RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2074
(184 letters)
>d1iruh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 202
Score = 134 bits (339), Expect = 9e-41
Identities = 93/153 (60%), Positives = 126/153 (82%)
Query: 29 TTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVS 88
TTI+AV+FDGGVV+GADSR++TG+Y+ANRV DKLT + D I+CCRSGSAADTQA++D V+
Sbjct: 1 TTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVT 60
Query: 89 YNLDLQRMELGEEPLVYSGAKLFQELVYSYRDSLTAGIICAGWDRKKGGQVYCIPLGGML 148
Y L +EL E PLV++ A LF+E+ Y YR+ L AGII AGWD ++GGQVY +P+GGM+
Sbjct: 61 YQLGFHSIELNEPPLVHTAASLFKEMCYRYREDLMAGIIIAGWDPQEGGQVYSVPMGGMM 120
Query: 149 MRQKMAMGGSGSTYLYGHMDNQFKENMTKKEAM 181
+RQ A+GGSGS+Y+YG++D ++E MTK+E +
Sbjct: 121 VRQSFAIGGSGSSYIYGYVDATYREGMTKEECL 153
>d1ryph_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 205
Score = 122 bits (307), Expect = 5e-36
Identities = 87/154 (56%), Positives = 116/154 (75%), Gaps = 1/154 (0%)
Query: 28 GTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFV 87
G +I+AV F GV++GADSR++TGAY+ANRV DKLTRV D I+CCRSGSAADTQAI+D V
Sbjct: 9 GASIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHDKIWCCRSGSAADTQAIADIV 68
Query: 88 SYNLDLQRMELGEEPLVYSGAKLFQELVYSYRDSLTAGIICAGWDRKKGGQVYCIPLGGM 147
Y+L+L + G P + A +F+EL Y +D+LTAGII AG+D K G+VY IPLGG
Sbjct: 69 QYHLELYTSQYG-TPSTETAASVFKELCYENKDNLTAGIIVAGYDDKNKGEVYTIPLGGS 127
Query: 148 LMRQKMAMGGSGSTYLYGHMDNQFKENMTKKEAM 181
+ + A+ GSGST++YG+ D F+ENM+K+E +
Sbjct: 128 VHKLPYAIAGSGSTFIYGYCDKNFRENMSKEETV 161
>d1rypi_ d.153.1.4 (I:) Proteasome beta subunit (catalytic) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 222
Score = 121 bits (304), Expect = 2e-35
Identities = 51/153 (33%), Positives = 90/153 (58%), Gaps = 1/153 (0%)
Query: 29 TTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVS 88
TTI+ V+F+ GVVI AD+RS+ G VA++ KL R++ I+C +G+AADT+A++ +
Sbjct: 1 TTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIG 60
Query: 89 YNLDLQRMELGEEPLVYSGAKLFQELVYSYRDSLTAGIICAGWDRKKGGQVYCIPLGGML 148
N++L + EP V S ++ ++ ++ Y+ + A +I AG D G ++ I G
Sbjct: 61 SNIELHSLYTSREPRVVSALQMLKQHLFKYQGHIGAYLIVAGVD-PTGSHLFSIHAHGST 119
Query: 149 MRQKMAMGGSGSTYLYGHMDNQFKENMTKKEAM 181
GSGS +++ +K+++TK+EA+
Sbjct: 120 DVGYYLSLGSGSLAAMAVLESHWKQDLTKEEAI 152
>d1rypl_ d.153.1.4 (L:) Proteasome beta subunit (catalytic) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 212
Score = 117 bits (295), Expect = 4e-34
Identities = 42/154 (27%), Positives = 83/154 (53%), Gaps = 1/154 (0%)
Query: 29 TTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVS 88
TT +A F GG+++ DSR++ G +VA++ ++ + + +G AAD Q ++
Sbjct: 1 TTTLAFRFQGGIIVAVDSRATAGNWVASQTVKRVIEINPFLLGTMAGGAADCQFWETWLG 60
Query: 89 YNLDLQRMELGEEPLVYSGAKLFQELVYSYRDS-LTAGIICAGWDRKKGGQVYCIPLGGM 147
L + E V + +K+ LVY Y+ + L+ G + G+ RK+G +Y + G
Sbjct: 61 SQCRLHELREKERISVAAASKILSNLVYQYKGAGLSMGTMICGYTRKEGPTIYYVDSDGT 120
Query: 148 LMRQKMAMGGSGSTYLYGHMDNQFKENMTKKEAM 181
++ + GSG T+ YG +D+ +K +++ ++A+
Sbjct: 121 RLKGDIFCVGSGQTFAYGVLDSNYKWDLSVEDAL 154
>d1irui_ d.153.1.4 (I:) Proteasome beta subunit (catalytic) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 220
Score = 115 bits (289), Expect = 3e-33
Identities = 48/153 (31%), Positives = 85/153 (55%), Gaps = 1/153 (0%)
Query: 29 TTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVS 88
TTI V + G+V+GAD+R++ G VA++ K+ ++ NIYCC +G+AADT + +S
Sbjct: 1 TTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLIS 60
Query: 89 YNLDLQRMELGEEPLVYSGAKLFQELVYSYRDSLTAGIICAGWDRKKGGQVYCIPLGGML 148
NL+L + G P V + ++ +++++ YR + A ++ G D G +Y I G
Sbjct: 61 SNLELHSLSTGRLPRVVTANRMLKQMLFRYRGYIGAALVLGGVD-VTGPHLYSIYPHGST 119
Query: 149 MRQKMAMGGSGSTYLYGHMDNQFKENMTKKEAM 181
+ GSGS +++F+ +M ++EA
Sbjct: 120 DKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEAK 152
>d1j2qh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic)
{Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 202
Score = 110 bits (276), Expect = 2e-31
Identities = 38/154 (24%), Positives = 74/154 (48%), Gaps = 1/154 (0%)
Query: 29 TTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVS 88
TT + + GVV+ + R++ G ++A++ A K+ ++ D + +GS D Q ++ +
Sbjct: 1 TTTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTTAGSVGDAQFLARIIK 60
Query: 89 YNLDLQRMELGEEPLVYSGAKLFQELVYSYR-DSLTAGIICAGWDRKKGGQVYCIPLGGM 147
+L + +P V + A L L+ SYR ++ G D + P+GG
Sbjct: 61 IEANLYEIRRERKPTVRAIATLTSNLLNSYRYFPYLVQLLIGGIDSEGKSIYSIDPIGGA 120
Query: 148 LMRQKMAMGGSGSTYLYGHMDNQFKENMTKKEAM 181
+ + + GSGS YG ++++F + EA+
Sbjct: 121 IEEKDIVATGSGSLTAYGVLEDRFTPEIGVDEAV 154
>d1ryp1_ d.153.1.4 (1:) Proteasome beta subunit (catalytic) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 222
Score = 110 bits (275), Expect = 5e-31
Identities = 36/158 (22%), Positives = 64/158 (40%), Gaps = 2/158 (1%)
Query: 28 GTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFV 87
G TI+ + + V+ D+R+ T + +R K+ DNI +G AAD A+
Sbjct: 9 GGTILGIAGEDFAVLAGDTRNITDYSINSRYEPKVFDCGDNIVMSANGFAADGDALVKRF 68
Query: 88 SYNLDLQRMELG-EEPLVYSGAKLFQELVYSY-RDSLTAGIICAGWDRKKGGQVYCIPLG 145
++ + ++ + S A+ Q L+Y I AG D G VY
Sbjct: 69 KNSVKWYHFDHNDKKLSINSAARNIQHLLYGKRFFPYYVHTIIAGLDEDGKGAVYSFDPV 128
Query: 146 GMLMRQKMAMGGSGSTYLYGHMDNQFKENMTKKEAMST 183
G R++ GG+ ++ + +DNQ + +
Sbjct: 129 GSYEREQCRAGGAAASLIMPFLDNQVNFKNQYEPGTNG 166
>d1rypk_ d.153.1.4 (K:) Proteasome beta subunit (catalytic) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 198
Score = 107 bits (267), Expect = 4e-30
Identities = 27/159 (16%), Positives = 64/159 (40%), Gaps = 4/159 (2%)
Query: 29 TTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVS 88
I+ + V++ + + G V DK +++ + +G A DT ++++
Sbjct: 2 DIILGIRVQDSVILASSKAVTRGISVLKDSDDKTRQLSPHTLMSFAGEAGDTVQFAEYIQ 61
Query: 89 YNLDLQRMELGEEPLVYSGAKLFQELV---YSYRDSLTAGIICAGWDRKKGG-QVYCIPL 144
N+ L + E + + ++ + R ++ G+D+KK ++Y I
Sbjct: 62 ANIQLYSIREDYELSPQAVSSFVRQELAKSIRSRRPYQVNVLIGGYDKKKNKPELYQIDY 121
Query: 145 GGMLMRQKMAMGGSGSTYLYGHMDNQFKENMTKKEAMST 183
G + G Y + +D+ ++ +MT +E +
Sbjct: 122 LGTKVELPYGAHGYSGFYTFSLLDHHYRPDMTTEEGLDL 160
>d1ryp2_ d.153.1.4 (2:) Proteasome beta subunit (catalytic) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 233
Score = 107 bits (268), Expect = 7e-30
Identities = 33/167 (19%), Positives = 59/167 (35%), Gaps = 13/167 (7%)
Query: 28 GTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFV 87
GT++I++++D GV+I AD+ S G+ + ++L V DN SG +D Q I +
Sbjct: 8 GTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLL 67
Query: 88 SYNLDLQRME-----LGEEPLVYSGAKLFQELVYSYRDSLT---AGIICAGWDRKKGGQV 139
+ + E + ++Y R + II AG +
Sbjct: 68 KDLVTENAYDNPLADAEEALEPSYIFEYLATVMYQRRSKMNPLWNAIIVAGVQSNGDQFL 127
Query: 140 YCIPLGGMLMRQKMAMGGSGSTYLYGHMDNQFKE-----NMTKKEAM 181
+ L G+ G G+ + T + A
Sbjct: 128 RYVNLLGVTYSSPTLATGFGAHMANPLLRKVVDRESDIPKTTVQVAE 174
>d1irul_ d.153.1.4 (L:) Proteasome beta subunit (catalytic) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 201
Score = 105 bits (264), Expect = 1e-29
Identities = 44/156 (28%), Positives = 77/156 (49%), Gaps = 2/156 (1%)
Query: 29 TTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVS 88
TT +A +F GV++ ADSR++ GAY+A++ K+ + + +G AAD ++
Sbjct: 1 TTTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLA 60
Query: 89 YNLDLQRMELGEEPLVYSGAKLFQELVYSYRD-SLTAGIICAGWDRKKGGQVYCIPLGGM 147
+ + E V + +KL +VY Y+ L+ G + GWD++ G Y G
Sbjct: 61 RQCRIYELRNKERISVAAASKLLANMVYQYKGMGLSMGTMICGWDKRGPGLYYVDSEGNR 120
Query: 148 LMRQKMAMGGSGSTYLYGHMDNQFKENMTKKEAMST 183
+ ++ GSGS Y YG MD + ++ ++A
Sbjct: 121 ISGATFSV-GSGSVYAYGVMDRGYSYDLEVEQAYDL 155
>d1iruj_ d.153.1.4 (J:) Proteasome beta subunit (catalytic) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 204
Score = 102 bits (256), Expect = 2e-28
Identities = 31/157 (19%), Positives = 63/157 (40%), Gaps = 3/157 (1%)
Query: 28 GTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFV 87
G ++A++ V I AD R A + K+ + D +Y +G A D Q ++ +
Sbjct: 7 GGAVMAMKGKNCVAIAADRRFGIQAQLVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQRL 66
Query: 88 SYNLDLQRMELGEEPLVYSGAKLFQELVYSY-RDSLTAGIICAGWDRKKGGQ--VYCIPL 144
+ L+L ++ G + Y+ + L+Y + AG D K +
Sbjct: 67 KFRLNLYELKEGRQIKPYTLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPFICSLDLI 126
Query: 145 GGMLMRQKMAMGGSGSTYLYGHMDNQFKENMTKKEAM 181
G ++ + G+ + +YG ++ ++ NM
Sbjct: 127 GCPMVTDDFVVSGTCAEQMYGMCESLWEPNMDPDHLF 163
>d1yarh1 d.153.1.4 (H:1-203) Proteasome beta subunit (catalytic)
{Archaeon Thermoplasma acidophilum [TaxId: 2303]}
Length = 203
Score = 102 bits (255), Expect = 3e-28
Identities = 31/154 (20%), Positives = 66/154 (42%), Gaps = 3/154 (1%)
Query: 29 TTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVS 88
TT + + V++ + R + ++ ++ KL ++ +G D Q + ++
Sbjct: 1 TTTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQVLVRYMK 60
Query: 89 YNLDLQRMELGEEPLVYSGAKLFQELVYSYRDS-LTAGIICAGWDRKKGGQVYCIPLGGM 147
L+L R++ + + A L ++ + ++ G D V+ I G
Sbjct: 61 AELELYRLQRRVNMPIEAVATLLSNMLNQVKYMPYMVQLLVGGID--TAPHVFSIDAAGG 118
Query: 148 LMRQKMAMGGSGSTYLYGHMDNQFKENMTKKEAM 181
+ A GSGS ++YG +++Q+ E MT E +
Sbjct: 119 SVEDIYASTGSGSPFVYGVLESQYSEKMTVDEGV 152
>d1q5qa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic)
{Rhodococcus erythropolis [TaxId: 1833]}
Length = 227
Score = 100 bits (251), Expect = 2e-27
Identities = 23/163 (14%), Positives = 58/163 (35%), Gaps = 17/163 (10%)
Query: 28 GTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFV 87
G +++ + F GV+ A++ S+ K++ + D + G + + +
Sbjct: 19 GRSVVVLTFRDGVLFVAENPSTAL--------HKVSELYDRLGFAAVGKYNEFENLRRAG 70
Query: 88 SYNLDLQRMELGEEP-----LVYSGAKLFQELVYSYRDSLTAGIICAGWD---RKKGGQV 139
+ D++ L + A+ + I A K Q+
Sbjct: 71 IVHADMRGYSYDRRDVTGRSLANAYAQTLGTIFTEQPKPYEVEICVAEVGRVGSPKAPQL 130
Query: 140 YCIPLGGMLMRQKMAMGGSGSTY-LYGHMDNQFKENMTKKEAM 181
Y I G ++ ++ + G+T + M ++ ++ + A+
Sbjct: 131 YRITYDGSIVDEQHFVVMGGTTEPIATAMRESYRADLDLEAAV 173
>d1iruc_ d.153.1.4 (C:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 250
Score = 101 bits (252), Expect = 2e-27
Identities = 27/160 (16%), Positives = 62/160 (38%), Gaps = 6/160 (3%)
Query: 28 GTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFV 87
T + + + GV++ A+ R+ ++K+ ++ +++ C +G +D +++ +
Sbjct: 30 AGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMACSVAGITSDANVLTNEL 89
Query: 88 SYNLDLQRMELGEEPLVYSGAKLFQELVYSY-----RDSLTAGIICAGWDRKKGGQVYCI 142
++ E ++ +Y + ++ GWD+ G Q+Y
Sbjct: 90 RLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDKHYGFQLYQS 149
Query: 143 PLGGMLMRQKMAMGGSGSTYLYGHMDNQFKE-NMTKKEAM 181
G K G+ S + +KE MT K A+
Sbjct: 150 DPSGNYGGWKATCIGNNSAAAVSMLKQDYKEGEMTLKSAL 189
>d1q5qh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic)
{Rhodococcus erythropolis [TaxId: 1833]}
Length = 224
Score = 99 bits (248), Expect = 5e-27
Identities = 30/164 (18%), Positives = 60/164 (36%), Gaps = 11/164 (6%)
Query: 29 TTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVS 88
TTI+A+ + GGV++ D R++ G +A+R +K+ + +G+A + +
Sbjct: 1 TTIVALTYKGGVLLAGDRRATQGNLIASRDVEKVYVTDEYSAAGIAGTAGIAIELVRLFA 60
Query: 89 YNLDLQRMELGEEPLVYSGAKLFQELVYSYRDS---------LTAGIICAGWDRKKGGQV 139
L+ G A +V + L G D + G++
Sbjct: 61 VELEHYEKIEGVPLTFDGKANRLASMVRGNLGAAMQGLAVVPLLVGYDLDADDESRAGRI 120
Query: 140 YCIPLGGMLM--RQKMAMGGSGSTYLYGHMDNQFKENMTKKEAM 181
+ G R GSGS + + + + ++ A+
Sbjct: 121 VSYDVVGGRYEERAGYHAVGSGSLFAKSALKKIYSPDSDEETAL 164
>d1iru1_ d.153.1.4 (1:) Proteasome beta subunit (catalytic) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 213
Score = 99.2 bits (246), Expect = 8e-27
Identities = 37/164 (22%), Positives = 62/164 (37%), Gaps = 10/164 (6%)
Query: 28 GTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFV 87
G TI+A+ + ++ +D+R S G + R + K ++TD SG D ++ +
Sbjct: 9 GGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKII 68
Query: 88 SYNLDLQRMELGEEPLVYSGAKLFQELVYSY-RDSLTAGIICAGWDRKKGGQVYCIPLGG 146
L + + + + A + ++YS I G D + G VY G
Sbjct: 69 EARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEEGKGAVYSFDPVG 128
Query: 147 MLMRQKMAMGGSGSTYLYGHMDNQFK---------ENMTKKEAM 181
R GGS S L +DNQ ++ AM
Sbjct: 129 SYQRDSFKAGGSASAMLQPLLDNQVGFKNMQNVEHVPLSLDRAM 172
>d1irug_ d.153.1.4 (G:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 245
Score = 99.7 bits (248), Expect = 8e-27
Identities = 26/158 (16%), Positives = 50/158 (31%), Gaps = 6/158 (3%)
Query: 28 GTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFV 87
+T I + GVV G + + Y +L V ++ +G AD ++++D
Sbjct: 33 SSTAIGIRCKDGVVFGVEKLVLSKLYEEGSN-KRLFNVDRHVGMAVAGLLADARSLADIA 91
Query: 88 SYNLDLQRMELGEEPLVYSGAKLFQELVYSYR-----DSLTAGIICAGWDRKKGGQVYCI 142
R G + A V++Y + + G Q+Y I
Sbjct: 92 REEASNFRSNFGYNIPLKHLADRVAMYVHAYTLYSAVRPFGCSFMLGSYSVNDGAQLYMI 151
Query: 143 PLGGMLMRQKMAMGGSGSTYLYGHMDNQFKENMTKKEA 180
G+ G ++ + MT ++
Sbjct: 152 DPSGVSYGYWGCAIGKARQAAKTEIEKLQMKEMTCRDI 189
>d1irue_ d.153.1.4 (E:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 234
Score = 99.3 bits (247), Expect = 8e-27
Identities = 32/164 (19%), Positives = 62/164 (37%), Gaps = 12/164 (7%)
Query: 28 GTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFV 87
G+T I ++ GV + + R ++ + +K+ + +I C SG AD + + D
Sbjct: 27 GSTAIGIQTSEGVCLAVEKRITSP-LMEPSSIEKIVEIDAHIGCAMSGLIADAKTLIDKA 85
Query: 88 SYNLDLQRMELGEEPLVYSGAKLFQELVYSYRDS----------LTAGIICAGWDRKKGG 137
E V S + L + + ++ G D +KG
Sbjct: 86 RVETQNHWFTYNETMTVESVTQAVSNLALQFGEEDADPGAMSRPFGVALLFGGVD-EKGP 144
Query: 138 QVYCIPLGGMLMRQKMAMGGSGSTYLYGHMDNQFKENMTKKEAM 181
Q++ + G ++ GS S + + ++MT KEA+
Sbjct: 145 QLFHMDPSGTFVQCDARAIGSASEGAQSSLQELYHKSMTLKEAI 188
>d1iruk_ d.153.1.4 (K:) Proteasome beta subunit (catalytic) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 199
Score = 96.9 bits (240), Expect = 5e-26
Identities = 29/156 (18%), Positives = 67/156 (42%), Gaps = 3/156 (1%)
Query: 29 TTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVS 88
+I ++ V++ +D +++ DK+ ++++ I G A DT ++++
Sbjct: 2 EYLIGIQGPDYVLVASDRVAASNIVQMKDDHDKMFKMSEKILLLCVGEAGDTVQFAEYIQ 61
Query: 89 YNLDLQRMELGEEPLVYSGAKLFQELVYSYRDSLT---AGIICAGWDRKKGGQVYCIPLG 145
N+ L +M G E + A + + S T ++ AG+D +G +Y +
Sbjct: 62 KNVQLYKMRNGYELSPTAAANFTRRNLADCLRSRTPYHVNLLLAGYDEHEGPALYYMDYL 121
Query: 146 GMLMRQKMAMGGSGSTYLYGHMDNQFKENMTKKEAM 181
L + A G G+ +D + ++++ A+
Sbjct: 122 AALAKAPFAAHGYGAFLTLSILDRYYTPTISRERAV 157
>d1rypg_ d.153.1.4 (G:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 244
Score = 97.4 bits (242), Expect = 6e-26
Identities = 30/162 (18%), Positives = 57/162 (35%), Gaps = 10/162 (6%)
Query: 28 GTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFV 87
GTT I ++ + GVV + ++ V + K+ V +I C SG D + + +
Sbjct: 30 GTTSIGIKCNDGVVFAVEKLITSKLLVPQKN-VKIQVVDRHIGCVYSGLIPDGRHLVNRG 88
Query: 88 SYNLDLQRMELGEEPLVYSGAKLFQELVYSY-----RDSLTAGIICAGWDRKKGGQVYCI 142
+ + + A + V ++ I G K G +Y +
Sbjct: 89 REEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYNSVRPFGVSTIFGGV-DKNGAHLYML 147
Query: 143 PLGGMLMRQKMAMGGSGSTYLYGHMD---NQFKENMTKKEAM 181
G K A G G ++ + E ++ +EA+
Sbjct: 148 EPSGSYWGYKGAATGKGRQSAKAELEKLVDHHPEGLSAREAV 189
>d1rypj_ d.153.1.4 (J:) Proteasome beta subunit (catalytic) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 204
Score = 96.0 bits (238), Expect = 9e-26
Identities = 26/157 (16%), Positives = 63/157 (40%), Gaps = 4/157 (2%)
Query: 28 GTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFV 87
G ++A+ V I D R + + + +K+ +++ +G A D +++
Sbjct: 8 GGIVVAMTGKDCVAIACDLRLGSQSLGVSNKFEKIFHY-GHVFLGITGLATDVTTLNEMF 66
Query: 88 SYNLDLQRMELGEEPLVYSGAKLFQELVYSYR-DSLTAGIICAGWDRKKGG--QVYCIPL 144
Y +L +++ + +L +Y R G + AG + K G +
Sbjct: 67 RYKTNLYKLKEERAIEPETFTQLVSSSLYERRFGPYFVGPVVAGINSKSGKPFIAGFDLI 126
Query: 145 GGMLMRQKMAMGGSGSTYLYGHMDNQFKENMTKKEAM 181
G + + + G+ S L+G ++ ++ N+ ++
Sbjct: 127 GCIDEAKDFIVSGTASDQLFGMCESLYEPNLEPEDLF 163
>d1iru2_ d.153.1.4 (2:) Proteasome beta subunit (catalytic) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 217
Score = 96.0 bits (238), Expect = 1e-25
Identities = 30/161 (18%), Positives = 60/161 (37%), Gaps = 5/161 (3%)
Query: 26 SCGTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAISD 85
GT+++ V+F+GGVVI AD S G+ R ++ RV ++ SG AD Q +
Sbjct: 6 VTGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADFQYLKQ 65
Query: 86 FVSYNLDL-QRMELGEEPLVYSGAKLFQELVYSY--RDSLTAGIICAGWDRKKGGQVYCI 142
+ + + + G + +YS + + + G + +
Sbjct: 66 VLGQMVIDEELLGDGHSYSPRAIHSWLTRAMYSRRSKMNPLWNTMVIGGYADGESFLGYV 125
Query: 143 PLGGMLMRQKMAMGGSGSTYLYGHMDNQFK--ENMTKKEAM 181
+ G+ G G+ + + +++ EA
Sbjct: 126 DMLGVAYEAPSLATGYGAYLAQPLLREVLEKQPVLSQTEAR 166
>d1rypc_ d.153.1.4 (C:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 244
Score = 96.3 bits (239), Expect = 2e-25
Identities = 27/159 (16%), Positives = 60/159 (37%), Gaps = 5/159 (3%)
Query: 28 GTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFV 87
T I + G+V+ A+ + ++ + +KL ++ D I +G AD + + +
Sbjct: 31 AGTAIGIMASDGIVLAAERKVTSTLLEQDTSTEKLYKLNDKIAVAVAGLTADAEILINTA 90
Query: 88 SYNLDLQRMELGEEPLVYSGAKLFQELV-----YSYRDSLTAGIICAGWDRKKGGQVYCI 142
+ E+ V + ++ + I AG+D + G Q+Y
Sbjct: 91 RIHAQNYLKTYNEDIPVEILVRRLSDIKQGYTQHGGLRPFGVSFIYAGYDDRYGYQLYTS 150
Query: 143 PLGGMLMRQKMAMGGSGSTYLYGHMDNQFKENMTKKEAM 181
G K G+ ++ + +K++M +A+
Sbjct: 151 NPSGNYTGWKAISVGANTSAAQTLLQMDYKDDMKVDDAI 189
>d1irud_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 243
Score = 95.9 bits (238), Expect = 3e-25
Identities = 26/159 (16%), Positives = 55/159 (34%), Gaps = 6/159 (3%)
Query: 28 GTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFV 87
G+T + V VV+G + +S R K+ + DN+ +G AD + + +
Sbjct: 28 GSTAVGVRGRDIVVLGVEKKS-VAKLQDERTVRKICALDDNVCMAFAGLTADARIVINRA 86
Query: 88 SYNLDLQRMELGEEPLVYSGAKLFQELVYSY-----RDSLTAGIICAGWDRKKGGQVYCI 142
R+ + + V + L Y R + G+D ++Y
Sbjct: 87 RVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFDFDGTPRLYQT 146
Query: 143 PLGGMLMRQKMAMGGSGSTYLYGHMDNQFKENMTKKEAM 181
G K G G+ + ++ + + + + +
Sbjct: 147 DPSGTYHAWKANAIGRGAKSVREFLEKNYTDEAIETDDL 185
>d1rype_ d.153.1.4 (E:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 242
Score = 95.2 bits (236), Expect = 5e-25
Identities = 35/164 (21%), Positives = 67/164 (40%), Gaps = 12/164 (7%)
Query: 28 GTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFV 87
G+T I + GVV+G + R+++ + + +K+ + +I C SG AD +++ +
Sbjct: 26 GSTAIGIATKEGVVLGVEKRATSP-LLESDSIEKIVEIDRHIGCAMSGLTADARSMIEHA 84
Query: 88 SYNLDLQRMELGEEPLVYSGAKLFQELVYSYRDS-----------LTAGIICAGWDRKKG 136
+ E+ V S + +L + + ++ AG D G
Sbjct: 85 RTAAVTHNLYYDEDINVESLTQSVCDLALRFGEGASGEERLMSRPFGVALLIAGHDADDG 144
Query: 137 GQVYCIPLGGMLMRQKMAMGGSGSTYLYGHMDNQFKENMTKKEA 180
Q++ G R GSGS + N++ ++T KEA
Sbjct: 145 YQLFHAEPSGTFYRYNAKAIGSGSEGAQAELLNEWHSSLTLKEA 188
>d1rypd_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 241
Score = 93.6 bits (232), Expect = 2e-24
Identities = 28/163 (17%), Positives = 58/163 (35%), Gaps = 9/163 (5%)
Query: 28 GTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFV 87
GT + V+ VV+G + RS+ K++++ ++ SG AD++ + +
Sbjct: 28 GTCAVGVKGKNCVVLGCERRSTLKLQDTRITPSKVSKIDSHVVLSFSGLNADSRILIEKA 87
Query: 88 SYNLDLQRMELGEEPLVYSGAKLFQELVYSYRDS-----LTAGIICAGWD-RKKGGQVYC 141
R+ L + V + + Y S + AG+D R ++Y
Sbjct: 88 RVEAQSHRLTLEDPVTVEYLTRYVAGVQQRYTQSGGVRPFGVSTLIAGFDPRDDEPKLYQ 147
Query: 142 IPLGGMLMRQKMAMGGSGSTYLYGHMDNQFKEN---MTKKEAM 181
G+ G S + ++ + T +E +
Sbjct: 148 TEPSGIYSSWSAQTIGRNSKTVREFLEKNYDRKEPPATVEECV 190
>d1rypa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 243
Score = 93.6 bits (232), Expect = 2e-24
Identities = 20/166 (12%), Positives = 46/166 (27%), Gaps = 6/166 (3%)
Query: 23 AKHSCGTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQA 82
A + +AV V+ + + + + ++ I +G D +
Sbjct: 25 ATNQTNINSLAVRGKDCTVVISQKK-VPDKLLDPTTVSYIFCISRTIGMVVNGPIPDARN 83
Query: 83 ISDFVSYNLDLQRMELGEEP-----LVYSGAKLFQELVYSYRDSLTAGIICAGWDRKKGG 137
+ R + G + +Y L + D + G
Sbjct: 84 AALRAKAEAAEFRYKYGYDMPCDVLAKRMANLSQIYTQRAYMRPLGVILTFVSVDEELGP 143
Query: 138 QVYCIPLGGMLMRQKMAMGGSGSTYLYGHMDNQFKENMTKKEAMST 183
+Y G + K G + +++N FK++ +
Sbjct: 144 SIYKTDPAGYYVGYKATATGPKQQEITTNLENHFKKSKIDHINEES 189
>d1yara1 d.153.1.4 (A:13-233) Proteasome alpha subunit
(non-catalytic) {Archaeon Thermoplasma acidophilum
[TaxId: 2303]}
Length = 221
Score = 92.1 bits (228), Expect = 5e-24
Identities = 32/159 (20%), Positives = 68/159 (42%), Gaps = 7/159 (4%)
Query: 28 GTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFV 87
G+T + ++F GV++ +D + + +K+ + D + SG AD + + DF
Sbjct: 22 GSTALGMKFANGVLLISDKKV-RSRLIEQNSIEKIQLIDDYVAAVTSGLVADARVLVDFA 80
Query: 88 SYNLDLQRMELGEEP-----LVYSGAKLFQELVYSYRDSLTAGIICAGWDRKKGGQVYCI 142
+ +++ G + ++ Q Y +I AG + G +++
Sbjct: 81 RISAQQEKVTYGSLVNIENLVKRVADQMQQYTQYGGVRPYGVSLIFAGI-DQIGPRLFDC 139
Query: 143 PLGGMLMRQKMAMGGSGSTYLYGHMDNQFKENMTKKEAM 181
G + K GSG + ++ ++KEN+ +KEA+
Sbjct: 140 DPAGTINEYKATAIGSGKDAVVSFLEREYKENLPEKEAV 178
>d1j2pa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic)
{Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 243
Score = 92.0 bits (228), Expect = 8e-24
Identities = 29/159 (18%), Positives = 63/159 (39%), Gaps = 8/159 (5%)
Query: 28 GTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFV 87
G T I ++ GV++ AD R + + + +K+ ++ ++I SG AD + + D
Sbjct: 31 GATAIGIKCKEGVILIADKRVGSKLLEKDTI-EKIYKIDEHICAATSGLVADARVLIDRA 89
Query: 88 SYNLDLQRMELGEEPLVYS-----GAKLFQELVYSYRDSLTAGIICAGWDRKKGGQVYCI 142
+ R+ V Q Y ++ AG + + ++Y
Sbjct: 90 RIEAQINRLTYDIPITVKELAKKICDFKQQYTQYGGVRPFGVSLLIAGVN--EVPKLYET 147
Query: 143 PLGGMLMRQKMAMGGSGSTYLYGHMDNQFKENMTKKEAM 181
G L+ K G G + + +++++++ +AM
Sbjct: 148 DPSGALLEYKATAIGMGRMAVTEFFEKEYRDDLSFDDAM 186
>d1rypb_ d.153.1.4 (B:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 250
Score = 91.3 bits (226), Expect = 1e-23
Identities = 34/160 (21%), Positives = 64/160 (40%), Gaps = 7/160 (4%)
Query: 28 GTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFV 87
G T + ++ GVVI + +SS+ ++ + K++ +T +I SG D + + D
Sbjct: 31 GVTSLGIKATNGVVIATEKKSSSPLAMSETL-SKVSLLTPDIGAVYSGMGPDYRVLVDKS 89
Query: 88 SYNLDLQRMELGEEP-----LVYSGAKLFQELVYSYR-DSLTAGIICAGWDRKKGGQVYC 141
+ E LV AK+ QE S ++ AG D G +Y
Sbjct: 90 RKVAHTSYKRIYGEYPPTKLLVSEVAKIMQEATQSGGVRPFGVSLLIAGHDEFNGFSLYQ 149
Query: 142 IPLGGMLMRQKMAMGGSGSTYLYGHMDNQFKENMTKKEAM 181
+ G K G GS ++ ++ + + ++A+
Sbjct: 150 VDPSGSYFPWKATAIGKGSVAAKTFLEKRWNDELELEDAI 189
>d1iruf_ d.153.1.4 (F:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 238
Score = 88.2 bits (218), Expect = 2e-22
Identities = 24/154 (15%), Positives = 50/154 (32%), Gaps = 9/154 (5%)
Query: 28 GTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFV 87
G+ + ++ V+ A R+ + + K+ V ++I +G AD + + +F+
Sbjct: 29 GSATVGLKSKTHAVLVALKRAQSELAAHQK---KILHVDNHIGISIAGLTADARLLCNFM 85
Query: 88 SYNLDLQRMELGEEPLVYSGAKLFQELVYSY-----RDSLTAGIICAGWDRKKGGQVYCI 142
R V L R G++ AG+D G ++
Sbjct: 86 RQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYD-DMGPHIFQT 144
Query: 143 PLGGMLMRQKMAMGGSGSTYLYGHMDNQFKENMT 176
+ G+ S +++ E M
Sbjct: 145 CPSANYFDCRAMSIGARSQSARTYLERHMSEFME 178
>d2z3ba1 d.153.1.4 (A:1-180) HslV (ClpQ) protease {Bacillus subtilis
[TaxId: 1423]}
Length = 180
Score = 85.2 bits (210), Expect = 9e-22
Identities = 25/155 (16%), Positives = 43/155 (27%), Gaps = 9/155 (5%)
Query: 28 GTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTD--NIYCCRSGSAADTQAISD 85
TTI AV+ G + D + + G V + + R + +GS AD + +
Sbjct: 5 ATTIFAVQHKGRSAMSGDGQVTFGQAVVMKHTARKVRKLFNGKVLAGFAGSVADAFTLFE 64
Query: 86 FVSYNLDLQRMELGEEPLVYSGAKLFQELVYSYRDSLTAGIICAGWDRKKGGQVYCIPLG 145
L+ L + + +++ L G+V
Sbjct: 65 KFEAKLEEYNGNLKRAAVELAKEWRSDKVLRKLEAMLIVMNQDTLLLVSGTGEVIEPD-- 122
Query: 146 GMLMRQKMAMGGSGSTYLYGHMDNQFKENMTKKEA 180
+ GSG Y K A
Sbjct: 123 -----DGILAIGSGGNYALAAGRALKKHAGESMSA 152
>d1m4ya_ d.153.1.4 (A:) HslV (ClpQ) protease {Thermotoga maritima
[TaxId: 2336]}
Length = 171
Score = 84.0 bits (207), Expect = 2e-21
Identities = 22/152 (14%), Positives = 46/152 (30%), Gaps = 7/152 (4%)
Query: 29 TTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFVS 88
TTI+ V +G V+G D + + G+ V A K+ ++ + +
Sbjct: 1 TTILVVRRNGQTVMGGDGQVTFGSTVLKGNARKVRKLGEGKVLAGFAGSVADAMTLFDRF 60
Query: 89 YNLDLQRMELGEEPLVYSGAKLFQELVYSYRDSLTAGIICAGWDRKKGGQVYCIPLGGML 148
+ + V + V ++L K+ + +
Sbjct: 61 EAKLREWGGNLTKAAVELAKDWRTDRVLRRLEAL------LLVADKENIFIISGNGEVIQ 114
Query: 149 MRQKMAMGGSGSTYLYGHMDNQFKE-NMTKKE 179
A GSG Y + +++ +E
Sbjct: 115 PDDDAAAIGSGGPYALAAAKALLRNTDLSARE 146
>d1irua_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 244
Score = 85.4 bits (211), Expect = 3e-21
Identities = 35/161 (21%), Positives = 60/161 (37%), Gaps = 8/161 (4%)
Query: 28 GTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFV 87
G T +AV VI + ++ V L ++T+NI C +G AD+++
Sbjct: 35 GLTSVAVRGKDCAVIVTQKKVPDKLLDSSTV-THLFKITENIGCVMTGMTADSRSQVQRA 93
Query: 88 SYNLDLQRMELGEEPLVYSGAKLFQELVYSY-----RDSLTAGIICAGWDRKKGGQVYCI 142
Y + + G E V K ++ Y L +I G D ++G QVY
Sbjct: 94 RYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYKC 153
Query: 143 PLGGMLMRQKMAMGGSGSTYLYGHMDNQFKEN--MTKKEAM 181
G K G T ++ + K+ T ++ +
Sbjct: 154 DPAGYYCGFKATAAGVKQTESTSFLEKKVKKKFDWTFEQTV 194
>d1g3ka_ d.153.1.4 (A:) HslV (ClpQ) protease {Haemophilus influenzae
[TaxId: 727]}
Length = 173
Score = 82.9 bits (204), Expect = 4e-21
Identities = 31/153 (20%), Positives = 56/153 (36%), Gaps = 9/153 (5%)
Query: 29 TTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDN-IYCCRSGSAADTQAISDFV 87
TTI++V +G VV+G D + S G V A K+ R+ + + +G AD + +
Sbjct: 1 TTIVSVRRNGQVVVGGDGQVSLGNTVMKGNARKVRRLYNGKVLAGFAGGTADAFTLFELF 60
Query: 88 SYNLDLQRMELGEEPLVYSGAKLFQELVYSYRDSLTAGIICAGWDRKKGGQVYCIPLGGM 147
L++ + L + AK ++ + + D K+ + I
Sbjct: 61 ERKLEMHQGHLLKS--AVELAKDWRTDRALRKLEA----MLIVADEKESLIITGIGDVVQ 114
Query: 148 LMRQKMAMGGSGSTYLYGHMDNQFKENMTKKEA 180
++ GSG Y T+ A
Sbjct: 115 PEEDQILAIGSGGNYALSAAR--ALVENTELSA 145
>d1rypf_ d.153.1.4 (F:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 233
Score = 82.4 bits (203), Expect = 3e-20
Identities = 24/163 (14%), Positives = 56/163 (34%), Gaps = 13/163 (7%)
Query: 28 GTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFV 87
G+ + + + V+ A R++ + K+ + +++ +G A D + +S+++
Sbjct: 31 GSVTVGLRSNTHAVLVALKRNADELSSYQK---KIIKCDEHMGLSLAGLAPDARVLSNYL 87
Query: 88 SYNLDLQRMELGEEPLVYSGAKLFQELV-----YSYRDSLTAGIICAGWDRKKGGQVYCI 142
+ + + V L + G++ G+ K G +
Sbjct: 88 RQQCNYSSLVFNRKLAVERAGHLLCDKAQKNTQSYGGRPYGVGLLIIGY-DKSGAHLLEF 146
Query: 143 PLGGMLMRQKMAMGGSGS----TYLYGHMDNQFKENMTKKEAM 181
G + G+ S TYL +D K + E +
Sbjct: 147 QPSGNVTELYGTAIGARSQGAKTYLERTLDTFIKIDGNPDELI 189
>d1irub_ d.153.1.4 (B:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 233
Score = 81.3 bits (200), Expect = 7e-20
Identities = 21/160 (13%), Positives = 48/160 (30%), Gaps = 5/160 (3%)
Query: 28 GTTIIAVEFDGGVVIGADSRSSTGAYVANRVADKLTRVTDNIYCCRSGSAADTQAISDFV 87
G + ++ GVV+ + + + R K+ +T +I SG D + +
Sbjct: 31 GAPSVGIKAANGVVLATEKKQKSI-LYDERSVHKVEPITKHIGLVYSGMGPDYRVLVHRA 89
Query: 88 SYNLDLQRMELGEEPLVYSGAKLF----QELVYSYRDSLTAGIICAGWDRKKGGQVYCIP 143
+ E + QE S + + ++
Sbjct: 90 RKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLICGWNEGRPYLFQSD 149
Query: 144 LGGMLMRQKMAMGGSGSTYLYGHMDNQFKENMTKKEAMST 183
G K G ++ ++ E++ ++A+ T
Sbjct: 150 PSGAYFAWKATAMGKNYVNGKTFLEKRYNEDLELEDAIHT 189
>d2nysa1 b.136.1.2 (A:3-119) Uncharacterized protein AGR_C_3712p
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 117
Score = 25.7 bits (57), Expect = 2.2
Identities = 6/21 (28%), Positives = 10/21 (47%)
Query: 12 HGGVEAPDWLTAKHSCGTTII 32
GV L +K++ TI+
Sbjct: 45 APGVRISQHLKSKYAEQMTIV 65
>d1fiua_ c.52.1.10 (A:) Restriction endonuclease NgoIV {Neisseria
gonorrhoeae [TaxId: 485]}
Length = 286
Score = 25.7 bits (56), Expect = 3.9
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 37 DGGVVIGADSRSSTGAYVANRVADKL 62
+ GVV AD ++ +A +AD L
Sbjct: 26 NRGVVSNADGSNTRSFNIAKGIADLL 51
>d2bhga1 b.47.1.4 (A:7-205) 3C cysteine protease (picornain 3C)
{Foot-and-mouth disease virus FMDV [TaxId: 12110]}
Length = 199
Score = 24.3 bits (52), Expect = 8.7
Identities = 7/41 (17%), Positives = 14/41 (34%)
Query: 19 DWLTAKHSCGTTIIAVEFDGGVVIGADSRSSTGAYVANRVA 59
T G ++A + ++G S G + V+
Sbjct: 149 KAATRAGYAGGAVLAKDGADTFIVGTHSAGGNGVGYCSCVS 189
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.133 0.407
Gapped
Lambda K H
0.267 0.0432 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 689,139
Number of extensions: 28926
Number of successful extensions: 136
Number of sequences better than 10.0: 1
Number of HSP's gapped: 96
Number of HSP's successfully gapped: 44
Length of query: 184
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 104
Effective length of database: 1,309,196
Effective search space: 136156384
Effective search space used: 136156384
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.8 bits)