Query psy2074
Match_columns 184
No_of_seqs 130 out of 1038
Neff 8.4
Searched_HMMs 46136
Date Fri Aug 16 23:39:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2074.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2074hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0176|consensus 100.0 3.2E-52 6.9E-57 311.0 12.1 179 3-183 9-197 (241)
2 cd03755 proteasome_alpha_type_ 100.0 4.2E-51 9E-56 319.0 17.9 180 4-184 3-187 (207)
3 cd03751 proteasome_alpha_type_ 100.0 8.7E-51 1.9E-55 318.1 17.5 178 4-183 6-188 (212)
4 cd03752 proteasome_alpha_type_ 100.0 9.5E-51 2.1E-55 318.3 17.5 179 5-183 6-189 (213)
5 cd03750 proteasome_alpha_type_ 100.0 2.7E-50 5.9E-55 318.5 17.5 179 4-184 3-186 (227)
6 cd03753 proteasome_alpha_type_ 100.0 1.2E-49 2.7E-54 312.0 17.4 178 5-184 4-191 (213)
7 PTZ00246 proteasome subunit al 100.0 2E-49 4.3E-54 318.2 17.8 181 4-184 7-192 (253)
8 cd03756 proteasome_alpha_arche 100.0 2.7E-49 5.8E-54 309.7 17.9 181 2-184 2-187 (211)
9 cd03749 proteasome_alpha_type_ 100.0 3.2E-49 7E-54 309.2 17.8 176 4-183 3-185 (211)
10 cd03754 proteasome_alpha_type_ 100.0 3E-49 6.5E-54 310.2 17.4 181 2-183 2-192 (215)
11 COG0638 PRE1 20S proteasome, a 100.0 4.2E-49 9.1E-54 312.8 18.1 180 3-183 4-187 (236)
12 TIGR03633 arc_protsome_A prote 100.0 3.8E-49 8.2E-54 311.4 17.5 180 3-184 4-188 (224)
13 PRK03996 proteasome subunit al 100.0 9.7E-49 2.1E-53 312.1 17.4 181 2-184 10-195 (241)
14 cd01911 proteasome_alpha prote 100.0 8.7E-49 1.9E-53 306.3 16.8 180 4-184 3-187 (209)
15 KOG0184|consensus 100.0 1.9E-44 4.1E-49 273.5 15.1 176 5-182 11-191 (254)
16 KOG0183|consensus 100.0 2.5E-45 5.5E-50 277.0 9.9 178 5-183 7-191 (249)
17 cd03759 proteasome_beta_type_3 100.0 2.5E-43 5.4E-48 272.8 20.3 158 27-184 2-161 (195)
18 cd03761 proteasome_beta_type_5 100.0 5.2E-43 1.1E-47 269.6 20.4 155 29-184 1-156 (188)
19 cd03758 proteasome_beta_type_2 100.0 1.9E-42 4E-47 267.5 20.6 155 29-183 2-159 (193)
20 KOG0178|consensus 100.0 7.9E-44 1.7E-48 268.3 11.6 177 7-183 10-192 (249)
21 cd03757 proteasome_beta_type_1 100.0 1.6E-42 3.4E-47 271.6 19.4 160 25-184 5-174 (212)
22 cd03760 proteasome_beta_type_4 100.0 4.8E-42 1.1E-46 266.0 19.9 158 27-184 1-164 (197)
23 cd03762 proteasome_beta_type_6 100.0 9.1E-42 2E-46 262.6 20.3 156 29-184 1-156 (188)
24 TIGR03634 arc_protsome_B prote 100.0 1.8E-41 3.8E-46 260.3 20.4 156 28-184 1-157 (185)
25 cd03763 proteasome_beta_type_7 100.0 2.8E-41 6.1E-46 260.1 20.4 154 29-183 1-154 (189)
26 PTZ00488 Proteasome subunit be 100.0 3.4E-41 7.3E-46 269.0 20.7 160 24-184 35-195 (247)
27 KOG0181|consensus 100.0 6.6E-43 1.4E-47 260.5 9.4 177 4-182 8-189 (233)
28 TIGR03690 20S_bact_beta protea 100.0 6.8E-41 1.5E-45 263.5 20.6 157 27-183 1-163 (219)
29 cd03764 proteasome_beta_archea 100.0 9.7E-41 2.1E-45 256.9 20.4 155 29-184 1-156 (188)
30 cd01912 proteasome_beta protea 100.0 1.7E-40 3.6E-45 255.5 20.4 156 29-184 1-157 (189)
31 TIGR03691 20S_bact_alpha prote 100.0 3.4E-40 7.3E-45 260.5 17.1 157 19-183 18-181 (228)
32 cd01906 proteasome_protease_Hs 100.0 2.2E-39 4.7E-44 247.5 19.7 156 29-184 1-159 (182)
33 KOG0863|consensus 100.0 1.6E-40 3.4E-45 253.4 11.9 178 1-182 1-189 (264)
34 PF00227 Proteasome: Proteasom 100.0 2.9E-39 6.3E-44 248.4 18.5 159 25-183 1-166 (190)
35 cd03765 proteasome_beta_bacter 100.0 1E-38 2.2E-43 252.6 19.0 154 29-184 1-174 (236)
36 KOG0182|consensus 100.0 1.6E-38 3.5E-43 239.7 14.1 177 6-183 13-197 (246)
37 KOG0175|consensus 100.0 3.7E-35 8E-40 227.1 12.7 158 25-183 68-226 (285)
38 KOG0179|consensus 100.0 1.6E-34 3.6E-39 217.7 14.7 159 25-183 26-196 (235)
39 KOG0173|consensus 100.0 1.4E-34 3.1E-39 223.3 14.1 163 20-183 29-191 (271)
40 KOG0174|consensus 100.0 1.2E-34 2.6E-39 216.2 12.0 160 24-183 15-174 (224)
41 KOG0177|consensus 100.0 1.7E-34 3.8E-39 214.5 12.7 156 29-184 2-160 (200)
42 KOG0180|consensus 100.0 8.2E-34 1.8E-38 208.1 15.1 159 25-183 5-165 (204)
43 PRK05456 ATP-dependent proteas 100.0 3.4E-31 7.4E-36 200.4 16.2 143 28-183 1-148 (172)
44 cd01901 Ntn_hydrolase The Ntn 100.0 2E-30 4.4E-35 192.7 19.4 155 29-184 1-158 (164)
45 cd01913 protease_HslV Protease 100.0 2.7E-30 5.9E-35 194.4 17.2 142 29-180 1-147 (171)
46 KOG0185|consensus 100.0 2.5E-30 5.4E-35 198.0 10.8 168 17-184 30-204 (256)
47 TIGR03692 ATP_dep_HslV ATP-dep 100.0 3.4E-29 7.4E-34 188.5 16.4 141 29-179 1-146 (171)
48 COG3484 Predicted proteasome-t 99.5 1E-12 2.2E-17 99.7 11.5 154 28-183 1-174 (255)
49 COG5405 HslV ATP-dependent pro 99.4 1.5E-12 3.2E-17 95.5 10.6 145 27-181 3-152 (178)
50 PF10584 Proteasome_A_N: Prote 98.5 1.2E-08 2.6E-13 51.0 -1.3 21 4-24 3-23 (23)
51 PF09894 DUF2121: Uncharacteri 94.0 1.6 3.5E-05 33.5 10.9 124 28-184 1-154 (194)
52 KOG3361|consensus 90.6 0.33 7.2E-06 35.0 3.2 44 140-183 71-114 (157)
53 COG1754 Uncharacterized C-term 55.1 8.9 0.00019 31.4 2.0 54 128-184 77-133 (298)
54 cd06404 PB1_aPKC PB1 domain is 44.3 64 0.0014 21.4 4.4 41 99-158 17-57 (83)
55 PF04539 Sigma70_r3: Sigma-70 42.5 57 0.0012 20.5 4.1 28 85-112 4-31 (78)
56 COG4079 Uncharacterized protei 42.1 21 0.00045 28.7 2.1 125 28-183 1-154 (293)
57 PF11211 DUF2997: Protein of u 41.3 36 0.00079 20.0 2.6 32 140-171 3-34 (48)
58 PF12481 DUF3700: Aluminium in 38.4 2E+02 0.0044 22.8 10.2 51 29-85 43-93 (228)
59 COG4537 ComGC Competence prote 33.2 86 0.0019 21.6 3.8 27 81-107 50-77 (107)
60 COG5469 Predicted metal-bindin 29.6 16 0.00034 26.6 -0.3 57 77-133 38-95 (143)
61 PF01726 LexA_DNA_bind: LexA D 26.5 1.4E+02 0.0031 18.5 3.8 21 92-112 16-36 (65)
62 KOG0083|consensus 26.3 81 0.0018 23.2 2.9 39 26-68 7-45 (192)
63 PF00220 Hormone_4: Neurohypop 26.1 32 0.0007 13.0 0.4 8 6-13 2-9 (9)
64 PRK14065 exodeoxyribonuclease 24.9 73 0.0016 21.2 2.2 24 160-183 31-54 (86)
65 PF15643 Tox-PL-2: Papain fold 24.7 2.4E+02 0.0052 19.4 5.9 74 101-182 18-96 (100)
66 PRK11325 scaffold protein; Pro 23.0 1.3E+02 0.0028 21.4 3.5 47 137-183 41-88 (127)
67 TIGR02261 benz_CoA_red_D benzo 22.8 1.2E+02 0.0025 24.7 3.6 49 124-180 100-151 (262)
68 PF13066 DUF3929: Protein of u 22.8 1.2E+02 0.0025 18.4 2.6 22 22-43 39-60 (65)
69 PF01242 PTPS: 6-pyruvoyl tetr 22.7 1.2E+02 0.0026 21.1 3.3 46 74-119 43-98 (123)
70 PF09862 DUF2089: Protein of u 22.6 58 0.0013 23.0 1.5 24 161-184 89-112 (113)
71 PF14593 PH_3: PH domain; PDB: 22.5 80 0.0017 21.8 2.2 16 135-150 36-51 (104)
72 PF08383 Maf_N: Maf N-terminal 22.4 44 0.00096 18.3 0.7 11 174-184 22-32 (35)
73 PF05113 DUF693: Protein of un 22.2 2.3E+02 0.0049 23.4 5.0 57 124-183 97-156 (314)
74 PHA02762 hypothetical protein; 21.8 1.8E+02 0.004 17.6 3.3 24 122-145 25-48 (62)
75 COG0822 IscU NifU homolog invo 21.5 1.2E+02 0.0026 22.4 3.1 46 137-183 43-89 (150)
76 PF14688 DUF4461: Domain of un 21.1 2.2E+02 0.0047 23.7 4.9 49 96-152 258-311 (313)
77 KOG1930|consensus 20.4 33 0.00071 29.8 -0.1 23 162-184 206-228 (483)
No 1
>KOG0176|consensus
Probab=100.00 E-value=3.2e-52 Score=311.05 Aligned_cols=179 Identities=22% Similarity=0.351 Sum_probs=170.9
Q ss_pred cccccccccCCCCCCCccccccccCCceEEEEEeCCeEEEEEcCccccCceeeecCCCceEEecCeEEEEecCChHHHHH
Q psy2074 3 NKDYNVNAYHGGVEAPDWLTAKHSCGTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQA 82 (184)
Q Consensus 3 ~~~~~~~~~~G~l~qveya~~~~~~g~t~igi~~~dgVvla~d~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~ 82 (184)
...+++++|+|||||||||.+|++.|+|.|||+.++|||||+++|+++ .++.+++..||++|++||+|++||+.+|++.
T Consensus 9 drgVNTfSpEGRlfQVEYaieAikLGsTaIGv~TkEgVvL~vEKritS-pLm~p~sveKi~eid~HIgca~SGl~aDarT 87 (241)
T KOG0176|consen 9 DRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGVKTKEGVVLAVEKRITS-PLMEPSSVEKIVEIDDHIGCAMSGLIADART 87 (241)
T ss_pred cccccccCCCceeeehhhHHHHHhcCCceeeeeccceEEEEEeccccC-cccCchhhhhheehhhceeeeccccccchHH
Confidence 456788999999999999999999999999999999999999999998 7789999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHhc----------CCCcceeeEEEEEeCCCCeEEEEEcCCCceeecC
Q psy2074 83 ISDFVSYNLDLQRMELGEEPLVYSGAKLFQELVYSY----------RDSLTAGIICAGWDRKKGGQVYCIPLGGMLMRQK 152 (184)
Q Consensus 83 l~~~l~~~~~~~~~~~~~~~~~~~la~~l~~~l~~~----------r~p~~~s~llaG~D~~~~~~Ly~idp~G~~~~~~ 152 (184)
++++.|.+|++|++.++++|+++.+.+.++++-..+ +|||||++|+||+|+ +||+||+.||+|++.+++
T Consensus 88 lve~arv~~qnh~f~Y~e~i~VEs~tq~v~~LaLrFGe~~~~~~~msRPFGValliAG~D~-~gpqL~h~dPSGtf~~~~ 166 (241)
T KOG0176|consen 88 LVERARVETQNHWFTYGEPISVESLTQAVSDLALRFGEGDDEEAIMSRPFGVALLIAGHDE-TGPQLYHLDPSGTFIRYK 166 (241)
T ss_pred HHHHHHHHhhhceeecCCcccHHHHHHHHHHHHhHhCCCcchhhhhcCCcceEEEEeeccC-CCceEEEeCCCCceEEec
Confidence 999999999999999999999999999999986443 469999999999997 899999999999999999
Q ss_pred eEEEecCHHhHHHHHhccCCCCCCHHHHhhc
Q psy2074 153 MAMGGSGSTYLYGHMDNQFKENMTKKEAMST 183 (184)
Q Consensus 153 ~~a~G~g~~~~~~~Le~~~~~~~s~eea~~l 183 (184)
+-|||+|++-+.+.|++.|+++|+++||+++
T Consensus 167 AKAIGSgsEga~~~L~~e~~~~ltL~ea~~~ 197 (241)
T KOG0176|consen 167 AKAIGSGSEGAESSLQEEYHKDLTLKEAEKI 197 (241)
T ss_pred ceeccccchHHHHHHHHHHhhcccHHHHHHH
Confidence 9999999999999999999999999999875
No 2
>cd03755 proteasome_alpha_type_7 proteasome_alpha_type_7. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=4.2e-51 Score=319.02 Aligned_cols=180 Identities=17% Similarity=0.245 Sum_probs=170.1
Q ss_pred ccccccccCCCCCCCccccccccCCceEEEEEeCCeEEEEEcCccccCceeeecCCCceEEecCeEEEEecCChHHHHHH
Q psy2074 4 KDYNVNAYHGGVEAPDWLTAKHSCGTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAI 83 (184)
Q Consensus 4 ~~~~~~~~~G~l~qveya~~~~~~g~t~igi~~~dgVvla~d~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l 83 (184)
.+.+.++|+||++|||||++|+++|+|+|||+++||||||+|+|.+. .++.+++.+||++|++|++|++||+.+|++.+
T Consensus 3 ~~~~~fsp~Gr~~Qveya~~av~~G~t~Igik~~dgVvlaad~~~~~-~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l 81 (207)
T cd03755 3 RAITVFSPDGHLFQVEYAQEAVRKGTTAVGVRGKDCVVLGVEKKSVA-KLQDPRTVRKICMLDDHVCLAFAGLTADARVL 81 (207)
T ss_pred CCCceECCCCeEeHHHHHHHHHHcCCCEEEEEeCCEEEEEEecCCCC-cccCCCccCcEEEECCCEEEEEecchhhHHHH
Confidence 46788999999999999999999999999999999999999999876 46666789999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHhcC-----CCcceeeEEEEEeCCCCeEEEEEcCCCceeecCeEEEec
Q psy2074 84 SDFVSYNLDLQRMELGEEPLVYSGAKLFQELVYSYR-----DSLTAGIICAGWDRKKGGQVYCIPLGGMLMRQKMAMGGS 158 (184)
Q Consensus 84 ~~~l~~~~~~~~~~~~~~~~~~~la~~l~~~l~~~r-----~p~~~s~llaG~D~~~~~~Ly~idp~G~~~~~~~~a~G~ 158 (184)
.++++.+++.|++.++++|+++.+++.+++++|+++ +|+++++||+|||++++|+||.+||+|++.+++++|+|+
T Consensus 82 ~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~~~~y~~~~~~rP~~vs~ii~G~D~~~~p~Ly~iD~~G~~~~~~~~a~G~ 161 (207)
T cd03755 82 INRARLECQSHRLTVEDPVTVEYITRYIAGLQQRYTQSGGVRPFGISTLIVGFDPDGTPRLYQTDPSGTYSAWKANAIGR 161 (207)
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcccCcccceeEEEEEEEeCCCCeEEEEECCCcCEEcceEEEECC
Confidence 999999999999999999999999999999996653 499999999999986799999999999999999999999
Q ss_pred CHHhHHHHHhccCCCCCCHHHHhhcC
Q psy2074 159 GSTYLYGHMDNQFKENMTKKEAMSTF 184 (184)
Q Consensus 159 g~~~~~~~Le~~~~~~~s~eea~~l~ 184 (184)
++++++++||+.|+++||.|||++++
T Consensus 162 gs~~~~~~Le~~~~~~ms~eeai~l~ 187 (207)
T cd03755 162 NSKTVREFLEKNYKEEMTRDDTIKLA 187 (207)
T ss_pred CCHHHHHHHHhhccCCCCHHHHHHHH
Confidence 99999999999999999999999863
No 3
>cd03751 proteasome_alpha_type_3 proteasome_alpha_type_3. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=8.7e-51 Score=318.14 Aligned_cols=178 Identities=16% Similarity=0.166 Sum_probs=167.7
Q ss_pred ccccccccCCCCCCCccccccccCCceEEEEEeCCeEEEEEcCccccCceeeecCCCceEEecCeEEEEecCChHHHHHH
Q psy2074 4 KDYNVNAYHGGVEAPDWLTAKHSCGTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAI 83 (184)
Q Consensus 4 ~~~~~~~~~G~l~qveya~~~~~~g~t~igi~~~dgVvla~d~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l 83 (184)
.+-+.++|+||++|||||++|+++|+|+|||+++||||||+|+|.++ .+...++.+||++|++|+++++||+.+|++.+
T Consensus 6 ~~~t~fsp~Grl~Qveya~~a~~~G~tvIgik~kdgVvla~d~r~~~-~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l 84 (212)
T cd03751 6 LSASTFSPDGRVFQVEYANKAVENSGTAIGIRCKDGVVLAVEKLVTS-KLYEPGSNKRIFNVDRHIGIAVAGLLADGRHL 84 (212)
T ss_pred CCCceECCCCcchHHHHHHHHHhcCCCEEEEEeCCEEEEEEEccccc-cccCcchhcceeEecCcEEEEEEEChHhHHHH
Confidence 34567899999999999999999999999999999999999999986 55566788999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHhc-----CCCcceeeEEEEEeCCCCeEEEEEcCCCceeecCeEEEec
Q psy2074 84 SDFVSYNLDLQRMELGEEPLVYSGAKLFQELVYSY-----RDSLTAGIICAGWDRKKGGQVYCIPLGGMLMRQKMAMGGS 158 (184)
Q Consensus 84 ~~~l~~~~~~~~~~~~~~~~~~~la~~l~~~l~~~-----r~p~~~s~llaG~D~~~~~~Ly~idp~G~~~~~~~~a~G~ 158 (184)
+++++.+++.|++.++++++++.+++.++++++.+ ++|+++++||+|||+ +||+||.+||+|++.+++++|+|+
T Consensus 85 ~~~~r~~~~~y~~~~~~~~~v~~la~~ls~~~~~~t~~~~~rP~~vs~li~G~D~-~gp~Ly~~D~~Gs~~~~~~~a~G~ 163 (212)
T cd03751 85 VSRAREEAENYRDNYGTPIPVKVLADRVAMYMHAYTLYSSVRPFGCSVLLGGYDS-DGPQLYMIEPSGVSYGYFGCAIGK 163 (212)
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhccCCCcCCceEEEEEEEEeC-CcCEEEEECCCCCEEeeEEEEECC
Confidence 99999999999999999999999999999987664 359999999999996 689999999999999999999999
Q ss_pred CHHhHHHHHhccCCCCCCHHHHhhc
Q psy2074 159 GSTYLYGHMDNQFKENMTKKEAMST 183 (184)
Q Consensus 159 g~~~~~~~Le~~~~~~~s~eea~~l 183 (184)
++.+++++||+.|+++||+|||+++
T Consensus 164 g~~~a~~~Lek~~~~dms~eeai~l 188 (212)
T cd03751 164 GKQAAKTELEKLKFSELTCREAVKE 188 (212)
T ss_pred CCHHHHHHHHHhccCCCCHHHHHHH
Confidence 9999999999999999999999976
No 4
>cd03752 proteasome_alpha_type_4 proteasome_alpha_type_4. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=9.5e-51 Score=318.28 Aligned_cols=179 Identities=17% Similarity=0.262 Sum_probs=169.8
Q ss_pred cccccccCCCCCCCccccccccCCceEEEEEeCCeEEEEEcCccccCceeeecCCCceEEecCeEEEEecCChHHHHHHH
Q psy2074 5 DYNVNAYHGGVEAPDWLTAKHSCGTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAIS 84 (184)
Q Consensus 5 ~~~~~~~~G~l~qveya~~~~~~g~t~igi~~~dgVvla~d~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~ 84 (184)
+-+.++|+||++|||||.+|+++|+|+|||+++||||||+|+|.+.+.++.+++.+||++|+++++|++||+.+|++.+.
T Consensus 6 ~~~~fsp~Grl~Qveya~~a~~~G~t~igi~~~dgVvla~d~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~ 85 (213)
T cd03752 6 RTTIFSPEGRLYQVEYAMEAISHAGTCLGILAKDGIVLAAEKKVTSKLLDQSFSSEKIYKIDDHIACAVAGITSDANILI 85 (213)
T ss_pred CCceECCCCEEhHHHhHHHHHhcCCCEEEEEeCCEEEEEEEeccCCcccCCCcCcceEEEecCCEEEEEecChHhHHHHH
Confidence 44678999999999999999999999999999999999999999987776666999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHhc-----CCCcceeeEEEEEeCCCCeEEEEEcCCCceeecCeEEEecC
Q psy2074 85 DFVSYNLDLQRMELGEEPLVYSGAKLFQELVYSY-----RDSLTAGIICAGWDRKKGGQVYCIPLGGMLMRQKMAMGGSG 159 (184)
Q Consensus 85 ~~l~~~~~~~~~~~~~~~~~~~la~~l~~~l~~~-----r~p~~~s~llaG~D~~~~~~Ly~idp~G~~~~~~~~a~G~g 159 (184)
++++.+++.|++.++++|+++.+++.++..++.+ .|||++++||+|||++.||+||.+||+|++.+++++|+|++
T Consensus 86 ~~~r~~~~~~~~~~~~~i~v~~la~~ls~~~~~~t~~~~~RP~~v~~li~G~D~~~g~~ly~~d~~G~~~~~~~~a~G~g 165 (213)
T cd03752 86 NYARLIAQRYLYSYQEPIPVEQLVQRLCDIKQGYTQYGGLRPFGVSFLYAGWDKHYGFQLYQSDPSGNYSGWKATAIGNN 165 (213)
T ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcCCCcccceeEEEEEEEeCCCCCEEEEECCCCCeeeeeEEEECCC
Confidence 9999999999999999999999999999987654 35999999999999767999999999999999999999999
Q ss_pred HHhHHHHHhccCCCCCCHHHHhhc
Q psy2074 160 STYLYGHMDNQFKENMTKKEAMST 183 (184)
Q Consensus 160 ~~~~~~~Le~~~~~~~s~eea~~l 183 (184)
+++++++||+.|+++||+|||+++
T Consensus 166 s~~~~~~Le~~y~~~ms~eea~~l 189 (213)
T cd03752 166 NQAAQSLLKQDYKDDMTLEEALAL 189 (213)
T ss_pred cHHHHHHHHHhccCCCCHHHHHHH
Confidence 999999999999999999999986
No 5
>cd03750 proteasome_alpha_type_2 proteasome_alpha_type_2. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2.7e-50 Score=318.46 Aligned_cols=179 Identities=16% Similarity=0.258 Sum_probs=169.7
Q ss_pred ccccccccCCCCCCCccccccccCCceEEEEEeCCeEEEEEcCccccCceeeecCCCceEEecCeEEEEecCChHHHHHH
Q psy2074 4 KDYNVNAYHGGVEAPDWLTAKHSCGTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAI 83 (184)
Q Consensus 4 ~~~~~~~~~G~l~qveya~~~~~~g~t~igi~~~dgVvla~d~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l 83 (184)
.+-+.++|+|||+|||||++|+++|+|+|||+++||||||+|+|.+. .++.+++.+||++|++|++|++||+.+|++.+
T Consensus 3 ~~~t~fsp~Grl~QveyA~~av~~G~t~igik~~dgVvlaad~~~~~-~l~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l 81 (227)
T cd03750 3 FSLTTFSPSGKLVQIEYALAAVSSGAPSVGIKAANGVVLATEKKVPS-PLIDESSVHKVEQITPHIGMVYSGMGPDFRVL 81 (227)
T ss_pred CCCceECCCCeEhHHHHHHHHHHcCCCEEEEEeCCEEEEEEeecCCc-cccCCCCcceEEEEcCCEEEEEeEcHHhHHHH
Confidence 34578999999999999999999999999999999999999999984 67788899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHhc-----CCCcceeeEEEEEeCCCCeEEEEEcCCCceeecCeEEEec
Q psy2074 84 SDFVSYNLDLQRMELGEEPLVYSGAKLFQELVYSY-----RDSLTAGIICAGWDRKKGGQVYCIPLGGMLMRQKMAMGGS 158 (184)
Q Consensus 84 ~~~l~~~~~~~~~~~~~~~~~~~la~~l~~~l~~~-----r~p~~~s~llaG~D~~~~~~Ly~idp~G~~~~~~~~a~G~ 158 (184)
.+.++.+++.|++.++++|+++.+++.+++++|.+ .+|+++++||+|||+ .||+||.+||+|++.+++++|+|+
T Consensus 82 ~~~~r~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~rP~~v~~li~G~D~-~g~~Ly~~d~~G~~~~~~~~a~G~ 160 (227)
T cd03750 82 VKKARKIAQQYYLVYGEPIPVSQLVREIASVMQEYTQSGGVRPFGVSLLIAGWDE-GGPYLYQVDPSGSYFTWKATAIGK 160 (227)
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCCCCCChheEEEEEEEeC-CCCEEEEECCCCCEEeeeEEEECC
Confidence 99999999999999999999999999999999765 259999999999997 699999999999999999999999
Q ss_pred CHHhHHHHHhccCCCCCCHHHHhhcC
Q psy2074 159 GSTYLYGHMDNQFKENMTKKEAMSTF 184 (184)
Q Consensus 159 g~~~~~~~Le~~~~~~~s~eea~~l~ 184 (184)
|+++++++||+.|+++||+|||++++
T Consensus 161 g~~~~~~~Le~~~~~~ms~eeai~l~ 186 (227)
T cd03750 161 NYSNAKTFLEKRYNEDLELEDAIHTA 186 (227)
T ss_pred CCHHHHHHHHhhccCCCCHHHHHHHH
Confidence 99999999999999999999999873
No 6
>cd03753 proteasome_alpha_type_5 proteasome_alpha_type_5. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.2e-49 Score=311.98 Aligned_cols=178 Identities=21% Similarity=0.323 Sum_probs=169.1
Q ss_pred cccccccCCCCCCCccccccccCCceEEEEEeCCeEEEEEcCccccCceeeecCCCceEEecCeEEEEecCChHHHHHHH
Q psy2074 5 DYNVNAYHGGVEAPDWLTAKHSCGTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAIS 84 (184)
Q Consensus 5 ~~~~~~~~G~l~qveya~~~~~~g~t~igi~~~dgVvla~d~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~ 84 (184)
+.+.++|+||++|||||++++++|+|+|||+++||||||+|+|.+. .+...++.+||++|+++++|++||+.+|++.+.
T Consensus 4 ~~~~f~p~G~~~Q~eya~~a~~~G~t~igik~~dgVvlaad~r~~~-~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~ 82 (213)
T cd03753 4 GVNTFSPEGRLFQVEYAIEAIKLGSTAIGIKTKEGVVLAVEKRITS-PLMEPSSVEKIMEIDDHIGCAMSGLIADARTLI 82 (213)
T ss_pred CCccCCCCCeEhHHHHHHHHHhcCCCEEEEEeCCEEEEEEecccCC-cCcCCCccceEEEEcCCEEEEEecCHHHHHHHH
Confidence 5688999999999999999999999999999999999999999986 456677899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHhcC----------CCcceeeEEEEEeCCCCeEEEEEcCCCceeecCeE
Q psy2074 85 DFVSYNLDLQRMELGEEPLVYSGAKLFQELVYSYR----------DSLTAGIICAGWDRKKGGQVYCIPLGGMLMRQKMA 154 (184)
Q Consensus 85 ~~l~~~~~~~~~~~~~~~~~~~la~~l~~~l~~~r----------~p~~~s~llaG~D~~~~~~Ly~idp~G~~~~~~~~ 154 (184)
+.++.+++.|++.++++|+++.+++.+++++|+++ +||++++||+|||+ +||+||.+||+|++.+++++
T Consensus 83 ~~~r~~~~~~~~~~~~~i~~~~~~~~ls~~~~~~~~~~~~~~~~~rP~~v~~ii~G~D~-~gp~Ly~vd~~G~~~~~~~~ 161 (213)
T cd03753 83 DHARVEAQNHRFTYNEPMTVESVTQAVSDLALQFGEGDDGKKAMSRPFGVALLIAGVDE-NGPQLFHTDPSGTFTRCDAK 161 (213)
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhCcccccccccccceEEEEEEEEcC-CCCEEEEECCCCCeecccEE
Confidence 99999999999999999999999999999998642 69999999999997 78999999999999999999
Q ss_pred EEecCHHhHHHHHhccCCCCCCHHHHhhcC
Q psy2074 155 MGGSGSTYLYGHMDNQFKENMTKKEAMSTF 184 (184)
Q Consensus 155 a~G~g~~~~~~~Le~~~~~~~s~eea~~l~ 184 (184)
|+|+++++++++||+.|+++||+|||++++
T Consensus 162 a~G~~~~~~~~~L~~~~~~~ls~eeai~l~ 191 (213)
T cd03753 162 AIGSGSEGAQSSLQEKYHKDMTLEEAEKLA 191 (213)
T ss_pred EECCCcHHHHHHHHhhccCCCCHHHHHHHH
Confidence 999999999999999999999999999874
No 7
>PTZ00246 proteasome subunit alpha; Provisional
Probab=100.00 E-value=2e-49 Score=318.16 Aligned_cols=181 Identities=18% Similarity=0.265 Sum_probs=170.8
Q ss_pred ccccccccCCCCCCCccccccccCCceEEEEEeCCeEEEEEcCccccCceeeecCCCceEEecCeEEEEecCChHHHHHH
Q psy2074 4 KDYNVNAYHGGVEAPDWLTAKHSCGTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAI 83 (184)
Q Consensus 4 ~~~~~~~~~G~l~qveya~~~~~~g~t~igi~~~dgVvla~d~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l 83 (184)
.+.++++|+|||+|||||++|+++|+|+|||+++||||||+|+|.+++.++..++.+||++|+++++++++|+.+|++.+
T Consensus 7 ~~~~~fsp~Grl~QvEYA~~av~~g~t~Igik~~dgVvlaad~r~s~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l 86 (253)
T PTZ00246 7 SRTTTFSPEGRLYQVEYALEAINNASLTVGILCKEGVILGADKPISSKLLDPGKINEKIYKIDSHIFCAVAGLTADANIL 86 (253)
T ss_pred CCCceECCCCEEhHHHHHHHHHHhCCCEEEEEECCEEEEEEecCCCCcCccCCCCcccEEEecCCEEEEEEEcHHHHHHH
Confidence 35567899999999999999999999999999999999999999999877766678999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHhcC-----CCcceeeEEEEEeCCCCeEEEEEcCCCceeecCeEEEec
Q psy2074 84 SDFVSYNLDLQRMELGEEPLVYSGAKLFQELVYSYR-----DSLTAGIICAGWDRKKGGQVYCIPLGGMLMRQKMAMGGS 158 (184)
Q Consensus 84 ~~~l~~~~~~~~~~~~~~~~~~~la~~l~~~l~~~r-----~p~~~s~llaG~D~~~~~~Ly~idp~G~~~~~~~~a~G~ 158 (184)
.+.++.++..|++.++++++++.+++.++..++.++ +|++|++||+|||++.+|+||.+||+|++.+++++|+|+
T Consensus 87 ~~~~r~~~~~~~~~~~~~~~v~~l~~~l~~~~q~~~~~~~~rP~~v~~li~G~D~~~gp~Ly~~D~~Gs~~~~~~~a~G~ 166 (253)
T PTZ00246 87 INQCRLYAQRYRYTYGEPQPVEQLVVQICDLKQSYTQFGGLRPFGVSFLFAGYDENLGYQLYHTDPSGNYSGWKATAIGQ 166 (253)
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhccccCcccCCEEEEEEEEeCCCCcEEEEECCCCCEecceEEEECC
Confidence 999999999999999999999999999999877654 499999999999976899999999999999999999999
Q ss_pred CHHhHHHHHhccCCCCCCHHHHhhcC
Q psy2074 159 GSTYLYGHMDNQFKENMTKKEAMSTF 184 (184)
Q Consensus 159 g~~~~~~~Le~~~~~~~s~eea~~l~ 184 (184)
++++++++||+.|+++|++|||++++
T Consensus 167 gs~~~~~~Le~~~~~~ms~eeai~l~ 192 (253)
T PTZ00246 167 NNQTAQSILKQEWKEDLTLEQGLLLA 192 (253)
T ss_pred CcHHHHHHHHHhccCCCCHHHHHHHH
Confidence 99999999999999999999999873
No 8
>cd03756 proteasome_alpha_archeal proteasome_alpha_archeal. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2.7e-49 Score=309.65 Aligned_cols=181 Identities=22% Similarity=0.334 Sum_probs=171.1
Q ss_pred CcccccccccCCCCCCCccccccccCCceEEEEEeCCeEEEEEcCccccCceeeecCCCceEEecCeEEEEecCChHHHH
Q psy2074 2 WNKDYNVNAYHGGVEAPDWLTAKHSCGTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQ 81 (184)
Q Consensus 2 ~~~~~~~~~~~G~l~qveya~~~~~~g~t~igi~~~dgVvla~d~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~ 81 (184)
+..+-+.++|+||++|+|||.+++++|+|+|||+++||||||+|+|.+. .++..++.+||++|++++++++||+.+|++
T Consensus 2 y~~~~~~fsp~G~l~Q~eya~~av~~G~t~igik~~dgvvla~d~~~~~-~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~ 80 (211)
T cd03756 2 YDRAITVFSPDGRLYQVEYAREAVKRGTTALGIKCKEGVVLAVDKRITS-KLVEPESIEKIYKIDDHVGAATSGLVADAR 80 (211)
T ss_pred CCCCCceECCCCeEhHHHHHHHHHHcCCCEEEEEECCEEEEEEeccCCC-cccCCCccceEEEEcCCEEEEEecCHHHHH
Confidence 4567789999999999999999999999999999999999999999985 566678999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHhcC-----CCcceeeEEEEEeCCCCeEEEEEcCCCceeecCeEEE
Q psy2074 82 AISDFVSYNLDLQRMELGEEPLVYSGAKLFQELVYSYR-----DSLTAGIICAGWDRKKGGQVYCIPLGGMLMRQKMAMG 156 (184)
Q Consensus 82 ~l~~~l~~~~~~~~~~~~~~~~~~~la~~l~~~l~~~r-----~p~~~s~llaG~D~~~~~~Ly~idp~G~~~~~~~~a~ 156 (184)
.+.+.++.+++.|+++++++++++.+++.++..++.++ +|+++++||+|||+ ++|+||.+||+|++.+++++|+
T Consensus 81 ~l~~~l~~~~~~~~~~~~~~~~~~~la~~ls~~~~~~~~~~~~rP~~v~~ll~G~D~-~~~~ly~vd~~G~~~~~~~~a~ 159 (211)
T cd03756 81 VLIDRARVEAQIHRLTYGEPIDVEVLVKKICDLKQQYTQHGGVRPFGVALLIAGVDD-GGPRLFETDPSGAYNEYKATAI 159 (211)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCCCeechhEEEEEEEEeC-CCCEEEEECCCCCeeeeEEEEE
Confidence 99999999999999999999999999999999887653 49999999999997 7899999999999999999999
Q ss_pred ecCHHhHHHHHhccCCCCCCHHHHhhcC
Q psy2074 157 GSGSTYLYGHMDNQFKENMTKKEAMSTF 184 (184)
Q Consensus 157 G~g~~~~~~~Le~~~~~~~s~eea~~l~ 184 (184)
|+++++++++||+.|+++|++|||++++
T Consensus 160 G~g~~~~~~~Le~~~~~~m~~~ea~~l~ 187 (211)
T cd03756 160 GSGRQAVTEFLEKEYKEDMSLEEAIELA 187 (211)
T ss_pred CCCCHHHHHHHHhhccCCCCHHHHHHHH
Confidence 9999999999999999999999999863
No 9
>cd03749 proteasome_alpha_type_1 proteasome_alpha_type_1. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=3.2e-49 Score=309.18 Aligned_cols=176 Identities=17% Similarity=0.204 Sum_probs=165.0
Q ss_pred ccccccccCCCCCCCccccccccCCceEEEEEeCCeEEEEEcCccccCceeeecCCCceEEecCeEEEEecCChHHHHHH
Q psy2074 4 KDYNVNAYHGGVEAPDWLTAKHSCGTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAI 83 (184)
Q Consensus 4 ~~~~~~~~~G~l~qveya~~~~~~g~t~igi~~~dgVvla~d~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l 83 (184)
-+.+.++|+||++|||||++|+++|+|+|||+++||||||+|+|.+.+ + .++.+||++|+++++|++||+.+|++.+
T Consensus 3 ~~~t~fsp~Grl~Qveya~~av~~G~t~IgIk~~dgVvlaad~r~~~~-l--~~~~~KI~~I~~~i~~~~sG~~~D~~~l 79 (211)
T cd03749 3 TDVTTWSPQGRLFQVEYAMEAVKQGSATVGLKSKTHAVLVALKRATSE-L--SSYQKKIFKVDDHIGIAIAGLTADARVL 79 (211)
T ss_pred CCCceECCCCeEeHHHHHHHHHhcCCCEEEEEeCCEEEEEEeccCccc-c--CCccccEEEeCCCEEEEEEeChHhHHHH
Confidence 356789999999999999999999999999999999999999998775 3 3466999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHhc-----CCCcceeeEEEEEeCCCCeEEEEEcCCCceeecCeEEEec
Q psy2074 84 SDFVSYNLDLQRMELGEEPLVYSGAKLFQELVYSY-----RDSLTAGIICAGWDRKKGGQVYCIPLGGMLMRQKMAMGGS 158 (184)
Q Consensus 84 ~~~l~~~~~~~~~~~~~~~~~~~la~~l~~~l~~~-----r~p~~~s~llaG~D~~~~~~Ly~idp~G~~~~~~~~a~G~ 158 (184)
.++++.+++.|+++++++|+++.+++.++..+|.+ ++|++|++||+|||+ .||+||.+||+|++.+++++|+|+
T Consensus 80 ~~~~r~~~~~~~~~~~~~~~v~~la~~is~~~~~~t~~~~~rP~~v~~ii~G~D~-~gp~Ly~~Dp~G~~~~~~~~a~G~ 158 (211)
T cd03749 80 SRYMRQECLNYRFVYDSPIPVSRLVSKVAEKAQINTQRYGRRPYGVGLLIAGYDE-SGPHLFQTCPSGNYFEYKATSIGA 158 (211)
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcccCCCCceEEEEEEEEcC-CCCeEEEECCCcCEeeeeEEEECC
Confidence 99999999999999999999999999999988753 459999999999997 689999999999999999999999
Q ss_pred CHHhHHHHHhccCC--CCCCHHHHhhc
Q psy2074 159 GSTYLYGHMDNQFK--ENMTKKEAMST 183 (184)
Q Consensus 159 g~~~~~~~Le~~~~--~~~s~eea~~l 183 (184)
++++++++||+.|+ ++|+.|||+++
T Consensus 159 g~~~a~~~Le~~~~~~~~ms~ee~i~~ 185 (211)
T cd03749 159 RSQSARTYLERHFEEFEDCSLEELIKH 185 (211)
T ss_pred CcHHHHHHHHHhhccccCCCHHHHHHH
Confidence 99999999999998 69999999986
No 10
>cd03754 proteasome_alpha_type_6 proteasome_alpha_type_6. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=3e-49 Score=310.15 Aligned_cols=181 Identities=19% Similarity=0.254 Sum_probs=167.7
Q ss_pred CcccccccccCCCCCCCccccccccC-CceEEEEEeCCeEEEEEcCccccCceeeecCCCceEEecCeEEEEecCChHHH
Q psy2074 2 WNKDYNVNAYHGGVEAPDWLTAKHSC-GTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADT 80 (184)
Q Consensus 2 ~~~~~~~~~~~G~l~qveya~~~~~~-g~t~igi~~~dgVvla~d~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~ 80 (184)
+..+.+.++|+||++|||||++|+++ |+|+|||+++||||||+|+|.+.+ ++..++.+||++|+++++|++||+.+|+
T Consensus 2 yd~~~~~fsp~Grl~Qveya~~a~~~~g~t~igi~~~d~Vvlaad~r~~~~-~i~~~~~~Ki~~I~~~i~~~~sG~~~D~ 80 (215)
T cd03754 2 FDRHITIFSPEGRLYQVEYAFKAVKNAGLTSVAVRGKDCAVVVTQKKVPDK-LIDPSTVTHLFRITDEIGCVMTGMIADS 80 (215)
T ss_pred CCCCCeeECCCCeEeHHHhHHHHHhcCCccEEEEEeCCEEEEEEecccccc-ccCCcccCceEEEcCCEEEEEEechhhH
Confidence 45678899999999999999999975 789999999999999999999874 5455688999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHhc-----CCCcceeeEEEEEeCCCCeEEEEEcCCCceeecCeEE
Q psy2074 81 QAISDFVSYNLDLQRMELGEEPLVYSGAKLFQELVYSY-----RDSLTAGIICAGWDRKKGGQVYCIPLGGMLMRQKMAM 155 (184)
Q Consensus 81 ~~l~~~l~~~~~~~~~~~~~~~~~~~la~~l~~~l~~~-----r~p~~~s~llaG~D~~~~~~Ly~idp~G~~~~~~~~a 155 (184)
+.+.++++.++..|+++++++|+++.+|+.++++++.+ .|||++++||||||++++|+||.+||+|++.+++++|
T Consensus 81 ~~l~~~~r~~~~~~~~~~~~~i~v~~la~~ls~~~q~yt~~~~~RP~~v~~ii~G~D~~~gp~Ly~~Dp~Gs~~~~~~~a 160 (215)
T cd03754 81 RSQVQRARYEAAEFKYKYGYEMPVDVLAKRIADINQVYTQHAYMRPLGVSMILIGIDEELGPQLYKCDPAGYFAGYKATA 160 (215)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhCCCCCcCCeeEEEEEEEeCCCCeEEEEEcCCccEEeEEEEE
Confidence 99999999999999999999999999999999985543 2499999999999976899999999999999999999
Q ss_pred EecCHHhHHHHHhccCCCC--C--CHHHHhhc
Q psy2074 156 GGSGSTYLYGHMDNQFKEN--M--TKKEAMST 183 (184)
Q Consensus 156 ~G~g~~~~~~~Le~~~~~~--~--s~eea~~l 183 (184)
+|+++++++++||+.|+++ | |.|||+++
T Consensus 161 ~G~gs~~~~~~Le~~~~~~~~~~~s~eeai~l 192 (215)
T cd03754 161 AGVKEQEATNFLEKKLKKKPDLIESYEETVEL 192 (215)
T ss_pred ECCCcHHHHHHHHHHhccccccCCCHHHHHHH
Confidence 9999999999999999985 7 99999986
No 11
>COG0638 PRE1 20S proteasome, alpha and beta subunits [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.2e-49 Score=312.85 Aligned_cols=180 Identities=25% Similarity=0.429 Sum_probs=173.9
Q ss_pred cccccccccCCCCCCCccccccccCC-ceEEEEEeCCeEEEEEcCccccCceeeecCCCceEEecCeEEEEecCChHHHH
Q psy2074 3 NKDYNVNAYHGGVEAPDWLTAKHSCG-TTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQ 81 (184)
Q Consensus 3 ~~~~~~~~~~G~l~qveya~~~~~~g-~t~igi~~~dgVvla~d~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~ 81 (184)
....+.++|+|+++|+||+.+++.+| +|+|||+++||||||+|+|.++|.++..++.+|||+|++||+|++||+.+|++
T Consensus 4 ~~~~~~fsp~g~l~q~e~a~~a~~~~gtT~vgik~~dgVVlaadkr~t~~~~~~~~~~~Ki~~I~d~i~~~~sG~~aDa~ 83 (236)
T COG0638 4 DRAITIFSPEGRLFQVEYALEAVKRGGTTTVGIKGKDGVVLAADKRATSGLLIASSNVEKIFKIDDHIGMAIAGLAADAQ 83 (236)
T ss_pred cCcceeECCCCchHHHHHHHHHHHcCCceEEEEEecCEEEEEEeccCCCCceecccccceEEEecCCEEEEeccCcHhHH
Confidence 34567899999999999999999986 99999999999999999999999998888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHhcC---CCcceeeEEEEEeCCCCeEEEEEcCCCceeecCeEEEec
Q psy2074 82 AISDFVSYNLDLQRMELGEEPLVYSGAKLFQELVYSYR---DSLTAGIICAGWDRKKGGQVYCIPLGGMLMRQKMAMGGS 158 (184)
Q Consensus 82 ~l~~~l~~~~~~~~~~~~~~~~~~~la~~l~~~l~~~r---~p~~~s~llaG~D~~~~~~Ly~idp~G~~~~~~~~a~G~ 158 (184)
.++++++.+++.|++.++++|+++.+++++++++|.++ +||+++++|||+|+ ++|+||++||+|++.++++.|+|+
T Consensus 84 ~lv~~~r~~a~~~~~~~~~~i~v~~la~~ls~~l~~~~~~~rP~gv~~iiaG~d~-~~p~Ly~~Dp~G~~~~~~~~a~Gs 162 (236)
T COG0638 84 VLVRYARAEAQLYRLRYGEPISVEALAKLLSNILQEYTQSGRPYGVSLLVAGVDD-GGPRLYSTDPSGSYNEYKATAIGS 162 (236)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccCcccceEEEEEEEEcC-CCCeEEEECCCCceeecCEEEEcC
Confidence 99999999999999999999999999999999999998 49999999999999 899999999999999999999999
Q ss_pred CHHhHHHHHhccCCCCCCHHHHhhc
Q psy2074 159 GSTYLYGHMDNQFKENMTKKEAMST 183 (184)
Q Consensus 159 g~~~~~~~Le~~~~~~~s~eea~~l 183 (184)
|++.++++||+.|+++|++|||+++
T Consensus 163 gs~~a~~~Le~~y~~~m~~eeai~l 187 (236)
T COG0638 163 GSQFAYGFLEKEYREDLSLEEAIEL 187 (236)
T ss_pred CcHHHHHHHHhhccCCCCHHHHHHH
Confidence 9999999999999999999999986
No 12
>TIGR03633 arc_protsome_A proteasome endopeptidase complex, archaeal, alpha subunit. This protein family describes the archaeal proteasome alpha subunit, homologous to both the beta subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.
Probab=100.00 E-value=3.8e-49 Score=311.39 Aligned_cols=180 Identities=22% Similarity=0.343 Sum_probs=170.7
Q ss_pred cccccccccCCCCCCCccccccccCCceEEEEEeCCeEEEEEcCccccCceeeecCCCceEEecCeEEEEecCChHHHHH
Q psy2074 3 NKDYNVNAYHGGVEAPDWLTAKHSCGTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQA 82 (184)
Q Consensus 3 ~~~~~~~~~~G~l~qveya~~~~~~g~t~igi~~~dgVvla~d~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~ 82 (184)
..+.+.++|+||++|||||++++++|+|+|||+++||||||+|+|.+. .++..++.+||++|+++++|++||+.+|++.
T Consensus 4 ~~~~~~f~p~Grl~Qieya~~av~~G~tvigi~~~dgvvlaad~r~~~-~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~ 82 (224)
T TIGR03633 4 DRAITVFSPDGRLYQVEYAREAVKRGTTAVGIKTKDGVVLAVDKRITS-KLVEPSSIEKIFKIDDHIGAATSGLVADARV 82 (224)
T ss_pred CCCCceECCCCeEeHHHHHHHHHHcCCCEEEEEECCEEEEEEeccCCc-cccCCCccceEEEECCCEEEEEeecHHhHHH
Confidence 457889999999999999999999999999999999999999999985 6667788999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHhc-----CCCcceeeEEEEEeCCCCeEEEEEcCCCceeecCeEEEe
Q psy2074 83 ISDFVSYNLDLQRMELGEEPLVYSGAKLFQELVYSY-----RDSLTAGIICAGWDRKKGGQVYCIPLGGMLMRQKMAMGG 157 (184)
Q Consensus 83 l~~~l~~~~~~~~~~~~~~~~~~~la~~l~~~l~~~-----r~p~~~s~llaG~D~~~~~~Ly~idp~G~~~~~~~~a~G 157 (184)
+.+.++.++..|++.++++++++.+++.++++++.+ ++||++++||||+|+ ++|+||.+||.|++.+++++|+|
T Consensus 83 l~~~~~~~~~~~~~~~~~~~~~~~la~~ls~~l~~~~~~~~~rP~~v~~ll~G~d~-~~~~Ly~~D~~G~~~~~~~~a~G 161 (224)
T TIGR03633 83 LIDRARIEAQINRLTYGEPIDVETLAKKICDLKQQYTQHGGVRPFGVALLIAGVDD-GGPRLFETDPSGALLEYKATAIG 161 (224)
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCCCccccceEEEEEEEeC-CcCEEEEECCCCCeecceEEEEC
Confidence 999999999999999999999999999999998765 359999999999996 79999999999999999999999
Q ss_pred cCHHhHHHHHhccCCCCCCHHHHhhcC
Q psy2074 158 SGSTYLYGHMDNQFKENMTKKEAMSTF 184 (184)
Q Consensus 158 ~g~~~~~~~Le~~~~~~~s~eea~~l~ 184 (184)
+++.+++++||+.|+++|+.|||++++
T Consensus 162 ~g~~~~~~~L~~~~~~~~~~eeai~l~ 188 (224)
T TIGR03633 162 AGRQAVTEFLEKEYREDLSLDEAIELA 188 (224)
T ss_pred CCCHHHHHHHHHhccCCCCHHHHHHHH
Confidence 999999999999999999999999873
No 13
>PRK03996 proteasome subunit alpha; Provisional
Probab=100.00 E-value=9.7e-49 Score=312.15 Aligned_cols=181 Identities=19% Similarity=0.332 Sum_probs=171.6
Q ss_pred CcccccccccCCCCCCCccccccccCCceEEEEEeCCeEEEEEcCccccCceeeecCCCceEEecCeEEEEecCChHHHH
Q psy2074 2 WNKDYNVNAYHGGVEAPDWLTAKHSCGTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQ 81 (184)
Q Consensus 2 ~~~~~~~~~~~G~l~qveya~~~~~~g~t~igi~~~dgVvla~d~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~ 81 (184)
+..+.+.++|+||++|||||.+++++|+|+|||+++||||||+|+|.+. .+...++.+||++|+++++|++||+.+|++
T Consensus 10 y~~~~~~fsp~Gr~~Q~eya~~av~~G~t~igik~~dgVvlaad~r~~~-~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~ 88 (241)
T PRK03996 10 YDRAITIFSPDGRLYQVEYAREAVKRGTTAVGVKTKDGVVLAVDKRITS-PLIEPSSIEKIFKIDDHIGAASAGLVADAR 88 (241)
T ss_pred cCCCCceECCCCeEhHHHHHHHHHHhCCCEEEEEeCCEEEEEEeccCCC-cccCCCccceEEEEcCCEEEEEcccHHHHH
Confidence 4578899999999999999999999999999999999999999999985 666778899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHhcC-----CCcceeeEEEEEeCCCCeEEEEEcCCCceeecCeEEE
Q psy2074 82 AISDFVSYNLDLQRMELGEEPLVYSGAKLFQELVYSYR-----DSLTAGIICAGWDRKKGGQVYCIPLGGMLMRQKMAMG 156 (184)
Q Consensus 82 ~l~~~l~~~~~~~~~~~~~~~~~~~la~~l~~~l~~~r-----~p~~~s~llaG~D~~~~~~Ly~idp~G~~~~~~~~a~ 156 (184)
.+++.++.+++.|++.++++++++.+++.+++.++.++ +|+++++||||||+ .||+||.+||+|++.+++++|+
T Consensus 89 ~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~rP~~~~~ilaG~d~-~gp~Ly~id~~G~~~~~~~~a~ 167 (241)
T PRK03996 89 VLIDRARVEAQINRLTYGEPIGVETLTKKICDHKQQYTQHGGVRPFGVALLIAGVDD-GGPRLFETDPSGAYLEYKATAI 167 (241)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCccchheEEEEEEEeC-CcCEEEEECCCCCeecceEEEE
Confidence 99999999999999999999999999999999987653 49999999999997 6899999999999999999999
Q ss_pred ecCHHhHHHHHhccCCCCCCHHHHhhcC
Q psy2074 157 GSGSTYLYGHMDNQFKENMTKKEAMSTF 184 (184)
Q Consensus 157 G~g~~~~~~~Le~~~~~~~s~eea~~l~ 184 (184)
|++++.++++||+.|+++|++|||++++
T Consensus 168 G~g~~~~~~~Le~~~~~~~s~eeai~l~ 195 (241)
T PRK03996 168 GAGRDTVMEFLEKNYKEDLSLEEAIELA 195 (241)
T ss_pred CCCcHHHHHHHHHhcccCCCHHHHHHHH
Confidence 9999999999999999999999999863
No 14
>cd01911 proteasome_alpha proteasome alpha subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 different alpha and 10 different beta proteasome subunit genes while archaea have one of each.
Probab=100.00 E-value=8.7e-49 Score=306.33 Aligned_cols=180 Identities=19% Similarity=0.311 Sum_probs=169.7
Q ss_pred ccccccccCCCCCCCccccccccCCceEEEEEeCCeEEEEEcCccccCceeeecCCCceEEecCeEEEEecCChHHHHHH
Q psy2074 4 KDYNVNAYHGGVEAPDWLTAKHSCGTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAI 83 (184)
Q Consensus 4 ~~~~~~~~~G~l~qveya~~~~~~g~t~igi~~~dgVvla~d~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l 83 (184)
.+-+.++|+||++|+|||++++++|+|+||++++||||+|+|+|.+.+ ++..++.+||++|++++++++||..+|++.+
T Consensus 3 ~~~~~f~~~G~~~q~eya~~~~~~G~tvigi~~~dgVvlaaD~~~~~~-~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l 81 (209)
T cd01911 3 RSITTFSPEGRLFQVEYALEAVKNGSTAVGIKGKDGVVLAVEKKVTSK-LLDPSSVEKIFKIDDHIGCAVAGLTADARVL 81 (209)
T ss_pred CCCccCCCCCEEeHHHHHHHHHHcCCCEEEEEECCEEEEEEEecCCcc-ccCCcccceEEEecCCeEEEeccCcHhHHHH
Confidence 456789999999999999999999999999999999999999999875 5566889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHhc-----CCCcceeeEEEEEeCCCCeEEEEEcCCCceeecCeEEEec
Q psy2074 84 SDFVSYNLDLQRMELGEEPLVYSGAKLFQELVYSY-----RDSLTAGIICAGWDRKKGGQVYCIPLGGMLMRQKMAMGGS 158 (184)
Q Consensus 84 ~~~l~~~~~~~~~~~~~~~~~~~la~~l~~~l~~~-----r~p~~~s~llaG~D~~~~~~Ly~idp~G~~~~~~~~a~G~ 158 (184)
.+.++..+..|++.++++|+++.+|++++++++.+ .+|+++++||+|||++++|+||.+||.|++.+++++++|+
T Consensus 82 ~~~l~~~~~~~~~~~g~~~~~~~la~~ls~~~~~~~~~~~~rP~~v~~iv~G~d~~~~~~Ly~iD~~G~~~~~~~~a~G~ 161 (209)
T cd01911 82 VNRARVEAQNYRYTYGEPIPVEVLVKRIADLAQVYTQYGGVRPFGVSLLIAGYDEEGGPQLYQTDPSGTYFGYKATAIGK 161 (209)
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcccCccChhheEEEEEEcCCCCcEEEEECCCCCeeeeeEEEeCC
Confidence 99999999999999999999999999999988654 3499999999999986799999999999999999999999
Q ss_pred CHHhHHHHHhccCCCCCCHHHHhhcC
Q psy2074 159 GSTYLYGHMDNQFKENMTKKEAMSTF 184 (184)
Q Consensus 159 g~~~~~~~Le~~~~~~~s~eea~~l~ 184 (184)
++++++++||+.|+++|+.+||++++
T Consensus 162 g~~~~~~~L~~~~~~~ms~~ea~~l~ 187 (209)
T cd01911 162 GSQEAKTFLEKRYKKDLTLEEAIKLA 187 (209)
T ss_pred CcHHHHHHHHHhcccCCCHHHHHHHH
Confidence 99999999999999999999999873
No 15
>KOG0184|consensus
Probab=100.00 E-value=1.9e-44 Score=273.52 Aligned_cols=176 Identities=18% Similarity=0.178 Sum_probs=167.2
Q ss_pred cccccccCCCCCCCccccccccCCceEEEEEeCCeEEEEEcCccccCceeeecCCCceEEecCeEEEEecCChHHHHHHH
Q psy2074 5 DYNVNAYHGGVEAPDWLTAKHSCGTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAIS 84 (184)
Q Consensus 5 ~~~~~~~~G~l~qveya~~~~~~g~t~igi~~~dgVvla~d~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~ 84 (184)
+...++|.||+||||||+||+.+++|+||||+|||||+++|+.+++ .+..+....||+.|++||+|+++|+.+|.+.+.
T Consensus 11 s~s~fSpdGrvfQveYA~KAven~~T~IGIk~kdGVVl~vEKli~S-kLy~p~sn~ri~~V~r~iG~avaGl~~Dg~~l~ 89 (254)
T KOG0184|consen 11 SASTFSPDGRVFQVEYAQKAVENSGTCIGIKCKDGVVLAVEKLITS-KLYEPGSNERIFSVDRHIGMAVAGLIPDGRHLV 89 (254)
T ss_pred cceeeCCCCceehHHHHHHHHhcCCcEEEEecCCeEEEEEeeeecc-cccccCCCCceEeecccccEEEeccccchHHHH
Confidence 3468899999999999999999999999999999999999999998 555778899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHhcC-----CCcceeeEEEEEeCCCCeEEEEEcCCCceeecCeEEEecC
Q psy2074 85 DFVSYNLDLQRMELGEEPLVYSGAKLFQELVYSYR-----DSLTAGIICAGWDRKKGGQVYCIPLGGMLMRQKMAMGGSG 159 (184)
Q Consensus 85 ~~l~~~~~~~~~~~~~~~~~~~la~~l~~~l~~~r-----~p~~~s~llaG~D~~~~~~Ly~idp~G~~~~~~~~a~G~g 159 (184)
++++.++..|+-.++.++|...+++.+.++.+.++ ||||++.++++||. +||+||.+||+|..+.++.+|+|.|
T Consensus 90 ~~ar~ea~~~~~~y~~piP~~~la~rva~yvh~~Tly~~vRpfG~~~~~~~yd~-~g~~LymiepSG~~~~Y~~aaiGKg 168 (254)
T KOG0184|consen 90 NRARDEAASWRKNYGDPIPGKHLADRVADYVHAFTLYSSVRPFGASTILGSYDD-EGPQLYMIEPSGSSYGYKGAAIGKG 168 (254)
T ss_pred HHHHHHHHHHHHhcCCCCchHHHHHHHHhhhheeehhhccccccceEEEEEEeC-CCceEEEEcCCCCccceeeeeccch
Confidence 99999999999999999999999999999987765 59999999999996 8999999999999999999999999
Q ss_pred HHhHHHHHhccCCCCCCHHHHhh
Q psy2074 160 STYLYGHMDNQFKENMTKKEAMS 182 (184)
Q Consensus 160 ~~~~~~~Le~~~~~~~s~eea~~ 182 (184)
.+.+++.||++--.+|+.+|+++
T Consensus 169 rq~aKtElEKL~~~~mt~~e~Vk 191 (254)
T KOG0184|consen 169 RQAAKTELEKLKIDEMTCKELVK 191 (254)
T ss_pred hHHHHHHHHhcccccccHHHHHH
Confidence 99999999999999999999886
No 16
>KOG0183|consensus
Probab=100.00 E-value=2.5e-45 Score=277.01 Aligned_cols=178 Identities=17% Similarity=0.257 Sum_probs=167.8
Q ss_pred cccccccCCCCCCCccccccccCCceEEEEEeCCeEEEEEcCccccCceeeecCCCceEEecCeEEEEecCChHHHHHHH
Q psy2074 5 DYNVNAYHGGVEAPDWLTAKHSCGTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAIS 84 (184)
Q Consensus 5 ~~~~~~~~G~l~qveya~~~~~~g~t~igi~~~dgVvla~d~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~ 84 (184)
-.++++|.|||+|||||++|+.+|+|+||++++|+|||+.+++... .+...+...||..+|+|++++++|+.+|++.++
T Consensus 7 altvFSPDGhL~QVEYAqEAvrkGstaVgvrg~~~vvlgvEkkSv~-~Lq~~r~~rkI~~ld~hV~mafaGl~aDArili 85 (249)
T KOG0183|consen 7 ALTVFSPDGHLFQVEYAQEAVRKGSTAVGVRGNNCVVLGVEKKSVP-KLQDERTVRKISMLDDHVVMAFAGLTADARILI 85 (249)
T ss_pred ceEEECCCCCEEeeHhHHHHHhcCceEEEeccCceEEEEEeecchh-hhhhhhhhhhheeecceeeEEecCCCccceeeh
Confidence 4578999999999999999999999999999999999999999776 677888899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHhcC-----CCcceeeEEEEEeCCCCeEEEEEcCCCceeecCeEEEecC
Q psy2074 85 DFVSYNLDLQRMELGEEPLVYSGAKLFQELVYSYR-----DSLTAGIICAGWDRKKGGQVYCIPLGGMLMRQKMAMGGSG 159 (184)
Q Consensus 85 ~~l~~~~~~~~~~~~~~~~~~~la~~l~~~l~~~r-----~p~~~s~llaG~D~~~~~~Ly~idp~G~~~~~~~~a~G~g 159 (184)
+++|.+|+.|+++.+.|++++.++++++.+.|.|+ +|||+|.||+|||+++.|.||++||+|.|.+|++.|+|.+
T Consensus 86 nrArvecqShrlt~edpvtveyitRyiA~~kQrYTqs~grRPFGvs~Li~GfD~~g~p~lyqtePsG~f~ewka~aiGr~ 165 (249)
T KOG0183|consen 86 NRARVECQSHRLTLEDPVTVEYITRYIAGLKQRYTQSNGRRPFGVSTLIGGFDPDGTPRLYQTEPSGIFSEWKANAIGRS 165 (249)
T ss_pred hhHhHhhhhhhcccCCCcHHHHHHHHHHHhhhhhhccCCcccccceEEEEeeCCCCCeeeEeeCCCcchhhhhccccccc
Confidence 99999999999999999999999999999998874 5999999999999999999999999999999999999999
Q ss_pred HHhHHHHHhccCCCC--CCHHHHhhc
Q psy2074 160 STYLYGHMDNQFKEN--MTKKEAMST 183 (184)
Q Consensus 160 ~~~~~~~Le~~~~~~--~s~eea~~l 183 (184)
++.+..+||+.|.++ .+..++++|
T Consensus 166 sk~VrEflEK~y~e~~~~~~~~~ikL 191 (249)
T KOG0183|consen 166 SKTVREFLEKNYKEEAIATEGETIKL 191 (249)
T ss_pred cHHHHHHHHHhcccccccccccHHHH
Confidence 999999999999765 677777765
No 17
>cd03759 proteasome_beta_type_3 proteasome beta type-3 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2.5e-43 Score=272.85 Aligned_cols=158 Identities=22% Similarity=0.306 Sum_probs=150.3
Q ss_pred CCceEEEEEeCCeEEEEEcCccccCceeeecCCCceEEecCeEEEEecCChHHHHHHHHHHHHHHHHHHHHhCCCCcHHH
Q psy2074 27 CGTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYS 106 (184)
Q Consensus 27 ~g~t~igi~~~dgVvla~d~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~~~~ 106 (184)
+|+|+|||+++||||||+|+|.+++.++.+++.+|||+|++|+++++||..+|++.+.++++.+++.|+++++.+|+++.
T Consensus 2 ~G~t~igik~~dgVvlaad~~~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~ 81 (195)
T cd03759 2 NGGAVVAMAGKDCVAIASDLRLGVQQQTVSTDFQKVFRIGDRLYIGLAGLATDVQTLAQKLRFRVNLYRLREEREIKPKT 81 (195)
T ss_pred CCceEEEEEcCCEEEEEEccccccCCEeEecCCCeEEEeCCCEEEEccchHHHHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 69999999999999999999999987776778999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcC-CCcceeeEEEEEeCCCCeEEEEEcCCCceeecC-eEEEecCHHhHHHHHhccCCCCCCHHHHhhcC
Q psy2074 107 GAKLFQELVYSYR-DSLTAGIICAGWDRKKGGQVYCIPLGGMLMRQK-MAMGGSGSTYLYGHMDNQFKENMTKKEAMSTF 184 (184)
Q Consensus 107 la~~l~~~l~~~r-~p~~~s~llaG~D~~~~~~Ly~idp~G~~~~~~-~~a~G~g~~~~~~~Le~~~~~~~s~eea~~l~ 184 (184)
+++++++++|.+| +|+++++||||||++++|+||.+||+|++.+++ ++|+|+|+++++++||+.|+++||.|||++++
T Consensus 82 la~~l~~~ly~~r~~P~~v~~ii~G~D~~~~p~Ly~~D~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~ 161 (195)
T cd03759 82 FSSLISSLLYEKRFGPYFVEPVVAGLDPDGKPFICTMDLIGCPSIPSDFVVSGTASEQLYGMCESLWRPDMEPDELFETI 161 (195)
T ss_pred HHHHHHHHHHHhcCCCceEEEEEEEEcCCCCEEEEEEcCCCcccccCCEEEEcccHHHHHHHHHhccCCCCCHHHHHHHH
Confidence 9999999998875 599999999999986789999999999998877 99999999999999999999999999999873
No 18
>cd03761 proteasome_beta_type_5 proteasome beta type-5 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=5.2e-43 Score=269.63 Aligned_cols=155 Identities=29% Similarity=0.550 Sum_probs=150.4
Q ss_pred ceEEEEEeCCeEEEEEcCccccCceeeecCCCceEEecCeEEEEecCChHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHH
Q psy2074 29 TTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGA 108 (184)
Q Consensus 29 ~t~igi~~~dgVvla~d~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~~~~la 108 (184)
+|+|||+++||||||+|+|.+++.++.+++.+|||+|++|+++++||+.+|++.++++++.+++.|++.++++|+++.++
T Consensus 1 tT~igi~~kdgVvla~d~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~y~~~~~~~i~~~~la 80 (188)
T cd03761 1 TTTLAFIFQGGVIVAVDSRATAGSYIASQTVKKVIEINPYLLGTMAGGAADCQYWERVLGRECRLYELRNKERISVAAAS 80 (188)
T ss_pred CcEEEEEECCEEEEEEcCCccCCcEEEcCCcceEEEccCcEEEEeCccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 68999999999999999999998888888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCC-CcceeeEEEEEeCCCCeEEEEEcCCCceeecCeEEEecCHHhHHHHHhccCCCCCCHHHHhhcC
Q psy2074 109 KLFQELVYSYRD-SLTAGIICAGWDRKKGGQVYCIPLGGMLMRQKMAMGGSGSTYLYGHMDNQFKENMTKKEAMSTF 184 (184)
Q Consensus 109 ~~l~~~l~~~r~-p~~~s~llaG~D~~~~~~Ly~idp~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~eea~~l~ 184 (184)
+++++++|.+|. |+++++||||||+ +||+||++||+|++.+++++|+|+|+++++++||+.|+++||.|||++++
T Consensus 81 ~~ls~~l~~~~~~~~~v~~li~G~D~-~g~~L~~~dp~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~eea~~l~ 156 (188)
T cd03761 81 KLLSNMLYQYKGMGLSMGTMICGWDK-TGPGLYYVDSDGTRLKGDLFSVGSGSTYAYGVLDSGYRYDLSVEEAYDLA 156 (188)
T ss_pred HHHHHHHHhcCCCCeEEEEEEEEEeC-CCCEEEEEcCCceEEEcCeEEEcccHHHHHHHHHhcCCCCCCHHHHHHHH
Confidence 999999999986 9999999999997 79999999999999999999999999999999999999999999999873
No 19
>cd03758 proteasome_beta_type_2 proteasome beta type-2 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.9e-42 Score=267.55 Aligned_cols=155 Identities=24% Similarity=0.384 Sum_probs=148.8
Q ss_pred ceEEEEEeCCeEEEEEcCccccCceeeecCCCceEEecCeEEEEecCChHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHH
Q psy2074 29 TTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGA 108 (184)
Q Consensus 29 ~t~igi~~~dgVvla~d~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~~~~la 108 (184)
+|+|||+++||||||+|+|.+.+.++.+++.+|||+|++++++++||..+|++.+.++++.+++.|++.++++++++.++
T Consensus 2 ~t~igi~~~dgVvlaad~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~~~~la 81 (193)
T cd03758 2 ETLIGIKGKDFVILAADTSAARSILVLKDDEDKIYKLSDHKLMACSGEAGDRLQFAEYIQKNIQLYKMRNGYELSPKAAA 81 (193)
T ss_pred ceEEEEEeCCEEEEEEcCccccCcEEEecCcccEEEeCCCeEEEEccchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 79999999999999999999998888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhc---CCCcceeeEEEEEeCCCCeEEEEEcCCCceeecCeEEEecCHHhHHHHHhccCCCCCCHHHHhhc
Q psy2074 109 KLFQELVYSY---RDSLTAGIICAGWDRKKGGQVYCIPLGGMLMRQKMAMGGSGSTYLYGHMDNQFKENMTKKEAMST 183 (184)
Q Consensus 109 ~~l~~~l~~~---r~p~~~s~llaG~D~~~~~~Ly~idp~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~eea~~l 183 (184)
+++++++|.+ ++||++++||+|||++++|+||++||+|++.+++++|+|+|+++++++||+.|+++||.|||+++
T Consensus 82 ~~l~~~~~~~~~~~rP~~~~~li~G~d~~~~p~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~ms~eeai~l 159 (193)
T cd03758 82 NFTRRELAESLRSRTPYQVNLLLAGYDKVEGPSLYYIDYLGTLVKVPYAAHGYGAYFCLSILDRYYKPDMTVEEALEL 159 (193)
T ss_pred HHHHHHHHHHhhcCCCeEEEEEEEEEcCCCCcEEEEECCCcceEECCeeEEeecHHHHHHHHHhccCCCCCHHHHHHH
Confidence 9999998654 24999999999999768999999999999999999999999999999999999999999999986
No 20
>KOG0178|consensus
Probab=100.00 E-value=7.9e-44 Score=268.34 Aligned_cols=177 Identities=18% Similarity=0.279 Sum_probs=168.9
Q ss_pred cccccCCCCCCCccccccccCCceEEEEEeCCeEEEEEcCccccCceeeecCCCceEEecCeEEEEecCChHHHHHHHHH
Q psy2074 7 NVNAYHGGVEAPDWLTAKHSCGTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAISDF 86 (184)
Q Consensus 7 ~~~~~~G~l~qveya~~~~~~g~t~igi~~~dgVvla~d~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~ 86 (184)
++++|+||++|||||++++.+.+|+||+-.+||||||++++.+++.+-.+...+||++|+|||+|+++|+++|+..|++.
T Consensus 10 tiFspEGRLyQVEyAmeais~aGt~iGila~DGvvLa~e~k~t~kll~t~~~~EKiY~l~d~iaC~vaGlt~DAnvL~n~ 89 (249)
T KOG0178|consen 10 TIFSPEGRLYQVEYAMEAISHAGTCIGILASDGVVLAGENKVTSKLLDTSIPMEKIYKLNDNIACAVAGLTSDANVLKNY 89 (249)
T ss_pred cccCCCcchHHHHHHHHHHhhhcceeEEEecCceEEEeecccchhhhhccccHHHhhhcCCceEEEEecccccHHHHHHH
Confidence 57899999999999999999999999999999999999999999877778899999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCcHHHHHHHHHHHHHhcC-----CCcceeeEEEEEeCCCCeEEEEEcCCCceeecCeEEEecCHH
Q psy2074 87 VSYNLDLQRMELGEEPLVYSGAKLFQELVYSYR-----DSLTAGIICAGWDRKKGGQVYCIPLGGMLMRQKMAMGGSGST 161 (184)
Q Consensus 87 l~~~~~~~~~~~~~~~~~~~la~~l~~~l~~~r-----~p~~~s~llaG~D~~~~~~Ly~idp~G~~~~~~~~a~G~g~~ 161 (184)
+|..++.|.+.+|++||++.|+..+++..|.++ ||||||+|.+|||...|.+||+.||+|++..|++.++|.++.
T Consensus 90 aRi~AQ~yl~~y~e~iP~eqLv~~lcdiKQayTQygG~RPFGVSfLYaGwd~~~gyqLy~SdPSGny~gWka~ciG~N~~ 169 (249)
T KOG0178|consen 90 ARIIAQRYLFRYGEEIPCEQLVTFLCDIKQAYTQYGGKRPFGVSFLYAGWDDRYGYQLYQSDPSGNYGGWKATCIGANSG 169 (249)
T ss_pred HHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHhhccCcCCCceeeeeeceecCcceEEEecCCCCCccccceeeeccchH
Confidence 999999999999999999999999999998775 599999999999998899999999999999999999999999
Q ss_pred hHHHHHhccCCCCCC-HHHHhhc
Q psy2074 162 YLYGHMDNQFKENMT-KKEAMST 183 (184)
Q Consensus 162 ~~~~~Le~~~~~~~s-~eea~~l 183 (184)
.++.+|+..|+++.. ++||+.+
T Consensus 170 Aa~s~Lkqdykdd~~~~~eA~~l 192 (249)
T KOG0178|consen 170 AAQSMLKQDYKDDENDLEEAKAL 192 (249)
T ss_pred HHHHHHHhhhccccccHHHHHHH
Confidence 999999999987665 9999875
No 21
>cd03757 proteasome_beta_type_1 proteasome beta type-1 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.6e-42 Score=271.56 Aligned_cols=160 Identities=27% Similarity=0.313 Sum_probs=152.6
Q ss_pred ccCCceEEEEEeCCeEEEEEcCccccCceeeecCCCceEEecCeEEEEecCChHHHHHHHHHHHHHHHHHHHHhCCCCcH
Q psy2074 25 HSCGTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLV 104 (184)
Q Consensus 25 ~~~g~t~igi~~~dgVvla~d~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~~ 104 (184)
+++|+|+|||+++||||||+|+|.+++.++..++.+||++|++++++++||..+|++.+.+.++.+++.|++.++++|++
T Consensus 5 ~~~G~Tvigik~~dgVvlaaD~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~i~~ 84 (212)
T cd03757 5 TDNGGTVLAIAGNDFAVIAGDTRLSEGYSILSRDSPKIFKLTDKCVLGSSGFQADILALTKRLKARIKMYKYSHNKEMST 84 (212)
T ss_pred cCCCccEEEEEcCCEEEEEECCccccCCEeEeCCCCeEEEcCCCEEEEccchHHHHHHHHHHHHHHHHHHhHHhCCCCCH
Confidence 46799999999999999999999999988888899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCC-CcceeeEEEEEeCCCCeEEEEEcCCCceeecCeEEEecCHHhHHHHHhccCC---------CC
Q psy2074 105 YSGAKLFQELVYSYRD-SLTAGIICAGWDRKKGGQVYCIPLGGMLMRQKMAMGGSGSTYLYGHMDNQFK---------EN 174 (184)
Q Consensus 105 ~~la~~l~~~l~~~r~-p~~~s~llaG~D~~~~~~Ly~idp~G~~~~~~~~a~G~g~~~~~~~Le~~~~---------~~ 174 (184)
+.+++.+++++|.+|. |+++++||||||++++|+||.+||+|++.+++++|+|+|+.+++++||+.|+ ++
T Consensus 85 ~~la~~ls~~ly~~R~~P~~~~~iiaG~D~~~~p~Ly~~D~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~~~~~~ 164 (212)
T cd03757 85 EAIAQLLSTILYSRRFFPYYVFNILAGIDEEGKGVVYSYDPVGSYERETYSAGGSASSLIQPLLDNQVGRKNQNNVERTP 164 (212)
T ss_pred HHHHHHHHHHHHhhcCCCeEEEEEEEEEcCCCCEEEEEEcCccCeeecCEEEEeecHHHHHHHHHHHHHhhccCcCCCCC
Confidence 9999999999998764 9999999999997678999999999999999999999999999999999985 89
Q ss_pred CCHHHHhhcC
Q psy2074 175 MTKKEAMSTF 184 (184)
Q Consensus 175 ~s~eea~~l~ 184 (184)
||+|||++++
T Consensus 165 ms~eea~~l~ 174 (212)
T cd03757 165 LSLEEAVSLV 174 (212)
T ss_pred CCHHHHHHHH
Confidence 9999999873
No 22
>cd03760 proteasome_beta_type_4 proteasome beta type-4 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=4.8e-42 Score=266.01 Aligned_cols=158 Identities=20% Similarity=0.293 Sum_probs=149.6
Q ss_pred CCceEEEEEeCCeEEEEEcCccccCceeeecCCCceEEecCeEEEEecCChHHHHHHHHHHHHHHH-HHHHHhCCCCcHH
Q psy2074 27 CGTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLD-LQRMELGEEPLVY 105 (184)
Q Consensus 27 ~g~t~igi~~~dgVvla~d~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~-~~~~~~~~~~~~~ 105 (184)
.|+|+|||+++||||||+|+|.+++.++.+++.+|||+|++|++++++|+.+|++.++++++.+++ .+++.++.+|+++
T Consensus 1 ~G~T~igi~~kdgVvlaad~r~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~ 80 (197)
T cd03760 1 TGTSVIAIKYKDGVIIAADTLGSYGSLARFKNVERIFKVGDNTLLGASGDYADFQYLKRLLDQLVIDDECLDDGHSLSPK 80 (197)
T ss_pred CCceEEEEEeCCcEEEEEcCcccccceeecCCCCcEEEecCcEEEEeCcchHHHHHHHHHHHHHHHHHHHHhCCCCCCHH
Confidence 489999999999999999999998899899999999999999999999999999999999999987 5667899999999
Q ss_pred HHHHHHHHHHHhcC---CCcceeeEEEEEeCCCCeEEEEEcCCCceeecCeEEEecCHHhHHHHHhccCCC--CCCHHHH
Q psy2074 106 SGAKLFQELVYSYR---DSLTAGIICAGWDRKKGGQVYCIPLGGMLMRQKMAMGGSGSTYLYGHMDNQFKE--NMTKKEA 180 (184)
Q Consensus 106 ~la~~l~~~l~~~r---~p~~~s~llaG~D~~~~~~Ly~idp~G~~~~~~~~a~G~g~~~~~~~Le~~~~~--~~s~eea 180 (184)
.+++++++++|.++ +||++++||||||++++|+||.+||+|++.+++++|+|+|+.+++++||+.|++ +||.|||
T Consensus 81 ~la~~i~~~~y~~~~~~rP~~v~~iiaG~D~~~gp~Ly~~D~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~ms~eea 160 (197)
T cd03760 81 EIHSYLTRVLYNRRSKMNPLWNTLVVGGVDNEGEPFLGYVDLLGTAYEDPHVATGFGAYLALPLLREAWEKKPDLTEEEA 160 (197)
T ss_pred HHHHHHHHHHHHHhhcCCCceEEEEEEEEcCCCCEEEEEEcCCccEEECCEeEEccHHHHHHHHHHhhcCCCCCCCHHHH
Confidence 99999999998765 599999999999976899999999999999999999999999999999999999 9999999
Q ss_pred hhcC
Q psy2074 181 MSTF 184 (184)
Q Consensus 181 ~~l~ 184 (184)
++++
T Consensus 161 ~~l~ 164 (197)
T cd03760 161 RALI 164 (197)
T ss_pred HHHH
Confidence 9863
No 23
>cd03762 proteasome_beta_type_6 proteasome beta type-6 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=9.1e-42 Score=262.60 Aligned_cols=156 Identities=65% Similarity=1.122 Sum_probs=151.3
Q ss_pred ceEEEEEeCCeEEEEEcCccccCceeeecCCCceEEecCeEEEEecCChHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHH
Q psy2074 29 TTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGA 108 (184)
Q Consensus 29 ~t~igi~~~dgVvla~d~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~~~~la 108 (184)
+|+|||+++||||||+|+|.++|.++.+++.+||++|++|++++++|+.+|++.+.++++.+++.|++.++++++++.++
T Consensus 1 ~t~igi~~~dgVvla~D~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~~~~~a 80 (188)
T cd03762 1 TTIIAVEYDGGVVLGADSRTSTGSYVANRVTDKLTQLHDRIYCCRSGSAADTQAIADYVRYYLDMHSIELGEPPLVKTAA 80 (188)
T ss_pred CeEEEEEECCeEEEEEcccccCCceEEcCCcccEEEccCCEEEEecccHHHHHHHHHHHHHHHHHhHHhhCCCCCHHHHH
Confidence 68999999999999999999999888888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCcceeeEEEEEeCCCCeEEEEEcCCCceeecCeEEEecCHHhHHHHHhccCCCCCCHHHHhhcC
Q psy2074 109 KLFQELVYSYRDSLTAGIICAGWDRKKGGQVYCIPLGGMLMRQKMAMGGSGSTYLYGHMDNQFKENMTKKEAMSTF 184 (184)
Q Consensus 109 ~~l~~~l~~~r~p~~~s~llaG~D~~~~~~Ly~idp~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~eea~~l~ 184 (184)
+++++++|.+|+||++++||||+|++++|+||.+||.|++.+++++++|+++++++++||+.|+++||+|||++++
T Consensus 81 ~~l~~~~~~~~~~~~~~~ii~G~d~~~gp~ly~~d~~G~~~~~~~~~~G~g~~~~~~~Le~~~~~~~s~~ea~~l~ 156 (188)
T cd03762 81 SLFKNLCYNYKEMLSAGIIVAGWDEQNGGQVYSIPLGGMLIRQPFAIGGSGSTYIYGYVDANYKPGMTLEECIKFV 156 (188)
T ss_pred HHHHHHHHhccccceeeEEEEEEcCCCCcEEEEECCCCCEEecCEEEEcccHHHHHHHHHhcCCCCCCHHHHHHHH
Confidence 9999999999999999999999997678999999999999999999999999999999999999999999999863
No 24
>TIGR03634 arc_protsome_B proteasome endopeptidase complex, archaeal, beta subunit. This protein family describes the archaeal proteasome beta subunit, homologous to both the alpha subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.
Probab=100.00 E-value=1.8e-41 Score=260.34 Aligned_cols=156 Identities=28% Similarity=0.469 Sum_probs=150.6
Q ss_pred CceEEEEEeCCeEEEEEcCccccCceeeecCCCceEEecCeEEEEecCChHHHHHHHHHHHHHHHHHHHHhCCCCcHHHH
Q psy2074 28 GTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSG 107 (184)
Q Consensus 28 g~t~igi~~~dgVvla~d~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~~~~l 107 (184)
|+|+|||+++||||||+|+|.+.+.++.+++.+|||+|++++++++||..+|++.+.++++.+++.|++.++.+++++.+
T Consensus 1 G~t~igi~~~dgVvla~d~~~~~~~~i~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 80 (185)
T TIGR03634 1 GTTTVGIKCKDGVVLAADKRASMGNFVASKNAKKVFQIDDYIAMTIAGSVGDAQSLVRILKAEAKLYELRRGRPMSVKAL 80 (185)
T ss_pred CCcEEEEEeCCEEEEEEcCcccCCCEEecCCcccEEEcCCCEEEEcCchHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 79999999999999999999998899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcC-CCcceeeEEEEEeCCCCeEEEEEcCCCceeecCeEEEecCHHhHHHHHhccCCCCCCHHHHhhcC
Q psy2074 108 AKLFQELVYSYR-DSLTAGIICAGWDRKKGGQVYCIPLGGMLMRQKMAMGGSGSTYLYGHMDNQFKENMTKKEAMSTF 184 (184)
Q Consensus 108 a~~l~~~l~~~r-~p~~~s~llaG~D~~~~~~Ly~idp~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~eea~~l~ 184 (184)
++++++++|.++ +|+++++||||||+ +||+||.+||+|++.+++++++|+++++++++||+.|+++||++||++++
T Consensus 81 a~~l~~~~~~~~~rP~~v~~ivaG~d~-~g~~Ly~~d~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~ 157 (185)
T TIGR03634 81 ATLLSNILNSNRFFPFIVQLLVGGVDE-EGPHLYSLDPAGGIIEDDYTATGSGSPVAYGVLEDEYREDMSVEEAKKLA 157 (185)
T ss_pred HHHHHHHHHhcCCCCeEEEEEEEEEeC-CCCEEEEECCCCCeEECCEEEEcCcHHHHHHHHHhcCCCCCCHHHHHHHH
Confidence 999999999876 49999999999997 68999999999999999999999999999999999999999999999863
No 25
>cd03763 proteasome_beta_type_7 proteasome beta type-7 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2.8e-41 Score=260.13 Aligned_cols=154 Identities=34% Similarity=0.634 Sum_probs=149.8
Q ss_pred ceEEEEEeCCeEEEEEcCccccCceeeecCCCceEEecCeEEEEecCChHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHH
Q psy2074 29 TTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGA 108 (184)
Q Consensus 29 ~t~igi~~~dgVvla~d~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~~~~la 108 (184)
+|+|||+++||||||+|+|.++|.++..++.+|||+|+++++++++|..+|++.+.+.++.+++.|+++++++++++.++
T Consensus 1 tt~igi~~~dgvvlaad~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~a 80 (189)
T cd03763 1 TTIVGVVFKDGVVLGADTRATEGPIVADKNCEKIHYIAPNIYCCGAGTAADTEAVTNMISSNLELHRLNTGRKPRVVTAL 80 (189)
T ss_pred CeEEEEEECCeEEEEEcCCcccCceEEcCCccceEEecCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 68999999999999999999999888888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCcceeeEEEEEeCCCCeEEEEEcCCCceeecCeEEEecCHHhHHHHHhccCCCCCCHHHHhhc
Q psy2074 109 KLFQELVYSYRDSLTAGIICAGWDRKKGGQVYCIPLGGMLMRQKMAMGGSGSTYLYGHMDNQFKENMTKKEAMST 183 (184)
Q Consensus 109 ~~l~~~l~~~r~p~~~s~llaG~D~~~~~~Ly~idp~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~eea~~l 183 (184)
+++++.+|.++.|++|++||||||+ .+|+||.+||+|++.+++++|+|+++++++++||+.|+|+||++||+++
T Consensus 81 ~~l~~~l~~~~~p~~v~~ivaG~d~-~g~~ly~~d~~G~~~~~~~~a~G~~~~~~~~~L~~~~~~~ls~~ea~~l 154 (189)
T cd03763 81 TMLKQHLFRYQGHIGAALVLGGVDY-TGPHLYSIYPHGSTDKLPFVTMGSGSLAAMSVLEDRYKPDMTEEEAKKL 154 (189)
T ss_pred HHHHHHHHHcCCccceeEEEEeEcC-CCCEEEEECCCCCEEecCEEEEcCCHHHHHHHHHhhcCCCCCHHHHHHH
Confidence 9999999999889999999999997 6799999999999999999999999999999999999999999999986
No 26
>PTZ00488 Proteasome subunit beta type-5; Provisional
Probab=100.00 E-value=3.4e-41 Score=269.04 Aligned_cols=160 Identities=29% Similarity=0.537 Sum_probs=153.3
Q ss_pred cccCCceEEEEEeCCeEEEEEcCccccCceeeecCCCceEEecCeEEEEecCChHHHHHHHHHHHHHHHHHHHHhCCCCc
Q psy2074 24 KHSCGTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPL 103 (184)
Q Consensus 24 ~~~~g~t~igi~~~dgVvla~d~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~ 103 (184)
.+.+|+|+|||+++||||||+|+|.+++.++.+++.+||++|++|+++++||+.+|++.+.++++.+++.|++.++++|+
T Consensus 35 ~~~~G~T~IgIk~kdgVvlAaD~r~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~lr~~~~~y~~~~g~~is 114 (247)
T PTZ00488 35 EFAHGTTTLAFKYGGGIIIAVDSKATAGPYIASQSVKKVIEINPTLLGTMAGGAADCSFWERELAMQCRLYELRNGELIS 114 (247)
T ss_pred ccCCCceEEEEEeCCEEEEEEecCcccCCEEEcCCcCceEEcCCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 67889999999999999999999999989999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCC-CcceeeEEEEEeCCCCeEEEEEcCCCceeecCeEEEecCHHhHHHHHhccCCCCCCHHHHhh
Q psy2074 104 VYSGAKLFQELVYSYRD-SLTAGIICAGWDRKKGGQVYCIPLGGMLMRQKMAMGGSGSTYLYGHMDNQFKENMTKKEAMS 182 (184)
Q Consensus 104 ~~~la~~l~~~l~~~r~-p~~~s~llaG~D~~~~~~Ly~idp~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~eea~~ 182 (184)
++.+|+++++++|.+|. |+.+++||||||+ .||+||++||+|++.+++++|+|+|+.+++++||+.|+++||.|||++
T Consensus 115 v~~la~~ls~~l~~~R~~~~~v~~iiaG~D~-~gp~Ly~vDp~Gs~~~~~~~a~G~gs~~~~~~Le~~~k~dms~eEai~ 193 (247)
T PTZ00488 115 VAAASKILANIVWNYKGMGLSMGTMICGWDK-KGPGLFYVDNDGTRLHGNMFSCGSGSTYAYGVLDAGFKWDLNDEEAQD 193 (247)
T ss_pred HHHHHHHHHHHHHhcCCCCeeEEEEEEEEeC-CCCEEEEEcCCcceeecCCEEEccCHHHHHHHHHhcCcCCCCHHHHHH
Confidence 99999999999999875 7777799999997 689999999999999999999999999999999999999999999998
Q ss_pred cC
Q psy2074 183 TF 184 (184)
Q Consensus 183 l~ 184 (184)
++
T Consensus 194 l~ 195 (247)
T PTZ00488 194 LG 195 (247)
T ss_pred HH
Confidence 74
No 27
>KOG0181|consensus
Probab=100.00 E-value=6.6e-43 Score=260.53 Aligned_cols=177 Identities=16% Similarity=0.261 Sum_probs=170.3
Q ss_pred ccccccccCCCCCCCccccccccCCceEEEEEeCCeEEEEEcCccccCceeeecCCCceEEecCeEEEEecCChHHHHHH
Q psy2074 4 KDYNVNAYHGGVEAPDWLTAKHSCGTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAI 83 (184)
Q Consensus 4 ~~~~~~~~~G~l~qveya~~~~~~g~t~igi~~~dgVvla~d~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l 83 (184)
.+.++++|+|+|-|+|||..|+.+|.+.|||+-.||||||++++..+ .+....+.+|++.|.+||+|.+||+.+|++.+
T Consensus 8 fslTtFSpsGKL~QieyAL~Av~~G~~SvGi~A~nGvVlatekk~~s-~L~~~~sv~KV~~i~~~IG~vYSGmgpD~Rvl 86 (233)
T KOG0181|consen 8 FSLTTFSPSGKLVQIEYALTAVVNGQTSVGIKAANGVVLATEKKDVS-PLVDEESVRKVEKITPHIGCVYSGMGPDYRVL 86 (233)
T ss_pred eeeEEEcCCCceehHHHHHHHHhCCCCceeeeecCceEEEeccCCCC-ccchhhhhhhHhhccCCcceEEecCCCceeeh
Confidence 46789999999999999999999999999999999999999998876 77788899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHhcC-----CCcceeeEEEEEeCCCCeEEEEEcCCCceeecCeEEEec
Q psy2074 84 SDFVSYNLDLQRMELGEEPLVYSGAKLFQELVYSYR-----DSLTAGIICAGWDRKKGGQVYCIPLGGMLMRQKMAMGGS 158 (184)
Q Consensus 84 ~~~l~~~~~~~~~~~~~~~~~~~la~~l~~~l~~~r-----~p~~~s~llaG~D~~~~~~Ly~idp~G~~~~~~~~a~G~ 158 (184)
++..++.++.|...++++|++..+...++..+|+++ +|||+++++||||+ ++|.||++||+|++..|+++|+|.
T Consensus 87 V~~~rkiAe~Yy~vY~e~~pt~qlv~~~asvmQEyTqsgGvrPFGvslliaG~~~-~~p~LyQvdPSGsyf~wkatA~Gk 165 (233)
T KOG0181|consen 87 VHKSRKIAEQYYRVYGEPIPTTQLVQEVASVMQEYTQSGGVRPFGVSLLIAGWDE-GGPLLYQVDPSGSYFAWKATAMGK 165 (233)
T ss_pred hhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCCccccceEEEEeecCC-CceeEEEECCccceeehhhhhhcc
Confidence 999999999999999999999999999999999986 49999999999999 799999999999999999999999
Q ss_pred CHHhHHHHHhccCCCCCCHHHHhh
Q psy2074 159 GSTYLYGHMDNQFKENMTKKEAMS 182 (184)
Q Consensus 159 g~~~~~~~Le~~~~~~~s~eea~~ 182 (184)
+...++.+||++|+++|.+++|+.
T Consensus 166 n~v~aktFlEkR~~edleldd~ih 189 (233)
T KOG0181|consen 166 NYVNAKTFLEKRYNEDLELDDAIH 189 (233)
T ss_pred CcchHHHHHHHHhccccccchHHH
Confidence 999999999999999999999985
No 28
>TIGR03690 20S_bact_beta proteasome, beta subunit, bacterial type. Members of this family are the beta subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In Streptomyces, maturation during proteasome assembly was shown to remove a 53-amino acid propeptide. Most of the length of the propeptide is not included in this model.
Probab=100.00 E-value=6.8e-41 Score=263.46 Aligned_cols=157 Identities=20% Similarity=0.342 Sum_probs=149.4
Q ss_pred CCceEEEEEeCCeEEEEEcCccccCceeeecCCCceEEecCeEEEEecCChHHHHHHHHHHHHHHHHHHHHhCCCCcHHH
Q psy2074 27 CGTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYS 106 (184)
Q Consensus 27 ~g~t~igi~~~dgVvla~d~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~~~~ 106 (184)
+|+|+|||+++||||||+|+|.++|.++.+++.+|||+|++|++|++||+.+|++.+.++++.+++.|++.++++|+++.
T Consensus 1 ~G~T~igi~~kdgVvlaad~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~ 80 (219)
T TIGR03690 1 HGTTIVALTYPGGVLMAGDRRATQGNMIASRDVEKVYPTDEYSAVGIAGTAGLAIELVRLFQVELEHYEKIEGVPLTLDG 80 (219)
T ss_pred CCcEEEEEEECCEEEEEECCccccCcEEEcCCcceEEEcCCcEEEEecccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhc----CCCcceeeEEEEEeCC-CCeEEEEEcCCC-ceeecCeEEEecCHHhHHHHHhccCCCCCCHHHH
Q psy2074 107 GAKLFQELVYSY----RDSLTAGIICAGWDRK-KGGQVYCIPLGG-MLMRQKMAMGGSGSTYLYGHMDNQFKENMTKKEA 180 (184)
Q Consensus 107 la~~l~~~l~~~----r~p~~~s~llaG~D~~-~~~~Ly~idp~G-~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~eea 180 (184)
+++.+++++|.+ .+|+++++||||||++ ++|+||.+||+| ++..++++|+|+|+++++++||+.|+++||.|||
T Consensus 81 la~~ls~~~~~~~~~~~rp~~v~~iiaG~D~~~~~~~Ly~~Dp~G~~~~~~~~~a~G~g~~~a~~~Le~~~~~~ms~eea 160 (219)
T TIGR03690 81 KANRLAAMVRGNLPAAMQGLAVVPLLAGYDLDAGAGRIFSYDVTGGRYEERGYHAVGSGSVFAKGALKKLYSPDLDEDDA 160 (219)
T ss_pred HHHHHHHHHHhhhhhccCCceEEEEEEEECCCCCCcEEEEEeCCCCeeecCCeEEEeccHHHHHHHHHhcCCCCcCHHHH
Confidence 999999998765 4699999999999964 689999999999 5888899999999999999999999999999999
Q ss_pred hhc
Q psy2074 181 MST 183 (184)
Q Consensus 181 ~~l 183 (184)
+++
T Consensus 161 i~l 163 (219)
T TIGR03690 161 LRV 163 (219)
T ss_pred HHH
Confidence 986
No 29
>cd03764 proteasome_beta_archeal Archeal proteasome, beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme for non-lysosomal protein degradation in both the cytosol and the nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are both members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=9.7e-41 Score=256.88 Aligned_cols=155 Identities=27% Similarity=0.461 Sum_probs=149.8
Q ss_pred ceEEEEEeCCeEEEEEcCccccCceeeecCCCceEEecCeEEEEecCChHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHH
Q psy2074 29 TTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGA 108 (184)
Q Consensus 29 ~t~igi~~~dgVvla~d~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~~~~la 108 (184)
+|+|||+++||||||+|+|.++|.++.+++.+||++|+++++++++|+.+|++.+.+.++.+++.|++.++++++++.++
T Consensus 1 tt~iai~~~dgvvia~d~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (188)
T cd03764 1 TTTVGIVCKDGVVLAADKRASMGNFIASKNVKKIFQIDDKIAMTIAGSVGDAQSLVRILKAEARLYELRRGRPMSIKALA 80 (188)
T ss_pred CcEEEEEeCCEEEEEEccccccCCEEecCCcccEEEccCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 68999999999999999999999998889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcC-CCcceeeEEEEEeCCCCeEEEEEcCCCceeecCeEEEecCHHhHHHHHhccCCCCCCHHHHhhcC
Q psy2074 109 KLFQELVYSYR-DSLTAGIICAGWDRKKGGQVYCIPLGGMLMRQKMAMGGSGSTYLYGHMDNQFKENMTKKEAMSTF 184 (184)
Q Consensus 109 ~~l~~~l~~~r-~p~~~s~llaG~D~~~~~~Ly~idp~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~eea~~l~ 184 (184)
+++++++|.++ +||++++||||||+ ++|+||.+||+|++.+++++|+|+|+++++++||+.|+++|++|||++++
T Consensus 81 ~~i~~~~~~~~~~P~~~~~lvaG~d~-~~~~ly~~D~~G~~~~~~~~a~G~g~~~~~~~L~~~~~~~~~~~ea~~l~ 156 (188)
T cd03764 81 TLLSNILNSSKYFPYIVQLLIGGVDE-EGPHLYSLDPLGSIIEDKYTATGSGSPYAYGVLEDEYKEDMTVEEAKKLA 156 (188)
T ss_pred HHHHHHHHhcCCCCcEEEEEEEEEeC-CCCEEEEECCCCCEEEcCEEEEcCcHHHHHHHHHhcCCCCCCHHHHHHHH
Confidence 99999999876 49999999999998 78999999999999999999999999999999999999999999999863
No 30
>cd01912 proteasome_beta proteasome beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.7e-40 Score=255.51 Aligned_cols=156 Identities=38% Similarity=0.589 Sum_probs=150.9
Q ss_pred ceEEEEEeCCeEEEEEcCccccCceeeecCCCceEEecCeEEEEecCChHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHH
Q psy2074 29 TTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGA 108 (184)
Q Consensus 29 ~t~igi~~~dgVvla~d~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~~~~la 108 (184)
+|+|||+++||||||+|+|.+.+..+..++.+|||+|++++++++||+.+|++.+.++++.+++.|++.++++++++.++
T Consensus 1 tt~i~i~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (189)
T cd01912 1 TTIVGIKGKDGVVLAADTRASAGSLVASRNFDKIFKISDNILLGTAGSAADTQALTRLLKRNLRLYELRNGRELSVKAAA 80 (189)
T ss_pred CcEEEEEeCCEEEEEEcCCcccCcEEEcCCcCcEEEccCCEEEEccccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 68999999999999999999998887789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCC-CcceeeEEEEEeCCCCeEEEEEcCCCceeecCeEEEecCHHhHHHHHhccCCCCCCHHHHhhcC
Q psy2074 109 KLFQELVYSYRD-SLTAGIICAGWDRKKGGQVYCIPLGGMLMRQKMAMGGSGSTYLYGHMDNQFKENMTKKEAMSTF 184 (184)
Q Consensus 109 ~~l~~~l~~~r~-p~~~s~llaG~D~~~~~~Ly~idp~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~eea~~l~ 184 (184)
+++++++|++++ |+++++||||+|++++|+||.+||+|++.+++++|+|+++++++++||+.|+++||+|||++++
T Consensus 81 ~~l~~~~~~~~~~P~~~~~iv~G~d~~~~~~l~~id~~G~~~~~~~~a~G~~~~~~~~~Le~~~~~~~s~~ea~~~~ 157 (189)
T cd01912 81 NLLSNILYSYRGFPYYVSLIVGGVDKGGGPFLYYVDPLGSLIEAPFVATGSGSKYAYGILDRGYKPDMTLEEAVELV 157 (189)
T ss_pred HHHHHHHHhcCCCCeEEEEEEEEEcCCCCeEEEEECCCCCeEecCEEEEcccHHHHHHHHHhccCCCCCHHHHHHHH
Confidence 999999999987 9999999999998789999999999999999999999999999999999999999999999863
No 31
>TIGR03691 20S_bact_alpha proteasome, alpha subunit, bacterial type. Members of this family are the alpha subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In most Actinobacteria (an exception is Propionibacterium acnes), the proteasome is accompanied by a system of tagging proteins for degradation with Pup.
Probab=100.00 E-value=3.4e-40 Score=260.46 Aligned_cols=157 Identities=12% Similarity=0.229 Sum_probs=146.1
Q ss_pred ccccccccCCceEEEEEeCCeEEEEEcCccccCceeeecCCCceEEecCeEEEEecCChHHHHHHHHHHHHHHHHHHHHh
Q psy2074 19 DWLTAKHSCGTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMEL 98 (184)
Q Consensus 19 eya~~~~~~g~t~igi~~~dgVvla~d~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~ 98 (184)
|||.+|+++|+|+|||+++||||||+|++. ++.+||++|++|++|+++|+.+|++.+++.++.+++.|++.+
T Consensus 18 EYA~kav~~g~T~VGIk~kdgVVLaaek~~--------~~~~KI~~I~d~ig~~~sG~~~D~~~lv~~~r~~a~~~~~~~ 89 (228)
T TIGR03691 18 ELARKGIARGRSVVVLTYADGILFVAENPS--------RSLHKISELYDRIGFAAVGKYNEFENLRRAGIRYADMRGYSY 89 (228)
T ss_pred HHHHHHHHcCCcEEEEEeCCeEEEEEecCC--------CCcCcEEEecCCEEEEEcCCHHHHHHHHHHHHHHHHHHhhhc
Confidence 999999999999999999999999999972 357899999999999999999999999999999999999999
Q ss_pred C-CCCcHHHHHHHHHHHHHh----cCCCcceeeEEEEEeC-CCCeEEEEEcCCCceeecC-eEEEecCHHhHHHHHhccC
Q psy2074 99 G-EEPLVYSGAKLFQELVYS----YRDSLTAGIICAGWDR-KKGGQVYCIPLGGMLMRQK-MAMGGSGSTYLYGHMDNQF 171 (184)
Q Consensus 99 ~-~~~~~~~la~~l~~~l~~----~r~p~~~s~llaG~D~-~~~~~Ly~idp~G~~~~~~-~~a~G~g~~~~~~~Le~~~ 171 (184)
+ .+++++.+|+.+++.++. +.+||+|++|++|||+ +.||+||.+||+|++.+++ ++|+|++++.++++||+.|
T Consensus 90 ~~~~~~v~~la~~~tq~~~~~~~~~~RP~gvs~Li~G~d~~~~gp~Ly~vDpsG~~~~~~~~~aiG~gs~~a~~~Lek~y 169 (228)
T TIGR03691 90 DRRDVTGRGLANAYAQTLGTIFTEQQKPYEVEICVAEVGETPDQDQLYRITFDGSIVDERGFVVMGGTTEPIATALKESY 169 (228)
T ss_pred CCCCccHHHHHHHHHhhcccccccccCcceEEEEEEEEcCCCCCCEEEEECCCCCceeccceEEECCChHHHHHHHHHhc
Confidence 8 689999999988887653 3579999999999985 4789999999999999976 8999999999999999999
Q ss_pred CCCCCHHHHhhc
Q psy2074 172 KENMTKKEAMST 183 (184)
Q Consensus 172 ~~~~s~eea~~l 183 (184)
+++||.|||+++
T Consensus 170 ~~~ms~eeai~l 181 (228)
T TIGR03691 170 RDGLSLADALGL 181 (228)
T ss_pred CCCCCHHHHHHH
Confidence 999999999987
No 32
>cd01906 proteasome_protease_HslV proteasome_protease_HslV. This group contains the eukaryotic proteosome alpha and beta subunits and the prokaryotic protease hslV subunit. Proteasomes are large multimeric self-compartmentalizing proteases, involved in the clearance of misfolded proteins, the breakdown of regulatory proteins, and the processing of proteins such as the preparation of peptides for immune presentation. Two main proteasomal types are distinguished by their different tertiary structures: the eukaryotic/archeal 20S proteasome and the prokaryotic proteasome-like heat shock protein encoded by heat shock locus V, hslV. The proteasome core particle is a highly conserved cylindrical structure made up of non-identical subunits that have their active sites on the inner walls of a large central cavity. The proteasome subunits of bacteria, archaea, and eukaryotes all share a conserved Ntn (N terminal nucleophile) hydrolase fold and a catalytic mechanism involving an N-terminal nucleo
Probab=100.00 E-value=2.2e-39 Score=247.53 Aligned_cols=156 Identities=33% Similarity=0.526 Sum_probs=150.2
Q ss_pred ceEEEEEeCCeEEEEEcCccccCceeeecCCCceEEecCeEEEEecCChHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHH
Q psy2074 29 TTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGA 108 (184)
Q Consensus 29 ~t~igi~~~dgVvla~d~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~~~~la 108 (184)
+|+|||+++||||||+|+|.+++....+++.+|||+|+++++++++|..+|++.+.+.++.++..|++.++++++++.++
T Consensus 1 tt~igi~~~dgvvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (182)
T cd01906 1 TTIVGIKGKDGVVLAADKRVTSGLLVASSTVEKIFKIDDHIGCAFAGLAADAQTLVERLRKEAQLYRLRYGEPIPVEALA 80 (182)
T ss_pred CcEEEEEeCCEEEEEEecccCCcCeecCCCcceEEEECCCEEEEEeeCHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 68999999999999999999998777688999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcC---CCcceeeEEEEEeCCCCeEEEEEcCCCceeecCeEEEecCHHhHHHHHhccCCCCCCHHHHhhcC
Q psy2074 109 KLFQELVYSYR---DSLTAGIICAGWDRKKGGQVYCIPLGGMLMRQKMAMGGSGSTYLYGHMDNQFKENMTKKEAMSTF 184 (184)
Q Consensus 109 ~~l~~~l~~~r---~p~~~s~llaG~D~~~~~~Ly~idp~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~eea~~l~ 184 (184)
+++++++|.++ +|+++++|+||+|++++|+||.+||+|++.+++++|+|+++++++++||+.|+++||.+||++++
T Consensus 81 ~~l~~~~~~~~~~~~p~~~~~lv~G~d~~~~~~Ly~id~~G~~~~~~~~a~G~g~~~~~~~L~~~~~~~~s~~ea~~l~ 159 (182)
T cd01906 81 KLLANLLYEYTQSLRPLGVSLLVAGVDEEGGPQLYSVDPSGSYIEYKATAIGSGSQYALGILEKLYKPDMTLEEAIELA 159 (182)
T ss_pred HHHHHHHHHhCCCccChheEEEEEEEeCCCCcEEEEECCCCCEeeccEEEECCCcHHHHHHHHHHccCCCCHHHHHHHH
Confidence 99999999987 69999999999998689999999999999999999999999999999999999999999999863
No 33
>KOG0863|consensus
Probab=100.00 E-value=1.6e-40 Score=253.44 Aligned_cols=178 Identities=17% Similarity=0.246 Sum_probs=163.2
Q ss_pred CCcccc----cccccCCCCCCCccccccccCCceEEEEEeCCeEEEEEcCccccCceeeecCCCceEEecCeEEEEecCC
Q psy2074 1 MWNKDY----NVNAYHGGVEAPDWLTAKHSCGTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGS 76 (184)
Q Consensus 1 ~~~~~~----~~~~~~G~l~qveya~~~~~~g~t~igi~~~dgVvla~d~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~ 76 (184)
||||.| ++.+|+||++|||||++|+++|+++||+|.++-.||++=+|..+. .++..+|||+||+|++++++|+
T Consensus 1 Mfrnqyd~d~t~wsPqGrl~QvEya~EavkqGsatVGLks~thaVLvAl~r~~se---Lss~QkKi~~iD~h~g~siAGL 77 (264)
T KOG0863|consen 1 MFRNQYDNDVTTWSPQGRLHQVEYAMEAVKQGSATVGLKSRTHAVLVALKRAQSE---LSSHQKKIFKIDDHIGISIAGL 77 (264)
T ss_pred CCcccccCceeEECCcceehHHHHHHHHHhcccceEeecccceEEEeeeccchhH---HHHhhheeEecccccceEEecc
Confidence 888765 567999999999999999999999999999998888887776653 3567799999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHhc-----CCCcceeeEEEEEeCCCCeEEEEEcCCCceeec
Q psy2074 77 AADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQELVYSY-----RDSLTAGIICAGWDRKKGGQVYCIPLGGMLMRQ 151 (184)
Q Consensus 77 ~~D~~~l~~~l~~~~~~~~~~~~~~~~~~~la~~l~~~l~~~-----r~p~~~s~llaG~D~~~~~~Ly~idp~G~~~~~ 151 (184)
++|++.+.++++.+|..+++.+++++++..+...+.+-+|.. ||||||.++++|+|+ .||+||.++|+|.+.++
T Consensus 78 t~Darvl~~Ylr~ec~~~~~~~~r~~pv~rl~~~l~~k~q~~Tq~ygrRpYGVGllv~gYDe-~G~hl~e~~Psg~v~e~ 156 (264)
T KOG0863|consen 78 TADARVLSRYLRQECLNSRFIYGRPLPVLRLVEDLGDKAQENTQRYGRRPYGVGLLVAGYDE-SGPHLYEFCPSGNVFEC 156 (264)
T ss_pred CcchHHHHHHHHHHHhhhhhccCCcccHHHHHHHHHHHHhhhhhhhCCccccceEEEEeecC-CCceeEEEcCCccEEEE
Confidence 999999999999999999999999999999998888877653 579999999999999 89999999999999999
Q ss_pred CeEEEecCHHhHHHHHhccCC--CCCCHHHHhh
Q psy2074 152 KMAMGGSGSTYLYGHMDNQFK--ENMTKKEAMS 182 (184)
Q Consensus 152 ~~~a~G~g~~~~~~~Le~~~~--~~~s~eea~~ 182 (184)
+..+||+.++.+.++||+... ++++.||+++
T Consensus 157 ~g~sIGsRSQsARTyLEr~~e~f~~~~~eELI~ 189 (264)
T KOG0863|consen 157 KGMSIGSRSQSARTYLERNLEEFEDSSPEELIK 189 (264)
T ss_pred eeeecccchhhHHHHHHHHHHHHhcCCHHHHHH
Confidence 999999999999999999885 5999999886
No 34
>PF00227 Proteasome: Proteasome subunit; InterPro: IPR001353 ATP-dependent protease complexes are present in all three kingdoms of life, where they rid the cell of misfolded or damaged proteins and control the level of certain regulatory proteins. They include the proteasome in Eukaryotes, Archaea, and Actinomycetales and the HslVU (ClpQY, clpXP) complex in other eubacteria. Genes homologous to eubacterial HslV (ClpQ) and HslU (ClpY, clpX) have also been demonstrated in to be present in the genome of trypanosomatid protozoa []. The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). The prokaryotic ATP-dependent proteasome is coded for by the heat-shock locus VU (HslVU). It consists of HslV, the protease (MEROPS peptidase subfamily T1B), and HslU, IPR004491 from INTERPRO, the ATPase and chaperone belonging to the AAA/Clp/Hsp100 family. The crystal structure of Thermotoga maritima HslV has been determined to 2.1-A resolution. The structure of the dodecameric enzyme is well conserved compared to those from Escherichia coli and Haemophilus influenzae [, ]. This entry contains threonine peptidases and non-peptidase homologs belong to MEROPS peptidase family T1 (proteasome family, clan PB(T)). The family consists of the protease components of the archaeal and bacterial proteasomes and the alpha and beta subunits of the eukaryotic proteasome. ; GO: 0004298 threonine-type endopeptidase activity, 0051603 proteolysis involved in cellular protein catabolic process, 0005839 proteasome core complex; PDB: 3KRD_1 3H6F_M 2FHH_F 3HF9_F 2FHG_D 3HFA_B 3H6I_K 3MI0_A 3MFE_1 3MKA_F ....
Probab=100.00 E-value=2.9e-39 Score=248.39 Aligned_cols=159 Identities=27% Similarity=0.381 Sum_probs=145.4
Q ss_pred ccCCceEEEEEeCCeEEEEEcCccccCceeeecC-CCceEEecCeEEEEecCChHHHHHHHHHHHHHHHHHHHHhCCCCc
Q psy2074 25 HSCGTTIIAVEFDGGVVIGADSRSSTGAYVANRV-ADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPL 103 (184)
Q Consensus 25 ~~~g~t~igi~~~dgVvla~d~r~~~g~~~~~~~-~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~ 103 (184)
+++|+|+|||+++||||||+|+|.+.|..+..++ .+|||+|++|+++++||..+|++.++++++.+++.|++.++.+++
T Consensus 1 v~~G~t~vgi~~~dgvvla~d~~~~~g~~~~~~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~ 80 (190)
T PF00227_consen 1 VNNGTTVVGIKGKDGVVLAADKRISYGSKLRSPNTVDKIFKINDNIIIGFSGLTADFQYLIRRLREEAQEYRFSYGRPIS 80 (190)
T ss_dssp HHTSBEEEEEEESSEEEEEEEEEEEETTEEEESSTSSSEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHSSGTC
T ss_pred CCCCeEEEEEEECCEEEEEEccccccccccccccccceeeeccCcceeeccccccchHHHHhhhcccchhhhhccCcccc
Confidence 4689999999999999999999999888775655 799999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH----Hhc-CCCcceeeEEEEEeCCCCeEEEEEcCCCceeec-CeEEEecCHHhHHHHHhccCCCCCCH
Q psy2074 104 VYSGAKLFQELV----YSY-RDSLTAGIICAGWDRKKGGQVYCIPLGGMLMRQ-KMAMGGSGSTYLYGHMDNQFKENMTK 177 (184)
Q Consensus 104 ~~~la~~l~~~l----~~~-r~p~~~s~llaG~D~~~~~~Ly~idp~G~~~~~-~~~a~G~g~~~~~~~Le~~~~~~~s~ 177 (184)
++.+++.+++.+ +.. ++|+++++|++|||++++|+||.+||+|++.++ +++|+|+|+++++++||+.|+++|++
T Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~p~~~~~li~G~d~~~~~~l~~vd~~G~~~~~~~~~aiG~g~~~~~~~l~~~~~~~~~~ 160 (190)
T PF00227_consen 81 PEYLAKAIASLIQNYTYRSGRRPYGVSLLIAGYDEDGGPQLYSVDPSGSYIECKRFAAIGSGSQFAQPILEKLYKPDLSL 160 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTSTTSEEEEEEEEETTTEEEEEEEETTSEEEEBSSEEEESTTHHHHHHHHHHHHTTTSSH
T ss_pred chhhhhhhHHHHhhhcccccccCccccceeeeeccccccceeeeccccccccccccccchhcchhhhHHHHhhccCCCCH
Confidence 996665555544 433 569999999999998677999999999999999 69999999999999999999999999
Q ss_pred HHHhhc
Q psy2074 178 KEAMST 183 (184)
Q Consensus 178 eea~~l 183 (184)
+||+++
T Consensus 161 ~ea~~~ 166 (190)
T PF00227_consen 161 EEAIEL 166 (190)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999986
No 35
>cd03765 proteasome_beta_bacterial Bacterial proteasome, beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1e-38 Score=252.58 Aligned_cols=154 Identities=18% Similarity=0.233 Sum_probs=140.7
Q ss_pred ceEEEEEeCCeEEEEEcCccccCceeeecCCCceEEec----CeEEEEecCChHHHHHHHHHHHHHHHHHHHHhCC-CCc
Q psy2074 29 TTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVT----DNIYCCRSGSAADTQAISDFVSYNLDLQRMELGE-EPL 103 (184)
Q Consensus 29 ~t~igi~~~dgVvla~d~r~~~g~~~~~~~~~Ki~~i~----~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~-~~~ 103 (184)
|.+|||+++||||||+|+|.+.+.. ..++.+||++|+ +|++|+.||+.+|++.+++.+|.++++|++++++ +++
T Consensus 1 ~~~vGIk~kdGVVLaadkr~~~~l~-~~~~~~KI~~I~~~~d~~I~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~~~~ 79 (236)
T cd03765 1 TYCLGIKLDAGLVFASDSRTNAGVD-NISTYRKMFVFSVPGERVIVLLTAGNLATTQAVISLLQRDLEDPEETNLLNAPT 79 (236)
T ss_pred CeEEEEEeCCeEEEEEccCccCCCc-cccccceEEEecCCCCCEEEEEcCCcHHHHHHHHHHHHHHHHhhHHhhCCCCCC
Confidence 5689999999999999999988644 344789999998 9999999999999999999999999999999999 899
Q ss_pred HHHHHHHHHHHHHhc-----------CCCcceeeEEEEEeCCCCeEEEEEcCCCceeec----CeEEEecCHHhHHHHHh
Q psy2074 104 VYSGAKLFQELVYSY-----------RDSLTAGIICAGWDRKKGGQVYCIPLGGMLMRQ----KMAMGGSGSTYLYGHMD 168 (184)
Q Consensus 104 ~~~la~~l~~~l~~~-----------r~p~~~s~llaG~D~~~~~~Ly~idp~G~~~~~----~~~a~G~g~~~~~~~Le 168 (184)
++.+|+.++++++.. .+||++++||+|||++.||+||.+||+|++.++ +|+|+|. +++++++||
T Consensus 80 v~~la~~i~~~l~~~~~q~~~~~~~~~rp~gvslIigG~D~~~Gp~LY~idpsG~~~e~~a~~~~~AiG~-~~~a~~~Le 158 (236)
T cd03765 80 MFDAARYVGETLREVQEQDREALKKAGIDFSASFILGGQIKGEEPRLFLIYPQGNFIEATPDTPFLQIGE-TKYGKPILD 158 (236)
T ss_pred HHHHHHHHHHHHHHHHhhcccccccCCcceEEEEEEEeEECCCCCEEEEECCCCCEEeecCCCceeeeCC-chhhHHHHH
Confidence 999999999986551 369999999999997689999999999999998 6789996 799999999
Q ss_pred ccCCCCCCHHHHhhcC
Q psy2074 169 NQFKENMTKKEAMSTF 184 (184)
Q Consensus 169 ~~~~~~~s~eea~~l~ 184 (184)
+.|+++||+|||++++
T Consensus 159 k~yk~~ms~eeai~la 174 (236)
T cd03765 159 RVITPDTSLEDAAKCA 174 (236)
T ss_pred HhcCCCCCHHHHHHHH
Confidence 9999999999999863
No 36
>KOG0182|consensus
Probab=100.00 E-value=1.6e-38 Score=239.74 Aligned_cols=177 Identities=19% Similarity=0.230 Sum_probs=167.8
Q ss_pred ccccccCCCCCCCccccccccC-CceEEEEEeCCeEEEEEcCccccCceeeecCCCceEEecCeEEEEecCChHHHHHHH
Q psy2074 6 YNVNAYHGGVEAPDWLTAKHSC-GTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAIS 84 (184)
Q Consensus 6 ~~~~~~~G~l~qveya~~~~~~-g~t~igi~~~dgVvla~d~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~ 84 (184)
-++++|+|||+|||||.+|+++ |-|.|++++||++|+++.++++. .++.++....+|+|+++|+|+++|..+|++..+
T Consensus 13 itIFspeGrLyQVEYafkAin~~gltsVavrgkDcavvvsqKkvpD-KLld~~tvt~~f~itk~ig~v~tG~~aDar~~v 91 (246)
T KOG0182|consen 13 ITIFSPEGRLYQVEYAFKAINQAGLTSVAVRGKDCAVVVTQKKVPD-KLLDSSTVTHLFRITKKIGCVITGMIADARSQV 91 (246)
T ss_pred EEEECCCceEEeeehHHHHhhcCCCceEEEcCCceEEEEecccCcc-cccccccceeEEEeeccceEEEecCCcchHHHH
Confidence 4678999999999999999999 99999999999999999999997 676888899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHhcC-----CCcceeeEEEEEeCCCCeEEEEEcCCCceeecCeEEEecC
Q psy2074 85 DFVSYNLDLQRMELGEEPLVYSGAKLFQELVYSYR-----DSLTAGIICAGWDRKKGGQVYCIPLGGMLMRQKMAMGGSG 159 (184)
Q Consensus 85 ~~l~~~~~~~~~~~~~~~~~~~la~~l~~~l~~~r-----~p~~~s~llaG~D~~~~~~Ly~idp~G~~~~~~~~a~G~g 159 (184)
++++.++.++++++|.+||++.||+.+++..|.++ ||+||.+++.|+|++.||.+|.+||.|-+..+++.|.|..
T Consensus 92 ~rar~eAa~~~yk~Gyemp~DiL~k~~Ad~~QvytQ~a~mRplg~~~~~i~~D~E~gP~vYk~DpAGyy~g~kAtaaG~K 171 (246)
T KOG0182|consen 92 QRARYEAAEFRYKYGYEMPCDILAKRMADKSQVYTQNAAMRPLGVAATLIGVDEERGPSVYKTDPAGYYYGFKATAAGVK 171 (246)
T ss_pred HHHHHHHHhhhhhcCCCCCHHHHHHHHhhHHHHHhhhhhhcccceeEEEEEeccccCcceEeecCccccccceeeecccc
Confidence 99999999999999999999999999999887764 5999999999999999999999999999999999999999
Q ss_pred HHhHHHHHhccCCCC--CCHHHHhhc
Q psy2074 160 STYLYGHMDNQFKEN--MTKKEAMST 183 (184)
Q Consensus 160 ~~~~~~~Le~~~~~~--~s~eea~~l 183 (184)
...+..+||+.|+++ +|.+|++++
T Consensus 172 q~e~tsfLEKk~Kk~~~~t~~e~ve~ 197 (246)
T KOG0182|consen 172 QQEATSFLEKKYKKDIDLTFEETVET 197 (246)
T ss_pred hhhHHHHHHHhhccCccchHHHHHHH
Confidence 999999999999877 679998875
No 37
>KOG0175|consensus
Probab=100.00 E-value=3.7e-35 Score=227.10 Aligned_cols=158 Identities=32% Similarity=0.585 Sum_probs=154.5
Q ss_pred ccCCceEEEEEeCCeEEEEEcCccccCceeeecCCCceEEecCeEEEEecCChHHHHHHHHHHHHHHHHHHHHhCCCCcH
Q psy2074 25 HSCGTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLV 104 (184)
Q Consensus 25 ~~~g~t~igi~~~dgVvla~d~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~~ 104 (184)
..+|||++|+++++|||+|+|+|.+.|.++.++.++||.+|+++++-+++|-.+|++.+-+.|.++|++|++++++.|+|
T Consensus 68 ~~hGTTTLAF~f~~GvivAvDSRAs~G~YIasqtv~KVIeIn~ylLGTmAGgAADCqfWer~L~kecRL~eLRnkeriSV 147 (285)
T KOG0175|consen 68 FAHGTTTLAFKFKGGVIVAVDSRASAGSYIASQTVKKVIEINPYLLGTMAGGAADCQFWERVLAKECRLHELRNKERISV 147 (285)
T ss_pred ecCCceEEEEEecCcEEEEEeccccccceeechhhceeeeechhhhhcccCcchhhHHHHHHHHHHHHHHHHhcCcceeh
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCC-CcceeeEEEEEeCCCCeEEEEEcCCCceeecCeEEEecCHHhHHHHHhccCCCCCCHHHHhhc
Q psy2074 105 YSGAKLFQELVYSYRD-SLTAGIICAGWDRKKGGQVYCIPLGGMLMRQKMAMGGSGSTYLYGHMDNQFKENMTKKEAMST 183 (184)
Q Consensus 105 ~~la~~l~~~l~~~r~-p~~~s~llaG~D~~~~~~Ly~idp~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~eea~~l 183 (184)
...+++|++++|+|+. .+.+..+|+|||+ .||.||++|..|+-.+.+-.++|||+.+|+++||+.|++|||.|||..|
T Consensus 148 saASKllsN~~y~YkGmGLsmGtMi~G~Dk-~GP~lyYVDseG~Rl~G~~FSVGSGs~yAYGVLDsgYr~dls~eEA~~L 226 (285)
T KOG0175|consen 148 SAASKLLSNMVYQYKGMGLSMGTMIAGWDK-KGPGLYYVDSEGTRLSGDLFSVGSGSTYAYGVLDSGYRYDLSDEEAYDL 226 (285)
T ss_pred HHHHHHHHHHHhhccCcchhheeeEeeccC-CCCceEEEcCCCCEecCceEeecCCCceeEEeeccCCCCCCCHHHHHHH
Confidence 9999999999999997 7999999999999 8999999999999999999999999999999999999999999999876
No 38
>KOG0179|consensus
Probab=100.00 E-value=1.6e-34 Score=217.67 Aligned_cols=159 Identities=26% Similarity=0.320 Sum_probs=152.2
Q ss_pred ccCCceEEEEEeCCeEEEEEcCccccCceeeecCCCceEEecCeEEEEecCChHHHHHHHHHHHHHHHHHHHHhCCCCcH
Q psy2074 25 HSCGTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLV 104 (184)
Q Consensus 25 ~~~g~t~igi~~~dgVvla~d~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~~ 104 (184)
..||+|+|||++.|+.|+|+|+|.++|..+.+++.+|||++.|+++++.+|+.+|...|.+.++...+.|++++...|++
T Consensus 26 ~~NGGT~vaIaG~dFavvA~DTR~s~gy~I~sR~~~Ki~~l~D~~vl~~sGF~aD~l~L~k~i~~r~~~Y~~~h~k~ms~ 105 (235)
T KOG0179|consen 26 EDNGGTTVAIAGEDFAVVAGDTRMSSGYNINSRDQSKIFKLGDNIVLGSSGFYADTLALVKVIKSRIKQYEHDHNKKMSI 105 (235)
T ss_pred ccCCceEEEEcCCceEEEecccccccceeeeccccchheeccCceEEecccchhhHHHHHHHHHHHHHHHhhcccccccH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCC-CcceeeEEEEEeCCCCeEEEEEcCCCceeecCeEEEecCHHhHHHHHhccCC-----------
Q psy2074 105 YSGAKLFQELVYSYRD-SLTAGIICAGWDRKKGGQVYCIPLGGMLMRQKMAMGGSGSTYLYGHMDNQFK----------- 172 (184)
Q Consensus 105 ~~la~~l~~~l~~~r~-p~~~s~llaG~D~~~~~~Ly~idp~G~~~~~~~~a~G~g~~~~~~~Le~~~~----------- 172 (184)
..+|++|+..||.+|+ |+.+..+|+|+|+++++.+|+.||.|++++..+.|.|+++.+++++||+...
T Consensus 106 ~s~A~lls~~LY~kRFFPYYv~~ilaGiDeeGKG~VySyDPvGsyer~~~~AgGsa~~mI~PfLDnQi~~kn~~~e~~~~ 185 (235)
T KOG0179|consen 106 HSAAQLLSTILYSKRFFPYYVFNILAGIDEEGKGAVYSYDPVGSYERVTCRAGGSAASMIQPFLDNQIGHKNQNLENAER 185 (235)
T ss_pred HHHHHHHHHHHhhcccccceeeeeeecccccCceeEEeecCCcceeeeeeecCCcchhhhhhhhhhhccCcCcccccCcc
Confidence 9999999999999997 9999999999999999999999999999999999999999999999997652
Q ss_pred CCCCHHHHhhc
Q psy2074 173 ENMTKKEAMST 183 (184)
Q Consensus 173 ~~~s~eea~~l 183 (184)
+.+|+|||++|
T Consensus 186 ~~Ls~e~ai~l 196 (235)
T KOG0179|consen 186 TPLSLERAIRL 196 (235)
T ss_pred cccCHHHHHHH
Confidence 46899999886
No 39
>KOG0173|consensus
Probab=100.00 E-value=1.4e-34 Score=223.32 Aligned_cols=163 Identities=32% Similarity=0.599 Sum_probs=158.8
Q ss_pred cccccccCCceEEEEEeCCeEEEEEcCccccCceeeecCCCceEEecCeEEEEecCChHHHHHHHHHHHHHHHHHHHHhC
Q psy2074 20 WLTAKHSCGTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELG 99 (184)
Q Consensus 20 ya~~~~~~g~t~igi~~~dgVvla~d~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~ 99 (184)
=++++.+.|||++|+++|||||+++|+|.+.|..+.++++.||+.|.++|+||.+|..+|...+.+.+..+.+.|++..+
T Consensus 29 k~p~~tkTGTtIvgv~~k~gvIlgADtRaT~G~IvaDKnC~KIH~ia~~IyccGAGtAADte~vt~m~ss~l~Lh~l~t~ 108 (271)
T KOG0173|consen 29 KAPKATKTGTTIVGVIFKDGVILGADTRATEGPIVADKNCEKIHFIAPNIYCCGAGTAADTEMVTRMISSNLELHRLNTG 108 (271)
T ss_pred CCCcccccCcEEEEEEeCCeEEEeecccccCCCeeecchhHHHhhcccceEEccCCchhhHHHHHHHHHHHHHHHHhccC
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHhcCCCcceeeEEEEEeCCCCeEEEEEcCCCceeecCeEEEecCHHhHHHHHhccCCCCCCHHH
Q psy2074 100 EEPLVYSGAKLFQELVYSYRDSLTAGIICAGWDRKKGGQVYCIPLGGMLMRQKMAMGGSGSTYLYGHMDNQFKENMTKKE 179 (184)
Q Consensus 100 ~~~~~~~la~~l~~~l~~~r~p~~~s~llaG~D~~~~~~Ly~idp~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~ee 179 (184)
+.+.|-...+++.++|+.|+.-.+..+|++|+|. .||+||.+.|.|+....+|.++|||+..++++||..|+|||+.||
T Consensus 109 R~~rVv~A~~mlkQ~LFrYqG~IgA~LiiGGvD~-TGpHLy~i~phGStd~~Pf~alGSGslaAmsvlEsr~k~dlt~ee 187 (271)
T KOG0173|consen 109 RKPRVVTALRMLKQHLFRYQGHIGAALILGGVDP-TGPHLYSIHPHGSTDKLPFTALGSGSLAAMSVLESRWKPDLTKEE 187 (271)
T ss_pred CCCceeeHHHHHHHHHHHhcCcccceeEEccccC-CCCceEEEcCCCCcCccceeeeccchHHHHHHHHHhcCcccCHHH
Confidence 9999999999999999999999999999999999 899999999999999999999999999999999999999999999
Q ss_pred Hhhc
Q psy2074 180 AMST 183 (184)
Q Consensus 180 a~~l 183 (184)
|.+|
T Consensus 188 a~~L 191 (271)
T KOG0173|consen 188 AIKL 191 (271)
T ss_pred HHHH
Confidence 9987
No 40
>KOG0174|consensus
Probab=100.00 E-value=1.2e-34 Score=216.16 Aligned_cols=160 Identities=63% Similarity=1.058 Sum_probs=156.1
Q ss_pred cccCCceEEEEEeCCeEEEEEcCccccCceeeecCCCceEEecCeEEEEecCChHHHHHHHHHHHHHHHHHHHHhCCCCc
Q psy2074 24 KHSCGTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPL 103 (184)
Q Consensus 24 ~~~~g~t~igi~~~dgVvla~d~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~ 103 (184)
.+..|||++|+.+++||||++|+|.+.|.++.++-.+|+-+|.|+|+||-||..+|.|.+.+.++..+..|...++++++
T Consensus 15 evstGTTImAv~y~gGVvlGaDSRTs~GayvanRvtDKlT~itD~i~cCRSGSAADtQaiaD~~~Y~L~~~~~q~~~~p~ 94 (224)
T KOG0174|consen 15 EVSTGTTIMAVEYDGGVVLGADSRTSTGAYVANRVTDKLTPITDNIYCCRSGSAADTQAIADIVRYHLELYTIQENKPPL 94 (224)
T ss_pred ccccCceEEEEEEcCcEEEeccCCccchHHHHhhhcccceeccccEEEecCCchhhHHHHHHHHHHHHHHhhhhcCCCch
Confidence 58899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCcceeeEEEEEeCCCCeEEEEEcCCCceeecCeEEEecCHHhHHHHHhccCCCCCCHHHHhhc
Q psy2074 104 VYSGAKLFQELVYSYRDSLTAGIICAGWDRKKGGQVYCIPLGGMLMRQKMAMGGSGSTYLYGHMDNQFKENMTKKEAMST 183 (184)
Q Consensus 104 ~~~la~~l~~~l~~~r~p~~~s~llaG~D~~~~~~Ly~idp~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~eea~~l 183 (184)
+...|+.++++.|++|..+...+||||||+..|.++|.|-..|+..+.++..-|||+.++++++|..|+|+|++||++++
T Consensus 95 v~~aA~l~r~~~Y~~re~L~AgliVAGwD~~~gGqVY~iplGG~l~rq~~aIgGSGStfIYGf~D~~~r~nMt~EE~~~f 174 (224)
T KOG0174|consen 95 VHTAASLFREICYNYREMLSAGLIVAGWDEKEGGQVYSIPLGGSLTRQPFAIGGSGSTFIYGFCDANWRPNMTLEECVRF 174 (224)
T ss_pred HHHHHHHHHHHHHhCHHhhhcceEEeecccccCceEEEeecCceEeecceeeccCCceeeeeeehhhcCCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999874
No 41
>KOG0177|consensus
Probab=100.00 E-value=1.7e-34 Score=214.48 Aligned_cols=156 Identities=24% Similarity=0.387 Sum_probs=150.8
Q ss_pred ceEEEEEeCCeEEEEEcCccccCceeeecCCCceEEecCeEEEEecCChHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHH
Q psy2074 29 TTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGA 108 (184)
Q Consensus 29 ~t~igi~~~dgVvla~d~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~~~~la 108 (184)
.+++||++.|+|++|+|+...++.++..++.+|++++++++.|+++|..+|.-++.+++++++++|++++|.+++|+..|
T Consensus 2 e~llGIkg~dfvilAsDt~~~~si~~~k~~~dK~~~ls~~~lm~~~Ge~GDt~qF~eyi~~Ni~LYkirnGyeLSp~~aa 81 (200)
T KOG0177|consen 2 ETLLGIKGPDFVILASDTSAARSILVLKDDHDKIHRLSDHILMATVGEAGDTVQFTEYIQKNIQLYKIRNGYELSPSAAA 81 (200)
T ss_pred ceEEEeecCCEEEEeecchhhcceEEecccccceEEeccceeeeeecCCCceehHHHHHHhhhhHHhhhcCCcCCHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhc---CCCcceeeEEEEEeCCCCeEEEEEcCCCceeecCeEEEecCHHhHHHHHhccCCCCCCHHHHhhcC
Q psy2074 109 KLFQELVYSY---RDSLTAGIICAGWDRKKGGQVYCIPLGGMLMRQKMAMGGSGSTYLYGHMDNQFKENMTKKEAMSTF 184 (184)
Q Consensus 109 ~~l~~~l~~~---r~p~~~s~llaG~D~~~~~~Ly~idp~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~eea~~l~ 184 (184)
+++++.+.++ |+|+.|++++||+|++.||.||++|..|+..+.++++.|.++.+..++||+.|+|+||.|||+++|
T Consensus 82 hFtR~~La~~LRsr~~yqV~~LvaGYd~~~gp~L~~iDyla~~~~vpy~~hGy~~~f~~sIlDr~Y~pdmt~eea~~lm 160 (200)
T KOG0177|consen 82 HFTRRELAESLRSRTPYQVNILVAGYDPEEGPELYYIDYLATLVSVPYAAHGYGSYFCLSILDRYYKPDMTIEEALDLM 160 (200)
T ss_pred HHHHHHHHHHHhcCCCceEEEEEeccCCCCCCceeeehhhhhcccCCcccccchhhhhHHHHHhhhCCCCCHHHHHHHH
Confidence 9999999765 459999999999999889999999999999999999999999999999999999999999999875
No 42
>KOG0180|consensus
Probab=100.00 E-value=8.2e-34 Score=208.13 Aligned_cols=159 Identities=20% Similarity=0.283 Sum_probs=153.3
Q ss_pred ccCCceEEEEEeCCeEEEEEcCccccCceeeecCCCceEEecCeEEEEecCChHHHHHHHHHHHHHHHHHHHHhCCCCcH
Q psy2074 25 HSCGTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLV 104 (184)
Q Consensus 25 ~~~g~t~igi~~~dgVvla~d~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~~ 104 (184)
..+|++++|+++|+||.||+|.|........+.+.+|||++.++.++|.+|+..|++.+.++++....+|+++.+++|.|
T Consensus 5 synGg~vvAM~gk~cvaIa~D~RlG~q~~tistdf~ki~~igdr~y~GL~glatDvqtl~~~~~fr~nLy~lre~R~i~P 84 (204)
T KOG0180|consen 5 SYNGGSVVAMAGKNCVAIASDLRLGVQSQTISTDFQKIFKIGDRLYLGLTGLATDVQTLLERLRFRKNLYELREEREIKP 84 (204)
T ss_pred eecCceEEEEeCCceEEEEeccccceeeeeeeccchhheecCCeeEEeccccchhHHHHHHHHHHHHhHHHhhhhcccCc
Confidence 35899999999999999999999988888889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCC-CcceeeEEEEEeCCCCeEEEEEcCCCceee-cCeEEEecCHHhHHHHHhccCCCCCCHHHHhh
Q psy2074 105 YSGAKLFQELVYSYRD-SLTAGIICAGWDRKKGGQVYCIPLGGMLMR-QKMAMGGSGSTYLYGHMDNQFKENMTKKEAMS 182 (184)
Q Consensus 105 ~~la~~l~~~l~~~r~-p~~~s~llaG~D~~~~~~Ly~idp~G~~~~-~~~~a~G~g~~~~~~~Le~~~~~~~s~eea~~ 182 (184)
+.+++++|.++|++|+ |+.+..+|||+|++++|.|..+|..|.... .+|++.|.+++.+++++|..|+|+|+.||+++
T Consensus 85 ~~~s~mvS~~lYekRfgpYf~~PvVAGl~~~~kPfIc~mD~IGc~~~~~DFVvsGTa~e~L~GmCE~ly~pnmepd~LFe 164 (204)
T KOG0180|consen 85 ETFSSMVSSLLYEKRFGPYFTEPVVAGLDDDNKPFICGMDLIGCIDAPKDFVVSGTASEQLYGMCEALYEPNMEPDELFE 164 (204)
T ss_pred HHHHHHHHHHHHHhhcCCcccceeEeccCCCCCeeEeecccccCcCccCCeEEecchHHHHHHHHHHhcCCCCCHHHHHH
Confidence 9999999999999997 999999999999999999999999999875 79999999999999999999999999999987
Q ss_pred c
Q psy2074 183 T 183 (184)
Q Consensus 183 l 183 (184)
.
T Consensus 165 t 165 (204)
T KOG0180|consen 165 T 165 (204)
T ss_pred H
Confidence 5
No 43
>PRK05456 ATP-dependent protease subunit HslV; Provisional
Probab=99.98 E-value=3.4e-31 Score=200.43 Aligned_cols=143 Identities=24% Similarity=0.317 Sum_probs=125.8
Q ss_pred CceEEEEEeCCeEEEEEcCccccCceeeecCCCceEEe-cCeEEEEecCChHHHHHHHHHHHHHHHHHHHHhCCCCcHHH
Q psy2074 28 GTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRV-TDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYS 106 (184)
Q Consensus 28 g~t~igi~~~dgVvla~d~r~~~g~~~~~~~~~Ki~~i-~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~~~~ 106 (184)
|+|+||++++||||||+|+|.+.|.++.+++.+||++| +++++|+.||..+|+|.+.+.++.+++.|+. ++ ++.
T Consensus 1 gtTivgi~~~dgVvlaaD~r~s~g~~v~~~~~~KI~~i~~d~i~~~~aG~~aD~q~l~~~l~~~~~~y~~----~~-~~~ 75 (172)
T PRK05456 1 GTTILAVRRNGKVAIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEEHQG----NL-LRA 75 (172)
T ss_pred CcEEEEEEECCEEEEEECCceEeCcEEEcCCCceEEEeCCCCEEEEEeccHHHHHHHHHHHHHHHHHccC----cc-HHH
Confidence 79999999999999999999999999999999999999 9999999999999999999999999999882 22 577
Q ss_pred HHHHHHHHH-HhcCCCcceeeEEEEEeCCCCeEEEEEcCCCceeec--CeEEEecCHHhHHHHHhccCC-CCCCHHHHhh
Q psy2074 107 GAKLFQELV-YSYRDSLTAGIICAGWDRKKGGQVYCIPLGGMLMRQ--KMAMGGSGSTYLYGHMDNQFK-ENMTKKEAMS 182 (184)
Q Consensus 107 la~~l~~~l-~~~r~p~~~s~llaG~D~~~~~~Ly~idp~G~~~~~--~~~a~G~g~~~~~~~Le~~~~-~~~s~eea~~ 182 (184)
+++.+..+. +.+++|+.+++|++ |. |+||.+||.|+..+. ++.++|||+.+++++||+.|+ |+| ||++
T Consensus 76 ~a~l~~~l~~~~~~~~l~~~~lv~--d~---~~ly~id~~G~~~~~~~~~~a~GSGs~~a~g~ld~~y~~~~m---eA~~ 147 (172)
T PRK05456 76 AVELAKDWRTDRYLRRLEAMLIVA--DK---EHSLIISGNGDVIEPEDGIIAIGSGGNYALAAARALLENTDL---SAEE 147 (172)
T ss_pred HHHHHHHHHhccCCCccEEEEEEE--cC---CcEEEECCCCcEeccCCCeEEEecCHHHHHHHHHHhhhcCCC---CHHH
Confidence 777665543 34456888999994 44 699999999999665 899999999999999999999 999 6655
Q ss_pred c
Q psy2074 183 T 183 (184)
Q Consensus 183 l 183 (184)
|
T Consensus 148 l 148 (172)
T PRK05456 148 I 148 (172)
T ss_pred H
Confidence 4
No 44
>cd01901 Ntn_hydrolase The Ntn hydrolases (N-terminal nucleophile) are a diverse superfamily of of enzymes that are activated autocatalytically via an N-terminally lcated nucleophilic amino acid. N-terminal nucleophile (NTN-) hydrolase superfamily, which contains a four-layered alpha, beta, beta, alpha core structure. This family of hydrolases includes penicillin acylase, the 20S proteasome alpha and beta subunits, and glutamate synthase. The mechanism of activation of these proteins is conserved, although they differ in their substrate specificities. All known members catalyze the hydrolysis of amide bonds in either proteins or small molecules, and each one of them is synthesized as a preprotein. For each, an autocatalytic endoproteolytic process generates a new N-terminal residue. This mature N-terminal residue is central to catalysis and acts as both a polarizing base and a nucleophile during the reaction. The N-terminal amino group acts as the proton acceptor and activates either t
Probab=99.97 E-value=2e-30 Score=192.65 Aligned_cols=155 Identities=31% Similarity=0.394 Sum_probs=148.4
Q ss_pred ceEEEEEeCCeEEEEEcCccccCceeeecCCCceEEecCeEEEEecCChHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHH
Q psy2074 29 TTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGA 108 (184)
Q Consensus 29 ~t~igi~~~dgVvla~d~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~~~~la 108 (184)
+|+||++++|||++|+|++.+.+......+.+|++.++++++++++|..+|++.+.++++++++.|++.++.++++..++
T Consensus 1 ~t~i~i~~~~gvila~d~~~~~~~~~~~~~~~ki~~~~~~~~~~~sG~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (164)
T cd01901 1 STSVAIKGKGGVVLAADKRLSSGLPVAGSPVIKIGKNEDGIAWGLAGLAADAQTLVRRLREALQLYRLRYGEPISVVALA 80 (164)
T ss_pred CcEEEEEeCCEEEEEEecccCccCeecCCCcceEEEecCCeEEEEecChHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 58999999999999999999998776578899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcC--CCcceeeEEEEEeCCCCeEEEEEcCCCceeec-CeEEEecCHHhHHHHHhccCCCCCCHHHHhhcC
Q psy2074 109 KLFQELVYSYR--DSLTAGIICAGWDRKKGGQVYCIPLGGMLMRQ-KMAMGGSGSTYLYGHMDNQFKENMTKKEAMSTF 184 (184)
Q Consensus 109 ~~l~~~l~~~r--~p~~~s~llaG~D~~~~~~Ly~idp~G~~~~~-~~~a~G~g~~~~~~~Le~~~~~~~s~eea~~l~ 184 (184)
+.+++.++.++ +|+++++|++|+|+ ++|+||.+||.|++.+. +++++|++++.+.++|++.|+++|+.+||++++
T Consensus 81 ~~~~~~~~~~~~~~p~~~~~iiag~~~-~~~~l~~id~~g~~~~~~~~~~~G~~~~~~~~~l~~~~~~~~~~~~~~~~~ 158 (164)
T cd01901 81 KELAKLLQVYTQGRPFGVNLIVAGVDE-GGGNLYYIDPSGPVIENPGAVATGSRSQRAKSLLEKLYKPDMTLEEAVELA 158 (164)
T ss_pred HHHHHHHHHhcCCCCcceEEEEEEEcC-CCCEEEEECCCcCEeecCcEEEECCCCHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 99999999887 69999999999998 89999999999999999 999999999999999999999999999998763
No 45
>cd01913 protease_HslV Protease HslV and the ATPase/chaperone HslU are part of an ATP-dependent proteolytic system that is the prokaryotic homolog of the proteasome. HslV is a dimer of hexamers (a dodecamer) that forms a central proteolytic chamber with active sites on the interior walls of the cavity. HslV shares significant sequence and structural similarity with the proteasomal beta-subunit and both are members of the Ntn-family of hydrolases. HslV has a nucleophilic threonine residue at its N-terminus that is exposed after processing of the propeptide and is directly involved in active site catalysis.
Probab=99.97 E-value=2.7e-30 Score=194.44 Aligned_cols=142 Identities=25% Similarity=0.321 Sum_probs=122.1
Q ss_pred ceEEEEEeCCeEEEEEcCccccCceeeecCCCceEEecC-eEEEEecCChHHHHHHHHHHHHHHHHHHHHhCCCCcHHHH
Q psy2074 29 TTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTD-NIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSG 107 (184)
Q Consensus 29 ~t~igi~~~dgVvla~d~r~~~g~~~~~~~~~Ki~~i~~-~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~~~~l 107 (184)
+|+|||+++||||||+|+|.+.|.++.+++.+||++|++ |++|++||..+|++.|.++++.++++|+.+.++ .+
T Consensus 1 tTivgi~~~dgVvlaaD~r~t~G~~v~~~~~~Ki~~i~d~~i~~~~aG~~aD~~~l~~~~~~~~~~y~~~~~~-----~a 75 (171)
T cd01913 1 TTILAVRKNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVIAGFAGSTADAFTLFERFEAKLEQYPGNLLR-----AA 75 (171)
T ss_pred CeEEEEEECCEEEEEECCceEeccEEEcCCcceEEEeCCCCEEEEecccHHHHHHHHHHHHHHHHHhhchHHH-----HH
Confidence 699999999999999999999999999999999999999 999999999999999999999999999987663 55
Q ss_pred HHHHHHHH-HhcCCCcceeeEEEEEeCCCCeEEEEEcCCCceeec--CeEEEecCHHhHHHHHhccCCCC-CCHHHH
Q psy2074 108 AKLFQELV-YSYRDSLTAGIICAGWDRKKGGQVYCIPLGGMLMRQ--KMAMGGSGSTYLYGHMDNQFKEN-MTKKEA 180 (184)
Q Consensus 108 a~~l~~~l-~~~r~p~~~s~llaG~D~~~~~~Ly~idp~G~~~~~--~~~a~G~g~~~~~~~Le~~~~~~-~s~eea 180 (184)
++.+..++ ++++..+.+.++++ |. ++||.+||.|...+. ++.++|||+++++++||..|+++ ||.+|.
T Consensus 76 a~l~~~l~~~~~~~~l~a~~iv~--~~---~~ly~id~~G~~ie~~~~~~a~GSGS~ya~g~ld~~yk~~~ms~~~l 147 (171)
T cd01913 76 VELAKDWRTDRYLRRLEAMLIVA--DK---EHTLLISGNGDVIEPDDGIAAIGSGGNYALAAARALLDHTDLSAEEI 147 (171)
T ss_pred HHHHHHHHhccCcCceEEEEEEe--CC---CcEEEECCCCCEeccCCCeEEEeCCHHHHHHHHHHhhccCCCCHHHH
Confidence 55555553 33333344655655 33 499999999999998 49999999999999999999995 997754
No 46
>KOG0185|consensus
Probab=99.97 E-value=2.5e-30 Score=198.02 Aligned_cols=168 Identities=19% Similarity=0.277 Sum_probs=155.4
Q ss_pred CCccccccccCCceEEEEEeCCeEEEEEcCccccCceeeecCCCceEEecCeEEEEecCChHHHHHHHHHHHHHHHHHH-
Q psy2074 17 APDWLTAKHSCGTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQR- 95 (184)
Q Consensus 17 qveya~~~~~~g~t~igi~~~dgVvla~d~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~- 95 (184)
.+...++++-.||+|||+|++|||++|+|+..++|.+...++.+||++|+||+++++||..+|+|.+.+.|.....+..
T Consensus 30 ~~qrt~~p~vTGTSVla~ky~~GVviaaD~lgSYGslaR~~nVeRi~kVgdntllG~sGdisD~Q~i~r~L~~l~iedn~ 109 (256)
T KOG0185|consen 30 PIQRTLNPIVTGTSVLALKYKDGVVIAADTLGSYGSLARYKNVERIFKVGDNTLLGASGDISDFQYIQRVLEQLVIEDNR 109 (256)
T ss_pred CcccccCceeccceEEEEEecCceEEEecccccchhhhhhcCceeeEEecCceEEecCccHHHHHHHHHHHHHHHhcccc
Confidence 4455677889999999999999999999999999999999999999999999999999999999999999988876654
Q ss_pred HHhCCCCcHHHHHHHHHHHHHhcCC---CcceeeEEEEEeCCCCeEEEEEcCCCceeecCeEEEecCHHhHHHHHhccCC
Q psy2074 96 MELGEEPLVYSGAKLFQELVYSYRD---SLTAGIICAGWDRKKGGQVYCIPLGGMLMRQKMAMGGSGSTYLYGHMDNQFK 172 (184)
Q Consensus 96 ~~~~~~~~~~~la~~l~~~l~~~r~---p~~~s~llaG~D~~~~~~Ly~idp~G~~~~~~~~a~G~g~~~~~~~Le~~~~ 172 (184)
+..++.+.|+.++++|.+++|.+|. |+..+++|||+|..+.|.|-.+|-.|...+.+..|+|.|+..+.++|++.|.
T Consensus 110 ~~Dg~~l~Pk~ih~yltrvlY~rRsKmnPlwntlvVgGv~~~g~~~lg~V~~~G~~Y~~~~vATGfg~hLa~P~lR~~~~ 189 (256)
T KOG0185|consen 110 LDDGQSLGPKAIHSYLTRVLYARRSKMNPLWNTLVVGGVDNTGEPFLGYVDLLGVAYESPVVATGFGAHLALPLLRDEWE 189 (256)
T ss_pred cccccccChHHHHHHHHHHHHHhhhccCchhhheeEeeecCCCCeeEEEEeeccccccCchhhhhhHHHhhhHHHHHhhh
Confidence 4667999999999999999999885 9999999999999889999999999999999999999999999999999996
Q ss_pred ---CCCCHHHHhhcC
Q psy2074 173 ---ENMTKKEAMSTF 184 (184)
Q Consensus 173 ---~~~s~eea~~l~ 184 (184)
++++.|||.+++
T Consensus 190 ~k~~~~s~eeA~~li 204 (256)
T KOG0185|consen 190 KKGEDLSREEAEALI 204 (256)
T ss_pred ccchhhHHHHHHHHH
Confidence 689999998763
No 47
>TIGR03692 ATP_dep_HslV ATP-dependent protease HslVU, peptidase subunit. The ATP-dependent protease HslVU, a complex of hexameric HslU active as a protein-unfolding ATPase and dodecameric HslV, the catalytic threonine protease.
Probab=99.97 E-value=3.4e-29 Score=188.51 Aligned_cols=141 Identities=25% Similarity=0.310 Sum_probs=120.8
Q ss_pred ceEEEEEeCCeEEEEEcCccccCceeeecCCCceEEe-cCeEEEEecCChHHHHHHHHHHHHHHHHHHHHhCCCCcHHHH
Q psy2074 29 TTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRV-TDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSG 107 (184)
Q Consensus 29 ~t~igi~~~dgVvla~d~r~~~g~~~~~~~~~Ki~~i-~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~~~~l 107 (184)
+|+||++++||||||+|+|.+.|.++.+++.+||++| ++|++|++||..+|++.|.++++.++++|++.. .+.+
T Consensus 1 tTivgi~~~dgVvlaaD~r~s~g~~v~~~~~~Ki~~i~~d~i~~~~aG~~aD~q~l~~~~~~~~~~y~~~~-----~~~~ 75 (171)
T TIGR03692 1 TTILAVRRNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEEYQGNL-----TRAA 75 (171)
T ss_pred CeEEEEEECCEEEEEECCceEeceEEEcCCCCeEEEeCCCCEEEEecchHHHHHHHHHHHHHHHHHccCch-----HHHH
Confidence 6999999999999999999999999999999999999 599999999999999999999999999988633 4777
Q ss_pred HHHHHHH-HHhcCCCcceeeEEEEEeCCCCeEEEEEcCCCceeec--CeEEEecCHHhHHHHHhccC-CCCCCHHH
Q psy2074 108 AKLFQEL-VYSYRDSLTAGIICAGWDRKKGGQVYCIPLGGMLMRQ--KMAMGGSGSTYLYGHMDNQF-KENMTKKE 179 (184)
Q Consensus 108 a~~l~~~-l~~~r~p~~~s~llaG~D~~~~~~Ly~idp~G~~~~~--~~~a~G~g~~~~~~~Le~~~-~~~~s~ee 179 (184)
++.++++ .+.+++.+.+.++++++ ++||.+||.|...++ ++.++|||+++++++||..| +++|+.++
T Consensus 76 a~l~~~~~~~~~~~~l~a~~iv~~~-----~~ly~i~~~G~~ie~~~~~~a~GSGS~~a~g~ld~~y~~~~~sa~~ 146 (171)
T TIGR03692 76 VELAKDWRTDRYLRRLEAMLIVADK-----ETSLLISGTGDVIEPEDGIAAIGSGGNYALAAARALLRNTDLSAEE 146 (171)
T ss_pred HHHHHHHhhcccccccEEEEEEEcC-----CCEEEEcCCCcEeccCCCeEEEeCCHHHHHHHHHHhhhcCCCCHHH
Confidence 7777774 23333345566666533 499999999999996 69999999999999999999 58888443
No 48
>COG3484 Predicted proteasome-type protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=1e-12 Score=99.67 Aligned_cols=154 Identities=20% Similarity=0.244 Sum_probs=119.9
Q ss_pred CceEEEEEeCCeEEEEEcCccccCceeeecCCCceEEec----CeEEEEecCChHHHHHHHHHHHHHHHHHHHHhC-CCC
Q psy2074 28 GTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVT----DNIYCCRSGSAADTQAISDFVSYNLDLQRMELG-EEP 102 (184)
Q Consensus 28 g~t~igi~~~dgVvla~d~r~~~g~~~~~~~~~Ki~~i~----~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~-~~~ 102 (184)
+|.|||++...|.|+++|+|.+.|.- ....++|+|... .-++++.+|..+-.|.+++.+.+..+...-..= .-+
T Consensus 1 MTYCv~l~l~~GlVf~sDsRTNAGvD-~istfkKl~~~~~pGdRvlvl~taGNLA~tQaV~~ll~e~~~~d~~~~L~n~~ 79 (255)
T COG3484 1 MTYCVGLILDFGLVFGSDSRTNAGVD-YISTFKKLFVFELPGDRVLVLCTAGNLAITQAVLHLLDERIQRDDGDSLLNIP 79 (255)
T ss_pred CceEEEEEeccceEEecccccccCch-HHHHHHHHhhccCCCceEEEEEecCccHHHHHHHHHHHHHhhccchhhhhcch
Confidence 47899999999999999999998753 334577887664 456788999999999999999877652221111 223
Q ss_pred cHHHHHHHHHHHHHh---cCC--------CcceeeEEEEEeCCCCeEEEEEcCCCceee----cCeEEEecCHHhHHHHH
Q psy2074 103 LVYSGAKLFQELVYS---YRD--------SLTAGIICAGWDRKKGGQVYCIPLGGMLMR----QKMAMGGSGSTYLYGHM 167 (184)
Q Consensus 103 ~~~~la~~l~~~l~~---~r~--------p~~~s~llaG~D~~~~~~Ly~idp~G~~~~----~~~~a~G~g~~~~~~~L 167 (184)
+..+.+.++.....+ +-. -|.||++++|.-..+.|.||.|.|.|++.+ .+|..+|. +++.+++|
T Consensus 80 sm~eattlvgetvrEv~~rds~~leka~~dfn~sfllGGQI~G~pp~Ly~IYpqGNFIqaT~etpf~QiGE-tKYGKPil 158 (255)
T COG3484 80 SMYEATTLVGETVREVQARDSPALEKAGIDFNCSFLLGGQIKGEPPRLYLIYPQGNFIQATPETPFLQIGE-TKYGKPIL 158 (255)
T ss_pred hHHHHHHHHHHHHHHHHhccCchhhccCcceeEEEEEcceecCCCceeEEEccCCCeeecCCCCceeEccc-cccCchhh
Confidence 455556665554433 222 389999999998866799999999999986 79999995 67999999
Q ss_pred hccCCCCCCHHHHhhc
Q psy2074 168 DNQFKENMTKKEAMST 183 (184)
Q Consensus 168 e~~~~~~~s~eea~~l 183 (184)
++.+..++.+|||.++
T Consensus 159 dR~i~~~~pLeea~kc 174 (255)
T COG3484 159 DRTITYDTPLEEAAKC 174 (255)
T ss_pred hhhhhccCCHHHHhhh
Confidence 9999999999999876
No 49
>COG5405 HslV ATP-dependent protease HslVU (ClpYQ), peptidase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=1.5e-12 Score=95.45 Aligned_cols=145 Identities=23% Similarity=0.290 Sum_probs=111.5
Q ss_pred CCceEEEEEeCCeEEEEEcCccccCceeeecCCCceEEecC-eEEEEecCChHHHHHHHHHHHHHHHHHHHHhCCCC-cH
Q psy2074 27 CGTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTD-NIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEP-LV 104 (184)
Q Consensus 27 ~g~t~igi~~~dgVvla~d~r~~~g~~~~~~~~~Ki~~i~~-~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~-~~ 104 (184)
++||+++++.++-|++|.|..+|.|..+...+..|+.+|.+ +++.+++|.++|+..|.+.++.+++.|.- .-. ..
T Consensus 3 h~TTiv~vr~~gkv~iagDGQVtlG~tvmK~narKvRkl~~gkvlaGFAGstADaftLfe~fe~kle~~~g---~L~raa 79 (178)
T COG5405 3 HMTTIVAVRKNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEQYQG---DLFRAA 79 (178)
T ss_pred eeEEEEEEeeCCeEEEecCceEeecceeeeccHHHHHHHcCCcEEEEecccchhHHHHHHHHHHHHHHccC---cHHHHH
Confidence 68999999999999999999999999999999888888865 89999999999999999999999988751 111 12
Q ss_pred HHHHHHHHHHHHhcCCCcceeeEEEEEeCCCCeEEEEEcCCCceee--cCeEEEecCHHhHHHHHhccCC-CCCCHHHHh
Q psy2074 105 YSGAKLFQELVYSYRDSLTAGIICAGWDRKKGGQVYCIPLGGMLMR--QKMAMGGSGSTYLYGHMDNQFK-ENMTKKEAM 181 (184)
Q Consensus 105 ~~la~~l~~~l~~~r~p~~~s~llaG~D~~~~~~Ly~idp~G~~~~--~~~~a~G~g~~~~~~~Le~~~~-~~~s~eea~ 181 (184)
-++++..+.- .+.+.+..-++++ |+ -.++-+...|...+ .+..|||||..++.+.....++ +++|.+|-.
T Consensus 80 velaKdwr~D--k~lr~LEAmllVa--d~---~~il~isG~gdV~epe~~~~aIGSGgnyAl~AarAl~~~~~lsA~eIa 152 (178)
T COG5405 80 VELAKDWRTD--KYLRKLEAMLLVA--DK---THILIITGNGDVIEPEDDIIAIGSGGNYALSAARALMENTELSAREIA 152 (178)
T ss_pred HHHHHhhhhh--hHHHHHhhheeEe--CC---CcEEEEecCcceecCCCCeEEEcCCchHHHHHHHHHHhccCCCHHHHH
Confidence 2333322211 1112355666776 44 46788877887664 5699999999999999998885 589988754
No 50
>PF10584 Proteasome_A_N: Proteasome subunit A N-terminal signature; InterPro: IPR000426 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). This family contains the alpha subunit sequences which range from 210 to 290 amino acids. These sequences are classified as non-peptidase homologues in MEROPS peptidase family T1 (clan PB(T)). ; GO: 0004175 endopeptidase activity, 0006511 ubiquitin-dependent protein catabolic process, 0019773 proteasome core complex, alpha-subunit complex; PDB: 3H4P_M 1IRU_O 3UN4_U 1FNT_A 3OEV_G 3OEU_U 3SDK_U 3DY3_G 3MG7_G 3L5Q_C ....
Probab=98.47 E-value=1.2e-08 Score=51.01 Aligned_cols=21 Identities=5% Similarity=0.066 Sum_probs=18.5
Q ss_pred ccccccccCCCCCCCcccccc
Q psy2074 4 KDYNVNAYHGGVEAPDWLTAK 24 (184)
Q Consensus 4 ~~~~~~~~~G~l~qveya~~~ 24 (184)
.+.++++|+|||+|||||.+|
T Consensus 3 ~~~t~FSp~Grl~QVEYA~~A 23 (23)
T PF10584_consen 3 RSITTFSPDGRLFQVEYAMKA 23 (23)
T ss_dssp SSTTSBBTTSSBHHHHHHHHH
T ss_pred CCceeECCCCeEEeeEeeecC
Confidence 456789999999999999875
No 51
>PF09894 DUF2121: Uncharacterized protein conserved in archaea (DUF2121); InterPro: IPR016754 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. They do show distant similarity to NTPases and to nucleic acid binding enzymes.
Probab=93.99 E-value=1.6 Score=33.53 Aligned_cols=124 Identities=19% Similarity=0.180 Sum_probs=65.9
Q ss_pred CceEEEEEeCCeEEEEEcCccccCceeeecCCCceEEecCeEEEEecCChHHHHHHHHHHHHHHHHHHHHhCCCC-cHHH
Q psy2074 28 GTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEP-LVYS 106 (184)
Q Consensus 28 g~t~igi~~~dgVvla~d~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~-~~~~ 106 (184)
++-+||..+++|.|+|.|+|.- ++-|.....+.|-+.| |...+ +=++
T Consensus 1 MSLII~y~GknGaViaGDkR~I----------------------~F~G~~~~re~LEeeL----------YsG~IktdeE 48 (194)
T PF09894_consen 1 MSLIIAYYGKNGAVIAGDKRNI----------------------AFRGDEEKREKLEEEL----------YSGKIKTDEE 48 (194)
T ss_pred CeEEEEEecCCCcEEeccceee----------------------eecCCHHHHHHHHHHH----------hCCccCCHHH
Confidence 4679999999999999999831 2446655555444433 44444 4456
Q ss_pred HHHHHHHHH-----HhcCC-CcceeeEEEE-------EeCCCCeEEEEE-------cCCCceeec-------CeEEEe--
Q psy2074 107 GAKLFQELV-----YSYRD-SLTAGIICAG-------WDRKKGGQVYCI-------PLGGMLMRQ-------KMAMGG-- 157 (184)
Q Consensus 107 la~~l~~~l-----~~~r~-p~~~s~llaG-------~D~~~~~~Ly~i-------dp~G~~~~~-------~~~a~G-- 157 (184)
|.+....+= ..-|. -+-..-+|+| .|. ..-++|.+ |-.|.-..- .....|
T Consensus 49 L~kkA~Elgv~i~I~D~r~KV~~~~~vlvGEV~s~~g~~s-kRRRiY~t~g~~~Ivei~~~~i~~~~~g~~sgiIVfGNk 127 (194)
T PF09894_consen 49 LLKKAEELGVKIKITDDREKVRKIGDVLVGEVTSISGKDS-KRRRIYATKGKYAIVEIENDEITNKSRGEGSGIIVFGNK 127 (194)
T ss_pred HHHHHHHcCCEEEEecCchheEEeCCEEEEEEEEEcCccc-eeeEEEecCCCEEEEEecCCeEEEEecCCceeEEEECCH
Confidence 666555421 01111 1112223332 232 22344433 333332221 122222
Q ss_pred cCHHhHHHHHhccCCCCCCHHHHhhcC
Q psy2074 158 SGSTYLYGHMDNQFKENMTKKEAMSTF 184 (184)
Q Consensus 158 ~g~~~~~~~Le~~~~~~~s~eea~~l~ 184 (184)
.--+.+...|.+.|++.|+++++..+|
T Consensus 128 ~~K~ia~~~lkk~~~~k~~l~~i~~i~ 154 (194)
T PF09894_consen 128 FTKEIANKELKKYWKPKMSLKDIENIF 154 (194)
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 112566778889999999999987664
No 52
>KOG3361|consensus
Probab=90.58 E-value=0.33 Score=35.02 Aligned_cols=44 Identities=18% Similarity=0.236 Sum_probs=40.4
Q ss_pred EEEcCCCceeecCeEEEecCHHhHHHHHhccCCCCCCHHHHhhc
Q psy2074 140 YCIPLGGMLMRQKMAMGGSGSTYLYGHMDNQFKENMTKKEAMST 183 (184)
Q Consensus 140 y~idp~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~eea~~l 183 (184)
..+|.+|.....+|-..|-|+-.+.+-+-..|-.++|+|||.++
T Consensus 71 Ikvd~~g~I~dakFKTFGCGSAIASSS~aTewvkgkt~dea~kI 114 (157)
T KOG3361|consen 71 IKVDDSGVIEDAKFKTFGCGSAIASSSLATEWVKGKTLDEALKI 114 (157)
T ss_pred EEECCCCcEEEeeeeecccchHhhhhHHHHHHHccccHHHHHhc
Confidence 36688999999999999999999999999999999999999875
No 53
>COG1754 Uncharacterized C-terminal domain of topoisomerase IA [General function prediction only]
Probab=55.07 E-value=8.9 Score=31.42 Aligned_cols=54 Identities=19% Similarity=0.265 Sum_probs=35.6
Q ss_pred EEEEeCCCCeEEEEE-cCCCceeecCeEEEecC-HHhHHHHHhccCC-CCCCHHHHhhcC
Q psy2074 128 CAGWDRKKGGQVYCI-PLGGMLMRQKMAMGGSG-STYLYGHMDNQFK-ENMTKKEAMSTF 184 (184)
Q Consensus 128 laG~D~~~~~~Ly~i-dp~G~~~~~~~~a~G~g-~~~~~~~Le~~~~-~~~s~eea~~l~ 184 (184)
+.|.|+..|-.||.- -..|-|... ..|.. -.-...-|-+.|. .++|+|+|++||
T Consensus 77 ~LG~DP~tG~eI~~k~GryGPYVq~---~lg~~~~kpkraSLpkg~~~e~ItLE~AL~LL 133 (298)
T COG1754 77 VLGIDPETGEEIYLKNGRYGPYVQE---QLGDPKPKPKRASLPKGWKPETITLEKALKLL 133 (298)
T ss_pred ccccCCCCCceeEEeccCCCceeee---ecCCCCCCcccccCCCCCChhhCcHHHHHHHH
Confidence 447887666666644 467776643 45655 4444555666675 589999999985
No 54
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=44.31 E-value=64 Score=21.41 Aligned_cols=41 Identities=7% Similarity=-0.122 Sum_probs=26.3
Q ss_pred CCCCcHHHHHHHHHHHHHhcCCCcceeeEEEEEeCCCCeEEEEEcCCCceeecCeEEEec
Q psy2074 99 GEEPLVYSGAKLFQELVYSYRDSLTAGIICAGWDRKKGGQVYCIPLGGMLMRQKMAMGGS 158 (184)
Q Consensus 99 ~~~~~~~~la~~l~~~l~~~r~p~~~s~llaG~D~~~~~~Ly~idp~G~~~~~~~~a~G~ 158 (184)
..+++.+.|++.+.++..- .++....+.++|..|.. +++.|
T Consensus 17 d~~~s~e~L~~~v~~~c~~--------------~~~q~ft~kw~DEEGDp-----~tiSS 57 (83)
T cd06404 17 DPSISLEELCNEVRDMCRF--------------HNDQPFTLKWIDEEGDP-----CTISS 57 (83)
T ss_pred CCCcCHHHHHHHHHHHhCC--------------CCCCcEEEEEECCCCCc-----eeecC
Confidence 3456677888887775522 23345678889988864 45554
No 55
>PF04539 Sigma70_r3: Sigma-70 region 3; InterPro: IPR007624 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 3 forms a discrete compact three helical domain within the sigma-factor. Region is not normally involved in the recognition of promoter DNA, but in some specific bacterial promoters containing an extended -10 promoter element, residues within region 3 play an important role. Region 3 primarily is involved in binding the core RNA polymerase in the holoenzyme [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 1L0O_C 1KU2_B 1RP3_C 1SC5_A 1TTY_A 2BE5_F 2A6E_F 2CW0_F 2A69_P 2A6H_P ....
Probab=42.50 E-value=57 Score=20.51 Aligned_cols=28 Identities=21% Similarity=0.080 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHhCCCCcHHHHHHHHH
Q psy2074 85 DFVSYNLDLQRMELGEEPLVYSGAKLFQ 112 (184)
Q Consensus 85 ~~l~~~~~~~~~~~~~~~~~~~la~~l~ 112 (184)
+.+++.........|++++.+.+|..+.
T Consensus 4 ~~i~~a~~~L~~~lgr~Pt~eEiA~~lg 31 (78)
T PF04539_consen 4 RKIERARRELEQELGREPTDEEIAEELG 31 (78)
T ss_dssp HHHHHHHHHHHHHHSS--BHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHc
Confidence 4445555566667899999999998654
No 56
>COG4079 Uncharacterized protein conserved in archaea [Function unknown]
Probab=42.14 E-value=21 Score=28.75 Aligned_cols=125 Identities=18% Similarity=0.207 Sum_probs=65.7
Q ss_pred CceEEEEEeCCeEEEEEcCccccCceeeecCCCceEEecCeEEEEecCChHHHHHHHHHHHHHHHHHHHHhCCCCcHHHH
Q psy2074 28 GTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSG 107 (184)
Q Consensus 28 g~t~igi~~~dgVvla~d~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~~~~l 107 (184)
++.+|+..+++|.|+|.|+|.- ++-|.-.|.+.|-+.| -.|.--+-++|
T Consensus 1 MtLviay~gknGaviaGDrR~i----------------------~frgdee~re~lEekL---------YsGeIkteEEL 49 (293)
T COG4079 1 MTLVIAYIGKNGAVIAGDRREI----------------------TFRGDEEDREKLEEKL---------YSGEIKTEEEL 49 (293)
T ss_pred CeEEEEEecCCCcEEeccceEE----------------------EEecChhHHHHHHHHh---------hcCccccHHHH
Confidence 3678999999999999998731 1336666655554433 23444455666
Q ss_pred HHHHHHHHHhc-----C---CCcceeeEEEEEeCCC-----CeEEEEE-------cCCCceee-------cCeEEEec--
Q psy2074 108 AKLFQELVYSY-----R---DSLTAGIICAGWDRKK-----GGQVYCI-------PLGGMLMR-------QKMAMGGS-- 158 (184)
Q Consensus 108 a~~l~~~l~~~-----r---~p~~~s~llaG~D~~~-----~~~Ly~i-------dp~G~~~~-------~~~~a~G~-- 158 (184)
++....+=-+. | +...-+.+++-+.... .-++|.+ +..|+-.. ..+.+.|.
T Consensus 50 ~r~aeel~Vki~vtDdr~KVrk~~d~VvvGEV~s~~~~~vkRRRvYAT~Ga~aIvel~gs~vts~~~g~g~aiIv~Gnk~ 129 (293)
T COG4079 50 ARKAEELGVKITVTDDRNKVRKRNDGVVVGEVSSVERGIVKRRRVYATAGAYAIVELRGSEVTSTSQGKGSAIIVFGNKF 129 (293)
T ss_pred HHHHHHcCCEEEEEcchHhhhcccCcEEEEEeecccccceeeeEEeecCCceEEEEecCCeeEeeecCCCceEEEECcHH
Confidence 66665532111 0 1122233333333210 1123322 22222110 12233331
Q ss_pred CHHhHHHHHhccCCCCCCHHHHhhc
Q psy2074 159 GSTYLYGHMDNQFKENMTKKEAMST 183 (184)
Q Consensus 159 g~~~~~~~Le~~~~~~~s~eea~~l 183 (184)
--+.+..+|...|.+.++++++..+
T Consensus 130 ~Ke~aneflk~~l~~k~~lqd~~da 154 (293)
T COG4079 130 TKEVANEFLKDNLTKKSKLQDAVDA 154 (293)
T ss_pred HHHHHHHHHHhhccCCCCHHHHHHH
Confidence 1244566888999999999988764
No 57
>PF11211 DUF2997: Protein of unknown function (DUF2997); InterPro: IPR021375 This family of proteins has no known function.
Probab=41.29 E-value=36 Score=20.02 Aligned_cols=32 Identities=13% Similarity=0.184 Sum_probs=27.7
Q ss_pred EEEcCCCceeecCeEEEecCHHhHHHHHhccC
Q psy2074 140 YCIPLGGMLMRQKMAMGGSGSTYLYGHMDNQF 171 (184)
Q Consensus 140 y~idp~G~~~~~~~~a~G~g~~~~~~~Le~~~ 171 (184)
|.|+|+|.....--...|+....+...||...
T Consensus 3 ~~I~~dG~V~~~v~G~~G~~C~~~t~~lE~~L 34 (48)
T PF11211_consen 3 FTIYPDGRVEEEVEGFKGSSCLEATAALEEAL 34 (48)
T ss_pred EEECCCcEEEEEEEeccChhHHHHHHHHHHHh
Confidence 67899999999888888999999988888765
No 58
>PF12481 DUF3700: Aluminium induced protein ; InterPro: IPR024286 This entry represents a domain found in plant proteins that is approximately 120 amino acids in length. There are two conserved sequence motifs: YGL and LRDR.
Probab=38.41 E-value=2e+02 Score=22.82 Aligned_cols=51 Identities=14% Similarity=0.315 Sum_probs=36.5
Q ss_pred ceEEEEEeCCeEEEEEcCccccCceeeecCCCceEEecCeEEEEecCChHHHHHHHH
Q psy2074 29 TTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAISD 85 (184)
Q Consensus 29 ~t~igi~~~dgVvla~d~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~ 85 (184)
...+.+..-+..+||.-.... +.-.+|.|..-|.|+|-+.|.....-.|.+
T Consensus 43 p~a~s~~~g~~~~lAys~~~~------~~l~pR~F~~~DdIfCiF~G~L~Nl~~L~q 93 (228)
T PF12481_consen 43 PNAFSMNFGDSAALAYSHSNQ------SSLHPRLFAGVDDIFCIFLGSLENLCSLRQ 93 (228)
T ss_pred CCeEEEEcCCCEEEEEecCCC------CccccccccccCCEEEEEecchhhHHHHHH
Confidence 367788888888888733221 123578999999999999999866665543
No 59
>COG4537 ComGC Competence protein ComGC [Intracellular trafficking and secretion]
Probab=33.24 E-value=86 Score=21.64 Aligned_cols=27 Identities=11% Similarity=0.188 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHhCC-CCcHHHH
Q psy2074 81 QAISDFVSYNLDLQRMELGE-EPLVYSG 107 (184)
Q Consensus 81 ~~l~~~l~~~~~~~~~~~~~-~~~~~~l 107 (184)
..+++.++.+++.|++++++ +++.+.|
T Consensus 50 ~A~vkmV~sQ~~~YeLdh~~~~pSl~~L 77 (107)
T COG4537 50 EAVVKMVESQAEAYELDHNRLPPSLSDL 77 (107)
T ss_pred HHHHHHHHHHHHHHHhccCCCCCCHHHH
Confidence 56778888999999999888 5555444
No 60
>COG5469 Predicted metal-binding protein [Function unknown]
Probab=29.63 E-value=16 Score=26.62 Aligned_cols=57 Identities=11% Similarity=-0.049 Sum_probs=35.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhCCCCc-HHHHHHHHHHHHHhcCCCcceeeEEEEEeC
Q psy2074 77 AADTQAISDFVSYNLDLQRMELGEEPL-VYSGAKLFQELVYSYRDSLTAGIICAGWDR 133 (184)
Q Consensus 77 ~~D~~~l~~~l~~~~~~~~~~~~~~~~-~~~la~~l~~~l~~~r~p~~~s~llaG~D~ 133 (184)
..|.+.|.+.++..++.....++-++. |+.++..=+...-.++.|-.-+-+++.++.
T Consensus 38 p~~G~~Ll~kl~~l~qe~~~~~e~~I~~VeCl~~C~r~c~vA~~~~~k~sYLFgdL~p 95 (143)
T COG5469 38 PSDGSILLDKLQELAQEWEIAHEFEIQTVECLAACNRGCVVAFSGPGKPSYLFGDLTP 95 (143)
T ss_pred CCcHHHHHHHHHHHHhhhhhhccceeeeeHhhhhcCCCeEEEEecCCCceEEEccCCc
Confidence 367889999999999988888777774 566665422222222334444445555544
No 61
>PF01726 LexA_DNA_bind: LexA DNA binding domain; InterPro: IPR006199 This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins in bacteria. The aligned region contains a variant form of the helix-turn-helix DNA binding motif []. This domain usually at the N terminus is found associated with IPR006198 from INTERPRO the auto-proteolytic domain of LexA 3.4.21.88 from EC.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1LEA_A 1JHH_A 3JSP_A 1JHF_A 3JSO_B 1LEB_A 3K2Z_A.
Probab=26.54 E-value=1.4e+02 Score=18.51 Aligned_cols=21 Identities=24% Similarity=0.031 Sum_probs=13.1
Q ss_pred HHHHHHhCCCCcHHHHHHHHH
Q psy2074 92 DLQRMELGEEPLVYSGAKLFQ 112 (184)
Q Consensus 92 ~~~~~~~~~~~~~~~la~~l~ 112 (184)
..|...+|.+|++.++++.+.
T Consensus 16 ~~~~~~~G~~Pt~rEIa~~~g 36 (65)
T PF01726_consen 16 REYIEENGYPPTVREIAEALG 36 (65)
T ss_dssp HHHHHHHSS---HHHHHHHHT
T ss_pred HHHHHHcCCCCCHHHHHHHhC
Confidence 455556899999999988653
No 62
>KOG0083|consensus
Probab=26.32 E-value=81 Score=23.17 Aligned_cols=39 Identities=23% Similarity=0.431 Sum_probs=27.1
Q ss_pred cCCceEEEEEeCCeEEEEEcCccccCceeeecCCCceEEecCe
Q psy2074 26 SCGTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDN 68 (184)
Q Consensus 26 ~~g~t~igi~~~dgVvla~d~r~~~g~~~~~~~~~Ki~~i~~~ 68 (184)
-.|.|++-|++|||..++..-..+-| .+--+|+..+++.
T Consensus 7 ~~gktcllir~kdgafl~~~fistvg----id~rnkli~~~~~ 45 (192)
T KOG0083|consen 7 CTGKTCLLIRFKDGAFLAGNFISTVG----IDFRNKLIDMDDK 45 (192)
T ss_pred ccCceEEEEEeccCceecCceeeeee----eccccceeccCCc
Confidence 46889999999999998864433333 2334677777764
No 63
>PF00220 Hormone_4: Neurohypophysial hormones, N-terminal Domain; InterPro: IPR022423 Oxytocin (or ocytocin) and vasopressin [] are small (nine amino acid residues), structurally and functionally related neurohypophysial peptide hormones. Oxytocin causes contraction of the smooth muscle of the uterus and of the mammary gland while vasopressin has a direct antidiuretic action on the kidney and also causes vasoconstriction of the peripheral vessels. Like the majority of active peptides, both hormones are synthesized as larger protein precursors that are enzymatically converted to their mature forms. Peptides belonging to this family are also found in birds, fish, reptiles and amphibians (mesotocin, isotocin, valitocin, glumitocin, aspargtocin, vasotocin, seritocin, asvatocin, phasvatocin), in worms (annetocin), octopi (cephalotocin), locust (locupressin or neuropeptide F1/F2) and in molluscs (conopressins G and S) []. The pattern developed to detect this category of peptides spans their entire sequence and includes four invariant amino acid residues. .; GO: 0005185 neurohypophyseal hormone activity, 0005576 extracellular region
Probab=26.06 E-value=32 Score=13.03 Aligned_cols=8 Identities=38% Similarity=0.360 Sum_probs=4.8
Q ss_pred ccccccCC
Q psy2074 6 YNVNAYHG 13 (184)
Q Consensus 6 ~~~~~~~G 13 (184)
|-+|||.|
T Consensus 2 ~i~nCP~G 9 (9)
T PF00220_consen 2 YIRNCPIG 9 (9)
T ss_pred ccccCCCC
Confidence 44667665
No 64
>PRK14065 exodeoxyribonuclease VII small subunit; Provisional
Probab=24.92 E-value=73 Score=21.21 Aligned_cols=24 Identities=21% Similarity=0.210 Sum_probs=20.5
Q ss_pred HHhHHHHHhccCCCCCCHHHHhhc
Q psy2074 160 STYLYGHMDNQFKENMTKKEAMST 183 (184)
Q Consensus 160 ~~~~~~~Le~~~~~~~s~eea~~l 183 (184)
-..+..+|+..-.|++|+++.++|
T Consensus 31 lerakeiLe~LndpeisL~eSvkL 54 (86)
T PRK14065 31 VHSLEQAIDRLNDPNLSLKDGMDL 54 (86)
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHH
Confidence 456788999999999999999875
No 65
>PF15643 Tox-PL-2: Papain fold toxin 2
Probab=24.66 E-value=2.4e+02 Score=19.40 Aligned_cols=74 Identities=12% Similarity=0.041 Sum_probs=48.0
Q ss_pred CCcHHHHHHHHHHHHHhcCCCcceeeEEEEEeCCCCeEEEEE--cCCCceee---cCeEEEecCHHhHHHHHhccCCCCC
Q psy2074 101 EPLVYSGAKLFQELVYSYRDSLTAGIICAGWDRKKGGQVYCI--PLGGMLMR---QKMAMGGSGSTYLYGHMDNQFKENM 175 (184)
Q Consensus 101 ~~~~~~la~~l~~~l~~~r~p~~~s~llaG~D~~~~~~Ly~i--dp~G~~~~---~~~~a~G~g~~~~~~~Le~~~~~~~ 175 (184)
.....++|..+.+.|-..+-|.-+--|=.|.. .+|.+|+= .|.++... ....+++ .-+.|+....+|
T Consensus 18 ~~qC~~cA~Al~~~L~~~gI~Gk~i~l~T~~~--~~~~I~sd~~~~~~sIt~NG~H~gI~V~------~~VFDNl~p~G~ 89 (100)
T PF15643_consen 18 IFQCVECASALKQFLKQAGIPGKIIRLYTGYH--EGPFIYSDRLGPQESITTNGRHYGIEVG------EIVFDNLHPEGM 89 (100)
T ss_pred ceehHHHHHHHHHHHHHCCCCceEEEEEecCC--CCceehhhhhcCCcceeeCCEEEEEEEe------eEEecccCcccC
Confidence 55689999999998877766665555555654 35777743 34555554 2333343 345677778899
Q ss_pred CHHHHhh
Q psy2074 176 TKKEAMS 182 (184)
Q Consensus 176 s~eea~~ 182 (184)
+.+|=+.
T Consensus 90 ~r~dWl~ 96 (100)
T PF15643_consen 90 SREDWLR 96 (100)
T ss_pred CHHHHHH
Confidence 9887553
No 66
>PRK11325 scaffold protein; Provisional
Probab=23.04 E-value=1.3e+02 Score=21.38 Aligned_cols=47 Identities=17% Similarity=0.206 Sum_probs=33.2
Q ss_pred eEEE-EEcCCCceeecCeEEEecCHHhHHHHHhccCCCCCCHHHHhhc
Q psy2074 137 GQVY-CIPLGGMLMRQKMAMGGSGSTYLYGHMDNQFKENMTKKEAMST 183 (184)
Q Consensus 137 ~~Ly-~idp~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~eea~~l 183 (184)
-.|| .+|+.|...+..|.+.|-....+-.-+=..+-.+.+++||..+
T Consensus 41 i~l~l~v~~~~~I~d~~f~~~GC~is~Asas~~~e~~~Gktl~ea~~i 88 (127)
T PRK11325 41 MKLQIKVNDEGIIEDAKFKTYGCGSAIASSSLVTEWVKGKTLDEALAI 88 (127)
T ss_pred EEEEEEECCCCeEEEEEEEeeCCHHHHHHHHHHHHHHcCCCHHHHHhc
Confidence 3444 5566788888999999876666655554445568899998875
No 67
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=22.78 E-value=1.2e+02 Score=24.68 Aligned_cols=49 Identities=14% Similarity=0.141 Sum_probs=31.1
Q ss_pred eeeEEEEEeCCCCeEEEEEcCCCceee---cCeEEEecCHHhHHHHHhccCCCCCCHHHH
Q psy2074 124 AGIICAGWDRKKGGQVYCIPLGGMLMR---QKMAMGGSGSTYLYGHMDNQFKENMTKKEA 180 (184)
Q Consensus 124 ~s~llaG~D~~~~~~Ly~idp~G~~~~---~~~~a~G~g~~~~~~~Le~~~~~~~s~eea 180 (184)
+-+=++|.|. ++..+|..|.... -+-||.|.|+ |+..+.+. -++++||.
T Consensus 100 tIiDIGGQD~----K~I~~~~~G~v~~f~MNdkCAAGTG~-FLe~~A~~---L~i~leel 151 (262)
T TIGR02261 100 AVLDIGALHG----RAIRMDERGKVEAYKMTSQCASGSGQ-FLENIARY---LGIAQDEI 151 (262)
T ss_pred EEEEeCCCce----EEEEEcCCCcEeeEEecCcccccccH-HHHHHHHH---hCCCHHHH
Confidence 3344677775 6788898898764 5778889887 44333332 25555553
No 68
>PF13066 DUF3929: Protein of unknown function (DUF3929)
Probab=22.77 E-value=1.2e+02 Score=18.43 Aligned_cols=22 Identities=18% Similarity=0.143 Sum_probs=16.9
Q ss_pred cccccCCceEEEEEeCCeEEEE
Q psy2074 22 TAKHSCGTTIIAVEFDGGVVIG 43 (184)
Q Consensus 22 ~~~~~~g~t~igi~~~dgVvla 43 (184)
..|+.+-+|+|.|++.|-|-+-
T Consensus 39 vtaidkqgtiisiac~divkve 60 (65)
T PF13066_consen 39 VTAIDKQGTIISIACNDIVKVE 60 (65)
T ss_pred eEEeccCCcEEEEEecceeeEE
Confidence 3467888899999999877544
No 69
>PF01242 PTPS: 6-pyruvoyl tetrahydropterin synthase; InterPro: IPR007115 The complex organic chemistry involved in the transformation of GTP to tetrahydrobiopterin is catalysed by only three enzymes: GTP cyclohydrolase I, 6-pyruvoyltetrahydropterin synthase and sepiapterin reductase. Tetrahydrobiopterin is the cofactor for several aromatic amino acid monooxygenases and the nitric oxide synthases. 6-Pyruvoyl tetrahydropterin synthase (PTPS) [] is a Zn-dependent metalloprotein, transforms dihydroneopterin triphosphate into 6-pyruvoyltetrahydropterin in the presence of Mg(II) and for which the crystal structure is known. The enzyme is a homohexameric, composed of a dimer of trimers. A transition metal binding site formed by the three histidine residues 23, 48 and 50 is present in each subunit, and bound Zn(II) is responsible for the enzymatic activity. Site-directed mutagenesis of each of these three histidine residues results in a complete loss of metal binding and enzymatic activity [, ]. The function of the bacterial branch of the sequence lineage appears not to have been established.; GO: 0003874 6-pyruvoyltetrahydropterin synthase activity, 0046872 metal ion binding, 0006729 tetrahydrobiopterin biosynthetic process; PDB: 3QNA_E 3QN9_A 3QN0_B 1Y13_C 3D7J_A 3I2B_J 2OBA_D 3M0N_A 2A0S_A 3LZE_A ....
Probab=22.68 E-value=1.2e+02 Score=21.05 Aligned_cols=46 Identities=13% Similarity=0.018 Sum_probs=29.0
Q ss_pred cCChHHHHHHHHHHHHHHHHHHHHhC---------C-CCcHHHHHHHHHHHHHhcC
Q psy2074 74 SGSAADTQAISDFVSYNLDLQRMELG---------E-EPLVYSGAKLFQELVYSYR 119 (184)
Q Consensus 74 sG~~~D~~~l~~~l~~~~~~~~~~~~---------~-~~~~~~la~~l~~~l~~~r 119 (184)
.|..-|+..+.+.++..+..+...+= . .+|++.+|.++.+.+....
T Consensus 43 ~g~v~DF~~lk~~~~~i~~~lDh~~Ln~~~~~~~~~~~pT~E~lA~~i~~~l~~~l 98 (123)
T PF01242_consen 43 DGMVVDFGDLKKIIKEIDDQLDHKFLNEDDPEFDDINNPTAENLARWIFERLKEKL 98 (123)
T ss_dssp TSSSS-HHHHHHHHHHHHHHHTTEEGGHHSGCGCSSTS--HHHHHHHHHHHHHHHH
T ss_pred CCEEEEHHHHHHHHHHHHHHhCcccccCCChhhhccCCCCHHHHHHHHHHHHHHHh
Confidence 57777888888888875543322111 1 2789999999998886654
No 70
>PF09862 DUF2089: Protein of unknown function (DUF2089); InterPro: IPR018658 This family consists of various hypothetical prokaryotic proteins.
Probab=22.56 E-value=58 Score=22.95 Aligned_cols=24 Identities=17% Similarity=0.141 Sum_probs=19.1
Q ss_pred HhHHHHHhccCCCCCCHHHHhhcC
Q psy2074 161 TYLYGHMDNQFKENMTKKEAMSTF 184 (184)
Q Consensus 161 ~~~~~~Le~~~~~~~s~eea~~l~ 184 (184)
.....+|++.-+..+|.|||+++|
T Consensus 89 ~~~~~IL~~L~~GeIs~eeA~~~L 112 (113)
T PF09862_consen 89 DERKEILDKLEKGEISVEEALEIL 112 (113)
T ss_pred hhHHHHHHHHHcCCCCHHHHHHHh
Confidence 455667777777899999999875
No 71
>PF14593 PH_3: PH domain; PDB: 1W1H_D 1W1D_A 1W1G_A 2VKI_A.
Probab=22.50 E-value=80 Score=21.80 Aligned_cols=16 Identities=13% Similarity=0.478 Sum_probs=13.3
Q ss_pred CCeEEEEEcCCCceee
Q psy2074 135 KGGQVYCIPLGGMLMR 150 (184)
Q Consensus 135 ~~~~Ly~idp~G~~~~ 150 (184)
++|+||++||.+....
T Consensus 36 d~PrL~Yvdp~~~~~K 51 (104)
T PF14593_consen 36 DGPRLFYVDPKKMVLK 51 (104)
T ss_dssp TTTEEEEEETTTTEEE
T ss_pred cCCEEEEEECCCCeEC
Confidence 5699999999987654
No 72
>PF08383 Maf_N: Maf N-terminal region; InterPro: IPR013592 This region is found in various leucine zipper transcription factors of the Maf family. These are implicated in the regulation of insulin gene expression [], in erythroid differentiation [], and in differentiation of the neuroretina [].
Probab=22.39 E-value=44 Score=18.31 Aligned_cols=11 Identities=18% Similarity=0.480 Sum_probs=8.6
Q ss_pred CCCHHHHhhcC
Q psy2074 174 NMTKKEAMSTF 184 (184)
Q Consensus 174 ~~s~eea~~l~ 184 (184)
++|.|+|++.+
T Consensus 22 ~LtpEDAvEaL 32 (35)
T PF08383_consen 22 GLTPEDAVEAL 32 (35)
T ss_pred CCCHHHHHHHH
Confidence 68889998753
No 73
>PF05113 DUF693: Protein of unknown function (DUF693); InterPro: IPR007800 This family consists of uncharacterised proteins from Borrelia burgdorferi.
Probab=22.18 E-value=2.3e+02 Score=23.39 Aligned_cols=57 Identities=19% Similarity=0.184 Sum_probs=38.2
Q ss_pred eeeEEEEEeCCCCeEEEEEcCCCceeecCeEEEecCHHhHHHHH---hccCCCCCCHHHHhhc
Q psy2074 124 AGIICAGWDRKKGGQVYCIPLGGMLMRQKMAMGGSGSTYLYGHM---DNQFKENMTKKEAMST 183 (184)
Q Consensus 124 ~s~llaG~D~~~~~~Ly~idp~G~~~~~~~~a~G~g~~~~~~~L---e~~~~~~~s~eea~~l 183 (184)
-.++.+|+= |+-+-...|+|.++-.--.-.=+.+.+...-| +..--.+||.+||++.
T Consensus 97 y~FImaGyL---g~Pmstdyp~gDFsvelev~LlsksnFfnRkl~~~e~k~fKg~TV~daI~s 156 (314)
T PF05113_consen 97 YDFIMAGYL---GAPMSTDYPGGDFSVELEVYLLSKSNFFNRKLDGKEYKNFKGMTVQDAIKS 156 (314)
T ss_pred ccEEeeccc---CCCceeccCCCceEEEEEEEEeecchhHhhhhccccccccCCcCHHHHHHH
Confidence 356888873 33334445899988644444555777888888 4444469999999974
No 74
>PHA02762 hypothetical protein; Provisional
Probab=21.81 E-value=1.8e+02 Score=17.57 Aligned_cols=24 Identities=13% Similarity=0.007 Sum_probs=17.6
Q ss_pred cceeeEEEEEeCCCCeEEEEEcCC
Q psy2074 122 LTAGIICAGWDRKKGGQVYCIPLG 145 (184)
Q Consensus 122 ~~~s~llaG~D~~~~~~Ly~idp~ 145 (184)
-|..++-.|+|+++...-.+++|.
T Consensus 25 eg~afvtigide~g~iayisiep~ 48 (62)
T PHA02762 25 EGEAFVTIGIDENDKISYISIEPL 48 (62)
T ss_pred cccEEEEEeECCCCcEEEEEeccc
Confidence 467788899999666665677774
No 75
>COG0822 IscU NifU homolog involved in Fe-S cluster formation [Energy production and conversion]
Probab=21.45 E-value=1.2e+02 Score=22.38 Aligned_cols=46 Identities=17% Similarity=0.189 Sum_probs=35.7
Q ss_pred eEEE-EEcCCCceeecCeEEEecCHHhHHHHHhccCCCCCCHHHHhhc
Q psy2074 137 GQVY-CIPLGGMLMRQKMAMGGSGSTYLYGHMDNQFKENMTKKEAMST 183 (184)
Q Consensus 137 ~~Ly-~idp~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~eea~~l 183 (184)
..|| .+| .|......|-..|-+...+-+-+=..+=.+.|.+||+++
T Consensus 43 i~l~lkv~-~~~I~d~~F~~~GC~is~ASss~~te~v~Gkti~EAl~i 89 (150)
T COG0822 43 ITLYLKVD-NGVIEDAKFKGFGCAISIASSSMMTELVKGKTLDEALKI 89 (150)
T ss_pred EEEEEEEc-CCEEEEEEeeecCcHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 4555 446 888888999999987777777666666679999999876
No 76
>PF14688 DUF4461: Domain of unknown function (DUF4461)
Probab=21.07 E-value=2.2e+02 Score=23.74 Aligned_cols=49 Identities=6% Similarity=-0.023 Sum_probs=32.2
Q ss_pred HHhCCCCcHHHHHHHHHHHHHhcC--CC--cceeeEEEEEeCCCCeEEEEEcCCCcee-ecC
Q psy2074 96 MELGEEPLVYSGAKLFQELVYSYR--DS--LTAGIICAGWDRKKGGQVYCIPLGGMLM-RQK 152 (184)
Q Consensus 96 ~~~~~~~~~~~la~~l~~~l~~~r--~p--~~~s~llaG~D~~~~~~Ly~idp~G~~~-~~~ 152 (184)
+.....++++.+.....+++.... .| -|.++.|..+ |++-++|... +|+
T Consensus 258 L~kd~sit~~~mi~cc~rLl~~~~~~~~~l~g~~l~Is~~--------ysv~~DG~icIPwd 311 (313)
T PF14688_consen 258 LTKDPSITPDQMISCCRRLLEQSEELLPYLQGLSLCISHY--------YSVLQDGDICIPWD 311 (313)
T ss_pred cccCCCCCHHHHHHHHHHHHhcccccccccCCCEEEEcCc--------cccCCCCcEEecCC
Confidence 334567888999888888886542 34 5666666422 6788888743 444
No 77
>KOG1930|consensus
Probab=20.35 E-value=33 Score=29.78 Aligned_cols=23 Identities=13% Similarity=0.400 Sum_probs=17.0
Q ss_pred hHHHHHhccCCCCCCHHHHhhcC
Q psy2074 162 YLYGHMDNQFKENMTKKEAMSTF 184 (184)
Q Consensus 162 ~~~~~Le~~~~~~~s~eea~~l~ 184 (184)
|++..-+-.|+|++|.|+||.||
T Consensus 206 FV~DTSKyWYKP~isREQAIalL 228 (483)
T KOG1930|consen 206 FVKDTSKYWYKPNISREQAIALL 228 (483)
T ss_pred eeecccccccCCCCCHHHHHHHh
Confidence 44444445568999999999986
Done!