGAYIANRVTNKITPIHERIYCCRS 60
Query: 75 GSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQELVYSYRDSLTAGIICAGWDRK 134
GSAADTQAISD+V Y L++ EL +EP V + A LFQ L YS +++L AGII AGWD+
Sbjct: 61 GSAADTQAISDYVRYYLEMHTSELCDEPDVKTAASLFQLLCYSNKNNLMAGIIVAGWDKH 120
Query: 135 KGGQVYCIPLGGMLMRQKMAMGGSGSTYLYGHMDNQFKENMTKKEAM 181
+GG VY I LGG +++Q A+GGSGSTY+YG+ D++FK MTK E +
Sbjct: 121 QGGSVYNISLGGSMVKQPFAIGGSGSTYIYGYCDSKFKPKMTKDECI 167
>sp|Q8LD27|PSB6_ARATH Proteasome subunit beta type-6 OS=Arabidopsis thaliana GN=PBA1 PE=1
SV=2
Length = 233
Score = 187 bits (474), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 87/160 (54%), Positives = 118/160 (73%)
Query: 21 LTAKHSCGTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADT 80
L A HS GTTII V ++GGVV+GADSR+STG YVANR +DK+T++TDN+Y CRSGSAAD+
Sbjct: 5 LDAPHSMGTTIIGVTYNGGVVLGADSRTSTGMYVANRASDKITQLTDNVYVCRSGSAADS 64
Query: 81 QAISDFVSYNLDLQRMELGEEPLVYSGAKLFQELVYSYRDSLTAGIICAGWDRKKGGQVY 140
Q +SD+V Y L ++ G+ V A L + L Y+ ++ L G+I GWD+ +GG++Y
Sbjct: 65 QVVSDYVRYFLHQHTIQHGQPATVKVSANLIRMLAYNNKNMLQTGLIVGGWDKYEGGKIY 124
Query: 141 CIPLGGMLMRQKMAMGGSGSTYLYGHMDNQFKENMTKKEA 180
IPLGG ++ Q A+GGSGS+YLYG D +K+NMTK+EA
Sbjct: 125 GIPLGGTVVEQPFAIGGSGSSYLYGFFDQAWKDNMTKEEA 164
>sp|O43063|PSB1_SCHPO Probable proteasome subunit beta type-1 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=pre3 PE=3 SV=1
Length = 226
Score = 186 bits (471), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 83/154 (53%), Positives = 117/154 (75%)
Query: 28 GTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFV 87
GTTI A+ + GV++ ADSR++ GAY+ANRV DKLT++TDNI+CCRSGSAADTQ ++D +
Sbjct: 24 GTTITALRYKDGVILAADSRTTMGAYIANRVTDKLTQLTDNIWCCRSGSAADTQTVADLL 83
Query: 88 SYNLDLQRMELGEEPLVYSGAKLFQELVYSYRDSLTAGIICAGWDRKKGGQVYCIPLGGM 147
Y L + R++ G +P V++ A L E+ Y ++ L+AG+I AG+D K GG VY IPLGG
Sbjct: 84 KYYLSMYRIQFGHDPSVHTAATLASEMCYQNKNMLSAGLIVAGYDEKTGGDVYSIPLGGS 143
Query: 148 LMRQKMAMGGSGSTYLYGHMDNQFKENMTKKEAM 181
L +Q +A+GGSGS ++YG D F+ENMT++EA+
Sbjct: 144 LHKQPLAIGGSGSAFIYGFCDANFRENMTQEEAV 177
>sp|P38624|PSB1_YEAST Proteasome subunit beta type-1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=PRE3 PE=1 SV=2
Length = 215
Score = 184 bits (468), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 89/156 (57%), Positives = 118/156 (75%), Gaps = 1/156 (0%)
Query: 26 SCGTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAISD 85
S GT+I+AV F GV++GADSR++TGAY+ANRV DKLTRV D I+CCRSGSAADTQAI+D
Sbjct: 17 SLGTSIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHDKIWCCRSGSAADTQAIAD 76
Query: 86 FVSYNLDLQRMELGEEPLVYSGAKLFQELVYSYRDSLTAGIICAGWDRKKGGQVYCIPLG 145
V Y+L+L + G P + A +F+EL Y +D+LTAGII AG+D K G+VY IPLG
Sbjct: 77 IVQYHLELYTSQYG-TPSTETAASVFKELCYENKDNLTAGIIVAGYDDKNKGEVYTIPLG 135
Query: 146 GMLMRQKMAMGGSGSTYLYGHMDNQFKENMTKKEAM 181
G + + A+ GSGST++YG+ D F+ENM+K+E +
Sbjct: 136 GSVHKLPYAIAGSGSTFIYGYCDKNFRENMSKEETV 171
>sp|P93395|PSB6_TOBAC Proteasome subunit beta type-6 OS=Nicotiana tabacum PE=2 SV=1
Length = 234
Score = 182 bits (462), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 85/157 (54%), Positives = 115/157 (73%)
Query: 24 KHSCGTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAI 83
HS GTTII V ++GGVV+GADSR+STG YVANR +DK+T++TDN+Y CRSGSAAD+Q +
Sbjct: 9 PHSMGTTIIGVTYNGGVVLGADSRTSTGMYVANRASDKITQLTDNVYVCRSGSAADSQIV 68
Query: 84 SDFVSYNLDLQRMELGEEPLVYSGAKLFQELVYSYRDSLTAGIICAGWDRKKGGQVYCIP 143
SD+V Y L ++LG+ V A L + L Y+ +D L G+I GWD+ +GG++Y IP
Sbjct: 69 SDYVRYFLHQHTIQLGQPATVKVAANLTRLLSYNNKDRLQTGMIIGGWDKYEGGKIYGIP 128
Query: 144 LGGMLMRQKMAMGGSGSTYLYGHMDNQFKENMTKKEA 180
GG ++ Q A+GGSGS+YLYG D +KE MT++EA
Sbjct: 129 PGGTVLEQPFAIGGSGSSYLYGFFDQAWKEGMTQEEA 165
>sp|Q8UW64|PSB9_ORYLA Proteasome subunit beta type-9 OS=Oryzias latipes GN=psmb9 PE=3
SV=1
Length = 217
Score = 181 bits (458), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 83/162 (51%), Positives = 117/162 (72%), Gaps = 1/162 (0%)
Query: 18 PDWLTAKHSCGTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSA 77
P W++ + GTTIIA+EF+GGVV+G+DSR S G V NRV +KL+ + D IYC SGSA
Sbjct: 8 PQWISEEVKTGTTIIAIEFNGGVVLGSDSRVSAGDSVVNRVMNKLSPLHDKIYCALSGSA 67
Query: 78 ADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQELVYSYRDSLTAGIICAGWDRKKGG 137
AD Q I++ V+Y LD+ +E+ E+P V S A L + + Y Y++ L+A +I AGWDR+ GG
Sbjct: 68 ADAQTIAEMVNYQLDVHSLEIDEDPQVRSAATLVKNISYKYKEELSAHLIVAGWDRRDGG 127
Query: 138 QVYCIPLGGMLMRQKMAMGGSGSTYLYGHMDNQFKENMTKKE 179
QV+ LGG+L RQ A+GGSGS+Y+YG +D +++ MTK+E
Sbjct: 128 QVFAT-LGGLLTRQPFAIGGSGSSYVYGFVDAEYRRGMTKEE 168
>sp|Q9PT26|PSB9_ONCMY Proteasome subunit beta type-9 OS=Oncorhynchus mykiss GN=psmb9 PE=2
SV=1
Length = 217
Score = 179 bits (454), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 83/162 (51%), Positives = 119/162 (73%), Gaps = 1/162 (0%)
Query: 18 PDWLTAKHSCGTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSA 77
P WL+ + GTTIIA+EFDGGVV+G+DSR S G V NRV +KL+ + D IYC SGSA
Sbjct: 8 PGWLSEEVKTGTTIIAIEFDGGVVLGSDSRVSAGETVVNRVMNKLSLLHDKIYCALSGSA 67
Query: 78 ADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQELVYSYRDSLTAGIICAGWDRKKGG 137
AD Q I++ V+Y LD+ +E+GE+P V S A L + + Y Y++ L+A +I AGWD++ GG
Sbjct: 68 ADAQTIAEMVNYQLDVHSIEVGEDPQVRSAATLVKNISYKYKEDLSAHLIVAGWDKRGGG 127
Query: 138 QVYCIPLGGMLMRQKMAMGGSGSTYLYGHMDNQFKENMTKKE 179
QVY + L G+L RQ A+GGSGS+Y+YG +D ++++ M+K++
Sbjct: 128 QVY-VTLNGLLSRQPFAVGGSGSSYVYGFVDAEYRKAMSKED 168
>sp|Q9DD33|PSB9_SALSA Proteasome subunit beta type-9 OS=Salmo salar GN=psmb9-a PE=2 SV=1
Length = 217
Score = 179 bits (453), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 83/162 (51%), Positives = 118/162 (72%), Gaps = 1/162 (0%)
Query: 18 PDWLTAKHSCGTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSA 77
P WL+ + GTTIIA+EFDGGVV+G+DSR S G V NRV +KL+ + D IYC SGSA
Sbjct: 8 PGWLSEEVKTGTTIIAIEFDGGVVLGSDSRVSAGETVVNRVMNKLSLLHDKIYCALSGSA 67
Query: 78 ADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQELVYSYRDSLTAGIICAGWDRKKGG 137
AD Q I++ V+Y LD+ +E+GE+P V S A L + + Y Y++ L+A +I AGWD++ GG
Sbjct: 68 ADAQTIAEMVNYQLDVHSIEVGEDPQVRSAATLVKNISYKYKEELSAHLIVAGWDKRGGG 127
Query: 138 QVYCIPLGGMLMRQKMAMGGSGSTYLYGHMDNQFKENMTKKE 179
QVY + L G+L RQ A+GGSGS Y+YG +D ++++ M+K++
Sbjct: 128 QVY-VTLNGLLSRQPFAVGGSGSAYVYGFVDAEYRKAMSKED 168
>sp|Q3SZC2|PSB9_BOVIN Proteasome subunit beta type-9 OS=Bos taurus GN=PSMB9 PE=1 SV=1
Length = 219
Score = 174 bits (442), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 83/152 (54%), Positives = 112/152 (73%), Gaps = 1/152 (0%)
Query: 28 GTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFV 87
GTTI+AVEFDGGVV+G+DSR S G V NRV DKL+ + +IYC SGSAAD QAI+D
Sbjct: 20 GTTIMAVEFDGGVVVGSDSRVSAGEAVVNRVFDKLSPLHQHIYCALSGSAADAQAIADMA 79
Query: 88 SYNLDLQRMELGEEPLVYSGAKLFQELVYSYRDSLTAGIICAGWDRKKGGQVYCIPLGGM 147
+Y L+L MEL E PLV + A + + + Y YR+ L+A ++ AGWD+++GGQVY + GM
Sbjct: 80 AYQLELHGMELEEPPLVLAAANVVRNITYKYREDLSAHLMVAGWDQREGGQVYGT-MSGM 138
Query: 148 LMRQKMAMGGSGSTYLYGHMDNQFKENMTKKE 179
L+RQ A+GGSGSTY+YG++D +K M+ +E
Sbjct: 139 LIRQPFAIGGSGSTYIYGYVDAAYKPGMSPEE 170
>sp|P28065|PSB9_HUMAN Proteasome subunit beta type-9 OS=Homo sapiens GN=PSMB9 PE=1 SV=2
Length = 219
Score = 172 bits (437), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 82/152 (53%), Positives = 112/152 (73%), Gaps = 1/152 (0%)
Query: 28 GTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFV 87
GTTI+AVEFDGGVV+G+DSR S G V NRV DKL+ + + IYC SGSAAD QA++D
Sbjct: 20 GTTIMAVEFDGGVVMGSDSRVSAGEAVVNRVFDKLSPLHERIYCALSGSAADAQAVADMA 79
Query: 88 SYNLDLQRMELGEEPLVYSGAKLFQELVYSYRDSLTAGIICAGWDRKKGGQVYCIPLGGM 147
+Y L+L +EL E PLV + A + + + Y YR+ L+A ++ AGWD+++GGQVY LGGM
Sbjct: 80 AYQLELHGIELEEPPLVLAAANVVRNISYKYREDLSAHLMVAGWDQREGGQVYGT-LGGM 138
Query: 148 LMRQKMAMGGSGSTYLYGHMDNQFKENMTKKE 179
L RQ A+GGSGST++YG++D +K M+ +E
Sbjct: 139 LTRQPFAIGGSGSTFIYGYVDAAYKPGMSPEE 170
>sp|A7KII6|PB6LB_SALSA Proteasome subunit beta type-6-B like protein OS=Salmo salar
GN=psmb6l-b PE=3 SV=1
Length = 217
Score = 166 bits (420), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 75/157 (47%), Positives = 112/157 (71%), Gaps = 1/157 (0%)
Query: 26 SCGTTIIAVEFDGGVVIGADSRSSTG-AYVANRVADKLTRVTDNIYCCRSGSAADTQAIS 84
S GTTI+AV F+GGV+IG+DSR+S G +YV+++ +KL +V D I+CC +GS AD QA++
Sbjct: 14 STGTTILAVTFNGGVIIGSDSRASIGGSYVSSKTINKLIQVHDRIFCCIAGSLADAQAVT 73
Query: 85 DFVSYNLDLQRMELGEEPLVYSGAKLFQELVYSYRDSLTAGIICAGWDRKKGGQVYCIPL 144
+ + +++ PLV + A + +EL Y+ ++ L AG I AGWDRKKG QVY + L
Sbjct: 74 KAAKFQISFHSIQMESPPLVKAAASVLKELCYNNKEELQAGFITAGWDRKKGPQVYTVAL 133
Query: 145 GGMLMRQKMAMGGSGSTYLYGHMDNQFKENMTKKEAM 181
GGML+ Q +GGSGSTY+YG+ D ++K +M+K+E +
Sbjct: 134 GGMLLSQPFTIGGSGSTYIYGYADAKYKPDMSKEECL 170
>sp|A7KE01|PB6LA_SALSA Proteasome subunit beta type-6-A like protein OS=Salmo salar
GN=psmb6l-a PE=3 SV=1
Length = 217
Score = 166 bits (420), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 75/157 (47%), Positives = 112/157 (71%), Gaps = 1/157 (0%)
Query: 26 SCGTTIIAVEFDGGVVIGADSRSSTG-AYVANRVADKLTRVTDNIYCCRSGSAADTQAIS 84
S GTTI+AV F+GGV+IG+DSR+S G +YV+++ +KL +V D I+CC +GS AD QA++
Sbjct: 14 STGTTILAVTFNGGVIIGSDSRASIGGSYVSSKTINKLIQVHDRIFCCIAGSLADAQAVT 73
Query: 85 DFVSYNLDLQRMELGEEPLVYSGAKLFQELVYSYRDSLTAGIICAGWDRKKGGQVYCIPL 144
+ + +++ PLV + A + +EL Y+ ++ L AG I AGWDRKKG QVY + L
Sbjct: 74 KAAKFQISFHSIQMESPPLVKAAASVLKELCYNNKEELQAGFITAGWDRKKGPQVYTVAL 133
Query: 145 GGMLMRQKMAMGGSGSTYLYGHMDNQFKENMTKKEAM 181
GGML+ Q +GGSGSTY+YG+ D ++K +M+K+E +
Sbjct: 134 GGMLLSQPFTIGGSGSTYIYGYADAKYKPDMSKEECL 170
>sp|P28077|PSB9_RAT Proteasome subunit beta type-9 OS=Rattus norvegicus GN=Psmb9 PE=1
SV=2
Length = 219
Score = 164 bits (414), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 88/167 (52%), Positives = 116/167 (69%), Gaps = 1/167 (0%)
Query: 13 GGVEAPDWLTAKHSCGTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCC 72
G A + T + GTTI+AVEFDGGVV+G+DSR S GA V NRV DKL+ + IYC
Sbjct: 5 GAPTAGSFRTGEVHTGTTIMAVEFDGGVVVGSDSRVSAGAAVVNRVFDKLSPLHQRIYCA 64
Query: 73 RSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQELVYSYRDSLTAGIICAGWD 132
SGSAAD QAI+D +Y L+L +EL E PLV + A + + + Y YR+ L A ++ AGWD
Sbjct: 65 LSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAANIVKNISYKYREDLLAHLMVAGWD 124
Query: 133 RKKGGQVYCIPLGGMLMRQKMAMGGSGSTYLYGHMDNQFKENMTKKE 179
+ +GGQVY +GGML+RQ A+GGSGSTY+YG++D +K MT +E
Sbjct: 125 QHEGGQVYGT-MGGMLIRQPFAIGGSGSTYIYGYVDAAYKPGMTPEE 170
>sp|O35521|PSB9_MUSDU Proteasome subunit beta type-9 OS=Mus dunni GN=Psmb9 PE=1 SV=1
Length = 219
Score = 161 bits (408), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 86/167 (51%), Positives = 116/167 (69%), Gaps = 1/167 (0%)
Query: 13 GGVEAPDWLTAKHSCGTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCC 72
G A + T + GTTI+AVEFDGGVV+G+DSR S GA V NRV DKL+ + I+C
Sbjct: 5 GAPTAGSFRTEEVHTGTTIMAVEFDGGVVVGSDSRVSAGAAVVNRVFDKLSPLHQRIFCA 64
Query: 73 RSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQELVYSYRDSLTAGIICAGWD 132
SGSAAD QAI+D +Y L+L +EL E PLV + A + + + Y YR+ L A +I AGWD
Sbjct: 65 LSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAANVVKNISYKYREDLLAHLIVAGWD 124
Query: 133 RKKGGQVYCIPLGGMLMRQKMAMGGSGSTYLYGHMDNQFKENMTKKE 179
+++GGQVY +GGML+RQ +GGSGS+Y+YG++D +K MT +E
Sbjct: 125 QREGGQVYGT-MGGMLIRQPFTIGGSGSSYIYGYVDAAYKPGMTPEE 170
>sp|P28076|PSB9_MOUSE Proteasome subunit beta type-9 OS=Mus musculus GN=Psmb9 PE=1 SV=1
Length = 219
Score = 160 bits (404), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 85/167 (50%), Positives = 115/167 (68%), Gaps = 1/167 (0%)
Query: 13 GGVEAPDWLTAKHSCGTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCC 72
G A + T + GTTI+AVEFDGGVV+G+DSR S G V NRV DKL+ + I+C
Sbjct: 5 GAPTAGSFRTEEVHTGTTIMAVEFDGGVVVGSDSRVSAGTAVVNRVFDKLSPLHQRIFCA 64
Query: 73 RSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQELVYSYRDSLTAGIICAGWD 132
SGSAAD QAI+D +Y L+L +EL E PLV + A + + + Y YR+ L A +I AGWD
Sbjct: 65 LSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAANVVKNISYKYREDLLAHLIVAGWD 124
Query: 133 RKKGGQVYCIPLGGMLMRQKMAMGGSGSTYLYGHMDNQFKENMTKKE 179
+++GGQVY +GGML+RQ +GGSGS+Y+YG++D +K MT +E
Sbjct: 125 QREGGQVYGT-MGGMLIRQPFTIGGSGSSYIYGYVDAAYKPGMTPEE 170
>sp|O35524|PSB9_MUSSI Proteasome subunit beta type-9 OS=Mus spicilegus GN=Psmb9 PE=1 SV=1
Length = 219
Score = 160 bits (404), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 85/167 (50%), Positives = 115/167 (68%), Gaps = 1/167 (0%)
Query: 13 GGVEAPDWLTAKHSCGTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCC 72
G A + T + GTTI+AVEFDGGVV+G+DSR S G V NRV DKL+ + I+C
Sbjct: 5 GAPTAGSFRTEEVHTGTTIMAVEFDGGVVVGSDSRVSAGTAVVNRVFDKLSPLHQRIFCA 64
Query: 73 RSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQELVYSYRDSLTAGIICAGWD 132
SGSAAD QAI+D +Y L+L +EL E PLV + A + + + Y YR+ L A +I AGWD
Sbjct: 65 LSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAANVVKNISYKYREDLLAHLIVAGWD 124
Query: 133 RKKGGQVYCIPLGGMLMRQKMAMGGSGSTYLYGHMDNQFKENMTKKE 179
+++GGQVY +GGML+RQ +GGSGS+Y+YG++D +K MT +E
Sbjct: 125 QREGGQVYGT-MGGMLIRQPFTIGGSGSSYIYGYVDAAYKPGMTPEE 170
>sp|O35523|PSB9_MUSPL Proteasome subunit beta type-9 OS=Mus platythrix GN=Psmb9 PE=1 SV=1
Length = 219
Score = 159 bits (402), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 85/167 (50%), Positives = 115/167 (68%), Gaps = 1/167 (0%)
Query: 13 GGVEAPDWLTAKHSCGTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCC 72
G A + T + GTTI+AVEFDGGVV+G+DSR S G V NRV DKL+ + I+C
Sbjct: 5 GAPTAGSFRTKEVHTGTTIMAVEFDGGVVVGSDSRVSAGEAVVNRVFDKLSPLHQRIFCA 64
Query: 73 RSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQELVYSYRDSLTAGIICAGWD 132
SGSAAD QAI+D +Y L+L +EL E PLV + A + + + Y YR+ L A +I AGWD
Sbjct: 65 LSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAANVVKNISYKYREDLLAHLIVAGWD 124
Query: 133 RKKGGQVYCIPLGGMLMRQKMAMGGSGSTYLYGHMDNQFKENMTKKE 179
+++GGQVY +GGML+RQ +GGSGS+Y+YG++D +K MT +E
Sbjct: 125 QREGGQVYGT-MGGMLIRQPFTIGGSGSSYIYGYVDAAYKPGMTSEE 170
>sp|O35522|PSB9_MUSMB Proteasome subunit beta type-9 OS=Mus musculus bactrianus GN=Psmb9
PE=1 SV=1
Length = 219
Score = 157 bits (398), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 84/167 (50%), Positives = 114/167 (68%), Gaps = 1/167 (0%)
Query: 13 GGVEAPDWLTAKHSCGTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCC 72
G A + T + GTTI+AVEFDGGVV+G+DSR S G V NRV DKL+ + I+C
Sbjct: 5 GAPTAGSFRTEEVHTGTTIMAVEFDGGVVVGSDSRVSAGTAVVNRVFDKLSPLHQRIFCA 64
Query: 73 RSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQELVYSYRDSLTAGIICAGWD 132
SGSAAD QAI+D +Y L+L +EL E PLV + A + + + Y YR+ L A +I AGWD
Sbjct: 65 LSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAANVVKNISYKYREDLLAHLIVAGWD 124
Query: 133 RKKGGQVYCIPLGGMLMRQKMAMGGSGSTYLYGHMDNQFKENMTKKE 179
+++GGQVY +GGML+RQ + GSGS+Y+YG++D +K MT +E
Sbjct: 125 QREGGQVYGT-MGGMLIRQPFTISGSGSSYIYGYVDAAYKPGMTPEE 170
>sp|Q8SR11|PSB1_ENCCU Probable proteasome subunit beta type-1 OS=Encephalitozoon cuniculi
(strain GB-M1) GN=PRE3 PE=1 SV=1
Length = 203
Score = 135 bits (340), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 73/158 (46%), Positives = 104/158 (65%), Gaps = 3/158 (1%)
Query: 24 KHSCGTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAI 83
K GTTIIA+++D GV+IGADSR+S GAYV++RV DKLT++TD I+ CRSGS+ADTQ I
Sbjct: 6 KEMTGTTIIAIKYDDGVLIGADSRTSMGAYVSSRVTDKLTQITDKIFVCRSGSSADTQMI 65
Query: 84 SDFVSYNLDLQRMELGEEPLVYSGAKLFQELVYSYRDSLTAGIICAGWDRKKGGQVYCIP 143
S ++ L + P V A L +++Y SL AG+I AG+D K +V+ I
Sbjct: 66 SSYLRMYLSMYSQLEDSIPQVQRAAALASKIIYE-NPSLLAGLIVAGYDDKP--RVFNIS 122
Query: 144 LGGMLMRQKMAMGGSGSTYLYGHMDNQFKENMTKKEAM 181
LGG L + A+GGSGS ++YG+ D ++ M+ +E +
Sbjct: 123 LGGSLTERDWAIGGSGSAFIYGYCDVNWRSGMSLEEGI 160
>sp|Q7DLS1|PSB7B_ARATH Proteasome subunit beta type-7-B OS=Arabidopsis thaliana GN=PBB2
PE=1 SV=2
Length = 274
Score = 102 bits (253), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 56/168 (33%), Positives = 96/168 (57%), Gaps = 5/168 (2%)
Query: 14 GVEAPDWLTAKHSCGTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCR 73
G++AP +L GTTI+ + F GV++GAD+R++ G VA++ +K+ + NIYCC
Sbjct: 29 GLKAPSFL----KTGTTIVGLIFKDGVILGADTRATEGPIVADKNCEKIHYMAPNIYCCG 84
Query: 74 SGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQELVYSYRDSLTAGIICAGWDR 133
+G+AADT+A++D VS L L R + G + V + L ++ ++SY+ ++A ++ G D
Sbjct: 85 AGTAADTEAVTDMVSSQLRLHRYQTGRDSRVVTALTLLKKHLFSYQGHVSAALVLGGVD- 143
Query: 134 KKGGQVYCIPLGGMLMRQKMAMGGSGSTYLYGHMDNQFKENMTKKEAM 181
G ++ I G A GSGS + ++KE +T+ E +
Sbjct: 144 ITGPHLHTIYPHGSTDTLPFATMGSGSLAAMSVFEAKYKEGLTRDEGI 191
>sp|O23710|PSB7A_ARATH Proteasome subunit beta type-7-A OS=Arabidopsis thaliana GN=PBB1
PE=1 SV=2
Length = 273
Score = 102 bits (253), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 56/168 (33%), Positives = 96/168 (57%), Gaps = 5/168 (2%)
Query: 14 GVEAPDWLTAKHSCGTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCR 73
G++AP +L GTTI+ + F GV++GAD+R++ G VA++ +K+ + NIYCC
Sbjct: 29 GLKAPSFL----KTGTTIVGLIFKDGVILGADTRATEGPIVADKNCEKIHYMAPNIYCCG 84
Query: 74 SGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQELVYSYRDSLTAGIICAGWDR 133
+G+AADT+A++D VS L L R + G + V + L ++ ++SY+ ++A ++ G D
Sbjct: 85 AGTAADTEAVTDMVSSQLRLHRYQTGRDSRVITALTLLKKHLFSYQGHVSAALVLGGVD- 143
Query: 134 KKGGQVYCIPLGGMLMRQKMAMGGSGSTYLYGHMDNQFKENMTKKEAM 181
G ++ I G A GSGS + ++KE +T+ E +
Sbjct: 144 ITGPHLHTIYPHGSTDTLPFATMGSGSLAAMSVFEAKYKEGLTRDEGI 191
>sp|P25043|PSB2_YEAST Proteasome subunit beta type-2 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=PUP1 PE=1 SV=1
Length = 261
Score = 100 bits (248), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 53/156 (33%), Positives = 92/156 (58%), Gaps = 1/156 (0%)
Query: 26 SCGTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAISD 85
S GTTI+ V+F+ GVVI AD+RS+ G VA++ KL R++ I+C +G+AADT+A++
Sbjct: 27 STGTTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQ 86
Query: 86 FVSYNLDLQRMELGEEPLVYSGAKLFQELVYSYRDSLTAGIICAGWDRKKGGQVYCIPLG 145
+ N++L + EP V S ++ ++ ++ Y+ + A +I AG D G ++ I
Sbjct: 87 LIGSNIELHSLYTSREPRVVSALQMLKQHLFKYQGHIGAYLIVAGVD-PTGSHLFSIHAH 145
Query: 146 GMLMRQKMAMGGSGSTYLYGHMDNQFKENMTKKEAM 181
G GSGS +++ +K+++TK+EA+
Sbjct: 146 GSTDVGYYLSLGSGSLAAMAVLESHWKQDLTKEEAI 181
>sp|Q2TBP0|PSB7_BOVIN Proteasome subunit beta type-7 OS=Bos taurus GN=PSMB7 PE=1 SV=1
Length = 277
Score = 93.6 bits (231), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 87/160 (54%), Gaps = 1/160 (0%)
Query: 21 LTAKHSCGTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADT 80
L GTTI V + G+V+GAD+R++ G VA++ K+ ++ NIYCC +G+AADT
Sbjct: 36 LPTARKTGTTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADT 95
Query: 81 QAISDFVSYNLDLQRMELGEEPLVYSGAKLFQELVYSYRDSLTAGIICAGWDRKKGGQVY 140
+ +S NL+L + G P V + ++ +++++ Y+ + A ++ G D G +Y
Sbjct: 96 DMTTQLISSNLELHSLSTGRLPRVVTANRMLKQMLFRYQGYIGAALVLGGVD-VTGPHLY 154
Query: 141 CIPLGGMLMRQKMAMGGSGSTYLYGHMDNQFKENMTKKEA 180
I G + GSGS +++F+ +M ++EA
Sbjct: 155 SIYPHGSTDKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEA 194
>sp|Q9JHW0|PSB7_RAT Proteasome subunit beta type-7 OS=Rattus norvegicus GN=Psmb7 PE=1
SV=1
Length = 277
Score = 93.2 bits (230), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 87/160 (54%), Gaps = 1/160 (0%)
Query: 21 LTAKHSCGTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADT 80
L GTTI V + G+V+GAD+R++ G VA++ K+ ++ NIYCC +G+AADT
Sbjct: 36 LPKARKTGTTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADT 95
Query: 81 QAISDFVSYNLDLQRMELGEEPLVYSGAKLFQELVYSYRDSLTAGIICAGWDRKKGGQVY 140
+ +S NL+L + G P V + ++ +++++ Y+ + A ++ G D G +Y
Sbjct: 96 DMTTQLISSNLELHSLTTGRLPRVVTANRMLKQMLFRYQGYIGAALVLGGVD-VTGPHLY 154
Query: 141 CIPLGGMLMRQKMAMGGSGSTYLYGHMDNQFKENMTKKEA 180
I G + GSGS +++F+ +M ++EA
Sbjct: 155 SIYPHGSTDKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEA 194
>sp|P70195|PSB7_MOUSE Proteasome subunit beta type-7 OS=Mus musculus GN=Psmb7 PE=1 SV=1
Length = 277
Score = 93.2 bits (230), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 87/160 (54%), Gaps = 1/160 (0%)
Query: 21 LTAKHSCGTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADT 80
L GTTI V + G+V+GAD+R++ G VA++ K+ ++ NIYCC +G+AADT
Sbjct: 36 LPKARKTGTTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADT 95
Query: 81 QAISDFVSYNLDLQRMELGEEPLVYSGAKLFQELVYSYRDSLTAGIICAGWDRKKGGQVY 140
+ +S NL+L + G P V + ++ +++++ Y+ + A ++ G D G +Y
Sbjct: 96 DMTTQLISSNLELHSLTTGRLPRVVTANRMLKQMLFRYQGYIGAALVLGGVD-VTGPHLY 154
Query: 141 CIPLGGMLMRQKMAMGGSGSTYLYGHMDNQFKENMTKKEA 180
I G + GSGS +++F+ +M ++EA
Sbjct: 155 SIYPHGSTDKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEA 194
>sp|A1XQU1|PSB7_PIG Proteasome subunit beta type-7 OS=Sus scrofa GN=PSMB7 PE=2 SV=2
Length = 277
Score = 93.2 bits (230), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 86/160 (53%), Gaps = 1/160 (0%)
Query: 21 LTAKHSCGTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADT 80
L GTTI V + G+V+GAD+R++ G VA++ K+ ++ NIYCC +G+AADT
Sbjct: 36 LPTARKTGTTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADT 95
Query: 81 QAISDFVSYNLDLQRMELGEEPLVYSGAKLFQELVYSYRDSLTAGIICAGWDRKKGGQVY 140
+ +S NL+L + G P V + ++ +++++ Y+ + A ++ G D G +Y
Sbjct: 96 DMTTQLISSNLELHSLSTGRLPRVVTANRMLKQMLFRYQGYIGAALVLGGVD-VTGPHLY 154
Query: 141 CIPLGGMLMRQKMAMGGSGSTYLYGHMDNQFKENMTKKEA 180
I G + GSGS +++F+ M ++EA
Sbjct: 155 SIYPHGSTDKLPYVTMGSGSLAAMAVFEDKFRPEMEEEEA 194
>sp|Q99436|PSB7_HUMAN Proteasome subunit beta type-7 OS=Homo sapiens GN=PSMB7 PE=1 SV=1
Length = 277
Score = 93.2 bits (230), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 87/160 (54%), Gaps = 1/160 (0%)
Query: 21 LTAKHSCGTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADT 80
L GTTI V + G+V+GAD+R++ G VA++ K+ ++ NIYCC +G+AADT
Sbjct: 36 LPKVRKTGTTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADT 95
Query: 81 QAISDFVSYNLDLQRMELGEEPLVYSGAKLFQELVYSYRDSLTAGIICAGWDRKKGGQVY 140
+ +S NL+L + G P V + ++ +++++ Y+ + A ++ G D G +Y
Sbjct: 96 DMTTQLISSNLELHSLSTGRLPRVVTANRMLKQMLFRYQGYIGAALVLGGVD-VTGPHLY 154
Query: 141 CIPLGGMLMRQKMAMGGSGSTYLYGHMDNQFKENMTKKEA 180
I G + GSGS +++F+ +M ++EA
Sbjct: 155 SIYPHGSTDKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEA 194
>sp|Q5W416|PSB8_CANFA Proteasome subunit beta type-8 OS=Canis familiaris GN=PSMB8 PE=1
SV=1
Length = 276
Score = 89.0 bits (219), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/154 (33%), Positives = 84/154 (54%), Gaps = 2/154 (1%)
Query: 28 GTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFV 87
GTT +A +F GV++ DSR++ G Y+++ +K+ + ++ SG AAD Q +
Sbjct: 72 GTTTLAFKFQHGVIVAVDSRATAGNYISSSRVNKVIEINPSLLGTMSGCAADCQYWERLL 131
Query: 88 SYNLDLQRMELGEEPLVYSGAKLFQELVYSYRD-SLTAGIICAGWDRKKGGQVYCIPLGG 146
+ L + GE V + +KL +VY YR L+ G + GWD KKG +Y + G
Sbjct: 132 AKECRLYYLRNGERISVSAASKLLSNMVYQYRGMDLSMGSMICGWD-KKGPGLYYVDQNG 190
Query: 147 MLMRQKMAMGGSGSTYLYGHMDNQFKENMTKKEA 180
+ M GSGSTY YG MD+ ++ +++ +EA
Sbjct: 191 TRLSGNMFSTGSGSTYAYGVMDSGYQPSLSPEEA 224
>sp|Q4KM35|PSB10_RAT Proteasome subunit beta type-10 OS=Rattus norvegicus GN=Psmb10 PE=2
SV=1
Length = 273
Score = 88.2 bits (217), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 83/153 (54%), Gaps = 1/153 (0%)
Query: 28 GTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFV 87
GTTI + F GV++GAD+R++ + VA++ +K+ + IYCC +G AADT+ +
Sbjct: 39 GTTIAGLVFRDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADTEMTTRMA 98
Query: 88 SYNLDLQRMELGEEPLVYSGAKLFQELVYSYRDSLTAGIICAGWDRKKGGQVYCIPLGGM 147
+ ++L + G EP V + ++ ++ ++ Y+ + A +I G D G Q+Y + G
Sbjct: 99 ASKMELHALSTGREPRVATVTRILRQTLFRYQGHVGASLIVGGVD-LNGPQLYSVHPHGS 157
Query: 148 LMRQKMAMGGSGSTYLYGHMDNQFKENMTKKEA 180
R GSG ++++F+ NMT + A
Sbjct: 158 YSRLPFTALGSGQDAAVALLEDRFQPNMTLEAA 190
>sp|O23717|PSB5A_ARATH Proteasome subunit beta type-5-A OS=Arabidopsis thaliana GN=PBE1
PE=1 SV=1
Length = 274
Score = 87.8 bits (216), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 54/158 (34%), Positives = 83/158 (52%), Gaps = 2/158 (1%)
Query: 24 KHSCGTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAI 83
KH+ GTT +A F GGV++ ADSR+S G Y++++ K+ + + +G AAD Q
Sbjct: 53 KHAKGTTTLAFIFKGGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFW 112
Query: 84 SDFVSYNLDLQRMELGEEPLVYSGAKLFQELVYSYRD-SLTAGIICAGWDRKKGGQVYCI 142
+ L + V +KL ++YSYR L+ G + AGWD G Y
Sbjct: 113 HRNLGIKCRLHELANKRRISVSGASKLLANMLYSYRGMGLSVGTMIAGWDETGPGLYYVD 172
Query: 143 PLGGMLMRQKMAMGGSGSTYLYGHMDNQFKENMTKKEA 180
GG L + ++ GSGS Y YG +D+ +K +M+ +EA
Sbjct: 173 NEGGRLKGDRFSV-GSGSPYAYGVLDSGYKYDMSVEEA 209
>sp|P40306|PSB10_HUMAN Proteasome subunit beta type-10 OS=Homo sapiens GN=PSMB10 PE=1 SV=1
Length = 273
Score = 87.4 bits (215), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 83/153 (54%), Gaps = 1/153 (0%)
Query: 28 GTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFV 87
GTTI + F GV++GAD+R++ + VA++ +K+ + IYCC +G AAD + + V
Sbjct: 39 GTTIAGLVFQDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADAEMTTRMV 98
Query: 88 SYNLDLQRMELGEEPLVYSGAKLFQELVYSYRDSLTAGIICAGWDRKKGGQVYCIPLGGM 147
+ ++L + G EP V + ++ ++ ++ Y+ + A +I G D G Q+Y + G
Sbjct: 99 ASKMELHALSTGREPRVATVTRILRQTLFRYQGHVGASLIVGGVDL-TGPQLYGVHPHGS 157
Query: 148 LMRQKMAMGGSGSTYLYGHMDNQFKENMTKKEA 180
R GSG ++++F+ NMT + A
Sbjct: 158 YSRLPFTALGSGQDAALAVLEDRFQPNMTLEAA 190
>sp|O35955|PSB10_MOUSE Proteasome subunit beta type-10 OS=Mus musculus GN=Psmb10 PE=1 SV=1
Length = 273
Score = 86.3 bits (212), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 83/153 (54%), Gaps = 1/153 (0%)
Query: 28 GTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFV 87
GTTI + F GV++GAD+R++ + VA++ +K+ + IYCC +G AADT+ +
Sbjct: 39 GTTIAGLVFRDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADTEMTTRMA 98
Query: 88 SYNLDLQRMELGEEPLVYSGAKLFQELVYSYRDSLTAGIICAGWDRKKGGQVYCIPLGGM 147
+ ++L + G EP V + ++ ++ ++ Y+ + A ++ G D G Q+Y + G
Sbjct: 99 ASKMELHALSTGREPRVATVTRILRQTLFRYQGHVGASLVVGGVD-LNGPQLYEVHPHGS 157
Query: 148 LMRQKMAMGGSGSTYLYGHMDNQFKENMTKKEA 180
R GSG ++++F+ NMT + A
Sbjct: 158 YSRLPFTALGSGQGAAVALLEDRFQPNMTLEAA 190
>sp|P28064|PSB8_RAT Proteasome subunit beta type-8 OS=Rattus norvegicus GN=Psmb8 PE=1
SV=3
Length = 276
Score = 85.9 bits (211), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/154 (33%), Positives = 84/154 (54%), Gaps = 2/154 (1%)
Query: 28 GTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFV 87
GTT +A +F GV++ DSR+S G+Y+A +K+ + + SG AAD Q +
Sbjct: 72 GTTTLAFKFQHGVIVAVDSRASAGSYIATIRVNKVIEINPYLLGTMSGCAADCQYWERLL 131
Query: 88 SYNLDLQRMELGEEPLVYSGAKLFQELVYSYRD-SLTAGIICAGWDRKKGGQVYCIPLGG 146
+ L + GE V + +KL ++ YR L+ G + GWD KKG +Y + G
Sbjct: 132 AKECRLYYLRNGERISVSAASKLLSNMMLQYRGMGLSMGSMICGWD-KKGPGLYYVDDNG 190
Query: 147 MLMRQKMAMGGSGSTYLYGHMDNQFKENMTKKEA 180
+ +M GSG+TY YG MD+ ++++++ +EA
Sbjct: 191 TRLSGQMFSTGSGNTYAYGVMDSGYRQDLSPEEA 224
>sp|Q54BC8|PSB5_DICDI Proteasome subunit beta type-5 OS=Dictyostelium discoideum GN=psmB5
PE=1 SV=1
Length = 272
Score = 85.5 bits (210), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 84/165 (50%), Gaps = 4/165 (2%)
Query: 17 APDWLTAKHSCGTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGS 76
AP L H GTT +A + GG+++ DS+S+ G YVA+R K+ +T + +G
Sbjct: 53 APKALEFAH--GTTTLAFVYGGGIIVSVDSKSTQGPYVASRSVKKVIEITPTLLGTMAGG 110
Query: 77 AADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQELVYSYRD-SLTAGIICAGWDRKK 135
AAD + L + E V + +K+ +VYSY+ L+ G + GWD K
Sbjct: 111 AADCSFWERELGRRCRLYELRNKELISVAAASKILANIVYSYKGYGLSMGTMITGWD-KT 169
Query: 136 GGQVYCIPLGGMLMRQKMAMGGSGSTYLYGHMDNQFKENMTKKEA 180
G Q+Y + G + + GSGSTY YG +D FK +M +EA
Sbjct: 170 GPQLYYVDNDGTRLHGQRFSCGSGSTYAYGVLDTGFKWDMNDEEA 214
>sp|Q3T0T1|PSB10_BOVIN Proteasome subunit beta type-10 OS=Bos taurus GN=PSMB10 PE=1 SV=1
Length = 273
Score = 84.7 bits (208), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 83/153 (54%), Gaps = 1/153 (0%)
Query: 28 GTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFV 87
GTTI + F GV++GAD+R++ + VA+++ +K+ + IYCC +G AAD + +
Sbjct: 39 GTTIAGLVFQDGVILGADTRATNDSVVADKICEKIHFIAPKIYCCGAGVAADAEMTTRMA 98
Query: 88 SYNLDLQRMELGEEPLVYSGAKLFQELVYSYRDSLTAGIICAGWDRKKGGQVYCIPLGGM 147
+ N++L + G E V + ++ ++ ++ Y+ + A +I G D G Q+Y + G
Sbjct: 99 ASNMELHALSTGRECRVATVTRMLRQTLFRYQGYVGASLIVGGVD-FTGPQLYSVHPHGS 157
Query: 148 LMRQKMAMGGSGSTYLYGHMDNQFKENMTKKEA 180
R GSG ++++F+ NMT + A
Sbjct: 158 YSRLPFTALGSGQDAAIAVLEDRFQPNMTLEAA 190
>sp|P30656|PSB5_YEAST Proteasome subunit beta type-5 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=PRE2 PE=1 SV=3
Length = 287
Score = 84.0 bits (206), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 86/159 (54%), Gaps = 1/159 (0%)
Query: 24 KHSCGTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAI 83
K + GTT +A F GG+++ DSR++ G +VA++ K+ + + +G AAD Q
Sbjct: 71 KIAHGTTTLAFRFQGGIIVAVDSRATAGNWVASQTVKKVIEINPFLLGTMAGGAADCQFW 130
Query: 84 SDFVSYNLDLQRMELGEEPLVYSGAKLFQELVYSYRDS-LTAGIICAGWDRKKGGQVYCI 142
++ L + E V + +K+ LVY Y+ + L+ G + G+ RK+G +Y +
Sbjct: 131 ETWLGSQCRLHELREKERISVAAASKILSNLVYQYKGAGLSMGTMICGYTRKEGPTIYYV 190
Query: 143 PLGGMLMRQKMAMGGSGSTYLYGHMDNQFKENMTKKEAM 181
G ++ + GSG T+ YG +D+ +K +++ ++A+
Sbjct: 191 DSDGTRLKGDIFCVGSGQTFAYGVLDSNYKWDLSVEDAL 229
>sp|P28063|PSB8_MOUSE Proteasome subunit beta type-8 OS=Mus musculus GN=Psmb8 PE=1 SV=2
Length = 276
Score = 84.0 bits (206), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 85/154 (55%), Gaps = 2/154 (1%)
Query: 28 GTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFV 87
GTT +A +F GV++ DSR++ G+Y+++ +K+ + + SG AAD Q +
Sbjct: 72 GTTTLAFKFQHGVIVAVDSRATAGSYISSLRMNKVIEINPYLLGTMSGCAADCQYWERLL 131
Query: 88 SYNLDLQRMELGEEPLVYSGAKLFQELVYSYRD-SLTAGIICAGWDRKKGGQVYCIPLGG 146
+ L + GE V + +KL ++ YR L+ G + GWD KKG +Y + G
Sbjct: 132 AKECRLYYLRNGERISVSAASKLLSNMMLQYRGMGLSMGSMICGWD-KKGPGLYYVDDNG 190
Query: 147 MLMRQKMAMGGSGSTYLYGHMDNQFKENMTKKEA 180
+ +M GSG+TY YG MD+ ++++++ +EA
Sbjct: 191 TRLSGQMFSTGSGNTYAYGVMDSGYRQDLSPEEA 224
>sp|O24361|PSB5_SPIOL Proteasome subunit beta type-5 OS=Spinacia oleracea PE=2 SV=1
Length = 272
Score = 83.6 bits (205), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 81/158 (51%), Gaps = 2/158 (1%)
Query: 24 KHSCGTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAI 83
K + GTT +A F GV++ ADSR+S G Y++++ K+ + + +G AAD Q
Sbjct: 51 KPAKGTTTLAFIFKHGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFW 110
Query: 84 SDFVSYNLDLQRMELGEEPLVYSGAKLFQELVYSYRD-SLTAGIICAGWDRKKGGQVYCI 142
+ L + V +KL ++Y+YR L+ G + AGWD G Y
Sbjct: 111 HRNLGIKCRLHELANKRRISVTGASKLLANILYNYRGMGLSVGTMIAGWDETGPGLYYVD 170
Query: 143 PLGGMLMRQKMAMGGSGSTYLYGHMDNQFKENMTKKEA 180
GG L + ++ GSGS Y YG +DN +K +MT +EA
Sbjct: 171 SEGGRLKGMRFSV-GSGSPYAYGVLDNGYKYDMTVEEA 207
>sp|Q09841|PSB2_SCHPO Probable proteasome subunit beta type-2 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=pup1 PE=2 SV=1
Length = 267
Score = 83.6 bits (205), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 87/156 (55%), Gaps = 1/156 (0%)
Query: 26 SCGTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAISD 85
S GTTI+ V +V+GAD+R++ G +A++ KL ++ NI+C +G+AADT+ ++
Sbjct: 33 STGTTIVGVIAKDCIVLGADTRATAGPIIADKNCKKLHLISPNIWCAGAGTAADTEFVTS 92
Query: 86 FVSYNLDLQRMELGEEPLVYSGAKLFQELVYSYRDSLTAGIICAGWDRKKGGQVYCIPLG 145
+S N++L + +P V + + ++ ++ Y+ + A ++ G+D KG ++ I
Sbjct: 93 MISSNIELHSLYTNRKPRVVTALTMLKQHLFRYQGHIGAYLVLGGYD-CKGPHLFTIAAH 151
Query: 146 GMLMRQKMAMGGSGSTYLYGHMDNQFKENMTKKEAM 181
G + GSGS ++ +++ ++ + EAM
Sbjct: 152 GSSDKLPYVALGSGSLAAISVLETKYQPDLERHEAM 187
>sp|Q54QR2|PSB7_DICDI Proteasome subunit beta type-7 OS=Dictyostelium discoideum GN=psmB7
PE=3 SV=1
Length = 266
Score = 82.8 bits (203), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 93/155 (60%), Gaps = 1/155 (0%)
Query: 28 GTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFV 87
GTTI+ V + GGVV+GAD+R++ G VA++ +K+ + DNIYCC +G+AADT++ + +
Sbjct: 34 GTTIVGVVYKGGVVLGADTRATEGPIVADKNCEKIHYIADNIYCCGAGTAADTESATALI 93
Query: 88 SYNLDLQRMELGEEPLVYSGAKLFQELVYSYRDSLTAGIICAGWDRKKGGQVYCIPLGGM 147
S L L ++ G++ V + + +++++ Y+ ++A +I G D G ++ I G
Sbjct: 94 SSKLKLHKLSTGKQTRVITALTMLKQMLFKYQGHISAALILGGIDI-NGPSLHTIYPHGS 152
Query: 148 LMRQKMAMGGSGSTYLYGHMDNQFKENMTKKEAMS 182
+ GSGS + ++K +MTK+EA++
Sbjct: 153 TDQLPYVTMGSGSLAAMAVFEAKYKNDMTKEEAIA 187
>sp|P28062|PSB8_HUMAN Proteasome subunit beta type-8 OS=Homo sapiens GN=PSMB8 PE=1 SV=3
Length = 276
Score = 82.4 bits (202), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/154 (33%), Positives = 81/154 (52%), Gaps = 2/154 (1%)
Query: 28 GTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFV 87
GTT +A +F GV+ DSR+S G+Y++ +K+ + + SG AAD Q +
Sbjct: 72 GTTTLAFKFQHGVIAAVDSRASAGSYISALRVNKVIEINPYLLGTMSGCAADCQYWERLL 131
Query: 88 SYNLDLQRMELGEEPLVYSGAKLFQELVYSYRD-SLTAGIICAGWDRKKGGQVYCIPLGG 146
+ L + GE V + +KL ++ YR L+ G + GWD KKG +Y + G
Sbjct: 132 AKECRLYYLRNGERISVSAASKLLSNMMCQYRGMGLSMGSMICGWD-KKGPGLYYVDEHG 190
Query: 147 MLMRQKMAMGGSGSTYLYGHMDNQFKENMTKKEA 180
+ M GSG+TY YG MD+ ++ N++ +EA
Sbjct: 191 TRLSGNMFSTGSGNTYAYGVMDSGYRPNLSPEEA 224
>sp|Q9LIP2|PSB5B_ARATH Proteasome subunit beta type-5-B OS=Arabidopsis thaliana GN=PBE2
PE=1 SV=1
Length = 273
Score = 80.9 bits (198), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 52/158 (32%), Positives = 81/158 (51%), Gaps = 2/158 (1%)
Query: 24 KHSCGTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAI 83
K + GTT +A F GV++ ADSR+S G Y++++ K+ + + +G AAD Q
Sbjct: 53 KPAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFW 112
Query: 84 SDFVSYNLDLQRMELGEEPLVYSGAKLFQELVYSYRD-SLTAGIICAGWDRKKGGQVYCI 142
+ L + V +KL ++YSYR L+ G + AGWD G Y
Sbjct: 113 HRNLGIKCRLHELANKRRISVSGASKLLANMLYSYRGMGLSVGTMIAGWDETGPGLYYVD 172
Query: 143 PLGGMLMRQKMAMGGSGSTYLYGHMDNQFKENMTKKEA 180
GG L + ++ GSGS Y YG +D+ +K +M+ +EA
Sbjct: 173 NEGGRLKGDRFSV-GSGSPYAYGVLDSGYKFDMSVEEA 209
>sp|P34065|PSB5_CHICK Proteasome subunit beta type-5 (Fragment) OS=Gallus gallus GN=PSMB5
PE=2 SV=2
Length = 256
Score = 78.2 bits (191), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 80/155 (51%), Gaps = 2/155 (1%)
Query: 28 GTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFV 87
GTT +A +F GVV+ DSR++ G+Y+A++ K+ + ++ +G AAD +
Sbjct: 55 GTTTLAFKFAHGVVVAVDSRATAGSYIASQTVQKVIEINPSLLGTMAGGAADCSFWERLL 114
Query: 88 SYNLDLQRMELGEEPLVYSGAKLFQELVYSYRD-SLTAGIICAGWDRKKGGQVYCIPLGG 146
+ + + E V + +KL +VY Y+ L+ G + GWD++ G Y G
Sbjct: 115 ARQCRVYELRNKEPISVAAASKLLANMVYQYKGMGLSMGTMICGWDKRGPGLYYVDSEGT 174
Query: 147 MLMRQKMAMGGSGSTYLYGHMDNQFKENMTKKEAM 181
+ + A+ GSGS+Y YG +D + +M EA+
Sbjct: 175 RIPGEAFAV-GSGSSYAYGVLDGGRRPDMATDEAL 208
>sp|Q32KL2|PSB5_BOVIN Proteasome subunit beta type-5 OS=Bos taurus GN=PSMB5 PE=1 SV=1
Length = 263
Score = 77.4 bits (189), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 83/172 (48%), Gaps = 7/172 (4%)
Query: 15 VEAPDWLTAKHS-----CGTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNI 69
+ AP W + GTT +A +F GV++ ADSR++ GAY+A++ K+ + +
Sbjct: 41 LAAPSWGVPEEPRIEILHGTTTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYL 100
Query: 70 YCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQELVYSYRD-SLTAGIIC 128
+G AAD ++ + + E V + +KL +VY Y+ L+ G +
Sbjct: 101 LGTMAGGAADCSFWERLLARQCRIYELRNKERISVAAASKLLANMVYQYKGMGLSMGTMI 160
Query: 129 AGWDRKKGGQVYCIPLGGMLMRQKMAMGGSGSTYLYGHMDNQFKENMTKKEA 180
GWD++ G Y G + ++ GSGS Y YG MD + ++ +EA
Sbjct: 161 CGWDKRGPGLYYVDSEGNRISGATFSV-GSGSVYAYGVMDRGYSYDLEVEEA 211
>sp|O55234|PSB5_MOUSE Proteasome subunit beta type-5 OS=Mus musculus GN=Psmb5 PE=1 SV=3
Length = 264
Score = 76.6 bits (187), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 83/172 (48%), Gaps = 7/172 (4%)
Query: 15 VEAPDWLTAKHS-----CGTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNI 69
+ AP W + GTT +A +F GV++ ADSR++ GAY+A++ K+ + +
Sbjct: 41 LAAPSWGVPEEPRIEMLHGTTTLAFKFLHGVIVAADSRATAGAYIASQTVKKVIEINPYL 100
Query: 70 YCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQELVYSYRD-SLTAGIIC 128
+G AAD ++ + + E V + +KL +VY Y+ L+ G +
Sbjct: 101 LGTMAGGAADCSFWERLLARQCRIYELRNKERISVAAASKLLANMVYQYKGMGLSMGTMI 160
Query: 129 AGWDRKKGGQVYCIPLGGMLMRQKMAMGGSGSTYLYGHMDNQFKENMTKKEA 180
GWD++ G Y G + ++ GSGS Y YG MD + ++ +EA
Sbjct: 161 CGWDKRGPGLYYVDSEGNRISGTAFSV-GSGSVYAYGVMDRGYSYDLKVEEA 211
>sp|Q3T112|PSB8_BOVIN Proteasome subunit beta type-8 OS=Bos taurus GN=PSMB8 PE=1 SV=2
Length = 276
Score = 76.6 bits (187), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 80/154 (51%), Gaps = 2/154 (1%)
Query: 28 GTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFV 87
GTT +A +F GV++ DSR+S G Y+A +K+ + + SG AAD +
Sbjct: 72 GTTTLAFKFQHGVIVAVDSRASAGNYIATLKVNKVIEINPYLLGTMSGCAADCLYWERLL 131
Query: 88 SYNLDLQRMELGEEPLVYSGAKLFQELVYSYRD-SLTAGIICAGWDRKKGGQVYCIPLGG 146
+ L + GE V + +KL ++ YR L+ G + GWD KKG +Y + G
Sbjct: 132 AKECRLYYLRNGERISVSAASKLLSNMMCQYRGMGLSMGSMICGWD-KKGPGLYYVDENG 190
Query: 147 MLMRQKMAMGGSGSTYLYGHMDNQFKENMTKKEA 180
+ M GSG+++ YG MD+ ++ +++ +EA
Sbjct: 191 TRLSGNMFSTGSGNSHAYGVMDSGYRPDLSIEEA 224
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.133 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,948,648
Number of Sequences: 539616
Number of extensions: 2841928
Number of successful extensions: 7088
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 313
Number of HSP's successfully gapped in prelim test: 179
Number of HSP's that attempted gapping in prelim test: 6594
Number of HSP's gapped (non-prelim): 492
length of query: 184
length of database: 191,569,459
effective HSP length: 110
effective length of query: 74
effective length of database: 132,211,699
effective search space: 9783665726
effective search space used: 9783665726
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)