Query psy2074
Match_columns 184
No_of_seqs 130 out of 1038
Neff 8.4
Searched_HMMs 29240
Date Fri Aug 16 23:40:10 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2074.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2074hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1yar_A Proteasome alpha subuni 100.0 2.8E-51 9.7E-56 324.0 18.9 176 6-183 12-192 (233)
2 1ryp_A 20S proteasome; multica 100.0 1.6E-51 5.5E-56 327.3 15.7 180 3-183 4-196 (243)
3 1ryp_E 20S proteasome; multica 100.0 2.7E-51 9.2E-56 325.8 16.4 178 5-183 3-191 (242)
4 1ryp_C 20S proteasome; multica 100.0 8.8E-51 3E-55 323.2 19.2 181 3-183 6-191 (244)
5 1iru_E 20S proteasome; cell cy 100.0 3.8E-51 1.3E-55 324.8 17.0 177 5-183 11-197 (241)
6 1ryp_D 20S proteasome; multica 100.0 7.8E-51 2.7E-55 323.0 18.7 181 3-183 3-192 (241)
7 1iru_G 20S proteasome; cell cy 100.0 7.1E-51 2.4E-55 325.6 17.2 180 3-183 8-192 (254)
8 1iru_B 20S proteasome; cell cy 100.0 1.3E-50 4.6E-55 320.2 18.3 178 4-183 7-189 (233)
9 1iru_D 20S proteasome; cell cy 100.0 1.1E-50 3.8E-55 323.4 17.8 181 2-183 3-190 (248)
10 1iru_C 20S proteasome; cell cy 100.0 1.4E-50 4.8E-55 325.0 18.3 181 3-183 6-192 (261)
11 3h4p_A Proteasome subunit alph 100.0 3.8E-51 1.3E-55 328.6 12.7 178 4-183 14-196 (264)
12 1j2p_A Alpha-ring, proteasome 100.0 9.6E-50 3.3E-54 317.6 18.9 176 5-183 11-191 (246)
13 3nzj_F Proteasome component C1 100.0 4.7E-50 1.6E-54 325.4 17.0 179 3-183 9-195 (288)
14 1ryp_G 20S proteasome; multica 100.0 7.7E-50 2.6E-54 317.9 17.7 179 3-183 5-191 (244)
15 1iru_F 20S proteasome; cell cy 100.0 3.7E-50 1.3E-54 322.9 15.9 179 1-183 1-190 (263)
16 1iru_A 20S proteasome; cell cy 100.0 8.4E-50 2.9E-54 318.0 16.8 179 4-183 11-197 (246)
17 1ryp_B 20S proteasome; multica 100.0 1.8E-49 6.3E-54 316.7 17.9 180 3-183 6-191 (250)
18 1ryp_F 20S proteasome; multica 100.0 1.1E-49 3.8E-54 315.0 16.1 175 5-183 8-191 (233)
19 1ryp_H 20S proteasome; multica 100.0 1.8E-43 6.3E-48 274.3 20.8 163 20-183 1-163 (205)
20 3nzj_H Proteasome component PU 100.0 4.2E-43 1.4E-47 281.2 20.8 162 21-183 22-183 (261)
21 1yar_H Proteasome beta subunit 100.0 7.3E-43 2.5E-47 273.2 21.0 159 23-183 3-162 (217)
22 3nzj_K Proteasome component PR 100.0 9.6E-43 3.3E-47 282.3 21.0 165 19-183 66-231 (287)
23 1iru_M 20S proteasome; cell cy 100.0 2.2E-42 7.4E-47 269.6 22.0 159 25-183 6-174 (213)
24 3h4p_a Proteasome subunit beta 100.0 1.2E-42 4.1E-47 272.4 20.4 156 28-183 1-158 (219)
25 1q5q_A Proteasome alpha-type s 100.0 1.1E-43 3.8E-48 284.6 14.0 167 9-183 7-183 (259)
26 1ryp_N 20S proteasome; multica 100.0 5.9E-43 2E-47 276.4 17.3 162 22-183 2-176 (233)
27 1iru_H 20S proteasome; cell cy 100.0 2.6E-42 8.8E-47 267.7 20.3 155 29-183 1-155 (205)
28 1ryp_M 20S proteasome; multica 100.0 4.4E-42 1.5E-46 269.6 21.4 160 24-183 5-183 (222)
29 1iru_N 20S proteasome; cell cy 100.0 8.7E-43 3E-47 273.0 16.1 161 22-183 2-168 (219)
30 1j2q_H Proteasome beta subunit 100.0 7.4E-42 2.5E-46 264.6 20.9 154 29-183 1-156 (202)
31 1ryp_L 20S proteasome; multica 100.0 7.7E-42 2.6E-46 266.4 20.9 155 29-183 1-156 (212)
32 1ryp_K 20S proteasome; multica 100.0 3.1E-42 1.1E-46 265.9 18.4 156 28-183 1-160 (198)
33 3mi0_A Proteasome subunit alph 100.0 1.6E-42 5.5E-47 276.0 17.2 159 17-183 16-183 (248)
34 3unf_H Proteasome subunit beta 100.0 8.1E-42 2.8E-46 270.0 21.0 154 29-183 1-154 (234)
35 1iru_J 20S proteasome; cell cy 100.0 1.1E-41 3.7E-46 264.2 21.1 159 25-183 5-166 (205)
36 1iru_L 20S proteasome; cell cy 100.0 1.5E-41 5.2E-46 263.2 21.2 154 29-183 1-155 (204)
37 1g0u_M Proteasome component PR 100.0 3.4E-42 1.2E-46 276.9 17.0 166 18-183 31-209 (266)
38 1ryp_J 20S proteasome; multica 100.0 3.4E-41 1.2E-45 261.3 21.5 158 25-183 5-165 (204)
39 1q5r_H Proteasome beta-type su 100.0 1.6E-41 5.6E-46 276.0 20.4 163 21-183 58-231 (294)
40 1ryp_I 20S proteasome; multica 100.0 2.7E-41 9.2E-46 265.2 20.8 154 29-183 1-154 (222)
41 2jay_A Proteasome; hydrolase; 100.0 1.2E-41 4.2E-46 276.5 18.4 165 18-183 48-223 (291)
42 1iru_K 20S proteasome; cell cy 100.0 4.6E-41 1.6E-45 260.0 19.7 156 28-183 1-159 (201)
43 1iru_I 20S proteasome; cell cy 100.0 1E-40 3.5E-45 263.8 21.6 154 29-183 1-154 (234)
44 1q5q_H Proteasome beta-type su 100.0 4.4E-40 1.5E-44 260.3 20.8 155 29-183 1-166 (235)
45 3unf_N Proteasome subunit beta 100.0 3E-40 1E-44 255.0 18.6 153 29-183 1-154 (199)
46 2z3b_A ATP-dependent protease 100.0 1.2E-33 4E-38 215.1 16.1 146 26-182 3-157 (180)
47 1m4y_A ATP-dependent protease 100.0 1.4E-33 5E-38 212.8 16.1 142 29-181 1-148 (171)
48 1g3k_A ATP-dependent protease 100.0 2.1E-33 7.1E-38 212.6 16.5 143 29-182 1-150 (174)
49 3lvl_A NIFU-like protein; prot 25.8 59 0.002 22.2 3.2 47 137-183 42-89 (129)
50 3kol_A Oxidoreductase, glyoxal 25.3 1.3E+02 0.0046 19.5 5.1 17 135-151 132-148 (156)
51 4eo3_A Bacterioferritin comigr 21.0 12 0.00042 29.8 -1.3 46 137-182 103-149 (322)
No 1
>1yar_A Proteasome alpha subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_A 1pma_A 3c91_A 3c92_A 3ipm_A 2ku1_A 2ku2_A 1yau_A 3jrm_A 3jse_A 3jtl_A
Probab=100.00 E-value=2.8e-51 Score=324.04 Aligned_cols=176 Identities=20% Similarity=0.336 Sum_probs=168.6
Q ss_pred ccccccCCCCCCCccccccccCCceEEEEEeCCeEEEEEcCccccCceeeecCCCceEEecCeEEEEecCChHHHHHHHH
Q psy2074 6 YNVNAYHGGVEAPDWLTAKHSCGTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAISD 85 (184)
Q Consensus 6 ~~~~~~~G~l~qveya~~~~~~g~t~igi~~~dgVvla~d~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~ 85 (184)
.++++|+|||+|||||.+++++|+|+|||+++||||||+|+|.+++ ++.+++.+||++|++|+++++||..+|++.+.+
T Consensus 12 ~t~fsp~Grl~QvEya~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~-~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~ 90 (233)
T 1yar_A 12 ITVFSPDGRLFQVEYAREAVKKGSTALGMKFANGVLLISDKKVRSR-LIEQNSIEKIQLIDDYVAAVTSGLVADARVLVD 90 (233)
T ss_dssp -CCCCTTSCCHHHHHHHHHHTTSCCEEEEEETTEEEEEECCCCCCT-TBCSTTCCSEEEEETTEEEEEEEBHHHHHHHHH
T ss_pred CceECcCCeeHHHHhHHHHHhcCCcEEEEEECCEEEEEEeccCCcc-cccccccCeEEEecCCEEEEEeeCHHHHHHHHH
Confidence 3589999999999999999999999999999999999999999996 667889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHhcC-----CCcceeeEEEEEeCCCCeEEEEEcCCCceeecCeEEEecCH
Q psy2074 86 FVSYNLDLQRMELGEEPLVYSGAKLFQELVYSYR-----DSLTAGIICAGWDRKKGGQVYCIPLGGMLMRQKMAMGGSGS 160 (184)
Q Consensus 86 ~l~~~~~~~~~~~~~~~~~~~la~~l~~~l~~~r-----~p~~~s~llaG~D~~~~~~Ly~idp~G~~~~~~~~a~G~g~ 160 (184)
+++.+++.|+++++++++++.+++.+++++|.++ +|+++++||||||+ ++|+||.+||+|++.++++.|+|+|+
T Consensus 91 ~~~~~~~~~~~~~~~~~~v~~~a~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~-~gp~Ly~id~~G~~~~~~~~aiG~gs 169 (233)
T 1yar_A 91 FARISAQQEKVTYGSLVNIENLVKRVADQMQQYTQYGGVRPYGVSLIFAGIDQ-IGPRLFDCDPAGTINEYKATAIGSGK 169 (233)
T ss_dssp HHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTBTTBCCCCEEEEEEEECS-SCEEEEEECTTCCEEEBSEEEESTTH
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCcCCcCcceEEEEEEEEeC-CCCEEEEECCCCCEEeeeEEEEcCCc
Confidence 9999999999999999999999999999998765 49999999999998 79999999999999999999999999
Q ss_pred HhHHHHHhccCCCCCCHHHHhhc
Q psy2074 161 TYLYGHMDNQFKENMTKKEAMST 183 (184)
Q Consensus 161 ~~~~~~Le~~~~~~~s~eea~~l 183 (184)
++++++||+.|+++||+|||+++
T Consensus 170 ~~a~~~Le~~~~~~~s~eea~~l 192 (233)
T 1yar_A 170 DAVVSFLEREYKENLPEKEAVTL 192 (233)
T ss_dssp HHHHHHHHHHCCTTCCHHHHHHH
T ss_pred HHHHHHHHHHhccCCCHHHHHHH
Confidence 99999999999999999999986
No 2
>1ryp_A 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_G* 1g65_G 1vsy_A 2f16_G* 2fak_G* 2fny_G* 2gpl_G* 3d29_G* 3dy3_G* 3dy4_G* 3e47_G* 3gpj_G* 3gpt_G* 3gpw_G* 3hye_G* 3l5q_A 3mg0_G* 3mg4_G* 3oeu_G* 3oev_G* ...
Probab=100.00 E-value=1.6e-51 Score=327.32 Aligned_cols=180 Identities=13% Similarity=0.144 Sum_probs=170.9
Q ss_pred cccccccccCCCCCCCccccccccC-CceEEEEEeCCeEEEEEcCccccCceeeecCCCceEEecCeEEEEecCChHHHH
Q psy2074 3 NKDYNVNAYHGGVEAPDWLTAKHSC-GTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQ 81 (184)
Q Consensus 3 ~~~~~~~~~~G~l~qveya~~~~~~-g~t~igi~~~dgVvla~d~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~ 81 (184)
..+.++++|+|||+|||||.+|+++ |+|+|||+++||||||+|+|.+ +.++.+++.+||++|++|++|++||+.+|++
T Consensus 4 d~~~t~fsp~Grl~QvEYA~~av~~~Gtt~vgi~~~dgVvlaad~r~~-~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~ 82 (243)
T 1ryp_A 4 DRHITIFSPEGRLYQVEYAFKATNQTNINSLAVRGKDCTVVISQKKVP-DKLLDPTTVSYIFCISRTIGMVVNGPIPDAR 82 (243)
T ss_dssp GGTSSSCCTTSCCHHHHHHHHHTTTTCCCEEEEECSSEEEEEEECCCC-CTTBCGGGCCSEEECSSSCEEEEESCHHHHH
T ss_pred CCCCceECCCCeeHHHHHHHHHHhcCCCcEEEEEeCCEEEEEEEecCC-ccccCCCcCCceEEECCCEEEEEEecHHHHH
Confidence 3466789999999999999999999 9999999999999999999999 6777888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHH--HhcC---CCcceeeEEEEEeCCCCeEEEEEcCCCceeecCeEEE
Q psy2074 82 AISDFVSYNLDLQRMELGEEPLVYSGAKLFQELV--YSYR---DSLTAGIICAGWDRKKGGQVYCIPLGGMLMRQKMAMG 156 (184)
Q Consensus 82 ~l~~~l~~~~~~~~~~~~~~~~~~~la~~l~~~l--~~~r---~p~~~s~llaG~D~~~~~~Ly~idp~G~~~~~~~~a~ 156 (184)
.+++.++.+++.|++.++++|+++.+++++++++ |..+ +||++++||||||++++|+||.+||+|++.++++.|+
T Consensus 83 ~l~~~~r~~~~~~~~~~~~~~~v~~la~~l~~~l~~y~~~~~~rP~~v~~lvaG~D~~~gp~Ly~~dp~G~~~~~~~~a~ 162 (243)
T 1ryp_A 83 NAALRAKAEAAEFRYKYGYDMPCDVLAKRMANLSQIYTQRAYMRPLGVILTFVSVDEELGPSIYKTDPAGYYVGYKATAT 162 (243)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBTTSCCCSCEEEEEEEETTTEEEEEEECTTSCEEEBSEEEE
T ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhccCCccccceEEEEEEEcCCCCcEEEEEcCCCCEEEEEEEEE
Confidence 9999999999999999999999999999999999 4433 5999999999999768999999999999999999999
Q ss_pred ecCHHhHHHHHhccCCC-------CCCHHHHhhc
Q psy2074 157 GSGSTYLYGHMDNQFKE-------NMTKKEAMST 183 (184)
Q Consensus 157 G~g~~~~~~~Le~~~~~-------~~s~eea~~l 183 (184)
|++++.++++||+.|++ +||+|||+++
T Consensus 163 G~gs~~a~~~Le~~~~~~~~~~~~~ms~eea~~l 196 (243)
T 1ryp_A 163 GPKQQEITTNLENHFKKSKIDHINEESWEKVVEF 196 (243)
T ss_dssp STTHHHHHHHHHHHHHHHCSSSCCCSSHHHHHHH
T ss_pred CCCcHHHHHHHHHHhhhcccccccCCCHHHHHHH
Confidence 99999999999999998 9999999986
No 3
>1ryp_E 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_D* 1g65_D 2f16_D* 2fak_D* 2fny_D* 2gpl_D* 3d29_D* 3dy3_D* 3dy4_D* 3e47_D* 3gpj_D* 3gpt_D* 3gpw_D* 3hye_D* 3mg0_D* 3mg4_D* 3okj_D* 3shj_D* 3tdd_D* 2z5c_C ...
Probab=100.00 E-value=2.7e-51 Score=325.83 Aligned_cols=178 Identities=20% Similarity=0.277 Sum_probs=170.7
Q ss_pred cccccccCCCCCCCccccccccCCceEEEEEeCCeEEEEEcCccccCceeeecCCCceEEecCeEEEEecCChHHHHHHH
Q psy2074 5 DYNVNAYHGGVEAPDWLTAKHSCGTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAIS 84 (184)
Q Consensus 5 ~~~~~~~~G~l~qveya~~~~~~g~t~igi~~~dgVvla~d~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~ 84 (184)
+.++++|+|||+|||||.+++++|+|+|||+++||||||+|+|.++|.++ +++.+||++|++|++|++||+.+|++.++
T Consensus 3 ~~t~fsp~Grl~QvEyA~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~-~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~ 81 (242)
T 1ryp_E 3 GVSTFSPEGRLFQVEYSLEAIKLGSTAIGIATKEGVVLGVEKRATSPLLE-SDSIEKIVEIDRHIGCAMSGLTADARSMI 81 (242)
T ss_dssp CTTCBCTTSCBHHHHHHHHHHTTSCCEEEEECSSCEEEEEECCCSSTTBC-GGGCCCEEEEETTEEEEEEESGGGHHHHH
T ss_pred CCceECCCCcChHHHhHHHHHHcCCCEEEEEECCEEEEEEeecCCCcCcc-CccCCceEEEcCCEEEEEeecHHHHHHHH
Confidence 56889999999999999999999999999999999999999999998776 88899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHhc-----------CCCcceeeEEEEEeCCCCeEEEEEcCCCceeecCe
Q psy2074 85 DFVSYNLDLQRMELGEEPLVYSGAKLFQELVYSY-----------RDSLTAGIICAGWDRKKGGQVYCIPLGGMLMRQKM 153 (184)
Q Consensus 85 ~~l~~~~~~~~~~~~~~~~~~~la~~l~~~l~~~-----------r~p~~~s~llaG~D~~~~~~Ly~idp~G~~~~~~~ 153 (184)
++++.+++.|++.++++++++.+++.+++++|.+ .+||++++||||||++++|+||.+||+|++.++++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~~~~l~~RP~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~ 161 (242)
T 1ryp_E 82 EHARTAAVTHNLYYDEDINVESLTQSVCDLALRFGEGASGEERLMSRPFGVALLIAGHDADDGYQLFHAEPSGTFYRYNA 161 (242)
T ss_dssp HHHHHHHHHHHHHHSSCCCHHHHHHHHHTTTTCCBSSCTTSCCCBSSCCSEEEEEEEEETTTEEEEEEECTTSCEEEBSE
T ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhccccCcccccccCcceEEEEEEEEeCCCCCEEEEECCCCCEeccCE
Confidence 9999999999999999999999999999998874 55999999999999658999999999999999999
Q ss_pred EEEecCHHhHHHHHhccCCCCCCHHHHhhc
Q psy2074 154 AMGGSGSTYLYGHMDNQFKENMTKKEAMST 183 (184)
Q Consensus 154 ~a~G~g~~~~~~~Le~~~~~~~s~eea~~l 183 (184)
.|+|+|+++++++||+.|+++||+|||+++
T Consensus 162 ~aiGsgs~~a~~~Le~~~~~~ms~eea~~l 191 (242)
T 1ryp_E 162 KAIGSGSEGAQAELLNEWHSSLTLKEAELL 191 (242)
T ss_dssp EEESTTHHHHHHHHHHHCCTTCCHHHHHHH
T ss_pred EEECCCCHHHHHHHHHhhccCCCHHHHHHH
Confidence 999999999999999999999999999886
No 4
>1ryp_C 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_B* 1g65_B 2f16_B* 2fak_B* 2fny_B* 2gpl_B* 3d29_B* 3dy3_B* 3dy4_B* 3e47_B* 3gpj_B* 3gpt_B* 3gpw_B* 3hye_B* 3mg0_B* 3mg4_B* 3okj_B* 3shj_B* 3tdd_B* 3nzj_B* ...
Probab=100.00 E-value=8.8e-51 Score=323.22 Aligned_cols=181 Identities=17% Similarity=0.233 Sum_probs=171.9
Q ss_pred cccccccccCCCCCCCccccccccCCceEEEEEeCCeEEEEEcCccccCceeeecCCCceEEecCeEEEEecCChHHHHH
Q psy2074 3 NKDYNVNAYHGGVEAPDWLTAKHSCGTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQA 82 (184)
Q Consensus 3 ~~~~~~~~~~G~l~qveya~~~~~~g~t~igi~~~dgVvla~d~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~ 82 (184)
..+.++++|+|||+|||||.+++++|+|+|||+++||||||+|+|.++|.++.+++.+||++|++|++|++||+.+|++.
T Consensus 6 d~~~t~fsp~Grl~QvEyA~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~ 85 (244)
T 1ryp_C 6 DSRTTIFSPEGRLYQVEYALESISHAGTAIGIMASDGIVLAAERKVTSTLLEQDTSTEKLYKLNDKIAVAVAGLTADAEI 85 (244)
T ss_dssp CCCTTCBCTTSCBHHHHHHHHHHTTSCCEEEEEETTEEEEEEECSSCCSSBCSTTCCSSEEESSSSEEEEEEECHHHHHH
T ss_pred CCCCceECcCCeeHHHHhHHHHHhcCCcEEEEEeCCEEEEEEeeccCCcCccCCCCCCcEEEECCCEEEEEEEcHHHHHH
Confidence 35668899999999999999999999999999999999999999999987765889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHhc-----CCCcceeeEEEEEeCCCCeEEEEEcCCCceeecCeEEEe
Q psy2074 83 ISDFVSYNLDLQRMELGEEPLVYSGAKLFQELVYSY-----RDSLTAGIICAGWDRKKGGQVYCIPLGGMLMRQKMAMGG 157 (184)
Q Consensus 83 l~~~l~~~~~~~~~~~~~~~~~~~la~~l~~~l~~~-----r~p~~~s~llaG~D~~~~~~Ly~idp~G~~~~~~~~a~G 157 (184)
++++++.+++.|++.++++++++.+++.+++++|.+ .+||++++||||||++++|+||.+||+|++.++++.|+|
T Consensus 86 l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiG 165 (244)
T 1ryp_C 86 LINTARIHAQNYLKTYNEDIPVEILVRRLSDIKQGYTQHGGLRPFGVSFIYAGYDDRYGYQLYTSNPSGNYTGWKAISVG 165 (244)
T ss_dssp HHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBSSCCCCCEEEEEEEEETTTEEEEEEECTTCCEEEBSEEEES
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhccCCccceEEEEEEEEEcCCCCCEEEEECCCccEEeeeEEEEC
Confidence 999999999999999999999999999999999764 359999999999995589999999999999999999999
Q ss_pred cCHHhHHHHHhccCCCCCCHHHHhhc
Q psy2074 158 SGSTYLYGHMDNQFKENMTKKEAMST 183 (184)
Q Consensus 158 ~g~~~~~~~Le~~~~~~~s~eea~~l 183 (184)
+|+++++++||+.|+++||+|||+++
T Consensus 166 sgs~~a~~~Le~~~~~~ms~eea~~l 191 (244)
T 1ryp_C 166 ANTSAAQTLLQMDYKDDMKVDDAIEL 191 (244)
T ss_dssp TTHHHHHHHHHHHCCTTCCHHHHHHH
T ss_pred CCcHHHHHHHHHhhhcCCCHHHHHHH
Confidence 99999999999999999999999986
No 5
>1iru_E 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_D* 3une_D 3unf_D* 3unh_D
Probab=100.00 E-value=3.8e-51 Score=324.81 Aligned_cols=177 Identities=19% Similarity=0.279 Sum_probs=169.2
Q ss_pred cccccccCCCCCCCccccccccCCceEEEEEeCCeEEEEEcCccccCceeeecCCCceEEecCeEEEEecCChHHHHHHH
Q psy2074 5 DYNVNAYHGGVEAPDWLTAKHSCGTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAIS 84 (184)
Q Consensus 5 ~~~~~~~~G~l~qveya~~~~~~g~t~igi~~~dgVvla~d~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~ 84 (184)
+.++++|+|||+|||||.+|+++|+|+|||+++||||||+|+|.++|.++ +++.+||++|++|+++++||..+|++.++
T Consensus 11 ~~t~fsp~Grl~QvEya~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~-~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~ 89 (241)
T 1iru_E 11 GVNTFSPEGRLFQVEYDIEAIKLGSTAIGIQTSEGVCLAVEKRITSPLME-PSSIEKIVEIDAHIGCAMSGLIADAKTLI 89 (241)
T ss_dssp CTTCBCTTSCBHHHHHHHHHHTTSCCEEEEEETTEEEEEEECCCCCTTBC-TTSCCSEEEEETTEEEEEEECHHHHHHHH
T ss_pred CCceECCCCccHHHHHHHHHHHcCCcEEEEEcCCEEEEEEecccCCcCcC-ccccceEEEEcCCEEEEEeeChHHHHHHH
Confidence 34589999999999999999999999999999999999999999998776 88999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHhc----------CCCcceeeEEEEEeCCCCeEEEEEcCCCceeecCeE
Q psy2074 85 DFVSYNLDLQRMELGEEPLVYSGAKLFQELVYSY----------RDSLTAGIICAGWDRKKGGQVYCIPLGGMLMRQKMA 154 (184)
Q Consensus 85 ~~l~~~~~~~~~~~~~~~~~~~la~~l~~~l~~~----------r~p~~~s~llaG~D~~~~~~Ly~idp~G~~~~~~~~ 154 (184)
++++.+++.|+++++++++++.+++.++++++.+ .+||++++||||||+ ++|+||.+||+|++.++++.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~v~~~a~~l~~~~~~y~~~~~~~~l~~rp~~v~~lvaG~D~-~gp~Ly~idp~G~~~~~~~~ 168 (241)
T 1iru_E 90 DKARVETQNHWFTYNETMTVESVTQAVSNLALQFGEEDADPGAMSRPFGVALLFGGVDE-KGPQLFHMDPSGTFVQCDAR 168 (241)
T ss_dssp HHHHHHHHHHHHHHSSCCCHHHHHHHHHTTTTCBCSTTCCSSCBSSCCCEEEEEEEEET-TEEEEEEECTTSCEEEBSEE
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhccccccccccccceEEEEEEEEeC-CCCEEEEECCCCcEEecceE
Confidence 9999999999999999999999999999999665 459999999999995 89999999999999999999
Q ss_pred EEecCHHhHHHHHhccCCCCCCHHHHhhc
Q psy2074 155 MGGSGSTYLYGHMDNQFKENMTKKEAMST 183 (184)
Q Consensus 155 a~G~g~~~~~~~Le~~~~~~~s~eea~~l 183 (184)
|+|+|+++++++||+.|+++||+|||+++
T Consensus 169 aiGsgs~~a~~~Le~~~~~~ms~eea~~l 197 (241)
T 1iru_E 169 AIGSASEGAQSSLQELYHKSMTLKEAIKS 197 (241)
T ss_dssp EESTTHHHHHHHHHHHCCTTCCHHHHHHH
T ss_pred EECCCcHHHHHHHHHHhccCCCHHHHHHH
Confidence 99999999999999999999999999986
No 6
>1ryp_D 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_C* 1g65_C 2f16_C* 2fak_C* 2fny_C* 2gpl_C* 3d29_C* 3dy3_C* 3dy4_C* 3e47_C* 3gpj_C* 3gpt_C* 3gpw_C* 3hye_C* 3mg0_C* 3mg4_C* 3oeu_C* 3oev_C* 3okj_C* 3shj_C* ...
Probab=100.00 E-value=7.8e-51 Score=323.01 Aligned_cols=181 Identities=15% Similarity=0.225 Sum_probs=172.8
Q ss_pred cccccccccCCCCCCCccccccccCCceEEEEEeCCeEEEEEcCccccCceeeecCCCceEEecCeEEEEecCChHHHHH
Q psy2074 3 NKDYNVNAYHGGVEAPDWLTAKHSCGTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQA 82 (184)
Q Consensus 3 ~~~~~~~~~~G~l~qveya~~~~~~g~t~igi~~~dgVvla~d~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~ 82 (184)
..+.++++|+|||+|||||.+|+++|+|+|||+++||||||+|+|.+.|.++.+++.+||++|++|++|++||+.+|++.
T Consensus 3 d~~~t~fsp~Grl~QvEya~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~ 82 (241)
T 1ryp_D 3 DRALSIFSPDGHIFQVEYALEAVKRGTCAVGVKGKNCVVLGCERRSTLKLQDTRITPSKVSKIDSHVVLSFSGLNADSRI 82 (241)
T ss_dssp CCCCSCCBTTTBCHHHHHHHHHHTTSCCEEEEECSSCEEEEEECCCSSCCBCTTTSCCSEEEEETTEEEEEEECHHHHHH
T ss_pred CCCceeECCCCcchHHHHHHHHHHcCCCEEEEEeCCEEEEEEeeccCccCccccCCcCcEEEecCCEEEEEeecHHHHHH
Confidence 45678999999999999999999999999999999999999999999988776668999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHhcC-----CCcceeeEEEEEeCC-CCeEEEEEcCCCceeecCeEEE
Q psy2074 83 ISDFVSYNLDLQRMELGEEPLVYSGAKLFQELVYSYR-----DSLTAGIICAGWDRK-KGGQVYCIPLGGMLMRQKMAMG 156 (184)
Q Consensus 83 l~~~l~~~~~~~~~~~~~~~~~~~la~~l~~~l~~~r-----~p~~~s~llaG~D~~-~~~~Ly~idp~G~~~~~~~~a~ 156 (184)
++++++.+++.|++.++++|+++.+++++++++|.++ +||++++||||||++ ++|+||.+||+|++.++++.|+
T Consensus 83 l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~~~gp~Ly~idp~G~~~~~~~~ai 162 (241)
T 1ryp_D 83 LIEKARVEAQSHRLTLEDPVTVEYLTRYVAGVQQRYTQSGGVRPFGVSTLIAGFDPRDDEPKLYQTEPSGIYSSWSAQTI 162 (241)
T ss_dssp HHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSSTTBCCCSEEEEEEECCTTCCSCEEEEECTTSCEEEBSEEEE
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHccCCCCCCcceeeEEEEEcCCCCCeeEEEECCCCCEEEeeeEEE
Confidence 9999999999999999999999999999999999863 499999999999986 7899999999999999999999
Q ss_pred ecCHHhHHHHHhccC---CCCCCHHHHhhc
Q psy2074 157 GSGSTYLYGHMDNQF---KENMTKKEAMST 183 (184)
Q Consensus 157 G~g~~~~~~~Le~~~---~~~~s~eea~~l 183 (184)
|+++++++++||+.| +++||+|||+++
T Consensus 163 G~gs~~a~~~Le~~~~~~~~~ms~eea~~l 192 (241)
T 1ryp_D 163 GRNSKTVREFLEKNYDRKEPPATVEECVKL 192 (241)
T ss_dssp STTHHHHHHHHHTTCCTTSCCCSHHHHHHH
T ss_pred CCCcHHHHHHHHHhhhcccCCCCHHHHHHH
Confidence 999999999999999 999999999876
No 7
>1iru_G 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_F* 3une_F 3unf_F* 3unh_F
Probab=100.00 E-value=7.1e-51 Score=325.57 Aligned_cols=180 Identities=16% Similarity=0.183 Sum_probs=171.7
Q ss_pred cccccccccCCCCCCCccccccccCCceEEEEEeCCeEEEEEcCccccCceeeecCCCceEEecCeEEEEecCChHHHHH
Q psy2074 3 NKDYNVNAYHGGVEAPDWLTAKHSCGTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQA 82 (184)
Q Consensus 3 ~~~~~~~~~~G~l~qveya~~~~~~g~t~igi~~~dgVvla~d~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~ 82 (184)
..+.++++|+|||+|||||.+++++|+|+|||+++||||||+|+|.+.|.++ .++.+||++|++|++|++||+.+|++.
T Consensus 8 d~~~t~fsp~Grl~QvEyA~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~-~~~~~KI~~i~~~i~~~~aG~~aD~~~ 86 (254)
T 1iru_G 8 DLSASTFSPDGRVFQVEYAMKAVENSSTAIGIRCKDGVVFGVEKLVLSKLYE-EGSNKRLFNVDRHVGMAVAGLLADARS 86 (254)
T ss_dssp TSCTTCCCTTSCCHHHHHHHHHHHTSCCEEEEECSSBEEEEEEEECSCTTBC-TTTTCCEEEEETTEEEEEEECHHHHHH
T ss_pred CCCCccCCcCCccHHHHhHHHHHhcCCCEEEEEECCEEEEEEecccCCCCcC-cCcCCcEEEECCCEEEEEecChHHHHH
Confidence 3456789999999999999999999999999999999999999999998776 478999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHhcC-----CCcceeeEEEEEeCCCCeEEEEEcCCCceeecCeEEEe
Q psy2074 83 ISDFVSYNLDLQRMELGEEPLVYSGAKLFQELVYSYR-----DSLTAGIICAGWDRKKGGQVYCIPLGGMLMRQKMAMGG 157 (184)
Q Consensus 83 l~~~l~~~~~~~~~~~~~~~~~~~la~~l~~~l~~~r-----~p~~~s~llaG~D~~~~~~Ly~idp~G~~~~~~~~a~G 157 (184)
++++++.+++.|++.++++|+++.+++.+++++|.++ +||++++||||||++++|+||.+||+|++.++++.|+|
T Consensus 87 l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiG 166 (254)
T 1iru_G 87 LADIAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTLYSAVRPFGCSFMLGSYSVNDGAQLYMIDPSGVSYGYWGCAIG 166 (254)
T ss_dssp HHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSBSSBCCCSEEEEEEEEETTTEEEEEEECTTCCEEEBSEEEES
T ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccccccccceEEEEEEEEeCCCCcEEEEEcCCCCEEeeeeEEec
Confidence 9999999999999999999999999999999998875 59999999999995589999999999999999999999
Q ss_pred cCHHhHHHHHhccCCCCCCHHHHhhc
Q psy2074 158 SGSTYLYGHMDNQFKENMTKKEAMST 183 (184)
Q Consensus 158 ~g~~~~~~~Le~~~~~~~s~eea~~l 183 (184)
+++++++++||+.|+++||+|||+++
T Consensus 167 sgs~~a~~~Le~~~~~~ms~eea~~l 192 (254)
T 1iru_G 167 KARQAAKTEIEKLQMKEMTCRDIVKE 192 (254)
T ss_dssp TTHHHHHHHHTTSCGGGCCHHHHHHH
T ss_pred CccHHHHHHHHHhccCCCCHHHHHHH
Confidence 99999999999999999999999985
No 8
>1iru_B 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_A* 3une_A 3unf_A* 3unh_A
Probab=100.00 E-value=1.3e-50 Score=320.17 Aligned_cols=178 Identities=13% Similarity=0.190 Sum_probs=170.0
Q ss_pred ccccccccCCCCCCCccccccccCCceEEEEEeCCeEEEEEcCccccCceeeecCCCceEEecCeEEEEecCChHHHHHH
Q psy2074 4 KDYNVNAYHGGVEAPDWLTAKHSCGTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAI 83 (184)
Q Consensus 4 ~~~~~~~~~G~l~qveya~~~~~~g~t~igi~~~dgVvla~d~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l 83 (184)
.+.++++|+|||+|||||.+++++|+|+|||+++||||||+|+|.+ +.++.+++.+||++|++|+++++||..+|++.+
T Consensus 7 ~~~t~fsp~Grl~QvEya~~av~~Gtt~vgi~~~dgVvlaaD~r~~-~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l 85 (233)
T 1iru_B 7 FSLTTFSPSGKLVQIEYALAAVAGGAPSVGIKAANGVVLATEKKQK-SILYDERSVHKVEPITKHIGLVYSGMGPDYRVL 85 (233)
T ss_dssp SBSCCCCTTSCCHHHHHHHHHHHTSCCEEEEECSSCEEEEEECCCC-CSSBCSTTCCSSEESSSSEEEEEEECHHHHHHH
T ss_pred CCceeECCCCeEehhHhHHHHHHcCCcEEEEEeCCEEEEEEEecCC-ccccccccCCeEEEECCCEEEEEEEccHHHHHH
Confidence 4567899999999999999999999999999999999999999998 477788899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHhcC-----CCcceeeEEEEEeCCCCeEEEEEcCCCceeecCeEEEec
Q psy2074 84 SDFVSYNLDLQRMELGEEPLVYSGAKLFQELVYSYR-----DSLTAGIICAGWDRKKGGQVYCIPLGGMLMRQKMAMGGS 158 (184)
Q Consensus 84 ~~~l~~~~~~~~~~~~~~~~~~~la~~l~~~l~~~r-----~p~~~s~llaG~D~~~~~~Ly~idp~G~~~~~~~~a~G~ 158 (184)
+++++.+++.|++.++.+++++.++++++++++.++ +||++++||||||+ +||+||.+||+|++.++++.|+|+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~y~~~~~~rP~~v~~lvaG~D~-~gp~Ly~id~~G~~~~~~~~aiG~ 164 (233)
T 1iru_B 86 VHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLICGWNE-GRPYLFQSDPSGAYFAWKATAMGK 164 (233)
T ss_dssp HHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTSBTBCCCSEEEEEEEECS-SSEEEEEECTTSCEEEBSEEEEST
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCcCCCCCcEEEEEEEEEeC-CCCeEEEECCCCCEEEeeEEEECC
Confidence 999999999999999999999999999999997653 49999999999995 789999999999999999999999
Q ss_pred CHHhHHHHHhccCCCCCCHHHHhhc
Q psy2074 159 GSTYLYGHMDNQFKENMTKKEAMST 183 (184)
Q Consensus 159 g~~~~~~~Le~~~~~~~s~eea~~l 183 (184)
++++++++||+.|+++||+|||+++
T Consensus 165 gs~~a~~~Le~~~~~~ms~eea~~l 189 (233)
T 1iru_B 165 NYVNGKTFLEKRYNEDLELEDAIHT 189 (233)
T ss_dssp THHHHHHHHHHHCCTTCCHHHHHHH
T ss_pred CCHHHHHHHHHHhccCCCHHHHHHH
Confidence 9999999999999999999999986
No 9
>1iru_D 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unf_C* 3une_C* 3unh_C 3unb_C*
Probab=100.00 E-value=1.1e-50 Score=323.43 Aligned_cols=181 Identities=15% Similarity=0.235 Sum_probs=172.4
Q ss_pred CcccccccccCCCCCCCccccccccCCceEEEEEeCCeEEEEEcCccccCceeeecCCCceEEecCeEEEEecCChHHHH
Q psy2074 2 WNKDYNVNAYHGGVEAPDWLTAKHSCGTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQ 81 (184)
Q Consensus 2 ~~~~~~~~~~~G~l~qveya~~~~~~g~t~igi~~~dgVvla~d~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~ 81 (184)
+..+.++++|+|||+|||||.+++++|+|+|||+++||||||+|+|.+.+ ++..++.+||++|++|++|++||+.+|++
T Consensus 3 yd~~~t~fsp~Grl~QvEYA~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~-l~~~~~~~KI~~i~~~i~~~~aG~~aD~~ 81 (248)
T 1iru_D 3 YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGRDIVVLGVEKKSVAK-LQDERTVRKICALDDNVCMAFAGLTADAR 81 (248)
T ss_dssp CCCCCSCCCTTSCCHHHHHHHHHHHTSCCEEEECCSSEEEEEECCCCCCS-SSCGGGGCSEEESSSSCEEEEEECHHHHH
T ss_pred ccCCCceECCCCcchHHHHHHHHHHcCCCEEEEEeCCEEEEEEeeccccc-CccCCCCCcEEEEcCCEEEEEeecHHHHH
Confidence 44677899999999999999999999999999999999999999999997 56778899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHhcC-----CCcceeeEEEEEeCCCCeEEEEEcCCCceeecCeEEE
Q psy2074 82 AISDFVSYNLDLQRMELGEEPLVYSGAKLFQELVYSYR-----DSLTAGIICAGWDRKKGGQVYCIPLGGMLMRQKMAMG 156 (184)
Q Consensus 82 ~l~~~l~~~~~~~~~~~~~~~~~~~la~~l~~~l~~~r-----~p~~~s~llaG~D~~~~~~Ly~idp~G~~~~~~~~a~ 156 (184)
.++++++.+++.|++.++++++++.+++.+++++|.++ +||++++||||||++++|+||.+||+|++.++++.|+
T Consensus 82 ~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~ai 161 (248)
T 1iru_D 82 IVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAI 161 (248)
T ss_dssp HHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHTTSBTTBCCCCEEEEEEEECSSSCEEEEEECTTSCEEEBSEEEE
T ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhccCCcccccEEEEEEEEeCCCCcEEEEEcCCCcEEEeeEEEE
Confidence 99999999999999999999999999999999998764 4999999999999658999999999999999999999
Q ss_pred ecCHHhHHHHHhccCCCCC--CHHHHhhc
Q psy2074 157 GSGSTYLYGHMDNQFKENM--TKKEAMST 183 (184)
Q Consensus 157 G~g~~~~~~~Le~~~~~~~--s~eea~~l 183 (184)
|+++++++++||+.|+++| |+|||+++
T Consensus 162 G~gs~~a~~~Le~~~~~~m~~s~eea~~l 190 (248)
T 1iru_D 162 GRGAKSVREFLEKNYTDEAIETDDLTIKL 190 (248)
T ss_dssp STTHHHHHHHHTTTCCSSTTCSHHHHHHH
T ss_pred CCCcHHHHHHHHHhhcccccCCHHHHHHH
Confidence 9999999999999999999 99999886
No 10
>1iru_C 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_B* 3une_B 3unf_B* 3unh_B
Probab=100.00 E-value=1.4e-50 Score=325.03 Aligned_cols=181 Identities=15% Similarity=0.244 Sum_probs=173.3
Q ss_pred cccccccccCCCCCCCccccccccCCceEEEEEeCCeEEEEEcCccccCceeeecCCCceEEecCeEEEEecCChHHHHH
Q psy2074 3 NKDYNVNAYHGGVEAPDWLTAKHSCGTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQA 82 (184)
Q Consensus 3 ~~~~~~~~~~G~l~qveya~~~~~~g~t~igi~~~dgVvla~d~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~ 82 (184)
..+.++++|+|||+|||||.+++++|+|+|||+++||||||+|+|.++|.++.+++.+||++|++|++|++||+.+|++.
T Consensus 6 d~~~t~fsp~Grl~QvEYA~~av~~Gtt~vgi~~~dgVVlaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~ 85 (261)
T 1iru_C 6 DSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMACSVAGITSDANV 85 (261)
T ss_dssp CCCTTCCCTTSCCHHHHHHHHHHTTSCCEEEEBCSSEEEEEECCCCCCTTBCCCSSCSSEEECSSSEEEEEEECHHHHHH
T ss_pred CCCCccCCCCCeehHHHhHHHHHhcCCcEEEEEeCCEEEEEEecccCCcccccCCCCccEEEecCCEEEEEeEcHHHHHH
Confidence 34567899999999999999999999999999999999999999999998877777999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHhcC-----CCcceeeEEEEEeCCCCeEEEEEcCCCceeecCeEEEe
Q psy2074 83 ISDFVSYNLDLQRMELGEEPLVYSGAKLFQELVYSYR-----DSLTAGIICAGWDRKKGGQVYCIPLGGMLMRQKMAMGG 157 (184)
Q Consensus 83 l~~~l~~~~~~~~~~~~~~~~~~~la~~l~~~l~~~r-----~p~~~s~llaG~D~~~~~~Ly~idp~G~~~~~~~~a~G 157 (184)
++++++.+++.|++.++++++++.+++.+++++|.++ +||++++||||||++++|+||.+||+|++.++++.|+|
T Consensus 86 l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiG 165 (261)
T 1iru_C 86 LTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIG 165 (261)
T ss_dssp HHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTBSSCCCCCEEEEEEEEETTTEEEEEEEETTTEEEECSEEEES
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhccccCcCcceEEEEEEEEeCCCCcEEEEECCCceEEeeeeEEeC
Confidence 9999999999999999999999999999999998875 49999999999997689999999999999999999999
Q ss_pred cCHHhHHHHHhccCCC-CCCHHHHhhc
Q psy2074 158 SGSTYLYGHMDNQFKE-NMTKKEAMST 183 (184)
Q Consensus 158 ~g~~~~~~~Le~~~~~-~~s~eea~~l 183 (184)
+|+++++++||+.|++ +||+|||+++
T Consensus 166 sgs~~a~~~Le~~~~~~~ms~eeA~~l 192 (261)
T 1iru_C 166 NNSAAAVSMLKQDYKEGEMTLKSALAL 192 (261)
T ss_dssp TTTTHHHHHHHHHCCTTCCCHHHHHHH
T ss_pred cccHHHHHHHHHhhccCCCCHHHHHHH
Confidence 9999999999999999 9999999986
No 11
>3h4p_A Proteasome subunit alpha; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=3.8e-51 Score=328.64 Aligned_cols=178 Identities=21% Similarity=0.357 Sum_probs=169.3
Q ss_pred ccccccccCCCCCCCccccccccCCceEEEEEeCCeEEEEEcCccccCceeeecCCCceEEecCeEEEEecCChHHHHHH
Q psy2074 4 KDYNVNAYHGGVEAPDWLTAKHSCGTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAI 83 (184)
Q Consensus 4 ~~~~~~~~~G~l~qveya~~~~~~g~t~igi~~~dgVvla~d~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l 83 (184)
.+.++++|+|||+|||||.+|+++|+|+|||+++||||||+|+|.+++ ++.+++.+||++|++|++|++||+.+|++.+
T Consensus 14 ~~~t~fSp~Grl~QvEYA~~av~~Gtt~vgi~~~dgVVlaaD~r~~~~-li~~~~~~KI~~i~d~i~~~~aG~~aD~~~l 92 (264)
T 3h4p_A 14 RAITVFSPEGRLYQVEYAREAVRRGTTAIGIACKDGVVLAVDRRITSK-LVKIRSIEKIFQIDDHVAAATSGLVADARVL 92 (264)
T ss_dssp --CCCCCSSSSCHHHHHHHHHHHHSCCEEEECCSSEEEEEEECCCCST-TBCTTTCCCEEEEETTEEEEEEECSHHHHHH
T ss_pred CCcceECCCCeeHHHHhHHHHHhcCCcEEEEEECCEEEEEEecCccCC-ccccCccccEEEecCcEEEEeccchHHHHHH
Confidence 456789999999999999999999999999999999999999999986 6678899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHhcC-----CCcceeeEEEEEeCCCCeEEEEEcCCCceeecCeEEEec
Q psy2074 84 SDFVSYNLDLQRMELGEEPLVYSGAKLFQELVYSYR-----DSLTAGIICAGWDRKKGGQVYCIPLGGMLMRQKMAMGGS 158 (184)
Q Consensus 84 ~~~l~~~~~~~~~~~~~~~~~~~la~~l~~~l~~~r-----~p~~~s~llaG~D~~~~~~Ly~idp~G~~~~~~~~a~G~ 158 (184)
+++++.+++.|++.++++++++.+++.++++++.++ +||++++||||||+ +||+||.+||+|++.+++++|+|+
T Consensus 93 ~~~~r~~~~~y~~~~~~~i~v~~la~~l~~~~~~yt~~~~~rP~~v~~lvaG~D~-~gp~Ly~iDp~G~~~~~~~~aiGs 171 (264)
T 3h4p_A 93 IDRARLEAQIYRLTYGEEISIEMLAKKICDIKQAYTQHGGVRPFGVSLLIAGIDK-NEARLFETDPSGALIEYKATAIGS 171 (264)
T ss_dssp HTTHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHTTSBSSCCCCSEEEEEEEEET-TEEEEEEECTTCCCEEESEEEEST
T ss_pred HHHHHHHHHhhHHhcCCCCCHHHHHHHHHHHHHHHhhccCCCCeeEEEEEEEEeC-CcCEEEEECCCceEEecCeEEECC
Confidence 999999999999999999999999999999998764 49999999999997 799999999999999999999999
Q ss_pred CHHhHHHHHhccCCCCCCHHHHhhc
Q psy2074 159 GSTYLYGHMDNQFKENMTKKEAMST 183 (184)
Q Consensus 159 g~~~~~~~Le~~~~~~~s~eea~~l 183 (184)
++++++++||+.|+++||+|||+++
T Consensus 172 gs~~a~~~Le~~~~~~ms~eea~~l 196 (264)
T 3h4p_A 172 GRPVVMELLEKEYRDDITLDEGLEL 196 (264)
T ss_dssp THHHHTTTHHHHCCTTCCSHHHHHH
T ss_pred CHHHHHHHHHHhccCCCCHHHHHHH
Confidence 9999999999999999999999986
No 12
>1j2p_A Alpha-ring, proteasome alpha subunit; hydrolase; 2.60A {Archaeoglobus fulgidus} SCOP: d.153.1.4 PDB: 1j2q_A*
Probab=100.00 E-value=9.6e-50 Score=317.65 Aligned_cols=176 Identities=18% Similarity=0.291 Sum_probs=167.4
Q ss_pred cccccccCCCCCCCccccccccCCceEEEEEeCCeEEEEEcCccccCceeeecCCCceEEecCeEEEEecCChHHHHHHH
Q psy2074 5 DYNVNAYHGGVEAPDWLTAKHSCGTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAIS 84 (184)
Q Consensus 5 ~~~~~~~~G~l~qveya~~~~~~g~t~igi~~~dgVvla~d~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~ 84 (184)
+.++++|+|||+|||||.+++++|+|+|||+++||||||+|+|.+.+. +.+++.+||++|++|+++++||..+|++.++
T Consensus 11 ~~t~fsp~Grl~QvEya~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~l-~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~ 89 (246)
T 1j2p_A 11 AITVFSPDGRLFQVEYAREAVKRGATAIGIKCKEGVILIADKRVGSKL-LEKDTIEKIYKIDEHICAATSGLVADARVLI 89 (246)
T ss_dssp CTTCCCTTSCCHHHHHHHHHHHTSCCEEEEEETTEEEEEEECCCSCTT-BCGGGCCSEEECSSSEEEEEEECHHHHHHHH
T ss_pred CCceECCCCeehHHHhHHHHHHcCCcEEEEEECCEEEEEEeccCCccc-cccCccCcEEEECCCEEEEEeEccHHHHHHH
Confidence 346789999999999999999999999999999999999999999864 5578899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHhcC-----CCcceeeEEEEEeCCCCeEEEEEcCCCceeecCeEEEecC
Q psy2074 85 DFVSYNLDLQRMELGEEPLVYSGAKLFQELVYSYR-----DSLTAGIICAGWDRKKGGQVYCIPLGGMLMRQKMAMGGSG 159 (184)
Q Consensus 85 ~~l~~~~~~~~~~~~~~~~~~~la~~l~~~l~~~r-----~p~~~s~llaG~D~~~~~~Ly~idp~G~~~~~~~~a~G~g 159 (184)
++++.+++.|++.++++++++.+++.+++++|.++ +|+++++|||||| ++|+||.+||+|++.+++++|+|+|
T Consensus 90 ~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~y~~~~~~rp~~v~~lvaG~D--~gp~Ly~idp~G~~~~~~~~aiGsg 167 (246)
T 1j2p_A 90 DRARIEAQINRLTYDIPITVKELAKKICDFKQQYTQYGGVRPFGVSLLIAGVN--EVPKLYETDPSGALLEYKATAIGMG 167 (246)
T ss_dssp HHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHTTSBTTBCCCCEEEEEEEES--SSEEEEEECTTCCEEEBSEEEESTT
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcccCcccccEEEEEEEEC--CCCEEEEECCCceEEeeeEEEECCC
Confidence 99999999999999999999999999999997663 3999999999999 7899999999999999999999999
Q ss_pred HHhHHHHHhccCCCCCCHHHHhhc
Q psy2074 160 STYLYGHMDNQFKENMTKKEAMST 183 (184)
Q Consensus 160 ~~~~~~~Le~~~~~~~s~eea~~l 183 (184)
+++++++||+.|+++||+|||+++
T Consensus 168 s~~a~~~Le~~~~~~ms~eea~~l 191 (246)
T 1j2p_A 168 RMAVTEFFEKEYRDDLSFDDAMVL 191 (246)
T ss_dssp HHHHHHHHHHHCCTTCCHHHHHHH
T ss_pred cHHHHHHHHHHhccCCCHHHHHHH
Confidence 999999999999999999999986
No 13
>3nzj_F Proteasome component C1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 1z7q_G* 3nzw_F* 3nzx_F* 3un4_F* 3un8_F* 4b4t_G 4g4s_G* 3bdm_F* 1fnt_G* 2zcy_F*
Probab=100.00 E-value=4.7e-50 Score=325.39 Aligned_cols=179 Identities=18% Similarity=0.205 Sum_probs=170.2
Q ss_pred cccccccccCCCCCCCccccccccCCceEEEEEeCCeEEEEEcCccccCceeeecCCCceEEecCeEEEEecCChHHHHH
Q psy2074 3 NKDYNVNAYHGGVEAPDWLTAKHSCGTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQA 82 (184)
Q Consensus 3 ~~~~~~~~~~G~l~qveya~~~~~~g~t~igi~~~dgVvla~d~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~ 82 (184)
..+.++++|+|||+|||||.+|+++|+|+|||+++||||||+|+|.++|.++. .+.+||++|++||+|++||+.+|++.
T Consensus 9 d~~~t~fSP~Grl~QvEYA~kAv~~GtT~Vgik~kdGVVlAaD~r~t~gl~~~-~~~~KI~~I~d~i~~~~aG~~aD~~~ 87 (288)
T 3nzj_F 9 DLSNSVFSPDGRNFQVEYAVKAVENGTTSIGIKCNDGVVFAVEKLITSKLLVP-QKNVKIQVVDRHIGCVYSGLIPDGRH 87 (288)
T ss_dssp TSSTTCCCTTSCCHHHHHHHHHHHTSCCEEEEEETTEEEEEEEEEECCTTBCT-TCSCCCEEETTTEEEEEEECHHHHHH
T ss_pred cCCcccCCCCCchHHHHHHHHHHhcCCcEEEEEECCEEEEEEcCCcccCCccc-cccceEEEEcCCEEEEecCcHHHHHH
Confidence 34567899999999999999999999999999999999999999999987754 47899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHhcC-----CCcceeeEEEEEeCCCCeEEEEEcCCCceeecCeEEEe
Q psy2074 83 ISDFVSYNLDLQRMELGEEPLVYSGAKLFQELVYSYR-----DSLTAGIICAGWDRKKGGQVYCIPLGGMLMRQKMAMGG 157 (184)
Q Consensus 83 l~~~l~~~~~~~~~~~~~~~~~~~la~~l~~~l~~~r-----~p~~~s~llaG~D~~~~~~Ly~idp~G~~~~~~~~a~G 157 (184)
|+++++.+++.|++.++++|+++.+|+.+++++|.++ +||++++||||||+ +||+||.+||+|++.+++++|+|
T Consensus 88 l~~~lr~e~~~y~~~~~~~i~v~~lA~~l~~~l~~yt~~~~~rP~gv~~lvaG~D~-~Gp~Ly~iDp~G~~~~~~~~aiG 166 (288)
T 3nzj_F 88 LVNRGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDK-NGAHLYMLEPSGSYWGYKGAATG 166 (288)
T ss_dssp HHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSCTTBCCCCEEEEEEEEET-TEEEEEEECTTSCEEEBSEEEES
T ss_pred HHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHhccCCCceEEEEEEEEeC-CCCEEEEECCCCCEEEcCEEEEc
Confidence 9999999999999999999999999999999998763 49999999999998 78999999999999999999999
Q ss_pred cCHHhHHHHHhcc---CCCCCCHHHHhhc
Q psy2074 158 SGSTYLYGHMDNQ---FKENMTKKEAMST 183 (184)
Q Consensus 158 ~g~~~~~~~Le~~---~~~~~s~eea~~l 183 (184)
+++++++++||+. |+++||+|||+++
T Consensus 167 sgs~~a~~~Lek~~~~~~~~ms~eEAv~l 195 (288)
T 3nzj_F 167 KGRQSAKAELEKLVDHHPEGLSAREAVKQ 195 (288)
T ss_dssp TTHHHHHHHHHHHHHHCTTCCCHHHHHHH
T ss_pred CcHHHHHHHHHHhccccCCCCCHHHHHHH
Confidence 9999999999999 9999999999986
No 14
>1ryp_G 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_F* 1g65_F 1vsy_G 2f16_F* 2fak_F* 2fny_F* 2gpl_F* 3d29_F* 3dy3_F* 3dy4_F* 3e47_F* 3gpj_F* 3gpt_F* 3gpw_F* 3hye_F* 3l5q_L 3mg0_F* 3mg4_F* 3okj_F* 3shj_F* ...
Probab=100.00 E-value=7.7e-50 Score=317.88 Aligned_cols=179 Identities=18% Similarity=0.200 Sum_probs=169.5
Q ss_pred cccccccccCCCCCCCccccccccCCceEEEEEeCCeEEEEEcCccccCceeeecCCCceEEecCeEEEEecCChHHHHH
Q psy2074 3 NKDYNVNAYHGGVEAPDWLTAKHSCGTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQA 82 (184)
Q Consensus 3 ~~~~~~~~~~G~l~qveya~~~~~~g~t~igi~~~dgVvla~d~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~ 82 (184)
..+.++++|+|||+|||||.+++++|+|+|||+++||||||+|+|.++|.++.+ +.+||++|++|++|++||+.+|++.
T Consensus 5 d~~~t~fsp~Grl~QvEya~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~-~~~KI~~i~~~i~~~~aG~~aD~~~ 83 (244)
T 1ryp_G 5 DLSNSVFSPDGRNFQVEYAVKAVENGTTSIGIKCNDGVVFAVEKLITSKLLVPQ-KNVKIQVVDRHIGCVYSGLIPDGRH 83 (244)
T ss_dssp TSSTTCCCTTSCCHHHHHHHHHHHTSCCEEEEEETTEEEEEEEEECCCTTBCTT-TSCCCEEETTTEEEEEEECHHHHHH
T ss_pred cCCcccCCcCCchHHHHhHHHHHHCCCCEEEEEECCEEEEEEecccCCCCcccc-ccCceEEecCCEEEEEcccHHHHHH
Confidence 356788999999999999999999999999999999999999999999877654 4599999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHhc-----CCCcceeeEEEEEeCCCCeEEEEEcCCCceeecCeEEEe
Q psy2074 83 ISDFVSYNLDLQRMELGEEPLVYSGAKLFQELVYSY-----RDSLTAGIICAGWDRKKGGQVYCIPLGGMLMRQKMAMGG 157 (184)
Q Consensus 83 l~~~l~~~~~~~~~~~~~~~~~~~la~~l~~~l~~~-----r~p~~~s~llaG~D~~~~~~Ly~idp~G~~~~~~~~a~G 157 (184)
++++++.+++.|++.++++++++.+++.+++++|.+ .+||++++||||||+ +||+||.+||+|++.++++.|+|
T Consensus 84 l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~rp~~v~~lvaG~D~-~gp~Ly~idp~G~~~~~~~~aiG 162 (244)
T 1ryp_G 84 LVNRGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDK-NGAHLYMLEPSGSYWGYKGAATG 162 (244)
T ss_dssp HHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSCTTBCCCCEEEEEEEEET-TEEEEEEECTTSCEEEBSEEEES
T ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcccCccCceEEEEEEEEeC-CcCEEEEECCCCCEEEeeEEEEC
Confidence 999999999999999999999999999999999775 259999999999997 79999999999999999999999
Q ss_pred cCHHhHHHHHhcc---CCCCCCHHHHhhc
Q psy2074 158 SGSTYLYGHMDNQ---FKENMTKKEAMST 183 (184)
Q Consensus 158 ~g~~~~~~~Le~~---~~~~~s~eea~~l 183 (184)
+|+++++++||+. |+++||+|||+++
T Consensus 163 ~gs~~a~~~Le~~~~~~~~~ms~eea~~l 191 (244)
T 1ryp_G 163 KGRQSAKAELEKLVDHHPEGLSAREAVKQ 191 (244)
T ss_dssp TTHHHHHHHHHHHHHHCTTCCCHHHHHHH
T ss_pred CChHHHHHHHHHhHhhcCCCCCHHHHHHH
Confidence 9999999999997 9999999999986
No 15
>1iru_F 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_E* 3une_E 3unf_E* 3unh_E
Probab=100.00 E-value=3.7e-50 Score=322.86 Aligned_cols=179 Identities=16% Similarity=0.197 Sum_probs=167.4
Q ss_pred CCccccc----ccccCCCCCCCccccccccCCceEEEEEeCCeEEEEEcCccccCceeeecCCCceEEecCeEEEEecCC
Q psy2074 1 MWNKDYN----VNAYHGGVEAPDWLTAKHSCGTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGS 76 (184)
Q Consensus 1 ~~~~~~~----~~~~~G~l~qveya~~~~~~g~t~igi~~~dgVvla~d~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~ 76 (184)
|||+.|+ +++|+|||+|||||.+++++|+|+|||+++||||||+|+|.+.|.. ++.+||++|++|++|++||+
T Consensus 1 m~~~~yd~~~t~fsP~Grl~QvEYA~~av~~Gtt~vgi~~~dgVVlaaD~r~~~gl~---~~~~KI~~i~~~i~~~~aG~ 77 (263)
T 1iru_F 1 MFRNQYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELA---AHQKKILHVDNHIGISIAGL 77 (263)
T ss_dssp ---CTTTSCTTCCCTTSCCHHHHHHHHHHHHSCCEEEEECSSEEEEEEECCCSSTTB---CCCCCEEEEETTEEEEEEEC
T ss_pred CCcCCCCCCCccCCCCCeehHHHHHHHHHHcCCcEEEEEeCCEEEEEEecccccccc---cchhcEEEEcCCEEEEEeCC
Confidence 7887775 7899999999999999999999999999999999999999999743 47899999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHhc-----CCCcceeeEEEEEeCCCCeEEEEEcCCCceeec
Q psy2074 77 AADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQELVYSY-----RDSLTAGIICAGWDRKKGGQVYCIPLGGMLMRQ 151 (184)
Q Consensus 77 ~~D~~~l~~~l~~~~~~~~~~~~~~~~~~~la~~l~~~l~~~-----r~p~~~s~llaG~D~~~~~~Ly~idp~G~~~~~ 151 (184)
.+|++.++++++.+++.|++.++++|+++.+++.+++++|.+ .+||++++||||||+ +||+||.+||+|++.++
T Consensus 78 ~aD~~~l~~~~~~~~~~~~~~~~~~i~v~~la~~l~~~l~~~t~~~~~RP~~v~~lvaG~D~-~gp~Ly~idp~G~~~~~ 156 (263)
T 1iru_F 78 TADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYDD-MGPHIFQTCPSANYFDC 156 (263)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBTTCCCCCEEEEEEEEET-TEEEEEEECSSSCEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhhcccccccceEEEEEEEEcC-CCCEEEEECCCCCEEEe
Confidence 999999999999999999999999999999999999999854 359999999999998 78999999999999999
Q ss_pred CeEEEecCHHhHHHHHhccCCC--CCCHHHHhhc
Q psy2074 152 KMAMGGSGSTYLYGHMDNQFKE--NMTKKEAMST 183 (184)
Q Consensus 152 ~~~a~G~g~~~~~~~Le~~~~~--~~s~eea~~l 183 (184)
++.|+|+++++++++||+.|++ +||+|||+++
T Consensus 157 ~~~aiGsgs~~a~~~Le~~~~~~~~ms~eea~~l 190 (263)
T 1iru_F 157 RAMSIGARSQSARTYLERHMSEFMECNLNELVKH 190 (263)
T ss_dssp SEEEESTTHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred eEEEcCcccHHHHHHHHHHhcccCCCCHHHHHHH
Confidence 9999999999999999999998 9999999986
No 16
>1iru_A 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_G* 3une_G 3unf_G* 3unh_G
Probab=100.00 E-value=8.4e-50 Score=317.97 Aligned_cols=179 Identities=20% Similarity=0.246 Sum_probs=169.3
Q ss_pred ccccccccCCCCCCCccccccccC-CceEEEEEeCCeEEEEEcCccccCceeeecCCCceEEecCeEEEEecCChHHHHH
Q psy2074 4 KDYNVNAYHGGVEAPDWLTAKHSC-GTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQA 82 (184)
Q Consensus 4 ~~~~~~~~~G~l~qveya~~~~~~-g~t~igi~~~dgVvla~d~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~ 82 (184)
.+.++++|+|||+|||||.+++++ |+|+|||+++||||||+|+|.+ +.++.+++.+||++|++|+++++||+.+|++.
T Consensus 11 ~~~t~fsp~Grl~QvEya~~av~~~Gtt~vgi~~~dgVvlaaD~r~~-~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~ 89 (246)
T 1iru_A 11 RHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVP-DKLLDSSTVTHLFKITENIGCVMTGMTADSRS 89 (246)
T ss_dssp TTSSCCCTTSCCHHHHHHHHHHHTTCCEEEEEECSSEEEEEEECCCC-CSSBCGGGCCSEEESSSSCEEEEEECHHHHHH
T ss_pred CCCccCCCCCeehHHHHHHHHHhcCCCCEEEEEeCCEEEEEEeecCC-CcccCCCccCceEEECCCEEEEEeccHHHHHH
Confidence 445789999999999999999999 9999999999999999999999 57888889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHhc-----CCCcceeeEEEEEeCCCCeEEEEEcCCCceeecCeEEEe
Q psy2074 83 ISDFVSYNLDLQRMELGEEPLVYSGAKLFQELVYSY-----RDSLTAGIICAGWDRKKGGQVYCIPLGGMLMRQKMAMGG 157 (184)
Q Consensus 83 l~~~l~~~~~~~~~~~~~~~~~~~la~~l~~~l~~~-----r~p~~~s~llaG~D~~~~~~Ly~idp~G~~~~~~~~a~G 157 (184)
+.++++.+++.|++.++++++++.+++.++++++.+ .+||++++||||||++++|+||.+||+|++.+++++|+|
T Consensus 90 l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~y~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiG 169 (246)
T 1iru_A 90 QVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAG 169 (246)
T ss_dssp HHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBSSBCCCSEEEEEEEEETTTEEEEEEECTTSCEEEBSEEEEE
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcCCCCCCcceEEEEEEEeCCCCeEEEEEcCCeeEEEeeEEEEC
Confidence 999999999999999999999999999999986443 359999999999998689999999999999999999999
Q ss_pred cCHHhHHHHHhccCCC--CCCHHHHhhc
Q psy2074 158 SGSTYLYGHMDNQFKE--NMTKKEAMST 183 (184)
Q Consensus 158 ~g~~~~~~~Le~~~~~--~~s~eea~~l 183 (184)
+|+++++++||+.|++ +||+|||+++
T Consensus 170 ~gs~~a~~~Le~~~~~~~~ms~eea~~l 197 (246)
T 1iru_A 170 VKQTESTSFLEKKVKKKFDWTFEQTVET 197 (246)
T ss_dssp TTHHHHHHHHHHHTTSCCCCCHHHHHHH
T ss_pred CCcHHHHHHHHHhhcccCCCCHHHHHHH
Confidence 9999999999999999 9999999876
No 17
>1ryp_B 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_B 1g0u_A* 1jd2_A* 1g65_A 1z7q_B 2f16_A* 2fak_A* 2fny_A* 2gpl_A* 2zcy_A* 3bdm_A* 3d29_A* 3dy3_A* 3dy4_A* 3e47_A* 3gpj_A* 3gpt_A* 3gpw_A* 3hye_A* 3mg0_A* ...
Probab=100.00 E-value=1.8e-49 Score=316.70 Aligned_cols=180 Identities=17% Similarity=0.221 Sum_probs=169.7
Q ss_pred cccccccccCCCCCCCccccccccCCceEEEEEeCCeEEEEEcCccccCceeeecCCCceEEecCeEEEEecCChHHHHH
Q psy2074 3 NKDYNVNAYHGGVEAPDWLTAKHSCGTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQA 82 (184)
Q Consensus 3 ~~~~~~~~~~G~l~qveya~~~~~~g~t~igi~~~dgVvla~d~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~ 82 (184)
..+.++++|+|||+|||||.+++++|+|+|||+++||||||+|+|.+ +.++.+++.+||++|++|++|++||..+|++.
T Consensus 6 d~~~t~fsp~Grl~QvEyA~~av~~Gtt~vgi~~~dgVvlaaD~r~~-~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~ 84 (250)
T 1ryp_B 6 SFSLTTFSPSGKLGQIDYALTAVKQGVTSLGIKATNGVVIATEKKSS-SPLAMSETLSKVSLLTPDIGAVYSGMGPDYRV 84 (250)
T ss_dssp CSBSSCBCTTSCBHHHHHHHHHHHTSCCEEEEEETTEEEEEEECCCS-CSSBCGGGCCSSEEEETTEEEEEEECHHHHHH
T ss_pred cCCceeECCCCccHHHHhHHHHHHcCCcEEEEEECCEEEEEEeccCC-CccccCcccCceEEECCCEEEEeeeCHHHHHH
Confidence 35668899999999999999999999999999999999999999998 57888899999999999999999999999999
Q ss_pred HHHHHHHHHHH-HHHHhCCCCcHHHHHHHHHHHHHhcC-----CCcceeeEEEEEeCCCCeEEEEEcCCCceeecCeEEE
Q psy2074 83 ISDFVSYNLDL-QRMELGEEPLVYSGAKLFQELVYSYR-----DSLTAGIICAGWDRKKGGQVYCIPLGGMLMRQKMAMG 156 (184)
Q Consensus 83 l~~~l~~~~~~-~~~~~~~~~~~~~la~~l~~~l~~~r-----~p~~~s~llaG~D~~~~~~Ly~idp~G~~~~~~~~a~ 156 (184)
++++++.+++. |++.++.+++++.+++.++++++.++ +||++++||||||++++|+||.+||+|++.++++.|+
T Consensus 85 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~~~~~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~ai 164 (250)
T 1ryp_B 85 LVDKSRKVAHTSYKRIYGEYPPTKLLVSEVAKIMQEATQSGGVRPFGVSLLIAGHDEFNGFSLYQVDPSGSYFPWKATAI 164 (250)
T ss_dssp HHHHHHHHHHHTTHHHHSSCCCHHHHHHHHHHHHHHTTTSBTBCCCCEEEEEEEEETTTEEEEEEECTTSCEEEBSEEEE
T ss_pred HHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCcccceEEEEEEEEcCCCCcEEEEECCCCCEEeeceeEe
Confidence 99999999999 99999999999999888888876543 5999999999999867999999999999999999999
Q ss_pred ecCHHhHHHHHhccCCCCCCHHHHhhc
Q psy2074 157 GSGSTYLYGHMDNQFKENMTKKEAMST 183 (184)
Q Consensus 157 G~g~~~~~~~Le~~~~~~~s~eea~~l 183 (184)
|+|+++++++||+.|+++||+|||+++
T Consensus 165 Gsgs~~a~~~Le~~~~~~ms~eea~~l 191 (250)
T 1ryp_B 165 GKGSVAAKTFLEKRWNDELELEDAIHI 191 (250)
T ss_dssp STTHHHHHHHHHHHCCTTCCHHHHHHH
T ss_pred cCccHHHHHHHHHHhccCCCHHHHHHH
Confidence 999999999999999999999999886
No 18
>1ryp_F 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_E* 1g65_E 2f16_E* 2fak_E* 2fny_E* 2gpl_E* 3d29_E* 3dy3_E* 3dy4_E* 3e47_E* 3gpj_E* 3gpt_E* 3gpw_E* 3hye_E* 3mg0_E* 3mg4_E* 3oeu_E* 3oev_E* 3okj_E* 3shj_E* ...
Probab=100.00 E-value=1.1e-49 Score=314.96 Aligned_cols=175 Identities=12% Similarity=0.179 Sum_probs=165.8
Q ss_pred cccccccCCCCCCCccccccccCCceEEEEEeCCeEEEEEcCccccCceeeecCCCceEEecCeEEEEecCChHHHHHHH
Q psy2074 5 DYNVNAYHGGVEAPDWLTAKHSCGTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAIS 84 (184)
Q Consensus 5 ~~~~~~~~G~l~qveya~~~~~~g~t~igi~~~dgVvla~d~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~ 84 (184)
+.++++|+|||+|||||.+++++|+|+|||+++||||||+|+|.+.+.. ++.+||++|++|+++++||+.+|++.+.
T Consensus 8 ~~t~fsp~Grl~QvEyA~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~l~---~~~~Ki~~i~~~i~~~~aG~~aD~~~l~ 84 (233)
T 1ryp_F 8 DTVTFSPTGRLFQVEYALEAIKQGSVTVGLRSNTHAVLVALKRNADELS---SYQKKIIKCDEHMGLSLAGLAPDARVLS 84 (233)
T ss_dssp CTTCCCTTSCCHHHHHHHHHHHTSCCEEEEECSSEEEEEEECCCSSTTB---CCCCCEEEEETTEEEEEEECHHHHHHHH
T ss_pred CCccCCCCCeehHHHHHHHHHHcCCCEEEEEcCCEEEEEEEeccccccc---cccCcEEEEcCCEEEEEEechHHHHHHH
Confidence 4467899999999999999999999999999999999999999999743 4789999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHhc-----CCCcceeeEEEEEeCCCCeEEEEEcCCCceeecCeEEEecC
Q psy2074 85 DFVSYNLDLQRMELGEEPLVYSGAKLFQELVYSY-----RDSLTAGIICAGWDRKKGGQVYCIPLGGMLMRQKMAMGGSG 159 (184)
Q Consensus 85 ~~l~~~~~~~~~~~~~~~~~~~la~~l~~~l~~~-----r~p~~~s~llaG~D~~~~~~Ly~idp~G~~~~~~~~a~G~g 159 (184)
++++.+++.|+++++++|+++.+++.++++++.+ .+||++++||||||+ .||+||.+||+|++.++++.|+|++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~rp~~v~~lvaG~D~-~gp~Ly~idp~G~~~~~~~~aiG~g 163 (233)
T 1ryp_F 85 NYLRQQCNYSSLVFNRKLAVERAGHLLCDKAQKNTQSYGGRPYGVGLLIIGYDK-SGAHLLEFQPSGNVTELYGTAIGAR 163 (233)
T ss_dssp HHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHBTTCCCCCEEEEEEEEET-TEEEEEEECTTSCEEEESEEEESTT
T ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcccCCcCcceEEEEEEEeC-CcCEEEEECCCCCeeeeeEEEECCC
Confidence 9999999999999999999999999999999753 359999999999998 7899999999999999999999999
Q ss_pred HHhHHHHHhccCCC--CC--CHHHHhhc
Q psy2074 160 STYLYGHMDNQFKE--NM--TKKEAMST 183 (184)
Q Consensus 160 ~~~~~~~Le~~~~~--~~--s~eea~~l 183 (184)
+++++++||+.|++ +| |+|||+++
T Consensus 164 s~~a~~~Le~~~~~~~~m~~s~eea~~~ 191 (233)
T 1ryp_F 164 SQGAKTYLERTLDTFIKIDGNPDELIKA 191 (233)
T ss_dssp HHHHHHHHHHHHHHHTTCCSCHHHHHHH
T ss_pred cHHHHHHHHHHhccccccCCCHHHHHHH
Confidence 99999999999998 99 99999986
No 19
>1ryp_H 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 3nzj_N* 3nzw_N* 3nzx_N* 1vsy_H 3l5q_B 1g65_N* 1fnt_H 1g0u_N* 1jd2_N* 1z7q_H 2f16_N* 2fak_N* 2fny_N* 2gpl_N* 2zcy_N* 3bdm_N* 3d29_N* 3dy3_N* 3dy4_N* 3e47_N* ...
Probab=100.00 E-value=1.8e-43 Score=274.27 Aligned_cols=163 Identities=54% Similarity=0.914 Sum_probs=157.5
Q ss_pred cccccccCCceEEEEEeCCeEEEEEcCccccCceeeecCCCceEEecCeEEEEecCChHHHHHHHHHHHHHHHHHHHHhC
Q psy2074 20 WLTAKHSCGTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELG 99 (184)
Q Consensus 20 ya~~~~~~g~t~igi~~~dgVvla~d~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~ 99 (184)
+..+++++|+|+|||+++||||||+|+|.++|.++.+++.+||++|++|+++++||..+|++.+.++++.+++.|++.++
T Consensus 1 ~~~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~ 80 (205)
T 1ryp_H 1 LKKGEVSLGASIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHDKIWCCRSGSAADTQAIADIVQYHLELYTSQYG 80 (205)
T ss_dssp CCTTCCBCCCCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCcCCceEEEEEeCCEEEEEEcCCcccCcEEEcCCcCceEEcCCCEEEEccCCHHHHHHHHHHHHHHHHHHHHHhC
Confidence 35789999999999999999999999999999888899999999999999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHhcCCCcceeeEEEEEeCCCCeEEEEEcCCCceeecCeEEEecCHHhHHHHHhccCCCCCCHHH
Q psy2074 100 EEPLVYSGAKLFQELVYSYRDSLTAGIICAGWDRKKGGQVYCIPLGGMLMRQKMAMGGSGSTYLYGHMDNQFKENMTKKE 179 (184)
Q Consensus 100 ~~~~~~~la~~l~~~l~~~r~p~~~s~llaG~D~~~~~~Ly~idp~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~ee 179 (184)
+ ++++.+++.+++++|.+|..+++++||||||++++|+||.+||+|++.++++.|+|+|+++++++||+.|+++||+||
T Consensus 81 ~-~~v~~la~~l~~~~~~~~~~~~~~~lvaG~D~~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~s~ee 159 (205)
T 1ryp_H 81 T-PSTETAASVFKELCYENKDNLTAGIIVAGYDDKNKGEVYTIPLGGSVHKLPYAIAGSGSTFIYGYCDKNFRENMSKEE 159 (205)
T ss_dssp S-CCHHHHHHHHHHHHHHTTTTCCEEEEEEEEETTTEEEEEEECTTSCCEEESEEEESGGGGGGHHHHHHHCCTTCCHHH
T ss_pred C-CCHHHHHHHHHHHHHhhhcCceEEEEEEEEecCCCcEEEEECCCccEEecCEEEEEecHHHHHHHHHhccCCCCCHHH
Confidence 9 999999999999999998789999999999986789999999999999999999999999999999999999999999
Q ss_pred Hhhc
Q psy2074 180 AMST 183 (184)
Q Consensus 180 a~~l 183 (184)
|+++
T Consensus 160 a~~l 163 (205)
T 1ryp_H 160 TVDF 163 (205)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9986
No 20
>3nzj_H Proteasome component PUP1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_H* 3nzx_H* 4b4t_2
Probab=100.00 E-value=4.2e-43 Score=281.21 Aligned_cols=162 Identities=33% Similarity=0.557 Sum_probs=151.2
Q ss_pred ccccccCCceEEEEEeCCeEEEEEcCccccCceeeecCCCceEEecCeEEEEecCChHHHHHHHHHHHHHHHHHHHHhCC
Q psy2074 21 LTAKHSCGTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGE 100 (184)
Q Consensus 21 a~~~~~~g~t~igi~~~dgVvla~d~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~ 100 (184)
.++++++|+|+|||+++||||||+|+|.++|.++.+++.+||++|++|++|++||+.+|++.++++++.+++.|++.+++
T Consensus 22 ~~kav~~GtTivgi~~kdGVVlAaD~r~t~g~li~~~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~lr~~~~~~~~~~~~ 101 (261)
T 3nzj_H 22 QPKATSTGTTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYTSR 101 (261)
T ss_dssp --------CCEEEEEETTEEEEEEECCEEETTEEEETTCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred CCcccccCceEEEEEECCEEEEEEcCCcccCCeeccCCcceEEEEcCCEEEEeccCHHHHHHHHHHHHHHHHHhHHhhCC
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHhcCCCcceeeEEEEEeCCCCeEEEEEcCCCceeecCeEEEecCHHhHHHHHhccCCCCCCHHHH
Q psy2074 101 EPLVYSGAKLFQELVYSYRDSLTAGIICAGWDRKKGGQVYCIPLGGMLMRQKMAMGGSGSTYLYGHMDNQFKENMTKKEA 180 (184)
Q Consensus 101 ~~~~~~la~~l~~~l~~~r~p~~~s~llaG~D~~~~~~Ly~idp~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~eea 180 (184)
+++++.+++++++.++++++|+++++||||||+ .||+||.+||+|++.++++.|+|+|+++++++||+.|+++||+|||
T Consensus 102 ~~~v~~~a~~l~~~l~~~~~~~gv~llvaG~D~-~Gp~Ly~iDp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eEA 180 (261)
T 3nzj_H 102 EPRVVSALQMLKQHLFKYQGHIGAYLIVAGVDP-TGSHLFSIHAHGSTDVGYYLSLGSGSLAAMAVLESHWKQDLTKEEA 180 (261)
T ss_dssp CCCHHHHHHHHHHHHHHTTTCSCEEEEEEEEET-TEEEEEEECTTSCEEECSEEEESTTHHHHHHHHHHHCCSSCCHHHH
T ss_pred CCCHHHHHHHHHHHHHHhcCcccEEEEEEEEeC-CCCEEEEECCCccEEecCeEEeccchHHHHHHHHHHhccCCCHHHH
Confidence 999999999999999999999999999999998 7899999999999999999999999999999999999999999999
Q ss_pred hhc
Q psy2074 181 MST 183 (184)
Q Consensus 181 ~~l 183 (184)
+++
T Consensus 181 ~~l 183 (261)
T 3nzj_H 181 IKL 183 (261)
T ss_dssp HHH
T ss_pred HHH
Confidence 986
No 21
>1yar_H Proteasome beta subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_H 1yau_H 3ipm_H 1pma_B 3jrm_H 3c92_H 3c91_H 3jse_H 3jtl_H
Probab=100.00 E-value=7.3e-43 Score=273.21 Aligned_cols=159 Identities=20% Similarity=0.375 Sum_probs=149.2
Q ss_pred ccccCCceEEEEEeCCeEEEEEcCccccCceeeecCCCceEEecCeEEEEecCChHHHHHHHHHHHHHHHHHHHHhCCCC
Q psy2074 23 AKHSCGTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEP 102 (184)
Q Consensus 23 ~~~~~g~t~igi~~~dgVvla~d~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~ 102 (184)
.++.+|+|+|||+++||||||+|+|.++|.++.+++.+||++|++++++++||+.+|++.++++++.+++.|++++++++
T Consensus 3 ~~~~~Gtt~vgi~~~dgVvlaaD~r~~~g~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~ 82 (217)
T 1yar_H 3 QTLETGTTTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQVLVRYMKAELELYRLQRRVNM 82 (217)
T ss_dssp ------CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred CCCCCCccEEEEEeCCEEEEEEcCCCCCCCEEecCccCCeEEeCCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHhcC-CCcceeeEEEEEeCCCCeEEEEEcCCCceeecCeEEEecCHHhHHHHHhccCCCCCCHHHHh
Q psy2074 103 LVYSGAKLFQELVYSYR-DSLTAGIICAGWDRKKGGQVYCIPLGGMLMRQKMAMGGSGSTYLYGHMDNQFKENMTKKEAM 181 (184)
Q Consensus 103 ~~~~la~~l~~~l~~~r-~p~~~s~llaG~D~~~~~~Ly~idp~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~eea~ 181 (184)
+++.+++.+++++|.+| +||++++|||||| +||+||.+||+|++.++++.|+|+|+++++++||+.|+++||+|||+
T Consensus 83 ~v~~la~~l~~~~~~~r~rp~~v~~lvaG~D--~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~s~eea~ 160 (217)
T 1yar_H 83 PIEAVATLLSNMLNQVKYMPYMVQLLVGGID--TAPHVFSIDAAGGSVEDIYASTGSGSPFVYGVLESQYSEKMTVDEGV 160 (217)
T ss_dssp CHHHHHHHHHHHHHHTTTSCCCEEEEEEEES--SSEEEEEECTTCCEEEESEEEESTTHHHHHHHHHHHCCTTCCHHHHH
T ss_pred CHHHHHHHHHHHHHhcCCCCceEEEEEEEEC--CCCEEEEECCCCCeEecCEEEEcCCHHHHHHHHHhhcccCCCHHHHH
Confidence 99999999999999876 4999999999999 68999999999999999999999999999999999999999999999
Q ss_pred hc
Q psy2074 182 ST 183 (184)
Q Consensus 182 ~l 183 (184)
++
T Consensus 161 ~l 162 (217)
T 1yar_H 161 DL 162 (217)
T ss_dssp HH
T ss_pred HH
Confidence 86
No 22
>3nzj_K Proteasome component PRE2; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_K* 3nzx_K* 4b4t_5
Probab=100.00 E-value=9.6e-43 Score=282.35 Aligned_cols=165 Identities=27% Similarity=0.508 Sum_probs=151.6
Q ss_pred ccccccccCCceEEEEEeCCeEEEEEcCccccCceeeecCCCceEEecCeEEEEecCChHHHHHHHHHHHHHHHHHHHHh
Q psy2074 19 DWLTAKHSCGTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMEL 98 (184)
Q Consensus 19 eya~~~~~~g~t~igi~~~dgVvla~d~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~ 98 (184)
.++..++.+|+|+|||+++||||||+|+|.+.|.++.+++.+||++|++|++++++|..+|++.+.++++.+++.|++++
T Consensus 66 ~~~~~~v~~GtT~vgik~~dGVVlAaD~r~t~G~li~~~~~~KI~~I~d~i~~~~aG~~AD~~~l~~~lr~~~~~y~~~~ 145 (287)
T 3nzj_K 66 PDCKIKIAHGTTTLAFRFQGGIIVAVDSRATAGNWVASQTVKKVIEINPFLLGTMAGGAADCQFWETWLGSQCRLHELRE 145 (287)
T ss_dssp ----------CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECEECHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhheccCceEEEEEECCEEEEEEccccccCceeecCCcceEEEEcCcEEEEecCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcHHHHHHHHHHHHHhcCC-CcceeeEEEEEeCCCCeEEEEEcCCCceeecCeEEEecCHHhHHHHHhccCCCCCCH
Q psy2074 99 GEEPLVYSGAKLFQELVYSYRD-SLTAGIICAGWDRKKGGQVYCIPLGGMLMRQKMAMGGSGSTYLYGHMDNQFKENMTK 177 (184)
Q Consensus 99 ~~~~~~~~la~~l~~~l~~~r~-p~~~s~llaG~D~~~~~~Ly~idp~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~ 177 (184)
+++++++.+++++++++|.+|. |+++++||||||++++|+||.+||+|++.++++.|+|+|+++++++||+.|+++||+
T Consensus 146 ~~~isv~~la~~ls~~l~~~r~~p~~v~~lvaG~D~~~gp~Ly~iDp~G~~~~~~~~AiGsgs~~a~~~Le~~y~~dms~ 225 (287)
T 3nzj_K 146 KERISVAAASKILSNLVYQYKGAGLSMGTMICGYTRKEGPTIYYVDSDGTRLKGDIFCVGSGQTFAYGVLDSNYKWDLSV 225 (287)
T ss_dssp SSCCCHHHHHHHHHHHHHHTTTSCCCEEEEEEEEETTTEEEEEEEETTCCEEECSEEEESTTHHHHHHHHHTSCCTTCCH
T ss_pred CCCCCHHHHHHHHHHHHHhhcCCCceEEEEEEEEcCCCCCEEEEECCCceEEEcCeEEEecchHHHHHHHHHhhcCCCCH
Confidence 9999999999999999999886 999999999999768999999999999999999999999999999999999999999
Q ss_pred HHHhhc
Q psy2074 178 KEAMST 183 (184)
Q Consensus 178 eea~~l 183 (184)
|||+++
T Consensus 226 eEAi~l 231 (287)
T 3nzj_K 226 EDALYL 231 (287)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999986
No 23
>1iru_M 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_L* 3une_L 3unf_L* 3unh_L
Probab=100.00 E-value=2.2e-42 Score=269.64 Aligned_cols=159 Identities=24% Similarity=0.274 Sum_probs=152.8
Q ss_pred ccCCceEEEEEeCCeEEEEEcCccccCceeeecCCCceEEecCeEEEEecCChHHHHHHHHHHHHHHHHHHHHhCCCCcH
Q psy2074 25 HSCGTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLV 104 (184)
Q Consensus 25 ~~~g~t~igi~~~dgVvla~d~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~~ 104 (184)
+++|+|+|||+++||||||+|+|.++|.++.+++.+||++|++|+++++||+.+|++.++++++.+++.|++.+++++++
T Consensus 6 v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v 85 (213)
T 1iru_M 6 VFNGGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKAMTT 85 (213)
T ss_dssp CCCCCEEEEEEETTEEEEEEECCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred cCCCCcEEEEEeCCEEEEEECCCcccCCEEecCCCCcEEEcCCCEEEEccccHHHHHHHHHHHHHHHHHHHHhcCCCCCH
Confidence 57899999999999999999999999998888899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcC-CCcceeeEEEEEeCCCCeEEEEEcCCCceeecCeEEEecCHHhHHHHHhcc---------CCCC
Q psy2074 105 YSGAKLFQELVYSYR-DSLTAGIICAGWDRKKGGQVYCIPLGGMLMRQKMAMGGSGSTYLYGHMDNQ---------FKEN 174 (184)
Q Consensus 105 ~~la~~l~~~l~~~r-~p~~~s~llaG~D~~~~~~Ly~idp~G~~~~~~~~a~G~g~~~~~~~Le~~---------~~~~ 174 (184)
+.+++++++++|.+| +||++++||||||++++|+||.+||+|++.++++.|+|+|+++++++||+. |+++
T Consensus 86 ~~la~~l~~~~y~~r~~P~~v~~lvaG~D~~g~p~Ly~id~~G~~~~~~~~aiGsg~~~a~~~Le~~~~~~~~~~~~~~~ 165 (213)
T 1iru_M 86 GAIAAMLSTILYSRRFFPYYVYNIIGGLDEEGKGAVYSFDPVGSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQNVEHVP 165 (213)
T ss_dssp HHHHHHHHHHHHHTTTSCCCEEEEEEEECTTSCEEEEEECTTSCEEEESEEEEETTHHHHHHHHHHHTTCCSCSSCCCCC
T ss_pred HHHHHHHHHHHHhhCCCCceEEEEEEEEcCCCCEEEEEECCCCCEEECCEEEEeeCHHHHHHHHhhccccccccccCCCC
Confidence 999999999998776 599999999999986779999999999999999999999999999999999 8899
Q ss_pred CCHHHHhhc
Q psy2074 175 MTKKEAMST 183 (184)
Q Consensus 175 ~s~eea~~l 183 (184)
||+|||+++
T Consensus 166 ~s~eea~~l 174 (213)
T 1iru_M 166 LSLDRAMRL 174 (213)
T ss_dssp CCHHHHHHH
T ss_pred CCHHHHHHH
Confidence 999999986
No 24
>3h4p_a Proteasome subunit beta; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=1.2e-42 Score=272.35 Aligned_cols=156 Identities=28% Similarity=0.426 Sum_probs=150.8
Q ss_pred CceEEEEEeCCeEEEEEcCccccCceeeecCCCceEEecCeEEEEecCChHHHHHHHHHHHHHHHHHHHHhCCCCcHHHH
Q psy2074 28 GTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSG 107 (184)
Q Consensus 28 g~t~igi~~~dgVvla~d~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~~~~l 107 (184)
|+|+|||+++||||||+|+|.++|.++.+++.+||++|++|++|++||+.+|++.++++++.+++.|++.++++++++.+
T Consensus 1 Gtt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~l 80 (219)
T 3h4p_a 1 MTTTVGLICDDAVILATDKRASLGNLVADKEAKKLYKIDDYIAMTIAGSVGDAQAIVRLLIAEAKLYKMRTGRNIPPLAC 80 (219)
T ss_dssp -CCEEEEEETTEEEEECCCCEEETTEEEETTCCCEEEEETTEEEECCSCHHHHHHHHHHHHHHHHHHHHHTSSCCCHHHH
T ss_pred CccEEEEEECCEEEEEEcCCcccCCEeeccccceeEEecCCEEEEeeEcHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 79999999999999999999999989999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCC-CcceeeEEEEEeCCCCeEEEEEcCCCceeecC-eEEEecCHHhHHHHHhccCCCCCCHHHHhhc
Q psy2074 108 AKLFQELVYSYRD-SLTAGIICAGWDRKKGGQVYCIPLGGMLMRQK-MAMGGSGSTYLYGHMDNQFKENMTKKEAMST 183 (184)
Q Consensus 108 a~~l~~~l~~~r~-p~~~s~llaG~D~~~~~~Ly~idp~G~~~~~~-~~a~G~g~~~~~~~Le~~~~~~~s~eea~~l 183 (184)
++++++++|.+|. ||++++||||||+++||+||.+||+|++.+++ +.|+|+++++++++||+.|+++||+|||+++
T Consensus 81 a~~l~~~~~~~~~~P~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~~~ms~eea~~l 158 (219)
T 3h4p_a 81 ATLLSNILHSSRMFPFLTQIIIGGYDLLEGAKLFSLDPLGGMNEEKTFTATGSGSPIAYGVLEAGYDRDMSVEEGIKL 158 (219)
T ss_dssp HHHHHHHHHHTTTTTCCCCCEEEEEETTTEEEEEEECSSCCEEECSSEEEESTTHHHHHHHHHTSCCTTCCHHHHHHH
T ss_pred HHHHHHHHHHhcCCCceEEEEEEEEeCCCCcEEEEECCCCceEecCCEEEEcCCHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 9999999998864 99999999999987899999999999999999 9999999999999999999999999999986
No 25
>1q5q_A Proteasome alpha-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_A 1q5r_A
Probab=100.00 E-value=1.1e-43 Score=284.58 Aligned_cols=167 Identities=13% Similarity=0.209 Sum_probs=154.0
Q ss_pred cccCCCCC-CCccccccccCCceEEEEEeCCeEEEEEcCccccCceeeecCCCceEEecCeEEEEecCChHHHHHHHHHH
Q psy2074 9 NAYHGGVE-APDWLTAKHSCGTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFV 87 (184)
Q Consensus 9 ~~~~G~l~-qveya~~~~~~g~t~igi~~~dgVvla~d~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l 87 (184)
.+|+|++. |||||.+++++|+|+|||+++||||||+|+| +++.+||++|++||+|++||+.+|++.|++.+
T Consensus 7 ~sPe~~~~~qvEYA~~av~~Gtt~vgi~~~dgVVlaaD~r--------s~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~~ 78 (259)
T 1q5q_A 7 ASAEQIMRDRSELARKGIARGRSVVVLTFRDGVLFVAENP--------STALHKVSELYDRLGFAAVGKYNEFENLRRAG 78 (259)
T ss_dssp --CHHHHHHHHHHHHHHHHTSCCEEEEECSSEEEEEECCS--------CSSSCSEEEEETTEEEEEEECHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHhcCCcEEEEEeCCEEEEEEecC--------CCCcCcEEEeCCCEEEEEccCHHHHHHHHHHH
Confidence 47899996 9999999999999999999999999999998 35689999999999999999999999999999
Q ss_pred HHHHHHHHHHhC-CCCcHHHHHHHHHHHH---Hhc-CCCcceeeEEEEEe--C-CCCeEEEEEcCCCcee-ecCeEEEec
Q psy2074 88 SYNLDLQRMELG-EEPLVYSGAKLFQELV---YSY-RDSLTAGIICAGWD--R-KKGGQVYCIPLGGMLM-RQKMAMGGS 158 (184)
Q Consensus 88 ~~~~~~~~~~~~-~~~~~~~la~~l~~~l---~~~-r~p~~~s~llaG~D--~-~~~~~Ly~idp~G~~~-~~~~~a~G~ 158 (184)
+.+++.|++.++ ++|+++.+++.+++++ |.. .+||++++|||||| + +++|+||.+||+|++. ++++.|+|+
T Consensus 79 ~~~~~~~~~~~~~~~i~v~~la~~l~~~l~q~yt~~~rP~~v~~lvaG~D~~~~~~gp~Ly~idp~G~~~~~~~~~aiG~ 158 (259)
T 1q5q_A 79 IVHADMRGYSYDRRDVTGRSLANAYAQTLGTIFTEQPKPYEVEICVAEVGRVGSPKAPQLYRITYDGSIVDEQHFVVMGG 158 (259)
T ss_dssp HHHHHHHHHHSCGGGCCHHHHHHHHHHHHHHHHHHSSSCCCEEEEEEECCCSSCCCCCEEEEEETTSCEEEESSEEEESS
T ss_pred HHHHHHHHHHcCCcCCCHHHHHHHHHHHHHHHhccCCCCceEEEEEEEEcccCCCCCCEEEEECCCCceeeCCCEEEECC
Confidence 999999999987 4999999999999953 433 46999999999999 3 4899999999999999 889999999
Q ss_pred CHHhHHHHHhccCCCCCCHHHHhhc
Q psy2074 159 GSTYLYGHMDNQFKENMTKKEAMST 183 (184)
Q Consensus 159 g~~~~~~~Le~~~~~~~s~eea~~l 183 (184)
+++.++++||+.|+++||+|||+++
T Consensus 159 gs~~a~~~Le~~~~~~ms~eea~~l 183 (259)
T 1q5q_A 159 TTEPIATAMRESYRADLDLEAAVGI 183 (259)
T ss_dssp SHHHHHHHHHHHCCTTCCHHHHHHH
T ss_pred ChHHHHHHHHhhccCCCCHHHHHHH
Confidence 9999999999999999999999986
No 26
>1ryp_N 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_N* 1jd2_M* 1g65_M 1vsy_N 1z7q_N 2f16_M* 2fak_M* 2fny_M* 2gpl_M* 3d29_M* 3dy3_M* 3dy4_M* 3e47_M* 3gpj_M* 3gpt_M* 3gpw_M* 3hye_M* 3l5q_R 3mg0_M* 3mg4_M* ...
Probab=100.00 E-value=5.9e-43 Score=276.40 Aligned_cols=162 Identities=21% Similarity=0.239 Sum_probs=156.3
Q ss_pred cccccCCceEEEEEeCCeEEEEEcCccccCceeeecCCCceEEecCeEEEEecCChHHHHHHHHHHHHHHHHHHH-----
Q psy2074 22 TAKHSCGTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRM----- 96 (184)
Q Consensus 22 ~~~~~~g~t~igi~~~dgVvla~d~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~----- 96 (184)
++++++|+|+|||+++||||||+|+|.+.|.++.+++.+||++|++|++|++||..+|++.+.++++.+++.|++
T Consensus 2 ~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~ 81 (233)
T 1ryp_N 2 QQPIVTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLLKDLVTENAYDNPLA 81 (233)
T ss_dssp CCCCEEECCEEEEEETTEEEEEEECCEEETTEEEESCCCCEEEETTTEEEEEEEEHHHHHHHHHHHHHHHHHHHTTCTTT
T ss_pred cccccCCceEEEEEECCEEEEEEcCccccCCeeecCCcCceEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHhhccchh
Confidence 678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCcHHHHHHHHHHHHHhcC---CCcceeeEEEEEeCCCCeEEEEEcCCCceeecCeEEEecCHHhHHHHHhccCCC
Q psy2074 97 ELGEEPLVYSGAKLFQELVYSYR---DSLTAGIICAGWDRKKGGQVYCIPLGGMLMRQKMAMGGSGSTYLYGHMDNQFKE 173 (184)
Q Consensus 97 ~~~~~~~~~~la~~l~~~l~~~r---~p~~~s~llaG~D~~~~~~Ly~idp~G~~~~~~~~a~G~g~~~~~~~Le~~~~~ 173 (184)
.++++++++.+++++++++|.+| +||++++||||||++++|+||.+||+|++.++++.|+|+|+++++++||+.|++
T Consensus 82 ~~~~~~~v~~la~~l~~~ly~~r~~~~P~~v~~lvaG~D~~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~~ 161 (233)
T 1ryp_N 82 DAEEALEPSYIFEYLATVMYQRRSKMNPLWNAIIVAGVQSNGDQFLRYVNLLGVTYSSPTLATGFGAHMANPLLRKVVDR 161 (233)
T ss_dssp TTTTSCCHHHHHHHHHHHHHHHHHTTCCCCEEEEEEEECTTSCEEEEEEETTCCEECCSEEECTHHHHHHHHHHTTTCSS
T ss_pred hcCCCCCHHHHHHHHHHHHHHhcCCCCCceEEEEEEEEcCCCCEEEEEECCCcCeEEcCEEEECcCHHHHHHHHHHhhcc
Confidence 89999999999999999998875 599999999999986699999999999999999999999999999999999999
Q ss_pred -----CCCHHHHhhc
Q psy2074 174 -----NMTKKEAMST 183 (184)
Q Consensus 174 -----~~s~eea~~l 183 (184)
+||+|||+++
T Consensus 162 ~~~~~~ms~eea~~l 176 (233)
T 1ryp_N 162 ESDIPKTTVQVAEEA 176 (233)
T ss_dssp GGGGGGCCHHHHHHH
T ss_pred ccccCCCCHHHHHHH
Confidence 9999999886
No 27
>1iru_H 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_N* 3une_N
Probab=100.00 E-value=2.6e-42 Score=267.75 Aligned_cols=155 Identities=60% Similarity=1.090 Sum_probs=151.3
Q ss_pred ceEEEEEeCCeEEEEEcCccccCceeeecCCCceEEecCeEEEEecCChHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHH
Q psy2074 29 TTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGA 108 (184)
Q Consensus 29 ~t~igi~~~dgVvla~d~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~~~~la 108 (184)
||+|||+++||||||+|+|.++|.++.+++.+||++|++|+++++||+.+|++.+.++++.+++.|++.++++++++.++
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (205)
T 1iru_H 1 TTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAA 80 (205)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred CcEEEEEeCCEEEEEEcCCcccCcEEecCCcCceEEcCCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 68999999999999999999999888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCcceeeEEEEEeCCCCeEEEEEcCCCceeecCeEEEecCHHhHHHHHhccCCCCCCHHHHhhc
Q psy2074 109 KLFQELVYSYRDSLTAGIICAGWDRKKGGQVYCIPLGGMLMRQKMAMGGSGSTYLYGHMDNQFKENMTKKEAMST 183 (184)
Q Consensus 109 ~~l~~~l~~~r~p~~~s~llaG~D~~~~~~Ly~idp~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~eea~~l 183 (184)
+.+++++|.+|+||++++|+||||++++|+||.+||+|++.+++++++|+|+++++++||+.|+++||+|||+++
T Consensus 81 ~~l~~~~~~~~~p~~~~~lvaG~D~~~gp~ly~~d~~G~~~~~~~~a~Gsgs~~a~~~Le~~~~~~~s~eea~~l 155 (205)
T 1iru_H 81 SLFKEMCYRYREDLMAGIIIAGWDPQEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYREGMTKEECLQF 155 (205)
T ss_dssp HHHHHHHHHTTTTCCEEEEEEEEETTTEEEEEEECTTSCCEECSEEEESGGGGGGHHHHHHHCCTTCCHHHHHHH
T ss_pred HHHHHHHHhcCcCccEEEEEEEEeCCCCCEEEEECCCCcEEecCEEEECCCHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 999999999999999999999999877999999999999999999999999999999999999999999999986
No 28
>1ryp_M 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_M* 1jd2_L* 1g65_L 1vsy_M 1z7q_M 2f16_L* 2fak_L* 2fny_L* 2gpl_L* 3d29_L* 3dy3_L* 3dy4_L* 3e47_L* 3gpj_L* 3gpt_L* 3gpw_L* 3hye_L* 3l5q_Q 3mg0_L* 3mg4_L* ...
Probab=100.00 E-value=4.4e-42 Score=269.63 Aligned_cols=160 Identities=24% Similarity=0.307 Sum_probs=153.5
Q ss_pred cccCCceEEEEEeCCeEEEEEcCccccCceeeecCCCceEEecCeEEEEecCChHHHHHHHHHHHHHHHHHHHHhC-CCC
Q psy2074 24 KHSCGTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELG-EEP 102 (184)
Q Consensus 24 ~~~~g~t~igi~~~dgVvla~d~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~-~~~ 102 (184)
.+++|+|+|||+++||||||+|+|.+.|.++.+++.+||++|++++++++||+.+|++.++++++.+++.|+++++ +++
T Consensus 5 ~v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~ 84 (222)
T 1ryp_M 5 YGDNGGTILGIAGEDFAVLAGDTRNITDYSINSRYEPKVFDCGDNIVMSANGFAADGDALVKRFKNSVKWYHFDHNDKKL 84 (222)
T ss_dssp CCCCCCEEEEEECSSCEEEEEECCEEETTEEEESCCCCCEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHTTTCCC
T ss_pred cccCCccEEEEEeCCEEEEEEecccccCCEecCCCcCcEEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 4678999999999999999999999999988899999999999999999999999999999999999999999999 999
Q ss_pred cHHHHHHHHHHHHHhcC-CCcceeeEEEEEeCCCCeEEEEEcCCCceeecCeEEEecCHHhHHHHHhcc-----------
Q psy2074 103 LVYSGAKLFQELVYSYR-DSLTAGIICAGWDRKKGGQVYCIPLGGMLMRQKMAMGGSGSTYLYGHMDNQ----------- 170 (184)
Q Consensus 103 ~~~~la~~l~~~l~~~r-~p~~~s~llaG~D~~~~~~Ly~idp~G~~~~~~~~a~G~g~~~~~~~Le~~----------- 170 (184)
+++.+|+++++++|.+| +||++++||||||++++|+||.+||.|++.++++.|+|+++++++++||+.
T Consensus 85 ~v~~la~~l~~~ly~~r~~P~~v~~ivaG~D~~g~p~Ly~~dp~G~~~~~~~~a~Gsg~~~a~~~Le~~~~~~~~~~~~~ 164 (222)
T 1ryp_M 85 SINSAARNIQHLLYGKRFFPYYVHTIIAGLDEDGKGAVYSFDPVGSYEREQCRAGGAAASLIMPFLDNQVNFKNQYEPGT 164 (222)
T ss_dssp CHHHHHHHHHHHHHTTTTSCCCEEEEEEEECTTSCEEEEEECTTSCEEEESEEEEETTHHHHHHHHHHHTSCTTCBCTTS
T ss_pred CHHHHHHHHHHHHHhcCCCCceEEEEEEEEcCCCCeEEEEECCCcCEEecCEEEEcCcHHHHHHHHhccccccccccccc
Confidence 99999999999999876 499999999999986779999999999999999999999999999999998
Q ss_pred ------CCCCCCHHHHhhc
Q psy2074 171 ------FKENMTKKEAMST 183 (184)
Q Consensus 171 ------~~~~~s~eea~~l 183 (184)
|+++||+|||+++
T Consensus 165 ~~~~~~~~~~~s~eeA~~l 183 (222)
T 1ryp_M 165 NGKVKKPLKYLSVEEVIKL 183 (222)
T ss_dssp TTCSBCCCCCCCHHHHHHH
T ss_pred ccccccCCCCCCHHHHHHH
Confidence 8899999999986
No 29
>1iru_N 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_M* 3une_M 3unf_M* 3unh_M
Probab=100.00 E-value=8.7e-43 Score=273.00 Aligned_cols=161 Identities=20% Similarity=0.256 Sum_probs=155.3
Q ss_pred cccccCCceEEEEEeCCeEEEEEcCccccCceeeecCCCceEEecCeEEEEecCChHHHHHHHHHHHHHHHHHHH-HhCC
Q psy2074 22 TAKHSCGTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRM-ELGE 100 (184)
Q Consensus 22 ~~~~~~g~t~igi~~~dgVvla~d~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~-~~~~ 100 (184)
++++++|+|+|||+++||||||+|+|.+.|.++.+++.+||++|++|+++++||..+|++.+.++++.+++.|++ .+++
T Consensus 2 ~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~ 81 (219)
T 1iru_N 2 QNPMVTGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADFQYLKQVLGQMVIDEELLGDGH 81 (219)
T ss_dssp CSCCSEECCCEEEEETTEEEEEEECCEEETTEEEECSCCCEEEETTTEEEEEEEEHHHHHHHHHHHHHHHHHHHHHCSSC
T ss_pred CCCccCCceEEEEEeCCEEEEEECCccccCcEEecCCCCceEEeCCCEEEEeccCHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 578999999999999999999999999999999999999999999999999999999999999999999999998 8999
Q ss_pred CCcHHHHHHHHHHHHHhcC---CCcceeeEEEEEeCCCCeEEEEEcCCCceeecCeEEEecCHHhHHHHHhccCCC--CC
Q psy2074 101 EPLVYSGAKLFQELVYSYR---DSLTAGIICAGWDRKKGGQVYCIPLGGMLMRQKMAMGGSGSTYLYGHMDNQFKE--NM 175 (184)
Q Consensus 101 ~~~~~~la~~l~~~l~~~r---~p~~~s~llaG~D~~~~~~Ly~idp~G~~~~~~~~a~G~g~~~~~~~Le~~~~~--~~ 175 (184)
+++++.+++++++++|.+| +||++++||||||+ ++|+||.+||+|++.++++.|+|+|+++++++||+.|++ +|
T Consensus 82 ~~~v~~la~~l~~~ly~~r~~~~P~~v~~lvaG~D~-~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~~m 160 (219)
T 1iru_N 82 SYSPRAIHSWLTRAMYSRRSKMNPLWNTMVIGGYAD-GESFLGYVDMLGVAYEAPSLATGYGAYLAQPLLREVLEKQPVL 160 (219)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTCCCCEEEEEEEEET-TEEEEEEECSSCCEEECSEEECTTHHHHTHHHHHHHHTSCSCC
T ss_pred CCCHHHHHHHHHHHHHHhcccCCCceEEEEEEEEEC-CCCEEEEECCCCCeEECCeEEECccHHHHHHHHHhhcCCCCCC
Confidence 9999999999999998764 59999999999998 699999999999999999999999999999999999999 99
Q ss_pred CHHHHhhc
Q psy2074 176 TKKEAMST 183 (184)
Q Consensus 176 s~eea~~l 183 (184)
|+|||+++
T Consensus 161 t~eea~~l 168 (219)
T 1iru_N 161 SQTEARDL 168 (219)
T ss_dssp CHHHHHHH
T ss_pred CHHHHHHH
Confidence 99999986
No 30
>1j2q_H Proteasome beta subunit; ubiquitin, CP, hydrolase; HET: CIB; 2.83A {Archaeoglobus fulgidus} SCOP: d.153.1.4
Probab=100.00 E-value=7.4e-42 Score=264.60 Aligned_cols=154 Identities=26% Similarity=0.458 Sum_probs=149.6
Q ss_pred ceEEEEEeCCeEEEEEcCccccCceeeecCCCceEEecCeEEEEecCChHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHH
Q psy2074 29 TTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGA 108 (184)
Q Consensus 29 ~t~igi~~~dgVvla~d~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~~~~la 108 (184)
||+|||+++||||||+|+|.++|.++.+++.+||++|++|+++++||+.+|++.++++++.+++.|+++++++|+++.++
T Consensus 1 tt~vgi~~~dgVvlaad~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~a 80 (202)
T 1j2q_H 1 TTTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTTAGSVGDAQFLARIIKIEANLYEIRRERKPTVRAIA 80 (202)
T ss_dssp CCEEEEEETTEEEEEEECCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CcEEEEEeCCEEEEEECCCcCcCCEEeeccccCEEEcCCCEEEEecccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcC-CCcceeeEEEEEeCCCCeEEEEEcCCCceeecC-eEEEecCHHhHHHHHhccCCCCCCHHHHhhc
Q psy2074 109 KLFQELVYSYR-DSLTAGIICAGWDRKKGGQVYCIPLGGMLMRQK-MAMGGSGSTYLYGHMDNQFKENMTKKEAMST 183 (184)
Q Consensus 109 ~~l~~~l~~~r-~p~~~s~llaG~D~~~~~~Ly~idp~G~~~~~~-~~a~G~g~~~~~~~Le~~~~~~~s~eea~~l 183 (184)
+.+++++|.+| +||++++||||||+ +||+||.+||+|++.+++ +.|+|+|+++++++||+.|+++||+|||+++
T Consensus 81 ~~l~~~~~~~r~rp~~~~~lvaG~D~-~gp~Ly~id~~G~~~~~~~~~aiG~g~~~a~~~Le~~~~~~~s~eea~~l 156 (202)
T 1j2q_H 81 TLTSNLLNSYRYFPYLVQLLIGGIDS-EGKSIYSIDPIGGAIEEKDIVATGSGSLTAYGVLEDRFTPEIGVDEAVEL 156 (202)
T ss_dssp HHHHHHHHHTTTSCCCEEEEEEEEET-TEEEEEEECTTCCEEEESSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHH
T ss_pred HHHHHHHHhhCCCCceEEEEEEEEeC-CCCEEEEECCCCCeeecCCEEEEcCCHHHHHHHHHhhcCCCcCHHHHHHH
Confidence 99999999876 49999999999998 789999999999999999 9999999999999999999999999999986
No 31
>1ryp_L 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_L 1vsy_L 1z7q_L 3l5q_P 1g65_K* 1g0u_K* 1jd2_K* 2f16_K* 2fak_K* 2fny_K* 2gpl_K* 2zcy_K* 3bdm_K* 3d29_K* 3dy3_K* 3dy4_K* 3e47_K* 3gpj_K* 3gpt_K* 3gpw_K* ...
Probab=100.00 E-value=7.7e-42 Score=266.39 Aligned_cols=155 Identities=27% Similarity=0.541 Sum_probs=150.7
Q ss_pred ceEEEEEeCCeEEEEEcCccccCceeeecCCCceEEecCeEEEEecCChHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHH
Q psy2074 29 TTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGA 108 (184)
Q Consensus 29 ~t~igi~~~dgVvla~d~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~~~~la 108 (184)
||+|||+++||||||+|+|.++|.++.+++.+||++|++|+++++||..+|++.+.++++.+++.|+++++++++++.++
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (212)
T 1ryp_L 1 TTTLAFRFQGGIIVAVDSRATAGNWVASQTVKRVIEINPFLLGTMAGGAADCQFWETWLGSQCRLHELREKERISVAAAS 80 (212)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECCBCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CcEEEEEeCCEEEEEEcCCcccCCeEecCcccceeeeCCcEEEEccccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCC-CcceeeEEEEEeCCCCeEEEEEcCCCceeecCeEEEecCHHhHHHHHhccCCCCCCHHHHhhc
Q psy2074 109 KLFQELVYSYRD-SLTAGIICAGWDRKKGGQVYCIPLGGMLMRQKMAMGGSGSTYLYGHMDNQFKENMTKKEAMST 183 (184)
Q Consensus 109 ~~l~~~l~~~r~-p~~~s~llaG~D~~~~~~Ly~idp~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~eea~~l 183 (184)
+++++++|.+|+ ||++++||||||++++|+||.+||+|++.++++.|+|+|+++++++||+.|+++||+|||+++
T Consensus 81 ~~l~~~~~~~~~~p~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~s~eea~~l 156 (212)
T 1ryp_L 81 KILSNLVYQYKGAGLSMGTMICGYTRKEGPTIYYVDSDGTRLKGDIFCVGSGQTFAYGVLDSNYKWDLSVEDALYL 156 (212)
T ss_dssp HHHHHHHHHTTTSCCCBEEEEEEEETTTEEEEEEEETTCCEEECSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHH
T ss_pred HHHHHHHHhhCCCCceEEEEEEEEeCCCCCEEEEEcCCceeEecCCEEEcCCHHHHHHHHHhhCCCCCCHHHHHHH
Confidence 999999999886 999999999999657999999999999999999999999999999999999999999999986
No 32
>1ryp_K 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_K 1g0u_J* 1jd2_J* 1g65_J 1vsy_K 1z7q_K 2f16_J* 2fak_J* 2fny_J* 2gpl_J* 2zcy_J* 3bdm_J* 3d29_J* 3dy3_J* 3dy4_J* 3e47_J* 3gpj_J* 3gpt_J* 3gpw_J* 3hye_J* ...
Probab=100.00 E-value=3.1e-42 Score=265.87 Aligned_cols=156 Identities=16% Similarity=0.302 Sum_probs=150.1
Q ss_pred CceEEEEEeCCeEEEEEcCccccCceeeecCCCceEEecCeEEEEecCChHHHHHHHHHHHHHHHHHHHHhCCCCcHHHH
Q psy2074 28 GTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSG 107 (184)
Q Consensus 28 g~t~igi~~~dgVvla~d~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~~~~l 107 (184)
++|+|||+++||||||+|+|.++|.++.+++.+||++|++|+++++||+.+|++.++++++.+++.|+++++++++++.+
T Consensus 1 Mtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~l 80 (198)
T 1ryp_K 1 MDIILGIRVQDSVILASSKAVTRGISVLKDSDDKTRQLSPHTLMSFAGEAGDTVQFAEYIQANIQLYSIREDYELSPQAV 80 (198)
T ss_dssp CCCEEEEECSSCEEEEEECCEEETTEEEESCCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHH
T ss_pred CceEEEEEECCEEEEEECCCcccCCEEEecCCCceEEeCCCEEEEeccCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 58999999999999999999999988888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcC---CCcceeeEEEEEeC-CCCeEEEEEcCCCceeecCeEEEecCHHhHHHHHhccCCCCCCHHHHhhc
Q psy2074 108 AKLFQELVYSYR---DSLTAGIICAGWDR-KKGGQVYCIPLGGMLMRQKMAMGGSGSTYLYGHMDNQFKENMTKKEAMST 183 (184)
Q Consensus 108 a~~l~~~l~~~r---~p~~~s~llaG~D~-~~~~~Ly~idp~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~eea~~l 183 (184)
++.+++.+|+++ +||++++||||||+ +++|+||.+||+|++.++++.|+|+|+++++++||+.|+++||+|||+++
T Consensus 81 a~~l~~~l~~~~~~r~p~~v~~lvaG~D~~~~~p~Ly~idp~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~s~eea~~l 160 (198)
T 1ryp_K 81 SSFVRQELAKSIRSRRPYQVNVLIGGYDKKKNKPELYQIDYLGTKVELPYGAHGYSGFYTFSLLDHHYRPDMTTEEGLDL 160 (198)
T ss_dssp HHHHHHHHHHHTTSSSCCCEEEEEEEEETTTTEEEEEEECTTCCEEECSEEECTTHHHHHHHHHHHHCCTTCCHHHHHHH
T ss_pred HHHHHHHHHHhcccCCCceEEEEEEEEeCCCCCcEEEEECCCCCEEECCEEEEcccHHHHHHHHHhhcCCCCCHHHHHHH
Confidence 999999998864 49999999999997 58999999999999999999999999999999999999999999999986
No 33
>3mi0_A Proteasome subunit alpha; enzyme inhibitors, lactones, proteasome endopeptidase comple mycobacterium tuberculosis, hydrolase; HET: SA6; 2.20A {Mycobacterium tuberculosis} SCOP: d.153.1.4 PDB: 3h6f_A 3krd_A* 3h6i_A* 3mka_A 2fhh_A* 2fhg_A 3hfa_D 3hf9_A 3mfe_D
Probab=100.00 E-value=1.6e-42 Score=275.95 Aligned_cols=159 Identities=13% Similarity=0.183 Sum_probs=148.2
Q ss_pred CCccccccccCCceEEEEEeCCeEEEEEcCccccCceeeecCCCceEEecCeEEEEecCChHHHHHHHHHHHHHHHHHHH
Q psy2074 17 APDWLTAKHSCGTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRM 96 (184)
Q Consensus 17 qveya~~~~~~g~t~igi~~~dgVvla~d~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~ 96 (184)
++|||.+|+++|+|+|||+++||||||+|+| +++.+||++|++||+|+++|+.+|++.|++.++..++.|++
T Consensus 16 r~EYA~~av~~GtT~vgi~~kdgVVlaadkr--------~~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~~~~~~~l~~~ 87 (248)
T 3mi0_A 16 RSELARKGIARAKSVVALAYAGGVLFVAENP--------SRSLQKISELYDRVGFAAAGKFNEFDNLRRGGIQFADTRGY 87 (248)
T ss_dssp HHHHHHHHHHTSCCEEEEEETTEEEEEEECC--------CSSSCSEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHhCCCcEEEEEeCCEEEEEEeCC--------CCCCCCeEEECCCEEEEEccCHHHHHHHHHHHHHHHHHHHH
Confidence 4799999999999999999999999999999 34689999999999999999999999999999999999999
Q ss_pred HhC-CCCcHHHHHHHHHHH-HHh---cCCCcceeeEEEEEeC---CCCeEEEEEcCCCceee-cCeEEEecCHHhHHHHH
Q psy2074 97 ELG-EEPLVYSGAKLFQEL-VYS---YRDSLTAGIICAGWDR---KKGGQVYCIPLGGMLMR-QKMAMGGSGSTYLYGHM 167 (184)
Q Consensus 97 ~~~-~~~~~~~la~~l~~~-l~~---~r~p~~~s~llaG~D~---~~~~~Ly~idp~G~~~~-~~~~a~G~g~~~~~~~L 167 (184)
.++ .+++++.+++.+++. .+. ..+||+|++||||||+ ++||+||++||+|++.+ +++.|+|++++.++++|
T Consensus 88 ~~~~~~i~v~~la~~l~~~l~q~yt~~~rP~gv~~liaG~D~~~~~~gp~Ly~~Dp~G~~~~e~~~~a~Gsgs~~a~~~L 167 (248)
T 3mi0_A 88 AYDRRDVTGRQLANVYAQTLGTIFTEQAKPYEVELCVAEVAHYGETKRPELYRITYDGSIADEPHFVVMGGTTEPIANAL 167 (248)
T ss_dssp HSCGGGCCHHHHHHHHHHHHHHHHHHSSSCCCEEEEEEECCCTTCCCCCEEEEECTTSCEEEESSEEEESSCHHHHHHHH
T ss_pred hcCCCCCCHHHHHHHHHHHHHHHhccCCCCceEEEEEEEEcCCCCCCCCEEEEECCCeEEeecccEEEECccHHHHHHHH
Confidence 999 899999999999954 332 3569999999999997 47999999999999995 99999999999999999
Q ss_pred hccCCCCCCHHHHhhc
Q psy2074 168 DNQFKENMTKKEAMST 183 (184)
Q Consensus 168 e~~~~~~~s~eea~~l 183 (184)
|+.|+++||+|||+++
T Consensus 168 e~~y~~~mt~eeai~l 183 (248)
T 3mi0_A 168 KESYAENASLTDALRI 183 (248)
T ss_dssp HHHCCTTCCHHHHHHH
T ss_pred HhhcCCCCCHHHHHHH
Confidence 9999999999999986
No 34
>3unf_H Proteasome subunit beta type-10; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_H
Probab=100.00 E-value=8.1e-42 Score=269.98 Aligned_cols=154 Identities=29% Similarity=0.545 Sum_probs=150.6
Q ss_pred ceEEEEEeCCeEEEEEcCccccCceeeecCCCceEEecCeEEEEecCChHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHH
Q psy2074 29 TTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGA 108 (184)
Q Consensus 29 ~t~igi~~~dgVvla~d~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~~~~la 108 (184)
||+|||+++||||||+|+|.++|.++.+++.+||++|++|++|++||..+|++.+.++++.++++|++.++++++++.++
T Consensus 1 TT~vgi~~kdgVVlaaD~r~t~g~~v~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (234)
T 3unf_H 1 TTIAGLVFRDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADTEMTTRMAASKMELHALSTGREPRVATVT 80 (234)
T ss_dssp CEEEEEECSSEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHCSCCCHHHHH
T ss_pred CeEEEEEeCCEEEEEECCCcccCCEeccCccccEEEecCCEEEEecccHHHHHHHHHHHHHHHHhhHHhcCCCCCHHHHH
Confidence 69999999999999999999999988889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCcceeeEEEEEeCCCCeEEEEEcCCCceeecCeEEEecCHHhHHHHHhccCCCCCCHHHHhhc
Q psy2074 109 KLFQELVYSYRDSLTAGIICAGWDRKKGGQVYCIPLGGMLMRQKMAMGGSGSTYLYGHMDNQFKENMTKKEAMST 183 (184)
Q Consensus 109 ~~l~~~l~~~r~p~~~s~llaG~D~~~~~~Ly~idp~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~eea~~l 183 (184)
+++++++|.+++|+++++||||||+ +||+||.+||+|++.++++.|+|+|+++++++||+.|+++||+|||+++
T Consensus 81 ~~l~~~l~~~~~p~~v~llvaG~D~-~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eeA~~l 154 (234)
T 3unf_H 81 RILRQTLFRYQGHVGASLVVGGVDL-NGPQLYEVHPHGSYSRLPFTALGSGQGAAVALLEDRFQPNMTLEAAQEL 154 (234)
T ss_dssp HHHHHHHHHTTTCSCEEEEEEEEET-TEEEEEEECTTSCEEECSEEEEETTHHHHHHHHHHHCCSSCCHHHHHHH
T ss_pred HHHHHHHHhcCCCccEEEEEEEEeC-CCCEEEEECCCCCEEeccEEEEcCCchhhHHHHHhccCCCCCHHHHHHH
Confidence 9999999999999999999999998 7899999999999999999999999999999999999999999999986
No 35
>1iru_J 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_I* 3une_I 3unf_I* 3unh_I
Probab=100.00 E-value=1.1e-41 Score=264.24 Aligned_cols=159 Identities=21% Similarity=0.310 Sum_probs=150.9
Q ss_pred ccCCceEEEEEeCCeEEEEEcCccccCceeeecCCCceEEecCeEEEEecCChHHHHHHHHHHHHHHHHHHHHhCCCCcH
Q psy2074 25 HSCGTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLV 104 (184)
Q Consensus 25 ~~~g~t~igi~~~dgVvla~d~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~~ 104 (184)
+.+|+|+|||+++||||||+|+|.+.|.++.+++.+||++|++|+++++||..+|++.+.++++.+++.|++.+++++++
T Consensus 5 ~~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v 84 (205)
T 1iru_J 5 SYNGGAVMAMKGKNCVAIAADRRFGIQAQLVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQRLKFRLNLYELKEGRQIKP 84 (205)
T ss_dssp TSSCCEEEEEECSSEEEEEEECCEEETTEEEESCCCCEEECSTTEEEECCSCHHHHHHHHHHHHHHHHHHHHHSSSCCCH
T ss_pred cCCCCeEEEEEeCCEEEEEECCccccCCeEeecCCccEEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHHhhcCCCCCH
Confidence 46899999999999999999999999998888899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCC-CcceeeEEEEEeC-CCCeEEEEEcCCCceee-cCeEEEecCHHhHHHHHhccCCCCCCHHHHh
Q psy2074 105 YSGAKLFQELVYSYRD-SLTAGIICAGWDR-KKGGQVYCIPLGGMLMR-QKMAMGGSGSTYLYGHMDNQFKENMTKKEAM 181 (184)
Q Consensus 105 ~~la~~l~~~l~~~r~-p~~~s~llaG~D~-~~~~~Ly~idp~G~~~~-~~~~a~G~g~~~~~~~Le~~~~~~~s~eea~ 181 (184)
+.+++.+++++|.+|. ||++++||||||+ +++|+||.+||+|++.+ .+|.|+|+|+++++++||+.|+++||+|||+
T Consensus 85 ~~la~~l~~~~y~~r~~P~~v~~lvaG~D~~~~~p~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~~~~s~eea~ 164 (205)
T 1iru_J 85 YTLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPFICSLDLIGCPMVTDDFVVSGTCAEQMYGMCESLWEPNMDPDHLF 164 (205)
T ss_dssp HHHHHHHHHHHHTTTTSCCSCCCEEEEECTTSCCEEEEEECTTCCEEECSSEEEEETTHHHHHHHHHHHCCSSCCHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCceEEEEEEEEeCCCCCeEEEEECCCCCccccCCeeEeeeCHHHHHHHHhcccCCCCCHHHHH
Confidence 9999999999988764 9999999999996 57999999999999855 5779999999999999999999999999999
Q ss_pred hc
Q psy2074 182 ST 183 (184)
Q Consensus 182 ~l 183 (184)
++
T Consensus 165 ~l 166 (205)
T 1iru_J 165 ET 166 (205)
T ss_dssp HH
T ss_pred HH
Confidence 86
No 36
>1iru_L 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_K* 3une_K 3unf_K* 3unh_K
Probab=100.00 E-value=1.5e-41 Score=263.21 Aligned_cols=154 Identities=29% Similarity=0.522 Sum_probs=150.0
Q ss_pred ceEEEEEeCCeEEEEEcCccccCceeeecCCCceEEecCeEEEEecCChHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHH
Q psy2074 29 TTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGA 108 (184)
Q Consensus 29 ~t~igi~~~dgVvla~d~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~~~~la 108 (184)
||+|||+++||||||+|+|.++|.++.+++.+||++|++|+++++||+.+|++.+.+.++.+++.|++.++++++++.++
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (204)
T 1iru_L 1 TTTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLARQCRIYELRNKERISVAAAS 80 (204)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECCBCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CeEEEEEeCCEEEEEEcCCcccCCEEEcCcccceEEcCCCEEEEccCcHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCC-CcceeeEEEEEeCCCCeEEEEEcCCCceeecCeEEEecCHHhHHHHHhccCCCCCCHHHHhhc
Q psy2074 109 KLFQELVYSYRD-SLTAGIICAGWDRKKGGQVYCIPLGGMLMRQKMAMGGSGSTYLYGHMDNQFKENMTKKEAMST 183 (184)
Q Consensus 109 ~~l~~~l~~~r~-p~~~s~llaG~D~~~~~~Ly~idp~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~eea~~l 183 (184)
+.+++++|.+|. |+++++||||||+ +||+||.+||+|++.++++.|+|+|+++++++||+.|+++||+|||+++
T Consensus 81 ~~l~~~~~~~r~~~~~v~~lvaG~D~-~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~~s~eea~~l 155 (204)
T 1iru_L 81 KLLANMVYQYKGMGLSMGTMICGWDK-RGPGLYYVDSEGNRISGATFSVGSGSVYAYGVMDRGYSYDLEVEQAYDL 155 (204)
T ss_dssp HHHHHHHHTTTTSCCCBEEEEEEECS-SSEEEEEEESSSCEEECSEEEESTTHHHHHHHHHTTCCTTCCHHHHHHH
T ss_pred HHHHHHHHHhCCCCeeEEEEEEEEeC-CCCEEEEECCCCcEEEeCCEEEEcCHHHHHHHHhccCCCCCCHHHHHHH
Confidence 999999999876 9999999999998 7999999999999999999999999999999999999999999999986
No 37
>1g0u_M Proteasome component PRE4; ubiquitin, degradation, protease, NTN-hydrolase; 2.40A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 2zcy_M* 3bdm_M* 3mg6_M* 3mg7_M* 3mg8_M* 3nzj_M* 3nzw_M* 3nzx_M*
Probab=100.00 E-value=3.4e-42 Score=276.90 Aligned_cols=166 Identities=20% Similarity=0.213 Sum_probs=157.6
Q ss_pred CccccccccCCceEEEEEeCCeEEEEEcCccccCceeeecCCCceEEecCeEEEEecCChHHHHHHHHHHHHHHHHHHH-
Q psy2074 18 PDWLTAKHSCGTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRM- 96 (184)
Q Consensus 18 veya~~~~~~g~t~igi~~~dgVvla~d~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~- 96 (184)
.+.+.+++++|+|+|||+++||||||+|+|.+.|.++.+++.+||++|++|++|++||+.+|++.|+++++.+++.|++
T Consensus 31 ~~~~~~av~~GtT~vgi~~~dgVVlAaD~r~t~g~~i~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~lr~~~~~~~~~ 110 (266)
T 1g0u_M 31 MVNTQQPIVTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLLKDLVTENAYD 110 (266)
T ss_dssp ---CCCCCEEECCEEEEEETTEEEEEEECCEEETTEEEECCCCCEEECTTSEEEEEEEEHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhhhccCcccCceEEEEEECCEEEEEEcCCcccCceeecCCcCcEEEcCCCEEEEeccCHHHHHHHHHHHHHHHHHhhhc
Confidence 5778899999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ----HhCCCCcHHHHHHHHHHHHHhcC---CCcceeeEEEEEeCCCCeEEEEEcCCCceeecCeEEEecCHHhHHHHHhc
Q psy2074 97 ----ELGEEPLVYSGAKLFQELVYSYR---DSLTAGIICAGWDRKKGGQVYCIPLGGMLMRQKMAMGGSGSTYLYGHMDN 169 (184)
Q Consensus 97 ----~~~~~~~~~~la~~l~~~l~~~r---~p~~~s~llaG~D~~~~~~Ly~idp~G~~~~~~~~a~G~g~~~~~~~Le~ 169 (184)
.++++++++.+++++++++|.+| +||++++||||||++++|+||.+||+|++.++++.|+|+|+++++++||+
T Consensus 111 ~~~~~~~~~~~v~~la~~l~~~ly~~r~~~~P~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~ 190 (266)
T 1g0u_M 111 NPLADAEEALEPSYIFEYLATVMYQRRSKMNPLWNAIIVAGVQSNGDQFLRYVNLLGVTYSSPTLATGFGAHMANPLLRK 190 (266)
T ss_dssp CTTTTTTTSCCHHHHHHHHHHHHHHHHHTTCCCCEEEEEEEECTTSCEEEEEEETTCCEECCSEEECTHHHHTHHHHHTT
T ss_pred cchhhcCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEEEEcCCCCEEEEEECCCCCEEeCCEEEEccCHHHHHHHHHH
Confidence 89999999999999999998875 59999999999998669999999999999999999999999999999999
Q ss_pred cCCC-----CCCHHHHhhc
Q psy2074 170 QFKE-----NMTKKEAMST 183 (184)
Q Consensus 170 ~~~~-----~~s~eea~~l 183 (184)
.|++ +||+|||+++
T Consensus 191 ~~~~~~~~~~ms~eeA~~l 209 (266)
T 1g0u_M 191 VVDRESDIPKTTVQVAEEA 209 (266)
T ss_dssp TCSSGGGGGGCCHHHHHHH
T ss_pred hhcccccCCCCCHHHHHHH
Confidence 9999 9999999986
No 38
>1ryp_J 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_I* 1g65_I 1vsy_J 2f16_I* 2fak_I* 2fny_I* 2gpl_I* 3d29_I* 3dy3_I* 3dy4_I* 3e47_I* 3gpj_I* 3gpt_I* 3gpw_I* 3hye_I* 3l5q_N 3mg0_I* 3mg4_I* 3oeu_I* 3oev_I* ...
Probab=100.00 E-value=3.4e-41 Score=261.26 Aligned_cols=158 Identities=16% Similarity=0.255 Sum_probs=150.2
Q ss_pred ccCCceEEEEEeCCeEEEEEcCccccCceeeecCCCceEEecCeEEEEecCChHHHHHHHHHHHHHHHHHHHHhCCCCcH
Q psy2074 25 HSCGTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLV 104 (184)
Q Consensus 25 ~~~g~t~igi~~~dgVvla~d~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~~ 104 (184)
+.+|+|+|||+++||||||+|+|.+.|.++.+++.+||++|+ |+++++||+.+|++.++++++.+++.|++++++++++
T Consensus 5 ~~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~-~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v 83 (204)
T 1ryp_J 5 SINGGIVVAMTGKDCVAIACDLRLGSQSLGVSNKFEKIFHYG-HVFLGITGLATDVTTLNEMFRYKTNLYKLKEERAIEP 83 (204)
T ss_dssp GSSCCEEEEEECSSEEEEEEECCEEETTEEEESCCCCEEEET-TEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred CCCCCeEEEEEeCCEEEEEEcCCcccCCEEeeCCcceEEEeC-CEEEEeeEcHHHHHHHHHHHHHHHHHHhhccCCCCCH
Confidence 578999999999999999999999999988888999999999 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCC-CcceeeEEEEEeC-CCCeEEEEEcCCCceee-cCeEEEecCHHhHHHHHhccCCCCCCHHHHh
Q psy2074 105 YSGAKLFQELVYSYRD-SLTAGIICAGWDR-KKGGQVYCIPLGGMLMR-QKMAMGGSGSTYLYGHMDNQFKENMTKKEAM 181 (184)
Q Consensus 105 ~~la~~l~~~l~~~r~-p~~~s~llaG~D~-~~~~~Ly~idp~G~~~~-~~~~a~G~g~~~~~~~Le~~~~~~~s~eea~ 181 (184)
+.+++.+++++|.+|. ||++++||||||+ +++|+||.+||+|++.+ .+|.|+|+|+++++++||+.|+++||+|||+
T Consensus 84 ~~la~~l~~~~y~~~~~P~~v~~lvaG~D~~~~gp~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~~~~s~eea~ 163 (204)
T 1ryp_J 84 ETFTQLVSSSLYERRFGPYFVGPVVAGINSKSGKPFIAGFDLIGCIDEAKDFIVSGTASDQLFGMCESLYEPNLEPEDLF 163 (204)
T ss_dssp HHHHHHHHHHHHTTTTSCCCEEEEEEEECTTTCCEEEEEECTTCCEECCSSEEEEETTHHHHHHHHHHHCCSSCCHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCceEEEEEEEEeCCCCceEEEEECCCCCccccCceeEeccCHHHHHHHHhhhcCCCcCHHHHH
Confidence 9999999999988764 9999999999996 57999999999999855 5789999999999999999999999999999
Q ss_pred hc
Q psy2074 182 ST 183 (184)
Q Consensus 182 ~l 183 (184)
++
T Consensus 164 ~l 165 (204)
T 1ryp_J 164 ET 165 (204)
T ss_dssp HH
T ss_pred HH
Confidence 86
No 39
>1q5r_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, hydrolase; 3.10A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_H
Probab=100.00 E-value=1.6e-41 Score=275.97 Aligned_cols=163 Identities=18% Similarity=0.257 Sum_probs=155.3
Q ss_pred ccccccCCceEEEEEeCCeEEEEEcCccccCceeeecCCCceEEecCeEEEEecCChHHHHHHHHHHHHHHHHHHHHhCC
Q psy2074 21 LTAKHSCGTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGE 100 (184)
Q Consensus 21 a~~~~~~g~t~igi~~~dgVvla~d~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~ 100 (184)
|.+|+++|+|+|||+++||||||+|+|.++|.++.+++.+||++|+++++|+++|+.+|++.++++++.+++.|++.+++
T Consensus 58 a~~Av~~GtTiVgIk~kdGVVlAaD~r~t~G~li~~~~~~KI~~I~~~i~~~~aG~~aD~~~l~~~~r~~~~~y~~~~g~ 137 (294)
T 1q5r_H 58 SGDLAPHGTTIVALTYKGGVLLAGDRRATQGNLIASRDVEAVYVTDEYSAAGIAGTAGIAIELVRLFAVELEHYEKIEGV 137 (294)
T ss_dssp --CCSCBCCCEEEEECSSCEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHhcCceEEEEEECCEEEEEEcCccccCceeecCCcceEEEECCcEEEEEeecHHHHHHHHHHHHHHHHHhhHhhCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHhcC----CCcceeeEEEEEeCCCC-----eEEEEEcCCCceeec--CeEEEecCHHhHHHHHhc
Q psy2074 101 EPLVYSGAKLFQELVYSYR----DSLTAGIICAGWDRKKG-----GQVYCIPLGGMLMRQ--KMAMGGSGSTYLYGHMDN 169 (184)
Q Consensus 101 ~~~~~~la~~l~~~l~~~r----~p~~~s~llaG~D~~~~-----~~Ly~idp~G~~~~~--~~~a~G~g~~~~~~~Le~ 169 (184)
+++++.+++.+++++|.++ +||++++||||||++++ |+||.+||+|++.++ ++.|+|+|+++++++||+
T Consensus 138 ~isv~~la~~la~~l~~~~~~~~rp~~v~lLvaG~D~~~g~~~~~p~Ly~iDp~G~~~e~~~~~~AiGsgs~~a~~~Le~ 217 (294)
T 1q5r_H 138 PLTFDGKANRLASMVRGNLGAAMQGLAVVPLLVGYDLDADDESRAGRIVSYDVVGGRYEERAGYHAVGSGSLFAKSALKK 217 (294)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHTTTTCEEEEEEEECTTCSCTTSCEEEEEECSSSCEEECCSSEEEESTTHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhhhcCCcceEEEEEEEeCCCCcCCCCCEEEEECCCCeEEecCCCeEEEecCcHHHHHHHHH
Confidence 9999999999999998754 69999999999998656 999999999999998 999999999999999999
Q ss_pred cCCCCCCHHHHhhc
Q psy2074 170 QFKENMTKKEAMST 183 (184)
Q Consensus 170 ~~~~~~s~eea~~l 183 (184)
.|+++||+|||+++
T Consensus 218 ~y~~~ms~eEAi~l 231 (294)
T 1q5r_H 218 IYSPDSDEETALRA 231 (294)
T ss_dssp HCCSSCCHHHHHHH
T ss_pred hccCCCCHHHHHHH
Confidence 99999999999986
No 40
>1ryp_I 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1g0u_H* 1jd2_H* 1g65_H 1vsy_I 1z7q_I 2f16_H* 2fak_H* 2fny_H* 2gpl_H* 3d29_H* 3dy3_H* 3dy4_H* 3e47_H* 3gpj_H* 3gpt_H* 3gpw_H* 3hye_H* 3l5q_M 3mg0_H* 3mg4_H* ...
Probab=100.00 E-value=2.7e-41 Score=265.15 Aligned_cols=154 Identities=33% Similarity=0.574 Sum_probs=150.5
Q ss_pred ceEEEEEeCCeEEEEEcCccccCceeeecCCCceEEecCeEEEEecCChHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHH
Q psy2074 29 TTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGA 108 (184)
Q Consensus 29 ~t~igi~~~dgVvla~d~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~~~~la 108 (184)
||+|||+++||||||+|+|.++|.++.+++.+||++|++|++|++||..+|++.++++++.+++.|+++++++++++.++
T Consensus 1 TT~vgi~~~dgVvlaaD~r~t~g~~~~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a 80 (222)
T 1ryp_I 1 TTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYTSREPRVVSAL 80 (222)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred CeEEEEEECCEEEEEEcCCcccCCeeecCCcccEEEecCCEEEEecccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 68999999999999999999999988889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCcceeeEEEEEeCCCCeEEEEEcCCCceeecCeEEEecCHHhHHHHHhccCCCCCCHHHHhhc
Q psy2074 109 KLFQELVYSYRDSLTAGIICAGWDRKKGGQVYCIPLGGMLMRQKMAMGGSGSTYLYGHMDNQFKENMTKKEAMST 183 (184)
Q Consensus 109 ~~l~~~l~~~r~p~~~s~llaG~D~~~~~~Ly~idp~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~eea~~l 183 (184)
+++++.+|.+++|+++++||||||+ +||+||.+||+|++.++++.|+|+|+++++++||+.|+++||+|||+++
T Consensus 81 ~~l~~~l~~~~~p~~v~~lvaG~D~-~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eeA~~l 154 (222)
T 1ryp_I 81 QMLKQHLFKYQGHIGAYLIVAGVDP-TGSHLFSIHAHGSTDVGYYLSLGSGSLAAMAVLESHWKQDLTKEEAIKL 154 (222)
T ss_dssp HHHHHHHHHTTTCSCEEEEEEEEET-TEEEEEEECTTSCEEECSEEEESTTHHHHHHHHHHHCCSSCCHHHHHHH
T ss_pred HHHHHHHhhcCCCCCeeEEEEEEeC-CCCEEEEECCCCCEEecCEEEECCCHHHHHHHHHhhCCCCcCHHHHHHH
Confidence 9999999999999999999999998 7899999999999999999999999999999999999999999999986
No 41
>2jay_A Proteasome; hydrolase; 1.99A {Mycobacterium tuberculosis} PDB: 3mka_C 3mi0_C* 2fhg_H* 2fhh_H 3krd_C* 3mfe_G 3hfa_H* 3h6i_C 3h6f_C 3hf9_H 3mfe_H
Probab=100.00 E-value=1.2e-41 Score=276.47 Aligned_cols=165 Identities=21% Similarity=0.248 Sum_probs=141.5
Q ss_pred CccccccccCCceEEEEEeCCeEEEEEcCccccCceeeecCCCceEEecCeEEEEecCChHHHHHHHHHHHHHHHHHHHH
Q psy2074 18 PDWLTAKHSCGTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRME 97 (184)
Q Consensus 18 veya~~~~~~g~t~igi~~~dgVvla~d~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~ 97 (184)
+|||.+ +.+|+|+|||+++||||||+|+|.++|.++.+++.+||++|++|++|++||..+|++.++++++.+++.|++.
T Consensus 48 ~~ya~~-v~~GtTiVgi~~kdGVVlAaD~r~t~g~li~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~lr~~~~~y~~~ 126 (291)
T 2jay_A 48 AGGDAQ-LPHGTTIVALKYPGGVVMAGDRRSTQGNMISGRDVRKVYITDDYTATGIAGTAAVAVEFARLYAVELEHYEKL 126 (291)
T ss_dssp -----------CCEEEEEETTEEEEEECCC--------CCCCCCEEEEETTEEEEEESCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccc-ccCCcEEEEEEECCEEEEEECCCccCCCeeecCCcccEEEeCCcEEEEEcccHHHHHHHHHHHHHHHHHhhhh
Confidence 799999 9999999999999999999999999998888899999999999999999999999999999999999999999
Q ss_pred hCCCCcHHHHHHHHHHHHHhcC----CCcceeeEEEEEeCCCC-----eEEEEEcCCCcee--ecCeEEEecCHHhHHHH
Q psy2074 98 LGEEPLVYSGAKLFQELVYSYR----DSLTAGIICAGWDRKKG-----GQVYCIPLGGMLM--RQKMAMGGSGSTYLYGH 166 (184)
Q Consensus 98 ~~~~~~~~~la~~l~~~l~~~r----~p~~~s~llaG~D~~~~-----~~Ly~idp~G~~~--~~~~~a~G~g~~~~~~~ 166 (184)
++.+++++.+++.+++++|.++ +||++++||||||++++ |+||.+||+|++. ++++.|+|+|+++++++
T Consensus 127 ~~~~i~v~~la~~la~~l~~~~~~~~rpf~v~~lvaG~D~~g~~~~~~p~Ly~iDp~G~~~e~~~~~~aiGsgs~~a~~~ 206 (291)
T 2jay_A 127 EGVPLTFAGKINRLAIMVRGNLAAAMQGLLALPLLAGYDIHASDPQSAGRIVSFDAAGGWNIEEEGYQAVGSGSLFAKSS 206 (291)
T ss_dssp HSSCCCHHHHHHHHHHHHHTCHHHHHHTCCCEEEEEEECTTCSCSTTCEEEEEECTTSCEEECSSSEEEESTTHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHhhhhhccccceeEEEEEEeCCCCcCCCCCEEEEECCCCcEEecCCCEEEEecCHHHHHHH
Confidence 9999999999999999999875 39999999999998656 9999999999988 89999999999999999
Q ss_pred HhccCCCCCCHHHHhhc
Q psy2074 167 MDNQFKENMTKKEAMST 183 (184)
Q Consensus 167 Le~~~~~~~s~eea~~l 183 (184)
||+.|+++||+|||+++
T Consensus 207 Le~~~~~~ms~eEAi~l 223 (291)
T 2jay_A 207 MKKLYSQVTDGDSGLRV 223 (291)
T ss_dssp HHHHGGGCCSHHHHHHH
T ss_pred HHHhcCCCCCHHHHHHH
Confidence 99999999999999876
No 42
>1iru_K 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_J* 3une_J 3unf_J* 3unh_J
Probab=100.00 E-value=4.6e-41 Score=259.98 Aligned_cols=156 Identities=18% Similarity=0.297 Sum_probs=148.2
Q ss_pred CceEEEEEeCCeEEEEEcCccccCceeeecCCCceEEecCeEEEEecCChHHHHHHHHHHHHHHHHHHHHhCCCCcHHHH
Q psy2074 28 GTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSG 107 (184)
Q Consensus 28 g~t~igi~~~dgVvla~d~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~~~~l 107 (184)
++|+|||+++||||||+|+|.++|.++.+++.+||++|++|+++++||..+|++.++++++.+++.|++.++++++++.+
T Consensus 1 Mtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~ 80 (201)
T 1iru_K 1 MEYLIGIQGPDYVLVASDRVAASNIVQMKDDHDKMFKMSEKILLLCVGEAGDTVQFAEYIQKNVQLYKMRNGYELSPTAA 80 (201)
T ss_dssp CCCEEEEECSSEEEEEEECCEEETTEEEESSCCCEEECSSSEEEEEEESTTHHHHHHHHHHHHHHHHHHHHSSCCCHHHH
T ss_pred CceEEEEEeCCEEEEEEcCccccCcEEEccCcceEEEecCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH-Hh-c-CCCcceeeEEEEEeCCCCeEEEEEcCCCceeecCeEEEecCHHhHHHHHhccCCCCCCHHHHhhc
Q psy2074 108 AKLFQELV-YS-Y-RDSLTAGIICAGWDRKKGGQVYCIPLGGMLMRQKMAMGGSGSTYLYGHMDNQFKENMTKKEAMST 183 (184)
Q Consensus 108 a~~l~~~l-~~-~-r~p~~~s~llaG~D~~~~~~Ly~idp~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~eea~~l 183 (184)
++++++.+ +. + ++||++++||||||++++|+||.+||+|++.++++.|+|+|+++++++||+.|+++||+|||+++
T Consensus 81 a~~~~~~l~~~~~~~~p~~~~~lvaG~D~~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~s~eea~~l 159 (201)
T 1iru_K 81 ANFTRRNLADCLRSRTPYHVNLLLAGYDEHEGPALYYMDYLAALAKAPFAAHGYGAFLTLSILDRYYTPTISRERAVEL 159 (201)
T ss_dssp HHHHHHHHHHHHTSSSCCCEEEEEEEEETTTEEEEEEECTTCCEEECSEEEESHHHHHHHHHHHHHCCTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCccEEEEEEEEeCCCCeEEEEECCCcCeEECCEEEECCcHHHHHHHHHhcccCCCCHHHHHHH
Confidence 99998765 43 2 35999999999999867999999999999999999999999999999999999999999999986
No 43
>1iru_I 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_H* 3une_H
Probab=100.00 E-value=1e-40 Score=263.80 Aligned_cols=154 Identities=31% Similarity=0.587 Sum_probs=150.3
Q ss_pred ceEEEEEeCCeEEEEEcCccccCceeeecCCCceEEecCeEEEEecCChHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHH
Q psy2074 29 TTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGA 108 (184)
Q Consensus 29 ~t~igi~~~dgVvla~d~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~~~~la 108 (184)
||+|||+++||||||+|+|.++|.++.+++.+||++|++|++|++||..+|++.+.++++.+++.|++.++++++++.++
T Consensus 1 TTivgi~~~dgVVlaaD~r~t~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (234)
T 1iru_I 1 TTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISSNLELHSLSTGRLPRVVTAN 80 (234)
T ss_dssp CCEEEEEETTEEEEEECCCEESSSBEEESSCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHCSCCCHHHHH
T ss_pred CeEEEEEeCCEEEEEEcCCcccCceeccCcccceEEecCCEEEEecCcHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 68999999999999999999999988888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCcceeeEEEEEeCCCCeEEEEEcCCCceeecCeEEEecCHHhHHHHHhccCCCCCCHHHHhhc
Q psy2074 109 KLFQELVYSYRDSLTAGIICAGWDRKKGGQVYCIPLGGMLMRQKMAMGGSGSTYLYGHMDNQFKENMTKKEAMST 183 (184)
Q Consensus 109 ~~l~~~l~~~r~p~~~s~llaG~D~~~~~~Ly~idp~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~eea~~l 183 (184)
+++++.+|.+++|+++++||||||+ +||+||.+||+|++.++++.|+|+|++.++++||+.|+++||+|||+++
T Consensus 81 ~~l~~~l~~~~~~~~v~llvaG~D~-~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eeA~~l 154 (234)
T 1iru_I 81 RMLKQMLFRYRGYIGAALVLGGVDV-TGPHLYSIYPHGSTDKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEAKNL 154 (234)
T ss_dssp HHHHHHHHHTTTCSCEEEEEEEECS-SCEEEEEECTTSCEEECSEEEESTTHHHHHHHHHHSCCTTCCHHHHHTH
T ss_pred HHHHHHHHhcCCCCceeEEEEEEcC-CCCEEEEECCCCCEEecCEEEECCchHHHHHHHHHhccCCCCHHHHHHH
Confidence 9999999999999999999999998 7899999999999999999999999999999999999999999999986
No 44
>1q5q_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4
Probab=100.00 E-value=4.4e-40 Score=260.27 Aligned_cols=155 Identities=19% Similarity=0.281 Sum_probs=149.1
Q ss_pred ceEEEEEeCCeEEEEEcCccccCceeeecCCCceEEecCeEEEEecCChHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHH
Q psy2074 29 TTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGA 108 (184)
Q Consensus 29 ~t~igi~~~dgVvla~d~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~~~~la 108 (184)
||+|||+++||||||+|+|.+.|.++.+++.+||++|+++++|++||+.+|++.++++++.+++.|++.++++++++.++
T Consensus 1 tT~vgi~~~dgVVlaaD~r~~~g~l~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (235)
T 1q5q_H 1 TTIVALTYKGGVLLAGDRRATQGNLIASRDVEKVYVTDEYSAAGIAGTAGIAIELVRLFAVELEHYEKIEGVPLTFDGKA 80 (235)
T ss_dssp CCEEEEECSSCEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CeEEEEEECCEEEEEECCCCCcCCEEecCCcCcEEEeCCcEEEEcCCcHHHHHHHHHHHHHHHHHhHHHhCCCCCHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhc----CCCcceeeEEEEEeCCCC-----eEEEEEcCCCceeec--CeEEEecCHHhHHHHHhccCCCCCCH
Q psy2074 109 KLFQELVYSY----RDSLTAGIICAGWDRKKG-----GQVYCIPLGGMLMRQ--KMAMGGSGSTYLYGHMDNQFKENMTK 177 (184)
Q Consensus 109 ~~l~~~l~~~----r~p~~~s~llaG~D~~~~-----~~Ly~idp~G~~~~~--~~~a~G~g~~~~~~~Le~~~~~~~s~ 177 (184)
+.+++++|.+ .+||++++||||||++++ |+||.+||+|++.++ ++.|+|+|+++++++||+.|+++||+
T Consensus 81 ~~l~~~~~~~~~~~~rp~~v~~lvaG~D~~~g~~~~~p~Ly~idp~G~~~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~ 160 (235)
T 1q5q_H 81 NRLASMVRGNLGAAMQGLAVVPLLVGYDLDADDESRAGRIVSYDVVGGRYEERAGYHAVGSGSLFAKSALKKIYSPDSDE 160 (235)
T ss_dssp HHHHHHHHTTHHHHTTTCCEEEEEEEECTTCSSTTSCEEEEEECTTSCEEECCSSEEEESTTHHHHHHHHHHHCCTTCCH
T ss_pred HHHHHHHHHHHHhhhcccceEEEEEEEECCCCccCCCCEEEEECCCCceEEeCCCeEEECCCHHHHHHHHHhhcCCCCCH
Confidence 9999999875 369999999999998657 999999999999999 99999999999999999999999999
Q ss_pred HHHhhc
Q psy2074 178 KEAMST 183 (184)
Q Consensus 178 eea~~l 183 (184)
|||+++
T Consensus 161 eeA~~l 166 (235)
T 1q5q_H 161 ETALRA 166 (235)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999986
No 45
>3unf_N Proteasome subunit beta type-9; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_N
Probab=100.00 E-value=3e-40 Score=254.96 Aligned_cols=153 Identities=50% Similarity=0.863 Sum_probs=146.4
Q ss_pred ceEEEEEeCCeEEEEEcCccccCceeeecCCCceEEecCeEEEEecCChHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHH
Q psy2074 29 TTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGA 108 (184)
Q Consensus 29 ~t~igi~~~dgVvla~d~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~~~~la 108 (184)
||+|||+++||||||+|+|.++|.++.+++.+||++|++|+++++||+.+|++.+.++++.+++.|++.++++++++.++
T Consensus 1 TT~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a 80 (199)
T 3unf_N 1 TTIMAVEFDGGVVVGSDSRVSAGTAVVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAA 80 (199)
T ss_dssp CEEEEEECSSCEEEEECCCEEETTEEEESSCCCEEEEETTEEEEECSCHHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHH
T ss_pred CeEEEEEeCCeEEEEECCcccCCceeEccccCceEEcCCCEEEEecccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 79999999999999999999999899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCcceeeEEEEEeCCCCeEEEEEcCCCceee-cCeEEEecCHHhHHHHHhccCCCCCCHHHHhhc
Q psy2074 109 KLFQELVYSYRDSLTAGIICAGWDRKKGGQVYCIPLGGMLMR-QKMAMGGSGSTYLYGHMDNQFKENMTKKEAMST 183 (184)
Q Consensus 109 ~~l~~~l~~~r~p~~~s~llaG~D~~~~~~Ly~idp~G~~~~-~~~~a~G~g~~~~~~~Le~~~~~~~s~eea~~l 183 (184)
+++++++|++++||++++||||||++++|+||. |+|.+.+ .+++++|+|+++++++||+.|+++||+|||+++
T Consensus 81 ~~l~~~l~~~~~p~~v~~lvaG~D~~~~p~ly~--p~G~~~~~~~~~~~Gsgs~~a~~~Le~~~~~~ms~eea~~l 154 (199)
T 3unf_N 81 NVVKNISYKYREDLLAHLIVAGWDQREGGQVYG--TMGGMLIRQPFTIGGSGSSYIYGYVDAAYKPGMTPEECRRF 154 (199)
T ss_dssp HHHHHHHHHTTTTCCCCEEEEEEETTTEEEEEE--CGGGCCEECSEEEEEGGGGGGHHHHHHHCCSSCCHHHHHHH
T ss_pred HHHHHHHHhcCCCceEEEEEEEEeCCCCcEEEE--ECCCceecCCEEEEccCHHHHHHHHHhhcCCCCCHHHHHHH
Confidence 999999999999999999999999878899999 9999755 567778999999999999999999999999986
No 46
>2z3b_A ATP-dependent protease HSLV; N-terminal nucleophIle hydrolase; 2.50A {Bacillus subtilis} SCOP: d.153.1.4 PDB: 2z3a_A 1yyf_D* 3ty6_A
Probab=100.00 E-value=1.2e-33 Score=215.08 Aligned_cols=146 Identities=21% Similarity=0.231 Sum_probs=129.2
Q ss_pred cCCceEEEEEeCCeEEEEEcCccccCce-eeecCCCceEEe-cCeEEEEecCChHHHHHHHHHHHHHHHHHHHHhCCCCc
Q psy2074 26 SCGTTIIAVEFDGGVVIGADSRSSTGAY-VANRVADKLTRV-TDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPL 103 (184)
Q Consensus 26 ~~g~t~igi~~~dgVvla~d~r~~~g~~-~~~~~~~Ki~~i-~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~ 103 (184)
.+|+|+|||+++||||||+|+|.+.|.+ +.+++.+||++| ++|++++++|..+|++.+.++++.+++.|+ + +.
T Consensus 3 ~~GtTivgi~~~dgVvlaaD~r~t~g~~~i~~~~~~KI~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~y~---g--~~ 77 (180)
T 2z3b_A 3 FHATTIFAVQHKGRSAMSGDGQVTFGQAVVMKHTARKVRKLFNGKVLAGFAGSVADAFTLFEKFEAKLEEYN---G--NL 77 (180)
T ss_dssp BCCCCEEEEEETTEEEEEECCCEEETTTEEEESCCCCEEEETTTTEEEEECSCHHHHHHHHHHHHHHHHHTT---T--CH
T ss_pred CCCeEEEEEEECCEEEEEECCCccCCCceEecCCCCcEEEECCCCEEEEeCchHHHHHHHHHHHHHHHHHhc---C--Ch
Confidence 6799999999999999999999999887 899999999999 999999999999999999999999999987 3 33
Q ss_pred HHHHHHHHHHHHHhc--CCCcceeeEEEEEeCCCCeEEEEEcCCCceee--cCeEEEecCHHhHHHHHhccCCC---CCC
Q psy2074 104 VYSGAKLFQELVYSY--RDSLTAGIICAGWDRKKGGQVYCIPLGGMLMR--QKMAMGGSGSTYLYGHMDNQFKE---NMT 176 (184)
Q Consensus 104 ~~~la~~l~~~l~~~--r~p~~~s~llaG~D~~~~~~Ly~idp~G~~~~--~~~~a~G~g~~~~~~~Le~~~~~---~~s 176 (184)
++.++ .+++.++.+ .+|+++++||| | +|+||.+||+|++.+ +++.|+|+|+++++++||+.|++ +||
T Consensus 78 ~~~~~-~l~~~~~~~~~~rp~~~~~lva--d---~p~ly~~d~~G~~~~~~~~~~a~Gsgs~~a~~~le~~~~~~~~~mt 151 (180)
T 2z3b_A 78 KRAAV-ELAKEWRSDKVLRKLEAMLIVM--N---QDTLLLVSGTGEVIEPDDGILAIGSGGNYALAAGRALKKHAGESMS 151 (180)
T ss_dssp HHHHH-HHHHHHHHCTTGGGCCCCEEEE--C---SSCEEEECTTCCEECCSSSEEEESTTHHHHHHHHHHHHHHHGGGCC
T ss_pred HHHHH-HHHHHHHhhhCcCcceEEEEEE--c---CCeEEEECCCCcEEEeCCCEEEECCCHHHHHHHHHHhhhccCCCCC
Confidence 44444 345555443 35999999999 4 599999999999997 59999999999999999999998 999
Q ss_pred HHHHhh
Q psy2074 177 KKEAMS 182 (184)
Q Consensus 177 ~eea~~ 182 (184)
.||+++
T Consensus 152 ~eel~~ 157 (180)
T 2z3b_A 152 ASEIAR 157 (180)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999753
No 47
>1m4y_A ATP-dependent protease HSLV; N-terminal catalytic threonine residue, hydrolase; 2.10A {Thermotoga maritima} SCOP: d.153.1.4
Probab=100.00 E-value=1.4e-33 Score=212.84 Aligned_cols=142 Identities=23% Similarity=0.319 Sum_probs=127.9
Q ss_pred ceEEEEEeCCeEEEEEcCccccCceeeecCCCceEEe-cCeEEEEecCChHHHHHHHHHHHHHHHHHHHHhCCCCcHHHH
Q psy2074 29 TTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRV-TDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSG 107 (184)
Q Consensus 29 ~t~igi~~~dgVvla~d~r~~~g~~~~~~~~~Ki~~i-~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~~~~l 107 (184)
||+|||+++||||||+|+|.+.|.++.+++.+||++| ++|+++++||..+|++.+.++++.+++.|+++ .++.+
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~Ki~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~-----~~~~~ 75 (171)
T 1m4y_A 1 TTILVVRRNGQTVMGGDGQVTFGSTVLKGNARKVRKLGEGKVLAGFAGSVADAMTLFDRFEAKLREWGGN-----LTKAA 75 (171)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEETTTTEEEEEESCHHHHHHHHHHHHHHHHHTTTC-----HHHHH
T ss_pred CeEEEEEECCEEEEEECCCcccCCEEEeCCcceEEEeCCCCEEEEeCccHHHHHHHHHHHHHHHHHhccc-----HHHHH
Confidence 6899999999999999999999999999999999999 99999999999999999999999999988743 36666
Q ss_pred HHHHHHHHHhcC--CCcceeeEEEEEeCCCCeEEEEEcCCCceeecC--eEEEecCHHhHHHHHhccCC-CCCCHHHHh
Q psy2074 108 AKLFQELVYSYR--DSLTAGIICAGWDRKKGGQVYCIPLGGMLMRQK--MAMGGSGSTYLYGHMDNQFK-ENMTKKEAM 181 (184)
Q Consensus 108 a~~l~~~l~~~r--~p~~~s~llaG~D~~~~~~Ly~idp~G~~~~~~--~~a~G~g~~~~~~~Le~~~~-~~~s~eea~ 181 (184)
+++.+ .++.++ +|+++++|++ | +|+||.+||+|++.+++ +.|+|+|+++++++||+.|+ ++||.+|++
T Consensus 76 ~~l~~-~~~~~~~~~~~~~~~lv~--D---~p~Ly~~d~~G~~~~~~~~~~a~Gsgs~~a~~~le~~~~~~~ms~~~l~ 148 (171)
T 1m4y_A 76 VELAK-DWRTDRVLRRLEALLLVA--D---KENIFIISGNGEVIQPDDDAAAIGSGGPYALAAAKALLRNTDLSAREIV 148 (171)
T ss_dssp HHHHH-HHHHCTTGGGCCCEEEEE--C---SSCEEEECTTSCEECCSSSEEEESTTHHHHHHHHHHHHHHCCCCHHHHH
T ss_pred HHHHH-HHHHhCCCCceEEEEEEE--c---CCEEEEECCCCCEEecCCCEEEECCcHHHHHHHHHHhcccCCCCHHHHH
Confidence 66654 565554 3799999888 5 79999999999999987 99999999999999999999 999987764
No 48
>1g3k_A ATP-dependent protease HSLV; hydrolase; 1.90A {Haemophilus influenzae} SCOP: d.153.1.4 PDB: 1g3i_G 1jjw_A 1kyi_G* 1ofh_G* 1ofi_G* 1e94_A* 1g4a_B* 1g4b_M 1hqy_A* 1ht1_C* 1ht2_A* 1ned_A
Probab=100.00 E-value=2.1e-33 Score=212.57 Aligned_cols=143 Identities=20% Similarity=0.260 Sum_probs=128.6
Q ss_pred ceEEEEEeCCeEEEEEcCccccCceeeecCCCceEEe-cCeEEEEecCChHHHHHHHHHHHHHHHHHHHHhCCCCcHHHH
Q psy2074 29 TTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRV-TDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSG 107 (184)
Q Consensus 29 ~t~igi~~~dgVvla~d~r~~~g~~~~~~~~~Ki~~i-~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~~~~l 107 (184)
||+|||+++||||||+|+|.+.|.++.+++.+||++| ++|+++++||+.+|++.+.++++.+++.|++ ++...
T Consensus 1 tT~vgi~~~dgVvlaaD~r~t~g~~i~~~~~~Ki~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~------~~~~~ 74 (174)
T 1g3k_A 1 TTIVSVRRNGQVVVGGDGQVSLGNTVMKGNARKVRRLYNGKVLAGFAGGTADAFTLFELFERKLEMHQG------HLLKS 74 (174)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEETTTTEEEEEESCHHHHHHHHHHHHHHHHHTTT------CHHHH
T ss_pred CeEEEEEECCEEEEEECCCCccCCeeEeCCCCcEEEECCCCEEEEeCccHHHHHHHHHHHHHHHHHhcC------cHHHH
Confidence 6899999999999999999999988999999999999 9999999999999999999999999999875 45556
Q ss_pred HHHHHHHHHhcCC--CcceeeEEEEEeCCCCeEEEEEcCCCceeecC---eEEEecCHHhHHHHHhccCC-CCCCHHHHh
Q psy2074 108 AKLFQELVYSYRD--SLTAGIICAGWDRKKGGQVYCIPLGGMLMRQK---MAMGGSGSTYLYGHMDNQFK-ENMTKKEAM 181 (184)
Q Consensus 108 a~~l~~~l~~~r~--p~~~s~llaG~D~~~~~~Ly~idp~G~~~~~~---~~a~G~g~~~~~~~Le~~~~-~~~s~eea~ 181 (184)
+..+++.++.++. | ++++++|+| +|+||.+||+|++.+++ +.|+|+|+++++++||+.|+ ++||.+|.+
T Consensus 75 ~~~l~~~~~~~~~~r~--~~~~l~g~d---~p~Ly~~d~~G~~~~~~~~~~~a~Gsgs~~a~~~le~~~~~~~mt~~~l~ 149 (174)
T 1g3k_A 75 AVELAKDWRTDRALRK--LEAMLIVAD---EKESLIITGIGDVVQPEEDQILAIGSGGNYALSAARALVENTELSAHEIV 149 (174)
T ss_dssp HHHHHHHHHHSTTGGG--CCCEEEEEC---SSCEEEEETTTEEECCCTTCEEEESTTHHHHHHHHHHHHHHCCCCHHHHH
T ss_pred HHHHHHHHHhccCcCc--ceEEEEEEC---CCEEEEEcCCCcEEecCCCcEEEEcccHHHHHHHHHHhcccCCCCHHHHH
Confidence 6677777776654 6 567888897 69999999999999988 99999999999999999999 999988765
Q ss_pred h
Q psy2074 182 S 182 (184)
Q Consensus 182 ~ 182 (184)
+
T Consensus 150 ~ 150 (174)
T 1g3k_A 150 E 150 (174)
T ss_dssp H
T ss_pred H
Confidence 3
No 49
>3lvl_A NIFU-like protein; protein-protein complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PLP; 3.00A {Escherichia coli} PDB: 2l4x_A 2kqk_A 1q48_A 1r9p_A 1wfz_A
Probab=25.81 E-value=59 Score=22.20 Aligned_cols=47 Identities=13% Similarity=0.169 Sum_probs=32.3
Q ss_pred eEEE-EEcCCCceeecCeEEEecCHHhHHHHHhccCCCCCCHHHHhhc
Q psy2074 137 GQVY-CIPLGGMLMRQKMAMGGSGSTYLYGHMDNQFKENMTKKEAMST 183 (184)
Q Consensus 137 ~~Ly-~idp~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~eea~~l 183 (184)
-.|| .+|+.|......|-+.|-+...+-.-+=..+-.+.|++||.++
T Consensus 42 i~l~l~v~~~~~I~d~~f~~~GCais~ASaS~~te~i~Gkt~~ea~~i 89 (129)
T 3lvl_A 42 MKLQIKVNDEGIIEDARFKTYGCGSAIASSSLVTEWVKGKSLDEAQAI 89 (129)
T ss_dssp EEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHHHHTTCCHHHHHTC
T ss_pred EEEEEEECCCCeEEEEEEEecCCHHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 3455 5676688888899988866655554333333348999999876
No 50
>3kol_A Oxidoreductase, glyoxalase/bleomycin resistance protein/dioxygenase; metal ION binding, NYSGXRC, PSI2, structural genomics; 1.90A {Nostoc punctiforme pcc 73102}
Probab=25.30 E-value=1.3e+02 Score=19.52 Aligned_cols=17 Identities=24% Similarity=0.462 Sum_probs=13.3
Q ss_pred CCeEEEEEcCCCceeec
Q psy2074 135 KGGQVYCIPLGGMLMRQ 151 (184)
Q Consensus 135 ~~~~Ly~idp~G~~~~~ 151 (184)
.+..+|..||.|...+.
T Consensus 132 ~g~~~~~~DPdG~~iel 148 (156)
T 3kol_A 132 TGRGVYFYDPDGFMIEI 148 (156)
T ss_dssp CCEEEEEECTTSCEEEE
T ss_pred CccEEEEECCCCCEEEE
Confidence 45578888999998774
No 51
>4eo3_A Bacterioferritin comigratory protein/NADH dehydro; thioredoxin-fold, alpha-beta-aplha sandwich fold, antioxidan oxidoreductase, FMN binding; HET: FMN; 1.65A {Thermotoga maritima}
Probab=20.97 E-value=12 Score=29.76 Aligned_cols=46 Identities=9% Similarity=0.129 Sum_probs=32.4
Q ss_pred eEEEEEcCCCceee-cCeEEEecCHHhHHHHHhccCCCCCCHHHHhh
Q psy2074 137 GQVYCIPLGGMLMR-QKMAMGGSGSTYLYGHMDNQFKENMTKKEAMS 182 (184)
Q Consensus 137 ~~Ly~idp~G~~~~-~~~~a~G~g~~~~~~~Le~~~~~~~s~eea~~ 182 (184)
|..|-||+.|.... +.-+-.+.....+...|++....+|++.|+++
T Consensus 103 r~tfiId~~G~i~~~~~~v~~~~h~~~~l~~~~~~~~~~~~~~~~I~ 149 (322)
T 4eo3_A 103 RSTFLIDRWGFVRKEWRRVKVEGHVQEVKEALDRLIEEDLSLNKHIE 149 (322)
T ss_dssp CEEEEECTTSBEEEEEESCCSTTHHHHHHHHHHHHHHHHTSCCHHHH
T ss_pred cEEEEECCCCEEEEEEeCCCccccHHHHHHHHhhhchhhhHHHHHHH
Confidence 67899999999875 33333444556677777777667888888775
Done!