RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2074
(184 letters)
>1iru_H 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_N* 3une_N
Length = 205
Score = 214 bits (547), Expect = 1e-71
Identities = 93/153 (60%), Positives = 126/153 (82%)
Query: 29 TTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVS 88
TTI+AV+FDGGVV+GADSR++TG+Y+ANRV DKLT + D I+CCRSGSAADTQA++D V+
Sbjct: 1 TTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVT 60
Query: 89 YNLDLQRMELGEEPLVYSGAKLFQELVYSYRDSLTAGIICAGWDRKKGGQVYCIPLGGML 148
Y L +EL E PLV++ A LF+E+ Y YR+ L AGII AGWD ++GGQVY +P+GGM+
Sbjct: 61 YQLGFHSIELNEPPLVHTAASLFKEMCYRYREDLMAGIIIAGWDPQEGGQVYSVPMGGMM 120
Query: 149 MRQKMAMGGSGSTYLYGHMDNQFKENMTKKEAM 181
+RQ A+GGSGS+Y+YG++D ++E MTK+E +
Sbjct: 121 VRQSFAIGGSGSSYIYGYVDATYREGMTKEECL 153
>1ryp_H 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 3nzj_N*
3nzw_N* 3nzx_N* 1vsy_H 3l5q_B 1g65_N* 1fnt_H 1g0u_N*
1jd2_N* 1z7q_H 2f16_N* 2fak_N* 2fny_N* 2gpl_N* 2zcy_N*
3bdm_N* 3d29_N* 3dy3_N* 3dy4_N* 3e47_N* ...
Length = 205
Score = 209 bits (534), Expect = 1e-69
Identities = 88/159 (55%), Positives = 118/159 (74%), Gaps = 1/159 (0%)
Query: 23 AKHSCGTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQA 82
+ S G +I+AV F GV++GADSR++TGAY+ANRV DKLTRV D I+CCRSGSAADTQA
Sbjct: 4 GEVSLGASIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHDKIWCCRSGSAADTQA 63
Query: 83 ISDFVSYNLDLQRMELGEEPLVYSGAKLFQELVYSYRDSLTAGIICAGWDRKKGGQVYCI 142
I+D V Y+L+L + G P + A +F+EL Y +D+LTAGII AG+D K G+VY I
Sbjct: 64 IADIVQYHLELYTSQYG-TPSTETAASVFKELCYENKDNLTAGIIVAGYDDKNKGEVYTI 122
Query: 143 PLGGMLMRQKMAMGGSGSTYLYGHMDNQFKENMTKKEAM 181
PLGG + + A+ GSGST++YG+ D F+ENM+K+E +
Sbjct: 123 PLGGSVHKLPYAIAGSGSTFIYGYCDKNFRENMSKEETV 161
>3nzj_K Proteasome component PRE2; ubiquitin, protein degradation,
N-terminal nucleophilic HYDR 19S regulatory particle;
HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB:
3nzw_K* 3nzx_K*
Length = 287
Score = 209 bits (534), Expect = 1e-68
Identities = 46/171 (26%), Positives = 87/171 (50%), Gaps = 1/171 (0%)
Query: 12 HGGVEAPDWLTAKHSCGTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYC 71
H K + GTT +A F GG+++ DSR++ G +VA++ K+ + +
Sbjct: 59 HTDDSRNPDCKIKIAHGTTTLAFRFQGGIIVAVDSRATAGNWVASQTVKKVIEINPFLLG 118
Query: 72 CRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQELVYSYRDS-LTAGIICAG 130
+G AAD Q ++ L + E V + +K+ LVY Y+ + L+ G + G
Sbjct: 119 TMAGGAADCQFWETWLGSQCRLHELREKERISVAAASKILSNLVYQYKGAGLSMGTMICG 178
Query: 131 WDRKKGGQVYCIPLGGMLMRQKMAMGGSGSTYLYGHMDNQFKENMTKKEAM 181
+ RK+G +Y + G ++ + GSG T+ YG +D+ +K +++ ++A+
Sbjct: 179 YTRKEGPTIYYVDSDGTRLKGDIFCVGSGQTFAYGVLDSNYKWDLSVEDAL 229
>3unf_H Proteasome subunit beta type-10; antigen presentation, drug
development, protein degradation, hydrolase-hydrolase
inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB:
3unh_H
Length = 234
Score = 207 bits (529), Expect = 1e-68
Identities = 44/153 (28%), Positives = 82/153 (53%), Gaps = 1/153 (0%)
Query: 29 TTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVS 88
TTI + F GV++GAD+R++ + VA++ +K+ + IYCC +G AADT+ + +
Sbjct: 1 TTIAGLVFRDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADTEMTTRMAA 60
Query: 89 YNLDLQRMELGEEPLVYSGAKLFQELVYSYRDSLTAGIICAGWDRKKGGQVYCIPLGGML 148
++L + G EP V + ++ ++ ++ Y+ + A ++ G D G Q+Y + G
Sbjct: 61 SKMELHALSTGREPRVATVTRILRQTLFRYQGHVGASLVVGGVD-LNGPQLYEVHPHGSY 119
Query: 149 MRQKMAMGGSGSTYLYGHMDNQFKENMTKKEAM 181
R GSG ++++F+ NMT + A
Sbjct: 120 SRLPFTALGSGQGAAVALLEDRFQPNMTLEAAQ 152
>3unf_N Proteasome subunit beta type-9; antigen presentation, drug
development, protein degradation, hydrolase-hydrolase
inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB:
3unh_N
Length = 199
Score = 204 bits (522), Expect = 7e-68
Identities = 81/153 (52%), Positives = 108/153 (70%), Gaps = 1/153 (0%)
Query: 29 TTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVS 88
TTI+AVEFDGGVV+G+DSR S G V NRV DKL+ + I+C SGSAAD QAI+D +
Sbjct: 1 TTIMAVEFDGGVVVGSDSRVSAGTAVVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAA 60
Query: 89 YNLDLQRMELGEEPLVYSGAKLFQELVYSYRDSLTAGIICAGWDRKKGGQVYCIPLGGML 148
Y L+L +EL E PLV + A + + + Y YR+ L A +I AGWD+++GGQVY GGML
Sbjct: 61 YQLELHGLELEEPPLVLAAANVVKNISYKYREDLLAHLIVAGWDQREGGQVYGTM-GGML 119
Query: 149 MRQKMAMGGSGSTYLYGHMDNQFKENMTKKEAM 181
+RQ +GGSGS+Y+YG++D +K MT +E
Sbjct: 120 IRQPFTIGGSGSSYIYGYVDAAYKPGMTPEECR 152
>3nzj_H Proteasome component PUP1; ubiquitin, protein degradation,
N-terminal nucleophilic HYDR 19S regulatory particle;
HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB:
3nzw_H* 3nzx_H*
Length = 261
Score = 205 bits (524), Expect = 2e-67
Identities = 53/156 (33%), Positives = 92/156 (58%), Gaps = 1/156 (0%)
Query: 26 SCGTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAISD 85
S GTTI+ V+F+ GVVI AD+RS+ G VA++ KL R++ I+C +G+AADT+A++
Sbjct: 27 STGTTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQ 86
Query: 86 FVSYNLDLQRMELGEEPLVYSGAKLFQELVYSYRDSLTAGIICAGWDRKKGGQVYCIPLG 145
+ N++L + EP V S ++ ++ ++ Y+ + A +I AG D G ++ I
Sbjct: 87 LIGSNIELHSLYTSREPRVVSALQMLKQHLFKYQGHIGAYLIVAGVD-PTGSHLFSIHAH 145
Query: 146 GMLMRQKMAMGGSGSTYLYGHMDNQFKENMTKKEAM 181
G GSGS +++ +K+++TK+EA+
Sbjct: 146 GSTDVGYYLSLGSGSLAAMAVLESHWKQDLTKEEAI 181
>1iru_I 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_H* 3une_H
Length = 234
Score = 204 bits (520), Expect = 3e-67
Identities = 48/153 (31%), Positives = 85/153 (55%), Gaps = 1/153 (0%)
Query: 29 TTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVS 88
TTI V + G+V+GAD+R++ G VA++ K+ ++ NIYCC +G+AADT + +S
Sbjct: 1 TTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLIS 60
Query: 89 YNLDLQRMELGEEPLVYSGAKLFQELVYSYRDSLTAGIICAGWDRKKGGQVYCIPLGGML 148
NL+L + G P V + ++ +++++ YR + A ++ G D G +Y I G
Sbjct: 61 SNLELHSLSTGRLPRVVTANRMLKQMLFRYRGYIGAALVLGGVD-VTGPHLYSIYPHGST 119
Query: 149 MRQKMAMGGSGSTYLYGHMDNQFKENMTKKEAM 181
+ GSGS +++F+ +M ++EA
Sbjct: 120 DKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEAK 152
>1ryp_I 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1g0u_H*
1jd2_H* 1g65_H 1vsy_I 1z7q_I 2f16_H* 2fak_H* 2fny_H*
2gpl_H* 3d29_H* 3dy3_H* 3dy4_H* 3e47_H* 3gpj_H* 3gpt_H*
3gpw_H* 3hye_H* 3l5q_M 3mg0_H* 3mg4_H* ...
Length = 222
Score = 203 bits (519), Expect = 4e-67
Identities = 51/153 (33%), Positives = 90/153 (58%), Gaps = 1/153 (0%)
Query: 29 TTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVS 88
TTI+ V+F+ GVVI AD+RS+ G VA++ KL R++ I+C +G+AADT+A++ +
Sbjct: 1 TTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIG 60
Query: 89 YNLDLQRMELGEEPLVYSGAKLFQELVYSYRDSLTAGIICAGWDRKKGGQVYCIPLGGML 148
N++L + EP V S ++ ++ ++ Y+ + A +I AG D G ++ I G
Sbjct: 61 SNIELHSLYTSREPRVVSALQMLKQHLFKYQGHIGAYLIVAGVD-PTGSHLFSIHAHGST 119
Query: 149 MRQKMAMGGSGSTYLYGHMDNQFKENMTKKEAM 181
GSGS +++ +K+++TK+EA+
Sbjct: 120 DVGYYLSLGSGSLAAMAVLESHWKQDLTKEEAI 152
>1ryp_L 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_L
1vsy_L 1z7q_L 3l5q_P 1g65_K* 1g0u_K* 1jd2_K* 2f16_K*
2fak_K* 2fny_K* 2gpl_K* 2zcy_K* 3bdm_K* 3d29_K* 3dy3_K*
3dy4_K* 3e47_K* 3gpj_K* 3gpt_K* 3gpw_K* ...
Length = 212
Score = 202 bits (516), Expect = 8e-67
Identities = 42/154 (27%), Positives = 82/154 (53%), Gaps = 1/154 (0%)
Query: 29 TTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVS 88
TT +A F GG+++ DSR++ G +VA++ ++ + + +G AAD Q ++
Sbjct: 1 TTTLAFRFQGGIIVAVDSRATAGNWVASQTVKRVIEINPFLLGTMAGGAADCQFWETWLG 60
Query: 89 YNLDLQRMELGEEPLVYSGAKLFQELVYSYRD-SLTAGIICAGWDRKKGGQVYCIPLGGM 147
L + E V + +K+ LVY Y+ L+ G + G+ RK+G +Y + G
Sbjct: 61 SQCRLHELREKERISVAAASKILSNLVYQYKGAGLSMGTMICGYTRKEGPTIYYVDSDGT 120
Query: 148 LMRQKMAMGGSGSTYLYGHMDNQFKENMTKKEAM 181
++ + GSG T+ YG +D+ +K +++ ++A+
Sbjct: 121 RLKGDIFCVGSGQTFAYGVLDSNYKWDLSVEDAL 154
>1yar_H Proteasome beta subunit; proteasome 20S, PA26 proteasome activator
11S, hydrolase-HYD activator complex; 1.90A
{Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_H
1yau_H 3ipm_H 1pma_B 3jrm_H 3c92_H 3c91_H 3jse_H 3jtl_H
Length = 217
Score = 197 bits (503), Expect = 7e-65
Identities = 32/155 (20%), Positives = 67/155 (43%), Gaps = 3/155 (1%)
Query: 28 GTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFV 87
GTT + + V++ + R + ++ ++ KL ++ +G D Q + ++
Sbjct: 8 GTTTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQVLVRYM 67
Query: 88 SYNLDLQRMELGEEPLVYSGAKLFQELVYSYRD-SLTAGIICAGWDRKKGGQVYCIPLGG 146
L+L R++ + + A L ++ + ++ G D V+ I G
Sbjct: 68 KAELELYRLQRRVNMPIEAVATLLSNMLNQVKYMPYMVQLLVGGID--TAPHVFSIDAAG 125
Query: 147 MLMRQKMAMGGSGSTYLYGHMDNQFKENMTKKEAM 181
+ A GSGS ++YG +++Q+ E MT E +
Sbjct: 126 GSVEDIYASTGSGSPFVYGVLESQYSEKMTVDEGV 160
>3h4p_A Proteasome subunit alpha; core particle, cytoplasm, hydrolase,
protease, threonine protease; 4.10A {Methanocaldococcus
jannaschii}
Length = 264
Score = 197 bits (502), Expect = 1e-64
Identities = 10/155 (6%), Positives = 25/155 (16%), Gaps = 2/155 (1%)
Query: 29 TTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVS 88
+ + V Y + + R T I
Sbjct: 2 SHMQMVPPSAYDRAITVFSPEGRLYQVEYAREAVRRGTTAIGIACKDGVVLAVDRRITSK 61
Query: 89 YNLDLQRMELGEEPLVYSGAKLFQELVYSYRDS-LTAGIICAGWDRKKGGQVYCI-PLGG 146
++ + + A + + +
Sbjct: 62 LVKIRSIEKIFQIDDHVAAATSGLVADARVLIDRARLEAQIYRLTYGEEISIEMLAKKIC 121
Query: 147 MLMRQKMAMGGSGSTYLYGHMDNQFKENMTKKEAM 181
+ + GG + + K E
Sbjct: 122 DIKQAYTQHGGVRPFGVSLLIAGIDKNEARLFETD 156
>1iru_L 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_K* 3une_K 3unf_K* 3unh_K
Length = 204
Score = 195 bits (499), Expect = 2e-64
Identities = 45/154 (29%), Positives = 77/154 (50%), Gaps = 2/154 (1%)
Query: 29 TTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVS 88
TT +A +F GV++ ADSR++ GAY+A++ K+ + + +G AAD ++
Sbjct: 1 TTTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLA 60
Query: 89 YNLDLQRMELGEEPLVYSGAKLFQELVYSYRD-SLTAGIICAGWDRKKGGQVYCIPLGGM 147
+ + E V + +KL +VY Y+ L+ G + GWD K+G +Y + G
Sbjct: 61 RQCRIYELRNKERISVAAASKLLANMVYQYKGMGLSMGTMICGWD-KRGPGLYYVDSEGN 119
Query: 148 LMRQKMAMGGSGSTYLYGHMDNQFKENMTKKEAM 181
+ GSGS Y YG MD + ++ ++A
Sbjct: 120 RISGATFSVGSGSVYAYGVMDRGYSYDLEVEQAY 153
>1j2q_H Proteasome beta subunit; ubiquitin, CP, hydrolase; HET: CIB; 2.83A
{Archaeoglobus fulgidus} SCOP: d.153.1.4
Length = 202
Score = 195 bits (498), Expect = 3e-64
Identities = 41/157 (26%), Positives = 78/157 (49%), Gaps = 3/157 (1%)
Query: 29 TTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVS 88
TT + + GVV+ + R++ G ++A++ A K+ ++ D + +GS D Q ++ +
Sbjct: 1 TTTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTTAGSVGDAQFLARIIK 60
Query: 89 YNLDLQRMELGEEPLVYSGAKLFQELVYSYRD-SLTAGIICAGWDRKKGGQVYCI-PLGG 146
+L + +P V + A L L+ SYR ++ G D +G +Y I P+GG
Sbjct: 61 IEANLYEIRRERKPTVRAIATLTSNLLNSYRYFPYLVQLLIGGID-SEGKSIYSIDPIGG 119
Query: 147 MLMRQKMAMGGSGSTYLYGHMDNQFKENMTKKEAMST 183
+ + + GSGS YG ++++F + EA+
Sbjct: 120 AIEEKDIVATGSGSLTAYGVLEDRFTPEIGVDEAVEL 156
>1iru_J 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_I* 3une_I 3unf_I* 3unh_I
Length = 205
Score = 193 bits (494), Expect = 1e-63
Identities = 33/163 (20%), Positives = 67/163 (41%), Gaps = 3/163 (1%)
Query: 24 KHSCGTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAI 83
G ++A++ V I AD R A + K+ + D +Y +G A D Q +
Sbjct: 4 MSYNGGAVMAMKGKNCVAIAADRRFGIQAQLVTTDFQKIFPMGDRLYIGLAGLATDVQTV 63
Query: 84 SDFVSYNLDLQRMELGEEPLVYSGAKLFQELVYSYR-DSLTAGIICAGWDRKKGGQ-VYC 141
+ + + L+L ++ G + Y+ + L+Y R + AG D K +
Sbjct: 64 AQRLKFRLNLYELKEGRQIKPYTLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPFICS 123
Query: 142 I-PLGGMLMRQKMAMGGSGSTYLYGHMDNQFKENMTKKEAMST 183
+ +G ++ + G+ + +YG ++ ++ NM T
Sbjct: 124 LDLIGCPMVTDDFVVSGTCAEQMYGMCESLWEPNMDPDHLFET 166
>1iru_M 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_L* 3une_L 3unf_L* 3unh_L
Length = 213
Score = 192 bits (491), Expect = 5e-63
Identities = 38/166 (22%), Positives = 63/166 (37%), Gaps = 10/166 (6%)
Query: 28 GTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFV 87
G TI+A+ + ++ +D+R S G + R + K ++TD SG D ++ +
Sbjct: 9 GGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKII 68
Query: 88 SYNLDLQRMELGEEPLVYSGAKLFQELVYSYR-DSLTAGIICAGWDRKKGGQVYCIPLGG 146
L + + + + A + ++YS R I G D + G VY G
Sbjct: 69 EARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEEGKGAVYSFDPVG 128
Query: 147 MLMRQKMAMGGSGSTYLYGHMDNQF---------KENMTKKEAMST 183
R GGS S L +DNQ ++ AM
Sbjct: 129 SYQRDSFKAGGSASAMLQPLLDNQVGFKNMQNVEHVPLSLDRAMRL 174
>1iru_K 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_J* 3une_J 3unf_J* 3unh_J
Length = 201
Score = 189 bits (483), Expect = 5e-62
Identities = 28/156 (17%), Positives = 66/156 (42%), Gaps = 3/156 (1%)
Query: 29 TTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVS 88
+I ++ V++ +D +++ DK+ ++++ I G A DT ++++
Sbjct: 2 EYLIGIQGPDYVLVASDRVAASNIVQMKDDHDKMFKMSEKILLLCVGEAGDTVQFAEYIQ 61
Query: 89 YNLDLQRMELGEEPLVYSGAKLFQELVY---SYRDSLTAGIICAGWDRKKGGQVYCIPLG 145
N+ L +M G E + A + + R ++ AG+D +G +Y +
Sbjct: 62 KNVQLYKMRNGYELSPTAAANFTRRNLADCLRSRTPYHVNLLLAGYDEHEGPALYYMDYL 121
Query: 146 GMLMRQKMAMGGSGSTYLYGHMDNQFKENMTKKEAM 181
L + A G G+ +D + ++++ A+
Sbjct: 122 AALAKAPFAAHGYGAFLTLSILDRYYTPTISRERAV 157
>1ryp_K 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_K
1g0u_J* 1jd2_J* 1g65_J 1vsy_K 1z7q_K 2f16_J* 2fak_J*
2fny_J* 2gpl_J* 2zcy_J* 3bdm_J* 3d29_J* 3dy3_J* 3dy4_J*
3e47_J* 3gpj_J* 3gpt_J* 3gpw_J* 3hye_J* ...
Length = 198
Score = 189 bits (482), Expect = 7e-62
Identities = 27/157 (17%), Positives = 64/157 (40%), Gaps = 4/157 (2%)
Query: 29 TTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVS 88
I+ + V++ + + G V DK +++ + +G A DT ++++
Sbjct: 2 DIILGIRVQDSVILASSKAVTRGISVLKDSDDKTRQLSPHTLMSFAGEAGDTVQFAEYIQ 61
Query: 89 YNLDLQRMELGEEPLVYSGAKLFQELVY---SYRDSLTAGIICAGWDRKKGG-QVYCIPL 144
N+ L + E + + ++ + R ++ G+D+KK ++Y I
Sbjct: 62 ANIQLYSIREDYELSPQAVSSFVRQELAKSIRSRRPYQVNVLIGGYDKKKNKPELYQIDY 121
Query: 145 GGMLMRQKMAMGGSGSTYLYGHMDNQFKENMTKKEAM 181
G + G Y + +D+ ++ +MT +E +
Sbjct: 122 LGTKVELPYGAHGYSGFYTFSLLDHHYRPDMTTEEGL 158
>1ryp_M 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_M*
1jd2_L* 1g65_L 1vsy_M 1z7q_M 2f16_L* 2fak_L* 2fny_L*
2gpl_L* 3d29_L* 3dy3_L* 3dy4_L* 3e47_L* 3gpj_L* 3gpt_L*
3gpw_L* 3hye_L* 3l5q_Q 3mg0_L* 3mg4_L* ...
Length = 222
Score = 184 bits (468), Expect = 2e-59
Identities = 39/175 (22%), Positives = 70/175 (40%), Gaps = 19/175 (10%)
Query: 28 GTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFV 87
G TI+ + + V+ D+R+ T + +R K+ DNI +G AAD A+
Sbjct: 9 GGTILGIAGEDFAVLAGDTRNITDYSINSRYEPKVFDCGDNIVMSANGFAADGDALVKRF 68
Query: 88 SYNLDLQRMELGEEPL-VYSGAKLFQELVYSYR-DSLTAGIICAGWDRKKGGQVYCIPLG 145
++ + ++ L + S A+ Q L+Y R I AG D G VY
Sbjct: 69 KNSVKWYHFDHNDKKLSINSAARNIQHLLYGKRFFPYYVHTIIAGLDEDGKGAVYSFDPV 128
Query: 146 GMLMRQKMAMGGSGSTYLYGHMDNQFK-----------------ENMTKKEAMST 183
G R++ GG+ ++ + +DNQ + ++ +E +
Sbjct: 129 GSYEREQCRAGGAAASLIMPFLDNQVNFKNQYEPGTNGKVKKPLKYLSVEEVIKL 183
>1iru_N 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_M* 3une_M 3unf_M* 3unh_M
Length = 219
Score = 181 bits (462), Expect = 2e-58
Identities = 32/160 (20%), Positives = 64/160 (40%), Gaps = 7/160 (4%)
Query: 28 GTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFV 87
GT+++ V+F+GGVVI AD S G+ R ++ RV ++ SG AD Q + +
Sbjct: 8 GTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADFQYLKQVL 67
Query: 88 SYNLDLQRM-ELGEEPLVYSGAKLFQELVYSYR---DSLTAGIICAGWDRKKGGQVYCIP 143
+ + + G + +YS R + L ++ G+ + +
Sbjct: 68 GQMVIDEELLGDGHSYSPRAIHSWLTRAMYSRRSKMNPLWNTMVIGGYA-DGESFLGYVD 126
Query: 144 LGGMLMRQKMAMGGSGSTYLYGHMDNQFKE--NMTKKEAM 181
+ G+ G G+ + ++ +++ EA
Sbjct: 127 MLGVAYEAPSLATGYGAYLAQPLLREVLEKQPVLSQTEAR 166
>1ryp_N 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_N*
1jd2_M* 1g65_M 1vsy_N 1z7q_N 2f16_M* 2fak_M* 2fny_M*
2gpl_M* 3d29_M* 3dy3_M* 3dy4_M* 3e47_M* 3gpj_M* 3gpt_M*
3gpw_M* 3hye_M* 3l5q_R 3mg0_M* 3mg4_M* ...
Length = 233
Score = 179 bits (457), Expect = 1e-57
Identities = 35/167 (20%), Positives = 59/167 (35%), Gaps = 13/167 (7%)
Query: 28 GTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFV 87
GT++I++++D GV+I AD+ S G+ + ++L V DN SG +D Q I +
Sbjct: 8 GTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLL 67
Query: 88 S-----YNLDLQRMELGEEPLVYSGAKLFQELVYSYRDS---LTAGIICAGWDRKKGGQV 139
D + E + ++Y R L II AG +
Sbjct: 68 KDLVTENAYDNPLADAEEALEPSYIFEYLATVMYQRRSKMNPLWNAIIVAGVQSNGDQFL 127
Query: 140 YCIPLGGMLMRQKMAMGGSGSTYLYGHMDNQFKE-----NMTKKEAM 181
+ L G+ G G+ + T + A
Sbjct: 128 RYVNLLGVTYSSPTLATGFGAHMANPLLRKVVDRESDIPKTTVQVAE 174
>1ryp_J 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_I*
1g65_I 1vsy_J 2f16_I* 2fak_I* 2fny_I* 2gpl_I* 3d29_I*
3dy3_I* 3dy4_I* 3e47_I* 3gpj_I* 3gpt_I* 3gpw_I* 3hye_I*
3l5q_N 3mg0_I* 3mg4_I* 3oeu_I* 3oev_I* ...
Length = 204
Score = 178 bits (453), Expect = 2e-57
Identities = 27/159 (16%), Positives = 65/159 (40%), Gaps = 4/159 (2%)
Query: 28 GTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFV 87
G ++A+ V I D R + + + +K+ +++ +G A D +++
Sbjct: 8 GGIVVAMTGKDCVAIACDLRLGSQSLGVSNKFEKIFHY-GHVFLGITGLATDVTTLNEMF 66
Query: 88 SYNLDLQRMELGEEPLVYSGAKLFQELVYSYRDS-LTAGIICAGWDRKKG-GQVYCI-PL 144
Y +L +++ + +L +Y R G + AG + K G + +
Sbjct: 67 RYKTNLYKLKEERAIEPETFTQLVSSSLYERRFGPYFVGPVVAGINSKSGKPFIAGFDLI 126
Query: 145 GGMLMRQKMAMGGSGSTYLYGHMDNQFKENMTKKEAMST 183
G + + + G+ S L+G ++ ++ N+ ++ T
Sbjct: 127 GCIDEAKDFIVSGTASDQLFGMCESLYEPNLEPEDLFET 165
>1q5q_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide,
inter-subunit contacts, RH erythropolis, hydrolase;
2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4
Length = 235
Score = 171 bits (434), Expect = 3e-54
Identities = 29/164 (17%), Positives = 61/164 (37%), Gaps = 11/164 (6%)
Query: 29 TTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVS 88
TTI+A+ + GGV++ D R++ G +A+R +K+ + +G+A + +
Sbjct: 1 TTIVALTYKGGVLLAGDRRATQGNLIASRDVEKVYVTDEYSAAGIAGTAGIAIELVRLFA 60
Query: 89 YNLDLQRMELGEEPLVYSGAKLFQELVYSYRDS---------LTAGIICAGWDRKKGGQV 139
L+ G A +V + L G D + G++
Sbjct: 61 VELEHYEKIEGVPLTFDGKANRLASMVRGNLGAAMQGLAVVPLLVGYDLDADDESRAGRI 120
Query: 140 YCIPLGGMLMRQK--MAMGGSGSTYLYGHMDNQFKENMTKKEAM 181
+ G ++ GSGS + + + + ++ A+
Sbjct: 121 VSYDVVGGRYEERAGYHAVGSGSLFAKSALKKIYSPDSDEETAL 164
>1g0u_M Proteasome component PRE4; ubiquitin, degradation, protease,
NTN-hydrolase; 2.40A {Saccharomyces cerevisiae} SCOP:
d.153.1.4 PDB: 2zcy_M* 3bdm_M* 3mg6_M* 3mg7_M* 3mg8_M*
3nzj_M* 3nzw_M* 3nzx_M*
Length = 266
Score = 171 bits (434), Expect = 9e-54
Identities = 38/189 (20%), Positives = 63/189 (33%), Gaps = 13/189 (6%)
Query: 6 YNVNAYHGGVEAPDWLTAKHSCGTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRV 65
YN + G GT++I++++D GV+I AD+ S G+ + ++L V
Sbjct: 19 YNTQIANAGASPMVNTQQPIVTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPV 78
Query: 66 TDNIYCCRSGSAADTQAISDFVS-----YNLDLQRMELGEEPLVYSGAKLFQELVYSYRD 120
DN SG +D Q I + D + E + ++Y R
Sbjct: 79 GDNTVVGISGDISDMQHIERLLKDLVTENAYDNPLADAEEALEPSYIFEYLATVMYQRRS 138
Query: 121 S---LTAGIICAGWDRKKGGQVYCIPLGGMLMRQKMAMGGSGSTYLYGHMDNQFK----- 172
L II AG + + L G+ G G+ +
Sbjct: 139 KMNPLWNAIIVAGVQSNGDQFLRYVNLLGVTYSSPTLATGFGAHMANPLLRKVVDRESDI 198
Query: 173 ENMTKKEAM 181
T + A
Sbjct: 199 PKTTVQVAE 207
>2jay_A Proteasome; hydrolase; 1.99A {Mycobacterium tuberculosis} PDB:
3mka_C 3mi0_C* 2fhg_H* 2fhh_H 3krd_C* 3mfe_G 3hfa_H*
3h6i_C 3h6f_C 3hf9_H 3mfe_H
Length = 291
Score = 170 bits (431), Expect = 5e-53
Identities = 37/183 (20%), Positives = 64/183 (34%), Gaps = 11/183 (6%)
Query: 10 AYHGGVEAPDWLTAKHSCGTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNI 69
A G A+ GTTI+A+++ GGVV+ D RS+ G ++ R K+ D
Sbjct: 39 ASISGGAPLAGGDAQLPHGTTIVALKYPGGVVMAGDRRSTQGNMISGRDVRKVYITDDYT 98
Query: 70 YCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQELVYS----YRDSLTAG 125
+G+AA + + L+ G +V L A
Sbjct: 99 ATGIAGTAAVAVEFARLYAVELEHYEKLEGVPLTFAGKINRLAIMVRGNLAAAMQGLLAL 158
Query: 126 IICAGWDR-----KKGGQVYCIPLGG--MLMRQKMAMGGSGSTYLYGHMDNQFKENMTKK 178
+ AG+D + G++ G + + GSGS + M + +
Sbjct: 159 PLLAGYDIHASDPQSAGRIVSFDAAGGWNIEEEGYQAVGSGSLFAKSSMKKLYSQVTDGD 218
Query: 179 EAM 181
+
Sbjct: 219 SGL 221
>1q5r_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide,
inter-subunit contacts, hydrolase; 3.10A {Rhodococcus
erythropolis} SCOP: d.153.1.4 PDB: 2h6j_H
Length = 294
Score = 169 bits (430), Expect = 5e-53
Identities = 33/192 (17%), Positives = 68/192 (35%), Gaps = 15/192 (7%)
Query: 1 MWNKDYNVNAYHGGVEAPDWLTAKHSCGTTIIAVEFDGGVVIGADSRSSTGAYVANRVAD 60
+ G+E+ D A H GTTI+A+ + GGV++ D R++ G +A+R +
Sbjct: 42 RIGHRSHSTRGGDGMESGD--LAPH--GTTIVALTYKGGVLLAGDRRATQGNLIASRDVE 97
Query: 61 KLTRVTDNIYCCRSGSAADTQAISDFVSYNLDLQRMELGEEPLVYSGAKLFQELVYSYRD 120
+ + +G+A + + L+ G A +V
Sbjct: 98 AVYVTDEYSAAGIAGTAGIAIELVRLFAVELEHYEKIEGVPLTFDGKANRLASMVRGNLG 157
Query: 121 SLT---------AGIICAGWDRKKGGQVYCIPLGGMLMRQK--MAMGGSGSTYLYGHMDN 169
+ G D + G++ + G ++ GSGS + +
Sbjct: 158 AAMQGLAVVPLLVGYDLDADDESRAGRIVSYDVVGGRYEERAGYHAVGSGSLFAKSALKK 217
Query: 170 QFKENMTKKEAM 181
+ + ++ A+
Sbjct: 218 IYSPDSDEETAL 229
>1q5q_A Proteasome alpha-type subunit 1; proteasome assembly, Pro-peptide,
inter-subunit contacts, RH erythropolis, hydrolase;
2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB:
2h6j_A 1q5r_A
Length = 259
Score = 92.4 bits (229), Expect = 2e-23
Identities = 22/165 (13%), Positives = 57/165 (34%), Gaps = 17/165 (10%)
Query: 28 GTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFV 87
G +++ + F GV+ A++ S+ K++ + D + G + + +
Sbjct: 27 GRSVVVLTFRDGVLFVAENPSTAL--------HKVSELYDRLGFAAVGKYNEFENLRRAG 78
Query: 88 SYNLDLQRMELGEEP-----LVYSGAKLFQELVYSYRDSLTAGIICA---GWDRKKGGQV 139
+ D++ L + A+ + I A K Q+
Sbjct: 79 IVHADMRGYSYDRRDVTGRSLANAYAQTLGTIFTEQPKPYEVEICVAEVGRVGSPKAPQL 138
Query: 140 YCIPLGGMLMRQKMAM-GGSGSTYLYGHMDNQFKENMTKKEAMST 183
Y I G ++ ++ + G + + M ++ ++ + A+
Sbjct: 139 YRITYDGSIVDEQHFVVMGGTTEPIATAMRESYRADLDLEAAVGI 183
>1g3k_A ATP-dependent protease HSLV; hydrolase; 1.90A {Haemophilus
influenzae} SCOP: d.153.1.4 PDB: 1g3i_G 1jjw_A 1kyi_G*
1ofh_G* 1ofi_G* 1e94_A* 1g4a_B* 1g4b_M 1hqy_A* 1ht1_C*
1ht2_A* 1ned_A
Length = 174
Score = 77.7 bits (191), Expect = 1e-18
Identities = 33/154 (21%), Positives = 61/154 (39%), Gaps = 11/154 (7%)
Query: 29 TTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDN-IYCCRSGSAADTQAISDFV 87
TTI++V +G VV+G D + S G V A K+ R+ + + +G AD + +
Sbjct: 1 TTIVSVRRNGQVVVGGDGQVSLGNTVMKGNARKVRRLYNGKVLAGFAGGTADAFTLFELF 60
Query: 88 SYNLDLQRMELGEEPLVYSGAKLFQELVYSYRDSLTAGIICAGWDRKKGGQVYCIPLGGM 147
L++ + L + + AK ++ L A +I A + I G
Sbjct: 61 ERKLEMHQGHLLKSAVEL--AKDWRT--DRALRKLEAMLIVADEK-----ESLIITGIGD 111
Query: 148 LMRQKM-AMGGSGSTYLYGHMDNQFKENMTKKEA 180
+++ + + GS Y + T+ A
Sbjct: 112 VVQPEEDQILAIGSGGNYALSAARALVENTELSA 145
>3mi0_A Proteasome subunit alpha; enzyme inhibitors, lactones, proteasome
endopeptidase comple mycobacterium tuberculosis,
hydrolase; HET: SA6; 2.20A {Mycobacterium tuberculosis}
PDB: 3h6f_A 3krd_A* 3h6i_A* 3mka_A 2fhh_A* 2fhg_A 3hfa_D
3hf9_A 3mfe_D
Length = 248
Score = 75.0 bits (184), Expect = 5e-17
Identities = 21/163 (12%), Positives = 52/163 (31%), Gaps = 17/163 (10%)
Query: 28 GTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFV 87
+++A+ + GGV+ A++ S + K++ + D + +G + +
Sbjct: 27 AKSVVALAYAGGVLFVAENPSRSL--------QKISELYDRVGFAAAGKFNEFDNLRRGG 78
Query: 88 SYNLDLQRMELGEEP-----LVYSGAKLFQELVYSYRDSLTAGIICAGWDR---KKGGQV 139
D + L A+ + + A K ++
Sbjct: 79 IQFADTRGYAYDRRDVTGRQLANVYAQTLGTIFTEQAKPYEVELCVAEVAHYGETKRPEL 138
Query: 140 YCI-PLGGMLMRQKMAMGGSGSTYLYGHMDNQFKENMTKKEAM 181
Y I G + + G + + + + EN + +A+
Sbjct: 139 YRITYDGSIADEPHFVVMGGTTEPIANALKESYAENASLTDAL 181
>1m4y_A ATP-dependent protease HSLV; N-terminal catalytic threonine
residue, hydrolase; 2.10A {Thermotoga maritima} SCOP:
d.153.1.4
Length = 171
Score = 58.1 bits (140), Expect = 3e-11
Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Query: 29 TTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDN-IYCCRSGSAADTQAISDFV 87
TTI+ V +G V+G D + + G+ V A K+ ++ + + +GS AD + D
Sbjct: 1 TTILVVRRNGQTVMGGDGQVTFGSTVLKGNARKVRKLGEGKVLAGFAGSVADAMTLFDRF 60
Query: 88 SYNLDLQRMELG 99
L L
Sbjct: 61 EAKLREWGGNLT 72
>2z3b_A ATP-dependent protease HSLV; N-terminal nucleophIle hydrolase;
2.50A {Bacillus subtilis} SCOP: d.153.1.4 PDB: 2z3a_A
1yyf_D* 3ty6_A
Length = 180
Score = 56.5 bits (136), Expect = 1e-10
Identities = 29/155 (18%), Positives = 47/155 (30%), Gaps = 9/155 (5%)
Query: 28 GTTIIAVEFDGGVVIGADSRSSTGAYVANR-VADKLTRVTDN-IYCCRSGSAADTQAISD 85
TTI AV+ G + D + + G V + A K+ ++ + + +GS AD + +
Sbjct: 5 ATTIFAVQHKGRSAMSGDGQVTFGQAVVMKHTARKVRKLFNGKVLAGFAGSVADAFTLFE 64
Query: 86 FVSYNLDLQRMELGEEPLVYSGAKLFQELVYSYRDSLTAGIICAGWDRKKGGQVYCIPLG 145
L+ L AK + L A +I D
Sbjct: 65 KFEAKLEEYNGNLKRA--AVELAK--EWRSDKVLRKLEAMLIVMNQDTLLLVSGTG---E 117
Query: 146 GMLMRQKMAMGGSGSTYLYGHMDNQFKENMTKKEA 180
+ + GSG Y K A
Sbjct: 118 VIEPDDGILAIGSGGNYALAAGRALKKHAGESMSA 152
>1ryp_C 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_B*
1g65_B 2f16_B* 2fak_B* 2fny_B* 2gpl_B* 3d29_B* 3dy3_B*
3dy4_B* 3e47_B* 3gpj_B* 3gpt_B* 3gpw_B* 3hye_B* 3mg0_B*
3mg4_B* 3okj_B* 3shj_B* 3tdd_B* 3nzj_B* ...
Length = 244
Score = 51.5 bits (124), Expect = 1e-08
Identities = 31/166 (18%), Positives = 65/166 (39%), Gaps = 19/166 (11%)
Query: 28 GTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAISDF- 86
T I + G+V+ A+ + ++ + +KL ++ D I +G AD + + +
Sbjct: 31 AGTAIGIMASDGIVLAAERKVTSTLLEQDTSTEKLYKLNDKIAVAVAGLTADAEILINTA 90
Query: 87 ----VSYNLDLQRMELGEEP----LVYSGAKLFQE--LVYSYRDSLTAGIICAGWDRKKG 136
+Y E+ LV + + Q R I AG+D + G
Sbjct: 91 RIHAQNY-----LKTYNEDIPVEILVRRLSDIKQGYTQHGGLR-PFGVSFIYAGYDDRYG 144
Query: 137 GQVYCIPLGGMLMRQK-MAMGGSGSTYLYGHMDNQFKENMTKKEAM 181
Q+Y G K +++ G+ ++ + +K++M +A+
Sbjct: 145 YQLYTSNPSGNYTGWKAISV-GANTSAAQTLLQMDYKDDMKVDDAI 189
>1iru_G 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_F* 3une_F 3unf_F* 3unh_F
Length = 254
Score = 50.0 bits (120), Expect = 6e-08
Identities = 27/160 (16%), Positives = 50/160 (31%), Gaps = 8/160 (5%)
Query: 28 GTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFV 87
+T I + GVV G + + Y +L V ++ +G AD ++++D
Sbjct: 33 SSTAIGIRCKDGVVFGVEKLVLSKLYEEGSN-KRLFNVDRHVGMAVAGLLADARSLADIA 91
Query: 88 SYNLDLQRMELGEEP----LVYSGAKLFQE--LVYSYRDSLTAGIICAGWDRKKGGQVYC 141
R G L A L + R + + G Q+Y
Sbjct: 92 REEASNFRSNFGYNIPLKHLADRVAMYVHAYTLYSAVR-PFGCSFMLGSYSVNDGAQLYM 150
Query: 142 IPLGGMLMRQKMAMGGSGSTYLYGHMDNQFKENMTKKEAM 181
I G+ G ++ + MT ++ +
Sbjct: 151 IDPSGVSYGYWGCAIGKARQAAKTEIEKLQMKEMTCRDIV 190
>1ryp_B 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_B
1g0u_A* 1jd2_A* 1g65_A 1z7q_B 2f16_A* 2fak_A* 2fny_A*
2gpl_A* 2zcy_A* 3bdm_A* 3d29_A* 3dy3_A* 3dy4_A* 3e47_A*
3gpj_A* 3gpt_A* 3gpw_A* 3hye_A* 3mg0_A* ...
Length = 250
Score = 49.2 bits (118), Expect = 1e-07
Identities = 39/167 (23%), Positives = 70/167 (41%), Gaps = 21/167 (12%)
Query: 28 GTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAISDF- 86
G T + ++ GVVI + +SS+ ++ + K++ +T +I SG D + + D
Sbjct: 31 GVTSLGIKATNGVVIATEKKSSSPLAMSETL-SKVSLLTPDIGAVYSGMGPDYRVLVDKS 89
Query: 87 -----VSYNLDLQRMELGEEP----LVYSGAKLFQE--LVYSYRDSLTAGIICAGWDRKK 135
SY + GE P LV AK+ QE R ++ AG D
Sbjct: 90 RKVAHTSY-----KRIYGEYPPTKLLVSEVAKIMQEATQSGGVR-PFGVSLLIAGHDEFN 143
Query: 136 GGQVYCIPLGGMLMRQK-MAMGGSGSTYLYGHMDNQFKENMTKKEAM 181
G +Y + G K A+ G GS ++ ++ + + ++A+
Sbjct: 144 GFSLYQVDPSGSYFPWKATAI-GKGSVAAKTFLEKRWNDELELEDAI 189
>1iru_C 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_B* 3une_B 3unf_B* 3unh_B
Length = 261
Score = 48.1 bits (115), Expect = 3e-07
Identities = 30/169 (17%), Positives = 63/169 (37%), Gaps = 24/169 (14%)
Query: 28 GTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAISDF- 86
T + + + GV++ A+ R+ ++K+ ++ +++ C +G +D +++
Sbjct: 31 AGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMACSVAGITSDANVLTNEL 90
Query: 87 ----VSYNLDLQRMELGE----EPLVYSGAKLFQE--LVYSYRDSLTAGIICAGWDRKKG 136
Y ++ E E LV + + Q R ++ GWD+ G
Sbjct: 91 RLIAQRY-----LLQYQEPIPCEQLVTALCDIKQAYTQFGGKR-PFGVSLLYIGWDKHYG 144
Query: 137 GQVYCIPLGGMLMRQK-MAMGG---SGSTYLYGHMDNQFKENMTKKEAM 181
Q+Y G K +G + + L + MT K A+
Sbjct: 145 FQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYK---EGEMTLKSAL 190
>1ryp_E 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_D*
1g65_D 2f16_D* 2fak_D* 2fny_D* 2gpl_D* 3d29_D* 3dy3_D*
3dy4_D* 3e47_D* 3gpj_D* 3gpt_D* 3gpw_D* 3hye_D* 3mg0_D*
3mg4_D* 3okj_D* 3shj_D* 3tdd_D* 2z5c_C ...
Length = 242
Score = 46.9 bits (112), Expect = 6e-07
Identities = 37/171 (21%), Positives = 69/171 (40%), Gaps = 24/171 (14%)
Query: 28 GTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAISDF- 86
G+T I + GVV+G + R+++ ++ + +K+ + +I C SG AD +++ +
Sbjct: 26 GSTAIGIATKEGVVLGVEKRATSPLLESDSI-EKIVEIDRHIGCAMSGLTADARSMIEHA 84
Query: 87 ----VSYNLDLQRMELGEEP----LVYSGAKLFQELVYSYRDSLTAG-------IICAGW 131
V++ + E+ L S L ++ AG
Sbjct: 85 RTAAVTH-----NLYYDEDINVESLTQSVCDLALRFGEGASGEERLMSRPFGVALLIAGH 139
Query: 132 DRKKGGQVYCIPLGGMLMRQK-MAMGGSGSTYLYGHMDNQFKENMTKKEAM 181
D G Q++ G R A+ GSGS + N++ ++T KEA
Sbjct: 140 DADDGYQLFHAEPSGTFYRYNAKAI-GSGSEGAQAELLNEWHSSLTLKEAE 189
>1iru_B 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_A* 3une_A 3unf_A* 3unh_A
Length = 233
Score = 46.4 bits (111), Expect = 9e-07
Identities = 29/166 (17%), Positives = 58/166 (34%), Gaps = 21/166 (12%)
Query: 28 GTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAISDF- 86
G + ++ GVV+ + + + Y V K+ +T +I SG D + +
Sbjct: 31 GAPSVGIKAANGVVLATEKKQKSILYDERSV-HKVEPITKHIGLVYSGMGPDYRVLVHRA 89
Query: 87 ----VSYNLDLQRMELGEEP----LVYSGAKLFQE--LVYSYRDSLTAGIICAGWDRKKG 136
Y + E LV A + QE R ++ GW+ +
Sbjct: 90 RKLAQQY-----YLVYQEPIPTAQLVQRVASVMQEYTQSGGVR-PFGVSLLICGWN-EGR 142
Query: 137 GQVYCIPLGGMLMRQK-MAMGGSGSTYLYGHMDNQFKENMTKKEAM 181
++ G K AM G ++ ++ E++ ++A+
Sbjct: 143 PYLFQSDPSGAYFAWKATAM-GKNYVNGKTFLEKRYNEDLELEDAI 187
>1ryp_G 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_F*
1g65_F 1vsy_G 2f16_F* 2fak_F* 2fny_F* 2gpl_F* 3d29_F*
3dy3_F* 3dy4_F* 3e47_F* 3gpj_F* 3gpt_F* 3gpw_F* 3hye_F*
3l5q_L 3mg0_F* 3mg4_F* 3okj_F* 3shj_F* ...
Length = 244
Score = 46.5 bits (111), Expect = 1e-06
Identities = 35/165 (21%), Positives = 57/165 (34%), Gaps = 16/165 (9%)
Query: 28 GTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFV 87
GTT I ++ + GVV + ++ V + K+ V +I C SG D + + +
Sbjct: 30 GTTSIGIKCNDGVVFAVEKLITSKLLVPQKN-VKIQVVDRHIGCVYSGLIPDGRHLVNRG 88
Query: 88 SYNLDLQRMELGEEP----LVYSGAKLFQE--LVYSYRDSLTAGIICAGWDRKKGGQVYC 141
+ + Q L S R I G D K G +Y
Sbjct: 89 REEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYNSVR-PFGVSTIFGGVD-KNGAHLYM 146
Query: 142 IPLGGMLMRQK-MAMGGSGS----TYLYGHMDNQFKENMTKKEAM 181
+ G K A G G L +D+ E ++ +EA+
Sbjct: 147 LEPSGSYWGYKGAAT-GKGRQSAKAELEKLVDH-HPEGLSAREAV 189
>1j2p_A Alpha-ring, proteasome alpha subunit; hydrolase; 2.60A
{Archaeoglobus fulgidus} SCOP: d.153.1.4 PDB: 1j2q_A*
Length = 246
Score = 46.5 bits (111), Expect = 1e-06
Identities = 29/160 (18%), Positives = 64/160 (40%), Gaps = 10/160 (6%)
Query: 28 GTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFV 87
G T I ++ GV++ AD R + + + +K+ ++ ++I SG AD + + D
Sbjct: 34 GATAIGIKCKEGVILIADKRVGSKLLEKDTI-EKIYKIDEHICAATSGLVADARVLIDRA 92
Query: 88 SYNLDLQRMELGEEP----LVYSGAKLFQE--LVYSYRDSLTAGIICAGWDRKKGGQVYC 141
+ R+ L Q+ R ++ AG + + ++Y
Sbjct: 93 RIEAQINRLTYDIPITVKELAKKICDFKQQYTQYGGVR-PFGVSLLIAGVN--EVPKLYE 149
Query: 142 IPLGGMLMRQKMAMGGSGSTYLYGHMDNQFKENMTKKEAM 181
G L+ K G G + + +++++++ +AM
Sbjct: 150 TDPSGALLEYKATAIGMGRMAVTEFFEKEYRDDLSFDDAM 189
>1ryp_D 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_C*
1g65_C 2f16_C* 2fak_C* 2fny_C* 2gpl_C* 3d29_C* 3dy3_C*
3dy4_C* 3e47_C* 3gpj_C* 3gpt_C* 3gpw_C* 3hye_C* 3mg0_C*
3mg4_C* 3oeu_C* 3oev_C* 3okj_C* 3shj_C* ...
Length = 241
Score = 45.4 bits (108), Expect = 2e-06
Identities = 31/171 (18%), Positives = 62/171 (36%), Gaps = 25/171 (14%)
Query: 28 GTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAISDF- 86
GT + V+ VV+G + RS+ K++++ ++ SG AD++ + +
Sbjct: 28 GTCAVGVKGKNCVVLGCERRSTLKLQDTRITPSKVSKIDSHVVLSFSGLNADSRILIEKA 87
Query: 87 ----VSYNLDLQRMELGEEP----LVYSGAKLFQE--LVYSYRDSLTAGIICAGWDRKKG 136
S+ R+ L + L A + Q R + AG+D +
Sbjct: 88 RVEAQSH-----RLTLEDPVTVEYLTRYVAGVQQRYTQSGGVR-PFGVSTLIAGFDPRDD 141
Query: 137 G-QVYCIPLGGMLMRQK-MAMGGSGS----TYLYGHMDNQFKENMTKKEAM 181
++Y G+ + G S +L + D + T +E +
Sbjct: 142 EPKLYQTEPSGIYSSWSAQTI-GRNSKTVREFLEKNYDRKEPP-ATVEECV 190
Score = 45.4 bits (108), Expect = 2e-06
Identities = 37/166 (22%), Positives = 69/166 (41%), Gaps = 21/166 (12%)
Query: 28 GTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAISDF- 86
GTT I + GVV+ D R ++ + +K+ ++ D++ SG AD + + D
Sbjct: 38 GTTAIGIACKDGVVLAVDRRITSKLVKIRSI-EKIFQIDDHVAAATSGLVADARVLIDRA 96
Query: 87 ----VSYNLDLQRMELGEEP----LVYSGAKLFQE--LVYSYRDSLTAGIICAGWDRKKG 136
Y R+ GEE L + Q R ++ AG D K
Sbjct: 97 RLEAQIY-----RLTYGEEISIEMLAKKICDIKQAYTQHGGVR-PFGVSLLIAGID-KNE 149
Query: 137 GQVYCIPLGGMLMRQK-MAMGGSGSTYLYGHMDNQFKENMTKKEAM 181
+++ G L+ K A+ GSG + ++ ++++++T E +
Sbjct: 150 ARLFETDPSGALIEYKATAI-GSGRPVVMELLEKEYRDDITLDEGL 194
>1ryp_A 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_G*
1g65_G 1vsy_A 2f16_G* 2fak_G* 2fny_G* 2gpl_G* 3d29_G*
3dy3_G* 3dy4_G* 3e47_G* 3gpj_G* 3gpt_G* 3gpw_G* 3hye_G*
3l5q_A 3mg0_G* 3mg4_G* 3oeu_G* 3oev_G* ...
Length = 243
Score = 44.9 bits (107), Expect = 3e-06
Identities = 24/173 (13%), Positives = 46/173 (26%), Gaps = 27/173 (15%)
Query: 28 GTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAISDF- 86
+AV V+ + + V + ++ I +G D + +
Sbjct: 30 NINSLAVRGKDCTVVISQKKVPDKLLDPTTV-SYIFCISRTIGMVVNGPIPDARNAALRA 88
Query: 87 ----VSYNLDLQRMELGEEP----LVYSGAKLFQE--LVYSYRDSLTAGIICAGWDRKKG 136
+ R + G + L A L Q R L + D + G
Sbjct: 89 KAEAAEF-----RYKYGYDMPCDVLAKRMANLSQIYTQRAYMR-PLGVILTFVSVDEELG 142
Query: 137 GQVYCIPLGGMLMRQK-MAMGGSGS----TYL---YGHMDNQFKENMTKKEAM 181
+Y G + K A G T L + + ++ +
Sbjct: 143 PSIYKTDPAGYYVGYKATAT-GPKQQEITTNLENHFKKSKIDHINEESWEKVV 194
>1iru_E 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_D* 3une_D 3unf_D* 3unh_D
Length = 241
Score = 44.5 bits (106), Expect = 4e-06
Identities = 31/170 (18%), Positives = 70/170 (41%), Gaps = 24/170 (14%)
Query: 28 GTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAISDF- 86
G+T I ++ GV + + R ++ + + +K+ + +I C SG AD + + D
Sbjct: 34 GSTAIGIQTSEGVCLAVEKRITSPLMEPSSI-EKIVEIDAHIGCAMSGLIADAKTLIDKA 92
Query: 87 ----VSYNLDLQRMELGEEP----LVYSGAKLFQE--LVYSYRDSLT----AGIICAGWD 132
++ E + + + L + + +++ ++ G D
Sbjct: 93 RVETQNH-----WFTYNETMTVESVTQAVSNLALQFGEEDADPGAMSRPFGVALLFGGVD 147
Query: 133 RKKGGQVYCIPLGGMLMRQK-MAMGGSGSTYLYGHMDNQFKENMTKKEAM 181
+KG Q++ + G ++ A+ GS S + + ++MT KEA+
Sbjct: 148 -EKGPQLFHMDPSGTFVQCDARAI-GSASEGAQSSLQELYHKSMTLKEAI 195
>3nzj_F Proteasome component C1; ubiquitin, protein degradation, N-terminal
nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO
MES; 2.40A {Saccharomyces cerevisiae} PDB: 1z7q_G*
3nzw_F* 3nzx_F* 3un4_F* 3un8_F* 3bdm_F* 1fnt_G* 2zcy_F*
Length = 288
Score = 43.9 bits (104), Expect = 7e-06
Identities = 35/164 (21%), Positives = 57/164 (34%), Gaps = 14/164 (8%)
Query: 28 GTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFV 87
GTT I ++ + GVV + ++ V + K+ V +I C SG D + + +
Sbjct: 34 GTTSIGIKCNDGVVFAVEKLITSKLLVPQKN-VKIQVVDRHIGCVYSGLIPDGRHLVNRG 92
Query: 88 SYNLDLQRMELGEEP----LVYSGAKLFQE--LVYSYRDSLTAGIICAGWDRKKGGQVYC 141
+ + Q L S R I G D K G +Y
Sbjct: 93 REEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYNSVR-PFGVSTIFGGVD-KNGAHLYM 150
Query: 142 IPLGGMLMRQKMAMGGSGS----TYLYGHMDNQFKENMTKKEAM 181
+ G K A G G L +D+ E ++ +EA+
Sbjct: 151 LEPSGSYWGYKGAATGKGRQSAKAELEKLVDH-HPEGLSAREAV 193
>1yar_A Proteasome alpha subunit; proteasome 20S, PA26 proteasome activator
11S, hydrolase-HYD activator complex; 1.90A
{Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_A
1pma_A 3c91_A 3c92_A 3ipm_A 2ku1_A 2ku2_A 1yau_A 3jrm_A
3jse_A 3jtl_A
Length = 233
Score = 43.8 bits (104), Expect = 7e-06
Identities = 38/166 (22%), Positives = 72/166 (43%), Gaps = 21/166 (12%)
Query: 28 GTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAISDF- 86
G+T + ++F GV++ +D + + N + +K+ + D + SG AD + + DF
Sbjct: 34 GSTALGMKFANGVLLISDKKVRSRLIEQNSI-EKIQLIDDYVAAVTSGLVADARVLVDFA 92
Query: 87 ----VSYNLDLQRMELGEEP----LVYSGAKLFQE--LVYSYRDSLTAGIICAGWDRKKG 136
++ G LV A Q+ R +I AG D + G
Sbjct: 93 RISAQQE-----KVTYGSLVNIENLVKRVADQMQQYTQYGGVR-PYGVSLIFAGID-QIG 145
Query: 137 GQVYCIPLGGMLMRQK-MAMGGSGSTYLYGHMDNQFKENMTKKEAM 181
+++ G + K A+ GSG + ++ ++KEN+ +KEA+
Sbjct: 146 PRLFDCDPAGTINEYKATAI-GSGKDAVVSFLEREYKENLPEKEAV 190
>1iru_D 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unf_C* 3une_C* 3unh_C 3unb_C*
Length = 248
Score = 43.8 bits (104), Expect = 9e-06
Identities = 28/166 (16%), Positives = 59/166 (35%), Gaps = 20/166 (12%)
Query: 28 GTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAISDF- 86
G+T + V VV+G + +S V K+ + DN+ +G AD + + +
Sbjct: 29 GSTAVGVRGRDIVVLGVEKKSVAKLQDERTV-RKICALDDNVCMAFAGLTADARIVINRA 87
Query: 87 ----VSYNLDLQRMELGEEP----LVYSGAKLFQE--LVYSYRDSLTAGIICAGWDRKKG 136
S+ R+ + + + A L Q R + G+D
Sbjct: 88 RVECQSH-----RLTVEDPVTVEYITRYIASLKQRYTQSNGRR-PFGISALIVGFDFDGT 141
Query: 137 GQVYCIPLGGMLMRQK-MAMGGSGSTYLYGHMDNQFKENMTKKEAM 181
++Y G K A+ G G+ + ++ + + + + +
Sbjct: 142 PRLYQTDPSGTYHAWKANAI-GRGAKSVREFLEKNYTDEAIETDDL 186
>1iru_A 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_G* 3une_G 3unf_G* 3unh_G
Length = 246
Score = 43.3 bits (103), Expect = 1e-05
Identities = 36/170 (21%), Positives = 62/170 (36%), Gaps = 26/170 (15%)
Query: 28 GTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAISDF- 86
G T +AV VI + ++ V L ++T+NI C +G AD+++
Sbjct: 36 GLTSVAVRGKDCAVIVTQKKVPDKLLDSSTV-THLFKITENIGCVMTGMTADSRSQVQRA 94
Query: 87 ----VSYNLDLQRMELGEEP----LVYSGAKLFQE--LVYSYRDSLTAGIICAGWDRKKG 136
++ + + G E L A + Q R L +I G D ++G
Sbjct: 95 RYEAANW-----KYKYGYEIPVDMLCKRIADISQVYTQNAEMR-PLGCCMILIGIDEEQG 148
Query: 137 GQVYCIPLGGMLMRQK-MAMGGSGS----TYLYGHMDNQFKENMTKKEAM 181
QVY G K A G ++L + K + T ++ +
Sbjct: 149 PQVYKCDPAGYYCGFKATAA-GVKQTESTSFLEKKVKK--KFDWTFEQTV 195
>1ryp_F 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_E*
1g65_E 2f16_E* 2fak_E* 2fny_E* 2gpl_E* 3d29_E* 3dy3_E*
3dy4_E* 3e47_E* 3gpj_E* 3gpt_E* 3gpw_E* 3hye_E* 3mg0_E*
3mg4_E* 3oeu_E* 3oev_E* 3okj_E* 3shj_E* ...
Length = 233
Score = 43.0 bits (102), Expect = 1e-05
Identities = 27/170 (15%), Positives = 59/170 (34%), Gaps = 27/170 (15%)
Query: 28 GTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAISDF- 86
G+ + + + V+ A R++ + K+ + +++ +G A D + +S++
Sbjct: 31 GSVTVGLRSNTHAVLVALKRNADELSSYQK---KIIKCDEHMGLSLAGLAPDARVLSNYL 87
Query: 87 ----VSYNLDLQRMELGEEP----LVYSGAKLFQE--LVYSYRDSLTAGIICAGWDRKKG 136
+ + + Q+ Y R G++ G+D K G
Sbjct: 88 RQQCNYS-----SLVFNRKLAVERAGHLLCDKAQKNTQSYGGR-PYGVGLLIIGYD-KSG 140
Query: 137 GQVYCIPLGGMLMRQK-MAMGGSGS----TYLYGHMDNQFKENMTKKEAM 181
+ G + A+ G+ S TYL +D K + E +
Sbjct: 141 AHLLEFQPSGNVTELYGTAI-GARSQGAKTYLERTLDTFIKIDGNPDELI 189
>1iru_F 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_E* 3une_E 3unf_E* 3unh_E
Length = 263
Score = 40.0 bits (94), Expect = 2e-04
Identities = 28/167 (16%), Positives = 56/167 (33%), Gaps = 25/167 (14%)
Query: 28 GTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAISDF- 86
G+ + ++ V+ A R+ + + K+ V ++I +G AD + + +F
Sbjct: 32 GSATVGLKSKTHAVLVALKRAQSELAAHQK---KILHVDNHIGISIAGLTADARLLCNFM 88
Query: 87 ----VSYNLDLQRMELGE----EPLVYSGAKLFQE--LVYSYRDSLTAGIICAGWDRKKG 136
+ R LV Q Y R G++ AG+D G
Sbjct: 89 RQECLDS-----RFVFDRPLPVSRLVSLIGSKTQIPTQRYGRR-PYGVGLLIAGYD-DMG 141
Query: 137 GQVYCIPLGGMLMRQK-MAMGGSGSTYLYGHMDNQFKENM--TKKEA 180
++ + M++ G+ S +++ E M E
Sbjct: 142 PHIFQTCPSANYFDCRAMSI-GARSQSARTYLERHMSEFMECNLNEL 187
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 27.7 bits (61), Expect = 2.9
Identities = 16/62 (25%), Positives = 22/62 (35%), Gaps = 10/62 (16%)
Query: 15 VEAP-DWLTAKHSCGTTIIAVEFDGGVVIG-----ADSRSSTGAYVANRVADKLTRVTDN 68
+ P W T T I+ +F G G ++ TG V VA L D+
Sbjct: 484 IRLPVKWETTTQFKATHIL--DFGPGGASGLGVLTHRNKDGTGVRVI--VAGTLDINPDD 539
Query: 69 IY 70
Y
Sbjct: 540 DY 541
>3lkd_A Type I restriction-modification system methyltransferase subunit;
Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics,
PSI-2; 2.25A {Streptococcus thermophilus}
Length = 542
Score = 26.5 bits (59), Expect = 6.3
Identities = 10/46 (21%), Positives = 18/46 (39%), Gaps = 2/46 (4%)
Query: 122 LTAGIICAGWDRKKGGQVY--CIPLGGMLMRQKMAMGGSGSTYLYG 165
L I G + K+G +Y + G +L+ K + +G
Sbjct: 208 LMTQIAFLGREDKQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFG 253
>3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP,
cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP;
2.00A {Saccharomyces cerevisiae}
Length = 447
Score = 26.2 bits (58), Expect = 8.1
Identities = 12/60 (20%), Positives = 19/60 (31%), Gaps = 6/60 (10%)
Query: 52 AYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVS--YNLDLQRMELGEEPLVYSGAK 109
+ L N Y G + ++ S YN +L+ E V +GA
Sbjct: 73 QFAIKEAQKALDIPMVNQYSPTRGRPSLINSLIKLYSPIYNTELKA----ENVTVTTGAN 128
>2w91_A Endo-beta-N-acetylglucosaminidase D; hydrolase, N-glycan, secreted,
oxazoline, NAG-thiazoline, substrate-participation;
1.40A {Streptococcus pneumoniae} PDB: 2w92_A*
Length = 653
Score = 26.0 bits (56), Expect = 8.9
Identities = 18/103 (17%), Positives = 29/103 (28%), Gaps = 14/103 (13%)
Query: 1 MWNKDYNVNAYHGGVEAPDWLTAKHSCGTTIIAVEFDGGVVIGADSRSSTGAYVAN---- 56
W ++ + G V PD + A H G + F AD A +
Sbjct: 87 YWQYLDSMVFWEGLVPTPDVIDAGHRNGVPVYGTLFFNWSNSIADQERFAEALKQDADGS 146
Query: 57 -RVADKLTRVTD---------NIYCCRSGSAADTQAISDFVSY 89
+A KL + N + + F+ Y
Sbjct: 147 FPIARKLVDMAKYYGYDGYFINQETTGDLVKPLGEKMRQFMLY 189
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.133 0.407
Gapped
Lambda K H
0.267 0.0790 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,867,039
Number of extensions: 163008
Number of successful extensions: 468
Number of sequences better than 10.0: 1
Number of HSP's gapped: 390
Number of HSP's successfully gapped: 59
Length of query: 184
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 96
Effective length of database: 4,244,745
Effective search space: 407495520
Effective search space used: 407495520
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (24.5 bits)