RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy2074
(184 letters)
>gnl|CDD|239731 cd03762, proteasome_beta_type_6, proteasome beta type-6 subunit.
The 20S proteasome, multisubunit proteolytic complex, is
the central enzyme of nonlysosomal protein degradation
in both the cytosol and nucleus. It is composed of 28
subunits arranged as four homoheptameric rings that
stack on top of one another forming an elongated
alpha-beta-beta-alpha cylinder with a central cavity.
The proteasome alpha and beta subunits are members of
the N-terminal nucleophile (Ntn)-hydrolase superfamily.
Their N-terminal threonine residues are exposed as a
nucleophile in peptide bond hydrolysis. Mammals have 7
alpha and 7 beta proteasome subunits while archaea have
one of each.
Length = 188
Score = 261 bits (669), Expect = 3e-90
Identities = 102/152 (67%), Positives = 126/152 (82%)
Query: 29 TTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVS 88
TTIIAVE+DGGVV+GADSR+STG+YVANRV DKLT++ D IYCCRSGSAADTQAI+D+V
Sbjct: 1 TTIIAVEYDGGVVLGADSRTSTGSYVANRVTDKLTQLHDRIYCCRSGSAADTQAIADYVR 60
Query: 89 YNLDLQRMELGEEPLVYSGAKLFQELVYSYRDSLTAGIICAGWDRKKGGQVYCIPLGGML 148
Y LD+ +ELGE PLV + A LF+ L Y+Y++ L+AGII AGWD + GGQVY IPLGGML
Sbjct: 61 YYLDMHSIELGEPPLVKTAASLFKNLCYNYKEMLSAGIIVAGWDEQNGGQVYSIPLGGML 120
Query: 149 MRQKMAMGGSGSTYLYGHMDNQFKENMTKKEA 180
+RQ A+GGSGSTY+YG++D +K MT +E
Sbjct: 121 IRQPFAIGGSGSTYIYGYVDANYKPGMTLEEC 152
>gnl|CDD|238893 cd01912, proteasome_beta, proteasome beta subunit. The 20S
proteasome, multisubunit proteolytic complex, is the
central enzyme of nonlysosomal protein degradation in
both the cytosol and nucleus. It is composed of 28
subunits arranged as four homoheptameric rings that
stack on top of one another forming an elongated
alpha-beta-beta-alpha cylinder with a central cavity.
The proteasome alpha and beta subunits are members of
the N-terminal nucleophile (Ntn)-hydrolase superfamily.
Their N-terminal threonine residues are exposed as a
nucleophile in peptide bond hydrolysis. Mammals have 7
alpha and 7 beta proteasome subunits while archaea have
one of each.
Length = 189
Score = 169 bits (430), Expect = 6e-54
Identities = 59/154 (38%), Positives = 89/154 (57%), Gaps = 1/154 (0%)
Query: 29 TTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVS 88
TTI+ ++ GVV+ AD+R+S G+ VA+R DK+ +++DNI +GSAADTQA++ +
Sbjct: 1 TTIVGIKGKDGVVLAADTRASAGSLVASRNFDKIFKISDNILLGTAGSAADTQALTRLLK 60
Query: 89 YNLDLQRMELGEEPLVYSGAKLFQELVYSYR-DSLTAGIICAGWDRKKGGQVYCIPLGGM 147
NL L + G E V + A L ++YSYR +I G D+ G +Y + G
Sbjct: 61 RNLRLYELRNGRELSVKAAANLLSNILYSYRGFPYYVSLIVGGVDKGGGPFLYYVDPLGS 120
Query: 148 LMRQKMAMGGSGSTYLYGHMDNQFKENMTKKEAM 181
L+ GSGS Y YG +D +K +MT +EA+
Sbjct: 121 LIEAPFVATGSGSKYAYGILDRGYKPDMTLEEAV 154
>gnl|CDD|238887 cd01906, proteasome_protease_HslV, proteasome_protease_HslV. This
group contains the eukaryotic proteosome alpha and beta
subunits and the prokaryotic protease hslV subunit.
Proteasomes are large multimeric self-compartmentalizing
proteases, involved in the clearance of misfolded
proteins, the breakdown of regulatory proteins, and the
processing of proteins such as the preparation of
peptides for immune presentation. Two main proteasomal
types are distinguished by their different tertiary
structures: the eukaryotic/archeal 20S proteasome and
the prokaryotic proteasome-like heat shock protein
encoded by heat shock locus V, hslV. The proteasome
core particle is a highly conserved cylindrical
structure made up of non-identical subunits that have
their active sites on the inner walls of a large central
cavity. The proteasome subunits of bacteria, archaea,
and eukaryotes all share a conserved Ntn (N terminal
nucleophile) hydrolase fold and a catalytic mechanism
involving an N-terminal nucleophilic threonine that is
exposed by post-translational processing of an inactive
propeptide.
Length = 182
Score = 149 bits (378), Expect = 4e-46
Identities = 53/155 (34%), Positives = 83/155 (53%), Gaps = 3/155 (1%)
Query: 29 TTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVS 88
TTI+ ++ GVV+ AD R ++G VA+ +K+ ++ D+I C +G AAD Q + + +
Sbjct: 1 TTIVGIKGKDGVVLAADKRVTSGLLVASSTVEKIFKIDDHIGCAFAGLAADAQTLVERLR 60
Query: 89 YNLDLQRMELGEEPLVYSGAKLFQELVYSYRDSLT---AGIICAGWDRKKGGQVYCIPLG 145
L R+ GE V + AKL L+Y Y SL ++ AG D + G Q+Y +
Sbjct: 61 KEAQLYRLRYGEPIPVEALAKLLANLLYEYTQSLRPLGVSLLVAGVDEEGGPQLYSVDPS 120
Query: 146 GMLMRQKMAMGGSGSTYLYGHMDNQFKENMTKKEA 180
G + K GSGS Y G ++ +K +MT +EA
Sbjct: 121 GSYIEYKATAIGSGSQYALGILEKLYKPDMTLEEA 155
>gnl|CDD|215805 pfam00227, Proteasome, Proteasome subunit. The proteasome is a
multisubunit structure that degrades proteins. Protein
degradation is an essential component of regulation
because proteins can become misfolded, damaged, or
unnecessary. Proteasomes and their homologues vary
greatly in complexity: from HslV (heat shock locus v),
which is encoded by 1 gene in bacteria, to the
eukaryotic 20S proteasome, which is encoded by more than
14 genes. Recently evidence of two novel groups of
bacterial proteasomes was proposed. The first is Anbu,
which is sparsely distributed among cyanobacteria and
proteobacteria. The second is call beta-proteobacteria
proteasome homologue (BPH).
Length = 188
Score = 143 bits (363), Expect = 8e-44
Identities = 49/160 (30%), Positives = 79/160 (49%), Gaps = 5/160 (3%)
Query: 26 SCGTTIIAVEFDGGVVIGADSRSSTGAYVANRV-ADKLTRVTDNIYCCRSGSAADTQAIS 84
GTTI+ ++ GVV+ AD R++ G+ + ++ +K+ ++ D+I +G AAD Q +
Sbjct: 2 KTGTTIVGIKGKDGVVLAADKRATRGSKLLSKDTVEKIFKIDDHIGMAFAGLAADAQTLV 61
Query: 85 DFVSYNLDLQRMELGEEPLV----YSGAKLFQELVYSYRDSLTAGIICAGWDRKKGGQVY 140
D+ L R+ G V KL YS R ++ AG+D G +Y
Sbjct: 62 DYARAEAQLYRLRYGRPISVELAKRIADKLQAYTQYSGRRPYGVSLLIAGYDEDGGPHLY 121
Query: 141 CIPLGGMLMRQKMAMGGSGSTYLYGHMDNQFKENMTKKEA 180
I G ++ K GSGS Y YG ++ +K +MT +EA
Sbjct: 122 SIDPSGSVIEYKATAIGSGSQYAYGFLEKLYKPDMTLEEA 161
>gnl|CDD|239732 cd03763, proteasome_beta_type_7, proteasome beta type-7 subunit.
The 20S proteasome, multisubunit proteolytic complex, is
the central enzyme of nonlysosomal protein degradation
in both the cytosol and nucleus. It is composed of 28
subunits arranged as four homoheptameric rings that
stack on top of one another forming an elongated
alpha-beta-beta-alpha cylinder with a central cavity.
The proteasome alpha and beta subunits are members of
the N-terminal nucleophile (Ntn)-hydrolase superfamily.
Their N-terminal threonine residues are exposed as a
nucleophile in peptide bond hydrolysis. Mammals have 7
alpha and 7 beta proteasome subunits while archaea have
one of each.
Length = 189
Score = 118 bits (299), Expect = 4e-34
Identities = 52/153 (33%), Positives = 92/153 (60%), Gaps = 1/153 (0%)
Query: 29 TTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVS 88
TTI+ V F GVV+GAD+R++ G VA++ +K+ + NIYCC +G+AADT+A+++ +S
Sbjct: 1 TTIVGVVFKDGVVLGADTRATEGPIVADKNCEKIHYIAPNIYCCGAGTAADTEAVTNMIS 60
Query: 89 YNLDLQRMELGEEPLVYSGAKLFQELVYSYRDSLTAGIICAGWDRKKGGQVYCIPLGGML 148
NL+L R+ G +P V + + ++ ++ Y+ + A ++ G D G +Y I G
Sbjct: 61 SNLELHRLNTGRKPRVVTALTMLKQHLFRYQGHIGAALVLGGVD-YTGPHLYSIYPHGST 119
Query: 149 MRQKMAMGGSGSTYLYGHMDNQFKENMTKKEAM 181
+ GSGS +++++K +MT++EA
Sbjct: 120 DKLPFVTMGSGSLAAMSVLEDRYKPDMTEEEAK 152
>gnl|CDD|223711 COG0638, PRE1, 20S proteasome, alpha and beta subunits
[Posttranslational modification, protein turnover,
chaperones].
Length = 236
Score = 118 bits (297), Expect = 2e-33
Identities = 45/157 (28%), Positives = 81/157 (51%), Gaps = 4/157 (2%)
Query: 28 GTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFV 87
GTT + ++ GVV+ AD R+++G +A+ +K+ ++ D+I +G AAD Q + +
Sbjct: 30 GTTTVGIKGKDGVVLAADKRATSGLLIASSNVEKIFKIDDHIGMAIAGLAADAQVLVRYA 89
Query: 88 SYNLDLQRMELGEEPLVYSGAKLFQELVYSYRDS---LTAGIICAGWDRKKGGQVYCIPL 144
L R+ GE V + AKL ++ Y S ++ AG D G ++Y
Sbjct: 90 RAEAQLYRLRYGEPISVEALAKLLSNILQEYTQSGRPYGVSLLVAGVD-DGGPRLYSTDP 148
Query: 145 GGMLMRQKMAMGGSGSTYLYGHMDNQFKENMTKKEAM 181
G K GSGS + YG ++ +++E+++ +EA+
Sbjct: 149 SGSYNEYKATAIGSGSQFAYGFLEKEYREDLSLEEAI 185
>gnl|CDD|238884 cd01901, Ntn_hydrolase, The Ntn hydrolases (N-terminal nucleophile)
are a diverse superfamily of of enzymes that are
activated autocatalytically via an N-terminally lcated
nucleophilic amino acid. N-terminal nucleophile (NTN-)
hydrolase superfamily, which contains a four-layered
alpha, beta, beta, alpha core structure. This family of
hydrolases includes penicillin acylase, the 20S
proteasome alpha and beta subunits, and glutamate
synthase. The mechanism of activation of these proteins
is conserved, although they differ in their substrate
specificities. All known members catalyze the hydrolysis
of amide bonds in either proteins or small molecules,
and each one of them is synthesized as a preprotein. For
each, an autocatalytic endoproteolytic process generates
a new N-terminal residue. This mature N-terminal residue
is central to catalysis and acts as both a polarizing
base and a nucleophile during the reaction. The
N-terminal amino group acts as the proton acceptor and
activates either the nucleophilic hydroxyl in a Ser or
Thr residue or the nucleophilic thiol in a Cys residue.
The position of the N-terminal nucleophile in the active
site and the mechanism of catalysis are conserved in
this family, despite considerable variation in the
protein sequences.
Length = 164
Score = 114 bits (287), Expect = 1e-32
Identities = 48/159 (30%), Positives = 74/159 (46%), Gaps = 4/159 (2%)
Query: 29 TTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVS 88
+T +A++ GGVV+ AD R S+G VA K+ + D I +G AAD Q + +
Sbjct: 1 STSVAIKGKGGVVLAADKRLSSGLPVAGSPVIKIGKNEDGIAWGLAGLAADAQTLVRRLR 60
Query: 89 YNLDLQRMELGEEPLVYSGAKLFQELVYSYRDS--LTAGIICAGWDRKKGGQVYCIPLGG 146
L L R+ GE V + AK +L+ Y +I AG D + GG +Y I G
Sbjct: 61 EALQLYRLRYGEPISVVALAKELAKLLQVYTQGRPFGVNLIVAGVD-EGGGNLYYIDPSG 119
Query: 147 MLMRQ-KMAMGGSGSTYLYGHMDNQFKENMTKKEAMSTF 184
++ GS S ++ +K +MT +EA+
Sbjct: 120 PVIENPGAVATGSRSQRAKSLLEKLYKPDMTLEEAVELA 158
>gnl|CDD|185666 PTZ00488, PTZ00488, Proteasome subunit beta type-5; Provisional.
Length = 247
Score = 91.2 bits (226), Expect = 6e-23
Identities = 47/154 (30%), Positives = 82/154 (53%), Gaps = 2/154 (1%)
Query: 28 GTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFV 87
GTT +A ++ GG++I DS+++ G Y+A++ K+ + + +G AAD +
Sbjct: 39 GTTTLAFKYGGGIIIAVDSKATAGPYIASQSVKKVIEINPTLLGTMAGGAADCSFWEREL 98
Query: 88 SYNLDLQRMELGEEPLVYSGAKLFQELVYSYRD-SLTAGIICAGWDRKKGGQVYCIPLGG 146
+ L + GE V + +K+ +V++Y+ L+ G + GWD KKG ++ + G
Sbjct: 99 AMQCRLYELRNGELISVAAASKILANIVWNYKGMGLSMGTMICGWD-KKGPGLFYVDNDG 157
Query: 147 MLMRQKMAMGGSGSTYLYGHMDNQFKENMTKKEA 180
+ M GSGSTY YG +D FK ++ +EA
Sbjct: 158 TRLHGNMFSCGSGSTYAYGVLDAGFKWDLNDEEA 191
>gnl|CDD|239730 cd03761, proteasome_beta_type_5, proteasome beta type-5 subunit.
The 20S proteasome, multisubunit proteolytic complex, is
the central enzyme of nonlysosomal protein degradation
in both the cytosol and nucleus. It is composed of 28
subunits arranged as four homoheptameric rings that
stack on top of one another forming an elongated
alpha-beta-beta-alpha cylinder with a central cavity.
The proteasome alpha and beta subunits are members of
the N-terminal nucleophile (Ntn)-hydrolase superfamily.
Their N-terminal threonine residues are exposed as a
nucleophile in peptide bond hydrolysis. Mammals have 7
alpha and 7 beta proteasome subunits while archaea have
one of each.
Length = 188
Score = 88.1 bits (219), Expect = 3e-22
Identities = 46/153 (30%), Positives = 81/153 (52%), Gaps = 2/153 (1%)
Query: 29 TTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVS 88
TT +A F GGV++ DSR++ G+Y+A++ K+ + + +G AAD Q +
Sbjct: 1 TTTLAFIFQGGVIVAVDSRATAGSYIASQTVKKVIEINPYLLGTMAGGAADCQYWERVLG 60
Query: 89 YNLDLQRMELGEEPLVYSGAKLFQELVYSYRD-SLTAGIICAGWDRKKGGQVYCIPLGGM 147
L + E V + +KL ++Y Y+ L+ G + GWD K G +Y + G
Sbjct: 61 RECRLYELRNKERISVAAASKLLSNMLYQYKGMGLSMGTMICGWD-KTGPGLYYVDSDGT 119
Query: 148 LMRQKMAMGGSGSTYLYGHMDNQFKENMTKKEA 180
++ + GSGSTY YG +D+ ++ +++ +EA
Sbjct: 120 RLKGDLFSVGSGSTYAYGVLDSGYRYDLSVEEA 152
>gnl|CDD|234287 TIGR03634, arc_protsome_B, proteasome endopeptidase complex,
archaeal, beta subunit. This protein family describes
the archaeal proteasome beta subunit, homologous to both
the alpha subunit and to the alpha and beta subunits of
eukaryotic proteasome subunits. This family is universal
in the first 29 complete archaeal genomes but
occasionally is duplicated [Protein fate, Degradation of
proteins, peptides, and glycopeptides].
Length = 185
Score = 86.9 bits (216), Expect = 9e-22
Identities = 45/155 (29%), Positives = 81/155 (52%), Gaps = 4/155 (2%)
Query: 28 GTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFV 87
GTT + ++ GVV+ AD R+S G +VA++ A K+ ++ D I +GS D Q++ +
Sbjct: 1 GTTTVGIKCKDGVVLAADKRASMGNFVASKNAKKVFQIDDYIAMTIAGSVGDAQSLVRIL 60
Query: 88 SYNLDLQRMELGEEPLVYSGAKLFQELVYSYR-DSLTAGIICAGWDRKKGGQVYCI-PLG 145
L + G V + A L ++ S R ++ G D ++G +Y + P G
Sbjct: 61 KAEAKLYELRRGRPMSVKALATLLSNILNSNRFFPFIVQLLVGGVD-EEGPHLYSLDPAG 119
Query: 146 GMLMRQKMAMGGSGSTYLYGHMDNQFKENMTKKEA 180
G+ + GSGS YG ++++++E+M+ +EA
Sbjct: 120 GI-IEDDYTATGSGSPVAYGVLEDEYREDMSVEEA 153
>gnl|CDD|239733 cd03764, proteasome_beta_archeal, Archeal proteasome, beta subunit.
The 20S proteasome, multisubunit proteolytic complex, is
the central enzyme for non-lysosomal protein degradation
in both the cytosol and the nucleus. It is composed of
28 subunits arranged as four homoheptameric rings that
stack on top of one another forming an elongated
alpha-beta-beta-alpha cylinder with a central cavity.
The proteasome alpha and beta subunits are both members
of the N-terminal nucleophile (Ntn)-hydrolase
superfamily. Their N-terminal threonine residues are
exposed as a nucleophile in peptide bond hydrolysis.
Mammals have 7 alpha and 7 beta proteasome subunits
while archaea have one of each.
Length = 188
Score = 84.6 bits (210), Expect = 7e-21
Identities = 44/154 (28%), Positives = 80/154 (51%), Gaps = 4/154 (2%)
Query: 29 TTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVS 88
TT + + GVV+ AD R+S G ++A++ K+ ++ D I +GS D Q++ +
Sbjct: 1 TTTVGIVCKDGVVLAADKRASMGNFIASKNVKKIFQIDDKIAMTIAGSVGDAQSLVRILK 60
Query: 89 YNLDLQRMELGEEPLVYSGAKLFQELVYSYRD-SLTAGIICAGWDRKKGGQVYCI-PLGG 146
L + G + + A L ++ S + ++ G D ++G +Y + PLG
Sbjct: 61 AEARLYELRRGRPMSIKALATLLSNILNSSKYFPYIVQLLIGGVD-EEGPHLYSLDPLGS 119
Query: 147 MLMRQKMAMGGSGSTYLYGHMDNQFKENMTKKEA 180
+ + K GSGS Y YG +++++KE+MT +EA
Sbjct: 120 I-IEDKYTATGSGSPYAYGVLEDEYKEDMTVEEA 152
>gnl|CDD|239727 cd03758, proteasome_beta_type_2, proteasome beta type-2 subunit.
The 20S proteasome, multisubunit proteolytic complex, is
the central enzyme of nonlysosomal protein degradation
in both the cytosol and nucleus. It is composed of 28
subunits arranged as four homoheptameric rings that
stack on top of one another forming an elongated
alpha-beta-beta-alpha cylinder with a central cavity.
The proteasome alpha and beta subunits are members of
the N-terminal nucleophile (Ntn)-hydrolase superfamily.
Their N-terminal threonine residues are exposed as a
nucleophile in peptide bond hydrolysis.Mammals have 7
alpha and 7 beta proteasome subunits while archaea have
one of each.
Length = 193
Score = 58.4 bits (142), Expect = 4e-11
Identities = 40/158 (25%), Positives = 76/158 (48%), Gaps = 3/158 (1%)
Query: 30 TIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSY 89
T+I ++ V++ AD+ ++ V DK+ +++D+ SG A D ++++
Sbjct: 3 TLIGIKGKDFVILAADTSAARSILVLKDDEDKIYKLSDHKLMACSGEAGDRLQFAEYIQK 62
Query: 90 NLDLQRMELGEEPLVYSGAKLFQ-ELVYSYR--DSLTAGIICAGWDRKKGGQVYCIPLGG 146
N+ L +M G E + A + EL S R ++ AG+D+ +G +Y I G
Sbjct: 63 NIQLYKMRNGYELSPKAAANFTRRELAESLRSRTPYQVNLLLAGYDKVEGPSLYYIDYLG 122
Query: 147 MLMRQKMAMGGSGSTYLYGHMDNQFKENMTKKEAMSTF 184
L++ A G G+ + +D +K +MT +EA+
Sbjct: 123 TLVKVPYAAHGYGAYFCLSILDRYYKPDMTVEEALELM 160
>gnl|CDD|238892 cd01911, proteasome_alpha, proteasome alpha subunit. The 20S
proteasome, multisubunit proteolytic complex, is the
central enzyme of nonlysosomal protein degradation in
both the cytosol and nucleus. It is composed of 28
subunits arranged as four homoheptameric rings that
stack on top of one another forming an elongated
alpha-beta-beta-alpha cylinder with a central cavity.
The proteasome alpha and beta subunits are members of
the N-terminal nucleophile (Ntn)-hydrolase superfamily.
Their N-terminal threonine residues are exposed as a
nucleophile in peptide bond hydrolysis. Mammals have 7
different alpha and 10 different beta proteasome subunit
genes while archaea have one of each.
Length = 209
Score = 48.2 bits (116), Expect = 3e-07
Identities = 38/167 (22%), Positives = 70/167 (41%), Gaps = 24/167 (14%)
Query: 28 GTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAISDF- 86
G+T + ++ GVV+ + + T + +K+ ++ D+I C +G AD + + +
Sbjct: 27 GSTAVGIKGKDGVVLAVE-KKVTSKLLDPSSVEKIFKIDDHIGCAVAGLTADARVLVNRA 85
Query: 87 ----VSYNLDLQRMELGEEPLVYSGAKLFQELV-----YSYRDSLTAGIICAGWDRKKGG 137
+Y R GE V K +L Y ++ AG+D + G
Sbjct: 86 RVEAQNY-----RYTYGEPIPVEVLVKRIADLAQVYTQYGGVRPFGVSLLIAGYDEEGGP 140
Query: 138 QVYCIPLGGMLMRQKMAMGGSGS----TYLYGHMDNQFKENMTKKEA 180
Q+Y G K G GS T+L + ++K+++T +EA
Sbjct: 141 QLYQTDPSGTYFGYKATAIGKGSQEAKTFL----EKRYKKDLTLEEA 183
>gnl|CDD|239726 cd03757, proteasome_beta_type_1, proteasome beta type-1 subunit.
The 20S proteasome, multisubunit proteolytic complex, is
the central enzyme of nonlysosomal protein degradation
in both the cytosol and nucleus. It is composed of 28
subunits arranged as four homoheptameric rings that
stack on top of one another forming an elongated
alpha-beta-beta-alpha cylinder with a central cavity.
The proteasome alpha and beta subunits are members of
the N-terminal nucleophile (Ntn)-hydrolase superfamily.
Their N-terminal threonine residues are exposed as a
nucleophile in peptide bond hydrolysis. Mammals have 7
alpha and 7 beta proteasome subunits while archaea have
one of each.
Length = 212
Score = 47.6 bits (114), Expect = 5e-07
Identities = 40/149 (26%), Positives = 70/149 (46%), Gaps = 11/149 (7%)
Query: 28 GTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFV 87
G T++A+ + VI D+R S G + +R + K+ ++TD SG AD A++ +
Sbjct: 8 GGTVLAIAGNDFAVIAGDTRLSEGYSILSRDSPKIFKLTDKCVLGSSGFQADILALTKRL 67
Query: 88 SYNLDLQRMELGEEPLVYSGAKLFQELVYS------YRDSLTAGIICAGWDRKKGGQVYC 141
+ + + +E + A+L ++YS Y ++ AGI D + G VY
Sbjct: 68 KARIKMYKYSHNKEMSTEAIAQLLSTILYSRRFFPYYVFNILAGI-----DEEGKGVVYS 122
Query: 142 IPLGGMLMRQKMAMGGSGSTYLYGHMDNQ 170
G R+ + GGS S+ + +DNQ
Sbjct: 123 YDPVGSYERETYSAGGSASSLIQPLLDNQ 151
>gnl|CDD|239729 cd03760, proteasome_beta_type_4, proteasome beta type-4 subunit.
The 20S proteasome, multisubunit proteolytic complex, is
the central enzyme of nonlysosomal protein degradation
in both the cytosol and nucleus. It is composed of 28
subunits arranged as four homoheptameric rings that
stack on top of one another forming an elongated
alpha-beta-beta-alpha cylinder with a central cavity.
The proteasome alpha and beta subunits are members of
the N-terminal nucleophile (Ntn)-hydrolase superfamily.
Their N-terminal threonine residues are exposed as a
nucleophile in peptide bond hydrolysis.Mammals have 7
alpha and 7 beta proteasome subunits while archaea have
one of each.
Length = 197
Score = 46.8 bits (112), Expect = 8e-07
Identities = 22/74 (29%), Positives = 41/74 (55%), Gaps = 6/74 (8%)
Query: 28 GTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFV 87
GT++IA+++ GV+I AD+ S G+ + +++ +V DN SG AD Q ++
Sbjct: 2 GTSVIAIKYKDGVIIAADTLGSYGSLARFKNVERIFKVGDNTLLGASGDYADFQ----YL 57
Query: 88 SYNLDLQRMELGEE 101
LD ++ + +E
Sbjct: 58 KRLLD--QLVIDDE 69
>gnl|CDD|163402 TIGR03690, 20S_bact_beta, proteasome, beta subunit, bacterial type.
Members of this family are the beta subunit of the 20S
proteasome as found in Actinobacteria such as
Mycobacterium, Rhodococcus, and Streptomyces. In
Streptomyces, maturation during proteasome assembly was
shown to remove a 53-amino acid propeptide. Most of the
length of the propeptide is not included in this model
[Protein fate, Degradation of proteins, peptides, and
glycopeptides].
Length = 219
Score = 45.1 bits (107), Expect = 4e-06
Identities = 41/166 (24%), Positives = 73/166 (43%), Gaps = 16/166 (9%)
Query: 28 GTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFV 87
GTTI+A+ + GGV++ D R++ G +A+R +K+ + +G+A AI + V
Sbjct: 2 GTTIVALTYPGGVLMAGDRRATQGNMIASRDVEKVYPTDEYSAVGIAGTAG--LAI-ELV 58
Query: 88 S-YNLDLQRMELGE-EPLVYSGAKLFQELVYSYRDSLTAGI-------ICAGWD--RKKG 136
+ ++L+ E E PL G L R +L A + + AG+D G
Sbjct: 59 RLFQVELEHYEKIEGVPLTLDGKA--NRLAAMVRGNLPAAMQGLAVVPLLAGYDLDAGAG 116
Query: 137 GQVYCIPLGGMLMRQKMAMGGSGSTYLYGHMDNQFKENMTKKEAMS 182
GG + GSGS + G + + ++ + +A+
Sbjct: 117 RIFSYDVTGGRYEERGYHAVGSGSVFAKGALKKLYSPDLDEDDALR 162
>gnl|CDD|239722 cd03753, proteasome_alpha_type_5, proteasome_alpha_type_5. The 20S
proteasome, multisubunit proteolytic complex, is the
central enzyme of nonlysosomal protein degradation in
both the cytosol and nucleus. It is composed of 28
subunits arranged as four homoheptameric rings that
stack on top of one another forming an elongated
alpha-beta-beta-alpha cylinder with a central cavity.
The proteasome alpha and beta subunits are members of
the N-terminal nucleophile (Ntn)-hydrolase superfamily.
Their N-terminal threonine residues are exposed as a
nucleophile in peptide bond hydrolysis. Mammals have 7
alpha and 7 beta proteasome subunits while archaea have
one of each.
Length = 213
Score = 44.3 bits (105), Expect = 7e-06
Identities = 37/168 (22%), Positives = 69/168 (41%), Gaps = 22/168 (13%)
Query: 28 GTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAAD-------- 79
G+T I ++ GVV+ + R ++ + V +K+ + D+I C SG AD
Sbjct: 27 GSTAIGIKTKEGVVLAVEKRITSPLMEPSSV-EKIMEIDDHIGCAMSGLIADARTLIDHA 85
Query: 80 -TQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQELVYSYRDSLTAG------IICAGWD 132
+A + +YN + M + E + + + L + ++ AG D
Sbjct: 86 RVEAQNHRFTYN---EPMTV--ESVTQAVSDLALQFGEGDDGKKAMSRPFGVALLIAGVD 140
Query: 133 RKKGGQVYCIPLGGMLMRQKMAMGGSGSTYLYGHMDNQFKENMTKKEA 180
+ G Q++ G R GSGS + ++ ++MT +EA
Sbjct: 141 -ENGPQLFHTDPSGTFTRCDAKAIGSGSEGAQSSLQEKYHKDMTLEEA 187
>gnl|CDD|239728 cd03759, proteasome_beta_type_3, proteasome beta type-3 subunit.
The 20S proteasome, multisubunit proteolytic complex, is
the central enzyme of nonlysosomal protein degradation
in both the cytosol and nucleus. It is composed of 28
subunits arranged as four homoheptameric rings that
stack on top of one another forming an elongated
alpha-beta-beta-alpha cylinder with a central cavity.
The proteasome alpha and beta subunits are members of
the N-terminal nucleophile (Ntn)-hydrolase superfamily.
Their N-terminal threonine residues are exposed as a
nucleophile in peptide bond hydrolysis. Mammals have 7
alpha and 7 beta proteasome subunits while archaea have
one of each.
Length = 195
Score = 43.8 bits (104), Expect = 1e-05
Identities = 35/163 (21%), Positives = 66/163 (40%), Gaps = 12/163 (7%)
Query: 28 GTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFV 87
G ++A+ V I +D R + K+ R+ D +Y +G A D Q ++ +
Sbjct: 3 GGAVVAMAGKDCVAIASDLRLGVQQQTVSTDFQKVFRIGDRLYIGLAGLATDVQTLAQKL 62
Query: 88 SYNLDLQRMELGEEPLVYSGAKLFQELVYSYRDS--LTAGIICAGWDRKKGGQVY----- 140
+ ++L R+ E + + L L+Y R ++ AG D G+ +
Sbjct: 63 RFRVNLYRLREEREIKPKTFSSLISSLLYEKRFGPYFVEPVV-AGLDPD--GKPFICTMD 119
Query: 141 CIPLGGMLMRQKMAMGGSGSTYLYGHMDNQFKENMTKKEAMST 183
I G + + G+ S LYG ++ ++ +M E T
Sbjct: 120 LI--GCPSIPSDFVVSGTASEQLYGMCESLWRPDMEPDELFET 160
>gnl|CDD|239725 cd03756, proteasome_alpha_archeal, proteasome_alpha_archeal. The
20S proteasome, multisubunit proteolytic complex, is the
central enzyme of nonlysosomal protein degradation in
both the cytosol and nucleus. It is composed of 28
subunits arranged as four homoheptameric rings that
stack on top of one another forming an elongated
alpha-beta-beta-alpha cylinder with a central cavity.
The proteasome alpha and beta subunits are members of
the N-terminal nucleophile (Ntn)-hydrolase superfamily.
Their N-terminal threonine residues are exposed as a
nucleophile in peptide bond hydrolysis. Mammals have 7
alpha and 7 beta proteasome subunits while archaea have
one of each.
Length = 211
Score = 42.7 bits (101), Expect = 3e-05
Identities = 38/159 (23%), Positives = 67/159 (42%), Gaps = 7/159 (4%)
Query: 28 GTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFV 87
GTT + ++ GVV+ D R T V +K+ ++ D++ SG AD + + D
Sbjct: 28 GTTALGIKCKEGVVLAVDKR-ITSKLVEPESIEKIYKIDDHVGAATSGLVADARVLIDRA 86
Query: 88 SYNLDLQRMELGEEPLVYSGAKLFQELVYSYRDS-----LTAGIICAGWDRKKGGQVYCI 142
+ R+ GE V K +L Y ++ AG D G +++
Sbjct: 87 RVEAQIHRLTYGEPIDVEVLVKKICDLKQQYTQHGGVRPFGVALLIAGVD-DGGPRLFET 145
Query: 143 PLGGMLMRQKMAMGGSGSTYLYGHMDNQFKENMTKKEAM 181
G K GSG + ++ ++KE+M+ +EA+
Sbjct: 146 DPSGAYNEYKATAIGSGRQAVTEFLEKEYKEDMSLEEAI 184
>gnl|CDD|163366 TIGR03633, arc_protsome_A, proteasome endopeptidase complex,
archaeal, alpha subunit. This protein family describes
the archaeal proteasome alpha subunit, homologous to
both the beta subunit and to the alpha and beta subunits
of eukaryotic proteasome subunits. This family is
universal in the first 29 complete archaeal genomes but
occasionally is duplicated [Protein fate, Degradation of
proteins, peptides, and glycopeptides].
Length = 224
Score = 38.8 bits (91), Expect = 5e-04
Identities = 39/160 (24%), Positives = 74/160 (46%), Gaps = 9/160 (5%)
Query: 28 GTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFV 87
GTT + ++ GVV+ D R ++ + + +K+ ++ D+I SG AD + + D
Sbjct: 29 GTTAVGIKTKDGVVLAVDKRITSKLVEPSSI-EKIFKIDDHIGAATSGLVADARVLIDRA 87
Query: 88 SYNLDLQRMELGEEPLVYSGAKLFQELVYSY------RDSLTAGIICAGWDRKKGGQVYC 141
+ R+ GE V + AK +L Y R A +I AG D G +++
Sbjct: 88 RIEAQINRLTYGEPIDVETLAKKICDLKQQYTQHGGVRPFGVALLI-AGVDD-GGPRLFE 145
Query: 142 IPLGGMLMRQKMAMGGSGSTYLYGHMDNQFKENMTKKEAM 181
G L+ K G+G + ++ +++E+++ EA+
Sbjct: 146 TDPSGALLEYKATAIGAGRQAVTEFLEKEYREDLSLDEAI 185
>gnl|CDD|238894 cd01913, protease_HslV, Protease HslV and the ATPase/chaperone
HslU are part of an ATP-dependent proteolytic system
that is the prokaryotic homolog of the proteasome. HslV
is a dimer of hexamers (a dodecamer) that forms a
central proteolytic chamber with active sites on the
interior walls of the cavity. HslV shares significant
sequence and structural similarity with the proteasomal
beta-subunit and both are members of the Ntn-family of
hydrolases. HslV has a nucleophilic threonine residue
at its N-terminus that is exposed after processing of
the propeptide and is directly involved in active site
catalysis.
Length = 171
Score = 36.4 bits (85), Expect = 0.003
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 29 TTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRV-TDNIYCCRSGSAAD 79
TTI+AV +G VVI D + + G V A K+ R+ + +GS AD
Sbjct: 1 TTILAVRKNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVIAGFAGSTAD 52
>gnl|CDD|227692 COG5405, HslV, ATP-dependent protease HslVU (ClpYQ), peptidase
subunit [Posttranslational modification, protein
turnover, chaperones].
Length = 178
Score = 35.0 bits (81), Expect = 0.011
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 28 GTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDN-IYCCRSGSAAD 79
TTI+AV +G VVI D + + G V A K+ R+ + + +GS AD
Sbjct: 4 MTTIVAVRKNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTAD 56
>gnl|CDD|211862 TIGR03692, ATP_dep_HslV, ATP-dependent protease HslVU, peptidase
subunit. The ATP-dependent protease HslVU, a complex
of hexameric HslU active as a protein-unfolding ATPase
and dodecameric HslV, the catalytic threonine protease
[Protein fate, Degradation of proteins, peptides, and
glycopeptides].
Length = 171
Score = 34.4 bits (80), Expect = 0.016
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 29 TTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRV-TDNIYCCRSGSAAD 79
TTI+AV +G VVI D + + G V A K+ R+ + +GS AD
Sbjct: 1 TTILAVRRNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTAD 52
>gnl|CDD|239721 cd03752, proteasome_alpha_type_4, proteasome_alpha_type_4. The 20S
proteasome, multisubunit proteolytic complex, is the
central enzyme of nonlysosomal protein degradation in
both the cytosol and nucleus. It is composed of 28
subunits arranged as four homoheptameric rings that
stack on top of one another forming an elongated
alpha-beta-beta-alpha cylinder with a central cavity.
The proteasome alpha and beta subunits are members of
the N-terminal nucleophile (Ntn)-hydrolase superfamily.
Their N-terminal threonine residues are exposed as a
nucleophile in peptide bond hydrolysis. Mammals have 7
alpha and 7 beta proteasome subunits while archaea have
one of each.
Length = 213
Score = 33.1 bits (76), Expect = 0.047
Identities = 35/164 (21%), Positives = 69/164 (42%), Gaps = 19/164 (11%)
Query: 30 TIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVSY 89
T + + G+V+ A+ + ++ + ++K+ ++ D+I C +G +D + ++
Sbjct: 31 TCLGILAKDGIVLAAEKKVTSKLLDQSFSSEKIYKIDDHIACAVAGITSDANILINYA-- 88
Query: 90 NLDLQRMEL--GEEPLVYSGAKLFQELVYSYRDSLT---------AGIICAGWDRKKGGQ 138
L QR E V +L Q L + T + AGWD+ G Q
Sbjct: 89 RLIAQRYLYSYQEPIPV---EQLVQRLC-DIKQGYTQYGGLRPFGVSFLYAGWDKHYGFQ 144
Query: 139 VY-CIPLGGMLMRQKMAMGGSGSTYLYGHMDNQFKENMTKKEAM 181
+Y P G + A+G + + +K++MT +EA+
Sbjct: 145 LYQSDPSGNYSGWKATAIGNNNQA-AQSLLKQDYKDDMTLEEAL 187
>gnl|CDD|235477 PRK05456, PRK05456, ATP-dependent protease subunit HslV;
Provisional.
Length = 172
Score = 31.6 bits (73), Expect = 0.12
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 28 GTTIIAVEFDGGVVIGAD 45
GTTI+AV +G V I D
Sbjct: 1 GTTILAVRRNGKVAIAGD 18
>gnl|CDD|235192 PRK03996, PRK03996, proteasome subunit alpha; Provisional.
Length = 241
Score = 31.7 bits (73), Expect = 0.13
Identities = 37/160 (23%), Positives = 71/160 (44%), Gaps = 9/160 (5%)
Query: 28 GTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFV 87
GTT + V+ GVV+ D R ++ + + +K+ ++ D+I +G AD + + D
Sbjct: 36 GTTAVGVKTKDGVVLAVDKRITSPLIEPSSI-EKIFKIDDHIGAASAGLVADARVLIDRA 94
Query: 88 SYNLDLQRMELGEEPLVYSGAKLFQELVYSY------RDSLTAGIICAGWDRKKGGQVYC 141
+ R+ GE V + K + Y R A +I AG D G +++
Sbjct: 95 RVEAQINRLTYGEPIGVETLTKKICDHKQQYTQHGGVRPFGVALLI-AGVDD-GGPRLFE 152
Query: 142 IPLGGMLMRQKMAMGGSGSTYLYGHMDNQFKENMTKKEAM 181
G + K G+G + ++ +KE+++ +EA+
Sbjct: 153 TDPSGAYLEYKATAIGAGRDTVMEFLEKNYKEDLSLEEAI 192
>gnl|CDD|239723 cd03754, proteasome_alpha_type_6, proteasome_alpha_type_6. The 20S
proteasome, multisubunit proteolytic complex, is the
central enzyme of nonlysosomal protein degradation in
both the cytosol and nucleus. It is composed of 28
subunits arranged as four homoheptameric rings that
stack on top of one another forming an elongated
alpha-beta-beta-alpha cylinder with a central cavity.
The proteasome alpha and beta subunits are members of
the N-terminal nucleophile (Ntn)-hydrolase superfamily.
Their N-terminal threonine residues are exposed as a
nucleophile in peptide bond hydrolysis. Mammals have 7
alpha and 7 beta proteasome subunits while archaea have
one of each.
Length = 215
Score = 28.7 bits (65), Expect = 1.5
Identities = 30/112 (26%), Positives = 44/112 (39%), Gaps = 16/112 (14%)
Query: 47 RSSTGAYVAN--RVADKLT---------RVTDNIYCCRSGSAADTQAISDFVSYNLDLQR 95
R A V +V DKL R+TD I C +G AD+++ Y +
Sbjct: 36 RGKDCAVVVTQKKVPDKLIDPSTVTHLFRITDEIGCVMTGMIADSRSQVQRARYEAAEFK 95
Query: 96 MELGEEPLVYSGAKLFQEL--VYSYRDS---LTAGIICAGWDRKKGGQVYCI 142
+ G E V AK ++ VY+ L +I G D + G Q+Y
Sbjct: 96 YKYGYEMPVDVLAKRIADINQVYTQHAYMRPLGVSMILIGIDEELGPQLYKC 147
>gnl|CDD|217656 pfam03644, Glyco_hydro_85, Glycosyl hydrolase family 85. Family of
endo-beta-N-acetylglucosaminidases. These enzymes work
on a broad spectrum of substrates.
Length = 302
Score = 28.9 bits (65), Expect = 1.6
Identities = 27/88 (30%), Positives = 37/88 (42%), Gaps = 21/88 (23%)
Query: 17 APDWLTAKHSCGT----TIIAVEFDGGVVIGAD--SRSSTGAYVANRVADKLTRVTD--- 67
PDW+ A H G TII E+DGGV + + G++ ADKL +
Sbjct: 43 PPDWINAAHRNGVPVLGTII-FEWDGGVEWLEELLKQDEEGSF---PYADKLVELAKYYG 98
Query: 68 ------NIYCCRSGSAADTQAISDFVSY 89
NI G+ AD + F+SY
Sbjct: 99 FDGWLINIETTLDGTKADR--LRPFLSY 124
>gnl|CDD|216892 pfam02133, Transp_cyt_pur, Permease for cytosine/purines, uracil,
thiamine, allantoin.
Length = 438
Score = 28.9 bits (65), Expect = 1.7
Identities = 7/32 (21%), Positives = 12/32 (37%)
Query: 134 KKGGQVYCIPLGGMLMRQKMAMGGSGSTYLYG 165
Q+ +P G L +G + + YG
Sbjct: 232 SSKIQLVAVPGGFTLFALIGILGAAAAYAAYG 263
>gnl|CDD|181292 PRK08208, PRK08208, coproporphyrinogen III oxidase; Validated.
Length = 430
Score = 27.7 bits (62), Expect = 4.1
Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 7/38 (18%)
Query: 15 VEAPDWLTAKHSCGTTIIAVEFDGGVVIGADSRSSTGA 52
+APD +SC T DG + +G +RS TG
Sbjct: 276 NDAPDKGAPAYSCQT-------DGMLGLGCGARSYTGN 306
>gnl|CDD|130607 TIGR01544, HAD-SF-IE, haloacid dehalogenase superfamily, subfamily
IE hydrolase, TIGR01544. This model represents a small
group of metazoan sequences. The sequences from mouse
are annotated as Pyrimidine 5'-nucleotidases, aparrently
in reference to HSPC233, the human homolog. However, no
such annotation can currently be found for this gene.
This group of sequences was found during searches for
members of the haloacid dehalogenase (HAD) superfamily.
All of the conserved catalytic motifs are found. The
placement of the variable domain between motifs 1 and 2
indicates membership in subfamily I of the superfamily,
but these sequences are sufficiently different from any
of the branches (IA, TIGR01493, TIGR01509, TIGR01549;
IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF
TIGR01545) of that subfamily as to constitute a separate
branch to now be called IE. Considering that the closest
identifiable hit outside of the noise range is to a
phosphoserine phosphatase, this group may be considered
to be most closely allied to subfamily IB.
Length = 277
Score = 26.4 bits (58), Expect = 8.6
Identities = 19/44 (43%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 57 RVADKLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGE 100
R+AD TRV + I G AA Q ISDF Y L E G+
Sbjct: 1 RMADP-TRVEEIICGLVKGGAAKLQIISDF-DYTLSRFSYEDGK 42
>gnl|CDD|149922 pfam09015, NgoMIV_restric, NgoMIV restriction enzyme. Members of
this family are prokaryotic DNA restriction enzymes,
exhibiting an alpha/beta structure, with a central
region comprising a mixed six-stranded beta-sheet with
alpha-helices on each side. A long 'arm' protrudes out
of the core of the domain between strands beta2 and
beta3 and is mainly involved in the tetramerisation
interface of the protein. These restriction enzymes
recognise the double-stranded sequence GCCGGC and
cleave after G-1.
Length = 277
Score = 26.3 bits (58), Expect = 9.0
Identities = 14/35 (40%), Positives = 18/35 (51%)
Query: 28 GTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKL 62
G +I G VV ADS S+T +A +AD L
Sbjct: 8 GILLITNNAGGQVVSNADSSSTTSRNIAKGIADLL 42
>gnl|CDD|179673 PRK03910, PRK03910, D-cysteine desulfhydrase; Validated.
Length = 331
Score = 26.3 bits (59), Expect = 9.4
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 133 RKKGGQVYCIPLGG 146
R +G + Y IP+GG
Sbjct: 144 RAQGRRPYVIPVGG 157
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.133 0.407
Gapped
Lambda K H
0.267 0.0650 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,136,411
Number of extensions: 813960
Number of successful extensions: 741
Number of sequences better than 10.0: 1
Number of HSP's gapped: 712
Number of HSP's successfully gapped: 41
Length of query: 184
Length of database: 10,937,602
Length adjustment: 91
Effective length of query: 93
Effective length of database: 6,901,388
Effective search space: 641829084
Effective search space used: 641829084
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.5 bits)