BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy208
(443 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 85.9 bits (211), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 67/271 (24%), Positives = 107/271 (39%), Gaps = 85/271 (31%)
Query: 123 LAGLGFTPEMQKRATKHFSGGWR-KMA-------------------------IIWLENYL 156
L GFT EM SGGW+ K+A + WL NYL
Sbjct: 532 LIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYL 591
Query: 157 QNWPTTLLVVSHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAFDKIKTEKLKNQQREIEAQ 216
T + +SHD FLD+V I + ++ Y+GN+ F
Sbjct: 592 NTCGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEF------------------ 633
Query: 217 RMHREHVQKFIDTFRYNANRASSVQSKIKQLERLPELKPIEK--EVEVVLKFPDTELLS- 273
+++ P K E+ ++ KFP+ L
Sbjct: 634 ------------------------------VKKCPAAKAYEELSNTDLEFKFPEPGYLEG 663
Query: 274 -----PPILQLSEVNFEYVPG--KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGI 326
I++++ + F+Y PG KP +T++ +L SRI ++G NGAGK+TL+ ++ G
Sbjct: 664 VKTKQKAIVKVTNMEFQY-PGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGE 722
Query: 327 ISPTAGTRTVHRNLKFGYFSQHHVDQLDMNL 357
+ PT+G H N + Y QH ++ +L
Sbjct: 723 LLPTSGEVYTHENCRIAYIKQHAFAHIESHL 753
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 73/162 (45%), Gaps = 6/162 (3%)
Query: 279 LSEVNFEYVPGKPILTNVC-LGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVH 337
L F G IL N L R I G NG GK+TL++ I T+
Sbjct: 436 LCNCEFSLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVDGFPTQEEC 495
Query: 338 RNLKFGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLS 397
R + + +H +D + + + + G +E + +L FG + ++ + +LS
Sbjct: 496 RTV----YVEHDIDGTHSDTSVLDFVFESGVGT-KEAIKDKLIEFGFTDEMIAMPISALS 550
Query: 398 GGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAIN 439
GG K ++A AR + + L+LDEPTNHLD + L +N
Sbjct: 551 GGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLN 592
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 33/49 (67%)
Query: 393 VGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441
+ LSGGQK ++ A P+ +VLDEPTN+LD +++ AL KA+ ++
Sbjct: 899 IRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF 947
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 82.8 bits (203), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 66/271 (24%), Positives = 105/271 (38%), Gaps = 85/271 (31%)
Query: 123 LAGLGFTPEMQKRATKHFSGGWR-KMA-------------------------IIWLENYL 156
L GFT E SGGW+ K+A + WL NYL
Sbjct: 526 LIEFGFTDEXIAXPISALSGGWKXKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYL 585
Query: 157 QNWPTTLLVVSHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAFDKIKTEKLKNQQREIEAQ 216
T + +SHD FLD+V I + ++ Y+GN+ F
Sbjct: 586 NTCGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEF------------------ 627
Query: 217 RMHREHVQKFIDTFRYNANRASSVQSKIKQLERLPELKPIEK--EVEVVLKFPDTELLS- 273
+++ P K E+ ++ KFP+ L
Sbjct: 628 ------------------------------VKKCPAAKAYEELSNTDLEFKFPEPGYLEG 657
Query: 274 -----PPILQLSEVNFEYVPG--KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGI 326
I++++ F+Y PG KP +T++ +L SRI ++G NGAGK+TL+ ++ G
Sbjct: 658 VKTKQKAIVKVTNXEFQY-PGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGE 716
Query: 327 ISPTAGTRTVHRNLKFGYFSQHHVDQLDMNL 357
+ PT+G H N + Y QH ++ +L
Sbjct: 717 LLPTSGEVYTHENCRIAYIKQHAFAHIESHL 747
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 71/162 (43%), Gaps = 6/162 (3%)
Query: 279 LSEVNFEYVPGKPILTNVC-LGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVH 337
L F G IL N L R I G NG GK+TL + I T+
Sbjct: 430 LCNCEFSLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLXRAIANGQVDGFPTQEEC 489
Query: 338 RNLKFGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLS 397
R + + +H +D + + + + G +E + +L FG + + + +LS
Sbjct: 490 RTV----YVEHDIDGTHSDTSVLDFVFESGVGT-KEAIKDKLIEFGFTDEXIAXPISALS 544
Query: 398 GGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAIN 439
GG K ++A AR + + L+LDEPTNHLD + L +N
Sbjct: 545 GGWKXKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLN 586
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 33/49 (67%)
Query: 393 VGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441
+ LSGGQK ++ A P+ +VLDEPTN+LD +++ AL KA+ ++
Sbjct: 893 IRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF 941
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 82.8 bits (203), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 66/271 (24%), Positives = 105/271 (38%), Gaps = 85/271 (31%)
Query: 123 LAGLGFTPEMQKRATKHFSGGWR-KMA-------------------------IIWLENYL 156
L GFT E SGGW+ K+A + WL NYL
Sbjct: 532 LIEFGFTDEXIAXPISALSGGWKXKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYL 591
Query: 157 QNWPTTLLVVSHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAFDKIKTEKLKNQQREIEAQ 216
T + +SHD FLD+V I + ++ Y+GN+ F
Sbjct: 592 NTCGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEF------------------ 633
Query: 217 RMHREHVQKFIDTFRYNANRASSVQSKIKQLERLPELKPIEK--EVEVVLKFPDTELLS- 273
+++ P K E+ ++ KFP+ L
Sbjct: 634 ------------------------------VKKCPAAKAYEELSNTDLEFKFPEPGYLEG 663
Query: 274 -----PPILQLSEVNFEYVPG--KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGI 326
I++++ F+Y PG KP +T++ +L SRI ++G NGAGK+TL+ ++ G
Sbjct: 664 VKTKQKAIVKVTNXEFQY-PGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGE 722
Query: 327 ISPTAGTRTVHRNLKFGYFSQHHVDQLDMNL 357
+ PT+G H N + Y QH ++ +L
Sbjct: 723 LLPTSGEVYTHENCRIAYIKQHAFAHIESHL 753
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 71/162 (43%), Gaps = 6/162 (3%)
Query: 279 LSEVNFEYVPGKPILTNVC-LGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVH 337
L F G IL N L R I G NG GK+TL + I T+
Sbjct: 436 LCNCEFSLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLXRAIANGQVDGFPTQEEC 495
Query: 338 RNLKFGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLS 397
R + + +H +D + + + + G +E + +L FG + + + +LS
Sbjct: 496 RTV----YVEHDIDGTHSDTSVLDFVFESGVGT-KEAIKDKLIEFGFTDEXIAXPISALS 550
Query: 398 GGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAIN 439
GG K ++A AR + + L+LDEPTNHLD + L +N
Sbjct: 551 GGWKXKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLN 592
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 33/49 (67%)
Query: 393 VGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441
+ LSGGQK ++ A P+ +VLDEPTN+LD +++ AL KA+ ++
Sbjct: 899 IRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF 947
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 86/197 (43%), Gaps = 48/197 (24%)
Query: 277 LQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAG---- 332
++ V+F Y G+ L +V + +VG +GAGK+T+L+++ ++G
Sbjct: 54 IEFENVHFSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRI 113
Query: 333 ---------------------------TRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEA 365
T+ N+++G + + D+++ + + +A
Sbjct: 114 DGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGN-DEVEAAAQAAGIHDA 172
Query: 366 --AFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPT 423
AFP E YR Q+G G+ LSGG+K RVA AR + AP ++LDE T
Sbjct: 173 IMAFP----EGYRTQVGERGLK----------LSGGEKQRVAIARTILKAPGIILLDEAT 218
Query: 424 NHLDIETIEALGKAINK 440
+ LD A+ ++ K
Sbjct: 219 SALDTSNERAIQASLAK 235
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 70/156 (44%), Gaps = 30/156 (19%)
Query: 293 LTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQ 352
L N+ L + ++G +G+GK+TLL I GI PT+G YF + V +
Sbjct: 19 LNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKI---------YFDEKDVTE 69
Query: 353 LDMNLRCVQLL--------------EAAFP----GKPQEEYR---RQLGGFGVSGDLALQ 391
L R V L+ AFP P+EE R++ L +
Sbjct: 70 LPPKDRNVGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNR 129
Query: 392 FVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD 427
+ LSGGQ+ RVA AR + P L+LDEP ++LD
Sbjct: 130 YPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLD 165
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of
The Abc Transporter Complex Cbionq
Length = 275
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 81/178 (45%), Gaps = 35/178 (19%)
Query: 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRT 335
IL++ E+N+ Y G L + + I+G NG GK+TL + GI+ P++G R
Sbjct: 7 ILKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSG-RI 65
Query: 336 VHRNLKFGYFSQHHVDQLDMNLRCV------QLLEAAFPGK----------PQEEYRRQL 379
+ N Y S+ + +L ++ V QL A+ P++E R+++
Sbjct: 66 LFDNKPIDY-SRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRV 124
Query: 380 GGFGVSGDLALQFVG----------SLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD 427
D AL+ G LS GQK RVA A + + P L+LDEPT LD
Sbjct: 125 -------DNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLD 175
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 66/135 (48%), Gaps = 7/135 (5%)
Query: 306 ICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEA 365
I IVG NG GKTT +K + G+ PT G + +L Y Q+ + D +LL
Sbjct: 315 IGIVGPNGIGKTTFVKXLAGVEEPTEGK--IEWDLTVAYKPQYI--KADYEGTVYELLSK 370
Query: 366 AFPGKPQEEYRRQ--LGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPT 423
K + + L G+ DL + V LSGG+ RVA A + + +LDEP+
Sbjct: 371 IDASKLNSNFYKTELLKPLGII-DLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPS 429
Query: 424 NHLDIETIEALGKAI 438
+LD+E A+ +AI
Sbjct: 430 AYLDVEQRLAVSRAI 444
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 66/158 (41%), Gaps = 27/158 (17%)
Query: 306 ICIVGDNGAGKTTLLKIIMGIISPT---------AGTRTVHRNLKFGYFSQHHVDQLD-- 354
+ IVG NG GK+T +KI+ G + P R N YF + ++
Sbjct: 50 VGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPV 109
Query: 355 MNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDL-----ALQF-------VGSLSGGQKS 402
+ + V L+ A GK E ++ +G L AL+ + LSGG+
Sbjct: 110 VKPQYVDLIPKAVKGKVIELLKKA----DETGKLEEVVKALELENVLEREIQHLSGGELQ 165
Query: 403 RVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINK 440
RVA A + F DEP+++LDI +AI +
Sbjct: 166 RVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRR 203
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex
With Tnp-Adp
Length = 243
Score = 58.5 bits (140), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 80/182 (43%), Gaps = 27/182 (14%)
Query: 282 VNFEYVPGKP-ILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN- 339
+ F Y P P IL N+ L I IVG +G+GK+TL K+I P G + +
Sbjct: 9 IRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHD 68
Query: 340 ----------LKFGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEE--YRRQLGGF----- 382
+ G Q D + +N + + A PG E+ Y +L G
Sbjct: 69 LALADPNWLRRQVGVVLQ---DNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFIS 125
Query: 383 ----GVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAI 438
G + + Q G LSGGQ+ R+A AR + P L+ DE T+ LD E+ + + +
Sbjct: 126 ELREGYNTIVGEQGAG-LSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNM 184
Query: 439 NK 440
+K
Sbjct: 185 HK 186
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 58.2 bits (139), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 54/168 (32%), Positives = 81/168 (48%), Gaps = 24/168 (14%)
Query: 277 LQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPT------ 330
++L+ V+F Y G +L +V +VG NG+GKTTLLKI+ G+++
Sbjct: 12 IELNSVSFRY-NGDYVLKDVNAEFETGKIYVVVGKNGSGKTTLLKILAGLLAAAGEIFLD 70
Query: 331 ---AGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEAAFP----GKPQEEYRRQLGGF- 382
A + +N+ GY Q+ Q+ + + AF G + E R+++
Sbjct: 71 GSPADPFLLRKNV--GYVFQNPSSQI---IGATVEEDVAFSLEIMGLDESEMRKRIKKVL 125
Query: 383 ---GVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD 427
G+SG LA +LSGGQK R+A A M FL LDEP + LD
Sbjct: 126 ELVGLSG-LAAADPLNLSGGQKQRLAIASMLARDTRFLALDEPVSMLD 172
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 75/172 (43%), Gaps = 27/172 (15%)
Query: 282 VNFEYVPGKP-ILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN- 339
+ F Y P P IL N+ L I IVG +G+GK+TL K+I P G + +
Sbjct: 7 IRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHD 66
Query: 340 ----------LKFGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEE--YRRQLGGF----- 382
+ G Q D + +N + + A PG E+ Y +L G
Sbjct: 67 LALADPNWLRRQVGVVLQ---DNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFIS 123
Query: 383 ----GVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIET 430
G + + Q G LSGGQ+ R+A AR + P L+ DE T+ LD E+
Sbjct: 124 ELREGYNTIVGEQGAG-LSGGQRQRIAIARALVNNPKILIFDEATSALDYES 174
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp
Bound State
Length = 247
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 75/172 (43%), Gaps = 27/172 (15%)
Query: 282 VNFEYVPGKP-ILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN- 339
+ F Y P P IL N+ L I IVG +G+GK+TL K+I P G + +
Sbjct: 13 IRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHD 72
Query: 340 ----------LKFGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEE--YRRQLGGF----- 382
+ G Q D + +N + + A PG E+ Y +L G
Sbjct: 73 LALADPNWLRRQVGVVLQ---DNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFIS 129
Query: 383 ----GVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIET 430
G + + Q G LSGGQ+ R+A AR + P L+ DE T+ LD E+
Sbjct: 130 ELREGYNTIVGEQGAG-LSGGQRQRIAIARALVNNPKILIFDEATSALDYES 180
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 75/172 (43%), Gaps = 27/172 (15%)
Query: 282 VNFEYVPGKP-ILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN- 339
+ F Y P P IL N+ L I IVG +G+GK+TL K+I P G + +
Sbjct: 7 IRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHD 66
Query: 340 ----------LKFGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEE--YRRQLGGF----- 382
+ G Q D + +N + + A PG E+ Y +L G
Sbjct: 67 LALADPNWLRRQVGVVLQ---DNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFIS 123
Query: 383 ----GVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIET 430
G + + Q G LSGGQ+ R+A AR + P L+ DE T+ LD E+
Sbjct: 124 ELREGYNTIVGEQGAG-LSGGQRQRIAIARALVNNPKILIFDEATSALDYES 174
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The
Abc-Transporter Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 75/172 (43%), Gaps = 27/172 (15%)
Query: 282 VNFEYVPGKP-ILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN- 339
+ F Y P P IL N+ L I IVG +G+GK+TL K+I P G + +
Sbjct: 13 IRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHD 72
Query: 340 ----------LKFGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEE--YRRQLGGF----- 382
+ G Q D + +N + + A PG E+ Y +L G
Sbjct: 73 LALADPNWLRRQVGVVLQ---DNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFIS 129
Query: 383 ----GVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIET 430
G + + Q G LSGGQ+ R+A AR + P L+ DE T+ LD E+
Sbjct: 130 ELREGYNTIVGEQGAG-LSGGQRQRIAIARALVNNPKILIFDEATSALDYES 180
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 68/135 (50%), Gaps = 7/135 (5%)
Query: 306 ICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEA 365
I IVG NG GKTT +K++ G+ PT G V +L Y Q+ + + + +LL
Sbjct: 371 IGIVGPNGIGKTTFVKMLAGVEEPTEGK--VEWDLTVAYKPQYIKAEYEGTV--YELLSK 426
Query: 366 AFPGKPQEEYRRQ--LGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPT 423
K + + L G+ DL + V LSGG+ RVA A + + +LDEP+
Sbjct: 427 IDSSKLNSNFYKTELLKPLGII-DLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPS 485
Query: 424 NHLDIETIEALGKAI 438
+LD+E A+ +AI
Sbjct: 486 AYLDVEQRLAVSRAI 500
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 69/154 (44%), Gaps = 19/154 (12%)
Query: 306 ICIVGDNGAGKTTLLKIIMGIISPTAG---------TRTVHRNLKFGYFSQHHVDQLD-- 354
+ IVG NG GKTT +KI+ G + P R N YF + ++
Sbjct: 106 VGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPV 165
Query: 355 MNLRCVQLLEAAFPGKPQEEYRR--QLGGFGVSG------DLALQFVGSLSGGQKSRVAF 406
+ + V LL A GK +E ++ ++G F ++ + + LSGG+ RVA
Sbjct: 166 VKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDRELHQLSGGELQRVAI 225
Query: 407 ARMCMAAPNFLVLDEPTNHLDIETIEALGKAINK 440
A + +F DEP+++LDI + + I +
Sbjct: 226 AAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRR 259
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 81/178 (45%), Gaps = 39/178 (21%)
Query: 290 KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGT----------RTVHRN 339
K L NV L + + G+ G+GK+TLL+I+ G+I PT+G + RN
Sbjct: 20 KKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRN 79
Query: 340 LKFG-------YFSQHHVDQLDMNLRC-------VQLLEAA--FPGKPQEEYRRQLGGFG 383
+ +F++ D++ ++ V L++ A F G + ++ ++ F
Sbjct: 80 IGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFF- 138
Query: 384 VSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441
LSGG+K RVA A + + P+ L+LDEP LD E L + + K+
Sbjct: 139 ------------LSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKW 184
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 68/135 (50%), Gaps = 7/135 (5%)
Query: 306 ICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEA 365
I IVG NG GKTT +K++ G+ PT G V +L Y Q+ + + + +LL
Sbjct: 385 IGIVGPNGIGKTTFVKMLAGVEEPTEGK--VEWDLTVAYKPQYIKAEYEGTV--YELLSK 440
Query: 366 AFPGKPQEEYRRQ--LGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPT 423
K + + L G+ DL + V LSGG+ RVA A + + +LDEP+
Sbjct: 441 IDSSKLNSNFYKTELLKPLGII-DLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPS 499
Query: 424 NHLDIETIEALGKAI 438
+LD+E A+ +AI
Sbjct: 500 AYLDVEQRLAVSRAI 514
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 69/154 (44%), Gaps = 19/154 (12%)
Query: 306 ICIVGDNGAGKTTLLKIIMGIISPTAG---------TRTVHRNLKFGYFSQHHVDQLD-- 354
+ IVG NG GKTT +KI+ G + P R N YF + ++
Sbjct: 120 VGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPV 179
Query: 355 MNLRCVQLLEAAFPGKPQEEYRR--QLGGFGVSG------DLALQFVGSLSGGQKSRVAF 406
+ + V LL A GK +E ++ ++G F ++ + + LSGG+ RVA
Sbjct: 180 VKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDRELHQLSGGELQRVAI 239
Query: 407 ARMCMAAPNFLVLDEPTNHLDIETIEALGKAINK 440
A + +F DEP+++LDI + + I +
Sbjct: 240 AAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRR 273
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 79/182 (43%), Gaps = 27/182 (14%)
Query: 282 VNFEYVPGKP-ILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN- 339
+ F Y P P IL N+ L I IVG G+GK+TL K+I P G + +
Sbjct: 9 IRFRYKPDSPVILDNINLSIKQGEVIGIVGRAGSGKSTLTKLIQRFYIPENGQVLIDGHD 68
Query: 340 ----------LKFGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEE--YRRQLGGF----- 382
+ G Q D + +N + + A PG E+ Y +L G
Sbjct: 69 LALADPNWLRRQVGVVLQ---DNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFIS 125
Query: 383 ----GVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAI 438
G + + Q G LSGGQ+ R+A AR + P L+ DE T+ LD E+ + + +
Sbjct: 126 ELREGYNTIVGEQGAG-LSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNM 184
Query: 439 NK 440
+K
Sbjct: 185 HK 186
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 81/178 (45%), Gaps = 39/178 (21%)
Query: 290 KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGT----------RTVHRN 339
K L NV L + + G+ G+GK+TLL+I+ G+I PT+G + RN
Sbjct: 22 KKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRN 81
Query: 340 LKFG-------YFSQHHVDQLDMNLRC-------VQLLEAA--FPGKPQEEYRRQLGGFG 383
+ +F++ D++ ++ V L++ A F G + ++ ++ F
Sbjct: 82 IGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFF- 140
Query: 384 VSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441
LSGG+K RVA A + + P+ L+LDEP LD E L + + K+
Sbjct: 141 ------------LSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKW 186
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 73/160 (45%), Gaps = 20/160 (12%)
Query: 287 VPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGT------------- 333
+ G IL + L + I+G +G+GK+TLL I+ + +PT G
Sbjct: 14 IRGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNE 73
Query: 334 --RTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQ----LGGFGVSGD 387
++ RN K G+ Q H ++ ++ GKP++E + + L G+
Sbjct: 74 KELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDK 133
Query: 388 LALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD 427
L+ + LSGG++ RVA AR P L DEPT +LD
Sbjct: 134 LSRKPY-ELSGGEQQRVAIARALANEPILLFADEPTGNLD 172
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 75/172 (43%), Gaps = 27/172 (15%)
Query: 282 VNFEYVPGKP-ILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN- 339
+ F Y P P IL N+ L I IVG +G+GK+TL K+I P G + +
Sbjct: 13 IRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHD 72
Query: 340 ----------LKFGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEE--YRRQLGGF----- 382
+ G Q D + +N + + A PG E+ Y +L G
Sbjct: 73 LALADPNWLRRQVGVVLQ---DNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFIS 129
Query: 383 ----GVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIET 430
G + + Q G LSGGQ+ R+A AR + P L+ D+ T+ LD E+
Sbjct: 130 ELREGYNTIVGEQGAG-LSGGQRQRIAIARALVNNPKILIFDQATSALDYES 180
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 80/195 (41%), Gaps = 43/195 (22%)
Query: 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRT 335
+L V+F Y + IL ++ A S I G +G GK+T+ ++ PTAG T
Sbjct: 1 MLSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEIT 60
Query: 336 V-----------HRNLKFGYFSQHHV----------------DQLDMNLRCVQLLEAAFP 368
+ + + G+ SQ D D +L Q+L+ AF
Sbjct: 61 IDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLW--QVLDLAFA 118
Query: 369 GKPQEEYRRQL----GGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTN 424
E QL G GV +SGGQ+ R+A AR + P L+LDE T
Sbjct: 119 RSFVENMPDQLNTEVGERGVK----------ISGGQRQRLAIARAFLRNPKILMLDEATA 168
Query: 425 HLDIETIEALGKAIN 439
LD E+ + KA++
Sbjct: 169 SLDSESESMVQKALD 183
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 52/156 (33%), Positives = 71/156 (45%), Gaps = 25/156 (16%)
Query: 293 LTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAG-----TRTVHRN-------- 339
L NV + R I+G +GAGKTT ++II G+ P+ G R V N
Sbjct: 21 LDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPE 80
Query: 340 -LKFGYFSQHHVDQLDMNLRCVQLLEAAFP----GKPQEEYRRQLGGFGVSGDL---ALQ 391
K G Q L NL + AFP +EE R+++ D+
Sbjct: 81 DRKIGMVFQTW--ALYPNLTAFE--NIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNH 136
Query: 392 FVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD 427
F LSGGQ+ RVA AR + P+ L+LDEP ++LD
Sbjct: 137 FPRELSGGQQQRVALARALVKDPSLLLLDEPFSNLD 172
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
Length = 266
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 85/175 (48%), Gaps = 27/175 (15%)
Query: 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAG-TR 334
+L+ S +++ +V + ++ +V L + I+G NGAGK+TLL+++ G +SP+ G
Sbjct: 11 LLEASHLHY-HVQQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECH 69
Query: 335 TVHRNLKFGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDL-ALQFV 393
+ +NL + + + +R Q E AFP E + +G S D ALQ V
Sbjct: 70 LLGQNLNS--WQPKALARTRAVMR--QYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQV 125
Query: 394 GS--------------LSGGQKSRVAFARMC------MAAPNFLVLDEPTNHLDI 428
+ LSGG++ RV AR+ P +L LDEPT+ LD+
Sbjct: 126 MAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDL 180
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 77/180 (42%), Gaps = 29/180 (16%)
Query: 273 SPPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAG 332
S ++QL ++ GK IL + + + G NGAGKTTLL I+ T+G
Sbjct: 18 SHXLIQLDQIG-RXKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSG 76
Query: 333 T---------------RTVHRNLKFGYFSQHHVDQLDMNLRCVQL-LEAAFPG------- 369
T TV +++ G+ S +++ R + + + AF
Sbjct: 77 TVNLFGKXPGKVGYSAETVRQHI--GFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDI 134
Query: 370 --KPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD 427
+ + E + L G S A Q++G LS G+K RV AR P L+LDEP LD
Sbjct: 135 DDEIRNEAHQLLKLVGXSAK-AQQYIGYLSTGEKQRVXIARALXGQPQVLILDEPAAGLD 193
>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|B Chain B, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|C Chain C, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|D Chain D, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|E Chain E, Crystal Structure Of Human F508a Nbd1 Domain With Atp
Length = 291
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 73/164 (44%), Gaps = 21/164 (12%)
Query: 279 LSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR 338
LS NF + G P+L ++ + + G GAGKT+LL +IMG + P+ G +
Sbjct: 41 LSFSNFSLL-GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEG--KIKH 97
Query: 339 NLKFGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYR-----------RQLGGFGVSGD 387
+ + + SQ + + E G +EYR + F +
Sbjct: 98 SGRISFCSQFSW------IMPGTIKENIIAGVSYDEYRYRSVIKACQLEEDISKFAEKDN 151
Query: 388 LALQFVG-SLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIET 430
+ L G +LSGGQ++R++ AR + +LD P +LD+ T
Sbjct: 152 IVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLT 195
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 54.7 bits (130), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 73/153 (47%), Gaps = 24/153 (15%)
Query: 306 ICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEA 365
+ ++G +G GKTT L++I G+ PT G + FG ++ D N+ V A
Sbjct: 40 LVLLGPSGCGKTTTLRMIAGLEEPTEG------RIYFGDRDVTYLPPKDRNISMVFQSYA 93
Query: 366 -----------AFPGK----PQEEYRRQL---GGFGVSGDLALQFVGSLSGGQKSRVAFA 407
AFP K P++E +++ +L ++ LSGGQ+ RVA A
Sbjct: 94 VWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVA 153
Query: 408 RMCMAAPNFLVLDEPTNHLDIETIEALGKAINK 440
R + P+ L++DEP ++LD + A+ I K
Sbjct: 154 RAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKK 186
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 54.7 bits (130), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 73/153 (47%), Gaps = 24/153 (15%)
Query: 306 ICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEA 365
+ ++G +G GKTT L++I G+ PT G + FG ++ D N+ V A
Sbjct: 41 LVLLGPSGCGKTTTLRMIAGLEEPTEG------RIYFGDRDVTYLPPKDRNISMVFQSYA 94
Query: 366 -----------AFPGK----PQEEYRRQL---GGFGVSGDLALQFVGSLSGGQKSRVAFA 407
AFP K P++E +++ +L ++ LSGGQ+ RVA A
Sbjct: 95 VWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVA 154
Query: 408 RMCMAAPNFLVLDEPTNHLDIETIEALGKAINK 440
R + P+ L++DEP ++LD + A+ I K
Sbjct: 155 RAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKK 187
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 587
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 65/276 (23%), Positives = 114/276 (41%), Gaps = 60/276 (21%)
Query: 206 LKNQQREIEAQRMHREHVQKFIDTFRYNAN------RASSVQSKIKQLERLPELKPIEKE 259
++N Q EI + + ++ + + + N RAS+ ++ LE L E KP +E
Sbjct: 272 VRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNFIVRASASAKRV--LEVLNE-KPAIEE 328
Query: 260 VEVVLKFPDTELLSPPILQLSEVNFEYVPG-KPILTNVCLGATLESRICIVGDNGAGKTT 318
+ L P+ E + V F Y P+L+ V S + ++G+ G+GK+T
Sbjct: 329 ADNALALPNVE----GSVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKST 384
Query: 319 LLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQE----- 373
L+ +I +I P G + VD+LD+ ++ L PQE
Sbjct: 385 LMNLIPRLIDPERG--------------RVEVDELDVRTVKLKDLRGHISAVPQETVLFS 430
Query: 374 ---EYRRQLGGFGVSGDLALQ---------FVGSL---------------SGGQKSRVAF 406
+ + G + D ++ F+ SL SGGQK R++
Sbjct: 431 GTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSI 490
Query: 407 ARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKYT 442
AR + P L+LD+ T+ +D T + + + +YT
Sbjct: 491 ARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYT 526
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 60/233 (25%), Positives = 101/233 (43%), Gaps = 57/233 (24%)
Query: 244 IKQLERLPELKPIEKEVEVVLKFPDTELLSPPIL----QLSEVNFEY--VPGKPILTNVC 297
I+ +E+ PE+ T+ L P +L Q S V F Y P P+L +
Sbjct: 1005 IRIIEKTPEIDSY-----------STQGLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLS 1053
Query: 298 LGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTV------HRNLKF-----GYFS 346
L + +VG +G GK+T+++++ P AG+ + N+++ G S
Sbjct: 1054 LEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVS 1113
Query: 347 QHHV---------DQLDMNLRCV---QLLEAA-------FPGKPQEEYRRQLGGFGVSGD 387
Q + N R V +++ AA F ++Y ++G G
Sbjct: 1114 QEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQ-- 1171
Query: 388 LALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINK 440
LSGGQK R+A AR + P+ L+LDE T+ LD E+ + + +A++K
Sbjct: 1172 --------LSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDK 1216
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 84/190 (44%), Gaps = 32/190 (16%)
Query: 277 LQLSEVNFEYVPGKP--ILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAG-- 332
L+ ++F Y K IL + L + +VG++G GK+T ++++ + P G
Sbjct: 388 LEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMV 447
Query: 333 ------TRTVH-RNLK--FGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQ------EEYRR 377
RT++ R L+ G SQ V L + E G+ E+ +
Sbjct: 448 SIDGQDIRTINVRYLREIIGVVSQEPV------LFATTIAENIRYGREDVTMDEIEKAVK 501
Query: 378 QLGGFGVSGDLALQF---VG----SLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIET 430
+ + L QF VG LSGGQK R+A AR + P L+LDE T+ LD E+
Sbjct: 502 EANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTES 561
Query: 431 IEALGKAINK 440
+ A++K
Sbjct: 562 EAVVQAALDK 571
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 64/128 (50%), Gaps = 5/128 (3%)
Query: 306 ICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKF--GYFSQ-HHVDQLDMNL--RCV 360
+ ++G NG GK+TLL +++GI P G V++++ F +FS LD+ L R
Sbjct: 34 LAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIGFVPQFFSSPFAYSVLDIVLMGRST 93
Query: 361 QLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLD 420
+ A P + Q + LA + SLSGGQ+ + AR + ++LD
Sbjct: 94 HINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLD 153
Query: 421 EPTNHLDI 428
EPT+ LD+
Sbjct: 154 EPTSALDL 161
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 60/233 (25%), Positives = 100/233 (42%), Gaps = 57/233 (24%)
Query: 244 IKQLERLPELKPIEKEVEVVLKFPDTELLSPPIL----QLSEVNFEY--VPGKPILTNVC 297
I+ +E+ PE+ T+ L P +L Q S V F Y P P+L +
Sbjct: 1005 IRIIEKTPEIDSY-----------STQGLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLS 1053
Query: 298 LGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGT------RTVHRNLKF-----GYFS 346
L + +VG +G GK+T+++++ P AG+ N+++ G S
Sbjct: 1054 LEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVS 1113
Query: 347 QHHV---------DQLDMNLRCV---QLLEAA-------FPGKPQEEYRRQLGGFGVSGD 387
Q + N R V +++ AA F ++Y ++G G
Sbjct: 1114 QEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQ-- 1171
Query: 388 LALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINK 440
LSGGQK R+A AR + P+ L+LDE T+ LD E+ + + +A++K
Sbjct: 1172 --------LSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDK 1216
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 84/190 (44%), Gaps = 32/190 (16%)
Query: 277 LQLSEVNFEYVPGKP--ILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAG-- 332
L+ ++F Y K IL + L + +VG++G GK+T ++++ + P G
Sbjct: 388 LEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMV 447
Query: 333 ------TRTVH-RNLK--FGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQ------EEYRR 377
RT++ R L+ G SQ V L + E G+ E+ +
Sbjct: 448 SIDGQDIRTINVRYLREIIGVVSQEPV------LFATTIAENIRYGREDVTMDEIEKAVK 501
Query: 378 QLGGFGVSGDLALQF---VG----SLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIET 430
+ + L QF VG LSGGQK R+A AR + P L+LDE T+ LD E+
Sbjct: 502 EANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTES 561
Query: 431 IEALGKAINK 440
+ A++K
Sbjct: 562 EAVVQAALDK 571
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 70/156 (44%), Gaps = 25/156 (16%)
Query: 293 LTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAG-----TRTVHRN-------- 339
L NV + R I+G +GAGKTT ++II G+ P+ G R V N
Sbjct: 21 LDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPE 80
Query: 340 -LKFGYFSQHHVDQLDMNLRCVQLLEAAFP----GKPQEEYRRQLGGFGVSGDL---ALQ 391
K G Q L NL + AFP +EE R+++ D+
Sbjct: 81 DRKIGMVFQTW--ALYPNLTAFE--NIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNH 136
Query: 392 FVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD 427
F LSG Q+ RVA AR + P+ L+LDEP ++LD
Sbjct: 137 FPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLD 172
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 74/164 (45%), Gaps = 22/164 (13%)
Query: 279 LSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR 338
LS NF + G P+L ++ + + G GAGKT+LL +IMG + P+ G +
Sbjct: 41 LSFSNFSLL-GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEG--KIKH 97
Query: 339 NLKFGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYR-----------RQLGGFGVSGD 387
+ + + SQ+ + ++ G +EYR + F +
Sbjct: 98 SGRISFCSQN-------SWIMPGTIKENIIGVSYDEYRYRSVIKACQLEEDISKFAEKDN 150
Query: 388 LALQFVG-SLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIET 430
+ L G +LSGGQ++R++ AR + +LD P +LD+ T
Sbjct: 151 IVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLT 194
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 57/189 (30%), Positives = 80/189 (42%), Gaps = 25/189 (13%)
Query: 277 LQLSEVNFEYVPGKPI---LTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGT 333
++L V Y G+ I L NV L + I G +G+GK+T L II + PT G
Sbjct: 2 IKLKNVTKTYKXGEEIIYALKNVNLNIKEGEFVSIXGPSGSGKSTXLNIIGCLDKPTEGE 61
Query: 334 RTVH---------------RNLKFGY-FSQHHVDQLDMNLRCVQL-LEAAFPGKPQEEYR 376
+ R K G+ F Q ++ L L V+L L + G E R
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAXSGEER 121
Query: 377 RQ-----LGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETI 431
R+ L + A LSGGQ+ RVA AR P ++ DEPT LD +T
Sbjct: 122 RKRALECLKXAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADEPTGALDSKTG 181
Query: 432 EALGKAINK 440
E + + + K
Sbjct: 182 EKIXQLLKK 190
>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
pdb|2PZF|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
Length = 228
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 66/145 (45%), Gaps = 3/145 (2%)
Query: 289 GKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKF-GYFSQ 347
G P+L ++ + + G GAGKT+LL +IMG + P+ G + F FS
Sbjct: 20 GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSW 79
Query: 348 HHVDQLDMNLRCVQLLEAAFPGKPQE-EYRRQLGGFGVSGDLALQFVG-SLSGGQKSRVA 405
+ N+ V E + + + + F ++ L G +LSGGQ++R++
Sbjct: 80 IMPGTIKENIIGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARIS 139
Query: 406 FARMCMAAPNFLVLDEPTNHLDIET 430
AR + +LD P +LD+ T
Sbjct: 140 LARAVYKDADLYLLDSPFGYLDVLT 164
>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
pdb|2PZG|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
Length = 241
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 69/154 (44%), Gaps = 20/154 (12%)
Query: 289 GKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQH 348
G P+L ++ + + G GAGKT+LL +IMG + P+ G + + + + SQ
Sbjct: 32 GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEG--KIKHSGRISFCSQF 89
Query: 349 HVDQLDMNLRCVQLLEAAFPGKPQEEYRRQ-----------LGGFGVSGDLALQFVG-SL 396
+ + E G +EYR + + F ++ L G +L
Sbjct: 90 SW------IMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITL 143
Query: 397 SGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIET 430
SGGQ++R++ AR + +LD P +LD+ T
Sbjct: 144 SGGQRARISLARAVYKDADLYLLDSPFGYLDVLT 177
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 62/141 (43%), Gaps = 22/141 (15%)
Query: 306 ICIVGDNGAGKTTLLKIIMGIISPTAGTRTV-----------HRNL-----KFGYFSQHH 349
+ ++G +G+GKTT+L++I G+ PT G + RN+ + F
Sbjct: 44 VGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNVGLVFQNYALFQHMT 103
Query: 350 V-DQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFAR 408
V D + LR E P + R+L F A +F LSGGQ+ RVA AR
Sbjct: 104 VYDNVSFGLR-----EKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALAR 158
Query: 409 MCMAAPNFLVLDEPTNHLDIE 429
P L+ DEP +D +
Sbjct: 159 ALAPRPQVLLFDEPFAAIDTQ 179
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 78/172 (45%), Gaps = 28/172 (16%)
Query: 293 LTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVD- 351
L NV L ++G +GAGK+TL++ + + PT G+ V + S+ +
Sbjct: 21 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQ-ELTTLSESELTK 79
Query: 352 ---QLDMNLRCVQLLEA-------AFP----GKPQEEYRRQ------LGGFGVSGDLALQ 391
Q+ M + LL + A P P++E +R+ L G G D
Sbjct: 80 ARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHD---S 136
Query: 392 FVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIET---IEALGKAINK 440
+ +LSGGQK RVA AR + P L+ DE T+ LD T I L K IN+
Sbjct: 137 YPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINR 188
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 86/193 (44%), Gaps = 31/193 (16%)
Query: 276 ILQLSEVNFEYVPGKPI---LTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAG 332
+++L V Y G+ I L NV L + I+G +G+GK+T+L II + PT G
Sbjct: 1 MIKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEG 60
Query: 333 TRTVH---------------RNLKFGY-FSQHHVDQLDMNLRCVQL-----LEAAFPGKP 371
+ R K G+ F Q ++ L L V+L A G
Sbjct: 61 EVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSG-- 118
Query: 372 QEEYRRQLGGFGVSGDLALQFVG----SLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD 427
+E +R L ++ +L +F LSGGQ+ RVA AR P ++ D+PT LD
Sbjct: 119 EERRKRALECLKMA-ELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALD 177
Query: 428 IETIEALGKAINK 440
+T E + + + K
Sbjct: 178 SKTGEKIMQLLKK 190
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 62/142 (43%), Gaps = 29/142 (20%)
Query: 308 IVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLL---E 364
++G NGAGKTT L+II +I P++G TV F ++ V++ + + L
Sbjct: 46 LIGPNGAGKTTTLRIISTLIKPSSGIVTV--------FGKNVVEEPHEVRKLISYLPEEA 97
Query: 365 AAFPGKPQEEYRRQLGGFGVS------------------GDLALQFVGSLSGGQKSRVAF 406
A+ EY R + GF S G+ V + S G ++
Sbjct: 98 GAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLI 157
Query: 407 ARMCMAAPNFLVLDEPTNHLDI 428
AR M P +LDEPT+ LD+
Sbjct: 158 ARALMVNPRLAILDEPTSGLDV 179
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 69/154 (44%), Gaps = 21/154 (13%)
Query: 289 GKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQH 348
G P+L ++ + + G GAGKT+LL +IMG + P+ G + + + + SQ+
Sbjct: 50 GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEG--KIKHSGRISFCSQN 107
Query: 349 HVDQLDMNLRCVQLLEAAFPGKPQEEYR-----------RQLGGFGVSGDLALQFVG-SL 396
+ ++ G +EYR + F ++ L G +L
Sbjct: 108 -------SWIMPGTIKENIIGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITL 160
Query: 397 SGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIET 430
SGGQ++R++ AR + +LD P +LD+ T
Sbjct: 161 SGGQRARISLARAVYKDADLYLLDSPFGYLDVLT 194
>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
pdb|2PZE|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
Length = 229
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 69/154 (44%), Gaps = 20/154 (12%)
Query: 289 GKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQH 348
G P+L ++ + + G GAGKT+LL +IMG + P+ G + + + + SQ
Sbjct: 20 GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEG--KIKHSGRISFCSQF 77
Query: 349 HVDQLDMNLRCVQLLEAAFPGKPQEEYRRQ-----------LGGFGVSGDLALQFVG-SL 396
+ + E G +EYR + + F ++ L G +L
Sbjct: 78 SW------IMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITL 131
Query: 397 SGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIET 430
SGGQ++R++ AR + +LD P +LD+ T
Sbjct: 132 SGGQRARISLARAVYKDADLYLLDSPFGYLDVLT 165
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
Length = 285
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 68/147 (46%), Gaps = 3/147 (2%)
Query: 289 GKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKF-GYFSQ 347
G P+L N+ L + I G G+GKT+LL +I+G + + G + F FS
Sbjct: 50 GNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSW 109
Query: 348 HHVDQLDMNLRCVQLLEAAFPGKPQE-EYRRQLGGFGVSGDLALQFVG-SLSGGQKSRVA 405
+ N+ V E + + + ++ + F + L G +LSGGQ++R++
Sbjct: 110 IMPGTIKENIIGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARIS 169
Query: 406 FARMCMAAPNFLVLDEPTNHLDIETIE 432
AR + +LD P +LD+ T E
Sbjct: 170 LARAVYKDADLYLLDSPFGYLDVFTEE 196
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 69/156 (44%), Gaps = 20/156 (12%)
Query: 289 GKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQH 348
G P+L N+ L + I G G+GKT+LL +I+G + + G + + + + SQ
Sbjct: 50 GNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEG--IIKHSGRVSFCSQF 107
Query: 349 HVDQLDMNLRCVQLLEAAFPGKPQEEYR-----------RQLGGFGVSGDLALQFVG-SL 396
+ + E G +EYR + + F + L G +L
Sbjct: 108 SW------IMPGTIKENIISGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTL 161
Query: 397 SGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIE 432
SGGQ++R++ AR + +LD P +LD+ T E
Sbjct: 162 SGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEE 197
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
Length = 286
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 71/163 (43%), Gaps = 34/163 (20%)
Query: 289 GKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGT--------------- 333
G P+L N+ L + I G G+GKT+LL +I+G + + G
Sbjct: 50 GNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSW 109
Query: 334 ---RTVHRNLKFGY-FSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLA 389
T+ N+ FG + ++ + ++ QL + K E+ LG GV
Sbjct: 110 IMPGTIKENIIFGVSYDEYRYKSV---VKACQLQQDI--TKFAEQDNTVLGEGGV----- 159
Query: 390 LQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIE 432
+LSGGQ++R++ AR + +LD P +LD+ T E
Sbjct: 160 -----TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEE 197
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 71/163 (43%), Gaps = 34/163 (20%)
Query: 289 GKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGT--------------- 333
G P+L N+ L + I G G+GKT+LL +I+G + + G
Sbjct: 50 GNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSW 109
Query: 334 ---RTVHRNLKFGY-FSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLA 389
T+ N+ FG + ++ + ++ QL + K E+ LG GV
Sbjct: 110 IMPGTIKENIIFGVSYDEYRYKSV---VKACQLQQDI--TKFAEQDNTVLGEGGV----- 159
Query: 390 LQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIE 432
+LSGGQ++R++ AR + +LD P +LD+ T E
Sbjct: 160 -----TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEE 197
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 86/193 (44%), Gaps = 31/193 (16%)
Query: 276 ILQLSEVNFEYVPGKPI---LTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAG 332
+++L V Y G+ I L NV L + I+G +G+GK+T+L II + PT G
Sbjct: 1 MVKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEG 60
Query: 333 TRTVH---------------RNLKFGY-FSQHHVDQLDMNLRCVQL-----LEAAFPGKP 371
+ R K G+ F Q ++ L L V+L A G
Sbjct: 61 EVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSG-- 118
Query: 372 QEEYRRQLGGFGVSGDLALQFVG----SLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD 427
+E +R L ++ +L +F LSGGQ+ RVA AR P ++ D+PT LD
Sbjct: 119 EERRKRALECLKMA-ELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALD 177
Query: 428 IETIEALGKAINK 440
+T E + + + K
Sbjct: 178 SKTGEKIMQLLKK 190
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 78/172 (45%), Gaps = 28/172 (16%)
Query: 293 LTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVD- 351
L NV L ++G +GAGK+TL++ + + PT G+ V + S+ +
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQ-ELTTLSESELTK 102
Query: 352 ---QLDMNLRCVQLLEA-------AFP----GKPQEEYRRQ------LGGFGVSGDLALQ 391
Q+ M + LL + A P P++E +R+ L G G D
Sbjct: 103 ARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHD---S 159
Query: 392 FVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIET---IEALGKAINK 440
+ +LSGGQK RVA AR + P L+ D+ T+ LD T I L K IN+
Sbjct: 160 YPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINR 211
>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant
pdb|1XFA|B Chain B, Structure Of Nbd1 From Murine Cftr- F508r Mutant
Length = 283
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 69/156 (44%), Gaps = 20/156 (12%)
Query: 289 GKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQH 348
G P+L N+ L + I G G+GKT+LL +I+G + + G + + + + SQ
Sbjct: 50 GNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEG--IIKHSGRVSFCSQF 107
Query: 349 HVDQLDMNLRCVQLLEAAFPGKPQEEYR-----------RQLGGFGVSGDLALQFVG-SL 396
+ + E G +EYR + + F + L G +L
Sbjct: 108 SW------IMPGTIKENIIRGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTL 161
Query: 397 SGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIE 432
SGGQ++R++ AR + +LD P +LD+ T E
Sbjct: 162 SGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEE 197
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 82/188 (43%), Gaps = 28/188 (14%)
Query: 277 LQLSEVNFEY--VPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTR 334
+ + V+F Y P PIL + L + +VG +G GK+T++ +++ G
Sbjct: 416 ITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKI 475
Query: 335 TVHR------NLKFGYFSQHHVDQLDMNLRCV--------------QLLEAAFPGKPQEE 374
T+ NL+F + V Q C + + AA E+
Sbjct: 476 TIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKEGITREEMVAACKMANAEK 535
Query: 375 YRRQL--GGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIE 432
+ + L G + GD Q LSGGQK R+A AR + P L+LDE T+ LD E+
Sbjct: 536 FIKTLPNGYNTLVGDRGTQ----LSGGQKQRIAIARALVRNPKILLLDEATSALDAESEG 591
Query: 433 ALGKAINK 440
+ +A++K
Sbjct: 592 IVQQALDK 599
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 31/45 (68%)
Query: 396 LSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINK 440
LSGGQK R+A AR + P L+LDE T+ LD E+ + + +A+++
Sbjct: 1218 LSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDR 1262
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 77/186 (41%), Gaps = 43/186 (23%)
Query: 277 LQLSEVNFEYV--PGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTR 334
L+ V+F Y P PI + L S +VG +G+GK+T+L +++ + P +GT
Sbjct: 373 LEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTI 432
Query: 335 TVH----RNL-------KFGYFSQHHV---------------DQLDMNLRCVQLLE---- 364
++ R L K G SQ + D + +Q +
Sbjct: 433 SLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVAN 492
Query: 365 -AAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPT 423
AF + + +G GV LSGGQK R+A AR + P L+LDE T
Sbjct: 493 AVAFIRNFPQGFNTVVGEKGVL----------LSGGQKQRIAIARALLKNPKILLLDEAT 542
Query: 424 NHLDIE 429
+ LD E
Sbjct: 543 SALDAE 548
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 77/186 (41%), Gaps = 43/186 (23%)
Query: 277 LQLSEVNFEYV--PGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTR 334
L+ V+F Y P PI + L S +VG +G+GK+T+L +++ + P +GT
Sbjct: 342 LEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTI 401
Query: 335 TVH----RNL-------KFGYFSQHHV---------------DQLDMNLRCVQLLE---- 364
++ R L K G SQ + D + +Q +
Sbjct: 402 SLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVAN 461
Query: 365 -AAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPT 423
AF + + +G GV LSGGQK R+A AR + P L+LDE T
Sbjct: 462 AVAFIRNFPQGFNTVVGEKGVL----------LSGGQKQRIAIARALLKNPKILLLDEAT 511
Query: 424 NHLDIE 429
+ LD E
Sbjct: 512 SALDAE 517
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 87/192 (45%), Gaps = 39/192 (20%)
Query: 277 LQLSEVNFEYVPGK-PILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRT 335
+ + V+F+Y + PIL ++ L + VG +G GK+TL+ +I T+G
Sbjct: 340 IDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQIL 399
Query: 336 VH-RNLK----------FGYFSQHHV---DQLDMNLRC-------VQLLEAA-------F 367
+ N+K G Q ++ D + N+ +++EAA F
Sbjct: 400 IDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDF 459
Query: 368 PGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD 427
+ Y ++G GV LSGGQK R++ AR+ + P L+LDE T+ LD
Sbjct: 460 IMNLPQGYDTEVGERGVK----------LSGGQKQRLSIARIFLNNPPILILDEATSALD 509
Query: 428 IETIEALGKAIN 439
+E+ + +A++
Sbjct: 510 LESESIIQEALD 521
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 75/177 (42%), Gaps = 38/177 (21%)
Query: 293 LTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTV--------------HR 338
L NV L ++G +GAGK+TL++ + + PT G+ V
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 103
Query: 339 NLKFGYFSQHHVDQLDMNLRCVQLL--EAAFP----GKPQEEYRRQ------LGGFGVSG 386
+ G QH NL + + A P P++E +R+ L G G
Sbjct: 104 RRQIGXIFQH------FNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKH 157
Query: 387 DLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIET---IEALGKAINK 440
D + +LSGGQK RVA AR + P L+ D+ T+ LD T I L K IN+
Sbjct: 158 D---SYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINR 211
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 74/161 (45%), Gaps = 30/161 (18%)
Query: 295 NVCLGATLESRICIV-GDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQL 353
NV G +S I ++ G+NG GKTTL+K++ G + P G + +L
Sbjct: 369 NVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEG---------------QDIPKL 413
Query: 354 DMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVS-------------GDLALQFVGSLSGGQ 400
+++++ Q + FPG ++ + +++ G ++ D+ Q V LSGG+
Sbjct: 414 NVSMK-PQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRIDDIIDQEVQHLSGGE 472
Query: 401 KSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441
RVA + ++DEP+ +LD E K I ++
Sbjct: 473 LQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRF 513
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 62/151 (41%), Gaps = 32/151 (21%)
Query: 308 IVGDNGAGKTTLLKIIMGIISPTAG------------------------TRTVHRNLKFG 343
+VG NG GK+T LKI+ G P G T+ + ++K
Sbjct: 108 LVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIK-A 166
Query: 344 YFSQHHVDQLDMNLR-----CVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSG 398
+VD + ++ +LL+ P E+ +R + + L + LSG
Sbjct: 167 IIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSP-EDVKRYIKILQLENVLKRD-IEKLSG 224
Query: 399 GQKSRVAFARMCMAAPNFLVLDEPTNHLDIE 429
G+ R A C+ + + DEP+++LD++
Sbjct: 225 GELQRFAIGMSCVQEADVYMFDEPSSYLDVK 255
>pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain
With Atp
Length = 290
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 65/145 (44%), Gaps = 3/145 (2%)
Query: 289 GKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKF-GYFSQ 347
G P+L ++ + + G GAGKT+LL +IMG + P+ G + F FS
Sbjct: 50 GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSW 109
Query: 348 HHVDQLDMNLRCVQLLEAAFPGKPQE-EYRRQLGGFGVSGDLALQFVG-SLSGGQKSRVA 405
+ N+ V E + + + + F ++ L G +LS GQ+++++
Sbjct: 110 IMPGTIKENIIGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSEGQQAKIS 169
Query: 406 FARMCMAAPNFLVLDEPTNHLDIET 430
AR + +LD P +LD+ T
Sbjct: 170 LARAVYKDADLYLLDSPFGYLDVLT 194
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 69/154 (44%), Gaps = 19/154 (12%)
Query: 293 LTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAG---------TRTVHRNLKFG 343
L N+ L I+G GAGKT L++I G P +G T
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIA 75
Query: 344 YFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVG-----SLSG 398
+ Q++ MN++ + LE K ++ +R L + DL ++ + +LSG
Sbjct: 76 FVYQNYSLFPHMNVK--KNLEFGMRMKKIKDPKRVLD---TARDLKIEHLLDRNPLTLSG 130
Query: 399 GQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIE 432
G++ RVA AR + P L+LDEP + LD T E
Sbjct: 131 GEQQRVALARALVTNPKILLLDEPLSALDPRTQE 164
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 82/191 (42%), Gaps = 35/191 (18%)
Query: 267 PDTELLSP----PILQLSEVNFEYVPGKPILTNVCLGATLESR----ICIVGDNGAGKTT 318
P + LL+P ++Q +V+F Y P +P + V G T R +VG NG+GK+T
Sbjct: 1 PPSGLLTPLHLEGLVQFQDVSFAY-PNRPDVL-VLQGLTFTLRPGEVTALVGPNGSGKST 58
Query: 319 LLKIIMGIISPTAGT-------------RTVHRNLK--------FGYFSQHHVDQLDMNL 357
+ ++ + PT G R +HR + FG Q ++
Sbjct: 59 VAALLQNLYQPTGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQK 118
Query: 358 RCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGS-LSGGQKSRVAFARMCMAAPNF 416
++ + AA + + G D + GS LSGGQ+ VA AR + P
Sbjct: 119 PTMEEITAAAVKSGAHSF---ISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCV 175
Query: 417 LVLDEPTNHLD 427
L+LD+ T+ LD
Sbjct: 176 LILDDATSALD 186
>pdb|2BBO|A Chain A, Human Nbd1 With Phe508
Length = 291
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 67/154 (43%), Gaps = 20/154 (12%)
Query: 289 GKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQH 348
G P+L ++ + + G GAGKT+LL +IMG + P+ G + + + + SQ
Sbjct: 50 GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEG--KIKHSGRISFCSQF 107
Query: 349 HVDQLDMNLRCVQLLEAAFPGKPQEEYR-----------RQLGGFGVSGDLALQFVG-SL 396
+ + E G +EYR + F ++ L G +L
Sbjct: 108 SW------IMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITL 161
Query: 397 SGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIET 430
S GQ+++++ AR + +LD P +LD+ T
Sbjct: 162 SEGQQAKISLARAVYKDADLYLLDSPFGYLDVLT 195
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 63/147 (42%), Gaps = 38/147 (25%)
Query: 306 ICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLL-- 363
+ ++G +G GKTT L ++ GI PT+G YF V+ + R V ++
Sbjct: 32 VALLGPSGCGKTTTLLMLAGIYKPTSGEI---------YFDDVLVNDIPPKYREVGMVFQ 82
Query: 364 ------------EAAFPGKPQE-----------EYRRQLGGFGVSGDLALQFVGSLSGGQ 400
AFP + + E R+L + +L + LSGGQ
Sbjct: 83 NYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKL----LIDNLLDRKPTQLSGGQ 138
Query: 401 KSRVAFARMCMAAPNFLVLDEPTNHLD 427
+ RVA AR + P L+ DEP ++LD
Sbjct: 139 QQRVALARALVKQPKVLLFDEPLSNLD 165
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/197 (23%), Positives = 77/197 (39%), Gaps = 46/197 (23%)
Query: 277 LQLSEVNFEYVPGK--PILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAG-- 332
++ V F Y PG+ P L N+ L + +VG +G+GK+T+ +I G
Sbjct: 342 VEFRNVTFTY-PGRDVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGEI 400
Query: 333 -----------------------------TRTVHRNLKFGYFSQHHVDQLDMNLRCVQLL 363
TV N+ + Q+ +Q++ R +
Sbjct: 401 LMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEQYSREQIEEAARMAYAM 460
Query: 364 EAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPT 423
+ F K +G GV LSGGQ+ R+A AR + L+LDE T
Sbjct: 461 D--FINKMDNGLDTVIGENGVL----------LSGGQRQRIAIARALLRDSPILILDEAT 508
Query: 424 NHLDIETIEALGKAINK 440
+ LD E+ A+ A+++
Sbjct: 509 SALDTESERAIQAALDE 525
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 598
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/234 (22%), Positives = 96/234 (41%), Gaps = 38/234 (16%)
Query: 234 ANRASSVQSKIKQLERLPELKPIEKEVEVVLKFPDTELLSPPILQLSEVN---------F 284
+N+ + +Q + ER+ E+ +E+E + P ++L EV F
Sbjct: 314 SNQFNMIQMALASAERIFEILDLEEEKD-----------DPDAVELREVRGEIEFKNVWF 362
Query: 285 EYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAG--------TRTV 336
Y KP+L ++ ++ +VG G+GKTT++ ++M G R +
Sbjct: 363 SYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKI 422
Query: 337 HRNLKFGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQ---------LGGFGVSGD 387
R+ D + + + L+ PG EE + + +
Sbjct: 423 KRSSLRSSIGIVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYE 482
Query: 388 LALQFVG-SLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINK 440
L G LS GQ+ +A R +A P L+LDE T+++D +T +++ A+ K
Sbjct: 483 TVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWK 536
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 65/143 (45%), Gaps = 13/143 (9%)
Query: 306 ICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEA 365
I I+G NG GKTT +I++G I+ G+ T + + Y Q D ++ Q LE
Sbjct: 297 IGILGPNGIGKTTFARILVGEITADEGSVTPEKQI-LSYKPQRIFPNYDGTVQ--QYLEN 353
Query: 366 AFPGKPQ------EEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVL 419
A EE ++L L V LSGG+ ++ A + VL
Sbjct: 354 ASKDALSTSSWFFEEVTKRLN----LHRLLESNVNDLSGGELQKLYIAATLAKEADLYVL 409
Query: 420 DEPTNHLDIETIEALGKAINKYT 442
D+P+++LD+E + KAI + T
Sbjct: 410 DQPSSYLDVEERYIVAKAIKRVT 432
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 71/165 (43%), Gaps = 28/165 (16%)
Query: 306 ICIVGDNGAGKTTLLKIIMGIISPT-------AGTRTVHRNLK----FGYFSQHHVDQLD 354
+ ++G NG GKTT+LKI+ G I P G V + + + YF + + ++L
Sbjct: 28 LGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELK 87
Query: 355 MNLRCVQLLEAA--FPGKPQEEYRRQLGGFGVSGD---------LALQFVGSLSGGQKSR 403
+ + +Q +E A F E ++ G + L + LSGG R
Sbjct: 88 I-VHKIQYVEYASKFLKGTVNEILTKIDERGKKDEVKELLNMTNLWNKDANILSGGGLQR 146
Query: 404 VAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAI-----NKYTF 443
+ A + + + D+P+++LD+ + KAI NKY
Sbjct: 147 LLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVI 191
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/197 (23%), Positives = 77/197 (39%), Gaps = 46/197 (23%)
Query: 277 LQLSEVNFEYVPGK--PILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAG-- 332
L+ V F Y PG+ P L N+ L + +VG +G+GK+T+ +I G
Sbjct: 342 LEFRNVTFTY-PGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHI 400
Query: 333 -----------------------------TRTVHRNLKFGYFSQHHVDQLDMNLRCVQLL 363
TV N+ + ++ +Q++ R +
Sbjct: 401 LMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAM 460
Query: 364 EAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPT 423
+ F K +G GV LSGGQ+ R+A AR + L+LDE T
Sbjct: 461 D--FINKMDNGLDTIIGENGVL----------LSGGQRQRIAIARALLRDSPILILDEAT 508
Query: 424 NHLDIETIEALGKAINK 440
+ LD E+ A+ A+++
Sbjct: 509 SALDTESERAIQAALDE 525
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 64/141 (45%), Gaps = 20/141 (14%)
Query: 306 ICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNL----KFGYFSQHHVDQLDMNLRCVQ 361
+ ++G +G GKTT L+ I G+ PT G + NL + G F + +
Sbjct: 35 LVLLGPSGCGKTTTLRXIAGLEEPTRGQIYIEDNLVADPEKGVFVPPKERDVAXVFQSYA 94
Query: 362 LL-------EAAFPGK----PQEEYRRQL----GGFGVSGDLALQFVGSLSGGQKSRVAF 406
L AFP K P++E +++ G++ +L + LSGGQ+ RVA
Sbjct: 95 LYPHXTVYDNIAFPLKLRKVPKQEIDKRVREVAEXLGLT-ELLNRKPRELSGGQRQRVAL 153
Query: 407 ARMCMAAPNFLVLDEPTNHLD 427
R + P + DEP ++LD
Sbjct: 154 GRAIIRRPKVFLXDEPLSNLD 174
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 78/188 (41%), Gaps = 28/188 (14%)
Query: 277 LQLSEVNFEYVPG-KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRT 335
+ + +V F Y KP L++V + +VG +G+GK+T+ + +G+
Sbjct: 342 VDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSIC 401
Query: 336 VH----RNLKFGYFSQHHVDQLDMNLRCVQLLEAAFPGK----PQEEYRRQLGGFGVSGD 387
+ R+ K +H + + V L + EY R+
Sbjct: 402 LDGHDVRDYKLTNLRRHFA----LVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQA 457
Query: 388 LALQFV---------------GSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIE 432
A++F+ SLSGGQ+ RVA AR + L+LDE T+ LD E+
Sbjct: 458 HAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESER 517
Query: 433 ALGKAINK 440
A+ A+++
Sbjct: 518 AIQAALDE 525
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 63/140 (45%), Gaps = 18/140 (12%)
Query: 306 ICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNL----KFGYFSQHHVDQLDMNLRCVQ 361
+ ++G +G GKTT L++I G+ P+ G + L + G F + M +
Sbjct: 32 MILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYA 91
Query: 362 LL-------EAAFPGK----PQEEYR---RQLGGFGVSGDLALQFVGSLSGGQKSRVAFA 407
L AFP K P++E R++ +L + LSGGQ+ RVA
Sbjct: 92 LYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALG 151
Query: 408 RMCMAAPNFLVLDEPTNHLD 427
R + P ++DEP ++LD
Sbjct: 152 RAIVRKPQVFLMDEPLSNLD 171
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 62/136 (45%), Gaps = 16/136 (11%)
Query: 306 ICIVGDNGAGKTTLLKIIMGIISPTAG-----------TRTVHRNLKFGYFSQHHVDQLD 354
+ VG +G GK+TLL++I G+ + T+G T R + + S L
Sbjct: 32 VVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLS 91
Query: 355 MNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQF---VGSLSGGQKSRVAFARMCM 411
+ L+ A G +E +++ LA +LSGGQ+ RVA R +
Sbjct: 92 VAENMSFGLKLA--GAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLV 149
Query: 412 AAPNFLVLDEPTNHLD 427
A P+ +LDEP ++LD
Sbjct: 150 AEPSVFLLDEPLSNLD 165
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 62/136 (45%), Gaps = 16/136 (11%)
Query: 306 ICIVGDNGAGKTTLLKIIMGIISPTAG-----------TRTVHRNLKFGYFSQHHVDQLD 354
+ VG +G GK+TLL++I G+ + T+G T R + + S L
Sbjct: 32 VVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLS 91
Query: 355 MNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQF---VGSLSGGQKSRVAFARMCM 411
+ L+ A G +E +++ LA +LSGGQ+ RVA R +
Sbjct: 92 VAENMSFGLKLA--GAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLV 149
Query: 412 AAPNFLVLDEPTNHLD 427
A P+ +LDEP ++LD
Sbjct: 150 AEPSVFLLDEPLSNLD 165
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 26/45 (57%)
Query: 387 DLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETI 431
D A + SLSGGQ RVA AR P ++ DEPT+ LD E +
Sbjct: 130 DKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMV 174
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 26/45 (57%)
Query: 387 DLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETI 431
D A + SLSGGQ RVA AR P ++ DEPT+ LD E +
Sbjct: 151 DKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMV 195
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 62/136 (45%), Gaps = 16/136 (11%)
Query: 306 ICIVGDNGAGKTTLLKIIMGIISPTAG-----------TRTVHRNLKFGYFSQHHVDQLD 354
+ VG +G GK+TLL++I G+ + T+G T R + + S L
Sbjct: 32 VVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLS 91
Query: 355 MNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQF---VGSLSGGQKSRVAFARMCM 411
+ L+ A G +E +++ LA +LSGGQ+ RVA R +
Sbjct: 92 VAENMSFGLKLA--GAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLV 149
Query: 412 AAPNFLVLDEPTNHLD 427
A P+ +LD+P ++LD
Sbjct: 150 AEPSVFLLDQPLSNLD 165
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 69/153 (45%), Gaps = 16/153 (10%)
Query: 291 PILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAG-------------TRTVH 337
P+L ++ L + I+G +G GKTTLL+ + G P +G T
Sbjct: 18 PVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPV 77
Query: 338 RNLKFGYFSQHHVDQLDMNL-RCVQLLEAAFPGKPQEEYRRQLGGFGVSG--DLALQFVG 394
R + GY Q V + + R + G+ +E +R ++G +LA ++
Sbjct: 78 RERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPH 137
Query: 395 SLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD 427
LSGGQ+ R A AR P ++LDEP + LD
Sbjct: 138 ELSGGQQQRAALARALAPDPELILLDEPFSALD 170
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 24/36 (66%)
Query: 396 LSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETI 431
LSGGQ+ RV+ AR P+ L+ DEPT+ LD E +
Sbjct: 154 LSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELV 189
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 58/151 (38%), Gaps = 51/151 (33%)
Query: 306 ICIVGDNGAGKTTLLKIIMGIISPTAGT-------------------------------- 333
+ ++G NGAGKTT L I G++ G
Sbjct: 35 VTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRXGIALVPEGRRIFP 94
Query: 334 -RTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQF 392
TV+ NL G +++ + + +L + L FP +E +QLGG
Sbjct: 95 ELTVYENLXXGAYNRKDKEGIKRDLEWIFSL---FP--RLKERLKQLGG----------- 138
Query: 393 VGSLSGGQKSRVAFARMCMAAPNFLVLDEPT 423
+LSGG++ +A R + P L DEP+
Sbjct: 139 --TLSGGEQQXLAIGRALXSRPKLLXXDEPS 167
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 25/35 (71%)
Query: 396 LSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIET 430
LSGG++ RVA AR + P L+LDEP + +D++T
Sbjct: 127 LSGGERQRVALARALVIQPRLLLLDEPLSAVDLKT 161
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/187 (24%), Positives = 70/187 (37%), Gaps = 36/187 (19%)
Query: 263 VLKFPDTELLSP--PILQ-LSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTL 319
++KF D P P +Q L + F PGK +VG NG+GK+T+
Sbjct: 16 LVKFQDVSFAYPNHPNVQVLQGLTFTLYPGK--------------VTALVGPNGSGKSTV 61
Query: 320 LKIIMGIISPTAGTRTVHRNLKFGY------------------FSQHHVDQLDMNLRCVQ 361
++ + PT G + Y F + + + L
Sbjct: 62 AALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTP 121
Query: 362 LLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGS-LSGGQKSRVAFARMCMAAPNFLVLD 420
+E + + GF D + G+ LSGGQ+ VA AR + P L+LD
Sbjct: 122 TMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILD 181
Query: 421 EPTNHLD 427
+ T+ LD
Sbjct: 182 QATSALD 188
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 45/187 (24%), Positives = 69/187 (36%), Gaps = 36/187 (19%)
Query: 263 VLKFPDTELLSP--PILQ-LSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTL 319
++KF D P P +Q L + F PGK +VG NG+GK+T+
Sbjct: 16 LVKFQDVSFAYPNHPNVQVLQGLTFTLYPGK--------------VTALVGPNGSGKSTV 61
Query: 320 LKIIMGIISPTAGTRTVHRNLKFGY------------------FSQHHVDQLDMNLRCVQ 361
++ + PT G + Y F + + + L
Sbjct: 62 AALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTP 121
Query: 362 LLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGS-LSGGQKSRVAFARMCMAAPNFLVLD 420
+E + + GF D + G+ LSGGQ+ VA AR + P L+LD
Sbjct: 122 TMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILD 181
Query: 421 EPTNHLD 427
T+ LD
Sbjct: 182 NATSALD 188
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
Length = 260
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 26/43 (60%)
Query: 396 LSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAI 438
LSGG++ R+A AR + P ++ DE T+ LD +T KA+
Sbjct: 156 LSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAV 198
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 22/35 (62%)
Query: 396 LSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIET 430
LSGG K RV A + P L+LDEPT+ LD+ T
Sbjct: 155 LSGGMKQRVLIALALLLDPVVLILDEPTSALDVLT 189
>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|D Chain D, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|H Chain H, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|I Chain I, Crystal Structure Of E159q Mutant Of Btucdf
Length = 249
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 61/159 (38%), Gaps = 29/159 (18%)
Query: 306 ICIVGDNGAGKTTLLKIIMGIIS----------PTAGTRTVHRNLKFGYFSQHHVDQLDM 355
+ +VG NGAGK+TLL + G+ S P L Y SQ
Sbjct: 29 LHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFAT 88
Query: 356 NLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLAL-----QFVGSLSGGQKSRVAFARMC 410
+ L Q + R V+G LAL + LSGG+ RV A +
Sbjct: 89 PVWHYLTLH-------QHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVV 141
Query: 411 M-------AAPNFLVLDEPTNHLDIETIEALGKAINKYT 442
+ A L+LD+P N LD+ AL K ++ +
Sbjct: 142 LQITPQANPAGQLLLLDQPMNSLDVAQQSALDKILSALS 180
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 61/158 (38%), Gaps = 36/158 (22%)
Query: 295 NVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN--------LKFGYFS 346
+VC G I+G NG+GK+TL+ +I G + G R N + ++
Sbjct: 29 SVCKGDV----TLIIGPNGSGKSTLINVITGFLKADEG-RVYFENKDITNKEPAELYHYG 83
Query: 347 QHHVDQLDMNLRCVQLLEAAFPGK-----------------PQEEYRRQLGGFGVSGDLA 389
Q L+ + +LE G+ P+EE + F + L
Sbjct: 84 IVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVE-KAFKILEFLK 142
Query: 390 LQFV-----GSLSGGQKSRVAFARMCMAAPNFLVLDEP 422
L + G LSGGQ V R M P +V+DEP
Sbjct: 143 LSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEP 180
>pdb|1SG4|A Chain A, Crystal Structure Of Human Mitochondrial Delta3-delta2-
Enoyl-coa Isomerase
pdb|1SG4|B Chain B, Crystal Structure Of Human Mitochondrial Delta3-delta2-
Enoyl-coa Isomerase
pdb|1SG4|C Chain C, Crystal Structure Of Human Mitochondrial Delta3-delta2-
Enoyl-coa Isomerase
Length = 260
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 8/66 (12%)
Query: 100 LTQVFAELEAIEADKA-------PARASVILAGLGFTPEMQKRATKHFSGGWRKMAIIWL 152
LT++ LE +E DK+ R V AGL T EM R+ H++G W+ + +WL
Sbjct: 33 LTELVISLEKLENDKSFRGVILTSDRPGVFSAGLDLT-EMCGRSPAHYAGYWKAVQELWL 91
Query: 153 ENYLQN 158
Y N
Sbjct: 92 RLYQSN 97
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 57/146 (39%), Gaps = 32/146 (21%)
Query: 307 CIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN--------LKFGYFSQHHVDQLDMNLR 358
I+G NG+GK+TL+ +I G + G R N + ++ Q L+
Sbjct: 37 LIIGPNGSGKSTLINVITGFLKADEG-RVYFENKDITNKEPAELYHYGIVRTFQTPQPLK 95
Query: 359 CVQLLEAAFPGK-----------------PQEEYRRQLGGFGVSGDLALQFV-----GSL 396
+ +LE G+ P+EE + F + L L + G L
Sbjct: 96 EMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVE-KAFKILEFLKLSHLYDRKAGEL 154
Query: 397 SGGQKSRVAFARMCMAAPNFLVLDEP 422
SGGQ V R M P +V+DEP
Sbjct: 155 SGGQMKLVEIGRALMTNPKMIVMDEP 180
>pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
pdb|2QI9|D Chain D, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
Length = 249
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 59/159 (37%), Gaps = 29/159 (18%)
Query: 306 ICIVGDNGAGKTTLLKIIMGIIS----------PTAGTRTVHRNLKFGYFSQHHVDQLDM 355
+ +VG NGAGK+TLL G S P L Y SQ
Sbjct: 29 LHLVGPNGAGKSTLLARXAGXTSGKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFAT 88
Query: 356 NLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLAL-----QFVGSLSGGQKSRVAFARMC 410
+ L Q + R V+G LAL + LSGG+ RV A +
Sbjct: 89 PVWHYLTLH-------QHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVV 141
Query: 411 M-------AAPNFLVLDEPTNHLDIETIEALGKAINKYT 442
+ A L+LDEP N LD+ AL K ++ +
Sbjct: 142 LQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSALS 180
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
Length = 250
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 75/182 (41%), Gaps = 36/182 (19%)
Query: 287 VPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFS 346
+ G+ IL V L ++G NGAGK+TL KI+ G P TV R
Sbjct: 13 IDGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAG--DPE---YTVERGEIL--LD 65
Query: 347 QHHVDQLDMNLRCVQLLEAAF------PGKP---------QEEYRRQLG--GFGVSGDLA 389
++ +L + R + L AF PG Q + R++G F A
Sbjct: 66 GENILELSPDERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKA 125
Query: 390 LQFVG------------SLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKA 437
L+ + SGG+K R ++ + P + VLDE + LDI+ ++ + +
Sbjct: 126 LELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARG 185
Query: 438 IN 439
+N
Sbjct: 186 VN 187
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 41/183 (22%), Positives = 75/183 (40%), Gaps = 46/183 (25%)
Query: 289 GKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQH 348
G IL N+ + R+ ++G G+GK+TLL + +++ T G +
Sbjct: 33 GNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEG--------------EI 77
Query: 349 HVDQLDMNLRCVQLLEAAFPGKPQE------EYRRQLGG---------FGVSGDLAL--- 390
+D + + ++ AF PQ+ +R+ L + V+ ++ L
Sbjct: 78 QIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLDPNAAHSDQEIWKVADEVGLRSV 137
Query: 391 --QFVGSL-----------SGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKA 437
QF G L S G K + AR ++ L+LDEP+ HLD T + + +
Sbjct: 138 IEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRT 197
Query: 438 INK 440
+ +
Sbjct: 198 LKQ 200
>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|D Chain D, Bacterial Abc Transporter Involved In B12 Uptake
Length = 249
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 57/154 (37%), Gaps = 29/154 (18%)
Query: 308 IVGDNGAGKTTLLKIIMGIIS----------PTAGTRTVHRNLKFGYFSQHHVDQLDMNL 357
+VG NGAGK+TLL G S P L Y SQ +
Sbjct: 31 LVGPNGAGKSTLLARXAGXTSGKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPV 90
Query: 358 RCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLAL-----QFVGSLSGGQKSRVAFARMCM- 411
L Q + R V+G LAL + LSGG+ RV A + +
Sbjct: 91 WHYLTLH-------QHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQ 143
Query: 412 ------AAPNFLVLDEPTNHLDIETIEALGKAIN 439
A L+LDEP N LD+ AL K ++
Sbjct: 144 ITPQANPAGQLLLLDEPXNSLDVAQQSALDKILS 177
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 60/149 (40%), Gaps = 20/149 (13%)
Query: 291 PILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHV 350
P L + + + +VG G GK++LL ++ + G + ++ Y Q
Sbjct: 19 PTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKGSV--AYVPQQAW 76
Query: 351 DQLDMNLRCVQLLEAAFPGKPQEE--YRRQLGGFGVSGDLALQFVG----------SLSG 398
Q D L E G EE YR + + DL + G +LSG
Sbjct: 77 IQND------SLRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSG 130
Query: 399 GQKSRVAFARMCMAAPNFLVLDEPTNHLD 427
GQK RV+ AR + + + D+P + +D
Sbjct: 131 GQKQRVSLARAVYSNADIYLFDDPLSAVD 159
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 36.6 bits (83), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 31/145 (21%), Positives = 65/145 (44%), Gaps = 10/145 (6%)
Query: 305 RICIVGDNGAGKTTLLKIIMGIISPTAG--------TRTVHRNLKFGYFSQHHVDQLDMN 356
++ I+G NG+GKTTLL+ I G++ P +G R + +++ + ++ +
Sbjct: 32 KVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKIRNYIRYS-TNLPEAYEIGVT 89
Query: 357 LRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNF 416
+ + L G ++ + L + ++ + + LS GQ V + + P
Sbjct: 90 VNDIVYLYEELKGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEI 149
Query: 417 LVLDEPTNHLDIETIEALGKAINKY 441
+ LDEP ++D + + I +Y
Sbjct: 150 VGLDEPFENVDAARRHVISRYIKEY 174
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 36.6 bits (83), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 60/160 (37%), Gaps = 32/160 (20%)
Query: 293 LTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN--------LKFGY 344
L V + I+G NG+GK+TL+ +I G + G R N + +
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEG-RVYFENKDITNKEPAELYH 81
Query: 345 FSQHHVDQLDMNLRCVQLLEAAFPGK-----------------PQEEYRRQLGGFGVSGD 387
+ Q L+ + +LE G+ P+EE + F +
Sbjct: 82 YGIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVE-KAFKILEF 140
Query: 388 LALQFV-----GSLSGGQKSRVAFARMCMAAPNFLVLDEP 422
L L + G LSGGQ V R M P +V+D+P
Sbjct: 141 LKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDQP 180
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 35.4 bits (80), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 24/45 (53%)
Query: 395 SLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAIN 439
SGG+K R +M + P +LDE + LDI+ ++ + +N
Sbjct: 145 GFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVN 189
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
Length = 267
Score = 35.0 bits (79), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 24/45 (53%)
Query: 395 SLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAIN 439
SGG+K R +M + P +LDE + LDI+ ++ + +N
Sbjct: 164 GFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVN 208
>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
pdb|4FI3|D Chain D, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
Length = 249
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 59/157 (37%), Gaps = 29/157 (18%)
Query: 308 IVGDNGAGKTTLLKIIMGIIS----------PTAGTRTVHRNLKFGYFSQHHVDQLDMNL 357
+VG NGAGK+TLL + G+ S P L Y SQ +
Sbjct: 31 LVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPV 90
Query: 358 RCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLAL-----QFVGSLSGGQKSRVAFARMCM- 411
L Q + R V+G LAL + LSGG+ RV A + +
Sbjct: 91 WHYLTLH-------QHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQ 143
Query: 412 ------AAPNFLVLDEPTNHLDIETIEALGKAINKYT 442
A L+LD+P LD+ AL K ++ +
Sbjct: 144 ITPQANPAGQLLLLDQPMCSLDVAQQSALDKILSALS 180
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 43/187 (22%), Positives = 68/187 (36%), Gaps = 36/187 (19%)
Query: 263 VLKFPDTELLSP--PILQ-LSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTL 319
++KF D P P +Q L + F PGK +VG NG+GK+T+
Sbjct: 16 LVKFQDVSFAYPNHPNVQVLQGLTFTLYPGK--------------VTALVGPNGSGKSTV 61
Query: 320 LKIIMGIISPTAGTRTVHRNLKFGY------------------FSQHHVDQLDMNLRCVQ 361
++ + PT G + Y F + + + L
Sbjct: 62 AALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTP 121
Query: 362 LLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGS-LSGGQKSRVAFARMCMAAPNFLVLD 420
+E + + GF D + G+ L+ GQ+ VA AR + P L+LD
Sbjct: 122 TMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLAVGQRQAVALARALIRKPRLLILD 181
Query: 421 EPTNHLD 427
T+ LD
Sbjct: 182 NATSALD 188
>pdb|1XX4|A Chain A, Crystal Structure Of Rat Mitochondrial 3,2-Enoyl-Coa
Length = 261
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 8/66 (12%)
Query: 100 LTQVFAELEAIEADKA-------PARASVILAGLGFTPEMQKRATKHFSGGWRKMAIIWL 152
LT+ LE +E DK+ R + AGL EM R H++ W+ + +WL
Sbjct: 34 LTEFVISLEKLENDKSIRGVILTSERPGIFSAGLDLM-EMYGRNPAHYAEYWKAVQELWL 92
Query: 153 ENYLQN 158
YL N
Sbjct: 93 RLYLSN 98
>pdb|4DCN|A Chain A, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In
Complex With Arl1
pdb|4DCN|B Chain B, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In
Complex With Arl1
Length = 166
Score = 32.0 bits (71), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 7/67 (10%)
Query: 300 ATLESRICIVGDNGAGKTTLL-KIIMGIIS---PTAG--TRTV-HRNLKFGYFSQHHVDQ 352
T E RI I+G +GAGKTT+L ++ +G + PT G TV ++NLKF + +
Sbjct: 1 GTREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLTS 60
Query: 353 LDMNLRC 359
+ RC
Sbjct: 61 IRPYWRC 67
>pdb|1UPT|A Chain A, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
pdb|1UPT|C Chain C, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
pdb|1UPT|E Chain E, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
pdb|1UPT|G Chain G, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
Length = 171
Score = 32.0 bits (71), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 37/66 (56%), Gaps = 7/66 (10%)
Query: 301 TLESRICIVGDNGAGKTTLL-KIIMGIIS---PTAG--TRTV-HRNLKFGYFSQHHVDQL 353
T E RI I+G +GAGKTT+L ++ +G + PT G TV ++NLKF + + +
Sbjct: 5 TREXRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLTSI 64
Query: 354 DMNLRC 359
RC
Sbjct: 65 RPYWRC 70
>pdb|1NHG|A Chain A, Crystal Structure Analysis Of Plasmodium Falciparum Enoyl-
Acyl-Carrier-Protein Reductase With Triclosan
pdb|1NHG|B Chain B, Crystal Structure Analysis Of Plasmodium Falciparum Enoyl-
Acyl-Carrier-Protein Reductase With Triclosan
pdb|1NHW|A Chain A, Crystal Structure Analysis Of Plasmodium Falciparum Enoyl-
Acyl-carrier-protein Reductase
pdb|1NHW|B Chain B, Crystal Structure Analysis Of Plasmodium Falciparum Enoyl-
Acyl-carrier-protein Reductase
pdb|1NNU|A Chain A, Crystal Structure Analysis Of Plasmodium Falciparum Enoyl-
Acyl-Carrier-Protein Reductase With Triclosan Analog
pdb|1NNU|B Chain B, Crystal Structure Analysis Of Plasmodium Falciparum Enoyl-
Acyl-Carrier-Protein Reductase With Triclosan Analog
pdb|2NQ8|A Chain A, Malarial Enoyl Acyl Acp Reductase Bound With Inh-Nad
Adduct
pdb|2NQ8|B Chain B, Malarial Enoyl Acyl Acp Reductase Bound With Inh-Nad
Adduct
Length = 229
Score = 31.6 bits (70), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 31/137 (22%), Positives = 57/137 (41%), Gaps = 9/137 (6%)
Query: 125 GLGFTPEMQKRATKHFSGGWRKMAIIWLENYLQNWPTTLLVVSHDR--HFLDSVPTDIFH 182
G G E+ KR K G W + I+++NY +++ D+ + LD +P D
Sbjct: 16 GWGIAKELSKRNVKIIFGIWPPVYNIFMKNYKNGKFDNDMIIDKDKKMNILDMLPFDASF 75
Query: 183 LHSQRIDTYRGNYEAFDKIKTEKLKNQQREIEAQRMHREHVQKFIDTFRYNANRASSVQS 242
+ ID N + ++ L+N E A +H+++ + I+ ++ A VQ
Sbjct: 76 DTANDIDEETKNNKRYN-----MLQNYTIEDVANLIHQKYGK--INMLVHSLANAKEVQK 128
Query: 243 KIKQLERLPELKPIEKE 259
+ R L + K
Sbjct: 129 DLLNTSRKGYLDALSKS 145
>pdb|3R6N|A Chain A, Crystal Structure Of A Rigid Four Spectrin Repeat Fragment
Of The Human Desmoplakin Plakin Domain
pdb|3R6N|B Chain B, Crystal Structure Of A Rigid Four Spectrin Repeat Fragment
Of The Human Desmoplakin Plakin Domain
Length = 450
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 48/115 (41%), Gaps = 19/115 (16%)
Query: 250 LPELKPIEKEVEVVLKFPDT--ELL--SPPILQLSEVNFEYVPGKPILTNVCLGATLESR 305
L ++K +EKE E +L++ L+ S I+QL N +Y KPI+ + +
Sbjct: 238 LEQIKELEKEREKILEYKRQVQNLVNKSKKIVQLKPRNPDYRSNKPIILRALCDYKQDQK 297
Query: 306 I------CIVGDN---------GAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYF 345
I CI+ DN G G +L +G+I P V + K +
Sbjct: 298 IVHKGDECILKDNNERSKWYVTGPGGVDMLVPSVGLIIPPPNPLAVDLSCKIEQY 352
>pdb|3AM5|A Chain A, K316a Mutant Of Enoyl-Acp Reductase From Plasmodium
Falciparum (Pfenr) In Complex With Triclosan
pdb|3AM5|B Chain B, K316a Mutant Of Enoyl-Acp Reductase From Plasmodium
Falciparum (Pfenr) In Complex With Triclosan
Length = 329
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/136 (22%), Positives = 57/136 (41%), Gaps = 9/136 (6%)
Query: 125 GLGFTPEMQKRATKHFSGGWRKMAIIWLENYLQNWPTTLLVVSHDR--HFLDSVPTDIFH 182
G G E+ KR K G W + I+++NY +++ D+ + LD +P D
Sbjct: 17 GWGIAKELSKRNVKIIFGIWPPVYNIFMKNYKNGKFDNDMIIDKDKKMNILDMLPFDASF 76
Query: 183 LHSQRIDTYRGNYEAFDKIKTEKLKNQQREIEAQRMHREHVQKFIDTFRYNANRASSVQS 242
+ ID N + ++ L+N E A +H+++ + I+ ++ A VQ
Sbjct: 77 DTANDIDEETKNNKRYN-----MLQNYTIEDVANLIHQKYGK--INMLVHSLANAKEVQK 129
Query: 243 KIKQLERLPELKPIEK 258
+ R L + K
Sbjct: 130 DLLNTSRKGYLDALSK 145
>pdb|2OL4|A Chain A, Crystal Structure Of Plasmodium Falciparum Enoyl Acp
Reductase With Triclosan Reductase
pdb|2OL4|B Chain B, Crystal Structure Of Plasmodium Falciparum Enoyl Acp
Reductase With Triclosan Reductase
pdb|2OOS|A Chain A, Crystal Structure Of Plasmodium Falciparum Enoyl Acp
Reductase With Triclosan Reductase
pdb|2OOS|B Chain B, Crystal Structure Of Plasmodium Falciparum Enoyl Acp
Reductase With Triclosan Reductase
pdb|2OP0|A Chain A, Crystal Structure Of Plasmodium Falciparum Enoyl Acp
Reductase With Triclosan Reductase
pdb|2OP0|B Chain B, Crystal Structure Of Plasmodium Falciparum Enoyl Acp
Reductase With Triclosan Reductase
pdb|2OP1|A Chain A, Crystal Structure Of Plasmodium Falciparum Enoyl Acp
Reductase With Triclosan Reductase
pdb|2OP1|B Chain B, Crystal Structure Of Plasmodium Falciparum Enoyl Acp
Reductase With Triclosan Reductase
Length = 338
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/136 (22%), Positives = 57/136 (41%), Gaps = 9/136 (6%)
Query: 125 GLGFTPEMQKRATKHFSGGWRKMAIIWLENYLQNWPTTLLVVSHDR--HFLDSVPTDIFH 182
G G E+ KR K G W + I+++NY +++ D+ + LD +P D
Sbjct: 25 GWGIAKELSKRNVKIIFGIWPPVYNIFMKNYKNGKFDNDMIIDKDKKMNILDMLPFDASF 84
Query: 183 LHSQRIDTYRGNYEAFDKIKTEKLKNQQREIEAQRMHREHVQKFIDTFRYNANRASSVQS 242
+ ID N + ++ L+N E A +H+++ + I+ ++ A VQ
Sbjct: 85 DTANDIDEETKNNKRYN-----MLQNYTIEDVANLIHQKYGK--INMLVHSLANAKEVQK 137
Query: 243 KIKQLERLPELKPIEK 258
+ R L + K
Sbjct: 138 DLLNTSRKGYLDALSK 153
>pdb|3AM3|A Chain A, A372m Mutant Of Enoyl-Acp Reductase From Plasmodium
Falciparum (Pfenr) In Complex With Triclosan
pdb|3AM3|B Chain B, A372m Mutant Of Enoyl-Acp Reductase From Plasmodium
Falciparum (Pfenr) In Complex With Triclosan
pdb|3AM4|A Chain A, A372m Mutant Of Enoyl-Acp Reductase From Plasmodium
Falciparum (Pfenr) In Complex With Triclosan Variant T1
pdb|3AM4|B Chain B, A372m Mutant Of Enoyl-Acp Reductase From Plasmodium
Falciparum (Pfenr) In Complex With Triclosan Variant T1
Length = 329
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/136 (22%), Positives = 57/136 (41%), Gaps = 9/136 (6%)
Query: 125 GLGFTPEMQKRATKHFSGGWRKMAIIWLENYLQNWPTTLLVVSHDR--HFLDSVPTDIFH 182
G G E+ KR K G W + I+++NY +++ D+ + LD +P D
Sbjct: 17 GWGIAKELSKRNVKIIFGIWPPVYNIFMKNYKNGKFDNDMIIDKDKKMNILDMLPFDASF 76
Query: 183 LHSQRIDTYRGNYEAFDKIKTEKLKNQQREIEAQRMHREHVQKFIDTFRYNANRASSVQS 242
+ ID N + ++ L+N E A +H+++ + I+ ++ A VQ
Sbjct: 77 DTANDIDEETKNNKRYN-----MLQNYTIEDVANLIHQKYGK--INMLVHSLANAKEVQK 129
Query: 243 KIKQLERLPELKPIEK 258
+ R L + K
Sbjct: 130 DLLNTSRKGYLDALSK 145
>pdb|1UH5|A Chain A, Crystal Structure Of Enoyl-Acp Reductase With Triclosan At
2.2angstroms
pdb|1UH5|B Chain B, Crystal Structure Of Enoyl-Acp Reductase With Triclosan At
2.2angstroms
pdb|1V35|A Chain A, Crystal Structure Of Eoyl-Acp Reductase With Nadh
pdb|1V35|B Chain B, Crystal Structure Of Eoyl-Acp Reductase With Nadh
pdb|3LSY|A Chain A, Enoyl-Acp Reductase From Plasmodium Falciparum (Pfenr) In
Co Triclosan Variant T0
pdb|3LSY|B Chain B, Enoyl-Acp Reductase From Plasmodium Falciparum (Pfenr) In
Co Triclosan Variant T0
pdb|3LT0|A Chain A, Enoyl-Acp Reductase From Plasmodium Falciparum (Pfenr) In
Complex With Triclosan Variant T1
pdb|3LT0|B Chain B, Enoyl-Acp Reductase From Plasmodium Falciparum (Pfenr) In
Complex With Triclosan Variant T1
pdb|3LT1|A Chain A, Enoyl-Acp Reductase From Plasmodium Falciparum (Pfenr) In
Co Triclosan Variant T2
pdb|3LT1|B Chain B, Enoyl-Acp Reductase From Plasmodium Falciparum (Pfenr) In
Co Triclosan Variant T2
pdb|3LT2|A Chain A, Enoyl-Acp Reductase From Plasmodium Falciparum (Pfenr) In
Co Triclosan Variant T3
pdb|3LT2|B Chain B, Enoyl-Acp Reductase From Plasmodium Falciparum (Pfenr) In
Co Triclosan Variant T3
pdb|3LT4|A Chain A, Enoyl-Acp Reductase From Plasmodium Falciparum (Pfenr) In
Co Triclosan Variant Pb4
pdb|3LT4|B Chain B, Enoyl-Acp Reductase From Plasmodium Falciparum (Pfenr) In
Co Triclosan Variant Pb4
Length = 329
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 31/136 (22%), Positives = 57/136 (41%), Gaps = 9/136 (6%)
Query: 125 GLGFTPEMQKRATKHFSGGWRKMAIIWLENYLQNWPTTLLVVSHDR--HFLDSVPTDIFH 182
G G E+ KR K G W + I+++NY +++ D+ + LD +P D
Sbjct: 17 GWGIAKELSKRNVKIIFGIWPPVYNIFMKNYKNGKFDNDMIIDKDKKMNILDMLPFDASF 76
Query: 183 LHSQRIDTYRGNYEAFDKIKTEKLKNQQREIEAQRMHREHVQKFIDTFRYNANRASSVQS 242
+ ID N + ++ L+N E A +H+++ + I+ ++ A VQ
Sbjct: 77 DTANDIDEETKNNKRYN-----MLQNYTIEDVANLIHQKYGK--INMLVHSLANAKEVQK 129
Query: 243 KIKQLERLPELKPIEK 258
+ R L + K
Sbjct: 130 DLLNTSRKGYLDALSK 145
>pdb|1VRW|A Chain A, Crystal Structure Analysis Of Plasmodium Falciparum Enoyl-
Acyl-Carrier-Protein Reductase With Nadh
pdb|1VRW|B Chain B, Crystal Structure Analysis Of Plasmodium Falciparum Enoyl-
Acyl-Carrier-Protein Reductase With Nadh
pdb|1ZSN|A Chain A, Synthesis, Biological Activity, And X-Ray Crystal
Structural Analysis Of Diaryl Ether Inhibitors Of
Malarial Enoyl Acp Reductase. Part 1:4'-Substituted
Triclosan Derivatives
pdb|1ZSN|B Chain B, Synthesis, Biological Activity, And X-Ray Crystal
Structural Analysis Of Diaryl Ether Inhibitors Of
Malarial Enoyl Acp Reductase. Part 1:4'-Substituted
Triclosan Derivatives
pdb|1ZW1|A Chain A, Synthesis, Biological Activity, And X-ray Crystal
Structural Analysis Of Diaryl Ether Inhibitors Of
Malarial Enoyl Acp Reductase. Part 1:4'-substituted
Triclosan Derivatives
pdb|1ZW1|B Chain B, Synthesis, Biological Activity, And X-ray Crystal
Structural Analysis Of Diaryl Ether Inhibitors Of
Malarial Enoyl Acp Reductase. Part 1:4'-substituted
Triclosan Derivatives
pdb|1ZXB|A Chain A, Synthesis, Biological Activity, And X-Ray Crystal
Structural Analysis Of Diaryl Ether Inhibitors Of
Malarial Enoyl Acp Reductase. Part 1:4'-Substituted
Triclosan Derivatives
pdb|1ZXB|B Chain B, Synthesis, Biological Activity, And X-Ray Crystal
Structural Analysis Of Diaryl Ether Inhibitors Of
Malarial Enoyl Acp Reductase. Part 1:4'-Substituted
Triclosan Derivatives
pdb|1ZXL|A Chain A, Synthesis, Biological Activity, And X-Ray Crystal
Structural Analysis Of Diaryl Ether Inhibitors Of
Malarial Enoyl Acp Reductase. Part 1:4'-Substituted
Triclosan Derivatives
pdb|1ZXL|B Chain B, Synthesis, Biological Activity, And X-Ray Crystal
Structural Analysis Of Diaryl Ether Inhibitors Of
Malarial Enoyl Acp Reductase. Part 1:4'-Substituted
Triclosan Derivatives
Length = 336
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 31/136 (22%), Positives = 57/136 (41%), Gaps = 9/136 (6%)
Query: 125 GLGFTPEMQKRATKHFSGGWRKMAIIWLENYLQNWPTTLLVVSHDR--HFLDSVPTDIFH 182
G G E+ KR K G W + I+++NY +++ D+ + LD +P D
Sbjct: 16 GWGIAKELSKRNVKIIFGIWPPVYNIFMKNYKNGKFDNDMIIDKDKKMNILDMLPFDASF 75
Query: 183 LHSQRIDTYRGNYEAFDKIKTEKLKNQQREIEAQRMHREHVQKFIDTFRYNANRASSVQS 242
+ ID N + ++ L+N E A +H+++ + I+ ++ A VQ
Sbjct: 76 DTANDIDEETKNNKRYN-----MLQNYTIEDVANLIHQKYGK--INMLVHSLANAKEVQK 128
Query: 243 KIKQLERLPELKPIEK 258
+ R L + K
Sbjct: 129 DLLNTSRKGYLDALSK 144
>pdb|2FOI|A Chain A, Synthesis, Biological Activity, And X-Ray Crystal
Structural Analysis Of Diaryl Ether Inhibitors Of
Malarial Enoyl Acp Reductase.
pdb|2FOI|B Chain B, Synthesis, Biological Activity, And X-Ray Crystal
Structural Analysis Of Diaryl Ether Inhibitors Of
Malarial Enoyl Acp Reductase
Length = 269
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 31/136 (22%), Positives = 57/136 (41%), Gaps = 9/136 (6%)
Query: 125 GLGFTPEMQKRATKHFSGGWRKMAIIWLENYLQNWPTTLLVVSHDR--HFLDSVPTDIFH 182
G G E+ KR K G W + I+++NY +++ D+ + LD +P D
Sbjct: 16 GWGIAKELSKRNVKIIFGIWPPVYNIFMKNYKNGKFDNDMIIDKDKKMNILDMLPFDASF 75
Query: 183 LHSQRIDTYRGNYEAFDKIKTEKLKNQQREIEAQRMHREHVQKFIDTFRYNANRASSVQS 242
+ ID N + ++ L+N E A +H+++ + I+ ++ A VQ
Sbjct: 76 DTANDIDEETKNNKRYN-----MLQNYTIEDVANLIHQKYGK--INMLVHSLANAKEVQK 128
Query: 243 KIKQLERLPELKPIEK 258
+ R L + K
Sbjct: 129 DLLNTSRKGYLDALSK 144
>pdb|2O2Y|A Chain A, The Crystal Structure Of P. Falciparum Enoyl Acyl Carrier
Protein Reductase
pdb|2O2Y|B Chain B, The Crystal Structure Of P. Falciparum Enoyl Acyl Carrier
Protein Reductase
pdb|2O2Y|C Chain C, The Crystal Structure Of P. Falciparum Enoyl Acyl Carrier
Protein Reductase
pdb|2O2Y|D Chain D, The Crystal Structure Of P. Falciparum Enoyl Acyl Carrier
Protein Reductase
Length = 349
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 31/136 (22%), Positives = 57/136 (41%), Gaps = 9/136 (6%)
Query: 125 GLGFTPEMQKRATKHFSGGWRKMAIIWLENYLQNWPTTLLVVSHDR--HFLDSVPTDIFH 182
G G E+ KR K G W + I+++NY +++ D+ + LD +P D
Sbjct: 29 GWGIAKELSKRNVKIIFGIWPPVYNIFMKNYKNGKFDNDMIIDKDKKMNILDMLPFDASF 88
Query: 183 LHSQRIDTYRGNYEAFDKIKTEKLKNQQREIEAQRMHREHVQKFIDTFRYNANRASSVQS 242
+ ID N + ++ L+N E A +H+++ + I+ ++ A VQ
Sbjct: 89 DTANDIDEETKNNKRYN-----MLQNYTIEDVANLIHQKYGK--INMLVHSLANAKEVQK 141
Query: 243 KIKQLERLPELKPIEK 258
+ R L + K
Sbjct: 142 DLLNTSRKGYLDALSK 157
>pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|B Chain B, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|C Chain C, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|D Chain D, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
Length = 165
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 7/64 (10%)
Query: 303 ESRICIVGDNGAGKTTLL-KIIMGIIS---PTAG--TRTV-HRNLKFGYFSQHHVDQLDM 355
E RI I+G +GAGKTT+L ++ +G + PT G TV ++NLKF + +
Sbjct: 2 EMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRP 61
Query: 356 NLRC 359
RC
Sbjct: 62 YWRC 65
>pdb|2GZA|A Chain A, Crystal Structure Of The Virb11 Atpase From The Brucella
Suis Type Iv Secretion System In Complex With Sulphate
pdb|2GZA|B Chain B, Crystal Structure Of The Virb11 Atpase From The Brucella
Suis Type Iv Secretion System In Complex With Sulphate
pdb|2GZA|C Chain C, Crystal Structure Of The Virb11 Atpase From The Brucella
Suis Type Iv Secretion System In Complex With Sulphate
Length = 361
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 302 LESRICIVGDNGAGKTTLLKIIM 324
LE I + G+ G+GKTTL+K +M
Sbjct: 174 LERVIVVAGETGSGKTTLMKALM 196
>pdb|1UHH|A Chain A, Crystal Structure Of Cp-Aequorin
pdb|1UHH|B Chain B, Crystal Structure Of Cp-Aequorin
pdb|1UHJ|A Chain A, Crystal Structure Of Br-Aequorin
pdb|1UHJ|B Chain B, Crystal Structure Of Br-Aequorin
Length = 191
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 21/77 (27%)
Query: 110 IEADKAPARAS-VILAGLGFTPEMQKR---ATKHFSGG-----------------WRKMA 148
I D+ +AS +++ LG TPE KR A + F GG W+K+A
Sbjct: 33 ISLDEXVYKASDIVINNLGATPEQAKRHKDAVEAFFGGAGXKYGVETDWPAYIEGWKKLA 92
Query: 149 IIWLENYLQNWPTTLLV 165
LE Y +N PT + +
Sbjct: 93 TDELEKYAKNEPTLIRI 109
>pdb|3R9W|A Chain A, Crystal Structure Of Era In Complex With Mggdpnp And
Nucleotides 1506- 1542 Of 16s Ribosomal Rna
pdb|3R9X|A Chain A, Crystal Structure Of Era In Complex With Mggdpnp,
Nucleotides 1506- 1542 Of 16s Ribosomal Rna, And Ksga
Length = 307
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 20/32 (62%), Gaps = 4/32 (12%)
Query: 306 ICIVGDNGAGKTTLLKIIMG----IISPTAGT 333
+ IVG GK+TLL ++G IISP AGT
Sbjct: 12 VAIVGKPNVGKSTLLNNLLGTKVSIISPKAGT 43
>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From
Pyrococcus Furiosus Pfu-867808-001
Length = 214
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 277 LQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAG 332
L++ +++ Y KP+L + + + + G NG GKTTLLK I + P G
Sbjct: 11 LEIRDLSVGY--DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKG 64
>pdb|3IEV|A Chain A, Crystal Structure Of Era In Complex With Mggnp And The 3'
End Of 16s Rrna
Length = 308
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 20/32 (62%), Gaps = 4/32 (12%)
Query: 306 ICIVGDNGAGKTTLLKIIMG----IISPTAGT 333
+ IVG GK+TLL ++G IISP AGT
Sbjct: 13 VAIVGKPNVGKSTLLNNLLGTKVSIISPKAGT 44
>pdb|1EJ3|A Chain A, Crystal Structure Of Aequorin
pdb|1EJ3|B Chain B, Crystal Structure Of Aequorin
pdb|1UHI|A Chain A, Crystal Structure Of I-aequorin
pdb|1UHI|B Chain B, Crystal Structure Of I-aequorin
pdb|1UHK|A Chain A, Crystal Structure Of N-Aequorin
pdb|1UHK|B Chain B, Crystal Structure Of N-Aequorin
Length = 191
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 21/77 (27%)
Query: 110 IEADKAPARAS-VILAGLGFTPEMQKR---ATKHFSGG-----------------WRKMA 148
I D+ +AS +++ LG TPE KR A + F GG W+K+A
Sbjct: 33 ISLDEMVYKASDIVINNLGATPEQAKRHKDAVEAFFGGAGMKYGVETDWPAYIEGWKKLA 92
Query: 149 IIWLENYLQNWPTTLLV 165
LE Y +N PT + +
Sbjct: 93 TDELEKYAKNEPTLIRI 109
>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
pdb|4DJT|B Chain B, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
Length = 218
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 302 LESRICIVGDNGAGKTTLLKIIM 324
L +IC++GD G GKTT + ++
Sbjct: 10 LTYKICLIGDGGVGKTTYINRVL 32
>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein
Rhod
Length = 214
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 305 RICIVGDNGAGKTTLLKIIMGIISPTAGTRTV 336
++ +VGD G GKT+LL + P + T TV
Sbjct: 36 KVVLVGDGGCGKTSLLMVFADGAFPESYTPTV 67
>pdb|2ODV|A Chain A, Crystal Structure Of A Fragment Of The Plakin Domain Of
Plectin, Cys To Ala Mutant
Length = 235
Score = 28.5 bits (62), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 5/95 (5%)
Query: 31 LEGGMVSGQLRIPSHISVLHVEQEVVGDDTPAI---DSVLECDTKRQNLLNREKTITQAI 87
LEG + +GQL++P L VE+E G AI + L + +R L R T Q +
Sbjct: 78 LEGAVQAGQLKVPPGYHPLDVEKE-WGKLHVAILEREKQLRSEFERLEALQRIVTKLQ-M 135
Query: 88 NNGTADANMSTELTQVFAELEAIEADKAPARASVI 122
G A+ ++ + +++ + A K P RA +
Sbjct: 136 EAGLAEEQLNQADALLQSDVRLLAAGKVPQRAGEV 170
>pdb|3ZQJ|A Chain A, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|B Chain B, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|C Chain C, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|D Chain D, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|E Chain E, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|F Chain F, Mycobacterium Tuberculosis Uvra
Length = 993
Score = 28.1 bits (61), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 42/111 (37%), Gaps = 5/111 (4%)
Query: 332 GTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQ 391
G R L+ Y + + LDM++ + E P Y R L G+ Q
Sbjct: 802 GARYNRETLEVHYKGKTVSEVLDMSIE--EAAEFFEPIAGVHRYLRTLVDVGLGYVRLGQ 859
Query: 392 FVGSLSGGQKSRVAFARMCM---AAPNFLVLDEPTNHLDIETIEALGKAIN 439
+LSGG+ RV A +LDEPT L + I L IN
Sbjct: 860 PAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVIN 910
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,698,827
Number of Sequences: 62578
Number of extensions: 525116
Number of successful extensions: 2399
Number of sequences better than 100.0: 123
Number of HSP's better than 100.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 2181
Number of HSP's gapped (non-prelim): 193
length of query: 443
length of database: 14,973,337
effective HSP length: 102
effective length of query: 341
effective length of database: 8,590,381
effective search space: 2929319921
effective search space used: 2929319921
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)