Query psy208
Match_columns 443
No_of_seqs 404 out of 3293
Neff 7.5
Searched_HMMs 46136
Date Fri Aug 16 23:47:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy208.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/208hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0488 Uup ATPase components 100.0 1.6E-85 3.4E-90 688.5 42.3 427 8-442 5-486 (530)
2 PRK10636 putative ABC transpor 100.0 8.2E-70 1.8E-74 588.7 45.4 425 8-441 3-476 (638)
3 KOG0927|consensus 100.0 1.3E-68 2.9E-73 540.9 27.5 430 8-442 77-556 (614)
4 PLN03073 ABC transporter F fam 100.0 5.9E-66 1.3E-70 561.8 46.3 434 8-441 179-673 (718)
5 KOG0066|consensus 100.0 6.1E-68 1.3E-72 522.7 26.7 416 24-442 291-751 (807)
6 PRK11147 ABC transporter ATPas 100.0 1.3E-65 2.8E-70 556.5 46.3 427 8-442 5-487 (635)
7 KOG0062|consensus 100.0 7.9E-67 1.7E-71 525.5 24.3 322 121-442 180-529 (582)
8 PRK11819 putative ABC transpor 100.0 3.7E-61 8.1E-66 514.7 47.1 435 1-441 1-491 (556)
9 PRK15064 ABC transporter ATP-b 100.0 9E-59 1.9E-63 494.0 49.8 429 9-441 4-484 (530)
10 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 2.1E-58 4.6E-63 493.2 50.2 428 8-441 6-489 (552)
11 TIGR03269 met_CoM_red_A2 methy 100.0 4.9E-48 1.1E-52 410.8 29.1 269 114-441 144-473 (520)
12 PRK10261 glutathione transport 100.0 1.7E-47 3.7E-52 414.0 30.6 305 115-441 142-509 (623)
13 COG1123 ATPase components of v 100.0 7.7E-47 1.7E-51 390.5 31.7 290 112-442 126-476 (539)
14 PRK15134 microcin C ABC transp 100.0 1.6E-46 3.4E-51 399.9 33.2 278 115-441 130-471 (529)
15 PRK09700 D-allose transporter 100.0 4.3E-46 9.3E-51 395.0 30.2 357 7-441 6-455 (510)
16 PRK15439 autoinducer 2 ABC tra 100.0 6.9E-46 1.5E-50 393.3 31.3 347 8-441 13-449 (510)
17 PRK10938 putative molybdenum t 100.0 8.4E-46 1.8E-50 391.0 30.1 284 115-441 112-447 (490)
18 TIGR02633 xylG D-xylose ABC tr 100.0 7.1E-46 1.5E-50 392.5 27.5 276 116-441 118-449 (500)
19 PRK13549 xylose transporter AT 100.0 6.1E-46 1.3E-50 393.4 26.8 274 117-441 122-451 (506)
20 PRK13409 putative ATPase RIL; 100.0 8.2E-45 1.8E-49 389.2 32.6 280 115-441 189-499 (590)
21 PRK11288 araG L-arabinose tran 100.0 2.1E-45 4.5E-50 388.9 26.7 271 116-441 118-442 (501)
22 PRK10762 D-ribose transporter 100.0 4.8E-45 1E-49 386.2 27.8 269 116-441 119-441 (501)
23 PRK10982 galactose/methyl gala 100.0 3.5E-44 7.6E-49 378.7 30.4 271 117-441 113-437 (491)
24 COG4172 ABC-type uncharacteriz 100.0 9.8E-42 2.1E-46 335.4 23.5 294 100-442 116-473 (534)
25 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 9E-41 2E-45 317.7 18.4 166 275-442 3-186 (254)
26 COG1126 GlnQ ABC-type polar am 100.0 4.7E-41 1E-45 307.9 14.8 163 275-441 1-182 (240)
27 COG1116 TauB ABC-type nitrate/ 100.0 1.7E-38 3.7E-43 298.7 17.7 162 275-440 2-175 (248)
28 COG1120 FepC ABC-type cobalami 100.0 1.2E-38 2.6E-43 304.6 16.3 163 276-442 2-185 (258)
29 COG1124 DppF ABC-type dipeptid 100.0 3E-38 6.5E-43 294.7 17.4 167 275-441 2-187 (252)
30 COG3638 ABC-type phosphate/pho 100.0 1.5E-37 3.3E-42 288.2 15.4 164 275-441 2-193 (258)
31 COG1136 SalX ABC-type antimicr 100.0 4.3E-37 9.3E-42 288.5 17.7 164 276-441 1-188 (226)
32 COG2884 FtsE Predicted ATPase 100.0 2.6E-37 5.6E-42 277.6 12.6 164 276-442 1-184 (223)
33 TIGR00960 3a0501s02 Type II (G 100.0 1.6E-36 3.5E-41 286.8 17.5 163 276-441 1-184 (216)
34 COG1135 AbcC ABC-type metal io 100.0 5.8E-37 1.3E-41 294.2 14.5 163 276-441 1-187 (339)
35 COG1127 Ttg2A ABC-type transpo 100.0 1.8E-36 3.9E-41 281.8 15.4 165 274-441 6-191 (263)
36 COG1131 CcmA ABC-type multidru 100.0 3.3E-36 7.3E-41 297.3 18.1 165 275-442 3-183 (293)
37 cd03226 ABC_cobalt_CbiO_domain 100.0 4E-36 8.7E-41 281.9 17.7 162 278-441 1-172 (205)
38 COG1122 CbiO ABC-type cobalt t 100.0 2.5E-36 5.3E-41 287.7 16.1 166 275-442 2-185 (235)
39 PRK11247 ssuB aliphatic sulfon 100.0 7.4E-36 1.6E-40 289.8 19.7 164 274-441 10-179 (257)
40 cd03235 ABC_Metallic_Cations A 100.0 2.5E-36 5.4E-41 284.9 15.4 163 278-442 1-179 (213)
41 TIGR02673 FtsE cell division A 100.0 4.6E-36 9.9E-41 283.2 16.9 163 276-441 1-183 (214)
42 COG0488 Uup ATPase components 100.0 3.3E-36 7.1E-41 316.3 17.5 163 275-442 2-200 (530)
43 cd03259 ABC_Carb_Solutes_like 100.0 3.6E-36 7.8E-41 283.8 16.0 161 277-441 1-176 (213)
44 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 8.2E-36 1.8E-40 282.2 18.0 162 277-441 1-186 (218)
45 cd03261 ABC_Org_Solvent_Resist 100.0 9.3E-36 2E-40 285.2 18.2 161 277-441 1-182 (235)
46 PRK11629 lolD lipoprotein tran 100.0 1.2E-35 2.5E-40 284.3 18.3 165 274-441 3-191 (233)
47 COG1125 OpuBA ABC-type proline 100.0 2.1E-36 4.5E-41 282.8 12.3 163 276-441 1-181 (309)
48 cd03293 ABC_NrtD_SsuB_transpor 100.0 1.1E-35 2.4E-40 282.0 16.9 162 277-441 1-177 (220)
49 PRK09544 znuC high-affinity zi 100.0 2.6E-35 5.7E-40 285.1 19.6 164 275-441 3-166 (251)
50 cd03265 ABC_DrrA DrrA is the A 100.0 1.2E-35 2.7E-40 281.6 16.8 161 277-441 1-177 (220)
51 TIGR02211 LolD_lipo_ex lipopro 100.0 1.7E-35 3.6E-40 280.7 17.4 163 276-441 1-187 (221)
52 cd03231 ABC_CcmA_heme_exporter 100.0 3.8E-35 8.3E-40 274.7 18.8 161 277-441 1-171 (201)
53 PRK13538 cytochrome c biogenes 100.0 2.7E-35 5.8E-40 276.3 17.7 162 276-441 1-175 (204)
54 cd03268 ABC_BcrA_bacitracin_re 100.0 3.7E-35 8E-40 275.9 18.6 161 277-441 1-172 (208)
55 COG3839 MalK ABC-type sugar tr 100.0 1.7E-35 3.8E-40 293.0 17.1 163 275-441 2-179 (338)
56 PRK13537 nodulation ABC transp 100.0 4.9E-35 1.1E-39 291.0 20.3 164 274-441 5-184 (306)
57 cd03301 ABC_MalK_N The N-termi 100.0 2.5E-35 5.5E-40 277.9 17.1 161 277-441 1-176 (213)
58 cd03257 ABC_NikE_OppD_transpor 100.0 4.6E-35 1E-39 278.7 18.9 166 276-441 1-191 (228)
59 PRK10908 cell division protein 100.0 2.8E-35 6.2E-40 279.5 17.3 163 276-441 1-183 (222)
60 cd03269 ABC_putative_ATPase Th 100.0 2.4E-35 5.2E-40 277.6 16.5 161 277-441 1-174 (210)
61 cd03292 ABC_FtsE_transporter F 100.0 2.7E-35 5.8E-40 277.8 16.8 162 277-441 1-182 (214)
62 PRK10584 putative ABC transpor 100.0 3.5E-35 7.6E-40 279.9 17.5 164 275-441 5-192 (228)
63 cd03266 ABC_NatA_sodium_export 100.0 3E-35 6.6E-40 278.3 16.9 162 276-441 1-182 (218)
64 cd03296 ABC_CysA_sulfate_impor 100.0 5.2E-35 1.1E-39 280.9 18.7 162 276-441 2-182 (239)
65 PRK11248 tauB taurine transpor 100.0 3.6E-35 7.8E-40 284.8 17.8 162 276-441 1-174 (255)
66 TIGR02315 ABC_phnC phosphonate 100.0 2.7E-35 5.8E-40 283.2 16.7 163 276-441 1-191 (243)
67 COG3842 PotA ABC-type spermidi 100.0 1.2E-35 2.6E-40 295.6 14.4 164 274-441 3-182 (352)
68 cd03263 ABC_subfamily_A The AB 100.0 3.9E-35 8.5E-40 278.0 17.0 163 277-442 1-180 (220)
69 PRK11650 ugpC glycerol-3-phosp 100.0 3.7E-35 8.1E-40 297.2 18.0 163 276-441 3-180 (356)
70 TIGR01288 nodI ATP-binding ABC 100.0 7.4E-35 1.6E-39 289.5 19.8 163 275-441 3-181 (303)
71 PRK13536 nodulation factor exp 100.0 8.6E-35 1.9E-39 292.8 20.5 165 273-441 38-218 (340)
72 cd03225 ABC_cobalt_CbiO_domain 100.0 2.2E-35 4.8E-40 277.9 15.2 162 278-441 1-180 (211)
73 PRK11701 phnK phosphonate C-P 100.0 7.3E-35 1.6E-39 283.0 19.2 166 275-441 5-197 (258)
74 TIGR02314 ABC_MetN D-methionin 100.0 4.5E-35 9.7E-40 294.7 18.2 163 276-441 1-186 (343)
75 PRK11831 putative ABC transpor 100.0 7.3E-35 1.6E-39 284.8 18.6 164 274-441 5-189 (269)
76 TIGR01189 ccmA heme ABC export 100.0 1.1E-34 2.4E-39 270.8 18.8 161 277-441 1-173 (198)
77 TIGR02323 CP_lyasePhnK phospho 100.0 8E-35 1.7E-39 281.8 18.5 166 275-441 2-194 (253)
78 cd03264 ABC_drug_resistance_li 100.0 4.7E-35 1E-39 275.8 16.5 161 277-442 1-177 (211)
79 cd03219 ABC_Mj1267_LivG_branch 100.0 5.2E-35 1.1E-39 280.0 17.0 161 277-441 1-189 (236)
80 cd03256 ABC_PhnC_transporter A 100.0 5.3E-35 1.2E-39 280.7 17.0 162 277-441 1-190 (241)
81 PRK15112 antimicrobial peptide 100.0 8.8E-35 1.9E-39 283.9 18.5 167 275-441 3-195 (267)
82 PRK10247 putative ABC transpor 100.0 1.2E-34 2.6E-39 276.0 18.9 164 274-441 5-183 (225)
83 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 9.9E-35 2.2E-39 278.4 18.3 162 276-441 1-178 (236)
84 TIGR03608 L_ocin_972_ABC putat 100.0 6.2E-35 1.4E-39 273.7 16.1 159 279-441 1-180 (206)
85 PRK13539 cytochrome c biogenes 100.0 1.6E-34 3.5E-39 271.7 19.0 162 276-441 2-173 (207)
86 cd03262 ABC_HisP_GlnQ_permease 100.0 6.6E-35 1.4E-39 274.9 16.3 161 277-441 1-181 (213)
87 PRK13543 cytochrome c biogenes 100.0 1.7E-34 3.7E-39 272.9 18.8 165 273-441 8-183 (214)
88 PRK13540 cytochrome c biogenes 100.0 2.3E-34 5E-39 269.1 19.1 162 276-441 1-173 (200)
89 PRK11153 metN DL-methionine tr 100.0 1.3E-34 2.9E-39 292.2 18.7 163 276-441 1-186 (343)
90 TIGR02769 nickel_nikE nickel i 100.0 1.1E-34 2.3E-39 283.0 17.4 166 276-441 2-196 (265)
91 PRK11432 fbpC ferric transport 100.0 1E-34 2.2E-39 293.3 17.8 164 274-441 4-182 (351)
92 cd03260 ABC_PstB_phosphate_tra 100.0 1.4E-34 3E-39 275.6 17.7 161 277-442 1-188 (227)
93 PRK14250 phosphate ABC transpo 100.0 2.1E-34 4.6E-39 277.1 19.1 162 276-441 3-177 (241)
94 PRK13647 cbiO cobalt transport 100.0 1.1E-34 2.3E-39 284.4 17.3 165 275-441 3-184 (274)
95 TIGR03522 GldA_ABC_ATP gliding 100.0 2.4E-34 5.1E-39 285.6 19.9 163 276-442 2-180 (301)
96 cd03258 ABC_MetN_methionine_tr 100.0 1.3E-34 2.9E-39 276.8 17.4 163 276-441 1-186 (233)
97 cd03218 ABC_YhbG The ABC trans 100.0 1.4E-34 3E-39 276.4 17.5 161 277-441 1-179 (232)
98 TIGR03411 urea_trans_UrtD urea 100.0 1.5E-34 3.3E-39 277.9 17.8 164 275-442 1-190 (242)
99 PRK09536 btuD corrinoid ABC tr 100.0 1.5E-34 3.3E-39 296.0 18.7 163 275-441 2-185 (402)
100 cd03224 ABC_TM1139_LivF_branch 100.0 1.1E-34 2.5E-39 275.1 16.4 161 277-441 1-178 (222)
101 PRK13643 cbiO cobalt transport 100.0 1.5E-34 3.1E-39 285.4 17.5 165 276-441 1-190 (288)
102 cd03295 ABC_OpuCA_Osmoprotecti 100.0 1.5E-34 3.3E-39 278.1 17.3 163 277-441 1-181 (242)
103 TIGR02324 CP_lyasePhnL phospho 100.0 2E-34 4.3E-39 274.0 17.7 164 276-441 1-195 (224)
104 PRK13641 cbiO cobalt transport 100.0 2.4E-34 5.2E-39 283.7 18.8 165 276-441 2-191 (287)
105 PRK13631 cbiO cobalt transport 100.0 3.2E-34 6.8E-39 286.7 19.9 169 272-441 17-222 (320)
106 PRK11308 dppF dipeptide transp 100.0 1.9E-34 4.2E-39 289.0 18.3 168 274-441 3-200 (327)
107 PRK11264 putative amino-acid A 100.0 1.4E-34 3E-39 279.6 16.7 162 276-441 3-190 (250)
108 PRK13651 cobalt transporter AT 100.0 2.6E-34 5.7E-39 285.5 19.1 165 276-441 2-211 (305)
109 PRK13634 cbiO cobalt transport 100.0 2.1E-34 4.5E-39 284.6 18.0 165 276-441 2-191 (290)
110 PRK15079 oligopeptide ABC tran 100.0 2.1E-34 4.5E-39 289.2 18.3 168 274-441 6-207 (331)
111 PRK13637 cbiO cobalt transport 100.0 2E-34 4.3E-39 284.3 17.8 165 276-441 2-190 (287)
112 PRK11000 maltose/maltodextrin 100.0 1.7E-34 3.6E-39 294.0 17.8 162 276-441 3-179 (369)
113 PRK11124 artP arginine transpo 100.0 2.3E-34 5E-39 276.8 17.6 162 276-441 2-187 (242)
114 PRK10619 histidine/lysine/argi 100.0 2.3E-34 4.9E-39 279.4 17.7 164 275-441 4-198 (257)
115 PRK11300 livG leucine/isoleuci 100.0 2.5E-34 5.5E-39 278.5 17.9 163 275-441 4-199 (255)
116 TIGR03265 PhnT2 putative 2-ami 100.0 2.8E-34 6E-39 290.5 18.9 163 275-441 3-180 (353)
117 PRK10575 iron-hydroxamate tran 100.0 2.7E-34 5.9E-39 280.2 17.9 165 273-441 8-193 (265)
118 PRK10895 lipopolysaccharide AB 100.0 3.1E-34 6.8E-39 275.7 18.1 162 276-441 3-183 (241)
119 PRK09493 glnQ glutamine ABC tr 100.0 2.2E-34 4.8E-39 276.6 16.8 162 276-441 1-182 (240)
120 PRK13646 cbiO cobalt transport 100.0 2.6E-34 5.5E-39 283.4 17.6 165 276-441 2-191 (286)
121 PRK13638 cbiO cobalt transport 100.0 1.9E-34 4.2E-39 282.1 16.6 163 276-441 1-182 (271)
122 PRK15056 manganese/iron transp 100.0 3.1E-34 6.6E-39 280.9 17.8 165 276-441 6-188 (272)
123 PRK13548 hmuV hemin importer A 100.0 4.2E-34 9.1E-39 277.8 18.6 162 276-441 2-186 (258)
124 TIGR00957 MRP_assoc_pro multi 100.0 5.3E-32 1.1E-36 317.2 39.9 162 276-441 1284-1467(1522)
125 TIGR03740 galliderm_ABC gallid 100.0 4.4E-34 9.5E-39 271.5 18.3 161 277-441 1-170 (223)
126 TIGR01978 sufC FeS assembly AT 100.0 3.1E-34 6.7E-39 275.7 17.4 162 277-441 1-190 (243)
127 TIGR03410 urea_trans_UrtE urea 100.0 3.2E-34 6.9E-39 273.7 17.1 162 277-441 1-177 (230)
128 PRK09452 potA putrescine/sperm 100.0 5.4E-34 1.2E-38 290.1 19.8 165 273-441 11-190 (375)
129 cd03245 ABCC_bacteriocin_expor 100.0 6.3E-34 1.4E-38 269.7 18.9 162 277-442 3-187 (220)
130 PRK13636 cbiO cobalt transport 100.0 6.5E-34 1.4E-38 280.1 19.3 165 275-441 4-187 (283)
131 PRK13649 cbiO cobalt transport 100.0 3.1E-34 6.7E-39 281.9 17.0 165 276-441 2-191 (280)
132 PTZ00243 ABC transporter; Prov 100.0 1.9E-31 4.2E-36 312.2 43.4 162 276-441 1308-1492(1560)
133 PRK13644 cbiO cobalt transport 100.0 3.7E-34 8E-39 280.6 17.4 164 276-441 1-182 (274)
134 PRK13635 cbiO cobalt transport 100.0 3.9E-34 8.6E-39 281.1 17.7 165 275-441 4-186 (279)
135 cd03223 ABCD_peroxisomal_ALDP 100.0 5.4E-34 1.2E-38 259.1 17.1 137 277-441 1-137 (166)
136 PRK10419 nikE nickel transport 100.0 4.5E-34 9.9E-39 279.1 17.6 167 275-441 2-197 (268)
137 PRK13652 cbiO cobalt transport 100.0 5.7E-34 1.2E-38 279.7 18.2 165 275-441 2-183 (277)
138 PRK11231 fecE iron-dicitrate t 100.0 5.8E-34 1.3E-38 276.2 18.1 162 276-441 2-184 (255)
139 PRK10851 sulfate/thiosulfate t 100.0 6.7E-34 1.5E-38 287.7 18.9 162 276-441 2-182 (353)
140 TIGR00972 3a0107s01c2 phosphat 100.0 8.1E-34 1.7E-38 273.9 18.5 163 276-442 1-191 (247)
141 cd03298 ABC_ThiQ_thiamine_tran 100.0 6.5E-34 1.4E-38 268.0 17.2 159 277-441 1-174 (211)
142 PRK13632 cbiO cobalt transport 100.0 5.6E-34 1.2E-38 278.9 17.4 166 274-441 5-188 (271)
143 COG1118 CysA ABC-type sulfate/ 100.0 1.7E-34 3.7E-39 276.7 13.2 162 276-441 2-183 (345)
144 PRK11819 putative ABC transpor 100.0 6.8E-34 1.5E-38 304.5 19.3 164 274-441 4-209 (556)
145 PRK14242 phosphate transporter 100.0 9.5E-34 2.1E-38 274.3 18.4 164 274-441 4-195 (253)
146 PRK09984 phosphonate/organopho 100.0 7.3E-34 1.6E-38 276.6 17.7 163 275-441 3-198 (262)
147 PRK13650 cbiO cobalt transport 100.0 5.9E-34 1.3E-38 279.9 17.1 165 275-441 3-186 (279)
148 PRK13645 cbiO cobalt transport 100.0 1.3E-33 2.8E-38 278.8 19.1 165 276-441 6-196 (289)
149 PRK10253 iron-enterobactin tra 100.0 1.1E-33 2.4E-38 275.9 18.1 164 274-441 5-189 (265)
150 COG1137 YhbG ABC-type (unclass 100.0 2.4E-35 5.3E-40 266.8 5.9 163 275-441 3-185 (243)
151 PRK10636 putative ABC transpor 100.0 1.1E-33 2.3E-38 307.0 19.8 163 276-442 1-196 (638)
152 PRK13639 cbiO cobalt transport 100.0 9.5E-34 2.1E-38 277.8 17.5 164 276-441 1-183 (275)
153 PRK14247 phosphate ABC transpo 100.0 1.9E-33 4.1E-38 271.7 19.1 164 275-441 2-192 (250)
154 cd03294 ABC_Pro_Gly_Bertaine T 100.0 5.1E-34 1.1E-38 278.9 15.3 160 278-441 26-206 (269)
155 cd03254 ABCC_Glucan_exporter_l 100.0 1.7E-33 3.8E-38 268.3 18.4 162 277-441 3-185 (229)
156 PRK14248 phosphate ABC transpo 100.0 2.5E-33 5.4E-38 273.8 19.8 165 273-441 18-210 (268)
157 TIGR03005 ectoine_ehuA ectoine 100.0 1E-33 2.3E-38 273.9 16.9 161 277-441 1-192 (252)
158 TIGR01166 cbiO cobalt transpor 100.0 6.2E-34 1.3E-38 264.0 14.7 152 288-441 3-173 (190)
159 PRK11607 potG putrescine trans 100.0 2E-33 4.3E-38 286.3 19.5 164 274-441 17-195 (377)
160 PRK14254 phosphate ABC transpo 100.0 2.8E-33 6.2E-38 275.8 20.0 167 272-442 35-227 (285)
161 PRK10418 nikD nickel transport 100.0 2.8E-33 6.1E-38 271.3 19.6 164 276-441 4-186 (254)
162 TIGR03258 PhnT 2-aminoethylpho 100.0 1.5E-33 3.3E-38 285.7 18.4 162 276-441 5-183 (362)
163 PRK11614 livF leucine/isoleuci 100.0 1.2E-33 2.7E-38 270.9 16.8 163 275-441 4-183 (237)
164 PRK15093 antimicrobial peptide 100.0 1.3E-33 2.9E-38 283.6 17.6 167 275-441 2-204 (330)
165 TIGR02868 CydC thiol reductant 100.0 5E-33 1.1E-37 296.3 22.9 163 276-441 334-516 (529)
166 PRK13633 cobalt transporter AT 100.0 1.4E-33 3.1E-38 277.3 17.3 165 275-441 3-190 (280)
167 PRK11022 dppD dipeptide transp 100.0 1.8E-33 3.9E-38 282.0 18.3 166 276-441 3-199 (326)
168 TIGR01188 drrA daunorubicin re 100.0 1.3E-33 2.8E-38 280.5 16.7 155 284-442 1-171 (302)
169 TIGR01277 thiQ thiamine ABC tr 100.0 2.3E-33 5.1E-38 264.8 17.6 159 277-441 1-174 (213)
170 PRK13541 cytochrome c biogenes 100.0 3.1E-33 6.6E-38 260.5 18.0 160 276-440 1-168 (195)
171 PRK10771 thiQ thiamine transpo 100.0 2.1E-33 4.5E-38 268.5 17.2 160 276-441 1-175 (232)
172 PRK14259 phosphate ABC transpo 100.0 4.6E-33 1E-37 272.1 20.0 165 273-441 10-200 (269)
173 PRK14273 phosphate ABC transpo 100.0 3.4E-33 7.5E-38 270.6 18.9 165 274-442 5-197 (254)
174 cd03252 ABCC_Hemolysin The ABC 100.0 3.6E-33 7.8E-38 267.6 18.8 162 277-442 1-185 (237)
175 COG2274 SunT ABC-type bacterio 100.0 3.5E-33 7.6E-38 302.2 20.9 164 276-442 471-656 (709)
176 TIGR03873 F420-0_ABC_ATP propo 100.0 2.2E-33 4.7E-38 272.4 17.3 161 277-441 2-183 (256)
177 PRK14235 phosphate transporter 100.0 3.8E-33 8.2E-38 272.4 19.0 164 274-441 17-209 (267)
178 PRK13648 cbiO cobalt transport 100.0 2.7E-33 5.8E-38 273.7 17.8 166 274-441 5-188 (269)
179 PRK10744 pstB phosphate transp 100.0 4.7E-33 1E-37 270.6 19.4 164 274-441 11-202 (260)
180 PRK14241 phosphate transporter 100.0 3.9E-33 8.5E-38 270.9 18.7 163 276-441 4-194 (258)
181 COG0410 LivF ABC-type branched 100.0 2.2E-33 4.7E-38 260.4 16.0 165 275-442 2-183 (237)
182 PRK14267 phosphate ABC transpo 100.0 3.1E-33 6.7E-38 270.7 17.7 164 275-441 3-195 (253)
183 COG4555 NatA ABC-type Na+ tran 100.0 4.4E-34 9.5E-39 258.9 10.8 163 276-441 1-179 (245)
184 PRK11144 modC molybdate transp 100.0 3.4E-33 7.3E-38 282.9 18.6 159 276-441 1-174 (352)
185 COG1117 PstB ABC-type phosphat 100.0 1.1E-33 2.3E-38 258.7 13.2 165 274-442 5-196 (253)
186 cd03248 ABCC_TAP TAP, the Tran 100.0 5.2E-33 1.1E-37 264.6 18.6 165 274-442 9-197 (226)
187 PRK09473 oppD oligopeptide tra 100.0 4.6E-33 1E-37 279.4 19.0 169 273-441 9-207 (330)
188 TIGR02982 heterocyst_DevA ABC 100.0 5.4E-33 1.2E-37 263.6 18.4 163 276-441 1-187 (220)
189 PRK15439 autoinducer 2 ABC tra 100.0 5E-33 1.1E-37 295.0 20.1 164 274-441 9-186 (510)
190 PRK15064 ABC transporter ATP-b 100.0 3.8E-33 8.3E-38 297.3 19.0 163 276-441 1-201 (530)
191 cd03297 ABC_ModC_molybdenum_tr 100.0 3.4E-33 7.4E-38 263.8 16.4 157 277-441 2-177 (214)
192 cd03253 ABCC_ATM1_transporter 100.0 7.8E-33 1.7E-37 265.0 19.0 163 277-442 1-184 (236)
193 PRK13640 cbiO cobalt transport 100.0 7.4E-33 1.6E-37 272.5 19.3 166 274-441 3-189 (282)
194 cd03244 ABCC_MRP_domain2 Domai 100.0 7.3E-33 1.6E-37 262.6 18.4 162 277-442 3-186 (221)
195 PRK14268 phosphate ABC transpo 100.0 7E-33 1.5E-37 269.2 18.7 164 274-441 10-200 (258)
196 PRK10070 glycine betaine trans 100.0 4.7E-33 1E-37 284.9 18.3 148 291-441 42-210 (400)
197 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 4.9E-33 1.1E-37 297.8 19.2 164 274-441 2-207 (552)
198 PRK10762 D-ribose transporter 100.0 2.9E-33 6.2E-38 296.3 16.8 163 275-441 3-187 (501)
199 PRK13642 cbiO cobalt transport 100.0 6.9E-33 1.5E-37 272.0 18.3 164 276-441 4-186 (277)
200 cd03300 ABC_PotA_N PotA is an 100.0 4.3E-33 9.3E-38 266.4 16.3 161 277-441 1-176 (232)
201 PRK14274 phosphate ABC transpo 100.0 1.2E-32 2.6E-37 267.6 19.3 167 272-442 8-202 (259)
202 cd03214 ABC_Iron-Siderophores_ 100.0 2.1E-33 4.6E-38 258.4 13.3 143 278-441 1-143 (180)
203 PRK14269 phosphate ABC transpo 100.0 8E-33 1.7E-37 266.9 17.8 162 276-441 2-188 (246)
204 PRK14270 phosphate ABC transpo 100.0 8.3E-33 1.8E-37 267.4 17.9 165 274-442 2-194 (251)
205 PRK09700 D-allose transporter 100.0 4.1E-33 8.8E-38 295.8 17.1 163 275-441 4-191 (510)
206 PRK14239 phosphate transporter 100.0 1.1E-32 2.3E-37 266.7 18.3 163 275-441 4-194 (252)
207 CHL00131 ycf16 sulfate ABC tra 100.0 1.3E-32 2.9E-37 266.0 18.9 165 274-441 5-197 (252)
208 PRK09580 sufC cysteine desulfu 100.0 1.4E-32 3E-37 265.2 18.8 163 276-441 1-191 (248)
209 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 1E-32 2.2E-37 264.6 17.7 162 277-441 1-185 (238)
210 PRK14256 phosphate ABC transpo 100.0 1.2E-32 2.6E-37 266.5 18.3 164 275-441 3-194 (252)
211 cd03251 ABCC_MsbA MsbA is an e 100.0 1.4E-32 3E-37 262.9 18.3 161 277-441 1-184 (234)
212 PRK14272 phosphate ABC transpo 100.0 1.4E-32 3E-37 265.9 18.5 164 276-442 4-195 (252)
213 PRK14275 phosphate ABC transpo 100.0 1E-32 2.2E-37 272.0 17.9 166 273-442 36-229 (286)
214 cd03250 ABCC_MRP_domain1 Domai 100.0 1.7E-32 3.7E-37 257.1 18.5 158 277-440 1-173 (204)
215 PRK14265 phosphate ABC transpo 100.0 1.6E-32 3.6E-37 268.9 19.0 165 274-442 18-208 (274)
216 cd03267 ABC_NatA_like Similar 100.0 7.1E-33 1.5E-37 265.7 16.1 155 284-441 29-199 (236)
217 PRK13547 hmuV hemin importer A 100.0 1.3E-32 2.7E-37 269.3 18.1 162 276-441 1-200 (272)
218 PRK14245 phosphate ABC transpo 100.0 1.3E-32 2.7E-37 266.0 17.9 163 275-441 2-192 (250)
219 PRK14262 phosphate ABC transpo 100.0 1.3E-32 2.8E-37 265.8 18.0 164 275-442 2-193 (250)
220 PRK13549 xylose transporter AT 100.0 9.7E-33 2.1E-37 292.7 18.5 163 275-441 4-189 (506)
221 PRK14237 phosphate transporter 100.0 2.1E-32 4.5E-37 267.2 19.1 164 274-441 18-209 (267)
222 PRK11288 araG L-arabinose tran 100.0 1.2E-32 2.7E-37 291.5 19.0 163 275-441 3-186 (501)
223 cd03230 ABC_DR_subfamily_A Thi 100.0 1.4E-32 3.1E-37 251.3 16.6 131 277-441 1-141 (173)
224 PRK14238 phosphate transporter 100.0 2E-32 4.3E-37 267.9 18.7 165 273-441 21-213 (271)
225 PRK14251 phosphate ABC transpo 100.0 1.4E-32 3.1E-37 265.7 17.4 163 275-441 3-193 (251)
226 cd03369 ABCC_NFT1 Domain 2 of 100.0 3.2E-32 7E-37 255.8 19.2 155 275-441 5-171 (207)
227 PRK14243 phosphate transporter 100.0 1.8E-32 3.8E-37 267.3 18.1 164 275-442 9-198 (264)
228 COG0411 LivG ABC-type branched 100.0 2.5E-33 5.5E-38 261.9 11.5 164 275-442 3-196 (250)
229 PRK14240 phosphate transporter 100.0 2.5E-32 5.4E-37 263.9 18.9 162 276-441 3-192 (250)
230 PRK11147 ABC transporter ATPas 100.0 1.8E-32 3.9E-37 297.7 20.0 162 275-442 2-203 (635)
231 cd03299 ABC_ModC_like Archeal 100.0 1.5E-32 3.3E-37 263.2 17.2 160 277-441 1-175 (235)
232 cd03215 ABC_Carb_Monos_II This 100.0 1.4E-32 3.1E-37 253.4 16.2 136 274-441 2-150 (182)
233 PRK14255 phosphate ABC transpo 100.0 2.3E-32 5E-37 264.4 18.3 164 274-441 3-194 (252)
234 COG4988 CydD ABC-type transpor 100.0 2.4E-32 5.1E-37 282.1 19.4 163 276-441 320-502 (559)
235 PRK14249 phosphate ABC transpo 100.0 2.8E-32 6.1E-37 263.8 18.7 163 275-441 3-193 (251)
236 PRK14271 phosphate ABC transpo 100.0 2.5E-32 5.5E-37 267.9 18.5 164 274-441 19-209 (276)
237 cd03290 ABCC_SUR1_N The SUR do 100.0 3.3E-32 7.1E-37 257.8 18.6 155 278-436 2-181 (218)
238 PRK15134 microcin C ABC transp 100.0 1.4E-32 3E-37 292.9 18.1 168 274-441 3-202 (529)
239 PRK10261 glutathione transport 100.0 1.2E-32 2.6E-37 298.3 17.8 168 274-441 10-214 (623)
240 TIGR00968 3a0106s01 sulfate AB 100.0 2E-32 4.4E-37 262.6 17.4 161 277-441 1-176 (237)
241 PRK14246 phosphate ABC transpo 100.0 1.7E-32 3.7E-37 266.4 17.0 166 274-442 8-200 (257)
242 PRK14264 phosphate ABC transpo 100.0 3.2E-32 6.9E-37 270.8 19.2 173 266-442 35-247 (305)
243 cd03234 ABCG_White The White s 100.0 2.1E-32 4.7E-37 260.5 17.1 163 276-441 3-189 (226)
244 cd03246 ABCC_Protease_Secretio 100.0 1.6E-32 3.5E-37 250.9 15.6 130 277-441 1-142 (173)
245 cd03247 ABCC_cytochrome_bd The 100.0 2.1E-32 4.6E-37 251.2 16.3 133 277-441 1-144 (178)
246 PRK11174 cysteine/glutathione 100.0 4.6E-32 1E-36 292.4 21.6 162 276-441 349-531 (588)
247 TIGR02142 modC_ABC molybdenum 100.0 2.8E-32 6.1E-37 276.5 18.2 155 281-441 4-177 (354)
248 PRK14236 phosphate transporter 100.0 4.5E-32 9.7E-37 265.6 18.9 164 274-441 23-214 (272)
249 PRK10938 putative molybdenum t 100.0 1.2E-32 2.7E-37 290.8 16.0 162 276-441 3-181 (490)
250 cd03233 ABC_PDR_domain1 The pl 100.0 2.8E-32 6E-37 255.6 16.5 146 276-441 3-164 (202)
251 cd03229 ABC_Class3 This class 100.0 2.2E-32 4.8E-37 251.2 15.5 133 277-441 1-146 (178)
252 COG1119 ModF ABC-type molybden 100.0 5.7E-33 1.2E-37 259.6 11.4 167 273-441 28-217 (257)
253 PRK14253 phosphate ABC transpo 100.0 4.8E-32 1E-36 261.8 18.2 163 275-441 2-191 (249)
254 COG1245 Predicted ATPase, RNas 100.0 1.3E-31 2.8E-36 267.4 21.7 289 99-441 180-501 (591)
255 TIGR02633 xylG D-xylose ABC tr 100.0 2.4E-32 5.2E-37 289.3 17.5 163 276-441 1-187 (500)
256 PRK14260 phosphate ABC transpo 100.0 4.8E-32 1E-36 263.4 18.1 164 275-442 6-197 (259)
257 TIGR01186 proV glycine betaine 100.0 2.3E-32 5.1E-37 276.6 16.3 153 285-441 2-175 (363)
258 PRK14244 phosphate ABC transpo 100.0 4.3E-32 9.3E-37 262.5 17.0 161 277-441 6-195 (251)
259 COG4181 Predicted ABC-type tra 100.0 2.2E-32 4.8E-37 241.9 13.6 162 276-440 6-191 (228)
260 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 1.2E-31 2.6E-36 294.1 22.5 162 276-441 451-634 (686)
261 TIGR03269 met_CoM_red_A2 methy 100.0 3.7E-32 7.9E-37 289.2 17.8 162 277-441 1-214 (520)
262 cd03221 ABCF_EF-3 ABCF_EF-3 E 100.0 6E-32 1.3E-36 240.1 16.1 116 277-441 1-116 (144)
263 PRK14261 phosphate ABC transpo 100.0 7.8E-32 1.7E-36 260.9 18.2 164 275-442 5-196 (253)
264 KOG0057|consensus 100.0 5.7E-32 1.2E-36 275.8 17.9 161 276-440 351-532 (591)
265 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 100.0 3.7E-32 7.9E-37 258.8 15.5 160 277-441 23-188 (224)
266 TIGR03415 ABC_choXWV_ATP choli 100.0 4.4E-32 9.6E-37 275.9 17.0 158 280-441 28-210 (382)
267 cd03228 ABCC_MRP_Like The MRP 100.0 7.4E-32 1.6E-36 246.1 16.4 130 277-441 1-142 (171)
268 cd03216 ABC_Carb_Monos_I This 100.0 5.7E-32 1.2E-36 245.1 15.3 128 277-441 1-128 (163)
269 TIGR01193 bacteriocin_ABC ABC- 100.0 1.6E-31 3.5E-36 294.0 22.0 163 276-441 473-657 (708)
270 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 1.5E-31 3.3E-36 294.3 21.7 162 276-440 477-660 (710)
271 COG4152 ABC-type uncharacteriz 100.0 2.2E-32 4.7E-37 254.4 12.5 163 276-442 2-177 (300)
272 cd03237 ABC_RNaseL_inhibitor_d 100.0 6.7E-32 1.4E-36 260.5 16.3 154 284-441 1-161 (246)
273 PRK14258 phosphate ABC transpo 100.0 1.2E-31 2.6E-36 261.0 18.2 163 275-441 6-196 (261)
274 PRK11160 cysteine/glutathione 100.0 3.2E-31 7E-36 285.0 22.9 163 275-441 337-521 (574)
275 TIGR02770 nickel_nikD nickel i 100.0 6.7E-32 1.5E-36 257.9 15.5 150 292-441 1-171 (230)
276 PRK10790 putative multidrug tr 100.0 3.4E-31 7.4E-36 285.9 22.6 162 276-441 340-522 (592)
277 cd03213 ABCG_EPDR ABCG transpo 100.0 1.2E-31 2.6E-36 249.8 16.2 141 275-441 2-157 (194)
278 PRK10982 galactose/methyl gala 100.0 7.8E-32 1.7E-36 284.7 16.8 159 279-441 1-180 (491)
279 PRK11176 lipid transporter ATP 100.0 2.3E-31 5E-36 286.7 20.6 163 276-441 341-526 (582)
280 TIGR01184 ntrCD nitrate transp 100.0 1.2E-31 2.6E-36 256.2 16.3 146 293-441 1-160 (230)
281 PRK14252 phosphate ABC transpo 100.0 2.8E-31 6.2E-36 258.9 19.2 164 274-441 14-207 (265)
282 TIGR03375 type_I_sec_LssB type 100.0 3.9E-31 8.5E-36 290.4 22.6 163 276-441 463-647 (694)
283 COG3840 ThiQ ABC-type thiamine 100.0 5.3E-32 1.1E-36 241.7 12.5 159 276-440 1-174 (231)
284 PRK14266 phosphate ABC transpo 100.0 2.9E-31 6.3E-36 256.5 18.4 162 276-441 3-192 (250)
285 TIGR02857 CydD thiol reductant 100.0 1.8E-31 3.8E-36 284.5 18.4 163 276-441 320-504 (529)
286 cd03217 ABC_FeS_Assembly ABC-t 100.0 1.6E-31 3.5E-36 250.1 15.8 136 277-441 1-150 (200)
287 PRK14263 phosphate ABC transpo 100.0 3.9E-31 8.6E-36 257.4 19.1 164 274-441 6-195 (261)
288 COG1129 MglA ABC-type sugar tr 100.0 1.4E-30 2.9E-35 268.3 24.0 350 7-442 9-448 (500)
289 cd03289 ABCC_CFTR2 The CFTR su 100.0 4E-31 8.7E-36 258.9 19.1 159 277-441 3-184 (275)
290 TIGR00954 3a01203 Peroxysomal 100.0 2.8E-31 6E-36 289.1 19.6 163 275-441 450-628 (659)
291 cd03232 ABC_PDR_domain2 The pl 100.0 2.2E-31 4.9E-36 247.5 16.1 140 276-441 3-154 (192)
292 COG4619 ABC-type uncharacteriz 100.0 1.7E-32 3.6E-37 242.0 7.9 162 276-441 3-179 (223)
293 COG0444 DppD ABC-type dipeptid 100.0 2E-31 4.4E-36 258.9 16.0 166 276-441 1-199 (316)
294 TIGR02203 MsbA_lipidA lipid A 100.0 5E-31 1.1E-35 283.4 20.7 163 276-441 330-515 (571)
295 PRK13657 cyclic beta-1,2-gluca 100.0 2.7E-31 5.9E-36 286.4 18.4 163 276-441 334-517 (588)
296 TIGR02204 MsbA_rel ABC transpo 100.0 8.5E-31 1.8E-35 281.9 21.4 164 275-441 336-522 (576)
297 KOG0058|consensus 100.0 2.2E-31 4.8E-36 279.8 16.0 163 275-440 464-649 (716)
298 TIGR00958 3a01208 Conjugate Tr 100.0 1.4E-30 2.9E-35 286.5 22.9 159 275-436 477-658 (711)
299 PRK14257 phosphate ABC transpo 100.0 1.3E-30 2.8E-35 261.5 20.4 165 274-441 78-271 (329)
300 TIGR01842 type_I_sec_PrtD type 100.0 1.3E-30 2.8E-35 278.7 21.6 164 275-441 315-500 (544)
301 TIGR01192 chvA glucan exporter 100.0 2.3E-30 5.1E-35 278.8 23.2 163 276-441 334-517 (585)
302 cd03288 ABCC_SUR2 The SUR doma 100.0 1.2E-30 2.6E-35 253.4 18.6 164 274-441 17-202 (257)
303 COG4525 TauB ABC-type taurine 100.0 2.5E-31 5.5E-36 239.8 12.6 162 275-440 2-177 (259)
304 COG4987 CydC ABC-type transpor 100.0 4.7E-31 1E-35 268.9 15.6 162 276-440 336-519 (573)
305 PRK13546 teichoic acids export 100.0 8.8E-31 1.9E-35 255.2 16.9 147 290-441 37-189 (264)
306 COG4598 HisP ABC-type histidin 100.0 1E-31 2.2E-36 239.4 9.2 163 275-441 5-198 (256)
307 cd03291 ABCC_CFTR1 The CFTR su 100.0 2.7E-30 5.8E-35 253.9 20.2 157 273-438 36-202 (282)
308 PRK13545 tagH teichoic acids e 100.0 1.8E-30 4E-35 269.9 19.5 163 274-441 19-189 (549)
309 COG4559 ABC-type hemin transpo 100.0 6E-31 1.3E-35 240.3 13.7 163 276-442 1-188 (259)
310 PRK10522 multidrug transporter 100.0 3.1E-30 6.7E-35 276.0 21.5 156 276-439 322-493 (547)
311 TIGR01846 type_I_sec_HlyB type 100.0 3.1E-30 6.7E-35 283.3 21.5 163 276-441 455-639 (694)
312 COG1132 MdlB ABC-type multidru 100.0 1.1E-30 2.5E-35 280.5 17.4 162 276-440 328-510 (567)
313 PRK10789 putative multidrug tr 100.0 4.8E-30 1E-34 275.7 21.9 163 276-441 313-497 (569)
314 COG1123 ATPase components of v 100.0 1.9E-30 4.2E-35 268.8 17.3 167 275-441 4-200 (539)
315 COG4608 AppF ABC-type oligopep 100.0 8.8E-31 1.9E-35 249.5 12.9 146 275-442 3-156 (268)
316 PRK03695 vitamin B12-transport 100.0 2.4E-30 5.2E-35 250.0 16.1 155 278-441 2-179 (248)
317 cd03222 ABC_RNaseL_inhibitor T 100.0 2E-30 4.3E-35 237.7 14.1 114 280-441 4-117 (177)
318 TIGR03771 anch_rpt_ABC anchore 100.0 3.1E-30 6.7E-35 245.4 14.3 143 298-441 1-159 (223)
319 COG4133 CcmA ABC-type transpor 100.0 3.7E-30 8.1E-35 231.3 13.7 161 276-440 2-175 (209)
320 COG1129 MglA ABC-type sugar tr 100.0 5.8E-30 1.3E-34 263.6 17.1 165 274-442 6-192 (500)
321 TIGR01257 rim_protein retinal- 100.0 1.2E-29 2.6E-34 296.8 21.4 166 274-442 926-1108(2272)
322 cd03236 ABC_RNaseL_inhibitor_d 100.0 5.6E-30 1.2E-34 248.3 14.1 157 280-441 4-185 (255)
323 KOG0055|consensus 100.0 4.2E-30 9.2E-35 283.7 14.6 164 275-441 349-535 (1228)
324 TIGR01194 cyc_pep_trnsptr cycl 100.0 1.1E-29 2.4E-34 272.1 16.9 157 276-438 337-513 (555)
325 COG4604 CeuD ABC-type enteroch 100.0 9.1E-31 2E-35 236.5 7.1 162 276-441 1-181 (252)
326 TIGR01257 rim_protein retinal- 100.0 2.6E-29 5.7E-34 294.0 19.9 164 275-441 1936-2116(2272)
327 PTZ00265 multidrug resistance 100.0 1.7E-29 3.8E-34 293.8 17.7 163 276-441 1165-1404(1466)
328 COG3845 ABC-type uncharacteriz 100.0 1.5E-29 3.3E-34 256.0 14.4 164 275-442 3-187 (501)
329 PLN03073 ABC transporter F fam 100.0 1.4E-29 3E-34 276.7 14.5 158 274-441 175-390 (718)
330 cd03238 ABC_UvrA The excision 100.0 2.4E-29 5.2E-34 230.4 13.5 121 289-441 7-135 (176)
331 cd00267 ABC_ATPase ABC (ATP-bi 100.0 3.7E-29 8E-34 225.0 14.3 125 279-441 2-126 (157)
332 KOG0054|consensus 100.0 7.2E-27 1.6E-31 263.5 35.6 161 276-440 1138-1320(1381)
333 PLN03232 ABC transporter C fam 100.0 1.1E-28 2.4E-33 289.0 21.8 162 276-441 1234-1417(1495)
334 PRK10535 macrolide transporter 100.0 7.1E-29 1.5E-33 269.9 18.2 164 275-441 3-190 (648)
335 PLN03130 ABC transporter C fam 100.0 1.5E-28 3.2E-33 288.6 21.9 162 276-441 1237-1420(1622)
336 COG4161 ArtP ABC-type arginine 100.0 2.3E-29 5E-34 220.8 11.1 163 276-442 2-188 (242)
337 COG4107 PhnK ABC-type phosphon 100.0 2.6E-29 5.6E-34 222.9 11.1 166 274-440 4-196 (258)
338 PRK15177 Vi polysaccharide exp 100.0 7.6E-29 1.6E-33 234.3 14.5 145 291-440 1-149 (213)
339 PRK00349 uvrA excinuclease ABC 100.0 6.4E-28 1.4E-32 267.9 24.2 272 114-441 465-879 (943)
340 PTZ00265 multidrug resistance 100.0 1.1E-28 2.3E-33 287.3 17.4 163 276-441 382-625 (1466)
341 COG4778 PhnL ABC-type phosphon 100.0 1.6E-29 3.4E-34 223.5 7.9 164 276-441 4-198 (235)
342 COG3845 ABC-type uncharacteriz 100.0 2.5E-27 5.3E-32 240.0 23.9 352 8-441 6-449 (501)
343 PRK00635 excinuclease ABC subu 100.0 2E-27 4.3E-32 274.2 26.0 267 117-441 455-858 (1809)
344 PRK13409 putative ATPase RIL; 100.0 1E-28 2.3E-33 265.1 14.5 157 280-441 77-258 (590)
345 PLN03211 ABC transporter G-25; 100.0 2E-28 4.4E-33 265.9 16.1 160 278-441 70-252 (659)
346 TIGR00630 uvra excinuclease AB 100.0 3.8E-27 8.3E-32 261.3 25.8 269 116-441 465-877 (924)
347 PF00005 ABC_tran: ABC transpo 100.0 7.3E-29 1.6E-33 217.3 9.6 123 293-424 1-137 (137)
348 COG4586 ABC-type uncharacteriz 100.0 6.3E-29 1.4E-33 234.7 9.7 150 291-442 38-203 (325)
349 COG4167 SapF ABC-type antimicr 100.0 8.3E-29 1.8E-33 221.3 9.9 167 275-441 3-195 (267)
350 COG4175 ProV ABC-type proline/ 100.0 1.5E-28 3.2E-33 236.3 12.1 163 276-441 4-210 (386)
351 COG4618 ArpD ABC-type protease 100.0 8.3E-28 1.8E-32 243.3 16.3 164 275-441 333-518 (580)
352 KOG0055|consensus 99.9 7.3E-28 1.6E-32 266.1 14.8 163 276-441 987-1172(1228)
353 COG0396 sufC Cysteine desulfur 99.9 3.7E-27 8.1E-32 218.3 17.1 166 275-442 2-191 (251)
354 COG4148 ModC ABC-type molybdat 99.9 2.9E-28 6.2E-33 230.8 9.8 144 295-441 16-174 (352)
355 TIGR00957 MRP_assoc_pro multi 99.9 1.1E-26 2.3E-31 272.7 22.9 159 276-440 636-805 (1522)
356 TIGR01271 CFTR_protein cystic 99.9 3.7E-27 7.9E-32 275.9 18.6 161 276-441 1217-1399(1490)
357 TIGR00956 3a01205 Pleiotropic 99.9 2.3E-27 5.1E-32 275.6 16.2 163 276-441 759-948 (1394)
358 KOG0062|consensus 99.9 1.5E-27 3.2E-32 241.6 12.6 159 276-442 80-245 (582)
359 KOG0056|consensus 99.9 9.9E-28 2.1E-32 240.7 10.8 162 276-440 537-719 (790)
360 COG4674 Uncharacterized ABC-ty 99.9 2.7E-27 5.8E-32 213.8 10.4 163 275-441 4-193 (249)
361 PLN03130 ABC transporter C fam 99.9 1.2E-26 2.6E-31 272.5 18.2 159 275-439 613-785 (1622)
362 PLN03232 ABC transporter C fam 99.9 1.3E-26 2.7E-31 271.7 18.1 158 275-437 613-782 (1495)
363 TIGR01187 potA spermidine/putr 99.9 4.5E-27 9.7E-32 235.8 12.1 131 308-441 1-146 (325)
364 COG4136 ABC-type uncharacteriz 99.9 5.6E-27 1.2E-31 203.5 11.0 159 276-438 2-177 (213)
365 COG4172 ABC-type uncharacteriz 99.9 2E-26 4.2E-31 227.6 15.0 169 274-442 4-204 (534)
366 TIGR00955 3a01204 The Eye Pigm 99.9 1E-26 2.2E-31 251.8 12.5 150 289-441 37-212 (617)
367 KOG0927|consensus 99.9 2.5E-26 5.4E-31 233.9 14.2 160 276-442 75-268 (614)
368 PLN03140 ABC transporter G fam 99.9 5.4E-26 1.2E-30 264.0 18.6 163 276-441 867-1065(1470)
369 COG1101 PhnK ABC-type uncharac 99.9 1.3E-26 2.8E-31 212.4 9.8 162 276-438 1-191 (263)
370 COG1134 TagH ABC-type polysacc 99.9 1E-25 2.3E-30 211.1 15.0 148 290-441 40-193 (249)
371 TIGR01271 CFTR_protein cystic 99.9 9.1E-26 2E-30 264.2 18.2 142 290-437 439-590 (1490)
372 cd03270 ABC_UvrA_I The excisio 99.9 1.5E-25 3.3E-30 213.6 14.2 150 289-441 7-185 (226)
373 COG5265 ATM1 ABC-type transpor 99.9 8.7E-26 1.9E-30 224.3 12.4 162 276-440 262-444 (497)
374 KOG0061|consensus 99.9 7E-25 1.5E-29 236.2 15.0 164 276-442 25-217 (613)
375 COG4178 ABC-type uncharacteriz 99.9 1.2E-23 2.6E-28 220.9 23.7 163 274-440 390-560 (604)
376 PTZ00243 ABC transporter; Prov 99.9 1.4E-24 3.1E-29 254.6 17.4 141 289-436 672-823 (1560)
377 TIGR00956 3a01205 Pleiotropic 99.9 8.4E-25 1.8E-29 254.4 14.6 149 290-441 74-255 (1394)
378 cd03278 ABC_SMC_barmotin Barmo 99.9 7.1E-25 1.5E-29 204.7 11.1 129 294-441 14-163 (197)
379 KOG0059|consensus 99.9 2.6E-24 5.6E-29 240.9 13.5 164 275-441 563-744 (885)
380 PLN03140 ABC transporter G fam 99.9 1.9E-24 4.1E-29 251.1 12.7 151 289-441 177-382 (1470)
381 cd03272 ABC_SMC3_euk Eukaryoti 99.9 5.8E-23 1.2E-27 197.5 13.4 144 277-441 4-208 (243)
382 COG0178 UvrA Excinuclease ATPa 99.9 4.2E-21 9E-26 203.6 25.5 263 123-441 465-871 (935)
383 KOG0054|consensus 99.9 1.1E-21 2.4E-26 221.7 22.0 159 273-437 515-685 (1381)
384 cd03279 ABC_sbcCD SbcCD and ot 99.9 5.2E-22 1.1E-26 187.6 12.0 151 276-441 5-179 (213)
385 cd03273 ABC_SMC2_euk Eukaryoti 99.9 3.2E-22 7E-27 193.6 10.0 158 277-441 6-216 (251)
386 PRK00635 excinuclease ABC subu 99.9 2.5E-20 5.4E-25 215.9 27.1 246 123-441 1371-1748(1809)
387 cd03271 ABC_UvrA_II The excisi 99.8 2.8E-21 6E-26 187.4 10.8 151 291-441 9-218 (261)
388 KOG0060|consensus 99.8 1.1E-20 2.5E-25 194.1 15.3 163 274-440 431-615 (659)
389 cd03240 ABC_Rad50 The catalyti 99.8 3.6E-21 7.8E-26 180.7 10.1 131 296-441 16-168 (204)
390 cd03274 ABC_SMC4_euk Eukaryoti 99.8 1.4E-22 3E-27 191.3 -0.2 153 277-442 6-178 (212)
391 KOG0066|consensus 99.8 4.6E-21 1E-25 190.8 8.9 160 276-442 264-459 (807)
392 COG4615 PvdE ABC-type sideroph 99.8 5.9E-20 1.3E-24 181.4 14.2 157 275-438 321-491 (546)
393 cd03275 ABC_SMC1_euk Eukaryoti 99.8 1.2E-20 2.7E-25 182.2 9.2 157 277-442 4-206 (247)
394 KOG0064|consensus 99.8 3.1E-20 6.6E-25 188.7 11.8 163 276-442 481-659 (728)
395 cd03276 ABC_SMC6_euk Eukaryoti 99.8 5.9E-20 1.3E-24 171.7 11.9 134 292-441 11-159 (198)
396 KOG2355|consensus 99.8 2.4E-19 5.1E-24 163.5 12.8 163 274-440 11-192 (291)
397 COG4138 BtuD ABC-type cobalami 99.8 3E-20 6.6E-25 165.5 4.1 157 276-441 3-178 (248)
398 COG4170 SapD ABC-type antimicr 99.8 2.7E-19 5.8E-24 163.7 9.1 169 275-443 2-206 (330)
399 KOG0063|consensus 99.8 1.1E-18 2.5E-23 173.7 14.3 153 284-441 343-502 (592)
400 COG2401 ABC-type ATPase fused 99.8 1.4E-18 2.9E-23 172.7 10.7 147 291-440 397-552 (593)
401 KOG0065|consensus 99.8 2.3E-18 4.9E-23 191.4 10.6 163 276-441 787-976 (1391)
402 COG1245 Predicted ATPase, RNas 99.7 5.3E-18 1.2E-22 170.3 8.9 155 281-441 79-259 (591)
403 cd03280 ABC_MutS2 MutS2 homolo 99.7 4.6E-18 1E-22 159.1 7.2 110 292-439 16-135 (200)
404 cd03277 ABC_SMC5_euk Eukaryoti 99.7 2.5E-16 5.4E-21 148.9 8.5 144 293-441 14-176 (213)
405 cd03227 ABC_Class2 ABC-type Cl 99.6 3.5E-16 7.7E-21 141.5 7.5 112 294-441 12-127 (162)
406 cd03239 ABC_SMC_head The struc 99.6 2.2E-15 4.8E-20 138.5 10.4 46 396-441 95-144 (178)
407 cd03243 ABC_MutS_homologs The 99.6 1E-15 2.2E-20 143.5 6.0 110 295-436 21-131 (202)
408 cd03241 ABC_RecN RecN ATPase i 99.5 3.5E-14 7.5E-19 139.5 12.5 49 393-441 168-220 (276)
409 TIGR01069 mutS2 MutS2 family p 99.5 2.5E-13 5.3E-18 150.0 19.0 130 276-438 295-427 (771)
410 cd03285 ABC_MSH2_euk MutS2 hom 99.5 3.5E-14 7.5E-19 135.1 9.6 116 289-438 16-138 (222)
411 COG1121 ZnuC ABC-type Mn/Zn tr 99.5 1.1E-13 2.4E-18 132.3 13.0 143 20-200 45-227 (254)
412 COG1126 GlnQ ABC-type polar am 99.5 2.9E-14 6.3E-19 131.7 8.5 157 8-200 4-225 (240)
413 COG1125 OpuBA ABC-type proline 99.5 2.5E-14 5.4E-19 134.9 8.0 155 8-198 3-223 (309)
414 cd03282 ABC_MSH4_euk MutS4 hom 99.5 3.6E-14 7.8E-19 133.2 7.2 114 289-434 15-129 (204)
415 COG1124 DppF ABC-type dipeptid 99.5 6.1E-13 1.3E-17 125.2 14.5 147 9-191 6-223 (252)
416 cd03281 ABC_MSH5_euk MutS5 hom 99.5 2.3E-13 5E-18 128.7 11.2 100 297-431 21-126 (213)
417 cd03283 ABC_MutS-like MutS-lik 99.5 7.7E-14 1.7E-18 130.5 6.5 112 290-436 14-128 (199)
418 COG1122 CbiO ABC-type cobalt t 99.5 7.3E-13 1.6E-17 126.7 13.2 141 17-198 42-226 (235)
419 cd03242 ABC_RecF RecF is a rec 99.4 1.4E-12 3E-17 127.8 13.3 50 393-442 181-239 (270)
420 smart00534 MUTSac ATPase domai 99.4 1E-13 2.2E-18 128.2 4.4 99 306-436 2-101 (185)
421 KOG0065|consensus 99.4 4.4E-13 9.6E-18 149.8 8.9 149 290-441 128-306 (1391)
422 PRK13537 nodulation ABC transp 99.4 4.8E-12 1E-16 126.1 14.8 156 6-198 7-225 (306)
423 PRK10619 histidine/lysine/argi 99.4 6.2E-12 1.4E-16 122.1 15.2 83 116-199 129-240 (257)
424 TIGR01288 nodI ATP-binding ABC 99.4 5.8E-12 1.3E-16 125.4 15.0 80 117-198 114-222 (303)
425 cd03261 ABC_Org_Solvent_Resist 99.4 5.8E-12 1.3E-16 120.6 14.4 81 116-198 114-224 (235)
426 TIGR01978 sufC FeS assembly AT 99.4 1.5E-12 3.3E-17 125.0 10.3 83 116-199 120-233 (243)
427 PRK13651 cobalt transporter AT 99.4 5.3E-12 1.1E-16 125.8 14.4 83 115-198 141-252 (305)
428 TIGR01188 drrA daunorubicin re 99.4 5.2E-12 1.1E-16 125.7 14.3 141 17-198 31-211 (302)
429 PRK13643 cbiO cobalt transport 99.4 7.9E-12 1.7E-16 123.5 14.8 84 115-199 120-232 (288)
430 cd03265 ABC_DrrA DrrA is the A 99.4 8.6E-12 1.9E-16 118.2 14.4 78 116-195 109-216 (220)
431 PRK11701 phnK phosphonate C-P 99.4 3.1E-12 6.7E-17 124.3 11.4 82 116-198 128-239 (258)
432 cd03264 ABC_drug_resistance_li 99.4 9.4E-12 2E-16 117.1 13.9 74 116-190 108-209 (211)
433 TIGR00960 3a0501s02 Type II (G 99.4 5.9E-12 1.3E-16 118.9 12.5 72 116-188 116-216 (216)
434 COG1118 CysA ABC-type sulfate/ 99.4 6.5E-12 1.4E-16 121.7 12.6 157 8-198 4-226 (345)
435 PRK13634 cbiO cobalt transport 99.4 1E-11 2.2E-16 122.9 14.3 82 116-198 122-233 (290)
436 PRK14250 phosphate ABC transpo 99.4 1.7E-11 3.7E-16 117.9 15.5 78 117-194 109-216 (241)
437 cd03259 ABC_Carb_Solutes_like 99.4 1E-11 2.2E-16 117.0 13.6 73 117-190 109-211 (213)
438 TIGR03522 GldA_ABC_ATP gliding 99.4 1.4E-11 3E-16 122.5 15.1 81 116-198 111-219 (301)
439 COG0444 DppD ABC-type dipeptid 99.3 1.8E-11 3.9E-16 119.9 15.2 147 17-197 43-240 (316)
440 PRK13637 cbiO cobalt transport 99.3 1.6E-11 3.5E-16 121.2 15.1 83 115-198 119-232 (287)
441 PRK13641 cbiO cobalt transport 99.3 1.6E-11 3.6E-16 121.2 14.9 82 116-198 122-232 (287)
442 cd03301 ABC_MalK_N The N-termi 99.3 1.7E-11 3.6E-16 115.5 13.8 75 116-191 108-212 (213)
443 cd03269 ABC_putative_ATPase Th 99.3 1.7E-11 3.7E-16 115.2 13.6 74 116-190 106-208 (210)
444 PRK13646 cbiO cobalt transport 99.3 2.3E-11 5.1E-16 120.1 15.2 83 116-199 122-234 (286)
445 COG1127 Ttg2A ABC-type transpo 99.3 6.1E-12 1.3E-16 118.1 10.2 161 4-199 6-234 (263)
446 PRK13647 cbiO cobalt transport 99.3 1.8E-11 4E-16 120.1 14.2 81 116-198 116-225 (274)
447 PTZ00132 GTP-binding nuclear p 99.3 1.4E-11 3.1E-16 116.1 12.9 51 392-442 147-204 (215)
448 TIGR02314 ABC_MetN D-methionin 99.3 2.4E-11 5.1E-16 122.8 15.1 82 115-198 117-228 (343)
449 COG1120 FepC ABC-type cobalami 99.3 1.4E-11 3E-16 118.5 12.7 139 19-196 42-224 (258)
450 cd03295 ABC_OpuCA_Osmoprotecti 99.3 2.8E-11 6E-16 116.5 14.9 82 116-198 111-223 (242)
451 cd03266 ABC_NatA_sodium_export 99.3 1.7E-11 3.7E-16 115.9 13.2 74 116-190 114-216 (218)
452 PRK13536 nodulation factor exp 99.3 2.3E-11 5.1E-16 122.9 15.0 80 117-198 151-259 (340)
453 PRK10771 thiQ thiamine transpo 99.3 3.3E-11 7.2E-16 115.2 15.0 82 117-200 108-219 (232)
454 PRK11022 dppD dipeptide transp 99.3 3E-11 6.4E-16 121.5 15.1 146 17-197 45-240 (326)
455 cd03226 ABC_cobalt_CbiO_domain 99.3 2.1E-11 4.5E-16 114.3 13.1 71 117-188 105-204 (205)
456 cd03284 ABC_MutS1 MutS1 homolo 99.3 3.4E-12 7.5E-17 120.9 7.8 112 290-440 18-140 (216)
457 PRK11264 putative amino-acid A 99.3 3.1E-11 6.8E-16 116.5 14.6 80 117-198 123-231 (250)
458 PRK09493 glnQ glutamine ABC tr 99.3 3.2E-11 6.9E-16 115.8 14.5 81 117-199 115-224 (240)
459 PRK11000 maltose/maltodextrin 99.3 3.8E-11 8.1E-16 122.7 15.9 81 116-198 111-221 (369)
460 PRK11831 putative ABC transpor 99.3 2.9E-11 6.3E-16 118.3 14.4 80 117-198 122-231 (269)
461 PRK15112 antimicrobial peptide 99.3 3.6E-11 7.8E-16 117.5 15.0 83 116-199 126-238 (267)
462 TIGR01186 proV glycine betaine 99.3 3.8E-11 8.3E-16 122.1 15.6 142 17-199 31-218 (363)
463 cd03219 ABC_Mj1267_LivG_branch 99.3 2.9E-11 6.2E-16 115.7 13.9 81 116-198 121-230 (236)
464 cd03293 ABC_NrtD_SsuB_transpor 99.3 4.8E-11 1E-15 113.1 14.6 72 117-189 110-213 (220)
465 PRK13649 cbiO cobalt transport 99.3 3.9E-11 8.4E-16 118.0 14.3 81 117-198 123-232 (280)
466 PRK11247 ssuB aliphatic sulfon 99.3 4.5E-11 9.7E-16 116.3 14.5 146 6-194 12-217 (257)
467 PRK13631 cbiO cobalt transport 99.3 4.1E-11 8.9E-16 120.2 14.6 84 116-200 153-265 (320)
468 PRK11650 ugpC glycerol-3-phosp 99.3 4.9E-11 1.1E-15 121.2 15.3 81 116-198 112-222 (356)
469 TIGR02315 ABC_phnC phosphonate 99.3 3.3E-11 7.2E-16 115.8 13.3 81 116-198 123-233 (243)
470 COG1116 TauB ABC-type nitrate/ 99.3 2.8E-11 6.1E-16 114.7 12.3 130 17-186 41-207 (248)
471 PRK11153 metN DL-methionine tr 99.3 5.5E-11 1.2E-15 120.4 15.4 80 117-198 119-228 (343)
472 COG1135 AbcC ABC-type metal io 99.3 2.7E-11 5.9E-16 117.6 12.4 133 35-203 58-235 (339)
473 TIGR02769 nickel_nikE nickel i 99.3 6.6E-11 1.4E-15 115.5 15.3 82 116-198 127-238 (265)
474 TIGR03265 PhnT2 putative 2-ami 99.3 4.1E-11 9E-16 121.7 14.3 80 116-197 112-221 (353)
475 PRK11124 artP arginine transpo 99.3 4.8E-11 1E-15 114.7 14.1 81 117-199 120-229 (242)
476 PRK10895 lipopolysaccharide AB 99.3 4.7E-11 1E-15 114.7 14.0 82 116-199 115-225 (241)
477 cd03296 ABC_CysA_sulfate_impor 99.3 5.9E-11 1.3E-15 114.0 14.5 80 117-198 115-224 (239)
478 PRK10908 cell division protein 99.3 5E-11 1.1E-15 113.1 13.8 73 117-190 116-217 (222)
479 PRK11432 fbpC ferric transport 99.3 5.6E-11 1.2E-15 120.6 15.0 153 8-197 8-223 (351)
480 PRK11308 dppF dipeptide transp 99.3 6.3E-11 1.4E-15 119.2 15.2 81 116-197 131-241 (327)
481 cd03294 ABC_Pro_Gly_Bertaine T 99.3 8.1E-11 1.8E-15 115.2 15.6 80 117-198 139-248 (269)
482 PRK11248 tauB taurine transpor 99.3 5.8E-11 1.3E-15 115.3 14.3 73 117-190 107-211 (255)
483 PRK09984 phosphonate/organopho 99.3 6.3E-11 1.4E-15 115.4 14.6 81 116-198 130-240 (262)
484 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.3 3.9E-11 8.4E-16 113.4 12.8 71 116-188 118-218 (218)
485 PF02463 SMC_N: RecF/RecN/SMC 99.3 8.5E-12 1.8E-16 118.1 8.2 64 372-442 120-187 (220)
486 PRK15079 oligopeptide ABC tran 99.3 8.3E-11 1.8E-15 118.4 15.6 82 116-198 138-249 (331)
487 cd03225 ABC_cobalt_CbiO_domain 99.3 4.4E-11 9.5E-16 112.5 12.7 70 117-187 113-211 (211)
488 PRK15093 antimicrobial peptide 99.3 1.5E-10 3.3E-15 116.6 17.4 152 17-198 45-246 (330)
489 cd03256 ABC_PhnC_transporter A 99.3 7.4E-11 1.6E-15 113.2 14.3 81 116-198 122-232 (241)
490 cd03300 ABC_PotA_N PotA is an 99.3 8E-11 1.7E-15 112.6 14.4 80 116-197 108-217 (232)
491 TIGR03873 F420-0_ABC_ATP propo 99.3 8.1E-11 1.8E-15 114.2 14.6 80 117-198 116-224 (256)
492 PRK14242 phosphate transporter 99.3 2.6E-11 5.6E-16 117.4 11.1 81 117-198 124-235 (253)
493 TIGR03005 ectoine_ehuA ectoine 99.3 8.4E-11 1.8E-15 113.8 14.5 81 117-199 125-235 (252)
494 PRK13636 cbiO cobalt transport 99.3 1E-10 2.2E-15 115.3 15.3 83 116-200 119-231 (283)
495 cd03262 ABC_HisP_GlnQ_permease 99.3 4.9E-11 1.1E-15 112.3 12.5 72 116-188 113-213 (213)
496 TIGR02673 FtsE cell division A 99.3 5.2E-11 1.1E-15 112.2 12.6 71 116-187 115-214 (214)
497 PRK10070 glycine betaine trans 99.3 1.3E-10 2.7E-15 119.7 16.4 140 18-198 67-252 (400)
498 PRK11607 potG putrescine trans 99.3 8.3E-11 1.8E-15 120.4 14.9 81 115-197 126-236 (377)
499 PRK10584 putative ABC transpor 99.3 1.1E-10 2.4E-15 111.1 14.9 73 116-190 124-226 (228)
500 cd03297 ABC_ModC_molybdenum_tr 99.3 9E-11 1.9E-15 110.7 14.1 73 117-190 110-212 (214)
No 1
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=100.00 E-value=1.6e-85 Score=688.46 Aligned_cols=427 Identities=35% Similarity=0.579 Sum_probs=382.5
Q ss_pred hhhhhhhhcchHHHHHHHcccccc---------C------------C--CCCcceEEecCCceEEEEecccCCC-CchHH
Q psy208 8 TVSNSIFCFSSEFYCKALTLHLHL---------E------------G--GMVSGQLRIPSHISVLHVEQEVVGD-DTPAI 63 (443)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~---------~------------~--~~~~G~i~~~~~~~i~~l~Q~~~~~-~~~~~ 63 (443)
++.|+.+.||...+|+.+++.+.+ + | .+++|+|.++++++++|++|+++.+ ..|+.
T Consensus 5 ~~~~ls~~~g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~~~v~~l~Q~~~~~~~~tv~ 84 (530)
T COG0488 5 TLENLSLAYGDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYLSQEPPLDPEKTVL 84 (530)
T ss_pred EEeeeEEeeCCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCCceEEEeCCCCCcCCCccHH
Confidence 567889999999999999988888 1 1 2688999999999999999999875 56999
Q ss_pred HHHHhccHHHHHHHHHHHHHHHHHhCCCCChhhHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCCChhhhhccCCCCChH
Q psy208 64 DSVLECDTKRQNLLNREKTITQAINNGTADANMSTELTQVFAELEAIEADKAPARASVILAGLGFTPEMQKRATKHFSGG 143 (443)
Q Consensus 64 ~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~~~L~~lgl~~~~~~~~~~~LSGG 143 (443)
++|+.++..+.++.++++.+++.++.. ....+.++.++++..++|++++|+..+|.+|||+.. ++++++||||
T Consensus 85 ~~v~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~--~~~~~~LSGG 157 (530)
T COG0488 85 DYVIEGFGELRELLAELEEAYALLADP-----DDELLAELEALLEELDGWTLEARAEEALLGLGFPDE--DRPVSSLSGG 157 (530)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHhcccc-----hhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc--cCchhhcCHH
Confidence 999999999999999999988877432 345667777777778889999999999999999975 8999999999
Q ss_pred HHH--------------------------HHHHHHHHHhhhCCCeEEEEecCHHHHhccCCcEEEEeCCeeEEEcCChhH
Q psy208 144 WRK--------------------------MAIIWLENYLQNWPTTLLVVSHDRHFLDSVPTDIFHLHSQRIDTYRGNYEA 197 (443)
Q Consensus 144 qr~--------------------------~~i~wL~~~L~~~~~tviiVSHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~ 197 (443)
||+ ++|.||++||++|++|||||||||+|||+|||+|++|+.|++..|.|||+.
T Consensus 158 ~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~~gtviiVSHDR~FLd~V~t~I~~ld~g~l~~y~Gny~~ 237 (530)
T COG0488 158 WRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRYPGTVIVVSHDRYFLDNVATHILELDRGKLTPYKGNYSS 237 (530)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHhhheEEecCCceeEecCCHHH
Confidence 999 899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC---CC-CCccccccccccCCCC-CC
Q psy208 198 FDKIKTEKLKNQQREIEAQRMHREHVQKFIDTFRYNANRASSVQSKIKQLERLPE---LK-PIEKEVEVVLKFPDTE-LL 272 (443)
Q Consensus 198 y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~---~~-~~~~~~~~~~~~~~~~-~~ 272 (443)
|.++|+++.+++.+.++++++++++++.|++++..++++++++++|+++++++.. .. +.....+..+.|+.++ ..
T Consensus 238 ~~~~r~~~~~~~~~~~~~~~~~~~~~~~~i~r~~~~~~~~k~a~sr~k~l~k~~~~~~~~~~~~~~~~~~~~f~~~~~~~ 317 (530)
T COG0488 238 YLEQKAERLRQEAAAYEKQQKELAKEQEWIRRGKAAASKAKKAKSRIKRLEKLEARLAEERPVEEGKPLAFRFPPPGKRL 317 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhhhhcccccccccceeeccCCcccC
Confidence 9999999999999999999999999999999998888888899999999998873 22 2222333445676665 37
Q ss_pred CCCeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCceEEEEeccCcccc
Q psy208 273 SPPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQ 352 (443)
Q Consensus 273 ~~~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ig~~~Q~~~~~ 352 (443)
++++++++|++++|++++++++++||.|.+|++|||+||||+|||||||+|+|...|.+|+|.++.+.++||++|+.. .
T Consensus 318 g~~vl~~~~~~~~y~~~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~-~ 396 (530)
T COG0488 318 GKLVLEFENVSKGYDGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRD-E 396 (530)
T ss_pred CCeeEEEeccccccCCCceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhh-h
Confidence 889999999999997667899999999999999999999999999999999999999999999999999999999874 3
Q ss_pred cccchhHHHHHHHhCCCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCCHHHHH
Q psy208 353 LDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIE 432 (443)
Q Consensus 353 l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD~~s~~ 432 (443)
+..+.++.+++....+...+..++.+|+.|+|+++...++++.||||||.||.||++++.+|+||||||||||||+++++
T Consensus 397 l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~ 476 (530)
T COG0488 397 LDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLE 476 (530)
T ss_pred cCccCcHHHHHHhhCccccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHH
Confidence 44677899999887766568899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcccc
Q psy208 433 ALGKAINKYT 442 (443)
Q Consensus 433 ~l~~~L~~~~ 442 (443)
+|+++|.+|+
T Consensus 477 aLe~aL~~f~ 486 (530)
T COG0488 477 ALEEALLDFE 486 (530)
T ss_pred HHHHHHHhCC
Confidence 9999999996
No 2
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.2e-70 Score=588.75 Aligned_cols=425 Identities=33% Similarity=0.560 Sum_probs=344.7
Q ss_pred hhhhhhhhcchHHHHHHHcccccc---------C------------CC--CCcceEEecCCceEEEEecccCCCCchHHH
Q psy208 8 TVSNSIFCFSSEFYCKALTLHLHL---------E------------GG--MVSGQLRIPSHISVLHVEQEVVGDDTPAID 64 (443)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~---------~------------~~--~~~G~i~~~~~~~i~~l~Q~~~~~~~~~~~ 64 (443)
.+.|+++.|+...+|+.+++.+.+ + |. ||+|+|.+.++.+++|++|+......+.++
T Consensus 3 ~i~nls~~~g~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~~i~~~~q~~~~~~~~~~~ 82 (638)
T PRK10636 3 VFSSLQIRRGVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQLAWVNQETPALPQPALE 82 (638)
T ss_pred EEEEEEEEeCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCCCCCHHH
Confidence 367888888888888888888877 1 22 688999999888999999975433356777
Q ss_pred HHHhccHHHHHHHHHHHHHHHHHhCCCCChhhHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCCChhhhhccCCCCChHH
Q psy208 65 SVLECDTKRQNLLNREKTITQAINNGTADANMSTELTQVFAELEAIEADKAPARASVILAGLGFTPEMQKRATKHFSGGW 144 (443)
Q Consensus 65 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~~~L~~lgl~~~~~~~~~~~LSGGq 144 (443)
++.........+..++..++.. . ....+..+...++..++|+++.++..+|.++||.+..+++++.+|||||
T Consensus 83 ~v~~~~~~~~~l~~~~~~~~~~-----~---~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSgGe 154 (638)
T PRK10636 83 YVIDGDREYRQLEAQLHDANER-----N---DGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGGW 154 (638)
T ss_pred HHHHhhHHHHHHHHHHHHHhcc-----C---CHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhhcCHHH
Confidence 7765443333333332222110 0 1123444455556677889999999999999997545789999999999
Q ss_pred HH--------------------------HHHHHHHHHhhhCCCeEEEEecCHHHHhccCCcEEEEeCCeeEEEcCChhHH
Q psy208 145 RK--------------------------MAIIWLENYLQNWPTTLLVVSHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAF 198 (443)
Q Consensus 145 r~--------------------------~~i~wL~~~L~~~~~tviiVSHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y 198 (443)
|+ .++.||+++|+++++|||+||||++|++.+||+|++|++|++..|.|||+.|
T Consensus 155 rqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~~~tviivsHd~~~l~~~~d~i~~L~~G~i~~~~g~~~~~ 234 (638)
T PRK10636 155 RMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSYQGTLILISHDRDFLDPIVDKIIHIEQQSLFEYTGNYSSF 234 (638)
T ss_pred HHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHhcCEEEEEeCCEEEEecCCHHHH
Confidence 99 7999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccccccccCCCCCCCCCeEE
Q psy208 199 DKIKTEKLKNQQREIEAQRMHREHVQKFIDTFRYNANRASSVQSKIKQLERLPELKPIEKEVEVVLKFPDTELLSPPILQ 278 (443)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 278 (443)
..+++++.+.+.+.++++++++++++.|+++++..+.++++++++.++++++....+........+.|+.+...++++|+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~~~a~~~~~a~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 314 (638)
T PRK10636 235 EVQRATRLAQQQAMYESQQERVAHLQSYIDRFRAKATKAKQAQSRIKMLERMELIAPAHVDNPFHFSFRAPESLPNPLLK 314 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhhcccccccCCceeEecCCCccCCCceEE
Confidence 99998888888889999999999999999987776667778899999888876433222123345566555555678999
Q ss_pred EeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCceEEEEeccCcccccccchh
Q psy208 279 LSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLR 358 (443)
Q Consensus 279 ~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ig~~~Q~~~~~l~~~~~ 358 (443)
++||+++|+ ++++|+|+||+|.+|+++||+||||||||||||+|+|+++|++|+|.+..+..+||++|+....+....+
T Consensus 315 ~~~l~~~y~-~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~igy~~Q~~~~~l~~~~~ 393 (638)
T PRK10636 315 MEKVSAGYG-DRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLGYFAQHQLEFLRADES 393 (638)
T ss_pred EEeeEEEeC-CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCCEEEEEecCcchhhCCccch
Confidence 999999996 5679999999999999999999999999999999999999999999997777899999975333444455
Q ss_pred HHHHHHHhCCCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHH
Q psy208 359 CVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAI 438 (443)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L 438 (443)
+.+.+....+......+..+|+.|+|..+..++++++|||||||||+||++++.+|+||||||||||||+.+++.|.++|
T Consensus 394 ~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L 473 (638)
T PRK10636 394 PLQHLARLAPQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEAL 473 (638)
T ss_pred HHHHHHHhCchhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHH
Confidence 55555432223345678899999999766788999999999999999999999999999999999999999999999999
Q ss_pred ccc
Q psy208 439 NKY 441 (443)
Q Consensus 439 ~~~ 441 (443)
.+|
T Consensus 474 ~~~ 476 (638)
T PRK10636 474 IDF 476 (638)
T ss_pred HHc
Confidence 887
No 3
>KOG0927|consensus
Probab=100.00 E-value=1.3e-68 Score=540.94 Aligned_cols=430 Identities=36% Similarity=0.636 Sum_probs=377.9
Q ss_pred hhhhhhhhcchHHHHHHHcccccc---------CCC--------CCcceEEecCCceEEEEecccCCCCchHHHHHH-hc
Q psy208 8 TVSNSIFCFSSEFYCKALTLHLHL---------EGG--------MVSGQLRIPSHISVLHVEQEVVGDDTPAIDSVL-EC 69 (443)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~---------~~~--------~~~G~i~~~~~~~i~~l~Q~~~~~~~~~~~~~~-~~ 69 (443)
.+.|+.+.|-+..+++-.++++++ +|. ...+.+.+|..+.+..+.++.++...++++.++ ..
T Consensus 77 k~~sls~s~~g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls~e~~ps~~~av~~v~~~~ 156 (614)
T KOG0927|consen 77 KIESLSLSFHGVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSREIEPSEKQAVQAVVMET 156 (614)
T ss_pred eeeeeeeccCCceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhcccCCCchHHHHHHHhhhh
Confidence 577888889888899888888887 221 134566788889999999998887777788777 44
Q ss_pred cHHHHHHHHHHHHHHHHHhCCCCChhhHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCCChhhhhccCCCCChHHHH---
Q psy208 70 DTKRQNLLNREKTITQAINNGTADANMSTELTQVFAELEAIEADKAPARASVILAGLGFTPEMQKRATKHFSGGWRK--- 146 (443)
Q Consensus 70 ~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--- 146 (443)
+.+...++...+++....+ +...+.+..++++++..+...++.|+..+|.+|||...++++.+.+||||||+
T Consensus 157 ~~e~~rle~~~E~l~~~~d-----~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~SgGwrmR~a 231 (614)
T KOG0927|consen 157 DHERKRLEYLAEDLAQACD-----DKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLSGGWRMRAA 231 (614)
T ss_pred HHHHHHHHHHHHHHHhhcc-----chhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhccCchHHHHHH
Confidence 4456666666555554331 23467889999999999999999999999999999988999999999999999
Q ss_pred -----------------------HHHHHHHHHhhhCCC-eEEEEecCHHHHhccCCcEEEEeCCeeEEEcCChhHHHHHH
Q psy208 147 -----------------------MAIIWLENYLQNWPT-TLLVVSHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAFDKIK 202 (443)
Q Consensus 147 -----------------------~~i~wL~~~L~~~~~-tviiVSHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y~~~~ 202 (443)
+++.||++||+.|.. ++|||||+++||+.|||+||+++.+++..|.|||+.|...|
T Consensus 232 LAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~~~lVi~sh~QDfln~vCT~Ii~l~~kkl~~y~Gnydqy~~tr 311 (614)
T KOG0927|consen 232 LARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDRIILVIVSHSQDFLNGVCTNIIHLDNKKLIYYEGNYDQYVKTR 311 (614)
T ss_pred HHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccCceEEEEecchhhhhhHhhhhheecccceeeecCCHHHHhhHH
Confidence 899999999999988 89999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCCC---CCCCccccccccccCCCCCCCCCeEE
Q psy208 203 TEKLKNQQREIEAQRMHREHVQKFIDTFRY-NANRASSVQSKIKQLERLPE---LKPIEKEVEVVLKFPDTELLSPPILQ 278 (443)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~ 278 (443)
.+..+++.++++++|+++.+++.++.+++. .+....+++++.+.++++.. ...+..+....+.|+.-...+.|++.
T Consensus 312 ~E~~~~q~K~~~kqqk~i~~~K~~ia~~g~g~a~~~rka~s~~K~~~km~~~gL~ek~~~~k~l~~~f~~vg~~p~pvi~ 391 (614)
T KOG0927|consen 312 SELEENQMKAYEKQQKQIAHMKDLIARFGHGSAKLGRKAQSKEKTLDKMEADGLTEKVVGEKVLSFRFPEVGKIPPPVIM 391 (614)
T ss_pred HHHhHHHHHHHHHHHhHHHHhhHHHHhhcccchhhhHHHhhhhhhHHHHhhccccccccCCceEEEEcccccCCCCCeEE
Confidence 999999999999999999999999998875 34556788889888887653 23344455677888876666789999
Q ss_pred EeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCceEEEEeccCcccccccchh
Q psy208 279 LSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLR 358 (443)
Q Consensus 279 ~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ig~~~Q~~~~~l~~~~~ 358 (443)
+.|++|+|.++..++++++|-|+.++++++|||||+|||||||+++|.+.|+.|.|..+...+++++.|+..+.++.+.+
T Consensus 392 ~~nv~F~y~~~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~~~~~y~Qh~~e~ldl~~s 471 (614)
T KOG0927|consen 392 VQNVSFGYSDNPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNKLPRYNQHLAEQLDLDKS 471 (614)
T ss_pred EeccccCCCCcchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccccccccccccccchhhhhhhHhhcCcchh
Confidence 99999999866679999999999999999999999999999999999999999999988888899999998888999999
Q ss_pred HHHHHHHhCCC-CCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHH
Q psy208 359 CVQLLEAAFPG-KPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKA 437 (443)
Q Consensus 359 ~~~~~~~~~~~-~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~ 437 (443)
..+++...+++ ...+.++.+|++|||.++....++++||+|||.||++|++++.+|++|||||||||||+++++.+.++
T Consensus 472 ~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laea 551 (614)
T KOG0927|consen 472 SLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEA 551 (614)
T ss_pred HHHHHHHhccccchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHH
Confidence 99999888885 56788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hcccc
Q psy208 438 INKYT 442 (443)
Q Consensus 438 L~~~~ 442 (443)
|++|+
T Consensus 552 iNe~~ 556 (614)
T KOG0927|consen 552 INEFP 556 (614)
T ss_pred HhccC
Confidence 99986
No 4
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=5.9e-66 Score=561.76 Aligned_cols=434 Identities=44% Similarity=0.768 Sum_probs=344.4
Q ss_pred hhhhhhhhcchHHHHHHHcccccc---------CCC-------CCcceE--EecCCceEEEEecccCCCCchHHHHHHhc
Q psy208 8 TVSNSIFCFSSEFYCKALTLHLHL---------EGG-------MVSGQL--RIPSHISVLHVEQEVVGDDTPAIDSVLEC 69 (443)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~---------~~~-------~~~G~i--~~~~~~~i~~l~Q~~~~~~~~~~~~~~~~ 69 (443)
.+.|+++.|+...+|+.+++.+.+ +|. .-+|.. .+|.+.+|+|++|++..+..++.+.++.+
T Consensus 179 ~i~nls~~y~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~~~v~~~ 258 (718)
T PLN03073 179 HMENFSISVGGRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTALQCVLNT 258 (718)
T ss_pred EEceEEEEeCCCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHHHHHHHh
Confidence 467899999888899999988888 221 112321 15778899999998765556777777766
Q ss_pred cHHHHHHHHHHHHHHHHH-----h-----------CCCCChhhHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCCChhhh
Q psy208 70 DTKRQNLLNREKTITQAI-----N-----------NGTADANMSTELTQVFAELEAIEADKAPARASVILAGLGFTPEMQ 133 (443)
Q Consensus 70 ~~~~~~l~~~~~~l~~~~-----~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~~~L~~lgl~~~~~ 133 (443)
+.....+.++...+..+. . .+.+.++..+++.+++++++..++|.+++|+..+|.++||++..+
T Consensus 259 ~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~lgl~~~~~ 338 (718)
T PLN03073 259 DIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGLSFTPEMQ 338 (718)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHCCCChHHH
Confidence 655444443322222111 0 000112355789999999999999999999999999999986667
Q ss_pred hccCCCCChHHHH--------------------------HHHHHHHHHhhhCCCeEEEEecCHHHHhccCCcEEEEeCCe
Q psy208 134 KRATKHFSGGWRK--------------------------MAIIWLENYLQNWPTTLLVVSHDRHFLDSVPTDIFHLHSQR 187 (443)
Q Consensus 134 ~~~~~~LSGGqr~--------------------------~~i~wL~~~L~~~~~tviiVSHDr~fLd~v~~~i~~l~~g~ 187 (443)
++++.+||||||+ .++.||.++|+++++|||+||||++|++.+||+|++|++|+
T Consensus 339 ~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~tviivsHd~~~l~~~~d~i~~l~~g~ 418 (718)
T PLN03073 339 VKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKWPKTFIVVSHAREFLNTVVTDILHLHGQK 418 (718)
T ss_pred hCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCE
Confidence 8999999999999 79999999999999999999999999999999999999999
Q ss_pred eEEEcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccccccccC
Q psy208 188 IDTYRGNYEAFDKIKTEKLKNQQREIEAQRMHREHVQKFIDTFRYNANRASSVQSKIKQLERLPELKPIEKEVEVVLKFP 267 (443)
Q Consensus 188 i~~~~G~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 267 (443)
+..|.|+|+.|...++++.+.++++++++++++++++.++++++.++.++..++++.+.++++....++..+....+.++
T Consensus 419 i~~~~g~~~~~~~~~~~~~~~~~~~~e~~~k~~~~l~~~i~~~~~~a~~~~~~~s~~k~l~~~~~~~~~~~~~~~~~~~~ 498 (718)
T PLN03073 419 LVTYKGDYDTFERTREEQLKNQQKAFESNERSRSHMQAFIDKFRYNAKRASLVQSRIKALDRLGHVDAVVNDPDYKFEFP 498 (718)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHhhcchHHHHHhhhhccccCCCceeecC
Confidence 99999999999999988888888999999999999999998877766666667777776766543222211122233343
Q ss_pred CCC-CCCCCeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCceEEEEec
Q psy208 268 DTE-LLSPPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFS 346 (443)
Q Consensus 268 ~~~-~~~~~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ig~~~ 346 (443)
... ..+.++|+++||+++|++++++|+|+||+|.+|++++|+||||||||||||+|+|+++|++|+|.+..+..+||++
T Consensus 499 ~~~~~~~~~~L~~~~ls~~y~~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~~~igyv~ 578 (718)
T PLN03073 499 TPDDRPGPPIISFSDASFGYPGGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAKVRMAVFS 578 (718)
T ss_pred CCccCCCCceEEEEeeEEEeCCCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCceeEEEEe
Confidence 321 2345789999999999645579999999999999999999999999999999999999999999988778899999
Q ss_pred cCcccccccchhHHHHHHHhCCCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCC
Q psy208 347 QHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHL 426 (443)
Q Consensus 347 Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~L 426 (443)
|++...+....+....+...++....+.++.+|+.+|+..+..++++.+|||||||||+||++++.+|++||||||||||
T Consensus 579 Q~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~L 658 (718)
T PLN03073 579 QHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHL 658 (718)
T ss_pred ccccccCCcchhHHHHHHHhcCCCCHHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCC
Confidence 98643333332322222222334456778899999999766678999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHccc
Q psy208 427 DIETIEALGKAINKY 441 (443)
Q Consensus 427 D~~s~~~l~~~L~~~ 441 (443)
|+.+++.+.+.|.+|
T Consensus 659 D~~s~~~l~~~L~~~ 673 (718)
T PLN03073 659 DLDAVEALIQGLVLF 673 (718)
T ss_pred CHHHHHHHHHHHHHc
Confidence 999999999999875
No 5
>KOG0066|consensus
Probab=100.00 E-value=6.1e-68 Score=522.68 Aligned_cols=416 Identities=43% Similarity=0.694 Sum_probs=352.8
Q ss_pred HHccccccCCCC--------CcceEEecCCceEEEEecccCCCCchHHHHHHhccHHHHHHHHHHHHHHHHHhCCCCChh
Q psy208 24 ALTLHLHLEGGM--------VSGQLRIPSHISVLHVEQEVVGDDTPAIDSVLECDTKRQNLLNREKTITQAINNGTADAN 95 (443)
Q Consensus 24 ~~~~~~~~~~~~--------~~G~i~~~~~~~i~~l~Q~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~ 95 (443)
---|.+.|+|-. ....+.+|+++-+.|.+|++..++++.++.|+.++..+.+++.+..+|...+..+. ..
T Consensus 291 RRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEvvad~t~Ai~tvl~aD~kRl~lLeee~~L~~q~e~Gd--~t 368 (807)
T KOG0066|consen 291 RRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEVVADSTSAIDTVLKADKKRLALLEEEAKLMSQIEEGD--TT 368 (807)
T ss_pred ceecccCCCCCchHHHHHHHHhhhccCCCCCceEeeeeeeeecCcHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCc--hH
Confidence 334566777631 23456789999999999999888899999999999999999999999998887653 34
Q ss_pred hHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------HHH
Q psy208 96 MSTELTQVFAELEAIEADKAPARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAI 149 (443)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i 149 (443)
..+++.++++++.+++++.+++|++++|.||||+.++++||...+|||||+ .++
T Consensus 369 aaErl~~v~~ELraiGA~sAEarARRILAGLGFskEMQ~rPt~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAV 448 (807)
T KOG0066|consen 369 AAERLKEVADELRAIGADSAEARARRILAGLGFSKEMQERPTTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAV 448 (807)
T ss_pred HHHHHHHHHHHHHHhccccchhHHHHHHhhcCCChhHhcCCccccCCceeeehhHHHHHhcCceeeeecCCcccccccee
Confidence 678999999999999999999999999999999999999999999999999 588
Q ss_pred HHHHHHhhhCCCeEEEEecCHHHHhccCCcEEEEeCCeeEEEcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy208 150 IWLENYLQNWPTTLLVVSHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAFDKIKTEKLKNQQREIEAQRMHREHVQKFIDT 229 (443)
Q Consensus 150 ~wL~~~L~~~~~tviiVSHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 229 (443)
.||-+||+.|+.|++|||||..|||.|||.||+|++.++.+|.|||+.|.....+..+.....|++|+++.+.++..-.-
T Consensus 449 IWLdNYLQgWkKTLLIVSHDQgFLD~VCtdIIHLD~qkLhyYrGNY~~FKKmY~Qk~~e~~K~yekQeK~LkelKa~GkS 528 (807)
T KOG0066|consen 449 IWLDNYLQGWKKTLLIVSHDQGFLDSVCTDIIHLDNQKLHYYRGNYTLFKKMYAQKMQEHEKNYEKQEKQLKELKAEGKS 528 (807)
T ss_pred eehhhHHhhhhheeEEEecccchHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 89999999999999999999999999999999999999999999999999998888888888999998877766532110
Q ss_pred HHHHHHHH-HHHHHHHHHHhcC----------CCCCCCccccccccccCCCCCCCCCeEEEeeeEEEeCCCCceeeeeeE
Q psy208 230 FRYNANRA-SSVQSKIKQLERL----------PELKPIEKEVEVVLKFPDTELLSPPILQLSEVNFEYVPGKPILTNVCL 298 (443)
Q Consensus 230 ~~~~~~~~-~~~~~~~~~l~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~~il~~vsl 298 (443)
-+...... .+...+++.-.+- .++...+++..++|.||.++....|+|-+.+|+|.|++.+++|..++|
T Consensus 529 ~KqAEkq~Ke~ltrKq~K~~~Knq~dded~gapELL~RpKEY~VkF~FPep~~L~PPvLGlH~VtFgy~gqkpLFkkldF 608 (807)
T KOG0066|consen 529 AKQAEKQVKEQLTRKQKKGGKKNQNDDEDAGAPELLQRPKEYSVKFQFPEPTKLNPPVLGLHDVTFGYPGQKPLFKKLDF 608 (807)
T ss_pred hHHHHHHHHHHHHHHHHhccccccCccccccCHHHHhCchheEEEEecCCCCCCCCCeeecccccccCCCCCchhhcccc
Confidence 00000000 0001111100000 011123445678899998888888999999999999888899999999
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCceEEEEeccCcccccccchhHHHHHHHhCCCCCHHHHHHH
Q psy208 299 GATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQ 378 (443)
Q Consensus 299 ~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ig~~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (443)
-|.-..+||||||||.||||||++|.|.+.|..|+..-+.+.+||++.|+....+....++.+++...|. ...++++..
T Consensus 609 GiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnhrL~iG~FdQh~~E~L~~Eetp~EyLqr~FN-lpyq~ARK~ 687 (807)
T KOG0066|consen 609 GIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNHRLRIGWFDQHANEALNGEETPVEYLQRKFN-LPYQEARKQ 687 (807)
T ss_pred cccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhccceeeeechhhhhHHhhccccCHHHHHHHhcC-CChHHHHHH
Confidence 9999999999999999999999999999999999999888999999999988888888999999987663 467889999
Q ss_pred HhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHcccc
Q psy208 379 LGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKYT 442 (443)
Q Consensus 379 L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~~ 442 (443)
|+.||+......-.+..||||||.||+||-+.+..|+|||||||||+||++++.+|.++|++|.
T Consensus 688 LG~fGL~sHAHTikikdLSGGQKaRValaeLal~~PDvlILDEPTNNLDIESIDALaEAIney~ 751 (807)
T KOG0066|consen 688 LGTFGLASHAHTIKIKDLSGGQKARVALAELALGGPDVLILDEPTNNLDIESIDALAEAINEYN 751 (807)
T ss_pred hhhhhhhhccceEeeeecCCcchHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhcc
Confidence 9999997666566889999999999999999999999999999999999999999999999985
No 6
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=1.3e-65 Score=556.54 Aligned_cols=427 Identities=25% Similarity=0.427 Sum_probs=337.4
Q ss_pred hhhhhhhhcchHHHHHHHcccccc---------C------------C--CCCcceEEecCCceEEEEecccCCC-CchHH
Q psy208 8 TVSNSIFCFSSEFYCKALTLHLHL---------E------------G--GMVSGQLRIPSHISVLHVEQEVVGD-DTPAI 63 (443)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~---------~------------~--~~~~G~i~~~~~~~i~~l~Q~~~~~-~~~~~ 63 (443)
++.|+++.|+...+|+.+++.+.+ + | .+++|+|.+.++.+++|++|.+... ..++.
T Consensus 5 ~i~~ls~~~~~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~~~~~l~q~~~~~~~~~v~ 84 (635)
T PRK11147 5 SIHGAWLSFSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLIVARLQQDPPRNVEGTVY 84 (635)
T ss_pred EEeeEEEEeCCceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCCEEEEeccCCCCCCCCCHH
Confidence 467888888887788888888877 1 2 2588999998888899999976433 35667
Q ss_pred HHHHhccHHHHHHHHHHHHHHHHHhCCCCChhhHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCCChhhhhccCCCCChH
Q psy208 64 DSVLECDTKRQNLLNREKTITQAINNGTADANMSTELTQVFAELEAIEADKAPARASVILAGLGFTPEMQKRATKHFSGG 143 (443)
Q Consensus 64 ~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~~~L~~lgl~~~~~~~~~~~LSGG 143 (443)
+.+..+...+......+..+...+... ...+....+..+.+.+...++|..+.++..+|.++||.. ++++.+||||
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~---~~~~~~LSgG 160 (635)
T PRK11147 85 DFVAEGIEEQAEYLKRYHDISHLVETD-PSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLDP---DAALSSLSGG 160 (635)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHhccC-chHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCCC---CCchhhcCHH
Confidence 666554433444444444454444221 111233445555556666778888999999999999972 7899999999
Q ss_pred HHH--------------------------HHHHHHHHHhhhCCCeEEEEecCHHHHhccCCcEEEEeCCeeEEEcCChhH
Q psy208 144 WRK--------------------------MAIIWLENYLQNWPTTLLVVSHDRHFLDSVPTDIFHLHSQRIDTYRGNYEA 197 (443)
Q Consensus 144 qr~--------------------------~~i~wL~~~L~~~~~tviiVSHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~ 197 (443)
||+ .++.||+++|+++++|||+||||++|++.+||+|++|++|+++.|.|||+.
T Consensus 161 ekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~~tvlivsHd~~~l~~~~d~i~~L~~G~i~~~~g~~~~ 240 (635)
T PRK11147 161 WLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQGSIIFISHDRSFIRNMATRIVDLDRGKLVSYPGNYDQ 240 (635)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhcCeEEEEECCEEEEecCCHHH
Confidence 999 799999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCCCCccccccccccCCCCCCCCC
Q psy208 198 FDKIKTEKLKNQQREIEAQRMHREHVQKFIDTFRYNANRASSVQSKIKQLERLP--ELKPIEKEVEVVLKFPDTELLSPP 275 (443)
Q Consensus 198 y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 275 (443)
|..+++++.+.+...++++++++++++.++++ +..+.+.++ +++.++++++. ...+........+.|+.....+++
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~a~~~~~-~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (635)
T PRK11147 241 YLLEKEEALRVEELQNAEFDRKLAQEEVWIRQ-GIKARRTRN-EGRVRALKALRRERSERREVMGTAKMQVEEASRSGKI 318 (635)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhhhhhH-HHHHHHHHHhhhhhccccccCCceeEEeCCCCCCCCc
Confidence 99999888877778888888999898888876 333333333 66777776653 121111112334555554455678
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCceEEEEeccCccccccc
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDM 355 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ig~~~Q~~~~~l~~ 355 (443)
+|+++||+++|+ ++++|+|+||+|.+|+++||+||||||||||||+|+|+++|++|+|.++.+..+||++|++ ..+.+
T Consensus 319 ~l~~~~l~~~~~-~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~y~~q~~-~~l~~ 396 (635)
T PRK11147 319 VFEMENVNYQID-GKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHCGTKLEVAYFDQHR-AELDP 396 (635)
T ss_pred eEEEeeeEEEEC-CeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCCcEEEEEeCcc-cccCC
Confidence 999999999996 5679999999999999999999999999999999999999999999987677899999975 34566
Q ss_pred chhHHHHHHHhCCC----CCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCCHHHH
Q psy208 356 NLRCVQLLEAAFPG----KPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETI 431 (443)
Q Consensus 356 ~~~~~~~~~~~~~~----~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD~~s~ 431 (443)
..++.+++...... .....+..+|+.|++..+..++++++|||||||||+||++++.+|++|||||||||||+.++
T Consensus 397 ~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLlLDEPt~~LD~~~~ 476 (635)
T PRK11147 397 EKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETL 476 (635)
T ss_pred CCCHHHHHHhhcccccccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHH
Confidence 67787777543211 11456788999999976678899999999999999999999999999999999999999999
Q ss_pred HHHHHHHcccc
Q psy208 432 EALGKAINKYT 442 (443)
Q Consensus 432 ~~l~~~L~~~~ 442 (443)
+.|.++|.+|.
T Consensus 477 ~~l~~~l~~~~ 487 (635)
T PRK11147 477 ELLEELLDSYQ 487 (635)
T ss_pred HHHHHHHHhCC
Confidence 99999998863
No 7
>KOG0062|consensus
Probab=100.00 E-value=7.9e-67 Score=525.50 Aligned_cols=322 Identities=56% Similarity=0.886 Sum_probs=306.0
Q ss_pred HHHHhCCCChhhhhccCCCCChHHHH--------------------------HHHHHHHHHhhhCCCeEEEEecCHHHHh
Q psy208 121 VILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAIIWLENYLQNWPTTLLVVSHDRHFLD 174 (443)
Q Consensus 121 ~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L~~~~~tviiVSHDr~fLd 174 (443)
.+|.+|||+++++.+|+.+||||||| .+|.||++||+.|+.|+|+|||||.|||
T Consensus 180 ~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~~~T~liVSHDr~FLn 259 (582)
T KOG0062|consen 180 KILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTWKITSLIVSHDRNFLN 259 (582)
T ss_pred HHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEeecCCcccchhHHHHHHHHHHhhCCceEEEEeccHHHHH
Confidence 39999999999999999999999999 7999999999999999999999999999
Q ss_pred ccCCcEEEEeCCeeEEEcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q psy208 175 SVPTDIFHLHSQRIDTYRGNYEAFDKIKTEKLKNQQREIEAQRMHREHVQKFIDTFRYNANRASSVQSKIKQLERLPELK 254 (443)
Q Consensus 175 ~v~~~i~~l~~g~i~~~~G~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~ 254 (443)
.|||.||++++.++..|.|||+.|.+.+.++...++++|+.+.+.+++++.++.+|++++++++.++||++.++++....
T Consensus 260 ~V~tdIIH~~~~kL~~YkGN~~~Fvk~k~E~~~n~qrefe~q~~~R~h~q~fid~FrYna~ra~svqSRIk~L~kl~~lk 339 (582)
T KOG0062|consen 260 TVCTDIIHLENLKLDYYKGNYSQFVKTKPEAKKNQQREFEVQMKYRAHLQVFIDKFRYNAARASSVQSRIKMLGKLPALK 339 (582)
T ss_pred HHHHHHHHHhhhhhhhhcCcHHHHHHhhHHhhhhhhhhcchHHHHHHHHHHHHHHhccCcccchhHHHHHHHhccCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred CCccccccccccCCC-CCCCCCeEEEeeeEEEeCCCC-ceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCc
Q psy208 255 PIEKEVEVVLKFPDT-ELLSPPILQLSEVNFEYVPGK-PILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAG 332 (443)
Q Consensus 255 ~~~~~~~~~~~~~~~-~~~~~~~l~~~~l~~~y~~~~-~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G 332 (443)
++..+....+.||.+ .....|+|++.+|+|.|.++. +++.++++.++.-++++++|+||+||||++|++.|...|..|
T Consensus 340 ~~~~~~~~~~~fP~~~e~~~~p~l~i~~V~f~y~p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rg 419 (582)
T KOG0062|consen 340 STLIEVLIGFLFPTEGEVLSPPNLRISYVAFEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRG 419 (582)
T ss_pred ccceecccceecCCCCCcCCCCeeEEEeeeccCCCcchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccc
Confidence 777777777888873 345678999999999998766 799999999999999999999999999999999999999999
Q ss_pred eEEEcCceEEEEeccCcccccccchhHHHHHHHhCCCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhcc
Q psy208 333 TRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMA 412 (443)
Q Consensus 333 ~i~~~~~~~ig~~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~ 412 (443)
.+.++++.+++|+.|++.+.++...+.++.+...+++..+++++..++.||++++.+.+++..||||||-||+||.+...
T Consensus 420 i~~~~~r~ri~~f~Qhhvd~l~~~v~~vd~~~~~~pG~~~ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrvafA~~~~~ 499 (582)
T KOG0062|consen 420 IVGRHPRLRIKYFAQHHVDFLDKNVNAVDFMEKSFPGKTEEEIRRHLGSFGLSGELALQSIASLSGGQKSRVAFAACTWN 499 (582)
T ss_pred eeeecccceecchhHhhhhHHHHHhHHHHHHHHhCCCCCHHHHHHHHHhcCCCchhhhccccccCCcchhHHHHHHHhcC
Confidence 99999999999999999888888889999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHcccc
Q psy208 413 APNFLVLDEPTNHLDIETIEALGKAINKYT 442 (443)
Q Consensus 413 ~p~lLiLDEPTn~LD~~s~~~l~~~L~~~~ 442 (443)
+|++|||||||||||.++..+|..+|++|.
T Consensus 500 ~PhlLVLDEPTNhLD~dsl~AL~~Al~~F~ 529 (582)
T KOG0062|consen 500 NPHLLVLDEPTNHLDRDSLGALAKALKNFN 529 (582)
T ss_pred CCcEEEecCCCccccHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999985
No 8
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=3.7e-61 Score=514.74 Aligned_cols=435 Identities=25% Similarity=0.384 Sum_probs=328.0
Q ss_pred Ccccchhhhhhhhhhcc-hHHHHHHHcccccc---------C------------C--CCCcceEEecCCceEEEEecccC
Q psy208 1 MMSQRVNTVSNSIFCFS-SEFYCKALTLHLHL---------E------------G--GMVSGQLRIPSHISVLHVEQEVV 56 (443)
Q Consensus 1 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---------~------------~--~~~~G~i~~~~~~~i~~l~Q~~~ 56 (443)
||++-.-++.|+++.|+ ...+|+.+++.+.+ + | .+++|+|.+..+.++||++|++.
T Consensus 1 ~~~~~~l~i~~l~~~y~~~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~ 80 (556)
T PRK11819 1 MMAQYIYTMNRVSKVVPPKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPGIKVGYLPQEPQ 80 (556)
T ss_pred CcccEEEEEeeEEEEeCCCCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCC
Confidence 78887888999999998 78889999888887 2 2 25899999887778999999986
Q ss_pred C-CCchHHHHHHhccHHHHHHHHHHHHHHHHHhCCC-CChhhHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCCChhhhh
Q psy208 57 G-DDTPAIDSVLECDTKRQNLLNREKTITQAINNGT-ADANMSTELTQVFAELEAIEADKAPARASVILAGLGFTPEMQK 134 (443)
Q Consensus 57 ~-~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~rv~~~L~~lgl~~~~~~ 134 (443)
. +..|+.+.+..+......+......+........ .....+.++.++.+.++..+.|+.+.++..+|..+|++. .+
T Consensus 81 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~--~~ 158 (556)
T PRK11819 81 LDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPP--WD 158 (556)
T ss_pred CCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCCc--cc
Confidence 5 3457777665332211111111111111111100 112344567788888888899999999999999999963 58
Q ss_pred ccCCCCChHHHH--------------------------HHHHHHHHHhhhCCCeEEEEecCHHHHhccCCcEEEEeCCee
Q psy208 135 RATKHFSGGWRK--------------------------MAIIWLENYLQNWPTTLLVVSHDRHFLDSVPTDIFHLHSQRI 188 (443)
Q Consensus 135 ~~~~~LSGGqr~--------------------------~~i~wL~~~L~~~~~tviiVSHDr~fLd~v~~~i~~l~~g~i 188 (443)
+++.+||||||+ .++.||.++|+++++|||+||||++++..+||+|++|++|++
T Consensus 159 ~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~~tviiisHd~~~~~~~~d~i~~l~~g~i 238 (556)
T PRK11819 159 AKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYPGTVVAVTHDRYFLDNVAGWILELDRGRG 238 (556)
T ss_pred CchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcCeEEEEeCCEE
Confidence 999999999999 799999999999999999999999999999999999999999
Q ss_pred EEEcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccccccccCC
Q psy208 189 DTYRGNYEAFDKIKTEKLKNQQREIEAQRMHREHVQKFIDTFRYNANRASSVQSKIKQLERLPELKPIEKEVEVVLKFPD 268 (443)
Q Consensus 189 ~~~~G~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 268 (443)
..|.|+|+.|.+.++...+.+.+.++++++++++++.++++.. .+ +....+++.+.++++....+...+....+.++.
T Consensus 239 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (556)
T PRK11819 239 IPWEGNYSSWLEQKAKRLAQEEKQEAARQKALKRELEWVRQSP-KA-RQAKSKARLARYEELLSEEYQKRNETNEIFIPP 316 (556)
T ss_pred EEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hh-hHHHHHHHHHHHHHhhcccccccCCCceeecCC
Confidence 8899999999988876666666667777776766666665421 11 112233344444443221111111112222333
Q ss_pred CCCCCCCeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCceEEEEeccC
Q psy208 269 TELLSPPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQH 348 (443)
Q Consensus 269 ~~~~~~~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ig~~~Q~ 348 (443)
.+...+++|+++||++.|+ ++++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.++....+||++|+
T Consensus 317 ~~~~~~~~l~~~~l~~~~~-~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~q~ 395 (556)
T PRK11819 317 GPRLGDKVIEAENLSKSFG-DRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGETVKLAYVDQS 395 (556)
T ss_pred CCCCCCeEEEEEeEEEEEC-CeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEeCc
Confidence 2223457899999999996 467999999999999999999999999999999999999999999998766789999998
Q ss_pred cccccccchhHHHHHHHhCC----CCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCC
Q psy208 349 HVDQLDMNLRCVQLLEAAFP----GKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTN 424 (443)
Q Consensus 349 ~~~~l~~~~~~~~~~~~~~~----~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn 424 (443)
+ ..+....++.+++..... .......+.++..+++.....++++++|||||||||+||++++.+|++||||||||
T Consensus 396 ~-~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~ 474 (556)
T PRK11819 396 R-DALDPNKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTN 474 (556)
T ss_pred h-hhcCCCCCHHHHHHhhcccccccccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCC
Confidence 5 234555677777643211 11234456789999996556789999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHccc
Q psy208 425 HLDIETIEALGKAINKY 441 (443)
Q Consensus 425 ~LD~~s~~~l~~~L~~~ 441 (443)
|||+.+++.|.+.|.++
T Consensus 475 ~LD~~~~~~l~~~l~~~ 491 (556)
T PRK11819 475 DLDVETLRALEEALLEF 491 (556)
T ss_pred CCCHHHHHHHHHHHHhC
Confidence 99999999999999876
No 9
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9e-59 Score=494.04 Aligned_cols=429 Identities=26% Similarity=0.453 Sum_probs=315.6
Q ss_pred hhhhhhhcchHHHHHHHcccccc---------C------------C--CCCcceEEecCCceEEEEecccCC-CCchHHH
Q psy208 9 VSNSIFCFSSEFYCKALTLHLHL---------E------------G--GMVSGQLRIPSHISVLHVEQEVVG-DDTPAID 64 (443)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~---------~------------~--~~~~G~i~~~~~~~i~~l~Q~~~~-~~~~~~~ 64 (443)
+.|+++.|+...+|+.+++.+.+ + | .+++|+|.+....++||++|++.. ...++.+
T Consensus 4 i~~ls~~~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~tv~e 83 (530)
T PRK15064 4 TANITMQFGAKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPNERLGKLRQDQFAFEEFTVLD 83 (530)
T ss_pred EEEEEEEeCCcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCcCCCCcHHH
Confidence 56677777766677777776666 1 2 247799998766689999999754 4567776
Q ss_pred HHHhccHHHHHHHHHHHHHHHHHhCCCCChhhHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCCChhhhhccCCCCChHH
Q psy208 65 SVLECDTKRQNLLNREKTITQAINNGTADANMSTELTQVFAELEAIEADKAPARASVILAGLGFTPEMQKRATKHFSGGW 144 (443)
Q Consensus 65 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~~~L~~lgl~~~~~~~~~~~LSGGq 144 (443)
.+................+.. .. .........+.+..+.+....+|+.+.++..+|..+|++....++++.+|||||
T Consensus 84 ~l~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGq 160 (530)
T PRK15064 84 TVIMGHTELWEVKQERDRIYA-LP--EMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLMSEVAPGW 160 (530)
T ss_pred HHHHhhHHHHHHHHHHHHHhc-cc--ccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCchhhcCHHH
Confidence 665332111111111111100 00 000011234566666666777788888999999999998544467899999999
Q ss_pred HH--------------------------HHHHHHHHHhhhCCCeEEEEecCHHHHhccCCcEEEEeCCeeEEEcCChhHH
Q psy208 145 RK--------------------------MAIIWLENYLQNWPTTLLVVSHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAF 198 (443)
Q Consensus 145 r~--------------------------~~i~wL~~~L~~~~~tviiVSHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y 198 (443)
|+ .++.||.++|+++++|||+||||++++..+||+|++|++|++..|.|+|++|
T Consensus 161 ~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~ 240 (530)
T PRK15064 161 KLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNERNSTMIIISHDRHFLNSVCTHMADLDYGELRVYPGNYDEY 240 (530)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcceEEEEeCCEEEEecCCHHHH
Confidence 99 7899999999888899999999999999999999999999998899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC-CCccccccccccCCCCCCCCCeE
Q psy208 199 DKIKTEKLKNQQREIEAQRMHREHVQKFIDTFRYNANRASSVQSKIKQLERLPELK-PIEKEVEVVLKFPDTELLSPPIL 277 (443)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l 277 (443)
..+++...+.+.++++++++++++++.++.+....+.+...++++.+.++++.... +........+.++.....++++|
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 320 (530)
T PRK15064 241 MTAATQARERLLADNAKKKAQIAELQSFVSRFSANASKAKQATSRAKQIDKIKLEEVKPSSRQNPFIRFEQDKKLHRNAL 320 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhhccccccCCccccCceeeCCCCCCCCCceE
Confidence 98888766666777788888887777666543322223334444555555432111 00000011112232222345789
Q ss_pred EEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCceEEEEeccCcccccccch
Q psy208 278 QLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNL 357 (443)
Q Consensus 278 ~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ig~~~Q~~~~~l~~~~ 357 (443)
+++|++++|+ ++.+|+|+||+|.+|++++|+||||||||||+|+|+|+++|++|+|.+.+...+||++|++...+....
T Consensus 321 ~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~ 399 (530)
T PRK15064 321 EVENLTKGFD-NGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENANIGYYAQDHAYDFENDL 399 (530)
T ss_pred EEEeeEEeeC-CceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEcccccccCCCCC
Confidence 9999999996 467999999999999999999999999999999999999999999999887889999998633344445
Q ss_pred hHHHHHHHhC-CCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHH
Q psy208 358 RCVQLLEAAF-PGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGK 436 (443)
Q Consensus 358 ~~~~~~~~~~-~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~ 436 (443)
++.+++.... .....+.+..+|..+++..+..++++.+|||||||||+||++++.+|++|||||||||||+.+++.|.+
T Consensus 400 t~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~ 479 (530)
T PRK15064 400 TLFDWMSQWRQEGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNM 479 (530)
T ss_pred cHHHHHHHhccCCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHH
Confidence 6666654321 122355678899999996556789999999999999999999999999999999999999999999999
Q ss_pred HHccc
Q psy208 437 AINKY 441 (443)
Q Consensus 437 ~L~~~ 441 (443)
.|.++
T Consensus 480 ~l~~~ 484 (530)
T PRK15064 480 ALEKY 484 (530)
T ss_pred HHHHC
Confidence 99876
No 10
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=2.1e-58 Score=493.22 Aligned_cols=428 Identities=25% Similarity=0.376 Sum_probs=312.2
Q ss_pred hhhhhhhhcc-hHHHHHHHcccccc---------C------------C--CCCcceEEecCCceEEEEecccCC-CCchH
Q psy208 8 TVSNSIFCFS-SEFYCKALTLHLHL---------E------------G--GMVSGQLRIPSHISVLHVEQEVVG-DDTPA 62 (443)
Q Consensus 8 ~~~~~~~~~~-~~~~~~~~~~~~~~---------~------------~--~~~~G~i~~~~~~~i~~l~Q~~~~-~~~~~ 62 (443)
.+.|+++.|+ ...+|+.+++.+.+ + | .+++|+|.+..+.+|||++|++.. +..|+
T Consensus 6 ~~~nls~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~~~~tv 85 (552)
T TIGR03719 6 TMNRVSKVVPPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGIKVGYLPQEPQLDPTKTV 85 (552)
T ss_pred EEeeEEEecCCCCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCCCCCCcH
Confidence 4667777776 56677777776666 1 1 257799998766789999999864 44577
Q ss_pred HHHHHhccHHHHHHHHHHHHHHHHHhCCCCC-hhhHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCCChhhhhccCCCCC
Q psy208 63 IDSVLECDTKRQNLLNREKTITQAINNGTAD-ANMSTELTQVFAELEAIEADKAPARASVILAGLGFTPEMQKRATKHFS 141 (443)
Q Consensus 63 ~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~rv~~~L~~lgl~~~~~~~~~~~LS 141 (443)
.+.+..+.........++..+...+.....+ ...+..+.++.+.++..+.|+++.++..++..+|++. .++++.+||
T Consensus 86 ~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~LS 163 (552)
T TIGR03719 86 RENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPP--WDADVTKLS 163 (552)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCCc--ccCchhhcC
Confidence 7766533221111111121111111110000 1123356677777888888999999999999999963 578999999
Q ss_pred hHHHH--------------------------HHHHHHHHHhhhCCCeEEEEecCHHHHhccCCcEEEEeCCeeEEEcCCh
Q psy208 142 GGWRK--------------------------MAIIWLENYLQNWPTTLLVVSHDRHFLDSVPTDIFHLHSQRIDTYRGNY 195 (443)
Q Consensus 142 GGqr~--------------------------~~i~wL~~~L~~~~~tviiVSHDr~fLd~v~~~i~~l~~g~i~~~~G~y 195 (443)
||||+ .++.||.++|+++++|||+||||+++++.+||+|++|++|++..|.|+|
T Consensus 164 gGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~~~tvIiisHd~~~~~~~~d~v~~l~~g~i~~~~g~~ 243 (552)
T TIGR03719 164 GGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEYPGTVVAVTHDRYFLDNVAGWILELDRGRGIPWEGNY 243 (552)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcCeEEEEECCEEEEecCCH
Confidence 99999 7889999999999899999999999999999999999999998899999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccccccccCCCCCCCCC
Q psy208 196 EAFDKIKTEKLKNQQREIEAQRMHREHVQKFIDTFRYNANRASSVQSKIKQLERLPELKPIEKEVEVVLKFPDTELLSPP 275 (443)
Q Consensus 196 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (443)
+.|.++++...+.+.+.+++.++++.++..++++... .. ....+++.+.++++....+...+....+.++.....+++
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (552)
T TIGR03719 244 SSWLEQKEKRLEQEEKEESARQKALKRELEWVRSSPK-AR-QAKSKARLARYEELLSQEFQKRNETAEIYIPPGPRLGDK 321 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hH-HHHHHHHHHHHHhhhhhcccccCCCceeecCCCCCCCCe
Confidence 9999887766666666666666666666655543111 11 112223333333322211111111112223322223467
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCceEEEEeccCccccccc
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDM 355 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ig~~~Q~~~~~l~~ 355 (443)
+|+++|++++|+ ++++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.++....+||++|++. .+..
T Consensus 322 ~l~~~~l~~~~~-~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~~~~i~~v~q~~~-~~~~ 399 (552)
T TIGR03719 322 VIEAENLSKGFG-DKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGETVKLAYVDQSRD-ALDP 399 (552)
T ss_pred EEEEeeEEEEEC-CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECCceEEEEEeCCcc-ccCC
Confidence 899999999996 46799999999999999999999999999999999999999999999876668999999852 2445
Q ss_pred chhHHHHHHHhCC--C--CCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCCHHHH
Q psy208 356 NLRCVQLLEAAFP--G--KPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETI 431 (443)
Q Consensus 356 ~~~~~~~~~~~~~--~--~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD~~s~ 431 (443)
..++.+++..... . ........++..+++.....++++.+|||||||||+||++++.+|++|||||||||||+.++
T Consensus 400 ~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~~ 479 (552)
T TIGR03719 400 NKTVWEEISGGLDIIQLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETL 479 (552)
T ss_pred CCcHHHHHHhhccccccCcchHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Confidence 5677777653221 1 11334567899999965457899999999999999999999999999999999999999999
Q ss_pred HHHHHHHccc
Q psy208 432 EALGKAINKY 441 (443)
Q Consensus 432 ~~l~~~L~~~ 441 (443)
+.|.+.|.++
T Consensus 480 ~~l~~~l~~~ 489 (552)
T TIGR03719 480 RALEEALLEF 489 (552)
T ss_pred HHHHHHHHHC
Confidence 9999999876
No 11
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=4.9e-48 Score=410.76 Aligned_cols=269 Identities=24% Similarity=0.340 Sum_probs=210.6
Q ss_pred CHHHHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------HHHHHHHHHhh----hCCCeE
Q psy208 114 KAPARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAIIWLENYLQ----NWPTTL 163 (443)
Q Consensus 114 ~~~~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L~----~~~~tv 163 (443)
+...++.++|..+|+++ ..++++.+||||||| .+..|+.+.|+ +++.||
T Consensus 144 ~~~~~~~~~l~~~gl~~-~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tv 222 (520)
T TIGR03269 144 EAVGRAVDLIEMVQLSH-RITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISM 222 (520)
T ss_pred HHHHHHHHHHHHcCChh-hhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEE
Confidence 34568999999999975 468999999999999 67778766553 357899
Q ss_pred EEEecCHHHHhccCCcEEEEeCCeeEEEcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy208 164 LVVSHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAFDKIKTEKLKNQQREIEAQRMHREHVQKFIDTFRYNANRASSVQSK 243 (443)
Q Consensus 164 iiVSHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 243 (443)
|+||||++++..+||+|+.|++|++. +.|+|+++.... .. . ...
T Consensus 223 iivtHd~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~~~~-----------~~------~----~~~-------------- 266 (520)
T TIGR03269 223 VLTSHWPEVIEDLSDKAIWLENGEIK-EEGTPDEVVAVF-----------ME------G----VSE-------------- 266 (520)
T ss_pred EEEeCCHHHHHHhcCEEEEEeCCEEe-eecCHHHHHHHH-----------Hh------h----chh--------------
Confidence 99999999999999999999999986 478887763210 00 0 000
Q ss_pred HHHHhcCCCCCCCccccccccccCCCCCCCCCeEEEeeeEEEeCC----CCceeeeeeEEEeCCCEEEEECCCCCcHHHH
Q psy208 244 IKQLERLPELKPIEKEVEVVLKFPDTELLSPPILQLSEVNFEYVP----GKPILTNVCLGATLESRICIVGDNGAGKTTL 319 (443)
Q Consensus 244 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~----~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTL 319 (443)
..+ + . ....+.++|+++||+++|++ .+++|+|+||+|.+|++++|+||||||||||
T Consensus 267 ---~~~-----~----~--------~~~~~~~~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTL 326 (520)
T TIGR03269 267 ---VEK-----E----C--------EVEVGEPIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTL 326 (520)
T ss_pred ---hcc-----c----c--------ccCCCCceEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHH
Confidence 000 0 0 00012458999999999952 2579999999999999999999999999999
Q ss_pred HHHHHcCCCCCCceEEEc-C-----------------ceEEEEeccCcccccccchhHHHHHHHhC----CCC-CHHHHH
Q psy208 320 LKIIMGIISPTAGTRTVH-R-----------------NLKFGYFSQHHVDQLDMNLRCVQLLEAAF----PGK-PQEEYR 376 (443)
Q Consensus 320 lk~l~G~~~p~~G~i~~~-~-----------------~~~ig~~~Q~~~~~l~~~~~~~~~~~~~~----~~~-~~~~~~ 376 (443)
+|+|+|+++|++|+|.+. + ...++|++|++. +....++.+++.... +.. ....+.
T Consensus 327 l~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~~--l~~~~tv~e~l~~~~~~~~~~~~~~~~~~ 404 (520)
T TIGR03269 327 SKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYD--LYPHRTVLDNLTEAIGLELPDELARMKAV 404 (520)
T ss_pred HHHHhCCCCCCCeEEEEecCCccccccccchhhHHHHhhhEEEEccCcc--cCCCCcHHHHHHHHHHcCCCHHHHHHHHH
Confidence 999999999999999883 2 124899999853 444567777664311 111 123567
Q ss_pred HHHhcCCCCh----hhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 377 RQLGGFGVSG----DLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 377 ~~L~~~gl~~----~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
.+++.+++.. +..++++.+|||||||||+||+||+.+|++|||||||++||+.+++.+.+.|.++
T Consensus 405 ~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l 473 (520)
T TIGR03269 405 ITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKA 473 (520)
T ss_pred HHHHhCCCCCccchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 7899999964 2568999999999999999999999999999999999999999999999999754
No 12
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-47 Score=414.02 Aligned_cols=305 Identities=16% Similarity=0.222 Sum_probs=214.8
Q ss_pred HHHHHHHHHHhCCCCh--hhhhccCCCCChHHHH-----------------------------HHHHHHHHHhh-hCCCe
Q psy208 115 APARASVILAGLGFTP--EMQKRATKHFSGGWRK-----------------------------MAIIWLENYLQ-NWPTT 162 (443)
Q Consensus 115 ~~~rv~~~L~~lgl~~--~~~~~~~~~LSGGqr~-----------------------------~~i~wL~~~L~-~~~~t 162 (443)
+..|+.++|+.+|+++ ..+++++++||||||| ..+.++...|. +++.|
T Consensus 142 ~~~~~~~~l~~~gL~~~~~~~~~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~t 221 (623)
T PRK10261 142 AMVEAKRMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMG 221 (623)
T ss_pred HHHHHHHHHHHCCCCChhhHHhCCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCE
Confidence 4468889999999963 3568999999999999 34556666664 45889
Q ss_pred EEEEecCHHHHhccCCcEEEEeCCeeEEEcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy208 163 LLVVSHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAFDKIKTEKLKNQQREIEAQRMHREHVQKFIDTFRYNANRASSVQS 242 (443)
Q Consensus 163 viiVSHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 242 (443)
||+||||.+++..+||+|++|++|++. ..|++.++..... ..+.+. +...+...... ..+.
T Consensus 222 vi~itHdl~~~~~~adri~vl~~G~i~-~~g~~~~~~~~~~-------~~~~~~------l~~~~~~~~~~-----~~~~ 282 (623)
T PRK10261 222 VIFITHDMGVVAEIADRVLVMYQGEAV-ETGSVEQIFHAPQ-------HPYTRA------LLAAVPQLGAM-----KGLD 282 (623)
T ss_pred EEEEcCCHHHHHHhCCEEEEeeCCeec-ccCCHHHhhcCCC-------Chhhhh------hhhccCccccc-----cccc
Confidence 999999999999999999999999997 4788877642110 001100 00000000000 0000
Q ss_pred HHHHHhcCCCCCCCccccccccccCCCCCCCCCeEEEeeeEEEeCC----------CCceeeeeeEEEeCCCEEEEECCC
Q psy208 243 KIKQLERLPELKPIEKEVEVVLKFPDTELLSPPILQLSEVNFEYVP----------GKPILTNVCLGATLESRICIVGDN 312 (443)
Q Consensus 243 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~----------~~~il~~vsl~i~~Ge~i~iiG~N 312 (443)
.......... .......+ ..++.....+.++|+++||++.|+. ...+|+|+||+|.+|++++|+|+|
T Consensus 283 ~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~n 359 (623)
T PRK10261 283 YPRRFPLISL-EHPAKQEP--PIEQDTVVDGEPILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGES 359 (623)
T ss_pred CCcccccccc-ccccccCc--ccccccccCCCceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCC
Confidence 0000000000 00000000 0000011123578999999999952 146999999999999999999999
Q ss_pred CCcHHHHHHHHHcCCCCCCceEEEcCc--------------eEEEEeccCcccccccchhHHHHHHHh--CCCC-----C
Q psy208 313 GAGKTTLLKIIMGIISPTAGTRTVHRN--------------LKFGYFSQHHVDQLDMNLRCVQLLEAA--FPGK-----P 371 (443)
Q Consensus 313 GsGKSTLlk~l~G~~~p~~G~i~~~~~--------------~~ig~~~Q~~~~~l~~~~~~~~~~~~~--~~~~-----~ 371 (443)
|||||||+|+|+|+++|++|+|.+.+. ..++|++|++...+.+..++.+++... .... .
T Consensus 360 GsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~ 439 (623)
T PRK10261 360 GSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAA 439 (623)
T ss_pred CCCHHHHHHHHHcCCCCCCcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHH
Confidence 999999999999999999999987541 258999998643455566776665421 1111 1
Q ss_pred HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 372 QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 372 ~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
...+.++|..+|+..+..++++++|||||||||+||+||+.+|+||||||||++||+.++..+.+.|.++
T Consensus 440 ~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l 509 (623)
T PRK10261 440 AARVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDL 509 (623)
T ss_pred HHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 2456788999999655678999999999999999999999999999999999999999999999999764
No 13
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=7.7e-47 Score=390.55 Aligned_cols=290 Identities=22% Similarity=0.360 Sum_probs=220.2
Q ss_pred cCCHHHHHHHHHHhCCCChhhh-hccCCCCChHHHH-----------------------------HHHH-HHHHHhhhCC
Q psy208 112 ADKAPARASVILAGLGFTPEMQ-KRATKHFSGGWRK-----------------------------MAII-WLENYLQNWP 160 (443)
Q Consensus 112 ~~~~~~rv~~~L~~lgl~~~~~-~~~~~~LSGGqr~-----------------------------~~i~-wL~~~L~~~~ 160 (443)
..++..|+.++|+.+|+++... ++.+++||||||| .-|. -|.+.-++.+
T Consensus 126 ~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g 205 (539)
T COG1123 126 RAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELG 205 (539)
T ss_pred HHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcC
Confidence 3456679999999999986544 4699999999999 2222 3333335789
Q ss_pred CeEEEEecCHHHHhccCCcEEEEeCCeeEEEcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy208 161 TTLLVVSHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAFDKIKTEKLKNQQREIEAQRMHREHVQKFIDTFRYNANRASSV 240 (443)
Q Consensus 161 ~tviiVSHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 240 (443)
.++|+||||...+.++||||++|++|+++.. |..++-.. +.++.|.+..
T Consensus 206 ~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE~-G~~~~i~~-------~p~hpYT~~L----------------------- 254 (539)
T COG1123 206 MAVLFITHDLGVVAELADRVVVMYKGEIVET-GPTEEILS-------NPQHPYTRGL----------------------- 254 (539)
T ss_pred cEEEEEcCCHHHHHHhcCeEEEEECCEEEEe-cCHHHHHh-------ccCCcccHHH-----------------------
Confidence 9999999999999999999999999999875 55443221 1111222110
Q ss_pred HHHHHHHhcCCCCCCCccccccccccCCCCCCCCCeEEEeeeEEEeCC------C----CceeeeeeEEEeCCCEEEEEC
Q psy208 241 QSKIKQLERLPELKPIEKEVEVVLKFPDTELLSPPILQLSEVNFEYVP------G----KPILTNVCLGATLESRICIVG 310 (443)
Q Consensus 241 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~------~----~~il~~vsl~i~~Ge~i~iiG 310 (443)
+...+....... ....... .....++++++||++.|.. . ..+++||||+|.+||++||||
T Consensus 255 ------l~a~p~~~~~~~-~~~~~~~---~~~~~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVG 324 (539)
T COG1123 255 ------LAAVPRLGDEKI-IRLPRRG---PLRAEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVG 324 (539)
T ss_pred ------HhhCCCcccccc-ccccccc---ccccCceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEEC
Confidence 000111000000 0000000 0115689999999999973 1 358999999999999999999
Q ss_pred CCCCcHHHHHHHHHcCCCCCCceEEEcCc-------------eEEEEeccCcccccccchhHHHHHHHhCC---CC----
Q psy208 311 DNGAGKTTLLKIIMGIISPTAGTRTVHRN-------------LKFGYFSQHHVDQLDMNLRCVQLLEAAFP---GK---- 370 (443)
Q Consensus 311 ~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-------------~~ig~~~Q~~~~~l~~~~~~~~~~~~~~~---~~---- 370 (443)
++|||||||.|+|+|+++|++|+|.+.+. ..+-+++|+|...+++..|+.+.+..... ..
T Consensus 325 eSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~ 404 (539)
T COG1123 325 ESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAE 404 (539)
T ss_pred CCCCCHHHHHHHHhCCCCCCCceEEEeCcccccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHH
Confidence 99999999999999999999999987542 35788999999899999998887754221 11
Q ss_pred CHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHcccc
Q psy208 371 PQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKYT 442 (443)
Q Consensus 371 ~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~~ 442 (443)
..+.+.++|..+|+..+..+++|++||||||||++|||||+.+|++||+||||+.||+..+..+.+.|.++.
T Consensus 405 ~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq 476 (539)
T COG1123 405 RRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQ 476 (539)
T ss_pred HHHHHHHHHHHcCCCHHHHhcCchhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHH
Confidence 123477889999999888999999999999999999999999999999999999999999999999998753
No 14
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=1.6e-46 Score=399.94 Aligned_cols=278 Identities=19% Similarity=0.308 Sum_probs=209.9
Q ss_pred HHHHHHHHHHhCCCCh--hhhhccCCCCChHHHH--------------------------HHHHHHHHHhhh----CCCe
Q psy208 115 APARASVILAGLGFTP--EMQKRATKHFSGGWRK--------------------------MAIIWLENYLQN----WPTT 162 (443)
Q Consensus 115 ~~~rv~~~L~~lgl~~--~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L~~----~~~t 162 (443)
...++.++|+.+|+++ ...++++.+||||||| .+..|+.++|++ ++.|
T Consensus 130 ~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~t 209 (529)
T PRK15134 130 ARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMG 209 (529)
T ss_pred HHHHHHHHHHHCCCCChHHHHhhCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCe
Confidence 3568899999999974 2358899999999999 677788887754 4789
Q ss_pred EEEEecCHHHHhccCCcEEEEeCCeeEEEcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy208 163 LLVVSHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAFDKIKTEKLKNQQREIEAQRMHREHVQKFIDTFRYNANRASSVQS 242 (443)
Q Consensus 163 viiVSHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 242 (443)
||+||||.+++..+||+|++|++|++..+ |...++..... ..+. +....
T Consensus 210 vi~vtHd~~~~~~~~dri~~l~~G~i~~~-g~~~~~~~~~~-------~~~~---------~~~~~-------------- 258 (529)
T PRK15134 210 LLFITHNLSIVRKLADRVAVMQNGRCVEQ-NRAATLFSAPT-------HPYT---------QKLLN-------------- 258 (529)
T ss_pred EEEEcCcHHHHHHhcCEEEEEECCEEEEe-CCHHHHhhCCC-------CHHH---------HHHHH--------------
Confidence 99999999999999999999999998754 66544321100 0000 00000
Q ss_pred HHHHHhcCCCCCCCccccccccccCCCCCCCCCeEEEeeeEEEeCC----------CCceeeeeeEEEeCCCEEEEECCC
Q psy208 243 KIKQLERLPELKPIEKEVEVVLKFPDTELLSPPILQLSEVNFEYVP----------GKPILTNVCLGATLESRICIVGDN 312 (443)
Q Consensus 243 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~----------~~~il~~vsl~i~~Ge~i~iiG~N 312 (443)
......+ . + ....+.++|+++|+++.|+. ++++|+++||+|.+|++++|+|||
T Consensus 259 ------~~~~~~~----~------~-~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~n 321 (529)
T PRK15134 259 ------SEPSGDP----V------P-LPEPASPLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGES 321 (529)
T ss_pred ------hCccccc----c------c-cCCCCCCcccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCC
Confidence 0000000 0 0 00113468999999999952 357999999999999999999999
Q ss_pred CCcHHHHHHHHHcCCCCCCceEEEcC--------------ceEEEEeccCcccccccchhHHHHHHHh---CC-CC----
Q psy208 313 GAGKTTLLKIIMGIISPTAGTRTVHR--------------NLKFGYFSQHHVDQLDMNLRCVQLLEAA---FP-GK---- 370 (443)
Q Consensus 313 GsGKSTLlk~l~G~~~p~~G~i~~~~--------------~~~ig~~~Q~~~~~l~~~~~~~~~~~~~---~~-~~---- 370 (443)
|||||||+|+|+|+++ ++|+|++.+ ...++|++|++...+....++.+++... .. ..
T Consensus 322 GsGKSTLlk~l~Gl~~-~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~ 400 (529)
T PRK15134 322 GSGKSTTGLALLRLIN-SQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQ 400 (529)
T ss_pred CCCHHHHHHHHhCcCC-CCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHH
Confidence 9999999999999984 899998754 1248999998632344555666666421 11 01
Q ss_pred CHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 371 PQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 371 ~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
....+.+++..+++..+..++++.+|||||||||+||++|+.+|++|||||||++||+.+++.+.+.|.++
T Consensus 401 ~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~ 471 (529)
T PRK15134 401 REQQVIAVMEEVGLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSL 471 (529)
T ss_pred HHHHHHHHHHHcCCCHHHHhcCCccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHH
Confidence 12456788999999645678999999999999999999999999999999999999999999999999865
No 15
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.3e-46 Score=395.02 Aligned_cols=357 Identities=14% Similarity=0.214 Sum_probs=249.1
Q ss_pred hhhhhhhhhcchHHHHHHHcccccc---------C------------C--CCCcceEEecC------------CceEEEE
Q psy208 7 NTVSNSIFCFSSEFYCKALTLHLHL---------E------------G--GMVSGQLRIPS------------HISVLHV 51 (443)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~---------~------------~--~~~~G~i~~~~------------~~~i~~l 51 (443)
=.+.|+++.|+...+++.+++.+.+ + | .+++|+|.+.. ..+++|+
T Consensus 6 l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v 85 (510)
T PRK09700 6 ISMAGIGKSFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGIGII 85 (510)
T ss_pred EEEeeeEEEcCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCeEEE
Confidence 3567888888776677777777766 2 1 25789987642 1249999
Q ss_pred ecccCC-CCchHHHHHHhccHHHHHHHHHHHHHHHHHhCCCCChhhHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCCCh
Q psy208 52 EQEVVG-DDTPAIDSVLECDTKRQNLLNREKTITQAINNGTADANMSTELTQVFAELEAIEADKAPARASVILAGLGFTP 130 (443)
Q Consensus 52 ~Q~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~~~L~~lgl~~ 130 (443)
+|++.. ...++.+.+..+..... .. .+. ......+...++..+|+.+|+.+
T Consensus 86 ~q~~~~~~~~tv~e~l~~~~~~~~-----------~~-~~~----------------~~~~~~~~~~~~~~~l~~~gl~~ 137 (510)
T PRK09700 86 YQELSVIDELTVLENLYIGRHLTK-----------KV-CGV----------------NIIDWREMRVRAAMMLLRVGLKV 137 (510)
T ss_pred eecccccCCCcHHHHhhhcccccc-----------cc-ccc----------------cccCHHHHHHHHHHHHHHcCCCC
Confidence 998754 33455444321100000 00 000 00000123357888999999975
Q ss_pred hhhhccCCCCChHHHH--------------------------HHHHHHHHHhhh---CCCeEEEEecCHHHHhccCCcEE
Q psy208 131 EMQKRATKHFSGGWRK--------------------------MAIIWLENYLQN---WPTTLLVVSHDRHFLDSVPTDIF 181 (443)
Q Consensus 131 ~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L~~---~~~tviiVSHDr~fLd~v~~~i~ 181 (443)
..++++.+||||||| .+..++.+.|++ .+.|||+||||.+++..+||+|+
T Consensus 138 -~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~ 216 (510)
T PRK09700 138 -DLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYT 216 (510)
T ss_pred -CcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEE
Confidence 468999999999999 577777777643 46899999999999999999999
Q ss_pred EEeCCeeEEEcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccc
Q psy208 182 HLHSQRIDTYRGNYEAFDKIKTEKLKNQQREIEAQRMHREHVQKFIDTFRYNANRASSVQSKIKQLERLPELKPIEKEVE 261 (443)
Q Consensus 182 ~l~~g~i~~~~G~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 261 (443)
+|++|++. +.|+++++.... .++.... .. .. .......+.
T Consensus 217 ~l~~G~i~-~~g~~~~~~~~~-----------------------~~~~~~~--~~---~~---------~~~~~~~~~-- 256 (510)
T PRK09700 217 VMKDGSSV-CSGMVSDVSNDD-----------------------IVRLMVG--RE---LQ---------NRFNAMKEN-- 256 (510)
T ss_pred EEECCEEe-eecchhhCCHHH-----------------------HHHHhcC--CC---cc---------ccccccccc--
Confidence 99999995 678887653210 0000000 00 00 000000000
Q ss_pred cccccCCCCCCCCCeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc--
Q psy208 262 VVLKFPDTELLSPPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-- 339 (443)
Q Consensus 262 ~~~~~~~~~~~~~~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-- 339 (443)
.....++++|+++|+++.|+ .+|+|+||+|.+|++++|+||||||||||+|+|+|+++|++|+|.+.+.
T Consensus 257 ------~~~~~~~~~l~~~~l~~~~~---~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~ 327 (510)
T PRK09700 257 ------VSNLAHETVFEVRNVTSRDR---KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDI 327 (510)
T ss_pred ------cccCCCCcEEEEeCccccCC---CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEEC
Confidence 00011346899999999763 3899999999999999999999999999999999999999999988541
Q ss_pred ----------eEEEEeccCcc-cccccchhHHHHHHHhCC----------C---C--CHHHHHHHHhcCCCChhhhhccC
Q psy208 340 ----------LKFGYFSQHHV-DQLDMNLRCVQLLEAAFP----------G---K--PQEEYRRQLGGFGVSGDLALQFV 393 (443)
Q Consensus 340 ----------~~ig~~~Q~~~-~~l~~~~~~~~~~~~~~~----------~---~--~~~~~~~~L~~~gl~~~~~~~~~ 393 (443)
..+||++|++. ..+....++.+++..... . . ....+.++++.+++..+..++++
T Consensus 328 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 407 (510)
T PRK09700 328 SPRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNI 407 (510)
T ss_pred CCCCHHHHHHCCcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCcc
Confidence 24899999742 234455667666542110 0 0 12346788999999645678999
Q ss_pred CCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 394 GSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 394 ~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
++|||||||||+||++|+.+|++|||||||++||+.+++.+.+.|.++
T Consensus 408 ~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l 455 (510)
T PRK09700 408 TELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQL 455 (510)
T ss_pred ccCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999765
No 16
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=6.9e-46 Score=393.26 Aligned_cols=347 Identities=18% Similarity=0.231 Sum_probs=244.5
Q ss_pred hhhhhhhhcchHHHHHHHcccccc---------C------------C--CCCcceEEecC------------CceEEEEe
Q psy208 8 TVSNSIFCFSSEFYCKALTLHLHL---------E------------G--GMVSGQLRIPS------------HISVLHVE 52 (443)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~---------~------------~--~~~~G~i~~~~------------~~~i~~l~ 52 (443)
++.|+++.|+...+++.+++.+.+ + | .+++|+|.+.+ ...+||++
T Consensus 13 ~~~~l~~~~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~ 92 (510)
T PRK15439 13 CARSISKQYSGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGIYLVP 92 (510)
T ss_pred EEEeEEEEeCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEe
Confidence 356777777766667777776666 1 1 25779997642 13589999
Q ss_pred cccCC-CCchHHHHHHhccHHHHHHHHHHHHHHHHHhCCCCChhhHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCCChh
Q psy208 53 QEVVG-DDTPAIDSVLECDTKRQNLLNREKTITQAINNGTADANMSTELTQVFAELEAIEADKAPARASVILAGLGFTPE 131 (443)
Q Consensus 53 Q~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~~~L~~lgl~~~ 131 (443)
|++.. ...++.+.+..... . ....+.++..+|..+|++.
T Consensus 93 q~~~~~~~~tv~e~l~~~~~---------------------~------------------~~~~~~~~~~~l~~~~l~~- 132 (510)
T PRK15439 93 QEPLLFPNLSVKENILFGLP---------------------K------------------RQASMQKMKQLLAALGCQL- 132 (510)
T ss_pred ccCccCCCCcHHHHhhcccc---------------------c------------------chHHHHHHHHHHHHcCCCc-
Confidence 99754 33455443321100 0 0012346788899999974
Q ss_pred hhhccCCCCChHHHH--------------------------HHHHHHHHHhhh---CCCeEEEEecCHHHHhccCCcEEE
Q psy208 132 MQKRATKHFSGGWRK--------------------------MAIIWLENYLQN---WPTTLLVVSHDRHFLDSVPTDIFH 182 (443)
Q Consensus 132 ~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L~~---~~~tviiVSHDr~fLd~v~~~i~~ 182 (443)
.+++++.+||||||+ .++.|+.++|++ .+.|||+||||.+++..+||+|++
T Consensus 133 ~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~ 212 (510)
T PRK15439 133 DLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISV 212 (510)
T ss_pred cccCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEE
Confidence 468999999999999 678888888754 367999999999999999999999
Q ss_pred EeCCeeEEEcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccccc
Q psy208 183 LHSQRIDTYRGNYEAFDKIKTEKLKNQQREIEAQRMHREHVQKFIDTFRYNANRASSVQSKIKQLERLPELKPIEKEVEV 262 (443)
Q Consensus 183 l~~g~i~~~~G~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 262 (443)
|++|++. +.|+++.+..... .+ .+ .. . .... .+... .. .
T Consensus 213 l~~G~i~-~~g~~~~~~~~~~--~~----~~-------------~~---~--~~~~-------~~~~~---~~------~ 251 (510)
T PRK15439 213 MRDGTIA-LSGKTADLSTDDI--IQ----AI-------------TP---A--AREK-------SLSAS---QK------L 251 (510)
T ss_pred EECCEEE-EecChHHcCHHHH--HH----HH-------------hC---c--cccc-------ccccc---cc------c
Confidence 9999996 5799887743210 00 00 00 0 0000 00000 00 0
Q ss_pred ccccCC---CCCCCCCeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc
Q psy208 263 VLKFPD---TELLSPPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN 339 (443)
Q Consensus 263 ~~~~~~---~~~~~~~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~ 339 (443)
.+.++. ....++++|+++|+++ .+|+++||+|++|++++|+||||||||||+|+|+|+++|++|+|.+.+.
T Consensus 252 ~~~~~~~~~~~~~~~~~l~~~~l~~------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~ 325 (510)
T PRK15439 252 WLELPGNRRQQAAGAPVLTVEDLTG------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGK 325 (510)
T ss_pred cccccccccccCCCCceEEEeCCCC------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCE
Confidence 000110 0112456899999983 1699999999999999999999999999999999999999999987542
Q ss_pred ------------eEEEEeccCcc-cccccchhHHHHHHHh------CC-CC--CHHHHHHHHhcCCCChhhhhccCCCCC
Q psy208 340 ------------LKFGYFSQHHV-DQLDMNLRCVQLLEAA------FP-GK--PQEEYRRQLGGFGVSGDLALQFVGSLS 397 (443)
Q Consensus 340 ------------~~ig~~~Q~~~-~~l~~~~~~~~~~~~~------~~-~~--~~~~~~~~L~~~gl~~~~~~~~~~~LS 397 (443)
..++|++|++. ..+....++.+++... .. .. ....+.++|..+++.....++++.+||
T Consensus 326 ~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS 405 (510)
T PRK15439 326 EINALSTAQRLARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLS 405 (510)
T ss_pred ECCCCCHHHHHhCCcEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCC
Confidence 25899999742 1233444555554211 10 11 123467889999996346789999999
Q ss_pred HHHHHHHHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 398 GGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 398 gGekqRl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
|||||||+||++++.+|+||||||||+|||+.+++.+.+.|.++
T Consensus 406 gG~kqrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l 449 (510)
T PRK15439 406 GGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSI 449 (510)
T ss_pred cHHHHHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998875
No 17
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=8.4e-46 Score=390.97 Aligned_cols=284 Identities=23% Similarity=0.250 Sum_probs=207.8
Q ss_pred HHHHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------HHHHHHHHHhhhC---CCeEEE
Q psy208 115 APARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAIIWLENYLQNW---PTTLLV 165 (443)
Q Consensus 115 ~~~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L~~~---~~tvii 165 (443)
.+.++.++++.+|+++ .+++++.+||||||+ .+..|+.+.|+++ +.|||+
T Consensus 112 ~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii 190 (490)
T PRK10938 112 DPARCEQLAQQFGITA-LLDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVL 190 (490)
T ss_pred HHHHHHHHHHHcCCHh-hhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEE
Confidence 3467889999999975 468999999999999 6788888888554 679999
Q ss_pred EecCHHHHhccCCcEEEEeCCeeEEEcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy208 166 VSHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAFDKIKTEKLKNQQREIEAQRMHREHVQKFIDTFRYNANRASSVQSKIK 245 (443)
Q Consensus 166 VSHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 245 (443)
||||.+++..+||+|++|++|++. +.|+++.+..... . .+... . .
T Consensus 191 ~tH~~~~~~~~~d~v~~l~~G~i~-~~~~~~~~~~~~~---------~--------------~~~~~--~---------~ 235 (490)
T PRK10938 191 VLNRFDEIPDFVQFAGVLADCTLA-ETGEREEILQQAL---------V--------------AQLAH--S---------E 235 (490)
T ss_pred EeCCHHHHHhhCCEEEEEECCEEE-EeCCHHHHhcchh---------h--------------hhhhh--h---------h
Confidence 999999999999999999999996 4577655421100 0 00000 0 0
Q ss_pred HHhcCCCCCCCccccccccccCCCCCCCCCeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHc
Q psy208 246 QLERLPELKPIEKEVEVVLKFPDTELLSPPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMG 325 (443)
Q Consensus 246 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G 325 (443)
.+.... .+...+... +.......++|+++|+++.|+ ++.+|+|+||+|.+|++++|+||||||||||+|+|+|
T Consensus 236 ~~~~~~--~~~~~~~~~----~~~~~~~~~~l~~~~l~~~~~-~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G 308 (490)
T PRK10938 236 QLEGVQ--LPEPDEPSA----RHALPANEPRIVLNNGVVSYN-DRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITG 308 (490)
T ss_pred ccCccc--cCccccccc----ccccCCCCceEEEeceEEEEC-CeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcC
Confidence 000000 000000000 000112356899999999996 4679999999999999999999999999999999999
Q ss_pred CCCC-CCceEEEcCc------------eEEEEeccCcccccccchhHHHHHHHh-------CCCCC---HHHHHHHHhcC
Q psy208 326 IISP-TAGTRTVHRN------------LKFGYFSQHHVDQLDMNLRCVQLLEAA-------FPGKP---QEEYRRQLGGF 382 (443)
Q Consensus 326 ~~~p-~~G~i~~~~~------------~~ig~~~Q~~~~~l~~~~~~~~~~~~~-------~~~~~---~~~~~~~L~~~ 382 (443)
+.+| ++|+|.+.+. ..++|++|++........+..+.+... ..... .+.+..++..+
T Consensus 309 ~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 388 (490)
T PRK10938 309 DHPQGYSNDLTLFGRRRGSGETIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDIL 388 (490)
T ss_pred CCCcccCCeEEEecccCCCCCCHHHHHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHc
Confidence 8876 6999987531 248999997532122222333333211 01111 23567889999
Q ss_pred CCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 383 GVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 383 gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
++..+..++++.+|||||||||+||++++.+|++|||||||++||+.+++.+.+.|.++
T Consensus 389 ~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l 447 (490)
T PRK10938 389 GIDKRTADAPFHSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVL 447 (490)
T ss_pred CCchhhccCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHH
Confidence 99743678999999999999999999999999999999999999999999999999875
No 18
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=7.1e-46 Score=392.46 Aligned_cols=276 Identities=18% Similarity=0.252 Sum_probs=204.3
Q ss_pred HHHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------HHHHHHHHHhhh---CCCeEEEE
Q psy208 116 PARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAIIWLENYLQN---WPTTLLVV 166 (443)
Q Consensus 116 ~~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L~~---~~~tviiV 166 (443)
..++.++|+.+|+.....++++.+||||||+ .+..|+.+.|++ .+.|||+|
T Consensus 118 ~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviii 197 (500)
T TIGR02633 118 YLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYI 197 (500)
T ss_pred HHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 3478889999999753336789999999999 677888887743 46799999
Q ss_pred ecCHHHHhccCCcEEEEeCCeeEEEcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy208 167 SHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAFDKIKTEKLKNQQREIEAQRMHREHVQKFIDTFRYNANRASSVQSKIKQ 246 (443)
Q Consensus 167 SHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 246 (443)
|||.+++..+||+|++|++|++..+ |....+... . .+.... ..
T Consensus 198 tHd~~~~~~~~d~i~~l~~G~i~~~-~~~~~~~~~-------------~----------~~~~~~--~~----------- 240 (500)
T TIGR02633 198 SHKLNEVKAVCDTICVIRDGQHVAT-KDMSTMSED-------------D----------IITMMV--GR----------- 240 (500)
T ss_pred eCcHHHHHHhCCEEEEEeCCeEeee-cCcccCCHH-------------H----------HHHHHh--Cc-----------
Confidence 9999999999999999999998643 443322100 0 000000 00
Q ss_pred HhcCCCCCCCccccccccccCCCCCCCCCeEEEeeeEEEeC--CCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHH
Q psy208 247 LERLPELKPIEKEVEVVLKFPDTELLSPPILQLSEVNFEYV--PGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIM 324 (443)
Q Consensus 247 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~--~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~ 324 (443)
......+ .. ....++++|+++|++++|+ +++.+|+|+||+|.+|++++|+||||||||||+|+|+
T Consensus 241 --~~~~~~~---~~--------~~~~~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~ 307 (500)
T TIGR02633 241 --EITSLYP---HE--------PHEIGDVILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALF 307 (500)
T ss_pred --ccccccc---cc--------ccCCCCceEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHh
Confidence 0000000 00 0011345899999999983 2357999999999999999999999999999999999
Q ss_pred cCCCC-CCceEEEcC------------ceEEEEeccCcc-cccccchhHHHHHHHh----CC---CCC----HHHHHHHH
Q psy208 325 GIISP-TAGTRTVHR------------NLKFGYFSQHHV-DQLDMNLRCVQLLEAA----FP---GKP----QEEYRRQL 379 (443)
Q Consensus 325 G~~~p-~~G~i~~~~------------~~~ig~~~Q~~~-~~l~~~~~~~~~~~~~----~~---~~~----~~~~~~~L 379 (443)
|+++| ++|+|.+.+ ...+||++|++. ..+....++.+++... +. ... ...+.+++
T Consensus 308 G~~~p~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 387 (500)
T TIGR02633 308 GAYPGKFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAI 387 (500)
T ss_pred CCCCCCCCeEEEECCEECCCCCHHHHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHH
Confidence 99985 899998753 124899999852 1234444555544211 10 111 23567889
Q ss_pred hcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 380 GGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 380 ~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
+.+++.....++++.+|||||||||+||++++.+|++|||||||++||+.+++.+.+.|.++
T Consensus 388 ~~~~l~~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l 449 (500)
T TIGR02633 388 QRLKVKTASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQL 449 (500)
T ss_pred HhcCccCCCccCccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHH
Confidence 99999644578999999999999999999999999999999999999999999999888765
No 19
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.1e-46 Score=393.44 Aligned_cols=274 Identities=18% Similarity=0.227 Sum_probs=206.1
Q ss_pred HHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------HHHHHHHHHhhh---CCCeEEEEe
Q psy208 117 ARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAIIWLENYLQN---WPTTLLVVS 167 (443)
Q Consensus 117 ~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L~~---~~~tviiVS 167 (443)
.++.++|..+|++. ..++++.+||||||| .+..++.+.|++ .+.|||+||
T Consensus 122 ~~~~~~l~~~~l~~-~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~t 200 (506)
T PRK13549 122 LRAQKLLAQLKLDI-NPATPVGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYIS 200 (506)
T ss_pred HHHHHHHHHcCCCC-CcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEe
Confidence 47888999999974 468999999999999 567777777744 467999999
Q ss_pred cCHHHHhccCCcEEEEeCCeeEEEcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy208 168 HDRHFLDSVPTDIFHLHSQRIDTYRGNYEAFDKIKTEKLKNQQREIEAQRMHREHVQKFIDTFRYNANRASSVQSKIKQL 247 (443)
Q Consensus 168 HDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l 247 (443)
||.+++..+||+|++|++|++. +.|+.+.+.... .++... ..
T Consensus 201 H~~~~~~~~~d~v~~l~~G~i~-~~~~~~~~~~~~-----------------------~~~~~~--~~------------ 242 (506)
T PRK13549 201 HKLNEVKAISDTICVIRDGRHI-GTRPAAGMTEDD-----------------------IITMMV--GR------------ 242 (506)
T ss_pred CcHHHHHHhcCEEEEEECCEEe-eecccccCCHHH-----------------------HHHHhh--Cc------------
Confidence 9999999999999999999986 456644431100 000000 00
Q ss_pred hcCCCCCCCccccccccccCCCCCCCCCeEEEeeeEEEeC--CCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHc
Q psy208 248 ERLPELKPIEKEVEVVLKFPDTELLSPPILQLSEVNFEYV--PGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMG 325 (443)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~--~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G 325 (443)
......+. . . ...+.++|+++|++++|+ +++++|+|+||+|++|++++|+||||||||||+|+|+|
T Consensus 243 -~~~~~~~~---~-------~-~~~~~~~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~G 310 (506)
T PRK13549 243 -ELTALYPR---E-------P-HTIGEVILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFG 310 (506)
T ss_pred -Cccccccc---c-------c-cCCCCceEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhC
Confidence 00000000 0 0 011346899999999994 23579999999999999999999999999999999999
Q ss_pred CCC-CCCceEEEcCc------------eEEEEeccCcc-cccccchhHHHHHHHh----CCC----C---CHHHHHHHHh
Q psy208 326 IIS-PTAGTRTVHRN------------LKFGYFSQHHV-DQLDMNLRCVQLLEAA----FPG----K---PQEEYRRQLG 380 (443)
Q Consensus 326 ~~~-p~~G~i~~~~~------------~~ig~~~Q~~~-~~l~~~~~~~~~~~~~----~~~----~---~~~~~~~~L~ 380 (443)
+++ |++|+|.+.+. ..++|++|++. ..+....++.+++... +.. . ..+.+.++++
T Consensus 311 l~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 390 (506)
T PRK13549 311 AYPGRWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQ 390 (506)
T ss_pred CCCCCCCcEEEECCEECCCCCHHHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHH
Confidence 998 59999987531 24899999852 1234455666655321 110 1 1235778899
Q ss_pred cCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 381 GFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 381 ~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
.+++.....++++.+|||||||||+||++++.+|++|||||||++||+.+++.+.+.|.++
T Consensus 391 ~~~l~~~~~~~~~~~LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l 451 (506)
T PRK13549 391 RLKVKTASPELAIARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQL 451 (506)
T ss_pred hcCccCCCcccccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHH
Confidence 9999644678999999999999999999999999999999999999999999999998765
No 20
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=8.2e-45 Score=389.24 Aligned_cols=280 Identities=22% Similarity=0.289 Sum_probs=207.7
Q ss_pred HHHHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------HHHHHHHHHhhhC--CCeEEEE
Q psy208 115 APARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAIIWLENYLQNW--PTTLLVV 166 (443)
Q Consensus 115 ~~~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L~~~--~~tviiV 166 (443)
...++.+++..+|+.. .+++++.+||||||| .++.|+.++|+++ +.|||+|
T Consensus 189 ~~~~~~~~l~~l~l~~-~~~~~~~~LSgGe~qrv~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~g~tvIiv 267 (590)
T PRK13409 189 ERGKLDEVVERLGLEN-ILDRDISELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAEGKYVLVV 267 (590)
T ss_pred HHHHHHHHHHHcCCch-hhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEE
Confidence 3457899999999975 468999999999999 6777888888655 8899999
Q ss_pred ecCHHHHhccCCcEEEEeCCeeEEEcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy208 167 SHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAFDKIKTEKLKNQQREIEAQRMHREHVQKFIDTFRYNANRASSVQSKIKQ 246 (443)
Q Consensus 167 SHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 246 (443)
|||+++++.+||+|+.|+++ .|.|..|...+..+ . .+..+...+.. . ..
T Consensus 268 sHd~~~l~~~~D~v~vl~~~-----~g~~g~~~~~~~~~-~--------------~i~~~~~~~~~----~----e~--- 316 (590)
T PRK13409 268 EHDLAVLDYLADNVHIAYGE-----PGAYGVVSKPKGVR-V--------------GINEYLKGYLP----E----EN--- 316 (590)
T ss_pred eCCHHHHHHhCCEEEEEeCC-----ccccceecchhHHH-H--------------hHHHHHHhcch----h----hh---
Confidence 99999999999999999753 23343332221110 0 00011110000 0 00
Q ss_pred HhcCCCCCCCccccccccccCCCC--CCCCCeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHH
Q psy208 247 LERLPELKPIEKEVEVVLKFPDTE--LLSPPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIM 324 (443)
Q Consensus 247 l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~ 324 (443)
. +... .+..+.++... ..+.++|+++|++++|+ + ..|+++||+|.+|++++|+||||||||||+|+|+
T Consensus 317 ~-~~~~-------~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~-~-~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~ 386 (590)
T PRK13409 317 M-RIRP-------EPIEFEERPPRDESERETLVEYPDLTKKLG-D-FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLA 386 (590)
T ss_pred h-hccc-------cCcceecCCCccccCCceEEEEcceEEEEC-C-EEEEecceEECCCCEEEEECCCCCCHHHHHHHHh
Confidence 0 0000 00011111111 12456899999999995 3 3699999999999999999999999999999999
Q ss_pred cCCCCCCceEEEcCceEEEEeccCcccccccchhHHHHHHHhCCCC-CHHHHHHHHhcCCCChhhhhccCCCCCHHHHHH
Q psy208 325 GIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEAAFPGK-PQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSR 403 (443)
Q Consensus 325 G~~~p~~G~i~~~~~~~ig~~~Q~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqR 403 (443)
|+++|++|+|.+. ..++|++|++. +....++.+++....... ....+.++|..+++. +..++++.+||||||||
T Consensus 387 Gl~~p~~G~I~~~--~~i~y~~Q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~L~~l~l~-~~~~~~~~~LSGGe~QR 461 (590)
T PRK13409 387 GVLKPDEGEVDPE--LKISYKPQYIK--PDYDGTVEDLLRSITDDLGSSYYKSEIIKPLQLE-RLLDKNVKDLSGGELQR 461 (590)
T ss_pred CCCCCCceEEEEe--eeEEEeccccc--CCCCCcHHHHHHHHhhhcChHHHHHHHHHHCCCH-HHHhCCcccCCHHHHHH
Confidence 9999999999875 57999999863 345567776664321111 233567889999996 67899999999999999
Q ss_pred HHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 404 VAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 404 l~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
|+||++|+.+|++|||||||+|||+.++..+.+.|+++
T Consensus 462 vaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l 499 (590)
T PRK13409 462 VAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRI 499 (590)
T ss_pred HHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999876
No 21
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.1e-45 Score=388.91 Aligned_cols=271 Identities=16% Similarity=0.209 Sum_probs=201.1
Q ss_pred HHHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------HHHHHHHHHhhh---CCCeEEEE
Q psy208 116 PARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAIIWLENYLQN---WPTTLLVV 166 (443)
Q Consensus 116 ~~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L~~---~~~tviiV 166 (443)
..++..+|+.+|++. ..++++.+||||||| .++.|+.++|++ .+.|||+|
T Consensus 118 ~~~~~~~l~~~~l~~-~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiii 196 (501)
T PRK11288 118 NYEAREQLEHLGVDI-DPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYV 196 (501)
T ss_pred HHHHHHHHHHcCCCC-CcCCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 457888999999974 358899999999999 678888888754 46799999
Q ss_pred ecCHHHHhccCCcEEEEeCCeeEEEcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy208 167 SHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAFDKIKTEKLKNQQREIEAQRMHREHVQKFIDTFRYNANRASSVQSKIKQ 246 (443)
Q Consensus 167 SHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 246 (443)
|||.+++..+||+|++|++|++.. .|+.+..... +. .......
T Consensus 197 tHd~~~~~~~~d~i~~l~~G~i~~---~~~~~~~~~~----------~~----------~~~~~~~-------------- 239 (501)
T PRK11288 197 SHRMEEIFALCDAITVFKDGRYVA---TFDDMAQVDR----------DQ----------LVQAMVG-------------- 239 (501)
T ss_pred eCCHHHHHHhCCEEEEEECCEEEe---ecCccccCCH----------HH----------HHHHhcC--------------
Confidence 999999999999999999999863 2222210000 00 0000000
Q ss_pred HhcCCCCCCCccccccccccCCCCCCCCCeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcC
Q psy208 247 LERLPELKPIEKEVEVVLKFPDTELLSPPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGI 326 (443)
Q Consensus 247 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~ 326 (443)
........ . .+...+.++++++|+++. .+++|+||+|.+|++++|+||||||||||+|+|+|+
T Consensus 240 -~~~~~~~~----------~-~~~~~~~~~l~~~~~~~~-----~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~ 302 (501)
T PRK11288 240 -REIGDIYG----------Y-RPRPLGEVRLRLDGLKGP-----GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGA 302 (501)
T ss_pred -CCcccccc----------c-cccCCCCcEEEEeccccC-----CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCC
Confidence 00000000 0 000113457999999842 489999999999999999999999999999999999
Q ss_pred CCCCCceEEEcCc------------eEEEEeccCcc-cccccchhHHHHHHHhC-C---------CC--CHHHHHHHHhc
Q psy208 327 ISPTAGTRTVHRN------------LKFGYFSQHHV-DQLDMNLRCVQLLEAAF-P---------GK--PQEEYRRQLGG 381 (443)
Q Consensus 327 ~~p~~G~i~~~~~------------~~ig~~~Q~~~-~~l~~~~~~~~~~~~~~-~---------~~--~~~~~~~~L~~ 381 (443)
++|++|+|.+.+. ..++|++|++. ..+....++.+++.... . .. ..+.+.++++.
T Consensus 303 ~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 382 (501)
T PRK11288 303 TRRTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRS 382 (501)
T ss_pred CcCCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHh
Confidence 9999999988531 35899999852 12344556666653210 0 00 12356789999
Q ss_pred CCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 382 FGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 382 ~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
+++..+..++++.+|||||||||+||++++.+|++|||||||+|||+.+++.+.++|.++
T Consensus 383 ~~l~~~~~~~~~~~LSgGq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l 442 (501)
T PRK11288 383 LNIKTPSREQLIMNLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYEL 442 (501)
T ss_pred cCcccCCccCccccCCHHHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHH
Confidence 999545678999999999999999999999999999999999999999999999998664
No 22
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=4.8e-45 Score=386.19 Aligned_cols=269 Identities=21% Similarity=0.288 Sum_probs=201.3
Q ss_pred HHHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------HHHHHHHHHhh---hCCCeEEEE
Q psy208 116 PARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAIIWLENYLQ---NWPTTLLVV 166 (443)
Q Consensus 116 ~~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L~---~~~~tviiV 166 (443)
..++.++|+.+|+.+ ..++++.+||||||+ .+..++.+.|+ +.+.|||+|
T Consensus 119 ~~~~~~~l~~~~l~~-~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~ 197 (501)
T PRK10762 119 YAEADKLLARLNLRF-SSDKLVGELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYI 197 (501)
T ss_pred HHHHHHHHHHcCCCC-CccCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 357888999999985 468999999999999 56667665553 457799999
Q ss_pred ecCHHHHhccCCcEEEEeCCeeEEEcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy208 167 SHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAFDKIKTEKLKNQQREIEAQRMHREHVQKFIDTFRYNANRASSVQSKIKQ 246 (443)
Q Consensus 167 SHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 246 (443)
|||.+++..+||+|++|++|++.. .|...+.... . ..+... ..
T Consensus 198 sHd~~~~~~~~d~i~~l~~G~i~~-~~~~~~~~~~------~-----------------~~~~~~--~~----------- 240 (501)
T PRK10762 198 SHRLKEIFEICDDVTVFRDGQFIA-EREVADLTED------S-----------------LIEMMV--GR----------- 240 (501)
T ss_pred eCCHHHHHHhCCEEEEEeCCEEEE-ecCcCcCCHH------H-----------------HHHHhc--CC-----------
Confidence 999999999999999999999864 4544332100 0 000000 00
Q ss_pred HhcCCCCCCCccccccccccCCCCCCCCCeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcC
Q psy208 247 LERLPELKPIEKEVEVVLKFPDTELLSPPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGI 326 (443)
Q Consensus 247 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~ 326 (443)
+... ..+ . ++. ..+.++|+++|+++ ++|+++||+|.+|++++|+||||||||||+|+|+|+
T Consensus 241 --~~~~--~~~-----~--~~~--~~~~~~l~~~~l~~------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~ 301 (501)
T PRK10762 241 --KLED--QYP-----R--LDK--APGEVRLKVDNLSG------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGA 301 (501)
T ss_pred --Cccc--ccc-----c--ccc--CCCCcEEEEeCccc------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCC
Confidence 0000 000 0 000 11346899999984 379999999999999999999999999999999999
Q ss_pred CCCCCceEEEcCc------------eEEEEeccCcc-cccccchhHHHHHHHh----CC---C-C----CHHHHHHHHhc
Q psy208 327 ISPTAGTRTVHRN------------LKFGYFSQHHV-DQLDMNLRCVQLLEAA----FP---G-K----PQEEYRRQLGG 381 (443)
Q Consensus 327 ~~p~~G~i~~~~~------------~~ig~~~Q~~~-~~l~~~~~~~~~~~~~----~~---~-~----~~~~~~~~L~~ 381 (443)
++|++|+|.+.+. ..+||++|++. ..+....++.+++... .. . . ..+.+.++++.
T Consensus 302 ~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 381 (501)
T PRK10762 302 LPRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRL 381 (501)
T ss_pred CCCCceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHh
Confidence 9999999988541 24899999852 1234455666655321 10 0 1 12357788999
Q ss_pred CCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 382 FGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 382 ~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
+++.....++++.+|||||||||+||++++.+|++|||||||++||+.+++.+.+.|.++
T Consensus 382 ~~l~~~~~~~~~~~LSgGekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~ 441 (501)
T PRK10762 382 FNIKTPSMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQF 441 (501)
T ss_pred cCCCCCCccCchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHH
Confidence 999534678999999999999999999999999999999999999999999999999876
No 23
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.5e-44 Score=378.71 Aligned_cols=271 Identities=18% Similarity=0.223 Sum_probs=199.0
Q ss_pred HHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------HHHHHHHHHhhh---CCCeEEEEe
Q psy208 117 ARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAIIWLENYLQN---WPTTLLVVS 167 (443)
Q Consensus 117 ~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L~~---~~~tviiVS 167 (443)
.++.++++.+|+.. ..++++.+||||||+ .+..||.++|++ .+.|||+||
T Consensus 113 ~~~~~~l~~~~l~~-~~~~~~~~LSgGq~qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~t 191 (491)
T PRK10982 113 RDTKAIFDELDIDI-DPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYIS 191 (491)
T ss_pred HHHHHHHHHcCCCC-CccCchhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 46788899999975 468899999999999 677888887754 467999999
Q ss_pred cCHHHHhccCCcEEEEeCCeeEEEcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy208 168 HDRHFLDSVPTDIFHLHSQRIDTYRGNYEAFDKIKTEKLKNQQREIEAQRMHREHVQKFIDTFRYNANRASSVQSKIKQL 247 (443)
Q Consensus 168 HDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l 247 (443)
||.+++..+||+|++|++|++.. .|+-...... . ..+..- . .
T Consensus 192 H~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~~~~-------------~----------~~~~~~--~-~----------- 233 (491)
T PRK10982 192 HKMEEIFQLCDEITILRDGQWIA-TQPLAGLTMD-------------K----------IIAMMV--G-R----------- 233 (491)
T ss_pred cCHHHHHHhCCEEEEEECCEEEe-ecChhhCCHH-------------H----------HHHHHh--C-C-----------
Confidence 99999999999999999999863 4553322100 0 000000 0 0
Q ss_pred hcCCCCCCCccccccccccCCCCCCCCCeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCC
Q psy208 248 ERLPELKPIEKEVEVVLKFPDTELLSPPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
......+. +. ...++++|+++|+++.| +++|+++||+|++|+++||+||||||||||+|+|+|+.
T Consensus 234 -~~~~~~~~----------~~-~~~~~~~i~~~~l~~~~---~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 298 (491)
T PRK10982 234 -SLTQRFPD----------KE-NKPGEVILEVRNLTSLR---QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIR 298 (491)
T ss_pred -Cccccccc----------cc-CCCCCcEEEEeCccccc---CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCC
Confidence 00000000 00 01134689999999974 35999999999999999999999999999999999999
Q ss_pred CCCCceEEEcCc------------eEEEEeccCccc-ccccchhH-----HHHHHHhC---C--CC--CHHHHHHHHhcC
Q psy208 328 SPTAGTRTVHRN------------LKFGYFSQHHVD-QLDMNLRC-----VQLLEAAF---P--GK--PQEEYRRQLGGF 382 (443)
Q Consensus 328 ~p~~G~i~~~~~------------~~ig~~~Q~~~~-~l~~~~~~-----~~~~~~~~---~--~~--~~~~~~~~L~~~ 382 (443)
+|++|+|.+++. ..++|++|++.. .+....+. .+.+.... . .. ....+..+++.+
T Consensus 299 ~p~~G~i~~~g~~i~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 378 (491)
T PRK10982 299 EKSAGTITLHGKKINNHNANEAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSM 378 (491)
T ss_pred cCCccEEEECCEECCCCCHHHHHHCCCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhc
Confidence 999999988641 128999997421 12222222 22221111 1 10 123467888999
Q ss_pred CCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 383 GVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 383 gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
++..+..++++.+|||||||||+||++++.+|+||||||||+|||+.+++.+.+.|.++
T Consensus 379 ~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l 437 (491)
T PRK10982 379 RVKTPGHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAEL 437 (491)
T ss_pred CccCCCcccccccCCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHH
Confidence 98544578999999999999999999999999999999999999999999999988654
No 24
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=9.8e-42 Score=335.41 Aligned_cols=294 Identities=20% Similarity=0.309 Sum_probs=227.1
Q ss_pred HHHHHHHHhhcccCCHHHHHHHHHHhCCCC--hhhhhccCCCCChHHHH-----------------------------HH
Q psy208 100 LTQVFAELEAIEADKAPARASVILAGLGFT--PEMQKRATKHFSGGWRK-----------------------------MA 148 (443)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~rv~~~L~~lgl~--~~~~~~~~~~LSGGqr~-----------------------------~~ 148 (443)
+.+....+..+....+++|+-+.|..+|++ +..++..+++||||||| .-
T Consensus 116 i~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQ 195 (534)
T COG4172 116 LAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQ 195 (534)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHH
Confidence 344444555566677888999999999997 35678999999999999 23
Q ss_pred HHHHHHHh-hhCCCeEEEEecCHHHHhccCCcEEEEeCCeeEEEcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy208 149 IIWLENYL-QNWPTTLLVVSHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAFDKIKTEKLKNQQREIEAQRMHREHVQKFI 227 (443)
Q Consensus 149 i~wL~~~L-~~~~~tviiVSHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 227 (443)
|..|..-| ++++.++++||||...+..+||+|++|..|++.. .|...... ...+..|.++.
T Consensus 196 IL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~ivE-~~~t~~lF-------~~PqHpYTr~L---------- 257 (534)
T COG4172 196 ILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIVE-TGTTETLF-------AAPQHPYTRKL---------- 257 (534)
T ss_pred HHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEEee-cCcHHHHh-------hCCCChHHHHH----------
Confidence 33444445 5789999999999999999999999999999975 34433221 12222222210
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccccccccCCCCCCCCCeEEEeeeEEEeCCC----------Cceeeeee
Q psy208 228 DTFRYNANRASSVQSKIKQLERLPELKPIEKEVEVVLKFPDTELLSPPILQLSEVNFEYVPG----------KPILTNVC 297 (443)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~----------~~il~~vs 297 (443)
++. .|...+ ++.+...+++++.+++.+.|+-. ..+++++|
T Consensus 258 -------------------l~a----eP~g~~-------~p~~~~~~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~is 307 (534)
T COG4172 258 -------------------LAA----EPSGDP-------PPLPEDAPVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGIS 307 (534)
T ss_pred -------------------Hhc----CCCCCC-------CCCCCCCCceEEecceEEEEecCCccccccchheEEeccce
Confidence 000 111000 11122346799999999999621 24889999
Q ss_pred EEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcC--------------ceEEEEeccCcccccccchhHHHHH
Q psy208 298 LGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR--------------NLKFGYFSQHHVDQLDMNLRCVQLL 363 (443)
Q Consensus 298 l~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~--------------~~~ig~~~Q~~~~~l~~~~~~~~~~ 363 (443)
|++.+|+.+||||.+|||||||-.+|.+++++. |+|.+.+ +..+-.+||+|...+++..++.+.+
T Consensus 308 l~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII 386 (534)
T COG4172 308 LTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQII 386 (534)
T ss_pred eEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHh
Confidence 999999999999999999999999999999887 9998753 2357789999988899988887776
Q ss_pred HHhC----CCC----CHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCCHHHHHHHH
Q psy208 364 EAAF----PGK----PQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALG 435 (443)
Q Consensus 364 ~~~~----~~~----~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~ 435 (443)
.... +.. .++++.+.|..+|+++...+++|++.|||||||++||||++.+|.+++|||||+.||...+.++.
T Consensus 387 ~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv 466 (534)
T COG4172 387 EEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVL 466 (534)
T ss_pred hhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHH
Confidence 5422 111 24567889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcccc
Q psy208 436 KAINKYT 442 (443)
Q Consensus 436 ~~L~~~~ 442 (443)
+.|++..
T Consensus 467 ~LLr~LQ 473 (534)
T COG4172 467 DLLRDLQ 473 (534)
T ss_pred HHHHHHH
Confidence 9998753
No 25
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=9e-41 Score=317.72 Aligned_cols=166 Identities=28% Similarity=0.521 Sum_probs=144.6
Q ss_pred CeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc--------eEEEEec
Q psy208 275 PILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN--------LKFGYFS 346 (443)
Q Consensus 275 ~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~--------~~ig~~~ 346 (443)
++|+++|++++|++. ++|+||||+|.+|++++|+||||||||||+|+|+|+++|++|+|.+.+. .+|||+|
T Consensus 3 ~~i~v~nl~v~y~~~-~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVP 81 (254)
T COG1121 3 PMIEVENLTVSYGNR-PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVP 81 (254)
T ss_pred cEEEEeeeEEEECCE-eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcC
Confidence 579999999999644 7999999999999999999999999999999999999999999987542 5799999
Q ss_pred cCcccccccchhHHHHHHHhC-C---------CCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCe
Q psy208 347 QHHVDQLDMNLRCVQLLEAAF-P---------GKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNF 416 (443)
Q Consensus 347 Q~~~~~l~~~~~~~~~~~~~~-~---------~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~l 416 (443)
|..........++.+.+.... . ..+.+.+.+.|+.+|+. +..++++++|||||+|||.|||||+++|++
T Consensus 82 Q~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~-~~~~r~i~~LSGGQ~QRV~lARAL~~~p~l 160 (254)
T COG1121 82 QKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGME-DLRDRQIGELSGGQKQRVLLARALAQNPDL 160 (254)
T ss_pred cccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCch-hhhCCcccccCcHHHHHHHHHHHhccCCCE
Confidence 975444455667777765421 1 11246789999999997 789999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHcccc
Q psy208 417 LVLDEPTNHLDIETIEALGKAINKYT 442 (443)
Q Consensus 417 LiLDEPTn~LD~~s~~~l~~~L~~~~ 442 (443)
|||||||+++|+.++..+.+.|.+++
T Consensus 161 llLDEP~~gvD~~~~~~i~~lL~~l~ 186 (254)
T COG1121 161 LLLDEPFTGVDVAGQKEIYDLLKELR 186 (254)
T ss_pred EEecCCcccCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999998764
No 26
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=4.7e-41 Score=307.93 Aligned_cols=163 Identities=28% Similarity=0.436 Sum_probs=144.0
Q ss_pred CeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc------------eEE
Q psy208 275 PILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN------------LKF 342 (443)
Q Consensus 275 ~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------------~~i 342 (443)
++|+++||+++|+ +..+|++||++|.+||+++|+||+|||||||||||.|+..|++|+|.+++. .++
T Consensus 1 ~mi~i~~l~K~fg-~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~v 79 (240)
T COG1126 1 MMIEIKNLSKSFG-DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKV 79 (240)
T ss_pred CeEEEEeeeEEeC-CeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhc
Confidence 3799999999996 678999999999999999999999999999999999999999999998761 258
Q ss_pred EEeccCcccccccchhHHHHHHHh---CCCCC----HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCC
Q psy208 343 GYFSQHHVDQLDMNLRCVQLLEAA---FPGKP----QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPN 415 (443)
Q Consensus 343 g~~~Q~~~~~l~~~~~~~~~~~~~---~~~~~----~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~ 415 (443)
|++||+. ++.+..|+++++... ..+.+ ++.+.++|+++|+. +..+.+|.+|||||||||+|||||+.+|+
T Consensus 80 GmVFQ~f--nLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~-~ka~~yP~qLSGGQqQRVAIARALaM~P~ 156 (240)
T COG1126 80 GMVFQQF--NLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLA-DKADAYPAQLSGGQQQRVAIARALAMDPK 156 (240)
T ss_pred Ceecccc--cccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCch-hhhhhCccccCcHHHHHHHHHHHHcCCCC
Confidence 9999985 578899999987542 12223 34567899999996 68899999999999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 416 FLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 416 lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
++++|||||+|||+.+..+.+.+++.
T Consensus 157 vmLFDEPTSALDPElv~EVL~vm~~L 182 (240)
T COG1126 157 VMLFDEPTSALDPELVGEVLDVMKDL 182 (240)
T ss_pred EEeecCCcccCCHHHHHHHHHHHHHH
Confidence 99999999999999999999888764
No 27
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.7e-38 Score=298.67 Aligned_cols=162 Identities=28% Similarity=0.455 Sum_probs=142.3
Q ss_pred CeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc------eEEEEeccC
Q psy208 275 PILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN------LKFGYFSQH 348 (443)
Q Consensus 275 ~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------~~ig~~~Q~ 348 (443)
.+++++++++.|+ ...+|+|+||+|.+||+++|+||+|||||||||+|+|+.+|++|+|.+.+. ..++|++|+
T Consensus 2 ~~l~i~~v~~~f~-~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ~ 80 (248)
T COG1116 2 ALLEIEGVSKSFG-GVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQE 80 (248)
T ss_pred ceEEEEeeEEEeC-ceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEecc
Confidence 4689999999996 478999999999999999999999999999999999999999999988653 479999998
Q ss_pred cccccccchhHHHHHHHhCC------CCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCC
Q psy208 349 HVDQLDMNLRCVQLLEAAFP------GKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEP 422 (443)
Q Consensus 349 ~~~~l~~~~~~~~~~~~~~~------~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEP 422 (443)
+ .+.+..|+.+++.-... ......+.++|+.+|+. +..+++|++|||||||||+|||||+.+|++|+||||
T Consensus 81 ~--~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~-~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEP 157 (248)
T COG1116 81 D--ALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLA-GFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEP 157 (248)
T ss_pred C--cccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCc-chhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 6 46778888888743211 11234688999999997 588999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHcc
Q psy208 423 TNHLDIETIEALGKAINK 440 (443)
Q Consensus 423 Tn~LD~~s~~~l~~~L~~ 440 (443)
+++||..++..+.+.|.+
T Consensus 158 FgALDalTR~~lq~~l~~ 175 (248)
T COG1116 158 FGALDALTREELQDELLR 175 (248)
T ss_pred cchhhHHHHHHHHHHHHH
Confidence 999999999999887754
No 28
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=1.2e-38 Score=304.58 Aligned_cols=163 Identities=31% Similarity=0.496 Sum_probs=138.8
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-----------eEEEE
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-----------LKFGY 344 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~ig~ 344 (443)
+|+++||+++|+ ++++++|+||+|++|++++|+||||||||||||+|+|+++|.+|+|.+++. ..++|
T Consensus 2 ~L~~~~ls~~y~-~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~ 80 (258)
T COG1120 2 MLEVENLSFGYG-GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAY 80 (258)
T ss_pred eeEEEEEEEEEC-CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEE
Confidence 689999999996 689999999999999999999999999999999999999999999998752 36999
Q ss_pred eccCcccccccchhHHHHHHH-h------CCCCC---HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCC
Q psy208 345 FSQHHVDQLDMNLRCVQLLEA-A------FPGKP---QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAP 414 (443)
Q Consensus 345 ~~Q~~~~~l~~~~~~~~~~~~-~------~~~~~---~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p 414 (443)
+||.+. .....++.+.+.. . +...+ .+.+...|+.+|+. +..++++.+|||||||||.|||||+++|
T Consensus 81 vpQ~~~--~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~-~la~r~~~~LSGGerQrv~iArALaQ~~ 157 (258)
T COG1120 81 VPQSPS--APFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLE-HLADRPVDELSGGERQRVLIARALAQET 157 (258)
T ss_pred eccCCC--CCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcH-HHhcCcccccChhHHHHHHHHHHHhcCC
Confidence 999863 3334455554432 1 11122 23567789999986 6889999999999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHcccc
Q psy208 415 NFLVLDEPTNHLDIETIEALGKAINKYT 442 (443)
Q Consensus 415 ~lLiLDEPTn~LD~~s~~~l~~~L~~~~ 442 (443)
++|+|||||++||+..+-.+++.++++.
T Consensus 158 ~iLLLDEPTs~LDi~~Q~evl~ll~~l~ 185 (258)
T COG1120 158 PILLLDEPTSHLDIAHQIEVLELLRDLN 185 (258)
T ss_pred CEEEeCCCccccCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998753
No 29
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=3e-38 Score=294.71 Aligned_cols=167 Identities=26% Similarity=0.421 Sum_probs=148.8
Q ss_pred CeEEEeeeEEEeCCCC---ceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcC------------c
Q psy208 275 PILQLSEVNFEYVPGK---PILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR------------N 339 (443)
Q Consensus 275 ~~l~~~~l~~~y~~~~---~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~------------~ 339 (443)
++|+++|+++.|+.++ +++++|||+|.+||++||+|++|||||||.++|+|+.+|++|+|.+++ .
T Consensus 2 ~~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~ 81 (252)
T COG1124 2 TLLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFY 81 (252)
T ss_pred ceEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhc
Confidence 5799999999997543 499999999999999999999999999999999999999999999875 2
Q ss_pred eEEEEeccCcccccccchhHHHHHHHhCC----CCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCC
Q psy208 340 LKFGYFSQHHVDQLDMNLRCVQLLEAAFP----GKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPN 415 (443)
Q Consensus 340 ~~ig~~~Q~~~~~l~~~~~~~~~~~~~~~----~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~ 415 (443)
..+.++||+|...+++..++...+..... ....+++.++|..+|+....++++|.+|||||+||++|||||..+|+
T Consensus 82 ~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~Pk 161 (252)
T COG1124 82 RPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPK 161 (252)
T ss_pred cceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCCC
Confidence 45889999998889988887777654322 12345688999999999999999999999999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 416 FLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 416 lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
+|||||||++||+..+..+.+.|.+.
T Consensus 162 lLIlDEptSaLD~siQa~IlnlL~~l 187 (252)
T COG1124 162 LLILDEPTSALDVSVQAQILNLLLEL 187 (252)
T ss_pred EEEecCchhhhcHHHHHHHHHHHHHH
Confidence 99999999999999999999998753
No 30
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.5e-37 Score=288.17 Aligned_cols=164 Identities=27% Similarity=0.435 Sum_probs=143.7
Q ss_pred CeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcC--------------ce
Q psy208 275 PILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR--------------NL 340 (443)
Q Consensus 275 ~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~--------------~~ 340 (443)
.+|+++||++.|++++.+|+||||+|++||+++|||++|||||||||+|.|+.+|++|+|.+.+ +.
T Consensus 2 ~~i~~~nl~k~yp~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~ 81 (258)
T COG3638 2 MMIEVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRR 81 (258)
T ss_pred ceEEEeeeeeecCCCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHH
Confidence 4799999999998788999999999999999999999999999999999999999999998864 24
Q ss_pred EEEEeccCcccccccchhHHHHHHH--------------hCCCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHH
Q psy208 341 KFGYFSQHHVDQLDMNLRCVQLLEA--------------AFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAF 406 (443)
Q Consensus 341 ~ig~~~Q~~~~~l~~~~~~~~~~~~--------------~~~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~l 406 (443)
.+||++|.+ .+-+..++++++.. .++......+...|+++|+. +.+.++.++|||||+|||+|
T Consensus 82 ~iGmIfQ~~--nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~-~~A~qra~~LSGGQQQRVaI 158 (258)
T COG3638 82 DIGMIFQQF--NLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGIL-DKAYQRASTLSGGQQQRVAI 158 (258)
T ss_pred hceeEeccC--CcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcH-HHHHHHhccCCcchhHHHHH
Confidence 699999986 46666777776542 12233345677889999996 67889999999999999999
Q ss_pred HHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 407 ARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 407 A~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
||||+++|+++|.|||++.|||.+.+.+++.|++.
T Consensus 159 ARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~i 193 (258)
T COG3638 159 ARALVQQPKIILADEPVASLDPESAKKVMDILKDI 193 (258)
T ss_pred HHHHhcCCCEEecCCcccccChhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999764
No 31
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=4.3e-37 Score=288.54 Aligned_cols=164 Identities=30% Similarity=0.453 Sum_probs=140.5
Q ss_pred eEEEeeeEEEeCCC---CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcC--------------
Q psy208 276 ILQLSEVNFEYVPG---KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR-------------- 338 (443)
Q Consensus 276 ~l~~~~l~~~y~~~---~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-------------- 338 (443)
+++++||++.|..+ ..+|+++||+|++||+++|+||+||||||||++|.|+.+|++|.|.+.+
T Consensus 1 ~i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~ 80 (226)
T COG1136 1 MIELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKL 80 (226)
T ss_pred CcEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHH
Confidence 46899999999643 3699999999999999999999999999999999999999999988764
Q ss_pred -ceEEEEeccCcccccccchhHHHHHHH--hCCCC----CHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhc
Q psy208 339 -NLKFGYFSQHHVDQLDMNLRCVQLLEA--AFPGK----PQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCM 411 (443)
Q Consensus 339 -~~~ig~~~Q~~~~~l~~~~~~~~~~~~--~~~~~----~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~ 411 (443)
+..+||++|+. .+-+..|+.+++.- .+... ....+..++..+|+.....+++|.+|||||||||+|||||+
T Consensus 81 R~~~iGfvFQ~~--nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~ 158 (226)
T COG1136 81 RRKKIGFVFQNF--NLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALI 158 (226)
T ss_pred HHHhEEEECccC--CCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHh
Confidence 24699999985 46677888888752 22222 23456778888999755555899999999999999999999
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 412 AAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 412 ~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
.+|++|+.||||.+||.++.+.+.+.|.++
T Consensus 159 ~~P~iilADEPTgnLD~~t~~~V~~ll~~~ 188 (226)
T COG1136 159 NNPKIILADEPTGNLDSKTAKEVLELLREL 188 (226)
T ss_pred cCCCeEEeeCccccCChHHHHHHHHHHHHH
Confidence 999999999999999999999999999875
No 32
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=2.6e-37 Score=277.62 Aligned_cols=164 Identities=27% Similarity=0.387 Sum_probs=143.7
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcC--------------ceE
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR--------------NLK 341 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~--------------~~~ 341 (443)
||+++||++.|++++++|+||||+|++||++-|+||+|||||||||+|++..+|+.|+|++.+ +.+
T Consensus 1 mI~f~~V~k~Y~~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~ 80 (223)
T COG2884 1 MIRFENVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQ 80 (223)
T ss_pred CeeehhhhhhcCCCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhhe
Confidence 589999999999887899999999999999999999999999999999999999999998753 246
Q ss_pred EEEeccCcccccccchhHHHHHHHh--CCCC----CHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCC
Q psy208 342 FGYFSQHHVDQLDMNLRCVQLLEAA--FPGK----PQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPN 415 (443)
Q Consensus 342 ig~~~Q~~~~~l~~~~~~~~~~~~~--~~~~----~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~ 415 (443)
||+++|+. .+-+..+++++++.. ..+. ...++.+.|+.+|+. +..+..|.+|||||||||+||||++.+|.
T Consensus 81 IGvVFQD~--rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~-~k~~~lP~~LSGGEQQRvaIARAiV~~P~ 157 (223)
T COG2884 81 IGVVFQDF--RLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLK-HKARALPSQLSGGEQQRVAIARAIVNQPA 157 (223)
T ss_pred eeeEeeec--cccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccc-hhhhcCccccCchHHHHHHHHHHHccCCC
Confidence 99999986 456678888887532 1222 245677889999996 57788999999999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHcccc
Q psy208 416 FLVLDEPTNHLDIETIEALGKAINKYT 442 (443)
Q Consensus 416 lLiLDEPTn~LD~~s~~~l~~~L~~~~ 442 (443)
+||.||||.+|||+....+++.+.+++
T Consensus 158 vLlADEPTGNLDp~~s~~im~lfeein 184 (223)
T COG2884 158 VLLADEPTGNLDPDLSWEIMRLFEEIN 184 (223)
T ss_pred eEeecCCCCCCChHHHHHHHHHHHHHh
Confidence 999999999999999999999987764
No 33
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=1.6e-36 Score=286.76 Aligned_cols=163 Identities=30% Similarity=0.458 Sum_probs=137.1
Q ss_pred eEEEeeeEEEeCCC-CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc--------------e
Q psy208 276 ILQLSEVNFEYVPG-KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN--------------L 340 (443)
Q Consensus 276 ~l~~~~l~~~y~~~-~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~--------------~ 340 (443)
+|+++|++++|+++ +++|+++||+|.+|++++|+||||||||||+|+|+|+++|++|+|.+.+. .
T Consensus 1 ~l~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (216)
T TIGR00960 1 MIRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRR 80 (216)
T ss_pred CeEEEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHH
Confidence 47899999999643 46999999999999999999999999999999999999999999987541 2
Q ss_pred EEEEeccCcccccccchhHHHHHHHh--CCCC----CHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCC
Q psy208 341 KFGYFSQHHVDQLDMNLRCVQLLEAA--FPGK----PQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAP 414 (443)
Q Consensus 341 ~ig~~~Q~~~~~l~~~~~~~~~~~~~--~~~~----~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p 414 (443)
.++|++|++. +....++.+++... .... ....+.+++..+|+. +..++++.+|||||||||+||+||+.+|
T Consensus 81 ~i~~~~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~laral~~~p 157 (216)
T TIGR00960 81 HIGMVFQDHR--LLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLE-GKAHALPMQLSGGEQQRVAIARAIVHKP 157 (216)
T ss_pred hceEEecCcc--ccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCh-hhhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 5899999863 34445666665421 1111 234577889999986 5678899999999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 415 NFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 415 ~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
++|||||||++||+.+++.+.+.|.++
T Consensus 158 ~llllDEPt~~LD~~~~~~l~~~l~~~ 184 (216)
T TIGR00960 158 PLLLADEPTGNLDPELSRDIMRLFEEF 184 (216)
T ss_pred CEEEEeCCCCcCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999875
No 34
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.8e-37 Score=294.23 Aligned_cols=163 Identities=31% Similarity=0.402 Sum_probs=141.5
Q ss_pred eEEEeeeEEEeCCC----CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcC-------------
Q psy208 276 ILQLSEVNFEYVPG----KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR------------- 338 (443)
Q Consensus 276 ~l~~~~l~~~y~~~----~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~------------- 338 (443)
||++++|+|.|+.. ..+++||||+|++||++||||.+|||||||+|+|.++..|++|+|.+++
T Consensus 1 mI~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~ 80 (339)
T COG1135 1 MIELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQ 80 (339)
T ss_pred CeEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHH
Confidence 58999999999742 4699999999999999999999999999999999999999999999865
Q ss_pred -ceEEEEeccCcccccccchhHHHHHHHh--CCCC----CHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhc
Q psy208 339 -NLKFGYFSQHHVDQLDMNLRCVQLLEAA--FPGK----PQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCM 411 (443)
Q Consensus 339 -~~~ig~~~Q~~~~~l~~~~~~~~~~~~~--~~~~----~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~ 411 (443)
+.+||++||++ .+-...|++++++.. ..+. ..+++.++|+.+|+. +..+++|.+|||||||||+|||||+
T Consensus 81 ~R~~IGMIFQhF--nLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~-dk~~~yP~qLSGGQKQRVaIARALa 157 (339)
T COG1135 81 LRQKIGMIFQHF--NLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLS-DKADRYPAQLSGGQKQRVAIARALA 157 (339)
T ss_pred HHhhccEEeccc--cccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCCh-hhhccCchhcCcchhhHHHHHHHHh
Confidence 24699999986 355567888776421 1122 235677899999997 7889999999999999999999999
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 412 AAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 412 ~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
.+|++||+|||||+|||++.+.+.+.|++.
T Consensus 158 ~~P~iLL~DEaTSALDP~TT~sIL~LL~~I 187 (339)
T COG1135 158 NNPKILLCDEATSALDPETTQSILELLKDI 187 (339)
T ss_pred cCCCEEEecCccccCChHHHHHHHHHHHHH
Confidence 999999999999999999999999999764
No 35
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=1.8e-36 Score=281.76 Aligned_cols=165 Identities=28% Similarity=0.444 Sum_probs=143.3
Q ss_pred CCeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc--------------
Q psy208 274 PPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-------------- 339 (443)
Q Consensus 274 ~~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-------------- 339 (443)
.++|++++|+++|+ ++.+++|+||+|++|++++|+||+|||||||||+|.|+++|++|+|.+.+.
T Consensus 6 ~~~I~vr~v~~~fG-~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir 84 (263)
T COG1127 6 EPLIEVRGVTKSFG-DRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIR 84 (263)
T ss_pred cceEEEeeeeeecC-CEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHH
Confidence 46899999999995 688999999999999999999999999999999999999999999988641
Q ss_pred eEEEEeccCcccccccchhHHHHHHH---hCCCCCHHHH----HHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhcc
Q psy208 340 LKFGYFSQHHVDQLDMNLRCVQLLEA---AFPGKPQEEY----RRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMA 412 (443)
Q Consensus 340 ~~ig~~~Q~~~~~l~~~~~~~~~~~~---~~~~~~~~~~----~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~ 412 (443)
.++|+++|.. .+....++.+++.- .....++..+ ..-|+.+|+.+...++.|++|||||++|++||||++.
T Consensus 85 ~r~GvlFQ~g--ALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAial 162 (263)
T COG1127 85 KRMGVLFQQG--ALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIAL 162 (263)
T ss_pred hheeEEeecc--ccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhc
Confidence 3599999985 46677888888753 2233344443 3457889999887999999999999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 413 APNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 413 ~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
+|++|++||||+||||.+...+.+.|++.
T Consensus 163 dPell~~DEPtsGLDPI~a~~~~~LI~~L 191 (263)
T COG1127 163 DPELLFLDEPTSGLDPISAGVIDELIREL 191 (263)
T ss_pred CCCEEEecCCCCCCCcchHHHHHHHHHHH
Confidence 99999999999999999999999888764
No 36
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=3.3e-36 Score=297.25 Aligned_cols=165 Identities=31% Similarity=0.456 Sum_probs=142.3
Q ss_pred CeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcC----------ceEEEE
Q psy208 275 PILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR----------NLKFGY 344 (443)
Q Consensus 275 ~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~----------~~~ig~ 344 (443)
.+++++||++.|++++.+|+||||+|++|+++||+||||||||||+|+|+|++.|++|+|.+.+ ...+||
T Consensus 3 ~~i~~~~l~k~~~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~igy 82 (293)
T COG1131 3 EVIEVRNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGY 82 (293)
T ss_pred ceeeecceEEEeCCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheEE
Confidence 3588999999996347899999999999999999999999999999999999999999998864 135999
Q ss_pred eccCcccccccchhHHHHHH---HhCCC---CCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEE
Q psy208 345 FSQHHVDQLDMNLRCVQLLE---AAFPG---KPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLV 418 (443)
Q Consensus 345 ~~Q~~~~~l~~~~~~~~~~~---~~~~~---~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLi 418 (443)
++|++. +.+..|+.+++. ..+.. ...+.+..++..+|+.. ..+++++.||+||||||.||+||+.+|++||
T Consensus 83 ~~~~~~--~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~~lS~G~kqrl~ia~aL~~~P~lli 159 (293)
T COG1131 83 VPQEPS--LYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLED-KANKKVRTLSGGMKQRLSIALALLHDPELLI 159 (293)
T ss_pred EccCCC--CCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCch-hhCcchhhcCHHHHHHHHHHHHHhcCCCEEE
Confidence 999874 566777766653 22222 12457889999999986 4478899999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHcccc
Q psy208 419 LDEPTNHLDIETIEALGKAINKYT 442 (443)
Q Consensus 419 LDEPTn~LD~~s~~~l~~~L~~~~ 442 (443)
|||||||||+.++..+.+.|+++.
T Consensus 160 LDEPt~GLDp~~~~~~~~~l~~l~ 183 (293)
T COG1131 160 LDEPTSGLDPESRREIWELLRELA 183 (293)
T ss_pred ECCCCcCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999998763
No 37
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=4e-36 Score=281.92 Aligned_cols=162 Identities=31% Similarity=0.453 Sum_probs=136.0
Q ss_pred EEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc--------eEEEEeccCc
Q psy208 278 QLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN--------LKFGYFSQHH 349 (443)
Q Consensus 278 ~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~--------~~ig~~~Q~~ 349 (443)
+++|++++|++++++|+++||+|.+|++++|+|||||||||||++|+|+++|++|+|.+.+. ..++|++|++
T Consensus 1 ~~~~l~~~~~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~~ 80 (205)
T cd03226 1 RIENISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQDV 80 (205)
T ss_pred CcccEEEEeCCcCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEecCh
Confidence 36899999963267999999999999999999999999999999999999999999988652 2589999985
Q ss_pred ccccccchhHHHHHHHhC--CCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCC
Q psy208 350 VDQLDMNLRCVQLLEAAF--PGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD 427 (443)
Q Consensus 350 ~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD 427 (443)
...+. ..++.+++.... .......+.++++.+++. +..++++.+||||||||++|||+++.+|++|||||||++||
T Consensus 81 ~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD 158 (205)
T cd03226 81 DYQLF-TDSVREELLLGLKELDAGNEQAETVLKDLDLY-ALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLD 158 (205)
T ss_pred hhhhh-hccHHHHHhhhhhhcCccHHHHHHHHHHcCCc-hhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCC
Confidence 32222 346666664321 122335678899999996 56789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHccc
Q psy208 428 IETIEALGKAINKY 441 (443)
Q Consensus 428 ~~s~~~l~~~L~~~ 441 (443)
+.+++.+.+.|.++
T Consensus 159 ~~~~~~l~~~l~~~ 172 (205)
T cd03226 159 YKNMERVGELIREL 172 (205)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999999876
No 38
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.5e-36 Score=287.73 Aligned_cols=166 Identities=33% Similarity=0.449 Sum_probs=141.6
Q ss_pred CeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcC------------ceEE
Q psy208 275 PILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR------------NLKF 342 (443)
Q Consensus 275 ~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~------------~~~i 342 (443)
+++.++|++|+|+++.++++++||+|.+|++++|+|+||||||||+++|+|+++|++|.|.+.+ ..++
T Consensus 2 ~~i~~~~l~~~y~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~v 81 (235)
T COG1122 2 RMIEAENLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKV 81 (235)
T ss_pred ceEEEEEEEEEcCCCceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcce
Confidence 4789999999997656899999999999999999999999999999999999999999997654 2359
Q ss_pred EEeccCcccccccchhHHHHHHHhC--CCCC----HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCe
Q psy208 343 GYFSQHHVDQLDMNLRCVQLLEAAF--PGKP----QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNF 416 (443)
Q Consensus 343 g~~~Q~~~~~l~~~~~~~~~~~~~~--~~~~----~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~l 416 (443)
||++|+|..++.. .++.+.+.-.. .+.. +.++..+|..+|+. +..++++..|||||||||+||.+|+.+|++
T Consensus 82 G~VfQnpd~q~~~-~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~-~~~~r~p~~LSGGqkqRvaIA~vLa~~P~i 159 (235)
T COG1122 82 GLVFQNPDDQLFG-PTVEDEVAFGLENLGLPREEIEERVAEALELVGLE-ELLDRPPFNLSGGQKQRVAIAGVLAMGPEI 159 (235)
T ss_pred EEEEECccccccc-CcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCch-hhccCCccccCCcceeeHHhhHHHHcCCCE
Confidence 9999999766543 45555543211 1122 34577889999997 468999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHcccc
Q psy208 417 LVLDEPTNHLDIETIEALGKAINKYT 442 (443)
Q Consensus 417 LiLDEPTn~LD~~s~~~l~~~L~~~~ 442 (443)
|||||||++||+.++..+.+.+.+++
T Consensus 160 liLDEPta~LD~~~~~~l~~~l~~L~ 185 (235)
T COG1122 160 LLLDEPTAGLDPKGRRELLELLKKLK 185 (235)
T ss_pred EEEcCCCCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999998764
No 39
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=100.00 E-value=7.4e-36 Score=289.85 Aligned_cols=164 Identities=28% Similarity=0.393 Sum_probs=140.4
Q ss_pred CCeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc------eEEEEecc
Q psy208 274 PPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN------LKFGYFSQ 347 (443)
Q Consensus 274 ~~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------~~ig~~~Q 347 (443)
.++|+++||+++|+ ++++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++. ..++|++|
T Consensus 10 ~~~l~i~~l~~~~~-~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~q 88 (257)
T PRK11247 10 GTPLLLNAVSKRYG-ERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMFQ 88 (257)
T ss_pred CCcEEEEEEEEEEC-CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEEec
Confidence 46799999999996 468999999999999999999999999999999999999999999987542 35899999
Q ss_pred CcccccccchhHHHHHHHhCCCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCC
Q psy208 348 HHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD 427 (443)
Q Consensus 348 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD 427 (443)
++. +....++.+++...........+..++..+++. +..++++.+||||||||++||++|+.+|++|||||||++||
T Consensus 89 ~~~--l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD 165 (257)
T PRK11247 89 DAR--LLPWKKVIDNVGLGLKGQWRDAALQALAAVGLA-DRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALD 165 (257)
T ss_pred Ccc--CCCCCcHHHHHHhcccchHHHHHHHHHHHcCCh-hHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCC
Confidence 863 344457777765322222245677889999996 46788999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHccc
Q psy208 428 IETIEALGKAINKY 441 (443)
Q Consensus 428 ~~s~~~l~~~L~~~ 441 (443)
+.++..+.+.|.++
T Consensus 166 ~~~~~~l~~~L~~~ 179 (257)
T PRK11247 166 ALTRIEMQDLIESL 179 (257)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998764
No 40
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=100.00 E-value=2.5e-36 Score=284.86 Aligned_cols=163 Identities=32% Similarity=0.547 Sum_probs=136.3
Q ss_pred EEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcC------ceEEEEeccCccc
Q psy208 278 QLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR------NLKFGYFSQHHVD 351 (443)
Q Consensus 278 ~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~------~~~ig~~~Q~~~~ 351 (443)
+++||+++|+ ++++|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++ ...++|++|++..
T Consensus 1 ~~~~l~~~~~-~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~~ 79 (213)
T cd03235 1 EVEDLTVSYG-GHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQRRSI 79 (213)
T ss_pred CcccceeEEC-CEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHHHHhheEEecccccc
Confidence 3689999996 46799999999999999999999999999999999999999999999865 2459999998642
Q ss_pred ccccchhHHHHHHHhCCC----------CCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeC
Q psy208 352 QLDMNLRCVQLLEAAFPG----------KPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDE 421 (443)
Q Consensus 352 ~l~~~~~~~~~~~~~~~~----------~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDE 421 (443)
......++.+++...... ...+.+..++..+++. +..++++.+||||||||++||+||+.+|++|||||
T Consensus 80 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDE 158 (213)
T cd03235 80 DRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLS-ELADRQIGELSGGQQQRVLLARALVQDPDLLLLDE 158 (213)
T ss_pred ccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCH-HHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 212235677776432110 1134567889999996 56789999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHcccc
Q psy208 422 PTNHLDIETIEALGKAINKYT 442 (443)
Q Consensus 422 PTn~LD~~s~~~l~~~L~~~~ 442 (443)
||++||+.+++.+.+.|.++.
T Consensus 159 Pt~~LD~~~~~~l~~~l~~~~ 179 (213)
T cd03235 159 PFAGVDPKTQEDIYELLRELR 179 (213)
T ss_pred CcccCCHHHHHHHHHHHHHHH
Confidence 999999999999999998763
No 41
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=100.00 E-value=4.6e-36 Score=283.16 Aligned_cols=163 Identities=29% Similarity=0.430 Sum_probs=136.6
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc--------------eE
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN--------------LK 341 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~--------------~~ 341 (443)
+|+++|++++|++++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+.+. ..
T Consensus 1 ~l~~~~l~~~~~~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (214)
T TIGR02673 1 MIEFHNVSKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRR 80 (214)
T ss_pred CEEEEeeeEEeCCCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhh
Confidence 4789999999953467999999999999999999999999999999999999999999987531 25
Q ss_pred EEEeccCcccccccchhHHHHHHHh--CCCC----CHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCC
Q psy208 342 FGYFSQHHVDQLDMNLRCVQLLEAA--FPGK----PQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPN 415 (443)
Q Consensus 342 ig~~~Q~~~~~l~~~~~~~~~~~~~--~~~~----~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~ 415 (443)
++|++|++. +....++.+++... .... ....+..+++.+++. +..++++.+|||||||||+||++|+.+|+
T Consensus 81 i~~~~q~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrl~la~al~~~p~ 157 (214)
T TIGR02673 81 IGVVFQDFR--LLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLE-HKADAFPEQLSGGEQQRVAIARAIVNSPP 157 (214)
T ss_pred eEEEecChh--hccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh-hhhhCChhhCCHHHHHHHHHHHHHhCCCC
Confidence 899999863 33445666655421 1111 134567889999996 46788999999999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 416 FLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 416 lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
+|||||||++||+.++..+.+.|.++
T Consensus 158 lllLDEPt~~LD~~~~~~l~~~l~~~ 183 (214)
T TIGR02673 158 LLLADEPTGNLDPDLSERILDLLKRL 183 (214)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999875
No 42
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=100.00 E-value=3.3e-36 Score=316.29 Aligned_cols=163 Identities=39% Similarity=0.626 Sum_probs=139.8
Q ss_pred CeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCceEEEEeccCcccccc
Q psy208 275 PILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLD 354 (443)
Q Consensus 275 ~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ig~~~Q~~~~~l~ 354 (443)
.+|+++|++++|+ ++++|+++||+|.+|+++||||+||||||||||+|+|.+.|++|+|....+.+++|++|++. ++
T Consensus 2 ~~i~~~~ls~~~g-~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~~~v~~l~Q~~~--~~ 78 (530)
T COG0488 2 SMITLENLSLAYG-DRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYLSQEPP--LD 78 (530)
T ss_pred ceEEEeeeEEeeC-CceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCCceEEEeCCCCC--cC
Confidence 4799999999994 68999999999999999999999999999999999999999999999999899999999874 33
Q ss_pred cchhHHHHHHHhC-----------------------------------C-CCCHHHHHHHHhcCCCChhhhhccCCCCCH
Q psy208 355 MNLRCVQLLEAAF-----------------------------------P-GKPQEEYRRQLGGFGVSGDLALQFVGSLSG 398 (443)
Q Consensus 355 ~~~~~~~~~~~~~-----------------------------------~-~~~~~~~~~~L~~~gl~~~~~~~~~~~LSg 398 (443)
...++.+.+.... . ...+.++..+|..+|++.. ++++++|||
T Consensus 79 ~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~--~~~~~~LSG 156 (530)
T COG0488 79 PEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE--DRPVSSLSG 156 (530)
T ss_pred CCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc--cCchhhcCH
Confidence 3333333221100 0 0123567788899999754 899999999
Q ss_pred HHHHHHHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHcccc
Q psy208 399 GQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKYT 442 (443)
Q Consensus 399 GekqRl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~~ 442 (443)
|||.||+||++|+.+|++|||||||||||.+++.+|++.|.+|+
T Consensus 157 G~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~~ 200 (530)
T COG0488 157 GWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRYP 200 (530)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999886
No 43
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.6e-36 Score=283.80 Aligned_cols=161 Identities=29% Similarity=0.429 Sum_probs=135.5
Q ss_pred EEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc---------eEEEEecc
Q psy208 277 LQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN---------LKFGYFSQ 347 (443)
Q Consensus 277 l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~---------~~ig~~~Q 347 (443)
|+++|++++|+ ++++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+. ..++|++|
T Consensus 1 l~~~~l~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q 79 (213)
T cd03259 1 LELKGLSKTYG-SVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMVFQ 79 (213)
T ss_pred CeeeeeEEEeC-CeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEEcC
Confidence 47899999996 468999999999999999999999999999999999999999999987542 25899999
Q ss_pred CcccccccchhHHHHHHHh--CCCC----CHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeC
Q psy208 348 HHVDQLDMNLRCVQLLEAA--FPGK----PQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDE 421 (443)
Q Consensus 348 ~~~~~l~~~~~~~~~~~~~--~~~~----~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDE 421 (443)
++. +....++.+++... .... ..+.+.+++..+++. +..++++.+||||||||++||++|+.+|++|||||
T Consensus 80 ~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDE 156 (213)
T cd03259 80 DYA--LFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLE-GLLNRYPHELSGGQQQRVALARALAREPSLLLLDE 156 (213)
T ss_pred chh--hccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCh-hhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 863 34445666665321 1111 123567889999996 56788999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHccc
Q psy208 422 PTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 422 PTn~LD~~s~~~l~~~L~~~ 441 (443)
||++||+.++..+.+.|.++
T Consensus 157 Pt~~LD~~~~~~l~~~l~~~ 176 (213)
T cd03259 157 PLSALDAKLREELREELKEL 176 (213)
T ss_pred CcccCCHHHHHHHHHHHHHH
Confidence 99999999999999999765
No 44
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=8.2e-36 Score=282.22 Aligned_cols=162 Identities=31% Similarity=0.457 Sum_probs=135.4
Q ss_pred EEEeeeEEEeCCC---CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcC---------------
Q psy208 277 LQLSEVNFEYVPG---KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR--------------- 338 (443)
Q Consensus 277 l~~~~l~~~y~~~---~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~--------------- 338 (443)
|+++||+++|++. +++|+++||+|++|++++|+||||||||||+|+|+|+++|++|+|.+.+
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 4789999999642 5799999999999999999999999999999999999999999998753
Q ss_pred ceEEEEeccCcccccccchhHHHHHHHh--CCCC----CHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhcc
Q psy208 339 NLKFGYFSQHHVDQLDMNLRCVQLLEAA--FPGK----PQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMA 412 (443)
Q Consensus 339 ~~~ig~~~Q~~~~~l~~~~~~~~~~~~~--~~~~----~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~ 412 (443)
...++|++|++. +....++.+++... .... ....+..++..+|+. ...++++.+|||||||||+||++|+.
T Consensus 81 ~~~i~~~~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~la~al~~ 157 (218)
T cd03255 81 RRHIGFVFQSFN--LLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLG-DRLNHYPSELSGGQQQRVAIARALAN 157 (218)
T ss_pred hhcEEEEeeccc--cCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCc-hhhhcChhhcCHHHHHHHHHHHHHcc
Confidence 125899999863 33445666665421 1111 124567889999996 45688999999999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 413 APNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 413 ~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
+|++|||||||++||+.+++.+.+.|.++
T Consensus 158 ~p~lllLDEP~~~LD~~~~~~l~~~l~~~ 186 (218)
T cd03255 158 DPKIILADEPTGNLDSETGKEVMELLREL 186 (218)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999875
No 45
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9.3e-36 Score=285.25 Aligned_cols=161 Identities=27% Similarity=0.422 Sum_probs=135.3
Q ss_pred EEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcC--------------ceEE
Q psy208 277 LQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR--------------NLKF 342 (443)
Q Consensus 277 l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~--------------~~~i 342 (443)
|+++|++++|+ ++++|+|+||+|.+|++++|+||||||||||+|+|+|+++|++|+|.+.+ ...+
T Consensus 1 l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i 79 (235)
T cd03261 1 IELRGLTKSFG-GRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRM 79 (235)
T ss_pred CeEEEEEEEEC-CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcce
Confidence 47899999996 56799999999999999999999999999999999999999999998753 1248
Q ss_pred EEeccCcccccccchhHHHHHHHh---CCCCC----HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCC
Q psy208 343 GYFSQHHVDQLDMNLRCVQLLEAA---FPGKP----QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPN 415 (443)
Q Consensus 343 g~~~Q~~~~~l~~~~~~~~~~~~~---~~~~~----~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~ 415 (443)
+|++|++. +....++.+++... ..... ...+..++..+++. +..++++.+|||||||||+||++|+.+|+
T Consensus 80 ~~v~q~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~ia~al~~~p~ 156 (235)
T cd03261 80 GMLFQSGA--LFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLR-GAEDLYPAELSGGMKKRVALARALALDPE 156 (235)
T ss_pred EEEccCcc--cCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCc-hhhcCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 99999863 34455666665421 11112 23467789999996 45688999999999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 416 FLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 416 lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
+|||||||++||+.+++.+.+.|.++
T Consensus 157 llllDEPt~~LD~~~~~~l~~~l~~~ 182 (235)
T cd03261 157 LLLYDEPTAGLDPIASGVIDDLIRSL 182 (235)
T ss_pred EEEecCCcccCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999765
No 46
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-35 Score=284.28 Aligned_cols=165 Identities=27% Similarity=0.435 Sum_probs=138.2
Q ss_pred CCeEEEeeeEEEeCCC---CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-----------
Q psy208 274 PPILQLSEVNFEYVPG---KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN----------- 339 (443)
Q Consensus 274 ~~~l~~~~l~~~y~~~---~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~----------- 339 (443)
.++|+++||++.|+++ +++|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++.
T Consensus 3 ~~~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~ 82 (233)
T PRK11629 3 KILLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKA 82 (233)
T ss_pred CceEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHH
Confidence 3579999999999632 46999999999999999999999999999999999999999999987531
Q ss_pred ----eEEEEeccCcccccccchhHHHHHHHh--CCCC----CHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHH
Q psy208 340 ----LKFGYFSQHHVDQLDMNLRCVQLLEAA--FPGK----PQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARM 409 (443)
Q Consensus 340 ----~~ig~~~Q~~~~~l~~~~~~~~~~~~~--~~~~----~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~a 409 (443)
..++|++|++. +....++.+++... +... ....+.+++..+|+. +..++++.+||||||||++||++
T Consensus 83 ~~~~~~i~~v~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgG~~qrl~la~a 159 (233)
T PRK11629 83 ELRNQKLGFIYQFHH--LLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLE-HRANHRPSELSGGERQRVAIARA 159 (233)
T ss_pred HHHhccEEEEecCcc--cCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc-hhhhCChhhCCHHHHHHHHHHHH
Confidence 35999999863 34445666665421 1111 123567889999996 56788999999999999999999
Q ss_pred hccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 410 CMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 410 l~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
++.+|++|||||||++||+.+++.+.+.|.++
T Consensus 160 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~ 191 (233)
T PRK11629 160 LVNNPRLVLADEPTGNLDARNADSIFQLLGEL 191 (233)
T ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999765
No 47
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=2.1e-36 Score=282.81 Aligned_cols=163 Identities=29% Similarity=0.423 Sum_probs=143.8
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcC-----------ceEEEE
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR-----------NLKFGY 344 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~ig~ 344 (443)
||+++||||.|+ ++.+++|+||+|.+|++++++||+||||||+||||.+++.|++|+|.+++ +.+|||
T Consensus 1 MI~~~nvsk~y~-~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGY 79 (309)
T COG1125 1 MIEFENVSKRYG-NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGY 79 (309)
T ss_pred CceeeeeehhcC-CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhh
Confidence 589999999996 67899999999999999999999999999999999999999999999864 246999
Q ss_pred eccCcccccccchhHHHHHHHh--CCCCC----HHHHHHHHhcCCCCh-hhhhccCCCCCHHHHHHHHHHHHhccCCCeE
Q psy208 345 FSQHHVDQLDMNLRCVQLLEAA--FPGKP----QEEYRRQLGGFGVSG-DLALQFVGSLSGGQKSRVAFARMCMAAPNFL 417 (443)
Q Consensus 345 ~~Q~~~~~l~~~~~~~~~~~~~--~~~~~----~~~~~~~L~~~gl~~-~~~~~~~~~LSgGekqRl~lA~al~~~p~lL 417 (443)
+-|.. .+.+..|+.+++.-. ..+++ .+++.++|..+|+.+ ++.+++|++|||||+|||.+||||+.+|++|
T Consensus 80 viQqi--gLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~il 157 (309)
T COG1125 80 VIQQI--GLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPIL 157 (309)
T ss_pred hhhhc--ccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeE
Confidence 99975 477888888887532 22333 346788999999976 6899999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHccc
Q psy208 418 VLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 418 iLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
++|||+++|||.++..|.+.+.+.
T Consensus 158 LMDEPFgALDpI~R~~lQ~e~~~l 181 (309)
T COG1125 158 LMDEPFGALDPITRKQLQEEIKEL 181 (309)
T ss_pred eecCCccccChhhHHHHHHHHHHH
Confidence 999999999999999999887653
No 48
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-35 Score=281.95 Aligned_cols=162 Identities=31% Similarity=0.446 Sum_probs=135.6
Q ss_pred EEEeeeEEEeCCC---CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcC------ceEEEEecc
Q psy208 277 LQLSEVNFEYVPG---KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR------NLKFGYFSQ 347 (443)
Q Consensus 277 l~~~~l~~~y~~~---~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~------~~~ig~~~Q 347 (443)
|+++|++++|++. +++|+++||+|++|++++|+||||||||||+|+|+|+++|++|+|.+.+ ...++|++|
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~q 80 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVFQ 80 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEEEEec
Confidence 4789999999632 5799999999999999999999999999999999999999999998854 236899999
Q ss_pred CcccccccchhHHHHHHHh--CCCC----CHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeC
Q psy208 348 HHVDQLDMNLRCVQLLEAA--FPGK----PQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDE 421 (443)
Q Consensus 348 ~~~~~l~~~~~~~~~~~~~--~~~~----~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDE 421 (443)
++. +....++.+++... .... ....+..++..+++. +..++++..||||||||++||+||+.+|++|||||
T Consensus 81 ~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDE 157 (220)
T cd03293 81 QDA--LLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLS-GFENAYPHQLSGGMRQRVALARALAVDPDVLLLDE 157 (220)
T ss_pred ccc--cccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh-hhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEECC
Confidence 863 33445666655321 1111 134567889999996 56788999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHccc
Q psy208 422 PTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 422 PTn~LD~~s~~~l~~~L~~~ 441 (443)
||++||+.+++.+.+.|.++
T Consensus 158 Pt~~LD~~~~~~~~~~l~~~ 177 (220)
T cd03293 158 PFSALDALTREQLQEELLDI 177 (220)
T ss_pred CCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999764
No 49
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=100.00 E-value=2.6e-35 Score=285.11 Aligned_cols=164 Identities=29% Similarity=0.493 Sum_probs=139.0
Q ss_pred CeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCceEEEEeccCcccccc
Q psy208 275 PILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLD 354 (443)
Q Consensus 275 ~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ig~~~Q~~~~~l~ 354 (443)
++|+++||+++|+ ++++|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.....++|++|++.....
T Consensus 3 ~~l~~~~l~~~~~-~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~~~i~~v~q~~~~~~~ 81 (251)
T PRK09544 3 SLVSLENVSVSFG-QRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQKLYLDTT 81 (251)
T ss_pred cEEEEeceEEEEC-CceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCccCEEEeccccccccc
Confidence 4799999999996 467999999999999999999999999999999999999999999998876789999998632222
Q ss_pred cchhHHHHHHHhCCCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCCHHHHHHH
Q psy208 355 MNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEAL 434 (443)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l 434 (443)
...++.+++.. .+......+..+++.+++. +..++++..||||||||++||++++.+|++|||||||++||+.++..+
T Consensus 82 l~~~~~~~~~~-~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l 159 (251)
T PRK09544 82 LPLTVNRFLRL-RPGTKKEDILPALKRVQAG-HLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVAL 159 (251)
T ss_pred cChhHHHHHhc-cccccHHHHHHHHHHcCCh-HHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHH
Confidence 22344444321 2223456678889999986 567889999999999999999999999999999999999999999999
Q ss_pred HHHHccc
Q psy208 435 GKAINKY 441 (443)
Q Consensus 435 ~~~L~~~ 441 (443)
.+.|.++
T Consensus 160 ~~~L~~~ 166 (251)
T PRK09544 160 YDLIDQL 166 (251)
T ss_pred HHHHHHH
Confidence 9998764
No 50
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.2e-35 Score=281.62 Aligned_cols=161 Identities=28% Similarity=0.368 Sum_probs=135.8
Q ss_pred EEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc----------eEEEEec
Q psy208 277 LQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN----------LKFGYFS 346 (443)
Q Consensus 277 l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~----------~~ig~~~ 346 (443)
|+++|++++|+ ++++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+. ..++|++
T Consensus 1 i~~~~~~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~ 79 (220)
T cd03265 1 IEVENLVKKYG-DFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIVF 79 (220)
T ss_pred CEEEEEEEEEC-CEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEEec
Confidence 57899999996 468999999999999999999999999999999999999999999987541 2589999
Q ss_pred cCcccccccchhHHHHHHH--hCCCC----CHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEe
Q psy208 347 QHHVDQLDMNLRCVQLLEA--AFPGK----PQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLD 420 (443)
Q Consensus 347 Q~~~~~l~~~~~~~~~~~~--~~~~~----~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLD 420 (443)
|++. +....++.+++.. ..... ..+.+..+++.+++. +..++++.+||||||||++||+|++.+|++||||
T Consensus 80 q~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qr~~la~al~~~p~llllD 156 (220)
T cd03265 80 QDLS--VDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLL-EAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLD 156 (220)
T ss_pred CCcc--ccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH-HHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 9863 3444566665532 11111 134567889999996 5678999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHccc
Q psy208 421 EPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 421 EPTn~LD~~s~~~l~~~L~~~ 441 (443)
|||++||+.+++.+.+.|.++
T Consensus 157 EPt~~LD~~~~~~l~~~l~~~ 177 (220)
T cd03265 157 EPTIGLDPQTRAHVWEYIEKL 177 (220)
T ss_pred CCccCCCHHHHHHHHHHHHHH
Confidence 999999999999999998764
No 51
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=100.00 E-value=1.7e-35 Score=280.67 Aligned_cols=163 Identities=27% Similarity=0.427 Sum_probs=135.9
Q ss_pred eEEEeeeEEEeCCC---CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-------------
Q psy208 276 ILQLSEVNFEYVPG---KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN------------- 339 (443)
Q Consensus 276 ~l~~~~l~~~y~~~---~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------------- 339 (443)
+|+++||+++|+++ +++|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+.
T Consensus 1 ~l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (221)
T TIGR02211 1 LLKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKL 80 (221)
T ss_pred CEEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHH
Confidence 47899999999632 46999999999999999999999999999999999999999999987531
Q ss_pred --eEEEEeccCcccccccchhHHHHHHHh--CCCC----CHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhc
Q psy208 340 --LKFGYFSQHHVDQLDMNLRCVQLLEAA--FPGK----PQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCM 411 (443)
Q Consensus 340 --~~ig~~~Q~~~~~l~~~~~~~~~~~~~--~~~~----~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~ 411 (443)
..++|++|++. +....++.+++... .... ....+.+++..+|+. +..++++..|||||||||+||++++
T Consensus 81 ~~~~i~~v~q~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~laral~ 157 (221)
T TIGR02211 81 RNKKLGFIYQFHH--LLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLE-HRINHRPSELSGGERQRVAIARALV 157 (221)
T ss_pred HHhcEEEEecccc--cCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCh-hhhhCChhhCCHHHHHHHHHHHHHh
Confidence 35999999853 33445666665321 1111 123567889999996 5678999999999999999999999
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 412 AAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 412 ~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
.+|++|||||||++||+.+++.+.+.|.++
T Consensus 158 ~~p~illlDEPt~~LD~~~~~~l~~~l~~~ 187 (221)
T TIGR02211 158 NQPSLVLADEPTGNLDNNNAKIIFDLMLEL 187 (221)
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999765
No 52
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=100.00 E-value=3.8e-35 Score=274.68 Aligned_cols=161 Identities=26% Similarity=0.428 Sum_probs=137.2
Q ss_pred EEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc----------eEEEEec
Q psy208 277 LQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN----------LKFGYFS 346 (443)
Q Consensus 277 l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~----------~~ig~~~ 346 (443)
|+++||++.|+ ++++|+++||+|.+|++++|+|+||||||||+++|+|+++|++|+|.+.+. ..++|++
T Consensus 1 l~i~~l~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~ 79 (201)
T cd03231 1 LEADELTCERD-GRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLG 79 (201)
T ss_pred CEEEEEEEEeC-CceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhheEEec
Confidence 47899999996 467999999999999999999999999999999999999999999987531 2589999
Q ss_pred cCcccccccchhHHHHHHHhCCCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCC
Q psy208 347 QHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHL 426 (443)
Q Consensus 347 Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~L 426 (443)
|++. +....++.+++.........+.+..++..+++. ...++++.+||||||||++||++++.+|++|||||||++|
T Consensus 80 q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~L 156 (201)
T cd03231 80 HAPG--IKTTLSVLENLRFWHADHSDEQVEEALARVGLN-GFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTAL 156 (201)
T ss_pred cccc--cCCCcCHHHHHHhhcccccHHHHHHHHHHcCCh-hhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCC
Confidence 8753 344556777664322222456678889999986 4568899999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHccc
Q psy208 427 DIETIEALGKAINKY 441 (443)
Q Consensus 427 D~~s~~~l~~~L~~~ 441 (443)
|+.+++.+.+.|.++
T Consensus 157 D~~~~~~l~~~l~~~ 171 (201)
T cd03231 157 DKAGVARFAEAMAGH 171 (201)
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999999765
No 53
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=2.7e-35 Score=276.29 Aligned_cols=162 Identities=25% Similarity=0.389 Sum_probs=137.8
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc----------eEEEEe
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN----------LKFGYF 345 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~----------~~ig~~ 345 (443)
+|+++|++++|+ ++++|+|+||+|.+|++++|+|+||||||||+++|+|+++|++|+|.+.+. ..++|+
T Consensus 1 ~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~~~~~~ 79 (204)
T PRK13538 1 MLEARNLACERD-ERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLYL 79 (204)
T ss_pred CeEEEEEEEEEC-CEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhhhheEEe
Confidence 478999999996 467999999999999999999999999999999999999999999987642 248899
Q ss_pred ccCcccccccchhHHHHHHHh--CCC-CCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCC
Q psy208 346 SQHHVDQLDMNLRCVQLLEAA--FPG-KPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEP 422 (443)
Q Consensus 346 ~Q~~~~~l~~~~~~~~~~~~~--~~~-~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEP 422 (443)
+|.+. +....++.+++... ... .....+..+++.+|+. +..++++.+||||||||++||+|++.+|++||||||
T Consensus 80 ~~~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP 156 (204)
T PRK13538 80 GHQPG--IKTELTALENLRFYQRLHGPGDDEALWEALAQVGLA-GFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEP 156 (204)
T ss_pred CCccc--cCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCH-HHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 98752 44455666665421 111 2345678899999996 457889999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHccc
Q psy208 423 TNHLDIETIEALGKAINKY 441 (443)
Q Consensus 423 Tn~LD~~s~~~l~~~L~~~ 441 (443)
|++||+.+++.+.+.|.++
T Consensus 157 t~~LD~~~~~~l~~~l~~~ 175 (204)
T PRK13538 157 FTAIDKQGVARLEALLAQH 175 (204)
T ss_pred CccCCHHHHHHHHHHHHHH
Confidence 9999999999999999875
No 54
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=100.00 E-value=3.7e-35 Score=275.92 Aligned_cols=161 Identities=30% Similarity=0.421 Sum_probs=137.6
Q ss_pred EEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc---------eEEEEecc
Q psy208 277 LQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN---------LKFGYFSQ 347 (443)
Q Consensus 277 l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~---------~~ig~~~Q 347 (443)
|+++|++++|+ ++++|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+. ..++|++|
T Consensus 1 l~~~~l~~~~~-~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q 79 (208)
T cd03268 1 LKTNDLTKTYG-KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGALIE 79 (208)
T ss_pred CEEEEEEEEEC-CeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhEEEecC
Confidence 47899999995 568999999999999999999999999999999999999999999988642 25899999
Q ss_pred CcccccccchhHHHHHHHh--CCCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCC
Q psy208 348 HHVDQLDMNLRCVQLLEAA--FPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNH 425 (443)
Q Consensus 348 ~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~ 425 (443)
++. +....++.+++... ........+..+++.+++. +..++++.+|||||||||+||++++.+|++|||||||++
T Consensus 80 ~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~ 156 (208)
T cd03268 80 APG--FYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLK-DSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNG 156 (208)
T ss_pred CCc--cCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCH-HHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccc
Confidence 853 44456777665321 1222455678889999986 467889999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHccc
Q psy208 426 LDIETIEALGKAINKY 441 (443)
Q Consensus 426 LD~~s~~~l~~~L~~~ 441 (443)
||+.+++.+.+.|.++
T Consensus 157 LD~~~~~~l~~~l~~~ 172 (208)
T cd03268 157 LDPDGIKELRELILSL 172 (208)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999998765
No 55
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.7e-35 Score=292.99 Aligned_cols=163 Identities=26% Similarity=0.372 Sum_probs=142.6
Q ss_pred CeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc---------eEEEEe
Q psy208 275 PILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN---------LKFGYF 345 (443)
Q Consensus 275 ~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~---------~~ig~~ 345 (443)
..|+++||++.|++.. +++++||+|..||+++|+||||||||||||+|+|+++|++|+|.++++ ..++++
T Consensus 2 ~~i~l~~v~K~yg~~~-~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iamV 80 (338)
T COG3839 2 AELELKNVRKSFGSFE-VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAMV 80 (338)
T ss_pred cEEEEeeeEEEcCCce-eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEEE
Confidence 3689999999996433 999999999999999999999999999999999999999999998752 369999
Q ss_pred ccCcccccccchhHHHHHHHhCC--C----CCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEE
Q psy208 346 SQHHVDQLDMNLRCVQLLEAAFP--G----KPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVL 419 (443)
Q Consensus 346 ~Q~~~~~l~~~~~~~~~~~~~~~--~----~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiL 419 (443)
||+. .+.+..|+.+++..... + ..++++.+..+.+++. +.++++|.+|||||||||+||||++.+|++++|
T Consensus 81 FQ~y--ALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~-~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~ 157 (338)
T COG3839 81 FQNY--ALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLE-HLLNRKPLQLSGGQRQRVALARALVRKPKVFLL 157 (338)
T ss_pred eCCc--cccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCCh-hHHhcCcccCChhhHHHHHHHHHHhcCCCEEEe
Confidence 9985 47888899998864221 1 2345678888999996 688999999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHccc
Q psy208 420 DEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 420 DEPTn~LD~~s~~~l~~~L~~~ 441 (443)
|||+++||...+..+...|++.
T Consensus 158 DEPlSnLDa~lR~~mr~ei~~l 179 (338)
T COG3839 158 DEPLSNLDAKLRVLMRSEIKKL 179 (338)
T ss_pred cCchhHhhHHHHHHHHHHHHHH
Confidence 9999999999999998888763
No 56
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=4.9e-35 Score=291.00 Aligned_cols=164 Identities=27% Similarity=0.387 Sum_probs=139.6
Q ss_pred CCeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc----------eEEE
Q psy208 274 PPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN----------LKFG 343 (443)
Q Consensus 274 ~~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~----------~~ig 343 (443)
.++|+++||+++|+ ++.+|+|+||+|.+|+++||+||||||||||+|+|+|+++|++|+|.+.+. ..+|
T Consensus 5 ~~~i~i~~l~k~~~-~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~ig 83 (306)
T PRK13537 5 VAPIDFRNVEKRYG-DKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVG 83 (306)
T ss_pred CceEEEEeEEEEEC-CeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcEE
Confidence 35799999999996 568999999999999999999999999999999999999999999988531 3599
Q ss_pred EeccCcccccccchhHHHHHHH--hCCCCC----HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeE
Q psy208 344 YFSQHHVDQLDMNLRCVQLLEA--AFPGKP----QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFL 417 (443)
Q Consensus 344 ~~~Q~~~~~l~~~~~~~~~~~~--~~~~~~----~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lL 417 (443)
|++|++. +....++.+++.. ...... ...+..+++.+++. ...+++++.||||||||++||+||+.+|++|
T Consensus 84 ~v~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrl~la~aL~~~P~ll 160 (306)
T PRK13537 84 VVPQFDN--LDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLE-NKADAKVGELSGGMKRRLTLARALVNDPDVL 160 (306)
T ss_pred EEeccCc--CCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-hHhcCchhhCCHHHHHHHHHHHHHhCCCCEE
Confidence 9999863 4455677666542 122222 23456788899986 5678999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHccc
Q psy208 418 VLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 418 iLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
||||||+|||+.++..+.+.|+++
T Consensus 161 lLDEPt~gLD~~~~~~l~~~l~~l 184 (306)
T PRK13537 161 VLDEPTTGLDPQARHLMWERLRSL 184 (306)
T ss_pred EEeCCCcCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999875
No 57
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=100.00 E-value=2.5e-35 Score=277.91 Aligned_cols=161 Identities=23% Similarity=0.354 Sum_probs=135.3
Q ss_pred EEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc---------eEEEEecc
Q psy208 277 LQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN---------LKFGYFSQ 347 (443)
Q Consensus 277 l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~---------~~ig~~~Q 347 (443)
|+++|++++|+ ++++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+. ..++|++|
T Consensus 1 i~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~~q 79 (213)
T cd03301 1 VELENVTKRFG-NVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMVFQ 79 (213)
T ss_pred CEEEeeEEEEC-CeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEEec
Confidence 47899999996 468999999999999999999999999999999999999999999987542 25899999
Q ss_pred CcccccccchhHHHHHHHh--CCCCC----HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeC
Q psy208 348 HHVDQLDMNLRCVQLLEAA--FPGKP----QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDE 421 (443)
Q Consensus 348 ~~~~~l~~~~~~~~~~~~~--~~~~~----~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDE 421 (443)
++. +....++.+++... ..... .+.+..++..+|+. +..++++.+||||||||++||++++.+|++|||||
T Consensus 80 ~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qr~~laral~~~p~llllDE 156 (213)
T cd03301 80 NYA--LYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIE-HLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDE 156 (213)
T ss_pred Chh--hccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCH-HHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 863 34455666665421 11111 23466788999986 56789999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHccc
Q psy208 422 PTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 422 PTn~LD~~s~~~l~~~L~~~ 441 (443)
||++||+.+++.+.+.|.++
T Consensus 157 Pt~~LD~~~~~~l~~~l~~~ 176 (213)
T cd03301 157 PLSNLDAKLRVQMRAELKRL 176 (213)
T ss_pred CcccCCHHHHHHHHHHHHHH
Confidence 99999999999999999765
No 58
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=100.00 E-value=4.6e-35 Score=278.69 Aligned_cols=166 Identities=25% Similarity=0.431 Sum_probs=135.0
Q ss_pred eEEEeeeEEEeCCC---CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-------------
Q psy208 276 ILQLSEVNFEYVPG---KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN------------- 339 (443)
Q Consensus 276 ~l~~~~l~~~y~~~---~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------------- 339 (443)
+|+++||+++|++. .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+.+.
T Consensus 1 ~l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (228)
T cd03257 1 LLEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIR 80 (228)
T ss_pred CeEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHh
Confidence 47899999999643 27999999999999999999999999999999999999999999987531
Q ss_pred -eEEEEeccCcccccccchhHHHHHHH---hCC-CCCH---HH-HHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHh
Q psy208 340 -LKFGYFSQHHVDQLDMNLRCVQLLEA---AFP-GKPQ---EE-YRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMC 410 (443)
Q Consensus 340 -~~ig~~~Q~~~~~l~~~~~~~~~~~~---~~~-~~~~---~~-~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al 410 (443)
..++|++|++...+....++.+++.. ... .... .. +..++..+++.....++++.+||||||||++|||++
T Consensus 81 ~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral 160 (228)
T cd03257 81 RKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARAL 160 (228)
T ss_pred hccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHH
Confidence 25899999863223444566665532 111 1111 11 236788899854567899999999999999999999
Q ss_pred ccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 411 MAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 411 ~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
+.+|++|||||||++||+.+++.+.+.|.++
T Consensus 161 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~ 191 (228)
T cd03257 161 ALNPKLLIADEPTSALDVSVQAQILDLLKKL 191 (228)
T ss_pred hcCCCEEEecCCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999765
No 59
>PRK10908 cell division protein FtsE; Provisional
Probab=100.00 E-value=2.8e-35 Score=279.51 Aligned_cols=163 Identities=29% Similarity=0.451 Sum_probs=136.1
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc--------------eE
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN--------------LK 341 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~--------------~~ 341 (443)
+|+++|+++.|++++++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+. ..
T Consensus 1 ~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 80 (222)
T PRK10908 1 MIRFEHVSKAYLGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQ 80 (222)
T ss_pred CEEEEeeEEEecCCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhh
Confidence 4789999999943467999999999999999999999999999999999999999999987531 25
Q ss_pred EEEeccCcccccccchhHHHHHHHh--CCCCC----HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCC
Q psy208 342 FGYFSQHHVDQLDMNLRCVQLLEAA--FPGKP----QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPN 415 (443)
Q Consensus 342 ig~~~Q~~~~~l~~~~~~~~~~~~~--~~~~~----~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~ 415 (443)
++|++|++. +.+..++.+++... ..... ...+..+++.+++. +..++++.+||||||||++||+|++.+|+
T Consensus 81 i~~~~q~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~laral~~~p~ 157 (222)
T PRK10908 81 IGMIFQDHH--LLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLL-DKAKNFPIQLSGGEQQRVGIARAVVNKPA 157 (222)
T ss_pred eEEEecCcc--ccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCh-hhhhCCchhCCHHHHHHHHHHHHHHcCCC
Confidence 899999863 33445666665421 11112 22456788999986 46788999999999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 416 FLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 416 lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
+|||||||++||+.+++.+.+.|.++
T Consensus 158 llllDEPt~~LD~~~~~~l~~~l~~~ 183 (222)
T PRK10908 158 VLLADEPTGNLDDALSEGILRLFEEF 183 (222)
T ss_pred EEEEeCCCCcCCHHHHHHHHHHHHHH
Confidence 99999999999999999999998865
No 60
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.4e-35 Score=277.60 Aligned_cols=161 Identities=26% Similarity=0.434 Sum_probs=135.8
Q ss_pred EEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-------eEEEEeccCc
Q psy208 277 LQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-------LKFGYFSQHH 349 (443)
Q Consensus 277 l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-------~~ig~~~Q~~ 349 (443)
|+++|+++.|+ ++++|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++. ..++|++|++
T Consensus 1 l~~~~l~~~~~-~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~ 79 (210)
T cd03269 1 LEVENVTKRFG-RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPEER 79 (210)
T ss_pred CEEEEEEEEEC-CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHccEEEeccCC
Confidence 47899999996 567999999999999999999999999999999999999999999988642 3589999986
Q ss_pred ccccccchhHHHHHHHh--CCCC----CHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCC
Q psy208 350 VDQLDMNLRCVQLLEAA--FPGK----PQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPT 423 (443)
Q Consensus 350 ~~~l~~~~~~~~~~~~~--~~~~----~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPT 423 (443)
. +....++.+++... .... ..+.+.+++..+++. ...++++.+||||||||++||++++.+|++|||||||
T Consensus 80 ~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrl~la~al~~~p~~lllDEP~ 156 (210)
T cd03269 80 G--LYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELS-EYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPF 156 (210)
T ss_pred c--CCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCh-HHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 3 34445666655321 1111 134567889999986 5678899999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHccc
Q psy208 424 NHLDIETIEALGKAINKY 441 (443)
Q Consensus 424 n~LD~~s~~~l~~~L~~~ 441 (443)
++||+.+++.+.+.|.++
T Consensus 157 ~~LD~~~~~~~~~~l~~~ 174 (210)
T cd03269 157 SGLDPVNVELLKDVIREL 174 (210)
T ss_pred cCCCHHHHHHHHHHHHHH
Confidence 999999999999999865
No 61
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=100.00 E-value=2.7e-35 Score=277.81 Aligned_cols=162 Identities=30% Similarity=0.395 Sum_probs=135.2
Q ss_pred EEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc--------------eEE
Q psy208 277 LQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN--------------LKF 342 (443)
Q Consensus 277 l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~--------------~~i 342 (443)
|+++|+++.|++++++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+. ..+
T Consensus 1 l~~~~l~~~~~~~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i 80 (214)
T cd03292 1 IEFINVTKTYPNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKI 80 (214)
T ss_pred CEEEEEEEEeCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHhe
Confidence 478999999964467999999999999999999999999999999999999999999987531 248
Q ss_pred EEeccCcccccccchhHHHHHHHh--CCCC----CHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCe
Q psy208 343 GYFSQHHVDQLDMNLRCVQLLEAA--FPGK----PQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNF 416 (443)
Q Consensus 343 g~~~Q~~~~~l~~~~~~~~~~~~~--~~~~----~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~l 416 (443)
+|++|++. +....++.+++... .... ..+.+..++..+|+. ...++++.+||||||||++||++++.+|++
T Consensus 81 ~~v~q~~~--~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~laral~~~p~l 157 (214)
T cd03292 81 GVVFQDFR--LLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLS-HKHRALPAELSGGEQQRVAIARAIVNSPTI 157 (214)
T ss_pred EEEecCch--hccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH-HHhhCChhhcCHHHHHHHHHHHHHHcCCCE
Confidence 99999863 34445666665421 1111 123567889999986 467889999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 417 LVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 417 LiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
|||||||++||+.+++.+.+.|.++
T Consensus 158 lllDEPt~~LD~~~~~~~~~~l~~~ 182 (214)
T cd03292 158 LIADEPTGNLDPDTTWEIMNLLKKI 182 (214)
T ss_pred EEEeCCCCcCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999875
No 62
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=100.00 E-value=3.5e-35 Score=279.90 Aligned_cols=164 Identities=27% Similarity=0.418 Sum_probs=137.3
Q ss_pred CeEEEeeeEEEeCCC---CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc------------
Q psy208 275 PILQLSEVNFEYVPG---KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN------------ 339 (443)
Q Consensus 275 ~~l~~~~l~~~y~~~---~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------------ 339 (443)
++|+++|++++|++. .++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+.
T Consensus 5 ~~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 84 (228)
T PRK10584 5 NIVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAK 84 (228)
T ss_pred ceEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHH
Confidence 579999999999642 25999999999999999999999999999999999999999999987531
Q ss_pred ---eEEEEeccCcccccccchhHHHHHHHh--CCCC----CHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHh
Q psy208 340 ---LKFGYFSQHHVDQLDMNLRCVQLLEAA--FPGK----PQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMC 410 (443)
Q Consensus 340 ---~~ig~~~Q~~~~~l~~~~~~~~~~~~~--~~~~----~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al 410 (443)
..++|++|++. +....++.+++... +... ..+.+.+++..+++. +..++++..||||||||++||++|
T Consensus 85 ~~~~~i~~~~q~~~--l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~Ge~qrl~la~al 161 (228)
T PRK10584 85 LRAKHVGFVFQSFM--LIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLG-KRLDHLPAQLSGGEQQRVALARAF 161 (228)
T ss_pred HHhheEEEEEcccc--cCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCH-hHhhCChhhCCHHHHHHHHHHHHH
Confidence 35999999863 34445666665321 1111 134577889999996 567889999999999999999999
Q ss_pred ccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 411 MAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 411 ~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
+.+|++|||||||++||+.+++.+.+.|.++
T Consensus 162 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~ 192 (228)
T PRK10584 162 NGRPDVLFADEPTGNLDRQTGDKIADLLFSL 192 (228)
T ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999765
No 63
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=100.00 E-value=3e-35 Score=278.34 Aligned_cols=162 Identities=28% Similarity=0.414 Sum_probs=136.8
Q ss_pred eEEEeeeEEEeCCCC----ceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc----------eE
Q psy208 276 ILQLSEVNFEYVPGK----PILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN----------LK 341 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~----~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~----------~~ 341 (443)
+|+++|++++|++ + ++|+++||+|.+|++++|+|+||||||||+++|+|+++|++|+|.+.+. ..
T Consensus 1 ~l~~~~v~~~~~~-~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 79 (218)
T cd03266 1 MITADALTKRFRD-VKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRR 79 (218)
T ss_pred CeEEEEEEEecCC-CCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhh
Confidence 4789999999964 4 7999999999999999999999999999999999999999999988541 25
Q ss_pred EEEeccCcccccccchhHHHHHHH--hCCCC----CHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCC
Q psy208 342 FGYFSQHHVDQLDMNLRCVQLLEA--AFPGK----PQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPN 415 (443)
Q Consensus 342 ig~~~Q~~~~~l~~~~~~~~~~~~--~~~~~----~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~ 415 (443)
++|++|++ .+....++.+++.. ..... ....+.++++.+|+. +..++++.+||||||||++||+|++.+|+
T Consensus 80 i~~~~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~laral~~~p~ 156 (218)
T cd03266 80 LGFVSDST--GLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGME-ELLDRRVGGFSTGMRQKVAIARALVHDPP 156 (218)
T ss_pred EEEecCCc--ccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH-HHHhhhhhhcCHHHHHHHHHHHHHhcCCC
Confidence 89999986 34444566666532 11111 134567789999985 56789999999999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 416 FLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 416 lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
+|||||||++||+.+++.+.+.|.++
T Consensus 157 illlDEPt~~LD~~~~~~l~~~l~~~ 182 (218)
T cd03266 157 VLLLDEPTTGLDVMATRALREFIRQL 182 (218)
T ss_pred EEEEcCCCcCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999876
No 64
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.2e-35 Score=280.87 Aligned_cols=162 Identities=27% Similarity=0.415 Sum_probs=136.3
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc---------eEEEEec
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN---------LKFGYFS 346 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~---------~~ig~~~ 346 (443)
+|+++||+++|+ ++++|+|+||+|.+|++++|+||||||||||+|+|+|+++|++|+|.+.+. ..++|++
T Consensus 2 ~l~~~~l~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v~ 80 (239)
T cd03296 2 SIEVRNVSKRFG-DFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFVF 80 (239)
T ss_pred EEEEEeEEEEEC-CEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEEEe
Confidence 489999999996 467999999999999999999999999999999999999999999987541 2589999
Q ss_pred cCcccccccchhHHHHHHHhC--CCC----C----HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCe
Q psy208 347 QHHVDQLDMNLRCVQLLEAAF--PGK----P----QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNF 416 (443)
Q Consensus 347 Q~~~~~l~~~~~~~~~~~~~~--~~~----~----~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~l 416 (443)
|++. +....++.+++.... ... . .+.+..++..+++. ...++++.+|||||||||+||+||+.+|++
T Consensus 81 q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrl~la~al~~~p~l 157 (239)
T cd03296 81 QHYA--LFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLD-WLADRYPAQLSGGQRQRVALARALAVEPKV 157 (239)
T ss_pred cCCc--ccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCCh-hhhhcChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 9863 344456666654211 110 1 23456789999985 567889999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 417 LVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 417 LiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
|||||||++||+.+++.+.+.|.++
T Consensus 158 lllDEP~~~LD~~~~~~l~~~l~~~ 182 (239)
T cd03296 158 LLLDEPFGALDAKVRKELRRWLRRL 182 (239)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999865
No 65
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.6e-35 Score=284.82 Aligned_cols=162 Identities=30% Similarity=0.417 Sum_probs=136.6
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc------eEEEEeccCc
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN------LKFGYFSQHH 349 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------~~ig~~~Q~~ 349 (443)
+|+++|+++.|+ ++++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+. ..++|++|++
T Consensus 1 ml~~~~l~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~ 79 (255)
T PRK11248 1 MLQISHLYADYG-GKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGVVFQNE 79 (255)
T ss_pred CEEEEEEEEEeC-CeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCCcEEEEeCCC
Confidence 478999999996 467999999999999999999999999999999999999999999988542 2489999985
Q ss_pred ccccccchhHHHHHHHh--CCCCC----HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCC
Q psy208 350 VDQLDMNLRCVQLLEAA--FPGKP----QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPT 423 (443)
Q Consensus 350 ~~~l~~~~~~~~~~~~~--~~~~~----~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPT 423 (443)
. +....++.+++... ..... ...+.+++..+|+. ...++++.+|||||||||+||++|+.+|++|||||||
T Consensus 80 ~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt 156 (255)
T PRK11248 80 G--LLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLE-GAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPF 156 (255)
T ss_pred c--cCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCh-hHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 3 33445666665421 11111 23577889999996 4678899999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHccc
Q psy208 424 NHLDIETIEALGKAINKY 441 (443)
Q Consensus 424 n~LD~~s~~~l~~~L~~~ 441 (443)
++||+.+++.+.+.|.++
T Consensus 157 ~~LD~~~~~~l~~~L~~~ 174 (255)
T PRK11248 157 GALDAFTREQMQTLLLKL 174 (255)
T ss_pred ccCCHHHHHHHHHHHHHH
Confidence 999999999999999765
No 66
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=100.00 E-value=2.7e-35 Score=283.22 Aligned_cols=163 Identities=29% Similarity=0.429 Sum_probs=136.2
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc--------------eE
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN--------------LK 341 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~--------------~~ 341 (443)
+|+++||+++|++++++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+. ..
T Consensus 1 ~l~~~~l~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (243)
T TIGR02315 1 MLEVENLSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRR 80 (243)
T ss_pred CeEEEeeeeecCCCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhh
Confidence 4789999999962467999999999999999999999999999999999999999999987531 24
Q ss_pred EEEeccCcccccccchhHHHHHHHhC--------------CCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHH
Q psy208 342 FGYFSQHHVDQLDMNLRCVQLLEAAF--------------PGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFA 407 (443)
Q Consensus 342 ig~~~Q~~~~~l~~~~~~~~~~~~~~--------------~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA 407 (443)
++|++|++. +....++.+++.... .......+.++++.+++. ...++++.+|||||||||+||
T Consensus 81 i~~v~q~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~la 157 (243)
T TIGR02315 81 IGMIFQHYN--LIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLA-DKAYQRADQLSGGQQQRVAIA 157 (243)
T ss_pred eEEEcCCCc--ccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcH-hhhcCCcccCCHHHHHHHHHH
Confidence 899999853 344456666654211 011133567789999985 567889999999999999999
Q ss_pred HHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 408 RMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 408 ~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
++|+.+|++|||||||++||+.+++.+.+.|.++
T Consensus 158 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~ 191 (243)
T TIGR02315 158 RALAQQPDLILADEPIASLDPKTSKQVMDYLKRI 191 (243)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998765
No 67
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=1.2e-35 Score=295.60 Aligned_cols=164 Identities=26% Similarity=0.384 Sum_probs=144.6
Q ss_pred CCeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcC---------ceEEEE
Q psy208 274 PPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR---------NLKFGY 344 (443)
Q Consensus 274 ~~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~---------~~~ig~ 344 (443)
.+.|+++||+++|+ +..+++|+||+|.+||+++|+||||||||||||+|+|+..|++|+|.+++ +..+|+
T Consensus 3 ~~~l~i~~v~k~yg-~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig~ 81 (352)
T COG3842 3 KPALEIRNVSKSFG-DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIGM 81 (352)
T ss_pred CceEEEEeeeeecC-CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhcccce
Confidence 35799999999996 67899999999999999999999999999999999999999999999864 246999
Q ss_pred eccCcccccccchhHHHHHHHhCC--C-CC----HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeE
Q psy208 345 FSQHHVDQLDMNLRCVQLLEAAFP--G-KP----QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFL 417 (443)
Q Consensus 345 ~~Q~~~~~l~~~~~~~~~~~~~~~--~-~~----~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lL 417 (443)
+||+. .+++.+++.+++..... . .. .+.+.++|+.+++. +..+++|++|||||+|||+|||||+.+|++|
T Consensus 82 VFQ~Y--ALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~-~~~~R~p~qLSGGQqQRVALARAL~~~P~vL 158 (352)
T COG3842 82 VFQSY--ALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLE-GFADRKPHQLSGGQQQRVALARALVPEPKVL 158 (352)
T ss_pred eecCc--ccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCch-hhhhhChhhhChHHHHHHHHHHHhhcCcchh
Confidence 99985 47888999998764322 1 12 24678899999997 5889999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHccc
Q psy208 418 VLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 418 iLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
|||||.++||..-++.+...|++.
T Consensus 159 LLDEPlSaLD~kLR~~mr~Elk~l 182 (352)
T COG3842 159 LLDEPLSALDAKLREQMRKELKEL 182 (352)
T ss_pred hhcCcccchhHHHHHHHHHHHHHH
Confidence 999999999999999999887753
No 68
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=100.00 E-value=3.9e-35 Score=277.96 Aligned_cols=163 Identities=33% Similarity=0.471 Sum_probs=135.7
Q ss_pred EEEeeeEEEeCCC-CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc----------eEEEEe
Q psy208 277 LQLSEVNFEYVPG-KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN----------LKFGYF 345 (443)
Q Consensus 277 l~~~~l~~~y~~~-~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~----------~~ig~~ 345 (443)
|+++||++.|+++ +++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+. ..++|+
T Consensus 1 l~~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~v 80 (220)
T cd03263 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYC 80 (220)
T ss_pred CEEEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEEe
Confidence 5789999999642 67999999999999999999999999999999999999999999987542 248999
Q ss_pred ccCcccccccchhHHHHHHHh--CCCCC----HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEE
Q psy208 346 SQHHVDQLDMNLRCVQLLEAA--FPGKP----QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVL 419 (443)
Q Consensus 346 ~Q~~~~~l~~~~~~~~~~~~~--~~~~~----~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiL 419 (443)
+|++. +....++.+++... ..... .+.+.+++..+++. +..++++.+||||||||++||++++.+|++|||
T Consensus 81 ~q~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~la~al~~~p~llll 157 (220)
T cd03263 81 PQFDA--LFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLT-DKANKRARTLSGGMKRKLSLAIALIGGPSVLLL 157 (220)
T ss_pred cCcCC--ccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH-HHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99853 34445666655321 11111 24567889999985 567889999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHcccc
Q psy208 420 DEPTNHLDIETIEALGKAINKYT 442 (443)
Q Consensus 420 DEPTn~LD~~s~~~l~~~L~~~~ 442 (443)
||||++||+.+++.+.+.|.++.
T Consensus 158 DEP~~~LD~~~~~~l~~~l~~~~ 180 (220)
T cd03263 158 DEPTSGLDPASRRAIWDLILEVR 180 (220)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999999998753
No 69
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.7e-35 Score=297.15 Aligned_cols=163 Identities=24% Similarity=0.335 Sum_probs=140.7
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc---------eEEEEec
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN---------LKFGYFS 346 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~---------~~ig~~~ 346 (443)
+|+++|++++|++++.+|+|+||+|.+|++++|+||||||||||||+|+|+++|++|+|.+++. ..+||++
T Consensus 3 ~l~i~~l~~~~~~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~ 82 (356)
T PRK11650 3 GLKLQAVRKSYDGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAMVF 82 (356)
T ss_pred EEEEEeEEEEeCCCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEe
Confidence 6899999999943568999999999999999999999999999999999999999999988642 3599999
Q ss_pred cCcccccccchhHHHHHHHhCC--CCC----HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEe
Q psy208 347 QHHVDQLDMNLRCVQLLEAAFP--GKP----QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLD 420 (443)
Q Consensus 347 Q~~~~~l~~~~~~~~~~~~~~~--~~~----~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLD 420 (443)
|++ .+.+..++.+++..... ... ...+.+++..+|+. +..++++.+|||||||||+|||||+.+|++||||
T Consensus 83 Q~~--~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~-~~~~~~~~~LSgGq~QRvalARAL~~~P~llLLD 159 (356)
T PRK11650 83 QNY--ALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELE-PLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFD 159 (356)
T ss_pred CCc--cccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCCh-hHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 986 35667788887753221 112 24567889999996 6789999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHccc
Q psy208 421 EPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 421 EPTn~LD~~s~~~l~~~L~~~ 441 (443)
|||++||+.+++.+.+.|+++
T Consensus 160 EP~s~LD~~~r~~l~~~l~~l 180 (356)
T PRK11650 160 EPLSNLDAKLRVQMRLEIQRL 180 (356)
T ss_pred CCcccCCHHHHHHHHHHHHHH
Confidence 999999999999999988764
No 70
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=7.4e-35 Score=289.51 Aligned_cols=163 Identities=27% Similarity=0.382 Sum_probs=137.7
Q ss_pred CeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcC----------ceEEEE
Q psy208 275 PILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR----------NLKFGY 344 (443)
Q Consensus 275 ~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~----------~~~ig~ 344 (443)
.+|+++||+++|+ ++++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.+.+ ...+||
T Consensus 3 ~~i~~~~l~~~~~-~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~ 81 (303)
T TIGR01288 3 VAIDLVGVSKSYG-DKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAIGV 81 (303)
T ss_pred cEEEEEeEEEEeC-CeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcEEE
Confidence 4799999999996 56799999999999999999999999999999999999999999998753 235999
Q ss_pred eccCcccccccchhHHHHHHH--hCCCCC----HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEE
Q psy208 345 FSQHHVDQLDMNLRCVQLLEA--AFPGKP----QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLV 418 (443)
Q Consensus 345 ~~Q~~~~~l~~~~~~~~~~~~--~~~~~~----~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLi 418 (443)
++|++. +....++.+++.. ...... ...+..+++.+++. +..++++.+|||||||||+||+||+.+|++||
T Consensus 82 v~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~-~~~~~~~~~LSgG~~qrv~la~al~~~p~lll 158 (303)
T TIGR01288 82 VPQFDN--LDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLE-SKADVRVALLSGGMKRRLTLARALINDPQLLI 158 (303)
T ss_pred Eecccc--CCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCh-hHhcCchhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 999863 4445566666532 111122 13456788899986 56788999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHccc
Q psy208 419 LDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 419 LDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
|||||+|||+.+++.+.+.|.++
T Consensus 159 LDEPt~gLD~~~~~~l~~~l~~~ 181 (303)
T TIGR01288 159 LDEPTTGLDPHARHLIWERLRSL 181 (303)
T ss_pred EeCCCcCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999875
No 71
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=8.6e-35 Score=292.78 Aligned_cols=165 Identities=28% Similarity=0.402 Sum_probs=139.6
Q ss_pred CCCeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc----------eEE
Q psy208 273 SPPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN----------LKF 342 (443)
Q Consensus 273 ~~~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~----------~~i 342 (443)
+.++|+++||+++|+ ++.+|+|+||+|.+|+++||+||||||||||+++|+|+++|++|+|.+.+. ..+
T Consensus 38 ~~~~i~i~nl~k~y~-~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~i 116 (340)
T PRK13536 38 STVAIDLAGVSKSYG-DKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARI 116 (340)
T ss_pred CceeEEEEEEEEEEC-CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhccE
Confidence 346899999999996 567999999999999999999999999999999999999999999987542 359
Q ss_pred EEeccCcccccccchhHHHHHHH--hCCCCC----HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCe
Q psy208 343 GYFSQHHVDQLDMNLRCVQLLEA--AFPGKP----QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNF 416 (443)
Q Consensus 343 g~~~Q~~~~~l~~~~~~~~~~~~--~~~~~~----~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~l 416 (443)
||++|++. +....++.+++.. ...... ...+..+++.+++. +..++++.+||||||||++||+||+.+|++
T Consensus 117 g~v~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~-~~~~~~~~~LS~G~kqrv~lA~aL~~~P~l 193 (340)
T PRK13536 117 GVVPQFDN--LDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLE-SKADARVSDLSGGMKRRLTLARALINDPQL 193 (340)
T ss_pred EEEeCCcc--CCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-hhhCCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 99999853 4445566666542 121222 23456788899986 567899999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 417 LVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 417 LiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
|||||||+|||+.++..+.+.|.++
T Consensus 194 LiLDEPt~gLD~~~r~~l~~~l~~l 218 (340)
T PRK13536 194 LILDEPTTGLDPHARHLIWERLRSL 218 (340)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999875
No 72
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=2.2e-35 Score=277.91 Aligned_cols=162 Identities=33% Similarity=0.484 Sum_probs=133.4
Q ss_pred EEeeeEEEeCCC-CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-----------eEEEEe
Q psy208 278 QLSEVNFEYVPG-KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-----------LKFGYF 345 (443)
Q Consensus 278 ~~~~l~~~y~~~-~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~ig~~ 345 (443)
+++|++++|++. +++|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+. ..++|+
T Consensus 1 ~~~~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (211)
T cd03225 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLV 80 (211)
T ss_pred CceeEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEE
Confidence 368999999632 57999999999999999999999999999999999999999999987541 258999
Q ss_pred ccCcccccccchhHHHHHHHh--CCCCC----HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEE
Q psy208 346 SQHHVDQLDMNLRCVQLLEAA--FPGKP----QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVL 419 (443)
Q Consensus 346 ~Q~~~~~l~~~~~~~~~~~~~--~~~~~----~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiL 419 (443)
+|++...+ ...++.+++... ..... ...+..++..+++. +..++++..|||||||||+|||||+.+|++|||
T Consensus 81 ~q~~~~~~-~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~laral~~~p~llll 158 (211)
T cd03225 81 FQNPDDQF-FGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLE-GLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLL 158 (211)
T ss_pred ecChhhhc-CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcH-hhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99852112 234666655321 11111 23567789999986 567899999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHccc
Q psy208 420 DEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 420 DEPTn~LD~~s~~~l~~~L~~~ 441 (443)
||||++||+.+++.+.+.|.++
T Consensus 159 DEPt~~LD~~~~~~~~~~l~~~ 180 (211)
T cd03225 159 DEPTAGLDPAGRRELLELLKKL 180 (211)
T ss_pred cCCcccCCHHHHHHHHHHHHHH
Confidence 9999999999999999999775
No 73
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=100.00 E-value=7.3e-35 Score=282.99 Aligned_cols=166 Identities=23% Similarity=0.341 Sum_probs=136.5
Q ss_pred CeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCce--------------
Q psy208 275 PILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNL-------------- 340 (443)
Q Consensus 275 ~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~-------------- 340 (443)
++|+++|++++|+ ++++|+|+||+|.+|++++|+|+||||||||+++|+|+++|++|+|.+.+..
T Consensus 5 ~~l~~~~l~~~~~-~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~ 83 (258)
T PRK11701 5 PLLSVRGLTKLYG-PRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAER 83 (258)
T ss_pred ceEEEeeeEEEcC-CceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHH
Confidence 5799999999996 4689999999999999999999999999999999999999999999875421
Q ss_pred ------EEEEeccCcccccccchhHHHHHHH---hCCC----CCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHH
Q psy208 341 ------KFGYFSQHHVDQLDMNLRCVQLLEA---AFPG----KPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFA 407 (443)
Q Consensus 341 ------~ig~~~Q~~~~~l~~~~~~~~~~~~---~~~~----~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA 407 (443)
.++|++|++...+....+..+++.. .+.. .....+.+++..+++.....++++.+|||||+||++||
T Consensus 84 ~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~la 163 (258)
T PRK11701 84 RRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIA 163 (258)
T ss_pred HHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHHHH
Confidence 4899999864334444444433321 1111 11345667889999864467899999999999999999
Q ss_pred HHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 408 RMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 408 ~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
|+|+.+|++|||||||++||+.+++.+.+.|.++
T Consensus 164 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~ 197 (258)
T PRK11701 164 RNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGL 197 (258)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998764
No 74
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=4.5e-35 Score=294.68 Aligned_cols=163 Identities=27% Similarity=0.382 Sum_probs=138.2
Q ss_pred eEEEeeeEEEeCC---CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-------------
Q psy208 276 ILQLSEVNFEYVP---GKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN------------- 339 (443)
Q Consensus 276 ~l~~~~l~~~y~~---~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------------- 339 (443)
||+++||+++|++ ..++|+|+||+|++|++++|+||||||||||+|+|+|+++|++|+|.+.+.
T Consensus 1 mI~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~ 80 (343)
T TIGR02314 1 MIKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKA 80 (343)
T ss_pred CEEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHH
Confidence 5899999999953 247999999999999999999999999999999999999999999987531
Q ss_pred -eEEEEeccCcccccccchhHHHHHHHh--CCCCC----HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhcc
Q psy208 340 -LKFGYFSQHHVDQLDMNLRCVQLLEAA--FPGKP----QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMA 412 (443)
Q Consensus 340 -~~ig~~~Q~~~~~l~~~~~~~~~~~~~--~~~~~----~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~ 412 (443)
..+||++|++. +....++.+++... ..... .+.+.+++..+|+. +..++++.+|||||||||+|||||+.
T Consensus 81 r~~Ig~v~Q~~~--l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~-~~~~~~~~~LSgGqkQRV~IARAL~~ 157 (343)
T TIGR02314 81 RRQIGMIFQHFN--LLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLG-DKHDSYPSNLSGGQKQRVAIARALAS 157 (343)
T ss_pred hcCEEEEECCcc--ccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-hhhhCChhhCCHHHHHHHHHHHHHHh
Confidence 25999999863 44456777766431 11222 23567889999996 57889999999999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 413 APNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 413 ~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
+|++|||||||++||+.++..+.+.|++.
T Consensus 158 ~P~iLLlDEPts~LD~~t~~~i~~lL~~l 186 (343)
T TIGR02314 158 NPKVLLCDEATSALDPATTQSILELLKEI 186 (343)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999998865
No 75
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=100.00 E-value=7.3e-35 Score=284.83 Aligned_cols=164 Identities=26% Similarity=0.362 Sum_probs=137.5
Q ss_pred CCeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc--------------
Q psy208 274 PPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-------------- 339 (443)
Q Consensus 274 ~~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-------------- 339 (443)
.++|+++||+++|+ ++++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+.
T Consensus 5 ~~~l~~~~l~~~~~-~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 83 (269)
T PRK11831 5 ANLVDMRGVSFTRG-NRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVR 83 (269)
T ss_pred cceEEEeCeEEEEC-CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHh
Confidence 35899999999995 567999999999999999999999999999999999999999999987531
Q ss_pred eEEEEeccCcccccccchhHHHHHHHh---CCCCC----HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhcc
Q psy208 340 LKFGYFSQHHVDQLDMNLRCVQLLEAA---FPGKP----QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMA 412 (443)
Q Consensus 340 ~~ig~~~Q~~~~~l~~~~~~~~~~~~~---~~~~~----~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~ 412 (443)
..++|++|++. +....++.+++... ..... ...+..++..+++. +..++++.+|||||||||+||++++.
T Consensus 84 ~~i~~v~q~~~--~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgGq~qrv~laral~~ 160 (269)
T PRK11831 84 KRMSMLFQSGA--LFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLR-GAAKLMPSELSGGMARRAALARAIAL 160 (269)
T ss_pred hcEEEEecccc--cCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCCh-hhhhCChhhCCHHHHHHHHHHHHHhc
Confidence 24899999853 34445666665421 11111 23456788999996 56788999999999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 413 APNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 413 ~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
+|++|||||||++||+.+++.+.+.|.++
T Consensus 161 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~ 189 (269)
T PRK11831 161 EPDLIMFDEPFVGQDPITMGVLVKLISEL 189 (269)
T ss_pred CCCEEEEcCCCccCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999998865
No 76
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=100.00 E-value=1.1e-34 Score=270.83 Aligned_cols=161 Identities=24% Similarity=0.367 Sum_probs=135.6
Q ss_pred EEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc----------eEEEEec
Q psy208 277 LQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN----------LKFGYFS 346 (443)
Q Consensus 277 l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~----------~~ig~~~ 346 (443)
|+++|+++.|+ ++++|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+. ..++|++
T Consensus 1 l~~~~l~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~ 79 (198)
T TIGR01189 1 LAARNLACSRG-ERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNILYLG 79 (198)
T ss_pred CEEEEEEEEEC-CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccchHHhhhheEEec
Confidence 47899999996 568999999999999999999999999999999999999999999987542 2589999
Q ss_pred cCcccccccchhHHHHHHHh--CCCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCC
Q psy208 347 QHHVDQLDMNLRCVQLLEAA--FPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTN 424 (443)
Q Consensus 347 Q~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn 424 (443)
|++. +....++.+++... ........+..+++.+++. +..++++.+||||||||++||++++.+|++|||||||+
T Consensus 80 q~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~ 156 (198)
T TIGR01189 80 HLPG--LKPELSALENLHFWAAIHGGAQRTIEDALAAVGLT-GFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTT 156 (198)
T ss_pred cCcc--cccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCH-HHhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 8742 34445666665321 1112234577889999986 45788999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHccc
Q psy208 425 HLDIETIEALGKAINKY 441 (443)
Q Consensus 425 ~LD~~s~~~l~~~L~~~ 441 (443)
+||+.+++.+.++|.++
T Consensus 157 ~LD~~~~~~l~~~l~~~ 173 (198)
T TIGR01189 157 ALDKAGVALLAGLLRAH 173 (198)
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 99999999999999875
No 77
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=100.00 E-value=8e-35 Score=281.78 Aligned_cols=166 Identities=25% Similarity=0.370 Sum_probs=136.1
Q ss_pred CeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc---------------
Q psy208 275 PILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN--------------- 339 (443)
Q Consensus 275 ~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~--------------- 339 (443)
++|+++||+++|+ ++.+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+.+.
T Consensus 2 ~~l~~~~l~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (253)
T TIGR02323 2 PLLQVSGLSKSYG-GGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAER 80 (253)
T ss_pred ceEEEeeeEEEeC-CceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHH
Confidence 5799999999996 467999999999999999999999999999999999999999999987531
Q ss_pred -----eEEEEeccCcccccccchhHHHHHHH---hCC--C--CCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHH
Q psy208 340 -----LKFGYFSQHHVDQLDMNLRCVQLLEA---AFP--G--KPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFA 407 (443)
Q Consensus 340 -----~~ig~~~Q~~~~~l~~~~~~~~~~~~---~~~--~--~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA 407 (443)
..++|++|++...+....++.+.+.. .+. . .....+..++..+++.....++++..|||||||||+||
T Consensus 81 ~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~la 160 (253)
T TIGR02323 81 RRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIA 160 (253)
T ss_pred HHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHHHH
Confidence 13899999863333333343333321 111 0 12346678899999964567899999999999999999
Q ss_pred HHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 408 RMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 408 ~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
|||+.+|++|||||||+|||+.+++.+.+.|.++
T Consensus 161 ral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~ 194 (253)
T TIGR02323 161 RNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGL 194 (253)
T ss_pred HHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999988764
No 78
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.7e-35 Score=275.78 Aligned_cols=161 Identities=30% Similarity=0.436 Sum_probs=134.9
Q ss_pred EEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcC----------ceEEEEec
Q psy208 277 LQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR----------NLKFGYFS 346 (443)
Q Consensus 277 l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~----------~~~ig~~~ 346 (443)
|+++|++++|+ ++++|+|+||+|.+| +++|+||||||||||+++|+|+++|++|+|.+.+ ...++|++
T Consensus 1 i~~~~~~~~~~-~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~ 78 (211)
T cd03264 1 LQLENLTKRYG-KKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLP 78 (211)
T ss_pred CEEEEEEEEEC-CEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhheEEec
Confidence 47899999995 467999999999999 9999999999999999999999999999998864 23589999
Q ss_pred cCcccccccchhHHHHHHH--hCCCC----CHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEe
Q psy208 347 QHHVDQLDMNLRCVQLLEA--AFPGK----PQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLD 420 (443)
Q Consensus 347 Q~~~~~l~~~~~~~~~~~~--~~~~~----~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLD 420 (443)
|++. +....++.+++.. ..... ..+.+..++..+++. +..++++.+||||||||++||++++.+|++||||
T Consensus 79 q~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~la~al~~~p~llllD 155 (211)
T cd03264 79 QEFG--VYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLG-DRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVD 155 (211)
T ss_pred CCCc--ccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCH-HHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 9863 3344566655532 11111 134567789999986 4668899999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHcccc
Q psy208 421 EPTNHLDIETIEALGKAINKYT 442 (443)
Q Consensus 421 EPTn~LD~~s~~~l~~~L~~~~ 442 (443)
|||++||+.+++.+.+.|.++.
T Consensus 156 EPt~~LD~~~~~~l~~~l~~~~ 177 (211)
T cd03264 156 EPTAGLDPEERIRFRNLLSELG 177 (211)
T ss_pred CCcccCCHHHHHHHHHHHHHHh
Confidence 9999999999999999998763
No 79
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=100.00 E-value=5.2e-35 Score=280.02 Aligned_cols=161 Identities=31% Similarity=0.431 Sum_probs=135.0
Q ss_pred EEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc------------eEEEE
Q psy208 277 LQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN------------LKFGY 344 (443)
Q Consensus 277 l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------------~~ig~ 344 (443)
|+++|++++|+ ++++|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+. ..++|
T Consensus 1 l~~~~l~~~~~-~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (236)
T cd03219 1 LEVRGLTKRFG-GLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGR 79 (236)
T ss_pred CeeeeeEEEEC-CEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEE
Confidence 46899999996 467999999999999999999999999999999999999999999987531 24899
Q ss_pred eccCcccccccchhHHHHHHHhC---CC-------------CCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHH
Q psy208 345 FSQHHVDQLDMNLRCVQLLEAAF---PG-------------KPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFAR 408 (443)
Q Consensus 345 ~~Q~~~~~l~~~~~~~~~~~~~~---~~-------------~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~ 408 (443)
++|++. +....++.+++.... .. .....+.+++..+|+. ...++++.+|||||||||+||+
T Consensus 80 v~q~~~--l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~la~ 156 (236)
T cd03219 80 TFQIPR--LFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLA-DLADRPAGELSYGQQRRLEIAR 156 (236)
T ss_pred Eecccc--cccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCcc-chhhCChhhCCHHHHHHHHHHH
Confidence 999863 444456666653211 11 0123467789999986 5678999999999999999999
Q ss_pred HhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 409 MCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 409 al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
+++.+|++|||||||++||+.++..+.+.|.++
T Consensus 157 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~ 189 (236)
T cd03219 157 ALATDPKLLLLDEPAAGLNPEETEELAELIREL 189 (236)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999875
No 80
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.3e-35 Score=280.69 Aligned_cols=162 Identities=28% Similarity=0.448 Sum_probs=134.9
Q ss_pred EEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc--------------eEE
Q psy208 277 LQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN--------------LKF 342 (443)
Q Consensus 277 l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~--------------~~i 342 (443)
|+++||+++|++++++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+. ..+
T Consensus 1 l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i 80 (241)
T cd03256 1 IEVENLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQI 80 (241)
T ss_pred CEEeeEEEecCCccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhcc
Confidence 478999999963267999999999999999999999999999999999999999999987531 248
Q ss_pred EEeccCcccccccchhHHHHHHHhC--------------CCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHH
Q psy208 343 GYFSQHHVDQLDMNLRCVQLLEAAF--------------PGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFAR 408 (443)
Q Consensus 343 g~~~Q~~~~~l~~~~~~~~~~~~~~--------------~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~ 408 (443)
+|++|++. +....++.+++.... .....+.+..++..+++. ...++++.+|||||||||+||+
T Consensus 81 ~~~~q~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~la~ 157 (241)
T cd03256 81 GMIFQQFN--LIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLL-DKAYQRADQLSGGQQQRVAIAR 157 (241)
T ss_pred EEEcccCc--ccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCCh-hhhCCCcccCCHHHHHHHHHHH
Confidence 99999863 344456666653211 011134567789999986 5678899999999999999999
Q ss_pred HhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 409 MCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 409 al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
+++.+|++|||||||++||+.+++.+.+.|.++
T Consensus 158 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~ 190 (241)
T cd03256 158 ALMQQPKLILADEPVASLDPASSRQVMDLLKRI 190 (241)
T ss_pred HHhcCCCEEEEeCccccCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999765
No 81
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=100.00 E-value=8.8e-35 Score=283.93 Aligned_cols=167 Identities=22% Similarity=0.341 Sum_probs=136.8
Q ss_pred CeEEEeeeEEEeCC--------CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-------
Q psy208 275 PILQLSEVNFEYVP--------GKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN------- 339 (443)
Q Consensus 275 ~~l~~~~l~~~y~~--------~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------- 339 (443)
++|+++||+++|++ .+++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+.+.
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~ 82 (267)
T PRK15112 3 TLLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDY 82 (267)
T ss_pred ceEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCch
Confidence 57999999999952 246999999999999999999999999999999999999999999987531
Q ss_pred ----eEEEEeccCcccccccchhHHHHHHH---hCCCC----CHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHH
Q psy208 340 ----LKFGYFSQHHVDQLDMNLRCVQLLEA---AFPGK----PQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFAR 408 (443)
Q Consensus 340 ----~~ig~~~Q~~~~~l~~~~~~~~~~~~---~~~~~----~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~ 408 (443)
..++|++|++...+....++.+++.. ..... ..+.+..++..+++.....++++.+|||||||||+||+
T Consensus 83 ~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~lar 162 (267)
T PRK15112 83 SYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLAR 162 (267)
T ss_pred hhHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHHH
Confidence 25899999863223344454444421 11111 12356788999999655678889999999999999999
Q ss_pred HhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 409 MCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 409 al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
+++.+|++|||||||++||+.+++.+.+.|.++
T Consensus 163 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~ 195 (267)
T PRK15112 163 ALILRPKVIIADEALASLDMSMRSQLINLMLEL 195 (267)
T ss_pred HHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999875
No 82
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=100.00 E-value=1.2e-34 Score=276.03 Aligned_cols=164 Identities=29% Similarity=0.393 Sum_probs=138.2
Q ss_pred CCeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-----------eEE
Q psy208 274 PPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-----------LKF 342 (443)
Q Consensus 274 ~~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~i 342 (443)
+++|+++||++.|+ ++++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+. ..+
T Consensus 5 ~~~i~~~~l~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 83 (225)
T PRK10247 5 SPLLQLQNVGYLAG-DAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQV 83 (225)
T ss_pred CceEEEeccEEeeC-CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhcc
Confidence 35799999999996 567999999999999999999999999999999999999999999987642 358
Q ss_pred EEeccCcccccccchhHHHHHHH---hCCC-CCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEE
Q psy208 343 GYFSQHHVDQLDMNLRCVQLLEA---AFPG-KPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLV 418 (443)
Q Consensus 343 g~~~Q~~~~~l~~~~~~~~~~~~---~~~~-~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLi 418 (443)
+|++|++. +.. .++.+++.. .... .....+..++..+++.....++++.+|||||+|||+||++++.+|++||
T Consensus 84 ~~~~q~~~--l~~-~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lll 160 (225)
T PRK10247 84 SYCAQTPT--LFG-DTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLL 160 (225)
T ss_pred EEEecccc--ccc-ccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999863 222 366666532 1111 1234567889999996456789999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHccc
Q psy208 419 LDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 419 LDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
|||||++||+.+++.+.+.|.++
T Consensus 161 lDEPt~~LD~~~~~~l~~~l~~~ 183 (225)
T PRK10247 161 LDEITSALDESNKHNVNEIIHRY 183 (225)
T ss_pred EeCCcccCCHHHHHHHHHHHHHH
Confidence 99999999999999999998875
No 83
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=100.00 E-value=9.9e-35 Score=278.37 Aligned_cols=162 Identities=28% Similarity=0.444 Sum_probs=136.2
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc----------eEEEEe
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN----------LKFGYF 345 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~----------~~ig~~ 345 (443)
+|+++|++++|+ ++++|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+. ..++|+
T Consensus 1 ~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~~ 79 (236)
T TIGR03864 1 ALEVAGLSFAYG-ARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGVV 79 (236)
T ss_pred CEEEEeeEEEEC-CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEEEe
Confidence 478999999996 568999999999999999999999999999999999999999999987542 258999
Q ss_pred ccCcccccccchhHHHHHHHh--CCCC----CHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEE
Q psy208 346 SQHHVDQLDMNLRCVQLLEAA--FPGK----PQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVL 419 (443)
Q Consensus 346 ~Q~~~~~l~~~~~~~~~~~~~--~~~~----~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiL 419 (443)
+|++. +....++.+++... .... ....+.+++..+|+. ...++++.+|||||+||++||++++.+|++|||
T Consensus 80 ~q~~~--~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LS~G~~qrl~laral~~~p~llll 156 (236)
T TIGR03864 80 FQQPT--LDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLA-ERADDKVRELNGGHRRRVEIARALLHRPALLLL 156 (236)
T ss_pred CCCCC--CcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCh-hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99863 33445666665321 1111 123567788999986 567889999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHccc
Q psy208 420 DEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 420 DEPTn~LD~~s~~~l~~~L~~~ 441 (443)
||||++||+.+++.+.+.|.++
T Consensus 157 DEP~~~LD~~~~~~l~~~l~~~ 178 (236)
T TIGR03864 157 DEPTVGLDPASRAAIVAHVRAL 178 (236)
T ss_pred cCCccCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999765
No 84
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=100.00 E-value=6.2e-35 Score=273.70 Aligned_cols=159 Identities=27% Similarity=0.373 Sum_probs=133.2
Q ss_pred EeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc---------------eEEE
Q psy208 279 LSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN---------------LKFG 343 (443)
Q Consensus 279 ~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~---------------~~ig 343 (443)
++||++.|+ ++++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+. ..++
T Consensus 1 i~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~ 79 (206)
T TIGR03608 1 LKNISKKFG-DKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLG 79 (206)
T ss_pred CcceEEEEC-CEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCee
Confidence 479999996 468999999999999999999999999999999999999999999977532 2589
Q ss_pred EeccCcccccccchhHHHHHHHh--CCCC----CHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeE
Q psy208 344 YFSQHHVDQLDMNLRCVQLLEAA--FPGK----PQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFL 417 (443)
Q Consensus 344 ~~~Q~~~~~l~~~~~~~~~~~~~--~~~~----~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lL 417 (443)
|++|++. +....++.+++... .... ..+.+.+++..+|+. ...++++.+|||||+||++||++|+.+|++|
T Consensus 80 ~~~q~~~--~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~lS~G~~qr~~laral~~~p~ll 156 (206)
T TIGR03608 80 YLFQNFA--LIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLN-LKLKQKIYELSGGEQQRVALARAILKDPPLI 156 (206)
T ss_pred EEecchh--hccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCch-hhhcCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 9999853 34445666655321 1111 234567889999985 5678899999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHccc
Q psy208 418 VLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 418 iLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
||||||++||+.+++.+.+.|+++
T Consensus 157 llDEPt~~LD~~~~~~l~~~l~~~ 180 (206)
T TIGR03608 157 LADEPTGSLDPKNRDEVLDLLLEL 180 (206)
T ss_pred EEeCCcCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999865
No 85
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.6e-34 Score=271.66 Aligned_cols=162 Identities=29% Similarity=0.464 Sum_probs=136.8
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc--------eEEEEecc
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN--------LKFGYFSQ 347 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~--------~~ig~~~Q 347 (443)
+|+++|+++.|+ ++.+|+|+||+|.+|++++|+|+||||||||+++|+|+++|++|+|.+.+. ..++|++|
T Consensus 2 ~l~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (207)
T PRK13539 2 MLEGEDLACVRG-GRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHYLGH 80 (207)
T ss_pred EEEEEeEEEEEC-CeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcchhhHhhcEEecC
Confidence 689999999996 467999999999999999999999999999999999999999999988652 14789987
Q ss_pred CcccccccchhHHHHHHH--hCCCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCC
Q psy208 348 HHVDQLDMNLRCVQLLEA--AFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNH 425 (443)
Q Consensus 348 ~~~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~ 425 (443)
.+. +....++.+++.. .........+.+++..+|+. ...++++++||||||||++||++++.+|++|||||||++
T Consensus 81 ~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~ 157 (207)
T PRK13539 81 RNA--MKPALTVAENLEFWAAFLGGEELDIAAALEAVGLA-PLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAA 157 (207)
T ss_pred CCc--CCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCH-HHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 642 3334566665532 12223345678899999996 466889999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHccc
Q psy208 426 LDIETIEALGKAINKY 441 (443)
Q Consensus 426 LD~~s~~~l~~~L~~~ 441 (443)
||+.+++.+.+.|.++
T Consensus 158 LD~~~~~~l~~~l~~~ 173 (207)
T PRK13539 158 LDAAAVALFAELIRAH 173 (207)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999999865
No 86
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=100.00 E-value=6.6e-35 Score=274.94 Aligned_cols=161 Identities=27% Similarity=0.398 Sum_probs=135.1
Q ss_pred EEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-------------eEEE
Q psy208 277 LQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-------------LKFG 343 (443)
Q Consensus 277 l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-------------~~ig 343 (443)
|+++|++++|+ ++++|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+. ..++
T Consensus 1 l~~~~l~~~~~-~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~ 79 (213)
T cd03262 1 IEIKNLHKSFG-DFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVG 79 (213)
T ss_pred CEEEEEEEEEC-CeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcce
Confidence 47899999996 468999999999999999999999999999999999999999999987542 2489
Q ss_pred EeccCcccccccchhHHHHHHHh---CCCCC----HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCe
Q psy208 344 YFSQHHVDQLDMNLRCVQLLEAA---FPGKP----QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNF 416 (443)
Q Consensus 344 ~~~Q~~~~~l~~~~~~~~~~~~~---~~~~~----~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~l 416 (443)
|++|++. +....++.+++... ..... ...+.+++..+|+. ...++++.+|||||+||++||++++.+|++
T Consensus 80 ~~~q~~~--~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~la~al~~~p~l 156 (213)
T cd03262 80 MVFQQFN--LFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLA-DKADAYPAQLSGGQQQRVAIARALAMNPKV 156 (213)
T ss_pred EEecccc--cCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCH-hHhhhCccccCHHHHHHHHHHHHHhcCCCE
Confidence 9999863 34445666665321 11111 23467788899986 467899999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 417 LVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 417 LiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
|||||||++||+.+++.+.+.|.++
T Consensus 157 lllDEP~~~LD~~~~~~l~~~l~~~ 181 (213)
T cd03262 157 MLFDEPTSALDPELVGEVLDVMKDL 181 (213)
T ss_pred EEEeCCccCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999875
No 87
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.7e-34 Score=272.87 Aligned_cols=165 Identities=26% Similarity=0.446 Sum_probs=138.3
Q ss_pred CCCeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc--------eEEEE
Q psy208 273 SPPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN--------LKFGY 344 (443)
Q Consensus 273 ~~~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~--------~~ig~ 344 (443)
++++|+++|++++|+ ++++|+++||+|.+|++++|+|+||||||||+++|+|+++|++|+|.+.+. ..++|
T Consensus 8 ~~~~l~~~~l~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~~~~~i~~ 86 (214)
T PRK13543 8 APPLLAAHALAFSRN-EEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAY 86 (214)
T ss_pred CcceEEEeeEEEecC-CceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchhhhhceEE
Confidence 456899999999996 467999999999999999999999999999999999999999999988642 24899
Q ss_pred eccCcccccccchhHHHHHHHh--C-CCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeC
Q psy208 345 FSQHHVDQLDMNLRCVQLLEAA--F-PGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDE 421 (443)
Q Consensus 345 ~~Q~~~~~l~~~~~~~~~~~~~--~-~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDE 421 (443)
++|++. +....++.+++... . .....+.+..++..+++. +..++++..||||||||++||++++.+|++|||||
T Consensus 87 ~~q~~~--~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE 163 (214)
T PRK13543 87 LGHLPG--LKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLA-GYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDE 163 (214)
T ss_pred eecCcc--cccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCCh-hhccCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 998753 34444666655321 1 111234567889999986 45789999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHccc
Q psy208 422 PTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 422 PTn~LD~~s~~~l~~~L~~~ 441 (443)
||++||+.+++.+.+.|.++
T Consensus 164 Pt~~LD~~~~~~l~~~l~~~ 183 (214)
T PRK13543 164 PYANLDLEGITLVNRMISAH 183 (214)
T ss_pred CcccCCHHHHHHHHHHHHHH
Confidence 99999999999999999765
No 88
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=2.3e-34 Score=269.14 Aligned_cols=162 Identities=26% Similarity=0.378 Sum_probs=136.9
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc----------eEEEEe
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN----------LKFGYF 345 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~----------~~ig~~ 345 (443)
+|+++|++++|+ ++++|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+. ..++|+
T Consensus 1 ml~~~~l~~~~~-~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~i~~~ 79 (200)
T PRK13540 1 MLDVIELDFDYH-DQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLCFV 79 (200)
T ss_pred CEEEEEEEEEeC-CeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCHHHHHhheEEe
Confidence 478999999996 467999999999999999999999999999999999999999999988542 258999
Q ss_pred ccCcccccccchhHHHHHHHhC-CCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCC
Q psy208 346 SQHHVDQLDMNLRCVQLLEAAF-PGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTN 424 (443)
Q Consensus 346 ~Q~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn 424 (443)
+|++. +.+..++.+++.... .......+.+++..+++. +..++++..|||||+||++|||+++.+|++|||||||+
T Consensus 80 ~q~~~--~~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~~rv~laral~~~p~~lilDEP~~ 156 (200)
T PRK13540 80 GHRSG--INPYLTLRENCLYDIHFSPGAVGITELCRLFSLE-HLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLV 156 (200)
T ss_pred ccccc--cCcCCCHHHHHHHHHhcCcchHHHHHHHHHcCCc-hhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 98753 344556666654321 112234678889999986 45678899999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHccc
Q psy208 425 HLDIETIEALGKAINKY 441 (443)
Q Consensus 425 ~LD~~s~~~l~~~L~~~ 441 (443)
+||+.+++.+.+.|.++
T Consensus 157 ~LD~~~~~~l~~~l~~~ 173 (200)
T PRK13540 157 ALDELSLLTIITKIQEH 173 (200)
T ss_pred ccCHHHHHHHHHHHHHH
Confidence 99999999999999865
No 89
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-34 Score=292.21 Aligned_cols=163 Identities=29% Similarity=0.396 Sum_probs=137.7
Q ss_pred eEEEeeeEEEeCC---CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcC--------------
Q psy208 276 ILQLSEVNFEYVP---GKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR-------------- 338 (443)
Q Consensus 276 ~l~~~~l~~~y~~---~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-------------- 338 (443)
||+++||+++|++ .+++|+|+||+|++|++++|+||||||||||+|+|+|+++|++|+|.+.+
T Consensus 1 mi~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 80 (343)
T PRK11153 1 MIELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKA 80 (343)
T ss_pred CEEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHH
Confidence 5899999999962 35799999999999999999999999999999999999999999998753
Q ss_pred ceEEEEeccCcccccccchhHHHHHHHh--CCCCC----HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhcc
Q psy208 339 NLKFGYFSQHHVDQLDMNLRCVQLLEAA--FPGKP----QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMA 412 (443)
Q Consensus 339 ~~~ig~~~Q~~~~~l~~~~~~~~~~~~~--~~~~~----~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~ 412 (443)
...+||++|++. +....++.+++... ..... ...+..++..+|+. +..++++.+|||||||||+|||||+.
T Consensus 81 ~~~ig~v~q~~~--l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~-~~~~~~~~~LSgGq~qRv~lAraL~~ 157 (343)
T PRK11153 81 RRQIGMIFQHFN--LLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLS-DKADRYPAQLSGGQKQRVAIARALAS 157 (343)
T ss_pred hcCEEEEeCCCc--cCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-hhhhCChhhCCHHHHHHHHHHHHHHc
Confidence 135999999863 44455666665421 11112 23567789999996 56789999999999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 413 APNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 413 ~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
+|++|||||||++||+.++..+.+.|.++
T Consensus 158 ~p~iLlLDEPts~LD~~~~~~l~~~L~~l 186 (343)
T PRK11153 158 NPKVLLCDEATSALDPATTRSILELLKDI 186 (343)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999875
No 90
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=100.00 E-value=1.1e-34 Score=282.99 Aligned_cols=166 Identities=24% Similarity=0.417 Sum_probs=137.4
Q ss_pred eEEEeeeEEEeCC--------CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc--------
Q psy208 276 ILQLSEVNFEYVP--------GKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-------- 339 (443)
Q Consensus 276 ~l~~~~l~~~y~~--------~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-------- 339 (443)
+|+++||++.|++ ++++|+|+||+|.+|++++|+|+||||||||+++|+|+++|++|+|.+.+.
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~ 81 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRK 81 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHH
Confidence 6899999999953 357999999999999999999999999999999999999999999987531
Q ss_pred ------eEEEEeccCcccccccchhHHHHHHH---hCCC----CCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHH
Q psy208 340 ------LKFGYFSQHHVDQLDMNLRCVQLLEA---AFPG----KPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAF 406 (443)
Q Consensus 340 ------~~ig~~~Q~~~~~l~~~~~~~~~~~~---~~~~----~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~l 406 (443)
..++|++|++...+....++.+++.. .... .....+..+++.+|+.....++++..||||||||++|
T Consensus 82 ~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~l 161 (265)
T TIGR02769 82 QRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINI 161 (265)
T ss_pred HHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHH
Confidence 25999999863234444566555421 1111 1234567889999996456788999999999999999
Q ss_pred HHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 407 ARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 407 A~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
|||++.+|++|||||||++||+.+++.+.+.|.++
T Consensus 162 aral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~ 196 (265)
T TIGR02769 162 ARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKL 196 (265)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999765
No 91
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-34 Score=293.32 Aligned_cols=164 Identities=23% Similarity=0.401 Sum_probs=141.6
Q ss_pred CCeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc---------eEEEE
Q psy208 274 PPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN---------LKFGY 344 (443)
Q Consensus 274 ~~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~---------~~ig~ 344 (443)
+++|+++||+++|+ +..+|+|+||+|.+|++++|+||||||||||||+|+|+++|++|+|.+++. ..+||
T Consensus 4 ~~~l~~~~l~~~~~-~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~ 82 (351)
T PRK11432 4 KNFVVLKNITKRFG-SNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDICM 82 (351)
T ss_pred CcEEEEEeEEEEEC-CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEE
Confidence 45899999999996 567999999999999999999999999999999999999999999988642 46999
Q ss_pred eccCcccccccchhHHHHHHHhCC--CCC----HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEE
Q psy208 345 FSQHHVDQLDMNLRCVQLLEAAFP--GKP----QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLV 418 (443)
Q Consensus 345 ~~Q~~~~~l~~~~~~~~~~~~~~~--~~~----~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLi 418 (443)
++|++ .+.+..++.+++..... ... .+.+..++..+++. ...++++.+|||||||||+|||||+.+|++||
T Consensus 83 vfQ~~--~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~-~~~~r~~~~LSgGq~QRVaLARaL~~~P~lLL 159 (351)
T PRK11432 83 VFQSY--ALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLA-GFEDRYVDQISGGQQQRVALARALILKPKVLL 159 (351)
T ss_pred EeCCc--ccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCc-hhhcCChhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence 99986 35666787887753211 111 34667889999996 57789999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHccc
Q psy208 419 LDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 419 LDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
|||||++||+.+++.+.+.|+++
T Consensus 160 LDEP~s~LD~~~r~~l~~~l~~l 182 (351)
T PRK11432 160 FDEPLSNLDANLRRSMREKIREL 182 (351)
T ss_pred EcCCcccCCHHHHHHHHHHHHHH
Confidence 99999999999999999988764
No 92
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=100.00 E-value=1.4e-34 Score=275.61 Aligned_cols=161 Identities=24% Similarity=0.324 Sum_probs=133.5
Q ss_pred EEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCC-----CCCCceEEEcCc------------
Q psy208 277 LQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGII-----SPTAGTRTVHRN------------ 339 (443)
Q Consensus 277 l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~-----~p~~G~i~~~~~------------ 339 (443)
|+++||+++|+ ++++|+|+||+|.+|++++|+||||||||||+++|+|++ +|++|+|.+.+.
T Consensus 1 i~~~~l~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~ 79 (227)
T cd03260 1 IELRDLNVYYG-DKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLEL 79 (227)
T ss_pred CEEEEEEEEcC-CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHH
Confidence 47899999996 468999999999999999999999999999999999999 999999987541
Q ss_pred -eEEEEeccCcccccccchhHHHHHHHh--CCCC-----CHHHHHHHHhcCCCChhhhhcc--CCCCCHHHHHHHHHHHH
Q psy208 340 -LKFGYFSQHHVDQLDMNLRCVQLLEAA--FPGK-----PQEEYRRQLGGFGVSGDLALQF--VGSLSGGQKSRVAFARM 409 (443)
Q Consensus 340 -~~ig~~~Q~~~~~l~~~~~~~~~~~~~--~~~~-----~~~~~~~~L~~~gl~~~~~~~~--~~~LSgGekqRl~lA~a 409 (443)
..++|++|++. +. ..++.+++... .... ....+..++..+|+.. ..+++ +.+||||||||++||++
T Consensus 80 ~~~i~~~~q~~~--~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~~LSgG~~qrv~la~a 155 (227)
T cd03260 80 RRRVGMVFQKPN--PF-PGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWD-EVKDRLHALGLSGGQQQRLCLARA 155 (227)
T ss_pred HhhEEEEecCch--hc-cccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCCh-HHhccCCcccCCHHHHHHHHHHHH
Confidence 24899999863 33 45666665421 1111 1345678899999964 44555 59999999999999999
Q ss_pred hccCCCeEEEeCCCCCCCHHHHHHHHHHHcccc
Q psy208 410 CMAAPNFLVLDEPTNHLDIETIEALGKAINKYT 442 (443)
Q Consensus 410 l~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~~ 442 (443)
++.+|++|||||||++||+.+++.+.+.|.++.
T Consensus 156 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~ 188 (227)
T cd03260 156 LANEPEVLLLDEPTSALDPISTAKIEELIAELK 188 (227)
T ss_pred HhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999998763
No 93
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.1e-34 Score=277.09 Aligned_cols=162 Identities=31% Similarity=0.429 Sum_probs=137.1
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-----------eEEEE
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-----------LKFGY 344 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~ig~ 344 (443)
.|+++|++++|+ ++++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+. ..++|
T Consensus 3 ~l~~~~l~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~ 81 (241)
T PRK14250 3 EIEFKEVSYSSF-GKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGM 81 (241)
T ss_pred eEEEEeEEEEeC-CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEEE
Confidence 589999999995 567999999999999999999999999999999999999999999987641 35899
Q ss_pred eccCcccccccchhHHHHHHHh--CCCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCC
Q psy208 345 FSQHHVDQLDMNLRCVQLLEAA--FPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEP 422 (443)
Q Consensus 345 ~~Q~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEP 422 (443)
++|++. +.. .++.+++... .......++..++..+++..+..++++.+||||||||++||+|++.+|++||||||
T Consensus 82 ~~q~~~--~~~-~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP 158 (241)
T PRK14250 82 VFQQPH--LFE-GTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEP 158 (241)
T ss_pred EecCch--hch-hhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 999863 222 4666665421 11222346778899999964567889999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHccc
Q psy208 423 TNHLDIETIEALGKAINKY 441 (443)
Q Consensus 423 Tn~LD~~s~~~l~~~L~~~ 441 (443)
|++||+.+++.+.+.|.++
T Consensus 159 t~~LD~~~~~~l~~~l~~~ 177 (241)
T PRK14250 159 TSALDPTSTEIIEELIVKL 177 (241)
T ss_pred cccCCHHHHHHHHHHHHHH
Confidence 9999999999999998764
No 94
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-34 Score=284.38 Aligned_cols=165 Identities=29% Similarity=0.375 Sum_probs=138.1
Q ss_pred CeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-----------eEEE
Q psy208 275 PILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-----------LKFG 343 (443)
Q Consensus 275 ~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~ig 343 (443)
++|+++|+++.|+++.++|+|+||+|.+|++++|+|+||||||||+++|+|+++|++|+|.+.+. ..+|
T Consensus 3 ~~l~~~~l~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 82 (274)
T PRK13647 3 NIIEVEDLHFRYKDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVG 82 (274)
T ss_pred ceEEEEEEEEEeCCCCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEE
Confidence 37999999999964467999999999999999999999999999999999999999999987641 3589
Q ss_pred EeccCcccccccchhHHHHHHHh--CCCCC----HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeE
Q psy208 344 YFSQHHVDQLDMNLRCVQLLEAA--FPGKP----QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFL 417 (443)
Q Consensus 344 ~~~Q~~~~~l~~~~~~~~~~~~~--~~~~~----~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lL 417 (443)
|++|++...+ ...++.+++... ..... ...+..+++.+|+. +..++++.+|||||||||+||+||+.+|++|
T Consensus 83 ~v~q~~~~~~-~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgG~~qrv~laraL~~~p~ll 160 (274)
T PRK13647 83 LVFQDPDDQV-FSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMW-DFRDKPPYHLSYGQKKRVAIAGVLAMDPDVI 160 (274)
T ss_pred EEecChhhhh-ccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCH-HHhcCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 9999863222 234666666421 11111 24567889999996 5688999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHccc
Q psy208 418 VLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 418 iLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
||||||++||+.++..+.+.|.++
T Consensus 161 llDEPt~~LD~~~~~~l~~~l~~~ 184 (274)
T PRK13647 161 VLDEPMAYLDPRGQETLMEILDRL 184 (274)
T ss_pred EEECCCcCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999765
No 95
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=2.4e-34 Score=285.61 Aligned_cols=163 Identities=26% Similarity=0.436 Sum_probs=138.9
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc----------eEEEEe
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN----------LKFGYF 345 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~----------~~ig~~ 345 (443)
+++++|++++|+ ++.+|+|+||+|.+|+++||+||||||||||+|+|+|+++|++|+|.+.+. ..+||+
T Consensus 2 ~l~~~~l~~~~~-~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig~~ 80 (301)
T TIGR03522 2 SIRVSSLTKLYG-TQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGYL 80 (301)
T ss_pred EEEEEEEEEEEC-CEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhceEEe
Confidence 489999999996 578999999999999999999999999999999999999999999987542 259999
Q ss_pred ccCcccccccchhHHHHHHH--hCCCCC----HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEE
Q psy208 346 SQHHVDQLDMNLRCVQLLEA--AFPGKP----QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVL 419 (443)
Q Consensus 346 ~Q~~~~~l~~~~~~~~~~~~--~~~~~~----~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiL 419 (443)
+|++. +....++.+++.. ...+.. ...+..++..+|+. ...+++++.||||||||++||+|++.+|++|||
T Consensus 81 ~q~~~--l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LS~G~~qrv~la~al~~~p~lliL 157 (301)
T TIGR03522 81 PEHNP--LYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLR-PEQHKKIGQLSKGYRQRVGLAQALIHDPKVLIL 157 (301)
T ss_pred cCCCC--CCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCc-hHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99863 4455566666542 111211 34577889999996 457899999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHcccc
Q psy208 420 DEPTNHLDIETIEALGKAINKYT 442 (443)
Q Consensus 420 DEPTn~LD~~s~~~l~~~L~~~~ 442 (443)
||||+|||+.+++.+.+.|+++.
T Consensus 158 DEPt~gLD~~~~~~l~~~l~~~~ 180 (301)
T TIGR03522 158 DEPTTGLDPNQLVEIRNVIKNIG 180 (301)
T ss_pred cCCcccCCHHHHHHHHHHHHHhc
Confidence 99999999999999999998764
No 96
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.3e-34 Score=276.81 Aligned_cols=163 Identities=30% Similarity=0.417 Sum_probs=136.1
Q ss_pred eEEEeeeEEEeCCC---CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-------------
Q psy208 276 ILQLSEVNFEYVPG---KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN------------- 339 (443)
Q Consensus 276 ~l~~~~l~~~y~~~---~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------------- 339 (443)
+|+++|++++|++. +++|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+.
T Consensus 1 ~i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (233)
T cd03258 1 MIELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKA 80 (233)
T ss_pred CeEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHH
Confidence 47899999999642 17999999999999999999999999999999999999999999987531
Q ss_pred -eEEEEeccCcccccccchhHHHHHHHh--CCCCC----HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhcc
Q psy208 340 -LKFGYFSQHHVDQLDMNLRCVQLLEAA--FPGKP----QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMA 412 (443)
Q Consensus 340 -~~ig~~~Q~~~~~l~~~~~~~~~~~~~--~~~~~----~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~ 412 (443)
..++|++|++. +....++.+++... ..... ...+.++++.+++. +..++++.+||||||||++||++++.
T Consensus 81 ~~~i~~~~q~~~--~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~la~al~~ 157 (233)
T cd03258 81 RRRIGMIFQHFN--LLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLE-DKADAYPAQLSGGQKQRVGIARALAN 157 (233)
T ss_pred HhheEEEccCcc--cCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCh-hhhhcChhhCCHHHHHHHHHHHHHhc
Confidence 35899999863 34445666665421 11111 23567889999986 56788999999999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 413 APNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 413 ~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
+|++|||||||++||+.++..+.+.|.++
T Consensus 158 ~p~lllLDEP~~~LD~~~~~~l~~~l~~~ 186 (233)
T cd03258 158 NPKVLLCDEATSALDPETTQSILALLRDI 186 (233)
T ss_pred CCCEEEecCCCCcCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999765
No 97
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=100.00 E-value=1.4e-34 Score=276.39 Aligned_cols=161 Identities=29% Similarity=0.473 Sum_probs=134.7
Q ss_pred EEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc------------eEEEE
Q psy208 277 LQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN------------LKFGY 344 (443)
Q Consensus 277 l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------------~~ig~ 344 (443)
|+++||++.|+ ++++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+. ..++|
T Consensus 1 l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (232)
T cd03218 1 LRAENLSKRYG-KRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGY 79 (232)
T ss_pred CeEEEEEEEeC-CEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEE
Confidence 47899999996 567999999999999999999999999999999999999999999987531 24899
Q ss_pred eccCcccccccchhHHHHHHHhC--CCCC----HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEE
Q psy208 345 FSQHHVDQLDMNLRCVQLLEAAF--PGKP----QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLV 418 (443)
Q Consensus 345 ~~Q~~~~~l~~~~~~~~~~~~~~--~~~~----~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLi 418 (443)
++|++. +....++.+++.... .... ...+..++..+++. +..++++.+||||||||++||++++.+|++||
T Consensus 80 ~~q~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrl~la~al~~~p~lll 156 (232)
T cd03218 80 LPQEAS--IFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHIT-HLRKSKASSLSGGERRRVEIARALATNPKFLL 156 (232)
T ss_pred ecCCcc--ccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCh-hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 999863 344456666654211 1111 23456788999986 56789999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHccc
Q psy208 419 LDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 419 LDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
|||||++||+.+++.+.+.|+++
T Consensus 157 lDEPt~~LD~~~~~~~~~~l~~~ 179 (232)
T cd03218 157 LDEPFAGVDPIAVQDIQKIIKIL 179 (232)
T ss_pred ecCCcccCCHHHHHHHHHHHHHH
Confidence 99999999999999999998765
No 98
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=1.5e-34 Score=277.91 Aligned_cols=164 Identities=29% Similarity=0.415 Sum_probs=137.7
Q ss_pred CeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc------------eEE
Q psy208 275 PILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN------------LKF 342 (443)
Q Consensus 275 ~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------------~~i 342 (443)
++|+++|+++.|+ ++++|+|+||+|.+|++++|+|+||||||||+++|+|+++|++|+|.+.+. ..+
T Consensus 1 ~~i~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (242)
T TIGR03411 1 PILYLEGLSVSFD-GFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGI 79 (242)
T ss_pred CeEEEEeeEEEcC-CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCe
Confidence 3689999999996 467999999999999999999999999999999999999999999987541 248
Q ss_pred EEeccCcccccccchhHHHHHHHhCC--------------CCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHH
Q psy208 343 GYFSQHHVDQLDMNLRCVQLLEAAFP--------------GKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFAR 408 (443)
Q Consensus 343 g~~~Q~~~~~l~~~~~~~~~~~~~~~--------------~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~ 408 (443)
+|++|++. +....++.+++..... ......+..++..+|+. ...++++.+|||||+||++||+
T Consensus 80 ~~~~q~~~--~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~Ge~qrv~lar 156 (242)
T TIGR03411 80 GRKFQKPT--VFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLA-DEADRLAGLLSHGQKQWLEIGM 156 (242)
T ss_pred eEeccccc--cCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCc-hhhcCChhhCCHHHHHHHHHHH
Confidence 99999853 4445566665543110 00133567889999986 5678899999999999999999
Q ss_pred HhccCCCeEEEeCCCCCCCHHHHHHHHHHHcccc
Q psy208 409 MCMAAPNFLVLDEPTNHLDIETIEALGKAINKYT 442 (443)
Q Consensus 409 al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~~ 442 (443)
|++.+|++|||||||++||+.++..+.+.|.++.
T Consensus 157 al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~ 190 (242)
T TIGR03411 157 LLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLA 190 (242)
T ss_pred HHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999998763
No 99
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=100.00 E-value=1.5e-34 Score=295.98 Aligned_cols=163 Identities=34% Similarity=0.488 Sum_probs=139.1
Q ss_pred CeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcC-----------ceEEE
Q psy208 275 PILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR-----------NLKFG 343 (443)
Q Consensus 275 ~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~ig 343 (443)
++|+++||+++|+ ++++|+++||+|.+|++++|+||||||||||||+|+|+++|++|+|.+.+ ...+|
T Consensus 2 ~~L~~~nls~~y~-~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig 80 (402)
T PRK09536 2 PMIDVSDLSVEFG-DTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVA 80 (402)
T ss_pred ceEEEeeEEEEEC-CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceE
Confidence 4799999999996 57899999999999999999999999999999999999999999998754 13599
Q ss_pred EeccCcccccccchhHHHHHHHh-------CC---CCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccC
Q psy208 344 YFSQHHVDQLDMNLRCVQLLEAA-------FP---GKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAA 413 (443)
Q Consensus 344 ~~~Q~~~~~l~~~~~~~~~~~~~-------~~---~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~ 413 (443)
|++|++. +....++.+++... +. ....+.+..+++.+++. +..++++.+||||||||++|||||+++
T Consensus 81 ~v~q~~~--l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~-~~~~~~~~~LSgGerQRv~IArAL~~~ 157 (402)
T PRK09536 81 SVPQDTS--LSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVA-QFADRPVTSLSGGERQRVLLARALAQA 157 (402)
T ss_pred EEccCCC--CCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCc-hhhcCChhhCCHHHHHHHHHHHHHHcC
Confidence 9999863 34455666665421 11 11234577889999986 677899999999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 414 PNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 414 p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
|++|||||||+|||+.++..+.++|+++
T Consensus 158 P~iLLLDEPtsgLD~~~~~~l~~lL~~l 185 (402)
T PRK09536 158 TPVLLLDEPTASLDINHQVRTLELVRRL 185 (402)
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999875
No 100
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=100.00 E-value=1.1e-34 Score=275.05 Aligned_cols=161 Identities=31% Similarity=0.466 Sum_probs=132.8
Q ss_pred EEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcC------------ceEEEE
Q psy208 277 LQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR------------NLKFGY 344 (443)
Q Consensus 277 l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~------------~~~ig~ 344 (443)
|+++||+++|+ ++++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+ ...++|
T Consensus 1 l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (222)
T cd03224 1 LEVENLNAGYG-KSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGY 79 (222)
T ss_pred CEEeeEEeecC-CeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEE
Confidence 57899999996 46799999999999999999999999999999999999999999998753 124899
Q ss_pred eccCcccccccchhHHHHHHHhC--CC--CCHHHHHHHHhcC-CCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEE
Q psy208 345 FSQHHVDQLDMNLRCVQLLEAAF--PG--KPQEEYRRQLGGF-GVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVL 419 (443)
Q Consensus 345 ~~Q~~~~~l~~~~~~~~~~~~~~--~~--~~~~~~~~~L~~~-gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiL 419 (443)
++|++. +....++.+++.... .. .....+..++..+ ++. +..++++.+||||||||++|||+++.+|++|||
T Consensus 80 ~~q~~~--~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~-~~~~~~~~~LS~G~~qrv~laral~~~p~llll 156 (222)
T cd03224 80 VPEGRR--IFPELTVEENLLLGAYARRRAKRKARLERVYELFPRLK-ERRKQLAGTLSGGEQQMLAIARALMSRPKLLLL 156 (222)
T ss_pred eccccc--cCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHHHhhh-hhhhCchhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999863 444556666654221 11 1123455667777 353 567889999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHccc
Q psy208 420 DEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 420 DEPTn~LD~~s~~~l~~~L~~~ 441 (443)
||||++||+.+++.+.+.|.++
T Consensus 157 DEPt~~LD~~~~~~l~~~l~~~ 178 (222)
T cd03224 157 DEPSEGLAPKIVEEIFEAIREL 178 (222)
T ss_pred CCCcccCCHHHHHHHHHHHHHH
Confidence 9999999999999999999765
No 101
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-34 Score=285.40 Aligned_cols=165 Identities=29% Similarity=0.382 Sum_probs=136.5
Q ss_pred eEEEeeeEEEeCCC----CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc------------
Q psy208 276 ILQLSEVNFEYVPG----KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN------------ 339 (443)
Q Consensus 276 ~l~~~~l~~~y~~~----~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------------ 339 (443)
||+++|++++|+++ +++|+|+||+|.+|++++|+|+||||||||+++|+|+++|++|+|.+++.
T Consensus 1 mi~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 80 (288)
T PRK13643 1 MIKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIK 80 (288)
T ss_pred CEEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHH
Confidence 58999999999632 25999999999999999999999999999999999999999999987541
Q ss_pred ---eEEEEeccCcccccccchhHHHHHHHhC--CCCC----HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHh
Q psy208 340 ---LKFGYFSQHHVDQLDMNLRCVQLLEAAF--PGKP----QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMC 410 (443)
Q Consensus 340 ---~~ig~~~Q~~~~~l~~~~~~~~~~~~~~--~~~~----~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al 410 (443)
..+||++|++...+.. .++.+++.... .+.. ...+.++++.+++.....++++..||||||||++||++|
T Consensus 81 ~~~~~ig~v~q~~~~~l~~-~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL 159 (288)
T PRK13643 81 PVRKKVGVVFQFPESQLFE-ETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGIL 159 (288)
T ss_pred HHHhhEEEEecCcchhccc-chHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHH
Confidence 2489999986323332 46666664211 1112 234677888999965567899999999999999999999
Q ss_pred ccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 411 MAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 411 ~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
+.+|++|||||||++||+.++..|.+.|.++
T Consensus 160 ~~~p~illLDEPt~gLD~~~~~~l~~~l~~l 190 (288)
T PRK13643 160 AMEPEVLVLDEPTAGLDPKARIEMMQLFESI 190 (288)
T ss_pred HhCCCEEEEECCccCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998765
No 102
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.5e-34 Score=278.09 Aligned_cols=163 Identities=29% Similarity=0.426 Sum_probs=135.9
Q ss_pred EEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-----------eEEEEe
Q psy208 277 LQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-----------LKFGYF 345 (443)
Q Consensus 277 l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~ig~~ 345 (443)
|+++||+++|++.+++|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+. ..++|+
T Consensus 1 l~~~~l~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (242)
T cd03295 1 IEFENVTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYV 80 (242)
T ss_pred CEEEEEEEEeCCcceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEEE
Confidence 468999999963257999999999999999999999999999999999999999999987531 358999
Q ss_pred ccCcccccccchhHHHHHHHh--CCCCC----HHHHHHHHhcCCCCh-hhhhccCCCCCHHHHHHHHHHHHhccCCCeEE
Q psy208 346 SQHHVDQLDMNLRCVQLLEAA--FPGKP----QEEYRRQLGGFGVSG-DLALQFVGSLSGGQKSRVAFARMCMAAPNFLV 418 (443)
Q Consensus 346 ~Q~~~~~l~~~~~~~~~~~~~--~~~~~----~~~~~~~L~~~gl~~-~~~~~~~~~LSgGekqRl~lA~al~~~p~lLi 418 (443)
+|++. +....++.+++... ..... ...+.+++..+++.. ...++++.+|||||||||+||++++.+|++||
T Consensus 81 ~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lll 158 (242)
T cd03295 81 IQQIG--LFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLL 158 (242)
T ss_pred ccCcc--ccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99863 44445666665321 11111 235678899999974 36789999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHccc
Q psy208 419 LDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 419 LDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
|||||++||+.+++.+.+.|.++
T Consensus 159 lDEPt~~LD~~~~~~l~~~L~~~ 181 (242)
T cd03295 159 MDEPFGALDPITRDQLQEEFKRL 181 (242)
T ss_pred ecCCcccCCHHHHHHHHHHHHHH
Confidence 99999999999999999998765
No 103
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=100.00 E-value=2e-34 Score=274.01 Aligned_cols=164 Identities=26% Similarity=0.383 Sum_probs=135.5
Q ss_pred eEEEeeeEEEeCC------CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEc--C---c-----
Q psy208 276 ILQLSEVNFEYVP------GKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVH--R---N----- 339 (443)
Q Consensus 276 ~l~~~~l~~~y~~------~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~--~---~----- 339 (443)
+|+++|++++|++ .+++|+|+||+|.+|++++|+|+||||||||+++|+|+++|++|+|.+. + +
T Consensus 1 ml~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~ 80 (224)
T TIGR02324 1 LLEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQAS 80 (224)
T ss_pred CEEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcC
Confidence 4789999999952 1469999999999999999999999999999999999999999999885 2 1
Q ss_pred ---------eEEEEeccCcccccccchhHHHHHHHh--CCCC----CHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHH
Q psy208 340 ---------LKFGYFSQHHVDQLDMNLRCVQLLEAA--FPGK----PQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRV 404 (443)
Q Consensus 340 ---------~~ig~~~Q~~~~~l~~~~~~~~~~~~~--~~~~----~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl 404 (443)
..++|++|++. +....++.+++... .... ..+.+..++..+++.....++++.+||||||||+
T Consensus 81 ~~~~~~~~~~~i~~~~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl 158 (224)
T TIGR02324 81 PREVLEVRRKTIGYVSQFLR--VIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRV 158 (224)
T ss_pred HHHHHHHHhcceEEEecccc--cCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHH
Confidence 25899999863 34445555554321 1111 1345677899999964455789999999999999
Q ss_pred HHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 405 AFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 405 ~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
+||++|+.+|++|||||||++||+.+++.+.+.|.++
T Consensus 159 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~ 195 (224)
T TIGR02324 159 NIARGFIADYPILLLDEPTASLDAANRQVVVELIAEA 195 (224)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999875
No 104
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.4e-34 Score=283.75 Aligned_cols=165 Identities=30% Similarity=0.399 Sum_probs=136.8
Q ss_pred eEEEeeeEEEeCCC----CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc------------
Q psy208 276 ILQLSEVNFEYVPG----KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN------------ 339 (443)
Q Consensus 276 ~l~~~~l~~~y~~~----~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------------ 339 (443)
+|+++|++++|++. +++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+.
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 58899999999632 46999999999999999999999999999999999999999999987542
Q ss_pred ---eEEEEeccCcccccccchhHHHHHHH--hCCCCC----HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHh
Q psy208 340 ---LKFGYFSQHHVDQLDMNLRCVQLLEA--AFPGKP----QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMC 410 (443)
Q Consensus 340 ---~~ig~~~Q~~~~~l~~~~~~~~~~~~--~~~~~~----~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al 410 (443)
..++|++|++...+. ..++.+++.. ...... ...+.+++..+|+.....++++.+||||||||++||++|
T Consensus 82 ~~~~~ig~v~q~~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral 160 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLF-ENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVM 160 (287)
T ss_pred HHHhceEEEEeChhhhhc-cchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHH
Confidence 248999998632232 3466666542 111111 234678899999964567899999999999999999999
Q ss_pred ccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 411 MAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 411 ~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
+.+|++|||||||++||+.++..+.+.|.++
T Consensus 161 ~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l 191 (287)
T PRK13641 161 AYEPEILCLDEPAAGLDPEGRKEMMQLFKDY 191 (287)
T ss_pred HcCCCEEEEECCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999875
No 105
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.2e-34 Score=286.66 Aligned_cols=169 Identities=24% Similarity=0.245 Sum_probs=139.2
Q ss_pred CCCCeEEEeeeEEEeCCC----CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcC---------
Q psy208 272 LSPPILQLSEVNFEYVPG----KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR--------- 338 (443)
Q Consensus 272 ~~~~~l~~~~l~~~y~~~----~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~--------- 338 (443)
.+.++|+++|++++|++. .++|+|+||+|.+|+++||+|+||||||||+++|+|+++|++|+|.+.+
T Consensus 17 ~~~~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~ 96 (320)
T PRK13631 17 SDDIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNN 96 (320)
T ss_pred CCCceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEccccccc
Confidence 355789999999999632 3699999999999999999999999999999999999999999998752
Q ss_pred ------------------ceEEEEeccCcccccccchhHHHHHHHh--CCCCC----HHHHHHHHhcCCCChhhhhccCC
Q psy208 339 ------------------NLKFGYFSQHHVDQLDMNLRCVQLLEAA--FPGKP----QEEYRRQLGGFGVSGDLALQFVG 394 (443)
Q Consensus 339 ------------------~~~ig~~~Q~~~~~l~~~~~~~~~~~~~--~~~~~----~~~~~~~L~~~gl~~~~~~~~~~ 394 (443)
...+||++|++...+.. .++.+++... ..... ...+..++..+|+.....++++.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~ 175 (320)
T PRK13631 97 HELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFK-DTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPF 175 (320)
T ss_pred ccccccccccccchHHHHHhcEEEEEECchhcccc-chHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCcc
Confidence 12489999986323332 3666665321 11112 23466788999996456789999
Q ss_pred CCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 395 SLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 395 ~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
+|||||||||+|||+|+.+|++|||||||++||+.++..+.+.|.++
T Consensus 176 ~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l 222 (320)
T PRK13631 176 GLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDA 222 (320)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998764
No 106
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-34 Score=289.04 Aligned_cols=168 Identities=24% Similarity=0.348 Sum_probs=141.3
Q ss_pred CCeEEEeeeEEEeCC---------CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-----
Q psy208 274 PPILQLSEVNFEYVP---------GKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN----- 339 (443)
Q Consensus 274 ~~~l~~~~l~~~y~~---------~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~----- 339 (443)
.++|+++||++.|+. ...+|+||||+|.+|+++||+|+||||||||+++|+|+++|++|+|.+.+.
T Consensus 3 ~~~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~ 82 (327)
T PRK11308 3 QPLLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKA 82 (327)
T ss_pred CceEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcC
Confidence 358999999999952 246999999999999999999999999999999999999999999987541
Q ss_pred ---------eEEEEeccCcccccccchhHHHHHHH---hCCCC----CHHHHHHHHhcCCCChhhhhccCCCCCHHHHHH
Q psy208 340 ---------LKFGYFSQHHVDQLDMNLRCVQLLEA---AFPGK----PQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSR 403 (443)
Q Consensus 340 ---------~~ig~~~Q~~~~~l~~~~~~~~~~~~---~~~~~----~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqR 403 (443)
..++|++|++...+++..++.+.+.. ..... ....+.++|..+|+.....++++++|||||+||
T Consensus 83 ~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QR 162 (327)
T PRK11308 83 DPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQR 162 (327)
T ss_pred CHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHH
Confidence 25999999975556666666555432 11111 124578899999997567789999999999999
Q ss_pred HHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 404 VAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 404 l~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
|+||+||+.+|++||+||||++||+.++..+.+.|.++
T Consensus 163 v~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l 200 (327)
T PRK11308 163 IAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDL 200 (327)
T ss_pred HHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998764
No 107
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=100.00 E-value=1.4e-34 Score=279.56 Aligned_cols=162 Identities=28% Similarity=0.429 Sum_probs=135.5
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcC-----------------
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR----------------- 338 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~----------------- 338 (443)
+|+++||+++|+ ++++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++
T Consensus 3 ~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 81 (250)
T PRK11264 3 AIEVKNLVKKFH-GQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIR 81 (250)
T ss_pred cEEEeceEEEEC-CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHH
Confidence 699999999996 46799999999999999999999999999999999999999999997642
Q ss_pred --ceEEEEeccCcccccccchhHHHHHHH---hCCCCC----HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHH
Q psy208 339 --NLKFGYFSQHHVDQLDMNLRCVQLLEA---AFPGKP----QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARM 409 (443)
Q Consensus 339 --~~~ig~~~Q~~~~~l~~~~~~~~~~~~---~~~~~~----~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~a 409 (443)
...++|++|++. +.+..++.+++.. ...... ...+..++..+|+. ...++++.+|||||||||+||++
T Consensus 82 ~~~~~i~~v~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LS~Gq~qrv~la~a 158 (250)
T PRK11264 82 QLRQHVGFVFQNFN--LFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLA-GKETSYPRRLSGGQQQRVAIARA 158 (250)
T ss_pred HhhhhEEEEecCcc--cCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc-chhhCChhhCChHHHHHHHHHHH
Confidence 125899999853 3444566666532 111111 23467788999986 45688999999999999999999
Q ss_pred hccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 410 CMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 410 l~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
++.+|++|||||||++||+.+++.+.+.|.++
T Consensus 159 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~ 190 (250)
T PRK11264 159 LAMRPEVILFDEPTSALDPELVGEVLNTIRQL 190 (250)
T ss_pred HhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998765
No 108
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.6e-34 Score=285.51 Aligned_cols=165 Identities=24% Similarity=0.302 Sum_probs=137.2
Q ss_pred eEEEeeeEEEeCCC----CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcC-------------
Q psy208 276 ILQLSEVNFEYVPG----KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR------------- 338 (443)
Q Consensus 276 ~l~~~~l~~~y~~~----~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~------------- 338 (443)
+|+++||+++|++. .++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKE 81 (305)
T ss_pred EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceeccccccccccc
Confidence 48999999999643 2599999999999999999999999999999999999999999998742
Q ss_pred ----------------------ceEEEEeccCcccccccchhHHHHHHHh--CCCCC----HHHHHHHHhcCCCChhhhh
Q psy208 339 ----------------------NLKFGYFSQHHVDQLDMNLRCVQLLEAA--FPGKP----QEEYRRQLGGFGVSGDLAL 390 (443)
Q Consensus 339 ----------------------~~~ig~~~Q~~~~~l~~~~~~~~~~~~~--~~~~~----~~~~~~~L~~~gl~~~~~~ 390 (443)
...+||++|++...+. ..++.+++... ..+.. ...+.++++.+|+..+..+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~-~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~ 160 (305)
T PRK13651 82 KVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLF-EQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQ 160 (305)
T ss_pred ccccccccccccccccchHHHHHhceEEEeeCcccccc-cccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhh
Confidence 1248999998633333 34666666421 11122 3456788999999656788
Q ss_pred ccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 391 QFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 391 ~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
+++.+|||||||||+||++|+.+|++|||||||++||+.++..+.+.|.++
T Consensus 161 ~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l 211 (305)
T PRK13651 161 RSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNL 211 (305)
T ss_pred CChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998764
No 109
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.1e-34 Score=284.59 Aligned_cols=165 Identities=29% Similarity=0.364 Sum_probs=137.1
Q ss_pred eEEEeeeEEEeCCC----CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc------------
Q psy208 276 ILQLSEVNFEYVPG----KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN------------ 339 (443)
Q Consensus 276 ~l~~~~l~~~y~~~----~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------------ 339 (443)
.|+++||+++|++. .++|+|+||+|.+|++++|+|+||||||||+|+|+|+++|++|+|.+.+.
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (290)
T PRK13634 2 DITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLK 81 (290)
T ss_pred EEEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 38999999999642 46999999999999999999999999999999999999999999987542
Q ss_pred ---eEEEEeccCcccccccchhHHHHHHHh--CCCCC----HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHh
Q psy208 340 ---LKFGYFSQHHVDQLDMNLRCVQLLEAA--FPGKP----QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMC 410 (443)
Q Consensus 340 ---~~ig~~~Q~~~~~l~~~~~~~~~~~~~--~~~~~----~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al 410 (443)
..+||++|++...+. ..++.+++... ..... ...+..+++.+++.....++++..|||||||||+||++|
T Consensus 82 ~~~~~ig~v~q~~~~~l~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL 160 (290)
T PRK13634 82 PLRKKVGIVFQFPEHQLF-EETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVL 160 (290)
T ss_pred HHHhhEEEEeeCchhhhh-hhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHH
Confidence 258999998632333 34666665421 11112 234677889999965567899999999999999999999
Q ss_pred ccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 411 MAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 411 ~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
+.+|++|||||||++||+.++..+.+.|.++
T Consensus 161 ~~~P~llllDEPt~~LD~~~~~~l~~~L~~l 191 (290)
T PRK13634 161 AMEPEVLVLDEPTAGLDPKGRKEMMEMFYKL 191 (290)
T ss_pred HcCCCEEEEECCcccCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999765
No 110
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=100.00 E-value=2.1e-34 Score=289.17 Aligned_cols=168 Identities=18% Similarity=0.365 Sum_probs=141.4
Q ss_pred CCeEEEeeeEEEeCC------------CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc--
Q psy208 274 PPILQLSEVNFEYVP------------GKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-- 339 (443)
Q Consensus 274 ~~~l~~~~l~~~y~~------------~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-- 339 (443)
+++|+++||+++|+. ...+++|+||+|.+|++++|+|+||||||||+++|+|+++|++|+|.+.+.
T Consensus 6 ~~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i 85 (331)
T PRK15079 6 KVLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDL 85 (331)
T ss_pred CceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEEC
Confidence 468999999999952 146999999999999999999999999999999999999999999987531
Q ss_pred ------------eEEEEeccCcccccccchhHHHHHHHh---C-CCCC----HHHHHHHHhcCCCChhhhhccCCCCCHH
Q psy208 340 ------------LKFGYFSQHHVDQLDMNLRCVQLLEAA---F-PGKP----QEEYRRQLGGFGVSGDLALQFVGSLSGG 399 (443)
Q Consensus 340 ------------~~ig~~~Q~~~~~l~~~~~~~~~~~~~---~-~~~~----~~~~~~~L~~~gl~~~~~~~~~~~LSgG 399 (443)
..++|++|++...+++..++.+++... + .... .+.+.+++..+++..+..++++++||||
T Consensus 86 ~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG 165 (331)
T PRK15079 86 LGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGG 165 (331)
T ss_pred CcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHH
Confidence 259999999743466666777665421 1 1122 2346678999999666789999999999
Q ss_pred HHHHHHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 400 QKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 400 ekqRl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
|+|||+||+||+.+|++|||||||++||+.++..+.+.|.++
T Consensus 166 ~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l 207 (331)
T PRK15079 166 QCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQL 207 (331)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998764
No 111
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2e-34 Score=284.31 Aligned_cols=165 Identities=27% Similarity=0.375 Sum_probs=136.5
Q ss_pred eEEEeeeEEEeCCC----CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcC-------------
Q psy208 276 ILQLSEVNFEYVPG----KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR------------- 338 (443)
Q Consensus 276 ~l~~~~l~~~y~~~----~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~------------- 338 (443)
.|+++||++.|++. +++|+|+||+|.+|+++||+||||||||||+++|+|+++|++|+|.+.+
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13637 2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDI 81 (287)
T ss_pred EEEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHH
Confidence 38999999999642 4699999999999999999999999999999999999999999998753
Q ss_pred ceEEEEeccCcccccccchhHHHHHHHh--CCCCC----HHHHHHHHhcCCCCh-hhhhccCCCCCHHHHHHHHHHHHhc
Q psy208 339 NLKFGYFSQHHVDQLDMNLRCVQLLEAA--FPGKP----QEEYRRQLGGFGVSG-DLALQFVGSLSGGQKSRVAFARMCM 411 (443)
Q Consensus 339 ~~~ig~~~Q~~~~~l~~~~~~~~~~~~~--~~~~~----~~~~~~~L~~~gl~~-~~~~~~~~~LSgGekqRl~lA~al~ 411 (443)
...+||++|++...+. ..++.+++... ..+.. ...+..+++.+|+.. +..++++..||||||||++||+||+
T Consensus 82 ~~~ig~v~q~~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~ 160 (287)
T PRK13637 82 RKKVGLVFQYPEYQLF-EETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVA 160 (287)
T ss_pred hhceEEEecCchhccc-cccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHH
Confidence 1258999998632222 34666665421 11122 234678899999962 4678999999999999999999999
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 412 AAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 412 ~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
.+|++|||||||++||+.++..+.+.|.++
T Consensus 161 ~~P~llllDEPt~gLD~~~~~~l~~~l~~l 190 (287)
T PRK13637 161 MEPKILILDEPTAGLDPKGRDEILNKIKEL 190 (287)
T ss_pred cCCCEEEEECCccCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999765
No 112
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-34 Score=293.99 Aligned_cols=162 Identities=25% Similarity=0.347 Sum_probs=138.4
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc---------eEEEEec
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN---------LKFGYFS 346 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~---------~~ig~~~ 346 (443)
.|+++|++++|+ ++.+|+|+||+|.+|++++|+||||||||||||+|+|+++|++|+|.+++. ..+||++
T Consensus 3 ~l~i~~l~~~~~-~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~v~ 81 (369)
T PRK11000 3 SVTLRNVTKAYG-DVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMVF 81 (369)
T ss_pred EEEEEEEEEEeC-CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEEEe
Confidence 589999999996 567999999999999999999999999999999999999999999987542 2599999
Q ss_pred cCcccccccchhHHHHHHHhC--CCCC----HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEe
Q psy208 347 QHHVDQLDMNLRCVQLLEAAF--PGKP----QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLD 420 (443)
Q Consensus 347 Q~~~~~l~~~~~~~~~~~~~~--~~~~----~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLD 420 (443)
|++. +.+..++.+++.... .... .+.+.++++.+++. +..++++.+|||||||||+|||||+.+|++||||
T Consensus 82 Q~~~--l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLD 158 (369)
T PRK11000 82 QSYA--LYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLA-HLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLD 158 (369)
T ss_pred CCcc--cCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCCh-hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 9863 455567777764321 1111 24567889999996 5678999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHccc
Q psy208 421 EPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 421 EPTn~LD~~s~~~l~~~L~~~ 441 (443)
|||++||+.+++.+.+.|.++
T Consensus 159 EPts~LD~~~~~~l~~~L~~l 179 (369)
T PRK11000 159 EPLSNLDAALRVQMRIEISRL 179 (369)
T ss_pred CCcccCCHHHHHHHHHHHHHH
Confidence 999999999999999988765
No 113
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.3e-34 Score=276.78 Aligned_cols=162 Identities=30% Similarity=0.386 Sum_probs=136.2
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc----------------
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN---------------- 339 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~---------------- 339 (443)
+|+++|+++.|+ ++++|+|+||+|.+|++++|+||||||||||+|+|+|+++|++|+|.+.+.
T Consensus 2 ~l~~~~l~~~~~-~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (242)
T PRK11124 2 SIQLNGINCFYG-AHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIREL 80 (242)
T ss_pred EEEEEeeEEEEC-CeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHH
Confidence 588999999996 468999999999999999999999999999999999999999999987532
Q ss_pred -eEEEEeccCcccccccchhHHHHHHH---hCCCCC----HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhc
Q psy208 340 -LKFGYFSQHHVDQLDMNLRCVQLLEA---AFPGKP----QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCM 411 (443)
Q Consensus 340 -~~ig~~~Q~~~~~l~~~~~~~~~~~~---~~~~~~----~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~ 411 (443)
..++|++|++. +....++.+++.. ...... ...+..++..+|+. ...++++..||||||||++|||+++
T Consensus 81 ~~~i~~~~q~~~--~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LS~G~~qrv~laral~ 157 (242)
T PRK11124 81 RRNVGMVFQQYN--LWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLK-PYADRFPLHLSGGQQQRVAIARALM 157 (242)
T ss_pred HhheEEEecCcc--ccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh-hhhhCChhhCCHHHHHHHHHHHHHh
Confidence 24899999863 4444566666532 111111 23467788999986 5678999999999999999999999
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 412 AAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 412 ~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
.+|++|||||||++||+.+++.+.+.|.++
T Consensus 158 ~~p~llilDEPt~~LD~~~~~~l~~~l~~~ 187 (242)
T PRK11124 158 MEPQVLLFDEPTAALDPEITAQIVSIIREL 187 (242)
T ss_pred cCCCEEEEcCCCCcCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999998765
No 114
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=100.00 E-value=2.3e-34 Score=279.38 Aligned_cols=164 Identities=26% Similarity=0.394 Sum_probs=137.3
Q ss_pred CeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc---------------
Q psy208 275 PILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN--------------- 339 (443)
Q Consensus 275 ~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~--------------- 339 (443)
..|+++||++.|+ ++++|+|+||+|.+|++++|+|+||||||||+++|+|+++|++|+|.+.+.
T Consensus 4 ~~l~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 82 (257)
T PRK10619 4 NKLNVIDLHKRYG-EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVA 82 (257)
T ss_pred ccEEEeeeEEEEC-CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccccc
Confidence 4689999999996 568999999999999999999999999999999999999999999977541
Q ss_pred ---------eEEEEeccCcccccccchhHHHHHHH---hCCCC----CHHHHHHHHhcCCCChhhhhccCCCCCHHHHHH
Q psy208 340 ---------LKFGYFSQHHVDQLDMNLRCVQLLEA---AFPGK----PQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSR 403 (443)
Q Consensus 340 ---------~~ig~~~Q~~~~~l~~~~~~~~~~~~---~~~~~----~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqR 403 (443)
..++|++|++. +....++.+++.. ..... ....+.+++..+|+.....++++..||||||||
T Consensus 83 ~~~~~~~~~~~i~~v~q~~~--l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qr 160 (257)
T PRK10619 83 DKNQLRLLRTRLTMVFQHFN--LWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQR 160 (257)
T ss_pred cchHHHHHhhceEEEecCcc--cCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHH
Confidence 24899999863 3444566666532 11111 134567889999996444478899999999999
Q ss_pred HHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 404 VAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 404 l~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
++|||+|+.+|++|||||||++||+.+++.+.+.|.++
T Consensus 161 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l 198 (257)
T PRK10619 161 VSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQL 198 (257)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998765
No 115
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.5e-34 Score=278.50 Aligned_cols=163 Identities=27% Similarity=0.385 Sum_probs=136.5
Q ss_pred CeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc------------eEE
Q psy208 275 PILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN------------LKF 342 (443)
Q Consensus 275 ~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------------~~i 342 (443)
++|+++|+++.|+ ++++|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+. ..+
T Consensus 4 ~~l~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 82 (255)
T PRK11300 4 PLLSVSGLMMRFG-GLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGV 82 (255)
T ss_pred ceEEEeeEEEEEC-CEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCe
Confidence 5799999999996 568999999999999999999999999999999999999999999987542 247
Q ss_pred EEeccCcccccccchhHHHHHHHhC------------------CCC---CHHHHHHHHhcCCCChhhhhccCCCCCHHHH
Q psy208 343 GYFSQHHVDQLDMNLRCVQLLEAAF------------------PGK---PQEEYRRQLGGFGVSGDLALQFVGSLSGGQK 401 (443)
Q Consensus 343 g~~~Q~~~~~l~~~~~~~~~~~~~~------------------~~~---~~~~~~~~L~~~gl~~~~~~~~~~~LSgGek 401 (443)
+|++|++. +....++.+++.... ... ....+..++..+|+. +..++++.+||||||
T Consensus 83 ~~~~q~~~--~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LS~G~~ 159 (255)
T PRK11300 83 VRTFQHVR--LFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLL-EHANRQAGNLAYGQQ 159 (255)
T ss_pred EEeccCcc--cCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChh-hhhhCChhhCCHHHH
Confidence 88999863 444556666554210 000 113466778899985 567899999999999
Q ss_pred HHHHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 402 SRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 402 qRl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
||++||++++.+|++|||||||++||+.++..+.+.|.++
T Consensus 160 qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~ 199 (255)
T PRK11300 160 RRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAEL 199 (255)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999765
No 116
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=2.8e-34 Score=290.49 Aligned_cols=163 Identities=31% Similarity=0.465 Sum_probs=141.1
Q ss_pred CeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc---------eEEEEe
Q psy208 275 PILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN---------LKFGYF 345 (443)
Q Consensus 275 ~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~---------~~ig~~ 345 (443)
++|+++||+++|+ ++.+|+|+||+|.+|++++|+|||||||||||++|+|+++|++|+|.+++. ..+||+
T Consensus 3 ~~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~v 81 (353)
T TIGR03265 3 PYLSIDNIRKRFG-AFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGIV 81 (353)
T ss_pred cEEEEEEEEEEeC-CeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEE
Confidence 4699999999996 567999999999999999999999999999999999999999999988642 359999
Q ss_pred ccCcccccccchhHHHHHHHhC--CCC----CHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEE
Q psy208 346 SQHHVDQLDMNLRCVQLLEAAF--PGK----PQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVL 419 (443)
Q Consensus 346 ~Q~~~~~l~~~~~~~~~~~~~~--~~~----~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiL 419 (443)
+|++ .+.+..++.+++.... ... ....+.++++.+++. ...++++.+|||||||||+|||||+.+|++|||
T Consensus 82 ~Q~~--~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~-~~~~~~~~~LSgGq~QRvaLARaL~~~P~llLL 158 (353)
T TIGR03265 82 FQSY--ALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLP-GSERKYPGQLSGGQQQRVALARALATSPGLLLL 158 (353)
T ss_pred eCCc--ccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCC-chhhCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9985 3556678887775321 111 134678899999996 578899999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHccc
Q psy208 420 DEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 420 DEPTn~LD~~s~~~l~~~L~~~ 441 (443)
||||++||+.+++.+.+.|+++
T Consensus 159 DEP~s~LD~~~r~~l~~~L~~l 180 (353)
T TIGR03265 159 DEPLSALDARVREHLRTEIRQL 180 (353)
T ss_pred cCCcccCCHHHHHHHHHHHHHH
Confidence 9999999999999999998764
No 117
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.7e-34 Score=280.17 Aligned_cols=165 Identities=26% Similarity=0.389 Sum_probs=138.2
Q ss_pred CCCeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-----------eE
Q psy208 273 SPPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-----------LK 341 (443)
Q Consensus 273 ~~~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~ 341 (443)
..++|+++|++++|+ ++++|+|+||+|.+|++++|+|+||||||||+++|+|+++|++|+|.+.+. ..
T Consensus 8 ~~~~l~i~~l~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 86 (265)
T PRK10575 8 SDTTFALRNVSFRVP-GRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARK 86 (265)
T ss_pred CCceEEEeeEEEEEC-CEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhh
Confidence 356899999999996 568999999999999999999999999999999999999999999988642 24
Q ss_pred EEEeccCcccccccchhHHHHHHHhCC----------CCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhc
Q psy208 342 FGYFSQHHVDQLDMNLRCVQLLEAAFP----------GKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCM 411 (443)
Q Consensus 342 ig~~~Q~~~~~l~~~~~~~~~~~~~~~----------~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~ 411 (443)
++|++|++. +....++.+++..... ......+..++..+++. +..++++.+|||||||||+||++++
T Consensus 87 i~~v~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~laral~ 163 (265)
T PRK10575 87 VAYLPQQLP--AAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLK-PLAHRLVDSLSGGERQRAWIAMLVA 163 (265)
T ss_pred eEEeccCCC--CCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCH-HHhcCCcccCCHHHHHHHHHHHHHh
Confidence 899999853 3344566666542110 01123567889999985 5678899999999999999999999
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 412 AAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 412 ~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
.+|++|||||||++||+.+++.+.+.|.++
T Consensus 164 ~~p~lllLDEPt~~LD~~~~~~~~~~l~~l 193 (265)
T PRK10575 164 QDSRCLLLDEPTSALDIAHQVDVLALVHRL 193 (265)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999988765
No 118
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.1e-34 Score=275.68 Aligned_cols=162 Identities=27% Similarity=0.428 Sum_probs=136.0
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcC------------ceEEE
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR------------NLKFG 343 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~------------~~~ig 343 (443)
+|+++|++++|+ ++++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+ ...++
T Consensus 3 ~l~~~~l~~~~~-~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 81 (241)
T PRK10895 3 TLTAKNLAKAYK-GRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIG 81 (241)
T ss_pred eEEEeCcEEEeC-CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeE
Confidence 689999999996 56899999999999999999999999999999999999999999998754 13589
Q ss_pred EeccCcccccccchhHHHHHHHhC---CCC----CHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCe
Q psy208 344 YFSQHHVDQLDMNLRCVQLLEAAF---PGK----PQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNF 416 (443)
Q Consensus 344 ~~~Q~~~~~l~~~~~~~~~~~~~~---~~~----~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~l 416 (443)
|++|++. +....++.+++.... ... ....+.+++..+++. +..++++..|||||+|||+||++++.+|++
T Consensus 82 ~~~q~~~--~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~laral~~~p~l 158 (241)
T PRK10895 82 YLPQEAS--IFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIE-HLRDSMGQSLSGGERRRVEIARALAANPKF 158 (241)
T ss_pred EeccCCc--ccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCH-HHhhcchhhCCHHHHHHHHHHHHHhcCCCE
Confidence 9999853 344456666654211 111 123567789999986 467889999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 417 LVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 417 LiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
|||||||++||+.+++.+.+.|.++
T Consensus 159 lllDEPt~~LD~~~~~~l~~~l~~~ 183 (241)
T PRK10895 159 ILLDEPFAGVDPISVIDIKRIIEHL 183 (241)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHH
Confidence 9999999999999999999888754
No 119
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=2.2e-34 Score=276.59 Aligned_cols=162 Identities=27% Similarity=0.405 Sum_probs=135.6
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-------------eEE
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-------------LKF 342 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-------------~~i 342 (443)
+|+++|++++|+ ++++|+|+||+|.+|++++|+|+||||||||+++|+|+++|++|+|.+.+. ..+
T Consensus 1 ~l~~~~l~~~~~-~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 79 (240)
T PRK09493 1 MIEFKNVSKHFG-PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEA 79 (240)
T ss_pred CEEEEeEEEEEC-CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhce
Confidence 478999999996 467999999999999999999999999999999999999999999987531 258
Q ss_pred EEeccCcccccccchhHHHHHHHh---CCCC----CHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCC
Q psy208 343 GYFSQHHVDQLDMNLRCVQLLEAA---FPGK----PQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPN 415 (443)
Q Consensus 343 g~~~Q~~~~~l~~~~~~~~~~~~~---~~~~----~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~ 415 (443)
+|++|++. +.+..++.+++... .... ....+.+++..+|+. ...++++..||||||||++||++++.+|+
T Consensus 80 ~~~~q~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LS~G~~qrv~la~al~~~p~ 156 (240)
T PRK09493 80 GMVFQQFY--LFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLA-ERAHHYPSELSGGQQQRVAIARALAVKPK 156 (240)
T ss_pred EEEecccc--cCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCh-HHHhcChhhcCHHHHHHHHHHHHHhcCCC
Confidence 99999853 34445666655321 1111 123467789999996 56789999999999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 416 FLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 416 lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
+|||||||++||+.+++.+.+.|.++
T Consensus 157 llllDEP~~~LD~~~~~~l~~~l~~~ 182 (240)
T PRK09493 157 LMLFDEPTSALDPELRHEVLKVMQDL 182 (240)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999765
No 120
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.6e-34 Score=283.39 Aligned_cols=165 Identities=26% Similarity=0.341 Sum_probs=136.6
Q ss_pred eEEEeeeEEEeCCC----CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc------------
Q psy208 276 ILQLSEVNFEYVPG----KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN------------ 339 (443)
Q Consensus 276 ~l~~~~l~~~y~~~----~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------------ 339 (443)
.|+++||+++|+++ +++|+|+||+|.+|++++|+|+||||||||+++|+|+++|++|+|.+.+.
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIR 81 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 38999999999632 36999999999999999999999999999999999999999999987541
Q ss_pred ---eEEEEeccCcccccccchhHHHHHHHh--CCCCC----HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHh
Q psy208 340 ---LKFGYFSQHHVDQLDMNLRCVQLLEAA--FPGKP----QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMC 410 (443)
Q Consensus 340 ---~~ig~~~Q~~~~~l~~~~~~~~~~~~~--~~~~~----~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al 410 (443)
..+||++|++...+.. .++.+++... ..... ...+.+++..+|+..+..++++.+||||||||++||++|
T Consensus 82 ~~~~~ig~v~q~~~~~l~~-~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL 160 (286)
T PRK13646 82 PVRKRIGMVFQFPESQLFE-DTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSIL 160 (286)
T ss_pred HHHhheEEEecChHhccch-hhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHH
Confidence 2589999986323332 3666666421 11112 245678899999964567889999999999999999999
Q ss_pred ccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 411 MAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 411 ~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
+.+|++|||||||++||+.++..+.+.|.++
T Consensus 161 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~l 191 (286)
T PRK13646 161 AMNPDIIVLDEPTAGLDPQSKRQVMRLLKSL 191 (286)
T ss_pred HhCCCEEEEECCcccCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999765
No 121
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-34 Score=282.07 Aligned_cols=163 Identities=26% Similarity=0.336 Sum_probs=132.9
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-------------eEE
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-------------LKF 342 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-------------~~i 342 (443)
||+++||+++|+ ++++|+++||+|.+|++++|+||||||||||+|+|+|+++|++|+|.+.+. ..+
T Consensus 1 ml~~~~l~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i 79 (271)
T PRK13638 1 MLATSDLWFRYQ-DEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQV 79 (271)
T ss_pred CeEEEEEEEEcC-CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhhe
Confidence 588999999996 567999999999999999999999999999999999999999999987531 248
Q ss_pred EEeccCcccccccchhHHHHHHH--hCCCCC----HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCe
Q psy208 343 GYFSQHHVDQLDMNLRCVQLLEA--AFPGKP----QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNF 416 (443)
Q Consensus 343 g~~~Q~~~~~l~~~~~~~~~~~~--~~~~~~----~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~l 416 (443)
+|++|++...+. ..++.+++.. ...... ...+..++..+|+. +..++++.+||||||||++||++|+.+|++
T Consensus 80 ~~v~q~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrl~laraL~~~p~l 157 (271)
T PRK13638 80 ATVFQDPEQQIF-YTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQ-HFRHQPIQCLSHGQKKRVAIAGALVLQARY 157 (271)
T ss_pred EEEeeChhhccc-cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH-hHhcCCchhCCHHHHHHHHHHHHHHcCCCE
Confidence 999998632222 2233333321 111111 23456788889985 467889999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 417 LVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 417 LiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
|||||||++||+.++..+.+.|.++
T Consensus 158 llLDEPt~~LD~~~~~~l~~~l~~~ 182 (271)
T PRK13638 158 LLLDEPTAGLDPAGRTQMIAIIRRI 182 (271)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999875
No 122
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.1e-34 Score=280.87 Aligned_cols=165 Identities=22% Similarity=0.341 Sum_probs=133.9
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc--------eEEEEecc
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN--------LKFGYFSQ 347 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~--------~~ig~~~Q 347 (443)
+|+++||+++|++++++|+|+||+|.+|++++|+||||||||||+|+|+|+++|++|+|.+.+. ..++|++|
T Consensus 6 ~l~~~~l~~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~i~~v~q 85 (272)
T PRK15056 6 GIVVNDVTVTWRNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAYVPQ 85 (272)
T ss_pred eEEEEeEEEEecCCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHHhhccceEEEecc
Confidence 6899999999964568999999999999999999999999999999999999999999987642 25999999
Q ss_pred CcccccccchhHHHHHHH-------hC--CC-CCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeE
Q psy208 348 HHVDQLDMNLRCVQLLEA-------AF--PG-KPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFL 417 (443)
Q Consensus 348 ~~~~~l~~~~~~~~~~~~-------~~--~~-~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lL 417 (443)
++........+..+.+.. .+ +. .....+..++..+|+. +..++++.+||||||||++||++|+.+|++|
T Consensus 86 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgG~~qrv~laraL~~~p~ll 164 (272)
T PRK15056 86 SEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMV-EFRHRQIGELSGGQKKRVFLARAIAQQGQVI 164 (272)
T ss_pred ccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCCh-hHhcCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 863211112222232210 00 00 1123466788999986 4678999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHccc
Q psy208 418 VLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 418 iLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
||||||++||+.+++.+.+.|.++
T Consensus 165 llDEPt~~LD~~~~~~l~~~L~~~ 188 (272)
T PRK15056 165 LLDEPFTGVDVKTEARIISLLREL 188 (272)
T ss_pred EEeCCCccCCHHHHHHHHHHHHHH
Confidence 999999999999999999999875
No 123
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=4.2e-34 Score=277.79 Aligned_cols=162 Identities=27% Similarity=0.431 Sum_probs=136.6
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-----------eEEEE
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-----------LKFGY 344 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~ig~ 344 (443)
+|+++|+++.|+ ++++|+|+||+|.+|++++|+|+||||||||+++|+|+++|++|+|.+.+. ..++|
T Consensus 2 ~l~~~~l~~~~~-~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (258)
T PRK13548 2 MLEARNLSVRLG-GRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAV 80 (258)
T ss_pred eEEEEeEEEEeC-CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEE
Confidence 689999999996 467999999999999999999999999999999999999999999987542 24899
Q ss_pred eccCcccccccchhHHHHHHHhCC--CC----CHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhc------c
Q psy208 345 FSQHHVDQLDMNLRCVQLLEAAFP--GK----PQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCM------A 412 (443)
Q Consensus 345 ~~Q~~~~~l~~~~~~~~~~~~~~~--~~----~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~------~ 412 (443)
++|++. +....++.+++..... .. ....+..++..+++. ...++++.+|||||||||+||++|+ .
T Consensus 81 ~~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~ 157 (258)
T PRK13548 81 LPQHSS--LSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLA-HLAGRDYPQLSGGEQQRVQLARVLAQLWEPDG 157 (258)
T ss_pred EccCCc--CCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCH-hHhcCCcccCCHHHHHHHHHHHHHhcccccCC
Confidence 999853 3344577776643211 11 123567789999986 5678999999999999999999999 5
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 413 APNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 413 ~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
+|++|||||||++||+.+++.+.+.|.++
T Consensus 158 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~ 186 (258)
T PRK13548 158 PPRWLLLDEPTSALDLAHQHHVLRLARQL 186 (258)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999865
No 124
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=5.3e-32 Score=317.24 Aligned_cols=162 Identities=23% Similarity=0.240 Sum_probs=135.7
Q ss_pred eEEEeeeEEEeCCC-CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcC-----------ceEEE
Q psy208 276 ILQLSEVNFEYVPG-KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR-----------NLKFG 343 (443)
Q Consensus 276 ~l~~~~l~~~y~~~-~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~ig 343 (443)
.|+++||+++|+++ .++|+|+||+|++|+++||+|++|||||||+++|.|+++|++|+|.+++ +.+++
T Consensus 1284 ~I~f~nVsf~Y~~~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~ 1363 (1522)
T TIGR00957 1284 RVEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKIT 1363 (1522)
T ss_pred cEEEEEEEEEeCCCCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcCe
Confidence 59999999999654 4799999999999999999999999999999999999999999999875 24699
Q ss_pred EeccCcccccccchhHHHHHHHhCCCCCHHHHHHHHhcCCCChh------hhhc----cCCCCCHHHHHHHHHHHHhccC
Q psy208 344 YFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGD------LALQ----FVGSLSGGQKSRVAFARMCMAA 413 (443)
Q Consensus 344 ~~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~------~~~~----~~~~LSgGekqRl~lA~al~~~ 413 (443)
|+||++. +. ..|+.+++.. +...+++++.+.++..++... -.+. ...+||||||||++||||++++
T Consensus 1364 iVpQdp~--LF-~gTIr~NLdp-~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~ 1439 (1522)
T TIGR00957 1364 IIPQDPV--LF-SGSLRMNLDP-FSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRK 1439 (1522)
T ss_pred EECCCCc--cc-CccHHHHcCc-ccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcC
Confidence 9999974 22 3477777742 234567788888887776321 1222 3357999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 414 PNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 414 p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
|+||||||||++||.++...+.+.|++.
T Consensus 1440 ~~ILiLDEaTSalD~~Te~~Iq~~l~~~ 1467 (1522)
T TIGR00957 1440 TKILVLDEATAAVDLETDNLIQSTIRTQ 1467 (1522)
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999764
No 125
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=100.00 E-value=4.4e-34 Score=271.54 Aligned_cols=161 Identities=29% Similarity=0.424 Sum_probs=137.1
Q ss_pred EEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-------eEEEEeccCc
Q psy208 277 LQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-------LKFGYFSQHH 349 (443)
Q Consensus 277 l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-------~~ig~~~Q~~ 349 (443)
|+++|++++|+ ++++|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+. ..++|++|++
T Consensus 1 l~l~~v~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~~~~~~~~~q~~ 79 (223)
T TIGR03740 1 LETKNLSKRFG-KQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIGSLIESP 79 (223)
T ss_pred CEEEeEEEEEC-CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccccccEEEEcCCC
Confidence 47899999996 568999999999999999999999999999999999999999999987542 3589999985
Q ss_pred ccccccchhHHHHHHH--hCCCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCC
Q psy208 350 VDQLDMNLRCVQLLEA--AFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD 427 (443)
Q Consensus 350 ~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD 427 (443)
. +....++.+++.. .........+..+++.+|+. +..++++.+|||||+||++||++++.+|++|||||||++||
T Consensus 80 ~--~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP~~~LD 156 (223)
T TIGR03740 80 P--LYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLT-NTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLD 156 (223)
T ss_pred C--ccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCc-HHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCC
Confidence 3 3344566666532 11223456778899999996 56788999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHccc
Q psy208 428 IETIEALGKAINKY 441 (443)
Q Consensus 428 ~~s~~~l~~~L~~~ 441 (443)
+.+++.+.+.|.++
T Consensus 157 ~~~~~~l~~~L~~~ 170 (223)
T TIGR03740 157 PIGIQELRELIRSF 170 (223)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999999875
No 126
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=100.00 E-value=3.1e-34 Score=275.72 Aligned_cols=162 Identities=25% Similarity=0.334 Sum_probs=131.7
Q ss_pred EEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCC--CCCCceEEEcCc------------eEE
Q psy208 277 LQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGII--SPTAGTRTVHRN------------LKF 342 (443)
Q Consensus 277 l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~--~p~~G~i~~~~~------------~~i 342 (443)
|+++||+++|+ ++++|+|+||+|++|++++|+||||||||||+|+|+|++ +|++|+|.+.+. ..+
T Consensus 1 l~~~~l~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 79 (243)
T TIGR01978 1 LKIKDLHVSVE-DKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGL 79 (243)
T ss_pred CeEeeEEEEEC-CEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccce
Confidence 47899999996 567999999999999999999999999999999999995 799999987541 238
Q ss_pred EEeccCcccccccchhHHHHHHHh---CCC------CC----HHHHHHHHhcCCCChhhhhccCC-CCCHHHHHHHHHHH
Q psy208 343 GYFSQHHVDQLDMNLRCVQLLEAA---FPG------KP----QEEYRRQLGGFGVSGDLALQFVG-SLSGGQKSRVAFAR 408 (443)
Q Consensus 343 g~~~Q~~~~~l~~~~~~~~~~~~~---~~~------~~----~~~~~~~L~~~gl~~~~~~~~~~-~LSgGekqRl~lA~ 408 (443)
+|++|++. +....++.+++... ... .. .+.+..++..+++.....++++. .|||||||||+||+
T Consensus 80 ~~v~q~~~--~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~ 157 (243)
T TIGR01978 80 FLAFQYPE--EIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQ 157 (243)
T ss_pred Eeeecccc--ccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHH
Confidence 89999863 33344444443211 000 01 23567788999996455677887 59999999999999
Q ss_pred HhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 409 MCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 409 al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
+|+.+|++|||||||++||+.+++.+.+.|.++
T Consensus 158 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~ 190 (243)
T TIGR01978 158 MALLEPKLAILDEIDSGLDIDALKIVAEGINRL 190 (243)
T ss_pred HHhcCCCEEEecCCcccCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999876
No 127
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=3.2e-34 Score=273.65 Aligned_cols=162 Identities=29% Similarity=0.442 Sum_probs=133.2
Q ss_pred EEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcC------------ceEEEE
Q psy208 277 LQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR------------NLKFGY 344 (443)
Q Consensus 277 l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~------------~~~ig~ 344 (443)
|+++||++.|+ ++++|+|+||+|.+|++++|+|+||||||||+++|+|+++|++|+|.+.+ ...++|
T Consensus 1 l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (230)
T TIGR03410 1 LEVSNLNVYYG-QSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAY 79 (230)
T ss_pred CEEEeEEEEeC-CeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeEE
Confidence 57899999996 46899999999999999999999999999999999999999999998753 125899
Q ss_pred eccCcccccccchhHHHHHHHhC--CCCC-HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeC
Q psy208 345 FSQHHVDQLDMNLRCVQLLEAAF--PGKP-QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDE 421 (443)
Q Consensus 345 ~~Q~~~~~l~~~~~~~~~~~~~~--~~~~-~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDE 421 (443)
++|++. +....++.+++.... .... ......++..++......++++.+|||||+||++||++++.+|++|||||
T Consensus 80 ~~q~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~illlDE 157 (230)
T TIGR03410 80 VPQGRE--IFPRLTVEENLLTGLAALPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDE 157 (230)
T ss_pred eccCCc--ccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecC
Confidence 999863 344556666654221 1111 23346667777633356788999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHccc
Q psy208 422 PTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 422 PTn~LD~~s~~~l~~~L~~~ 441 (443)
||++||+.+++.+.+.|.++
T Consensus 158 Pt~~LD~~~~~~l~~~l~~~ 177 (230)
T TIGR03410 158 PTEGIQPSIIKDIGRVIRRL 177 (230)
T ss_pred CcccCCHHHHHHHHHHHHHH
Confidence 99999999999999999765
No 128
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=5.4e-34 Score=290.07 Aligned_cols=165 Identities=24% Similarity=0.376 Sum_probs=142.1
Q ss_pred CCCeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc---------eEEE
Q psy208 273 SPPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN---------LKFG 343 (443)
Q Consensus 273 ~~~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~---------~~ig 343 (443)
..++|+++|++++|+ ++++|+++||+|.+|++++|+|||||||||||++|+|+++|++|+|.+++. ..+|
T Consensus 11 ~~~~L~l~~l~~~~~-~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig 89 (375)
T PRK09452 11 LSPLVELRGISKSFD-GKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHVN 89 (375)
T ss_pred CCceEEEEEEEEEEC-CeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEE
Confidence 346799999999996 567999999999999999999999999999999999999999999988642 3599
Q ss_pred EeccCcccccccchhHHHHHHHhC--CCCC----HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeE
Q psy208 344 YFSQHHVDQLDMNLRCVQLLEAAF--PGKP----QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFL 417 (443)
Q Consensus 344 ~~~Q~~~~~l~~~~~~~~~~~~~~--~~~~----~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lL 417 (443)
|++|++ .+.+..++.+++.... .... ...+..+++.+++. +..++++.+|||||||||+|||||+.+|++|
T Consensus 90 ~vfQ~~--~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~p~~LSgGq~QRVaLARaL~~~P~ll 166 (375)
T PRK09452 90 TVFQSY--ALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLE-EFAQRKPHQLSGGQQQRVAIARAVVNKPKVL 166 (375)
T ss_pred EEecCc--ccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCc-hhhhCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 999986 3566778888775322 1112 23567789999996 5788999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHccc
Q psy208 418 VLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 418 iLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
||||||++||..+++.|.+.|+++
T Consensus 167 LLDEP~s~LD~~~r~~l~~~L~~l 190 (375)
T PRK09452 167 LLDESLSALDYKLRKQMQNELKAL 190 (375)
T ss_pred EEeCCCCcCCHHHHHHHHHHHHHH
Confidence 999999999999999999998764
No 129
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=100.00 E-value=6.3e-34 Score=269.68 Aligned_cols=162 Identities=31% Similarity=0.479 Sum_probs=133.8
Q ss_pred EEEeeeEEEeCCC-CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-----------eEEEE
Q psy208 277 LQLSEVNFEYVPG-KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-----------LKFGY 344 (443)
Q Consensus 277 l~~~~l~~~y~~~-~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~ig~ 344 (443)
|+++|+++.|++. +++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+. ..++|
T Consensus 3 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 82 (220)
T cd03245 3 IEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIGY 82 (220)
T ss_pred EEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEEE
Confidence 7899999999642 57999999999999999999999999999999999999999999988542 25899
Q ss_pred eccCcccccccchhHHHHHHHhCCCCCHHHHHHHHhcCCCChhhhhcc-----------CCCCCHHHHHHHHHHHHhccC
Q psy208 345 FSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQF-----------VGSLSGGQKSRVAFARMCMAA 413 (443)
Q Consensus 345 ~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~-----------~~~LSgGekqRl~lA~al~~~ 413 (443)
++|++. +.. .++.+++...........+..++..+++. +..++. +.+||||||||++||++++.+
T Consensus 83 ~~q~~~--~~~-~tv~e~l~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~ 158 (220)
T cd03245 83 VPQDVT--LFY-GTLRDNITLGAPLADDERILRAAELAGVT-DFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLND 158 (220)
T ss_pred eCCCCc--ccc-chHHHHhhcCCCCCCHHHHHHHHHHcCcH-HHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcC
Confidence 999863 222 46777664322222345567778888875 344443 469999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHcccc
Q psy208 414 PNFLVLDEPTNHLDIETIEALGKAINKYT 442 (443)
Q Consensus 414 p~lLiLDEPTn~LD~~s~~~l~~~L~~~~ 442 (443)
|++|||||||++||+.++..+.+.|.++.
T Consensus 159 p~llllDEPt~~LD~~~~~~l~~~l~~~~ 187 (220)
T cd03245 159 PPILLLDEPTSAMDMNSEERLKERLRQLL 187 (220)
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999999998764
No 130
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.5e-34 Score=280.09 Aligned_cols=165 Identities=30% Similarity=0.400 Sum_probs=137.8
Q ss_pred CeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-------------eE
Q psy208 275 PILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-------------LK 341 (443)
Q Consensus 275 ~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-------------~~ 341 (443)
++|+++|++++|++++++|+++||+|.+|++++|+|+||||||||+++|+|+++|++|+|.+.+. ..
T Consensus 4 ~~l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ 83 (283)
T PRK13636 4 YILKVEELNYNYSDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRES 83 (283)
T ss_pred ceEEEEeEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhh
Confidence 57999999999964567999999999999999999999999999999999999999999987641 24
Q ss_pred EEEeccCcccccccchhHHHHHHHh--CCCCC----HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCC
Q psy208 342 FGYFSQHHVDQLDMNLRCVQLLEAA--FPGKP----QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPN 415 (443)
Q Consensus 342 ig~~~Q~~~~~l~~~~~~~~~~~~~--~~~~~----~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~ 415 (443)
+||++|++...+ ...++.+++... ..+.. ...+..+++.+|+. ...++++.+||||||||++||++|+.+|+
T Consensus 84 ig~v~q~~~~~~-~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~-~~~~~~~~~LS~G~~qrl~laraL~~~p~ 161 (283)
T PRK13636 84 VGMVFQDPDNQL-FSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIE-HLKDKPTHCLSFGQKKRVAIAGVLVMEPK 161 (283)
T ss_pred EEEEecCcchhh-ccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCCh-hhhhCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 899999863222 234666666421 11111 23567788999996 56789999999999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 416 FLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 416 lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
+|||||||++||+.++..+.+.|.++
T Consensus 162 lLilDEPt~gLD~~~~~~l~~~l~~l 187 (283)
T PRK13636 162 VLVLDEPTAGLDPMGVSEIMKLLVEM 187 (283)
T ss_pred EEEEeCCccCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999988764
No 131
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.1e-34 Score=281.91 Aligned_cols=165 Identities=30% Similarity=0.369 Sum_probs=134.8
Q ss_pred eEEEeeeEEEeCCC----CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc------------
Q psy208 276 ILQLSEVNFEYVPG----KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN------------ 339 (443)
Q Consensus 276 ~l~~~~l~~~y~~~----~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------------ 339 (443)
.|+++||+++|++. +++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+.
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (280)
T PRK13649 2 GINLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIK 81 (280)
T ss_pred eEEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHH
Confidence 38899999999642 36999999999999999999999999999999999999999999987541
Q ss_pred ---eEEEEeccCcccccccchhHHHHHHHh--CCCCC----HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHh
Q psy208 340 ---LKFGYFSQHHVDQLDMNLRCVQLLEAA--FPGKP----QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMC 410 (443)
Q Consensus 340 ---~~ig~~~Q~~~~~l~~~~~~~~~~~~~--~~~~~----~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al 410 (443)
..++|++|++...+.. .++.+++... ..... ...+..++..+++.....++++.+||||||||++||+||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al 160 (280)
T PRK13649 82 QIRKKVGLVFQFPESQLFE-ETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGIL 160 (280)
T ss_pred HHHhheEEEeeChhhhhcc-ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHH
Confidence 2489999985222222 3666655321 11111 223567788899964567899999999999999999999
Q ss_pred ccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 411 MAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 411 ~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
+.+|++|||||||++||+.+++.+.+.|.++
T Consensus 161 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~ 191 (280)
T PRK13649 161 AMEPKILVLDEPTAGLDPKGRKELMTLFKKL 191 (280)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998865
No 132
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=1.9e-31 Score=312.19 Aligned_cols=162 Identities=23% Similarity=0.310 Sum_probs=136.3
Q ss_pred eEEEeeeEEEeCCC-CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcC-----------ceEEE
Q psy208 276 ILQLSEVNFEYVPG-KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR-----------NLKFG 343 (443)
Q Consensus 276 ~l~~~~l~~~y~~~-~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~ig 343 (443)
.|+++||+|+|+++ +++|+|+||+|++|+++||+|++|||||||+++|.|+++|++|+|.+++ +..++
T Consensus 1308 ~I~f~nVsf~Y~~~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~ 1387 (1560)
T PTZ00243 1308 SLVFEGVQMRYREGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFS 1387 (1560)
T ss_pred eEEEEEEEEEeCCCCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcce
Confidence 49999999999754 4599999999999999999999999999999999999999999999864 23699
Q ss_pred EeccCcccccccchhHHHHHHHhCCCCCHHHHHHHHhcCCCChhh------hh----ccCCCCCHHHHHHHHHHHHhccC
Q psy208 344 YFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDL------AL----QFVGSLSGGQKSRVAFARMCMAA 413 (443)
Q Consensus 344 ~~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~------~~----~~~~~LSgGekqRl~lA~al~~~ 413 (443)
|+||++. +. +.|+.+++.. +...+++++...++..++.... .+ ....+||||||||++|||||+++
T Consensus 1388 iVpQdp~--LF-~gTIreNIdp-~~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~ 1463 (1560)
T PTZ00243 1388 MIPQDPV--LF-DGTVRQNVDP-FLEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKK 1463 (1560)
T ss_pred EECCCCc--cc-cccHHHHhCc-ccCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcC
Confidence 9999974 22 3477888743 3345678888999888875311 12 23357999999999999999995
Q ss_pred -CCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 414 -PNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 414 -p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
|+||||||||++||.++.+.+.+.|.+.
T Consensus 1464 ~~~ILlLDEATSaLD~~te~~Iq~~L~~~ 1492 (1560)
T PTZ00243 1464 GSGFILMDEATANIDPALDRQIQATVMSA 1492 (1560)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHHHHH
Confidence 8999999999999999999999998764
No 133
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.7e-34 Score=280.60 Aligned_cols=164 Identities=29% Similarity=0.382 Sum_probs=135.5
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc------------eEEE
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN------------LKFG 343 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------------~~ig 343 (443)
+|+++|++++|++++++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+. ..++
T Consensus 1 ml~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 80 (274)
T PRK13644 1 MIRLENVSYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVG 80 (274)
T ss_pred CEEEEEEEEEcCCCCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheE
Confidence 4789999999964567999999999999999999999999999999999999999999987531 2489
Q ss_pred EeccCcccccccchhHHHHHHHh--CCCCC----HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeE
Q psy208 344 YFSQHHVDQLDMNLRCVQLLEAA--FPGKP----QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFL 417 (443)
Q Consensus 344 ~~~Q~~~~~l~~~~~~~~~~~~~--~~~~~----~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lL 417 (443)
|++|++...+ ...++.+++... ..... .+.+..++..+|+. ...++++..|||||+||++||+||+.+|++|
T Consensus 81 ~v~q~~~~~~-~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LS~G~~qrv~laral~~~p~ll 158 (274)
T PRK13644 81 IVFQNPETQF-VGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLE-KYRHRSPKTLSGGQGQCVALAGILTMEPECL 158 (274)
T ss_pred EEEEChhhhc-ccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCH-HHhcCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 9999863222 234666665321 11111 23466788899985 5678899999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHccc
Q psy208 418 VLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 418 iLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
||||||++||+.++..+.+.|.++
T Consensus 159 lLDEPt~gLD~~~~~~l~~~l~~l 182 (274)
T PRK13644 159 IFDEVTSMLDPDSGIAVLERIKKL 182 (274)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHH
Confidence 999999999999999999999765
No 134
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.9e-34 Score=281.07 Aligned_cols=165 Identities=28% Similarity=0.405 Sum_probs=138.3
Q ss_pred CeEEEeeeEEEeCC-CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-----------eEE
Q psy208 275 PILQLSEVNFEYVP-GKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-----------LKF 342 (443)
Q Consensus 275 ~~l~~~~l~~~y~~-~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~i 342 (443)
++|+++||++.|++ .+++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+. ..+
T Consensus 4 ~~l~~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13635 4 EIIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQV 83 (279)
T ss_pred ceEEEEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhhe
Confidence 57999999999963 357999999999999999999999999999999999999999999987542 258
Q ss_pred EEeccCcccccccchhHHHHHHHhC--CCCC----HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCe
Q psy208 343 GYFSQHHVDQLDMNLRCVQLLEAAF--PGKP----QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNF 416 (443)
Q Consensus 343 g~~~Q~~~~~l~~~~~~~~~~~~~~--~~~~----~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~l 416 (443)
||++|++. .+....++.+++.... .... ...+..++..+|+. ...++++..|||||||||+||++|+.+|++
T Consensus 84 ~~~~q~~~-~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~-~~~~~~~~~LS~G~~qrv~laral~~~p~l 161 (279)
T PRK13635 84 GMVFQNPD-NQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGME-DFLNREPHRLSGGQKQRVAIAGVLALQPDI 161 (279)
T ss_pred EEEEeCHH-HhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCCh-hhhhCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 99999862 1233456677664211 1112 23467888999996 578899999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 417 LVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 417 LiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
|||||||++||+.++..+.+.|.++
T Consensus 162 llLDEPt~gLD~~~~~~l~~~l~~l 186 (279)
T PRK13635 162 IILDEATSMLDPRGRREVLETVRQL 186 (279)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999765
No 135
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=100.00 E-value=5.4e-34 Score=259.13 Aligned_cols=137 Identities=25% Similarity=0.421 Sum_probs=120.0
Q ss_pred EEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCceEEEEeccCcccccccc
Q psy208 277 LQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMN 356 (443)
Q Consensus 277 l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ig~~~Q~~~~~l~~~ 356 (443)
|+++|++++|++++++|+++||+|.+|++++|+|+||||||||+++|+|+++|++|+|.+.....++|++|++. +. .
T Consensus 1 i~~~~~~~~~~~~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~--~~-~ 77 (166)
T cd03223 1 IELENLSLATPDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPY--LP-L 77 (166)
T ss_pred CEEEEEEEEcCCCCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCc--cc-c
Confidence 47899999996446799999999999999999999999999999999999999999999987778999999863 22 3
Q ss_pred hhHHHHHHHhCCCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHH
Q psy208 357 LRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGK 436 (443)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~ 436 (443)
.++.+++... ++..||||||||++|||+++.+|++|||||||++||+.+++.+.+
T Consensus 78 ~tv~~nl~~~-------------------------~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~ 132 (166)
T cd03223 78 GTLREQLIYP-------------------------WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQ 132 (166)
T ss_pred ccHHHHhhcc-------------------------CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHH
Confidence 4555554210 357899999999999999999999999999999999999999999
Q ss_pred HHccc
Q psy208 437 AINKY 441 (443)
Q Consensus 437 ~L~~~ 441 (443)
.|.++
T Consensus 133 ~l~~~ 137 (166)
T cd03223 133 LLKEL 137 (166)
T ss_pred HHHHh
Confidence 98764
No 136
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=100.00 E-value=4.5e-34 Score=279.07 Aligned_cols=167 Identities=22% Similarity=0.370 Sum_probs=137.6
Q ss_pred CeEEEeeeEEEeCC--------CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-------
Q psy208 275 PILQLSEVNFEYVP--------GKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN------- 339 (443)
Q Consensus 275 ~~l~~~~l~~~y~~--------~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------- 339 (443)
++|+++||++.|++ ++++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+.
T Consensus 2 ~~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~ 81 (268)
T PRK10419 2 TLLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNR 81 (268)
T ss_pred ceEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccCh
Confidence 47999999999963 467999999999999999999999999999999999999999999987542
Q ss_pred -------eEEEEeccCcccccccchhHHHHHHH---hCCCC----CHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHH
Q psy208 340 -------LKFGYFSQHHVDQLDMNLRCVQLLEA---AFPGK----PQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVA 405 (443)
Q Consensus 340 -------~~ig~~~Q~~~~~l~~~~~~~~~~~~---~~~~~----~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~ 405 (443)
..++|++|++...+....++.+++.. .+... ....+..++..+|+.....++++..|||||+||++
T Consensus 82 ~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~ 161 (268)
T PRK10419 82 AQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVC 161 (268)
T ss_pred hHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHH
Confidence 25999999863234444455544321 11111 12356788999999655678999999999999999
Q ss_pred HHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 406 FARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 406 lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
||++|+.+|++|||||||++||+.+++.+.+.|.++
T Consensus 162 laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~ 197 (268)
T PRK10419 162 LARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKL 197 (268)
T ss_pred HHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998765
No 137
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.7e-34 Score=279.70 Aligned_cols=165 Identities=31% Similarity=0.432 Sum_probs=137.0
Q ss_pred CeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-----------eEEE
Q psy208 275 PILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-----------LKFG 343 (443)
Q Consensus 275 ~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~ig 343 (443)
.+++++|++++|++.+.+|+|+||+|.+|++++|+|+||||||||+|+|+|+++|++|+|.+.+. ..++
T Consensus 2 ~~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (277)
T PRK13652 2 HLIETRDLCYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVG 81 (277)
T ss_pred ceEEEEEEEEEeCCCCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheE
Confidence 46899999999964456999999999999999999999999999999999999999999987542 2489
Q ss_pred EeccCcccccccchhHHHHHHHh--CCCCC----HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeE
Q psy208 344 YFSQHHVDQLDMNLRCVQLLEAA--FPGKP----QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFL 417 (443)
Q Consensus 344 ~~~Q~~~~~l~~~~~~~~~~~~~--~~~~~----~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lL 417 (443)
|++|++...+. ..++.+++... ..... ...+..++..+++. +..++++..||||||||++||+||+.+|++|
T Consensus 82 ~v~q~~~~~~~-~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~Gq~qrl~laraL~~~p~ll 159 (277)
T PRK13652 82 LVFQNPDDQIF-SPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLE-ELRDRVPHHLSGGEKKRVAIAGVIAMEPQVL 159 (277)
T ss_pred EEecCcccccc-cccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCCh-hHhcCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 99998632222 34666665321 11122 23467889999996 5678999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHccc
Q psy208 418 VLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 418 iLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
||||||++||+.++..+.+.|.++
T Consensus 160 ilDEPt~gLD~~~~~~l~~~l~~l 183 (277)
T PRK13652 160 VLDEPTAGLDPQGVKELIDFLNDL 183 (277)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHH
Confidence 999999999999999999998764
No 138
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.8e-34 Score=276.22 Aligned_cols=162 Identities=25% Similarity=0.397 Sum_probs=135.8
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-----------eEEEE
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-----------LKFGY 344 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~ig~ 344 (443)
+|+++|++++|+ ++++|+++||+|.+|++++|+|+||||||||+++|+|+++|++|+|.+.+. ..++|
T Consensus 2 ~l~~~~l~~~~~-~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (255)
T PRK11231 2 TLRTENLTVGYG-TKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLAL 80 (255)
T ss_pred EEEEEeEEEEEC-CEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEE
Confidence 589999999996 568999999999999999999999999999999999999999999987542 24899
Q ss_pred eccCcccccccchhHHHHHHHh-------CC---CCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCC
Q psy208 345 FSQHHVDQLDMNLRCVQLLEAA-------FP---GKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAP 414 (443)
Q Consensus 345 ~~Q~~~~~l~~~~~~~~~~~~~-------~~---~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p 414 (443)
++|++. +....++.+++... +. ......+..++..+++. ...++++.+|||||+||++||+|++.+|
T Consensus 81 ~~q~~~--~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~laral~~~p 157 (255)
T PRK11231 81 LPQHHL--TPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRIN-HLADRRLTDLSGGQRQRAFLAMVLAQDT 157 (255)
T ss_pred ecccCC--CCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCH-HHHcCCcccCCHHHHHHHHHHHHHhcCC
Confidence 999863 33344566655321 11 11133567788889985 4678999999999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 415 NFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 415 ~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
++|||||||++||+.+++.+.+.|.++
T Consensus 158 ~llllDEP~~~LD~~~~~~l~~~l~~l 184 (255)
T PRK11231 158 PVVLLDEPTTYLDINHQVELMRLMREL 184 (255)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHH
Confidence 999999999999999999999998764
No 139
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=100.00 E-value=6.7e-34 Score=287.70 Aligned_cols=162 Identities=27% Similarity=0.440 Sum_probs=139.5
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc---------eEEEEec
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN---------LKFGYFS 346 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~---------~~ig~~~ 346 (443)
+|+++|++++|+ ++.+|+|+||+|.+|++++|+||||||||||||+|+|+++|++|+|.+++. ..++|++
T Consensus 2 ~L~i~~l~~~~~-~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~v~ 80 (353)
T PRK10851 2 SIEIANIKKSFG-RTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFVF 80 (353)
T ss_pred EEEEEEEEEEeC-CeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEEEe
Confidence 489999999996 467999999999999999999999999999999999999999999988542 3599999
Q ss_pred cCcccccccchhHHHHHHHhCC------CCC----HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCe
Q psy208 347 QHHVDQLDMNLRCVQLLEAAFP------GKP----QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNF 416 (443)
Q Consensus 347 Q~~~~~l~~~~~~~~~~~~~~~------~~~----~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~l 416 (443)
|++ .+.+..++.+++..... ... ...+.++++.+++. +..++++.+|||||||||+|||||+.+|++
T Consensus 81 Q~~--~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGq~QRvalArAL~~~P~l 157 (353)
T PRK10851 81 QHY--ALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLA-HLADRYPAQLSGGQKQRVALARALAVEPQI 157 (353)
T ss_pred cCc--ccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCc-hhhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 985 35566777777753211 111 24567889999996 578899999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 417 LVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 417 LiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
|||||||++||+.+++.+.+.|.++
T Consensus 158 lLLDEP~s~LD~~~r~~l~~~L~~l 182 (353)
T PRK10851 158 LLLDEPFGALDAQVRKELRRWLRQL 182 (353)
T ss_pred EEEeCCCccCCHHHHHHHHHHHHHH
Confidence 9999999999999999999998764
No 140
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=100.00 E-value=8.1e-34 Score=273.89 Aligned_cols=163 Identities=24% Similarity=0.311 Sum_probs=135.4
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCC-----CceEEEcCc-----------
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPT-----AGTRTVHRN----------- 339 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~-----~G~i~~~~~----------- 339 (443)
+|+++||+++|+ +.++|+|+||+|++|++++|+|+||||||||+++|+|+++|+ +|+|.+.+.
T Consensus 1 ~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~ 79 (247)
T TIGR00972 1 AIEIENLNLFYG-EKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVE 79 (247)
T ss_pred CEEEEEEEEEEC-CeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHH
Confidence 478999999996 467999999999999999999999999999999999999998 999987431
Q ss_pred --eEEEEeccCcccccccchhHHHHHHHh--CCC-CC----HHHHHHHHhcCCCCh---hhhhccCCCCCHHHHHHHHHH
Q psy208 340 --LKFGYFSQHHVDQLDMNLRCVQLLEAA--FPG-KP----QEEYRRQLGGFGVSG---DLALQFVGSLSGGQKSRVAFA 407 (443)
Q Consensus 340 --~~ig~~~Q~~~~~l~~~~~~~~~~~~~--~~~-~~----~~~~~~~L~~~gl~~---~~~~~~~~~LSgGekqRl~lA 407 (443)
..++|++|++. +.. .++.+++... ... .. ...+..++..+|+.. +..++++.+||||||||++||
T Consensus 80 ~~~~i~~v~q~~~--~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~la 156 (247)
T TIGR00972 80 LRRRVGMVFQKPN--PFP-MSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIA 156 (247)
T ss_pred HHhheEEEecCcc--cCC-CCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHH
Confidence 25899999863 333 5666665421 111 11 235677889999862 456789999999999999999
Q ss_pred HHhccCCCeEEEeCCCCCCCHHHHHHHHHHHcccc
Q psy208 408 RMCMAAPNFLVLDEPTNHLDIETIEALGKAINKYT 442 (443)
Q Consensus 408 ~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~~ 442 (443)
++|+.+|++|||||||++||+.++..+.+.|.++.
T Consensus 157 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~ 191 (247)
T TIGR00972 157 RALAVEPEVLLLDEPTSALDPIATGKIEELIQELK 191 (247)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998753
No 141
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.5e-34 Score=268.03 Aligned_cols=159 Identities=26% Similarity=0.398 Sum_probs=133.1
Q ss_pred EEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc---------eEEEEecc
Q psy208 277 LQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN---------LKFGYFSQ 347 (443)
Q Consensus 277 l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~---------~~ig~~~Q 347 (443)
|+++|++++|+ ++. .|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+. ..++|++|
T Consensus 1 i~~~~l~~~~~-~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q 77 (211)
T cd03298 1 VRLDKIRFSYG-EQP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQ 77 (211)
T ss_pred CEEEeEEEEeC-CEe--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccEEEEec
Confidence 47899999996 333 3999999999999999999999999999999999999999988542 25899999
Q ss_pred CcccccccchhHHHHHHHhCC---C---CCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeC
Q psy208 348 HHVDQLDMNLRCVQLLEAAFP---G---KPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDE 421 (443)
Q Consensus 348 ~~~~~l~~~~~~~~~~~~~~~---~---~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDE 421 (443)
++. +....++.+++..... . .....+..++..+++. ...++++.+||||||||++||++++.+|++|||||
T Consensus 78 ~~~--~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~ia~al~~~p~llllDE 154 (211)
T cd03298 78 ENN--LFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLA-GLEKRLPGELSGGERQRVALARVLVRDKPVLLLDE 154 (211)
T ss_pred ccc--cCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCH-HHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 863 3445577776642211 1 1234577889999986 46788999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHccc
Q psy208 422 PTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 422 PTn~LD~~s~~~l~~~L~~~ 441 (443)
||++||+.+++.+.+.|.++
T Consensus 155 P~~~LD~~~~~~l~~~l~~~ 174 (211)
T cd03298 155 PFAALDPALRAEMLDLVLDL 174 (211)
T ss_pred CcccCCHHHHHHHHHHHHHH
Confidence 99999999999999999765
No 142
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.6e-34 Score=278.86 Aligned_cols=166 Identities=25% Similarity=0.368 Sum_probs=137.5
Q ss_pred CCeEEEeeeEEEeCC-CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcC-----------ceE
Q psy208 274 PPILQLSEVNFEYVP-GKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR-----------NLK 341 (443)
Q Consensus 274 ~~~l~~~~l~~~y~~-~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~ 341 (443)
.++|+++|++++|++ ++++|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++ ...
T Consensus 5 ~~~l~~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 84 (271)
T PRK13632 5 SVMIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKK 84 (271)
T ss_pred ceEEEEEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcc
Confidence 358999999999952 46799999999999999999999999999999999999999999998753 124
Q ss_pred EEEeccCcccccccchhHHHHHHHh--CCCCCH----HHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCC
Q psy208 342 FGYFSQHHVDQLDMNLRCVQLLEAA--FPGKPQ----EEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPN 415 (443)
Q Consensus 342 ig~~~Q~~~~~l~~~~~~~~~~~~~--~~~~~~----~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~ 415 (443)
++|++|++.. .....++.+++... ...... ..+.+++..+++. ...++++..|||||+||++||+||+.+|+
T Consensus 85 i~~v~q~~~~-~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrl~laral~~~p~ 162 (271)
T PRK13632 85 IGIIFQNPDN-QFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGME-DYLDKEPQNLSGGQKQRVAIASVLALNPE 162 (271)
T ss_pred eEEEEeCHHH-hcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCH-HHhhCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 8999998621 22345666665421 111122 2356788999986 56789999999999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 416 FLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 416 lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
+|||||||++||+.+++.+.+.|.++
T Consensus 163 lllLDEP~~gLD~~~~~~l~~~l~~~ 188 (271)
T PRK13632 163 IIIFDESTSMLDPKGKREIKKIMVDL 188 (271)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999865
No 143
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.7e-34 Score=276.69 Aligned_cols=162 Identities=28% Similarity=0.445 Sum_probs=141.3
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc------------eEEE
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN------------LKFG 343 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------------~~ig 343 (443)
+|+++|+++.|+ ...+++||||+|+.|+.+|++||||||||||||+|+|++.|++|.|.+++. .+||
T Consensus 2 ~i~i~~~~~~~~-~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VG 80 (345)
T COG1118 2 SIRINNVKKRFG-AFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVG 80 (345)
T ss_pred ceeehhhhhhcc-cccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhccee
Confidence 588999999995 678999999999999999999999999999999999999999999988653 3699
Q ss_pred EeccCcccccccchhHHHHHHHhC------CC--CCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCC
Q psy208 344 YFSQHHVDQLDMNLRCVQLLEAAF------PG--KPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPN 415 (443)
Q Consensus 344 ~~~Q~~~~~l~~~~~~~~~~~~~~------~~--~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~ 415 (443)
|++|+.. +.+.+|+.+++.-.. +. ....++.++|..+.+. ...+++|.+|||||||||+|||||+.+|+
T Consensus 81 fvFQ~YA--LF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~-~la~ryP~QLSGGQrQRVALARALA~eP~ 157 (345)
T COG1118 81 FVFQHYA--LFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLE-GLADRYPAQLSGGQRQRVALARALAVEPK 157 (345)
T ss_pred EEEechh--hcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhccc-chhhcCchhcChHHHHHHHHHHHhhcCCC
Confidence 9999863 677888888876432 11 1244677889988886 57889999999999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 416 FLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 416 lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
+|+||||+++||...+..|...|++.
T Consensus 158 vLLLDEPf~ALDa~vr~~lr~wLr~~ 183 (345)
T COG1118 158 VLLLDEPFGALDAKVRKELRRWLRKL 183 (345)
T ss_pred eEeecCCchhhhHHHHHHHHHHHHHH
Confidence 99999999999999999999888754
No 144
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=6.8e-34 Score=304.53 Aligned_cols=164 Identities=30% Similarity=0.472 Sum_probs=137.7
Q ss_pred CCeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCceEEEEeccCccccc
Q psy208 274 PPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQL 353 (443)
Q Consensus 274 ~~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ig~~~Q~~~~~l 353 (443)
+++|+++||+++|++++++|+|+||+|.+|++++|+||||||||||||+|+|+++|++|+|.+.....+||++|++. +
T Consensus 4 ~~~l~i~~l~~~y~~~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~--~ 81 (556)
T PRK11819 4 QYIYTMNRVSKVVPPKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPGIKVGYLPQEPQ--L 81 (556)
T ss_pred cEEEEEeeEEEEeCCCCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCC--C
Confidence 56899999999996247899999999999999999999999999999999999999999999876678999999863 3
Q ss_pred ccchhHHHHHHHh-----------------CCCC-------------------------CHHHHHHHHhcCCCChhhhhc
Q psy208 354 DMNLRCVQLLEAA-----------------FPGK-------------------------PQEEYRRQLGGFGVSGDLALQ 391 (443)
Q Consensus 354 ~~~~~~~~~~~~~-----------------~~~~-------------------------~~~~~~~~L~~~gl~~~~~~~ 391 (443)
....++.+++... .... ....+..++..+|+. ..++
T Consensus 82 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~--~~~~ 159 (556)
T PRK11819 82 DPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCP--PWDA 159 (556)
T ss_pred CCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCC--cccC
Confidence 3334544443210 0000 123466788889984 3688
Q ss_pred cCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 392 FVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 392 ~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
++++|||||||||+||++++.+|++|||||||||||+.++.+|.+.|+++
T Consensus 160 ~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~ 209 (556)
T PRK11819 160 KVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDY 209 (556)
T ss_pred chhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999876
No 145
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.5e-34 Score=274.27 Aligned_cols=164 Identities=22% Similarity=0.305 Sum_probs=134.4
Q ss_pred CCeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCC-----CCCceEEEcC----------
Q psy208 274 PPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIIS-----PTAGTRTVHR---------- 338 (443)
Q Consensus 274 ~~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~-----p~~G~i~~~~---------- 338 (443)
.|+|+++||+++|+ ++++|+++||+|.+|++++|+||||||||||+|+|+|+++ |++|+|.+.+
T Consensus 4 ~~~l~~~~l~~~~~-~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (253)
T PRK14242 4 PPKMEARGLSFFYG-DFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDV 82 (253)
T ss_pred CcEEEEeeeEEEEC-CeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCH
Confidence 46899999999996 4679999999999999999999999999999999999864 6899998753
Q ss_pred ---ceEEEEeccCcccccccchhHHHHHHHh--CCCC-----CHHHHHHHHhcCCCCh---hhhhccCCCCCHHHHHHHH
Q psy208 339 ---NLKFGYFSQHHVDQLDMNLRCVQLLEAA--FPGK-----PQEEYRRQLGGFGVSG---DLALQFVGSLSGGQKSRVA 405 (443)
Q Consensus 339 ---~~~ig~~~Q~~~~~l~~~~~~~~~~~~~--~~~~-----~~~~~~~~L~~~gl~~---~~~~~~~~~LSgGekqRl~ 405 (443)
...++|++|++. +.. .++.+++... .... ....+..++..+++.. ...++++.+|||||||||+
T Consensus 83 ~~~~~~i~~v~q~~~--~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~ 159 (253)
T PRK14242 83 VELRRRVGMVFQKPN--PFP-KSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLC 159 (253)
T ss_pred HHHhhcEEEEecCCC--CCc-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHH
Confidence 125899999863 222 3666665421 1111 1235667788888742 3457889999999999999
Q ss_pred HHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 406 FARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 406 lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
||++++.+|++|||||||++||+.+++.+.+.|.++
T Consensus 160 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~ 195 (253)
T PRK14242 160 IARALAVEPEVLLMDEPASALDPIATQKIEELIHEL 195 (253)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999875
No 146
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=100.00 E-value=7.3e-34 Score=276.58 Aligned_cols=163 Identities=25% Similarity=0.361 Sum_probs=137.0
Q ss_pred CeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCC---CceEEEcCc------------
Q psy208 275 PILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPT---AGTRTVHRN------------ 339 (443)
Q Consensus 275 ~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~---~G~i~~~~~------------ 339 (443)
++|+++||+++|+ ++++|+++||+|.+|++++|+||||||||||+++|+|+++|+ +|+|.+.+.
T Consensus 3 ~~l~~~nl~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~ 81 (262)
T PRK09984 3 TIIRVEKLAKTFN-QHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDI 81 (262)
T ss_pred cEEEEeeEEEEeC-CeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhH
Confidence 5899999999996 578999999999999999999999999999999999999986 499876541
Q ss_pred ----eEEEEeccCcccccccchhHHHHHHHhC--------------CCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHH
Q psy208 340 ----LKFGYFSQHHVDQLDMNLRCVQLLEAAF--------------PGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQK 401 (443)
Q Consensus 340 ----~~ig~~~Q~~~~~l~~~~~~~~~~~~~~--------------~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGek 401 (443)
..++|++|++. +.+..++.+++.... .......+..++..+|+. ...++++.+||||||
T Consensus 82 ~~~~~~i~~~~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~ 158 (262)
T PRK09984 82 RKSRANTGYIFQQFN--LVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMV-HFAHQRVSTLSGGQQ 158 (262)
T ss_pred HHHHhheEEEccccc--cccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCH-HHHhCCccccCHHHH
Confidence 14899999863 344556666664211 011134577889999986 567899999999999
Q ss_pred HHHHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 402 SRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 402 qRl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
|||+||||++.+|++|||||||++||+.+++.+.+.|.++
T Consensus 159 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~ 198 (262)
T PRK09984 159 QRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDI 198 (262)
T ss_pred HHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999875
No 147
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.9e-34 Score=279.87 Aligned_cols=165 Identities=28% Similarity=0.401 Sum_probs=137.4
Q ss_pred CeEEEeeeEEEeCCC--CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-----------eE
Q psy208 275 PILQLSEVNFEYVPG--KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-----------LK 341 (443)
Q Consensus 275 ~~l~~~~l~~~y~~~--~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~ 341 (443)
++|+++||++.|++. +++|+|+||+|.+|++++|+|+||||||||+++|+|+++|++|+|.+.+. ..
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (279)
T PRK13650 3 NIIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHK 82 (279)
T ss_pred ceEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhh
Confidence 369999999999632 46999999999999999999999999999999999999999999987542 25
Q ss_pred EEEeccCcccccccchhHHHHHHHh--CCCCC----HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCC
Q psy208 342 FGYFSQHHVDQLDMNLRCVQLLEAA--FPGKP----QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPN 415 (443)
Q Consensus 342 ig~~~Q~~~~~l~~~~~~~~~~~~~--~~~~~----~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~ 415 (443)
+||++|++.. .....++.+++... ..+.. ...+..+++.+|+. +..++++.+||||||||++||+||+.+|+
T Consensus 83 i~~v~q~~~~-~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~-~~~~~~~~~LSgGq~qrv~lAral~~~p~ 160 (279)
T PRK13650 83 IGMVFQNPDN-QFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQ-DFKEREPARLSGGQKQRVAIAGAVAMRPK 160 (279)
T ss_pred ceEEEcChHH-hcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCH-hHhhCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 8999998632 22344666666421 11112 24567889999996 57789999999999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 416 FLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 416 lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
+|||||||++||+.++..+.+.|.++
T Consensus 161 lLlLDEPt~~LD~~~~~~l~~~l~~l 186 (279)
T PRK13650 161 IIILDEATSMLDPEGRLELIKTIKGI 186 (279)
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHH
Confidence 99999999999999999999998765
No 148
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-33 Score=278.79 Aligned_cols=165 Identities=27% Similarity=0.321 Sum_probs=134.3
Q ss_pred eEEEeeeEEEeCCC----CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc------------
Q psy208 276 ILQLSEVNFEYVPG----KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN------------ 339 (443)
Q Consensus 276 ~l~~~~l~~~y~~~----~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------------ 339 (443)
.|+++|++++|++. .++|+|+||+|.+|++++|+||||||||||+|+|+|+++|++|+|.+.+.
T Consensus 6 ~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 85 (289)
T PRK13645 6 DIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEV 85 (289)
T ss_pred eEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccccH
Confidence 58999999999643 25999999999999999999999999999999999999999999976431
Q ss_pred ----eEEEEeccCcccccccchhHHHHHHH--hCCCCCH----HHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHH
Q psy208 340 ----LKFGYFSQHHVDQLDMNLRCVQLLEA--AFPGKPQ----EEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARM 409 (443)
Q Consensus 340 ----~~ig~~~Q~~~~~l~~~~~~~~~~~~--~~~~~~~----~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~a 409 (443)
..++|++|++...+. ..++.+++.. ....... ..+..++..+++.....++++.+||||||||++||||
T Consensus 86 ~~~~~~i~~v~q~~~~~~~-~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~lara 164 (289)
T PRK13645 86 KRLRKEIGLVFQFPEYQLF-QETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGI 164 (289)
T ss_pred HHHhccEEEEEeCcchhhh-hhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHH
Confidence 248999998632222 2355555532 1111111 3456788889986456789999999999999999999
Q ss_pred hccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 410 CMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 410 l~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
|+.+|++|||||||++||+.+++.+.+.|.++
T Consensus 165 l~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~ 196 (289)
T PRK13645 165 IAMDGNTLVLDEPTGGLDPKGEEDFINLFERL 196 (289)
T ss_pred HHhCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988765
No 149
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-33 Score=275.93 Aligned_cols=164 Identities=24% Similarity=0.382 Sum_probs=137.6
Q ss_pred CCeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-----------eEE
Q psy208 274 PPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-----------LKF 342 (443)
Q Consensus 274 ~~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~i 342 (443)
..+|+++||+++|+ ++.+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+. ..+
T Consensus 5 ~~~l~i~~l~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 83 (265)
T PRK10253 5 VARLRGEQLTLGYG-KYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRI 83 (265)
T ss_pred ccEEEEEEEEEEEC-CEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhhe
Confidence 35799999999996 567999999999999999999999999999999999999999999987542 248
Q ss_pred EEeccCcccccccchhHHHHHHHh-CC------CC---CHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhcc
Q psy208 343 GYFSQHHVDQLDMNLRCVQLLEAA-FP------GK---PQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMA 412 (443)
Q Consensus 343 g~~~Q~~~~~l~~~~~~~~~~~~~-~~------~~---~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~ 412 (443)
+|++|++. +....++.+++... .. .. ....+..++..+++. ...++++.+||||||||++||||++.
T Consensus 84 ~~v~q~~~--~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~Gq~qrv~laral~~ 160 (265)
T PRK10253 84 GLLAQNAT--TPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGIT-HLADQSVDTLSGGQRQRAWIAMVLAQ 160 (265)
T ss_pred EEeeccCc--CCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCH-HHhcCCcccCChHHHHHHHHHHHHhc
Confidence 99999863 33345666665431 11 01 123567788999985 56789999999999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 413 APNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 413 ~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
+|++|||||||++||+.+++.+.+.|.++
T Consensus 161 ~p~llllDEPt~gLD~~~~~~l~~~L~~l 189 (265)
T PRK10253 161 ETAIMLLDEPTTWLDISHQIDLLELLSEL 189 (265)
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999765
No 150
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=2.4e-35 Score=266.76 Aligned_cols=163 Identities=28% Similarity=0.431 Sum_probs=139.5
Q ss_pred CeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcC------------ceEE
Q psy208 275 PILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR------------NLKF 342 (443)
Q Consensus 275 ~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~------------~~~i 342 (443)
.+|.++|+.|+|+ +++++++|||+|++||++||+|||||||||.+.+++|+.+|++|.|.++. +..+
T Consensus 3 ~~L~a~~l~K~y~-kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGi 81 (243)
T COG1137 3 STLVAENLAKSYK-KRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGI 81 (243)
T ss_pred cEEEehhhhHhhC-CeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCc
Confidence 4689999999995 68899999999999999999999999999999999999999999998863 3469
Q ss_pred EEeccCcccccccchhHHHHHHHhC----CCC----CHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCC
Q psy208 343 GYFSQHHVDQLDMNLRCVQLLEAAF----PGK----PQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAP 414 (443)
Q Consensus 343 g~~~Q~~~~~l~~~~~~~~~~~~~~----~~~----~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p 414 (443)
||+||++. .+...++.+++.... ... ...++.++|+.|.+. ...+++..+||||||+|+.|||||+.+|
T Consensus 82 gYLpQE~S--IFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~-hlr~~~a~sLSGGERRR~EIARaLa~~P 158 (243)
T COG1137 82 GYLPQEAS--IFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHIT-HLRDSKAYSLSGGERRRVEIARALAANP 158 (243)
T ss_pred ccccccch--HhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchH-HHhcCcccccccchHHHHHHHHHHhcCC
Confidence 99999973 455677777765421 111 122466899999996 5778999999999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 415 NFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 415 ~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
.+++||||++|+||.++..+.+++...
T Consensus 159 ~fiLLDEPFAGVDPiaV~dIq~iI~~L 185 (243)
T COG1137 159 KFILLDEPFAGVDPIAVIDIQRIIKHL 185 (243)
T ss_pred CEEEecCCccCCCchhHHHHHHHHHHH
Confidence 999999999999999999988887654
No 151
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-33 Score=306.96 Aligned_cols=163 Identities=26% Similarity=0.424 Sum_probs=135.1
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCceEEEEeccCccccccc
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDM 355 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ig~~~Q~~~~~l~~ 355 (443)
+|+++||+++|+ ++++|+|+||+|.+|+++||+||||||||||||+|+|+++|++|+|.+.+...++|++|++.. ..
T Consensus 1 ~i~i~nls~~~g-~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~~i~~~~q~~~~-~~- 77 (638)
T PRK10636 1 MIVFSSLQIRRG-VRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQLAWVNQETPA-LP- 77 (638)
T ss_pred CEEEEEEEEEeC-CceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCC-CC-
Confidence 589999999996 578999999999999999999999999999999999999999999999877789999986421 11
Q ss_pred chhHHHHH-----------------------------HHh---CCC-CCHHHHHHHHhcCCCChhhhhccCCCCCHHHHH
Q psy208 356 NLRCVQLL-----------------------------EAA---FPG-KPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKS 402 (443)
Q Consensus 356 ~~~~~~~~-----------------------------~~~---~~~-~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekq 402 (443)
.+....+ ... ... .....+..+|..+||.....++++.+|||||||
T Consensus 78 -~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSgGerq 156 (638)
T PRK10636 78 -QPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGGWRM 156 (638)
T ss_pred -CCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhhcCHHHHH
Confidence 1111100 000 001 123467788999999755678999999999999
Q ss_pred HHHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHcccc
Q psy208 403 RVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKYT 442 (443)
Q Consensus 403 Rl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~~ 442 (443)
||+||++|+.+|+||||||||||||+.++.+|.+.|.+|.
T Consensus 157 Rv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~~ 196 (638)
T PRK10636 157 RLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSYQ 196 (638)
T ss_pred HHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999998763
No 152
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.5e-34 Score=277.82 Aligned_cols=164 Identities=29% Similarity=0.404 Sum_probs=135.9
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-------------eEE
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-------------LKF 342 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-------------~~i 342 (443)
+|+++||+++|++.+++|+|+||+|.+|++++|+||||||||||+|+|+|+++|++|+|.+.+. ..+
T Consensus 1 ~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 80 (275)
T PRK13639 1 ILETRDLKYSYPDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTV 80 (275)
T ss_pred CEEEEEEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhhe
Confidence 4789999999964457999999999999999999999999999999999999999999987541 248
Q ss_pred EEeccCcccccccchhHHHHHHHh--CCCCC----HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCe
Q psy208 343 GYFSQHHVDQLDMNLRCVQLLEAA--FPGKP----QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNF 416 (443)
Q Consensus 343 g~~~Q~~~~~l~~~~~~~~~~~~~--~~~~~----~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~l 416 (443)
+|++|++...+. ..++.+++... ..... ...+..+++.+++. +..++++.+|||||+||++||++++.+|++
T Consensus 81 ~~v~q~~~~~~~-~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LS~Gq~qrv~laral~~~p~l 158 (275)
T PRK13639 81 GIVFQNPDDQLF-APTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGME-GFENKPPHHLSGGQKKRVAIAGILAMKPEI 158 (275)
T ss_pred EEEeeChhhhhc-cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCc-hhhcCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 999998632222 23666655321 11111 23567789999996 567899999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 417 LVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 417 LiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
|||||||++||+.++..+.+.|.++
T Consensus 159 lllDEPt~gLD~~~~~~l~~~l~~l 183 (275)
T PRK13639 159 IVLDEPTSGLDPMGASQIMKLLYDL 183 (275)
T ss_pred EEEeCCCcCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999875
No 153
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-33 Score=271.72 Aligned_cols=164 Identities=24% Similarity=0.301 Sum_probs=135.4
Q ss_pred CeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCC-----CCceEEEcCc----------
Q psy208 275 PILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISP-----TAGTRTVHRN---------- 339 (443)
Q Consensus 275 ~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p-----~~G~i~~~~~---------- 339 (443)
++|+++||+++|+ ++++|+|+||+|.+|++++|+||||||||||+++|+|+++| ++|+|.+.+.
T Consensus 2 ~~l~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 80 (250)
T PRK14247 2 NKIEIRDLKVSFG-QVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIEL 80 (250)
T ss_pred ceEEEEeeEEEEC-CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHH
Confidence 3689999999996 46799999999999999999999999999999999999974 7999987542
Q ss_pred -eEEEEeccCcccccccchhHHHHHHHh--CCC--CC----HHHHHHHHhcCCCCh---hhhhccCCCCCHHHHHHHHHH
Q psy208 340 -LKFGYFSQHHVDQLDMNLRCVQLLEAA--FPG--KP----QEEYRRQLGGFGVSG---DLALQFVGSLSGGQKSRVAFA 407 (443)
Q Consensus 340 -~~ig~~~Q~~~~~l~~~~~~~~~~~~~--~~~--~~----~~~~~~~L~~~gl~~---~~~~~~~~~LSgGekqRl~lA 407 (443)
..++|++|++. +....++.+++... ... .. ...+.+++..+++.. ...++++.+||||||||++||
T Consensus 81 ~~~i~~v~q~~~--~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~la 158 (250)
T PRK14247 81 RRRVQMVFQIPN--PIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIA 158 (250)
T ss_pred hccEEEEeccCc--cCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHH
Confidence 35899999863 33445666666421 111 11 234667888898842 346789999999999999999
Q ss_pred HHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 408 RMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 408 ~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
|+++.+|++|||||||++||+.+++.+.+.|.++
T Consensus 159 ral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~ 192 (250)
T PRK14247 159 RALAFQPEVLLADEPTANLDPENTAKIESLFLEL 192 (250)
T ss_pred HHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999875
No 154
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.1e-34 Score=278.87 Aligned_cols=160 Identities=23% Similarity=0.299 Sum_probs=134.5
Q ss_pred EEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc---------------eEE
Q psy208 278 QLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN---------------LKF 342 (443)
Q Consensus 278 ~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~---------------~~i 342 (443)
.++|+++.|+ ++++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+. ..+
T Consensus 26 ~~~~~~~~~~-~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i 104 (269)
T cd03294 26 SKEEILKKTG-QTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKI 104 (269)
T ss_pred hhhhhhhhcC-CceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcE
Confidence 5779999995 578999999999999999999999999999999999999999999987431 258
Q ss_pred EEeccCcccccccchhHHHHHHHh--CCCC----CHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCe
Q psy208 343 GYFSQHHVDQLDMNLRCVQLLEAA--FPGK----PQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNF 416 (443)
Q Consensus 343 g~~~Q~~~~~l~~~~~~~~~~~~~--~~~~----~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~l 416 (443)
+|++|++. +....++.+++... .... ....+.+++..+++. +..++++.+|||||||||+||+|++.+|++
T Consensus 105 ~~v~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~Gq~qrv~lAral~~~p~i 181 (269)
T cd03294 105 SMVFQSFA--LLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLE-GWEHKYPDELSGGMQQRVGLARALAVDPDI 181 (269)
T ss_pred EEEecCcc--cCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCH-hHhhCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 99999863 34445666665421 1111 123567789999986 567899999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 417 LVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 417 LiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
|||||||++||+.+++.+.+.|.++
T Consensus 182 llLDEPt~~LD~~~~~~l~~~l~~~ 206 (269)
T cd03294 182 LLMDEAFSALDPLIRREMQDELLRL 206 (269)
T ss_pred EEEcCCCccCCHHHHHHHHHHHHHH
Confidence 9999999999999999999998765
No 155
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.7e-33 Score=268.28 Aligned_cols=162 Identities=28% Similarity=0.430 Sum_probs=129.8
Q ss_pred EEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcC-----------ceEEEEe
Q psy208 277 LQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR-----------NLKFGYF 345 (443)
Q Consensus 277 l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~ig~~ 345 (443)
|+++|++++|++.+++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+ ...++|+
T Consensus 3 l~~~~l~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 82 (229)
T cd03254 3 IEFENVNFSYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIGVV 82 (229)
T ss_pred EEEEEEEEecCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEEEe
Confidence 78999999996445799999999999999999999999999999999999999999998754 1358999
Q ss_pred ccCcccccccchhHHHHHHHhCCCCCHHHHHHHHhcCCCCh----------hhhhccCCCCCHHHHHHHHHHHHhccCCC
Q psy208 346 SQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSG----------DLALQFVGSLSGGQKSRVAFARMCMAAPN 415 (443)
Q Consensus 346 ~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~----------~~~~~~~~~LSgGekqRl~lA~al~~~p~ 415 (443)
+|++. +.. .++.+++...........+...+..+++.. ...++++.+|||||||||+||++|+.+|+
T Consensus 83 ~q~~~--~~~-~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~ 159 (229)
T cd03254 83 LQDTF--LFS-GTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPK 159 (229)
T ss_pred cCCch--hhh-hHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 99863 222 366666643222223334444444443321 23456689999999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 416 FLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 416 lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
+|||||||++||+.+++.+.+.|.++
T Consensus 160 llllDEP~~~LD~~~~~~l~~~l~~~ 185 (229)
T cd03254 160 ILILDEATSNIDTETEKLIQEALEKL 185 (229)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999875
No 156
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.5e-33 Score=273.76 Aligned_cols=165 Identities=22% Similarity=0.298 Sum_probs=134.0
Q ss_pred CCCeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCC-----CCCceEEEcC---------
Q psy208 273 SPPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIIS-----PTAGTRTVHR--------- 338 (443)
Q Consensus 273 ~~~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~-----p~~G~i~~~~--------- 338 (443)
+.++|+++|++++|+ ++++|+++||+|.+|++++|+|+||||||||+++|+|+++ |++|+|.+.+
T Consensus 18 ~~~~l~~~~l~~~~~-~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 96 (268)
T PRK14248 18 KEHILEVKDLSIYYG-EKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNIN 96 (268)
T ss_pred CCceEEEEEEEEEeC-CceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEccccccc
Confidence 456899999999996 5679999999999999999999999999999999999864 7899997743
Q ss_pred ----ceEEEEeccCcccccccchhHHHHHHHh--CCCC-C----HHHHHHHHhcCCCCh---hhhhccCCCCCHHHHHHH
Q psy208 339 ----NLKFGYFSQHHVDQLDMNLRCVQLLEAA--FPGK-P----QEEYRRQLGGFGVSG---DLALQFVGSLSGGQKSRV 404 (443)
Q Consensus 339 ----~~~ig~~~Q~~~~~l~~~~~~~~~~~~~--~~~~-~----~~~~~~~L~~~gl~~---~~~~~~~~~LSgGekqRl 404 (443)
...++|++|++. +.. .++.+++... .... . ...+...+..+++.. ...++++.+||||||||+
T Consensus 97 ~~~~~~~i~~v~q~~~--~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl 173 (268)
T PRK14248 97 VVNLRREIGMVFQKPN--PFP-KSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRL 173 (268)
T ss_pred HHHHhccEEEEecCCc--cCc-ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHH
Confidence 125899999863 222 2666665421 1111 1 234566777887742 346789999999999999
Q ss_pred HHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 405 AFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 405 ~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
+|||+|+.+|++|||||||++||+.+++.+.+.|.++
T Consensus 174 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~ 210 (268)
T PRK14248 174 CIARTLAMKPAVLLLDEPASALDPISNAKIEELITEL 210 (268)
T ss_pred HHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999876
No 157
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=100.00 E-value=1e-33 Score=273.92 Aligned_cols=161 Identities=25% Similarity=0.370 Sum_probs=134.7
Q ss_pred EEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcC------------------
Q psy208 277 LQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR------------------ 338 (443)
Q Consensus 277 l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~------------------ 338 (443)
|+++||++.|+ ++++|+|+||+|++|++++|+||||||||||+|+|+|+++|++|+|.+.+
T Consensus 1 i~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ 79 (252)
T TIGR03005 1 VRFSDVTKRFG-ILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADE 79 (252)
T ss_pred CEEEEEEEEeC-CeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccch
Confidence 47899999996 46899999999999999999999999999999999999999999997743
Q ss_pred ------ceEEEEeccCcccccccchhHHHHHHHh---CCCC----CHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHH
Q psy208 339 ------NLKFGYFSQHHVDQLDMNLRCVQLLEAA---FPGK----PQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVA 405 (443)
Q Consensus 339 ------~~~ig~~~Q~~~~~l~~~~~~~~~~~~~---~~~~----~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~ 405 (443)
...++|++|++. +....++.+++... .... ....+.+++..+|+. +..++++.+|||||+||++
T Consensus 80 ~~~~~~~~~i~~v~q~~~--~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LS~G~~qrv~ 156 (252)
T TIGR03005 80 KHLRQMRNKIGMVFQSFN--LFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLA-DKADHMPAQLSGGQQQRVA 156 (252)
T ss_pred hHHHHHhhCeEEEecCcc--cCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCh-hHhhcChhhcCHHHHHHHH
Confidence 124899999853 44445666665421 1111 123467789999986 5678899999999999999
Q ss_pred HHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 406 FARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 406 lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
||++|+.+|++|||||||++||+.++..+.+.|.++
T Consensus 157 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~ 192 (252)
T TIGR03005 157 IARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRL 192 (252)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998764
No 158
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=100.00 E-value=6.2e-34 Score=263.96 Aligned_cols=152 Identities=30% Similarity=0.407 Sum_probs=125.0
Q ss_pred CCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-------------eEEEEeccCcccccc
Q psy208 288 PGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-------------LKFGYFSQHHVDQLD 354 (443)
Q Consensus 288 ~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-------------~~ig~~~Q~~~~~l~ 354 (443)
+++.+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+. ..++|++|++...+.
T Consensus 3 ~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 82 (190)
T TIGR01166 3 GGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLF 82 (190)
T ss_pred CccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhccc
Confidence 3567999999999999999999999999999999999999999999987531 248999998631222
Q ss_pred cchhHHHHHHHh--CCCCC----HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCCH
Q psy208 355 MNLRCVQLLEAA--FPGKP----QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDI 428 (443)
Q Consensus 355 ~~~~~~~~~~~~--~~~~~----~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD~ 428 (443)
..++.+++... ..... .+.+..++..+++. +..++++.+||||||||++|||||+.+|++|||||||++||+
T Consensus 83 -~~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~ 160 (190)
T TIGR01166 83 -AADVDQDVAFGPLNLGLSEAEVERRVREALTAVGAS-GLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDP 160 (190)
T ss_pred -cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCch-hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCH
Confidence 24666665321 11112 23467788899986 567899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHccc
Q psy208 429 ETIEALGKAINKY 441 (443)
Q Consensus 429 ~s~~~l~~~L~~~ 441 (443)
.+++.+.+.|.++
T Consensus 161 ~~~~~~~~~l~~~ 173 (190)
T TIGR01166 161 AGREQMLAILRRL 173 (190)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999875
No 159
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2e-33 Score=286.34 Aligned_cols=164 Identities=26% Similarity=0.387 Sum_probs=140.6
Q ss_pred CCeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc---------eEEEE
Q psy208 274 PPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN---------LKFGY 344 (443)
Q Consensus 274 ~~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~---------~~ig~ 344 (443)
.++|+++|++++|+ +.++|+++||+|.+|++++|+||||||||||||+|+|+++|++|+|.+++. ..+||
T Consensus 17 ~~~l~l~~v~~~~~-~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~ 95 (377)
T PRK11607 17 TPLLEIRNLTKSFD-GQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPINM 95 (377)
T ss_pred CceEEEEeEEEEEC-CEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEE
Confidence 56899999999996 467999999999999999999999999999999999999999999988642 25999
Q ss_pred eccCcccccccchhHHHHHHHhC--CCCC----HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEE
Q psy208 345 FSQHHVDQLDMNLRCVQLLEAAF--PGKP----QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLV 418 (443)
Q Consensus 345 ~~Q~~~~~l~~~~~~~~~~~~~~--~~~~----~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLi 418 (443)
++|++ .+.+..++.+++.... .... .+++.++++.+++. ...++++.+|||||||||+|||||+.+|++||
T Consensus 96 vfQ~~--~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~~~~LSgGq~QRVaLARAL~~~P~lLL 172 (377)
T PRK11607 96 MFQSY--ALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQ-EFAKRKPHQLSGGQRQRVALARSLAKRPKLLL 172 (377)
T ss_pred EeCCC--ccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99986 3566778888875321 1112 24567889999996 57789999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHccc
Q psy208 419 LDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 419 LDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
|||||++||..+++.+.+.|.++
T Consensus 173 LDEP~s~LD~~~r~~l~~~l~~l 195 (377)
T PRK11607 173 LDEPMGALDKKLRDRMQLEVVDI 195 (377)
T ss_pred EeCCcccCCHHHHHHHHHHHHHH
Confidence 99999999999999998777653
No 160
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.8e-33 Score=275.78 Aligned_cols=167 Identities=20% Similarity=0.280 Sum_probs=137.4
Q ss_pred CCCCeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCC-----CCCceEEEcCc-------
Q psy208 272 LSPPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIIS-----PTAGTRTVHRN------- 339 (443)
Q Consensus 272 ~~~~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~-----p~~G~i~~~~~------- 339 (443)
.++++|+++||++.|+ ++++|+|+||+|.+|++++|+|+||||||||+++|+|+++ |++|+|.+.+.
T Consensus 35 ~~~~~l~i~~l~~~~~-~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~ 113 (285)
T PRK14254 35 SGETVIEARDLNVFYG-DEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADV 113 (285)
T ss_pred CCCceEEEEEEEEEEC-CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEcccccc
Confidence 3567899999999996 4679999999999999999999999999999999999987 68999987431
Q ss_pred ------eEEEEeccCcccccccchhHHHHHHHh--C---CCCCHHHHHHHHhcCCCCh---hhhhccCCCCCHHHHHHHH
Q psy208 340 ------LKFGYFSQHHVDQLDMNLRCVQLLEAA--F---PGKPQEEYRRQLGGFGVSG---DLALQFVGSLSGGQKSRVA 405 (443)
Q Consensus 340 ------~~ig~~~Q~~~~~l~~~~~~~~~~~~~--~---~~~~~~~~~~~L~~~gl~~---~~~~~~~~~LSgGekqRl~ 405 (443)
..++|++|++. +... ++.+++... . +......+..++..+++.. +..++++.+|||||||||+
T Consensus 114 ~~~~~~~~i~~v~q~~~--l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~ 190 (285)
T PRK14254 114 DPVALRRRIGMVFQKPN--PFPK-SIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLC 190 (285)
T ss_pred chHhhhccEEEEecCCc--cCcC-CHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHH
Confidence 25899999863 2222 666665421 1 1112345677888888742 3567899999999999999
Q ss_pred HHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHcccc
Q psy208 406 FARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKYT 442 (443)
Q Consensus 406 lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~~ 442 (443)
||++|+.+|+||||||||++||+.+++.+.++|.++.
T Consensus 191 LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~ 227 (285)
T PRK14254 191 IARAIAPDPEVILMDEPASALDPVATSKIEDLIEELA 227 (285)
T ss_pred HHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999998763
No 161
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=100.00 E-value=2.8e-33 Score=271.32 Aligned_cols=164 Identities=19% Similarity=0.298 Sum_probs=134.3
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCC----CCceEEEcCc---------eEE
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISP----TAGTRTVHRN---------LKF 342 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p----~~G~i~~~~~---------~~i 342 (443)
+|+++|++++| + +++|+|+||+|.+|++++|+|+||||||||+++|+|+++| ++|+|.+.+. ..+
T Consensus 4 ~l~~~~l~~~~-~-~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~i 81 (254)
T PRK10418 4 QIELRNIALQA-A-QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKI 81 (254)
T ss_pred EEEEeCeEEEe-c-cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccceE
Confidence 68999999999 3 5799999999999999999999999999999999999999 9999987542 359
Q ss_pred EEeccCcccccccchhHHHHHHH---hC-CCCCHHHHHHHHhcCCCChh--hhhccCCCCCHHHHHHHHHHHHhccCCCe
Q psy208 343 GYFSQHHVDQLDMNLRCVQLLEA---AF-PGKPQEEYRRQLGGFGVSGD--LALQFVGSLSGGQKSRVAFARMCMAAPNF 416 (443)
Q Consensus 343 g~~~Q~~~~~l~~~~~~~~~~~~---~~-~~~~~~~~~~~L~~~gl~~~--~~~~~~~~LSgGekqRl~lA~al~~~p~l 416 (443)
+|++|++...+.+..++.+.+.. .. .....+.+.+++..+++... ..++++.+|||||+|||+|||||+.+|++
T Consensus 82 ~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~l 161 (254)
T PRK10418 82 ATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAPF 161 (254)
T ss_pred EEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhcCCCE
Confidence 99999863223333343333211 11 11234567888999998642 46789999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 417 LVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 417 LiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
|||||||++||+.+++.+.+.|.++
T Consensus 162 LlLDEPt~~LD~~~~~~l~~~L~~~ 186 (254)
T PRK10418 162 IIADEPTTDLDVVAQARILDLLESI 186 (254)
T ss_pred EEEeCCCcccCHHHHHHHHHHHHHH
Confidence 9999999999999999999998765
No 162
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=1.5e-33 Score=285.69 Aligned_cols=162 Identities=25% Similarity=0.408 Sum_probs=139.6
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCC--ceEEEcCc---------eEEEE
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTA--GTRTVHRN---------LKFGY 344 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~--G~i~~~~~---------~~ig~ 344 (443)
.|+++||+++|+ +..+|+|+||+|.+|++++|+|||||||||||++|+|+++|++ |+|.+.+. ..+||
T Consensus 5 ~l~~~~l~~~~~-~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ig~ 83 (362)
T TIGR03258 5 GIRIDHLRVAYG-ANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGLAL 83 (362)
T ss_pred EEEEEEEEEEEC-CeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCCEEE
Confidence 489999999996 4679999999999999999999999999999999999999999 99988642 35999
Q ss_pred eccCcccccccchhHHHHHHHhC--CCCC----HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEE
Q psy208 345 FSQHHVDQLDMNLRCVQLLEAAF--PGKP----QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLV 418 (443)
Q Consensus 345 ~~Q~~~~~l~~~~~~~~~~~~~~--~~~~----~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLi 418 (443)
++|++. +.+..++.+++.... .... ...+.++++.+++. +..++++.+|||||||||+|||||+.+|++||
T Consensus 84 vfQ~~~--l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~-~~~~~~~~~LSgGq~QRvaLARAL~~~P~llL 160 (362)
T TIGR03258 84 LFQNYA--LFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLG-DAAAHLPAQLSGGMQQRIAIARAIAIEPDVLL 160 (362)
T ss_pred EECCcc--cCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCC-chhhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 999863 556678887775321 1112 24577889999996 57889999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHccc
Q psy208 419 LDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 419 LDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
|||||++||+.+++.|.+.|.++
T Consensus 161 LDEP~s~LD~~~r~~l~~~l~~l 183 (362)
T TIGR03258 161 LDEPLSALDANIRANMREEIAAL 183 (362)
T ss_pred EcCccccCCHHHHHHHHHHHHHH
Confidence 99999999999999999988764
No 163
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-33 Score=270.87 Aligned_cols=163 Identities=25% Similarity=0.348 Sum_probs=133.8
Q ss_pred CeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc------------eEE
Q psy208 275 PILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN------------LKF 342 (443)
Q Consensus 275 ~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------------~~i 342 (443)
++|+++|++++|+ ++++|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+. ..+
T Consensus 4 ~~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 82 (237)
T PRK11614 4 VMLSFDKVSAHYG-KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAV 82 (237)
T ss_pred cEEEEEeEEEeeC-CceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCE
Confidence 5799999999996 568999999999999999999999999999999999999999999987531 248
Q ss_pred EEeccCcccccccchhHHHHHHHh--CCCC--CHHHHHHHHhcC-CCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeE
Q psy208 343 GYFSQHHVDQLDMNLRCVQLLEAA--FPGK--PQEEYRRQLGGF-GVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFL 417 (443)
Q Consensus 343 g~~~Q~~~~~l~~~~~~~~~~~~~--~~~~--~~~~~~~~L~~~-gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lL 417 (443)
+|++|++. +....++.+++... .... ....+..+++.+ ++. +..++++.+||||||||++||++++.+|++|
T Consensus 83 ~~~~q~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~-~~~~~~~~~LS~G~~qrl~la~al~~~p~il 159 (237)
T PRK11614 83 AIVPEGRR--VFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLH-ERRIQRAGTMSGGEQQMLAIGRALMSQPRLL 159 (237)
T ss_pred EEeccCcc--cCCCCcHHHHHHHhhhccChhHHHHHHHHHHHHHHHHH-HHHhCchhhCCHHHHHHHHHHHHHHhCCCEE
Confidence 99999853 33445666666431 1111 122345566666 353 4567889999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHccc
Q psy208 418 VLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 418 iLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
||||||++||+.+++.+.+.|.++
T Consensus 160 llDEPt~~LD~~~~~~l~~~l~~~ 183 (237)
T PRK11614 160 LLDEPSLGLAPIIIQQIFDTIEQL 183 (237)
T ss_pred EEcCccccCCHHHHHHHHHHHHHH
Confidence 999999999999999999998765
No 164
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-33 Score=283.57 Aligned_cols=167 Identities=22% Similarity=0.298 Sum_probs=137.7
Q ss_pred CeEEEeeeEEEeCC---CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCC----CCCceEEEcCc--------
Q psy208 275 PILQLSEVNFEYVP---GKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIIS----PTAGTRTVHRN-------- 339 (443)
Q Consensus 275 ~~l~~~~l~~~y~~---~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~----p~~G~i~~~~~-------- 339 (443)
++|+++||+++|+. ...+|+|+||+|.+|++++|+|+||||||||+++|+|+++ |++|+|.+.+.
T Consensus 2 ~~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~ 81 (330)
T PRK15093 2 PLLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPR 81 (330)
T ss_pred CeEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHH
Confidence 47999999999942 3469999999999999999999999999999999999997 58999987531
Q ss_pred -------eEEEEeccCcccccccchhHHHHHHHh-----CCC-------CCHHHHHHHHhcCCCCh--hhhhccCCCCCH
Q psy208 340 -------LKFGYFSQHHVDQLDMNLRCVQLLEAA-----FPG-------KPQEEYRRQLGGFGVSG--DLALQFVGSLSG 398 (443)
Q Consensus 340 -------~~ig~~~Q~~~~~l~~~~~~~~~~~~~-----~~~-------~~~~~~~~~L~~~gl~~--~~~~~~~~~LSg 398 (443)
..++|++|++...+++..++.+.+... ... .....+.++|..+|+.. +..++++.+|||
T Consensus 82 ~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSg 161 (330)
T PRK15093 82 ERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTE 161 (330)
T ss_pred HHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCH
Confidence 259999999754455555655554321 100 11245778999999963 346789999999
Q ss_pred HHHHHHHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 399 GQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 399 GekqRl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
||+|||+||+||+.+|++|||||||++||+.++..+.+.|+++
T Consensus 162 G~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l 204 (330)
T PRK15093 162 GECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRL 204 (330)
T ss_pred HHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999864
No 165
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=100.00 E-value=5e-33 Score=296.34 Aligned_cols=163 Identities=31% Similarity=0.470 Sum_probs=139.3
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc----------eEEEEe
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN----------LKFGYF 345 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~----------~~ig~~ 345 (443)
.|+++||+|+|++++++|+|+||+|++|++++|+||||||||||+|+|+|+++|++|+|.+++. ..++|+
T Consensus 334 ~I~~~~vsf~Y~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~~~~lr~~i~~V 413 (529)
T TIGR02868 334 TLELRDLSFGYPGSPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQDELRRRISVF 413 (529)
T ss_pred eEEEEEEEEecCCCCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhHHHHHHhheEEE
Confidence 4999999999976567999999999999999999999999999999999999999999998752 369999
Q ss_pred ccCcccccccchhHHHHHHHhCCCCCHHHHHHHHhcCCCChhh------hhc----cCCCCCHHHHHHHHHHHHhccCCC
Q psy208 346 SQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDL------ALQ----FVGSLSGGQKSRVAFARMCMAAPN 415 (443)
Q Consensus 346 ~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~------~~~----~~~~LSgGekqRl~lA~al~~~p~ 415 (443)
+|++. + .+.|+.+++....+..+++++.+.+...++.... .+. ....||||||||++||||++++|+
T Consensus 414 ~Q~~~--l-F~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~ 490 (529)
T TIGR02868 414 AQDAH--L-FDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAP 490 (529)
T ss_pred ccCcc--c-ccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCC
Confidence 99974 2 2457888887555556778888888888774311 122 235799999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 416 FLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 416 lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
+|||||||++||.++.+.+.+.|.+.
T Consensus 491 iliLDE~TSaLD~~te~~I~~~l~~~ 516 (529)
T TIGR02868 491 ILLLDEPTEHLDAGTESELLEDLLAA 516 (529)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHh
Confidence 99999999999999999999998764
No 166
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-33 Score=277.28 Aligned_cols=165 Identities=27% Similarity=0.365 Sum_probs=136.1
Q ss_pred CeEEEeeeEEEeCC-----CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcC-----------
Q psy208 275 PILQLSEVNFEYVP-----GKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR----------- 338 (443)
Q Consensus 275 ~~l~~~~l~~~y~~-----~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~----------- 338 (443)
++|+++|++++|++ .+++|+|+||+|.+|++++|+|+||||||||+++|+|+++|++|+|.+++
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~ 82 (280)
T PRK13633 3 EMIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWD 82 (280)
T ss_pred ceEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHH
Confidence 57999999999963 24699999999999999999999999999999999999999999998753
Q ss_pred -ceEEEEeccCcccccccchhHHHHHHHh--CCCCC----HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhc
Q psy208 339 -NLKFGYFSQHHVDQLDMNLRCVQLLEAA--FPGKP----QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCM 411 (443)
Q Consensus 339 -~~~ig~~~Q~~~~~l~~~~~~~~~~~~~--~~~~~----~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~ 411 (443)
...+||++|++...+. ..++.+++... ..... ...+..++..+|+. ...++++.+||||||||++||++|+
T Consensus 83 ~~~~i~~v~q~~~~~~~-~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~-~~~~~~~~~LS~G~~qrv~laral~ 160 (280)
T PRK13633 83 IRNKAGMVFQNPDNQIV-ATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMY-EYRRHAPHLLSGGQKQRVAIAGILA 160 (280)
T ss_pred HhhheEEEecChhhhhc-cccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCH-hHhhCCcccCCHHHHHHHHHHHHHH
Confidence 1248999998632232 23444444311 11111 34567889999996 5778999999999999999999999
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 412 AAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 412 ~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
.+|++|||||||++||+.++..|.+.|.++
T Consensus 161 ~~p~llllDEPt~gLD~~~~~~l~~~l~~l 190 (280)
T PRK13633 161 MRPECIIFDEPTAMLDPSGRREVVNTIKEL 190 (280)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999865
No 167
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.8e-33 Score=281.99 Aligned_cols=166 Identities=19% Similarity=0.275 Sum_probs=136.7
Q ss_pred eEEEeeeEEEeCCC---CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCC----CCCceEEEcCc---------
Q psy208 276 ILQLSEVNFEYVPG---KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIIS----PTAGTRTVHRN--------- 339 (443)
Q Consensus 276 ~l~~~~l~~~y~~~---~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~----p~~G~i~~~~~--------- 339 (443)
+|+++||++.|+.. ..+|+||||+|.+|+++||+|+||||||||+++|+|+++ |++|+|.+.+.
T Consensus 3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~ 82 (326)
T PRK11022 3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKE 82 (326)
T ss_pred eEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHH
Confidence 68999999999642 369999999999999999999999999999999999997 48999987542
Q ss_pred ------eEEEEeccCcccccccchhHHHHHHH---hCCCC----CHHHHHHHHhcCCCCh--hhhhccCCCCCHHHHHHH
Q psy208 340 ------LKFGYFSQHHVDQLDMNLRCVQLLEA---AFPGK----PQEEYRRQLGGFGVSG--DLALQFVGSLSGGQKSRV 404 (443)
Q Consensus 340 ------~~ig~~~Q~~~~~l~~~~~~~~~~~~---~~~~~----~~~~~~~~L~~~gl~~--~~~~~~~~~LSgGekqRl 404 (443)
..++|++|++...+++..++.+.+.. ..... ..+.+.++|..+|+.. ...++++++|||||+|||
T Consensus 83 ~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv 162 (326)
T PRK11022 83 RRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRV 162 (326)
T ss_pred HHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHH
Confidence 14999999975445655554433321 11111 2345778999999963 356789999999999999
Q ss_pred HHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 405 AFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 405 ~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
+||+||+.+|++||+||||++||+.++..+.+.|.++
T Consensus 163 ~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l 199 (326)
T PRK11022 163 MIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLEL 199 (326)
T ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998765
No 168
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=100.00 E-value=1.3e-33 Score=280.52 Aligned_cols=155 Identities=30% Similarity=0.384 Sum_probs=130.0
Q ss_pred EEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc----------eEEEEeccCccccc
Q psy208 284 FEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN----------LKFGYFSQHHVDQL 353 (443)
Q Consensus 284 ~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~----------~~ig~~~Q~~~~~l 353 (443)
++|+ ++++|+|+||+|.+|+++||+||||||||||+|+|+|+++|++|+|.+.+. ..+||++|++. +
T Consensus 1 k~y~-~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~--~ 77 (302)
T TIGR01188 1 KVYG-DFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYAS--V 77 (302)
T ss_pred CeeC-CeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCC--C
Confidence 3574 567999999999999999999999999999999999999999999988542 25899999853 4
Q ss_pred ccchhHHHHHHH--hCCCCC----HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCC
Q psy208 354 DMNLRCVQLLEA--AFPGKP----QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD 427 (443)
Q Consensus 354 ~~~~~~~~~~~~--~~~~~~----~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD 427 (443)
....++.+++.. ...+.. ...+..++..+++. ...++++.+|||||||||+||+||+.+|++|||||||+|||
T Consensus 78 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD 156 (302)
T TIGR01188 78 DEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELG-EAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLD 156 (302)
T ss_pred CCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh-hHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCC
Confidence 455666666542 111211 23577889999996 56789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcccc
Q psy208 428 IETIEALGKAINKYT 442 (443)
Q Consensus 428 ~~s~~~l~~~L~~~~ 442 (443)
+.+++.+.+.|.++.
T Consensus 157 ~~~~~~l~~~l~~~~ 171 (302)
T TIGR01188 157 PRTRRAIWDYIRALK 171 (302)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998763
No 169
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=100.00 E-value=2.3e-33 Score=264.80 Aligned_cols=159 Identities=30% Similarity=0.426 Sum_probs=133.5
Q ss_pred EEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc---------eEEEEecc
Q psy208 277 LQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN---------LKFGYFSQ 347 (443)
Q Consensus 277 l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~---------~~ig~~~Q 347 (443)
++++||+++|+ . .+.|+||+|.+|++++|+||||||||||+|+|+|+++|++|+|.+.+. ..++|++|
T Consensus 1 ~~~~~l~~~~~-~--~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q 77 (213)
T TIGR01277 1 LALDKVRYEYE-H--LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQ 77 (213)
T ss_pred CeEEeeeEEeC-C--cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCChhccceEEEec
Confidence 47899999995 2 578999999999999999999999999999999999999999987542 34899999
Q ss_pred CcccccccchhHHHHHHHhC-C--C---CCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeC
Q psy208 348 HHVDQLDMNLRCVQLLEAAF-P--G---KPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDE 421 (443)
Q Consensus 348 ~~~~~l~~~~~~~~~~~~~~-~--~---~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDE 421 (443)
++. +....++.+++.... . . .....+.+++..+++. +..++++.+|||||+||++||++++.+|++|||||
T Consensus 78 ~~~--~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrl~laral~~~p~llllDE 154 (213)
T TIGR01277 78 ENN--LFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIA-DYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDE 154 (213)
T ss_pred cCc--cCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcH-HHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 863 444556666654211 1 1 1234567789999995 56789999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHccc
Q psy208 422 PTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 422 PTn~LD~~s~~~l~~~L~~~ 441 (443)
||++||+.+++.+.+.|.++
T Consensus 155 Pt~~LD~~~~~~~~~~l~~~ 174 (213)
T TIGR01277 155 PFSALDPLLREEMLALVKQL 174 (213)
T ss_pred CCccCCHHHHHHHHHHHHHH
Confidence 99999999999999998765
No 170
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=3.1e-33 Score=260.53 Aligned_cols=160 Identities=24% Similarity=0.329 Sum_probs=132.7
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-------eEEEEeccC
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-------LKFGYFSQH 348 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-------~~ig~~~Q~ 348 (443)
+|+++|++++|+ ++.+++ +||+|++|++++|+|+||||||||+++|+|+++|++|+|.+.+. ..++|++|+
T Consensus 1 ~l~~~~l~~~~~-~~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 78 (195)
T PRK13541 1 MLSLHQLQFNIE-QKNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTYIGHN 78 (195)
T ss_pred CeEEEEeeEEEC-CcEEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhhhhhEEeccCC
Confidence 478999999995 455665 99999999999999999999999999999999999999988652 247899987
Q ss_pred cccccccchhHHHHHHHhCCC-CCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCC
Q psy208 349 HVDQLDMNLRCVQLLEAAFPG-KPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD 427 (443)
Q Consensus 349 ~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD 427 (443)
+. +....++.+++...... .....+..++..+++. +..++++.+||||||||++||++++.+|++|||||||++||
T Consensus 79 ~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~~~LD 155 (195)
T PRK13541 79 LG--LKLEMTVFENLKFWSEIYNSAETLYAAIHYFKLH-DLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLS 155 (195)
T ss_pred cC--CCccCCHHHHHHHHHHhcccHHHHHHHHHHcCCH-hhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 52 33455666665432111 1244667788889986 56788999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcc
Q psy208 428 IETIEALGKAINK 440 (443)
Q Consensus 428 ~~s~~~l~~~L~~ 440 (443)
+.+++.+.+.|..
T Consensus 156 ~~~~~~l~~~l~~ 168 (195)
T PRK13541 156 KENRDLLNNLIVM 168 (195)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998864
No 171
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.1e-33 Score=268.54 Aligned_cols=160 Identities=30% Similarity=0.494 Sum_probs=134.1
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc---------eEEEEec
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN---------LKFGYFS 346 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~---------~~ig~~~ 346 (443)
+|+++||+++|+ +.. .++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+. ..++|++
T Consensus 1 ~l~~~~l~~~~~-~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~ 77 (232)
T PRK10771 1 MLKLTDITWLYH-HLP--MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLF 77 (232)
T ss_pred CeEEEEEEEEEC-Ccc--ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccEEEEe
Confidence 478999999996 333 4999999999999999999999999999999999999999987542 3589999
Q ss_pred cCcccccccchhHHHHHHHhC-CC-----CCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEe
Q psy208 347 QHHVDQLDMNLRCVQLLEAAF-PG-----KPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLD 420 (443)
Q Consensus 347 Q~~~~~l~~~~~~~~~~~~~~-~~-----~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLD 420 (443)
|++. +....++.+++.... .. .....+..++..+|+. ...++++..||||||||++||++++.+|++||||
T Consensus 78 q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~laral~~~p~lllLD 154 (232)
T PRK10771 78 QENN--LFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIE-DLLARLPGQLSGGQRQRVALARCLVREQPILLLD 154 (232)
T ss_pred cccc--cccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcH-HHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 9853 444557777664211 11 1134577889999986 5788999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHccc
Q psy208 421 EPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 421 EPTn~LD~~s~~~l~~~L~~~ 441 (443)
|||++||+.+++.+.+.|.++
T Consensus 155 EP~~gLD~~~~~~~~~~l~~~ 175 (232)
T PRK10771 155 EPFSALDPALRQEMLTLVSQV 175 (232)
T ss_pred CCcccCCHHHHHHHHHHHHHH
Confidence 999999999999999988764
No 172
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.6e-33 Score=272.11 Aligned_cols=165 Identities=22% Similarity=0.245 Sum_probs=134.9
Q ss_pred CCCeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCC-----CCCceEEEcCc--------
Q psy208 273 SPPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIIS-----PTAGTRTVHRN-------- 339 (443)
Q Consensus 273 ~~~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~-----p~~G~i~~~~~-------- 339 (443)
+.++|+++||+++|+ ++.+|+|+||+|.+|++++|+||||||||||+++|+|+++ |++|+|.+.+.
T Consensus 10 ~~~~l~i~nl~~~~~-~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~ 88 (269)
T PRK14259 10 KNIIISLQNVTISYG-TFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVD 88 (269)
T ss_pred CCceEEEEeEEEEEC-CEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCC
Confidence 346899999999996 4679999999999999999999999999999999999987 68999987531
Q ss_pred -----eEEEEeccCcccccccchhHHHHHHHhC--CCC---CHHHHHHHHhcCCCC---hhhhhccCCCCCHHHHHHHHH
Q psy208 340 -----LKFGYFSQHHVDQLDMNLRCVQLLEAAF--PGK---PQEEYRRQLGGFGVS---GDLALQFVGSLSGGQKSRVAF 406 (443)
Q Consensus 340 -----~~ig~~~Q~~~~~l~~~~~~~~~~~~~~--~~~---~~~~~~~~L~~~gl~---~~~~~~~~~~LSgGekqRl~l 406 (443)
..++|++|++. +.. .++.+++.... ... ..+.+..++..+++. ....++++.+|||||||||+|
T Consensus 89 ~~~~~~~i~~v~q~~~--l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~l 165 (269)
T PRK14259 89 PVEVRRRIGMVFQQPN--PFP-KSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCI 165 (269)
T ss_pred HHHHhhceEEEccCCc--cch-hhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHH
Confidence 24899999863 233 36666664211 111 123456677777763 235678899999999999999
Q ss_pred HHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 407 ARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 407 A~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
|++|+.+|++|||||||++||+.+++.+.+.|.++
T Consensus 166 aral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~ 200 (269)
T PRK14259 166 ARTIAIEPEVILMDEPCSALDPISTLKIEETMHEL 200 (269)
T ss_pred HHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999875
No 173
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.4e-33 Score=270.59 Aligned_cols=165 Identities=24% Similarity=0.302 Sum_probs=134.8
Q ss_pred CCeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCC-----CCceEEEcC----------
Q psy208 274 PPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISP-----TAGTRTVHR---------- 338 (443)
Q Consensus 274 ~~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p-----~~G~i~~~~---------- 338 (443)
.++|+++|++++|+ ++++|+|+||+|.+|++++|+|+||||||||+|+|+|+++| ++|+|.+.+
T Consensus 5 ~~~l~~~~l~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 83 (254)
T PRK14273 5 EAIIETENLNLFYT-DFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDI 83 (254)
T ss_pred CceEEEeeeEEEeC-CceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccH
Confidence 35899999999996 46799999999999999999999999999999999999987 489998743
Q ss_pred ---ceEEEEeccCcccccccchhHHHHHHHh--CCC-CC----HHHHHHHHhcCCCC---hhhhhccCCCCCHHHHHHHH
Q psy208 339 ---NLKFGYFSQHHVDQLDMNLRCVQLLEAA--FPG-KP----QEEYRRQLGGFGVS---GDLALQFVGSLSGGQKSRVA 405 (443)
Q Consensus 339 ---~~~ig~~~Q~~~~~l~~~~~~~~~~~~~--~~~-~~----~~~~~~~L~~~gl~---~~~~~~~~~~LSgGekqRl~ 405 (443)
...++|++|++.. + ..++.+++... ... .. ...+...+..+++. .+..++++.+||||||||++
T Consensus 84 ~~~~~~i~~v~q~~~~-~--~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~ 160 (254)
T PRK14273 84 LELRRKIGMVFQTPNP-F--LMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLC 160 (254)
T ss_pred HHHhhceEEEeecccc-c--cCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHH
Confidence 1248999998632 2 25666665421 111 11 23456777888763 24567899999999999999
Q ss_pred HHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHcccc
Q psy208 406 FARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKYT 442 (443)
Q Consensus 406 lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~~ 442 (443)
|||+|+.+|++|||||||++||+.++..+.+.|.++.
T Consensus 161 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~ 197 (254)
T PRK14273 161 IARTLAIEPNVILMDEPTSALDPISTGKIEELIINLK 197 (254)
T ss_pred HHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999998763
No 174
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=100.00 E-value=3.6e-33 Score=267.56 Aligned_cols=162 Identities=31% Similarity=0.458 Sum_probs=128.6
Q ss_pred EEEeeeEEEeCC-CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-----------eEEEE
Q psy208 277 LQLSEVNFEYVP-GKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-----------LKFGY 344 (443)
Q Consensus 277 l~~~~l~~~y~~-~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~ig~ 344 (443)
++++|+++.|++ ++++|+|+||+|.+|++++|+|+||||||||+++|+|+++|++|+|.+.+. ..++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (237)
T cd03252 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGV 80 (237)
T ss_pred CEEEEEEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEE
Confidence 478999999963 357999999999999999999999999999999999999999999988642 25899
Q ss_pred eccCcccccccchhHHHHHHHhCCCCCHHHHHHH---------HhcC--CCChhhhhccCCCCCHHHHHHHHHHHHhccC
Q psy208 345 FSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQ---------LGGF--GVSGDLALQFVGSLSGGQKSRVAFARMCMAA 413 (443)
Q Consensus 345 ~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------L~~~--gl~~~~~~~~~~~LSgGekqRl~lA~al~~~ 413 (443)
++|++. +. ..++.+++...........+... +..+ ++. ...++++.+|||||||||+|||+++.+
T Consensus 81 ~~q~~~--~~-~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~-~~~~~~~~~LSgG~~qrv~laral~~~ 156 (237)
T cd03252 81 VLQENV--LF-NRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYD-TIVGEQGAGLSGGQRQRIAIARALIHN 156 (237)
T ss_pred EcCCch--hc-cchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCccccc-chhhcCCCcCCHHHHHHHHHHHHHhhC
Confidence 999863 22 34667766432222222233222 2333 332 234678899999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHcccc
Q psy208 414 PNFLVLDEPTNHLDIETIEALGKAINKYT 442 (443)
Q Consensus 414 p~lLiLDEPTn~LD~~s~~~l~~~L~~~~ 442 (443)
|++|||||||++||+.+++.+.+.|.++.
T Consensus 157 p~llllDEP~~~LD~~~~~~l~~~l~~~~ 185 (237)
T cd03252 157 PRILIFDEATSALDYESEHAIMRNMHDIC 185 (237)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999999998753
No 175
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=3.5e-33 Score=302.22 Aligned_cols=164 Identities=28% Similarity=0.429 Sum_probs=140.0
Q ss_pred eEEEeeeEEEeCCC-CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcC-----------ceEEE
Q psy208 276 ILQLSEVNFEYVPG-KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR-----------NLKFG 343 (443)
Q Consensus 276 ~l~~~~l~~~y~~~-~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~ig 343 (443)
-++++||+|+|+.+ .++|+|+||+|++||++||+|+||||||||+|+|+|+++|++|+|.+++ +..+|
T Consensus 471 ~I~~~nvsf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig 550 (709)
T COG2274 471 EIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVG 550 (709)
T ss_pred eEEEEEEEEEeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhhee
Confidence 58999999999765 4699999999999999999999999999999999999999999999874 24699
Q ss_pred EeccCcccccccchhHHHHHHHhCCCCCHHHHHHHHhcCCCChhhh----------hccCCCCCHHHHHHHHHHHHhccC
Q psy208 344 YFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLA----------LQFVGSLSGGQKSRVAFARMCMAA 413 (443)
Q Consensus 344 ~~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~----------~~~~~~LSgGekqRl~lA~al~~~ 413 (443)
|++|++. -...++.+++....+..+.+++.+.+...|...... ......||||||||++||||++++
T Consensus 551 ~V~Q~~~---Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~ 627 (709)
T COG2274 551 YVLQDPF---LFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSK 627 (709)
T ss_pred EEcccch---hhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccC
Confidence 9999863 235688888887777777777777766666543222 234568999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHcccc
Q psy208 414 PNFLVLDEPTNHLDIETIEALGKAINKYT 442 (443)
Q Consensus 414 p~lLiLDEPTn~LD~~s~~~l~~~L~~~~ 442 (443)
|+|||||||||+||+++.+.+.+.|.++.
T Consensus 628 P~ILlLDEaTSaLD~~sE~~I~~~L~~~~ 656 (709)
T COG2274 628 PKILLLDEATSALDPETEAIILQNLLQIL 656 (709)
T ss_pred CCEEEEeCcccccCHhHHHHHHHHHHHHh
Confidence 99999999999999999999999987653
No 176
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=100.00 E-value=2.2e-33 Score=272.38 Aligned_cols=161 Identities=30% Similarity=0.418 Sum_probs=135.7
Q ss_pred EEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-----------eEEEEe
Q psy208 277 LQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-----------LKFGYF 345 (443)
Q Consensus 277 l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~ig~~ 345 (443)
|+++|+++.|+ ++++|+|+||+|.+|++++|+|+||||||||+++|+|+++|++|+|.+.+. ..++|+
T Consensus 2 l~~~~l~~~~~-~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (256)
T TIGR03873 2 LRLSRVSWSAG-GRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALV 80 (256)
T ss_pred ceEEeEEEEEC-CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEEe
Confidence 68999999996 568999999999999999999999999999999999999999999988541 248999
Q ss_pred ccCcccccccchhHHHHHHHhC-------C-C--CCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCC
Q psy208 346 SQHHVDQLDMNLRCVQLLEAAF-------P-G--KPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPN 415 (443)
Q Consensus 346 ~Q~~~~~l~~~~~~~~~~~~~~-------~-~--~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~ 415 (443)
+|++. +....++.+++.... . . ...+.+.+++..+++. +..++++..|||||+||++||++++.+|+
T Consensus 81 ~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrl~la~al~~~p~ 157 (256)
T TIGR03873 81 EQDSD--TAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELS-HLADRDMSTLSGGERQRVHVARALAQEPK 157 (256)
T ss_pred cccCc--cCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcH-hhhcCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 99863 333456666653211 0 0 1123567889999985 56789999999999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 416 FLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 416 lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
+|||||||++||+.+++.+.+.|.++
T Consensus 158 llllDEPt~~LD~~~~~~l~~~l~~~ 183 (256)
T TIGR03873 158 LLLLDEPTNHLDVRAQLETLALVREL 183 (256)
T ss_pred EEEEcCccccCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999865
No 177
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.8e-33 Score=272.42 Aligned_cols=164 Identities=22% Similarity=0.269 Sum_probs=134.6
Q ss_pred CCeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCC-----CCceEEEcC----------
Q psy208 274 PPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISP-----TAGTRTVHR---------- 338 (443)
Q Consensus 274 ~~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p-----~~G~i~~~~---------- 338 (443)
.++|+++||++.|+ ++++|+|+||+|++|++++|+|+||||||||+++|+|+++| ++|+|.+.+
T Consensus 17 ~~~l~~~nl~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~ 95 (267)
T PRK14235 17 EIKMRARDVSVFYG-EKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDV 95 (267)
T ss_pred CceEEEEeEEEEEC-CEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccch
Confidence 45799999999996 56799999999999999999999999999999999999975 899998753
Q ss_pred ---ceEEEEeccCcccccccchhHHHHHHHh--CCCC------CHHHHHHHHhcCCCCh---hhhhccCCCCCHHHHHHH
Q psy208 339 ---NLKFGYFSQHHVDQLDMNLRCVQLLEAA--FPGK------PQEEYRRQLGGFGVSG---DLALQFVGSLSGGQKSRV 404 (443)
Q Consensus 339 ---~~~ig~~~Q~~~~~l~~~~~~~~~~~~~--~~~~------~~~~~~~~L~~~gl~~---~~~~~~~~~LSgGekqRl 404 (443)
...++|++|++. +.. .++.+++... .... ....+..++..+++.. ...++++.+||||||||+
T Consensus 96 ~~~~~~i~~v~q~~~--~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv 172 (267)
T PRK14235 96 VELRARVGMVFQKPN--PFP-KSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRL 172 (267)
T ss_pred HHHhhceEEEecCCC--CCC-CcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHH
Confidence 124899999863 222 2666665421 1111 1234577888899853 245788999999999999
Q ss_pred HHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 405 AFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 405 ~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
+|||+|+.+|++|||||||++||+.++..+.+.|.++
T Consensus 173 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l 209 (267)
T PRK14235 173 CIARAIAVSPEVILMDEPCSALDPIATAKVEELIDEL 209 (267)
T ss_pred HHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999865
No 178
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.7e-33 Score=273.73 Aligned_cols=166 Identities=26% Similarity=0.326 Sum_probs=135.1
Q ss_pred CCeEEEeeeEEEeCCC-CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-----------eE
Q psy208 274 PPILQLSEVNFEYVPG-KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-----------LK 341 (443)
Q Consensus 274 ~~~l~~~~l~~~y~~~-~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~ 341 (443)
.++|+++|++++|++. +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+.+. ..
T Consensus 5 ~~~l~i~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 84 (269)
T PRK13648 5 NSIIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKH 84 (269)
T ss_pred CceEEEEEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhh
Confidence 3579999999999643 46999999999999999999999999999999999999999999988542 24
Q ss_pred EEEeccCcccccccchhHHHHHHHh--CCCCC----HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCC
Q psy208 342 FGYFSQHHVDQLDMNLRCVQLLEAA--FPGKP----QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPN 415 (443)
Q Consensus 342 ig~~~Q~~~~~l~~~~~~~~~~~~~--~~~~~----~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~ 415 (443)
++|++|++... ....++.+++... ..... ...+..++..+++. +..++++..||||||||++||+|++.+|+
T Consensus 85 i~~v~q~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrl~laral~~~p~ 162 (269)
T PRK13648 85 IGIVFQNPDNQ-FVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDML-ERADYEPNALSGGQKQRVAIAGVLALNPS 162 (269)
T ss_pred eeEEEeChHHh-cccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCc-hhhhCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 89999986312 2223434433211 11111 23466788999986 56788999999999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 416 FLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 416 lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
+|||||||++||+.+++.+.+.|.++
T Consensus 163 lllLDEPt~~LD~~~~~~l~~~L~~~ 188 (269)
T PRK13648 163 VIILDEATSMLDPDARQNLLDLVRKV 188 (269)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999765
No 179
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.7e-33 Score=270.64 Aligned_cols=164 Identities=26% Similarity=0.310 Sum_probs=134.6
Q ss_pred CCeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCC-----CCCceEEEcC----------
Q psy208 274 PPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIIS-----PTAGTRTVHR---------- 338 (443)
Q Consensus 274 ~~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~-----p~~G~i~~~~---------- 338 (443)
..+|+++|+++.|+ ++++|+|+||+|.+|++++|+||||||||||+++|+|+++ |++|+|.+++
T Consensus 11 ~~~l~~~~l~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~ 89 (260)
T PRK10744 11 PSKIQVRNLNFYYG-KFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDI 89 (260)
T ss_pred CceEEEEEEEEEeC-CeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccch
Confidence 45799999999996 4679999999999999999999999999999999999986 5899997753
Q ss_pred ---ceEEEEeccCcccccccchhHHHHHHHh---CCCCC----HHHHHHHHhcCCCCh---hhhhccCCCCCHHHHHHHH
Q psy208 339 ---NLKFGYFSQHHVDQLDMNLRCVQLLEAA---FPGKP----QEEYRRQLGGFGVSG---DLALQFVGSLSGGQKSRVA 405 (443)
Q Consensus 339 ---~~~ig~~~Q~~~~~l~~~~~~~~~~~~~---~~~~~----~~~~~~~L~~~gl~~---~~~~~~~~~LSgGekqRl~ 405 (443)
...++|++|++. +.. .++.+++... ..... .+.+.+++..+++.. ...++++.+|||||+||++
T Consensus 90 ~~~~~~i~~~~q~~~--~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~ 166 (260)
T PRK10744 90 ALLRAKVGMVFQKPT--PFP-MSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLC 166 (260)
T ss_pred HHHhcceEEEecCCc--cCc-CcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHH
Confidence 125899999863 222 4666665421 11111 234667888888742 3567889999999999999
Q ss_pred HHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 406 FARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 406 lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
||++++.+|++|||||||++||+.+++.+.+.|.++
T Consensus 167 laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~ 202 (260)
T PRK10744 167 IARGIAIRPEVLLLDEPCSALDPISTGRIEELITEL 202 (260)
T ss_pred HHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999875
No 180
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.9e-33 Score=270.86 Aligned_cols=163 Identities=24% Similarity=0.312 Sum_probs=133.8
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCC-----CCceEEEcCc-----------
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISP-----TAGTRTVHRN----------- 339 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p-----~~G~i~~~~~----------- 339 (443)
+|+++|++++|+ ++++|+++||+|.+|++++|+||||||||||+++|+|+++| ++|+|.+.+.
T Consensus 4 ~l~i~~v~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~ 82 (258)
T PRK14241 4 RIDVKDLNIYYG-SFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVA 82 (258)
T ss_pred cEEEeeEEEEEC-CEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHH
Confidence 689999999996 46799999999999999999999999999999999999974 7999987531
Q ss_pred --eEEEEeccCcccccccchhHHHHHHHh--CCCC-C----HHHHHHHHhcCCCC---hhhhhccCCCCCHHHHHHHHHH
Q psy208 340 --LKFGYFSQHHVDQLDMNLRCVQLLEAA--FPGK-P----QEEYRRQLGGFGVS---GDLALQFVGSLSGGQKSRVAFA 407 (443)
Q Consensus 340 --~~ig~~~Q~~~~~l~~~~~~~~~~~~~--~~~~-~----~~~~~~~L~~~gl~---~~~~~~~~~~LSgGekqRl~lA 407 (443)
..++|++|++. +....++.+++... .... . .+.+..++..+++. ....++++.+|||||||||+||
T Consensus 83 ~~~~i~~~~q~~~--~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la 160 (258)
T PRK14241 83 VRRTIGMVFQRPN--PFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIA 160 (258)
T ss_pred HhcceEEEccccc--cCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHH
Confidence 24899999853 34445666665421 1111 1 23456678888874 2456789999999999999999
Q ss_pred HHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 408 RMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 408 ~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
|+++.+|++|||||||++||+.++..+.+.|.++
T Consensus 161 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~ 194 (258)
T PRK14241 161 RAIAVEPDVLLMDEPCSALDPISTLAIEDLINEL 194 (258)
T ss_pred HHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999875
No 181
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2.2e-33 Score=260.44 Aligned_cols=165 Identities=28% Similarity=0.449 Sum_probs=141.2
Q ss_pred CeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc------------eEE
Q psy208 275 PILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN------------LKF 342 (443)
Q Consensus 275 ~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------------~~i 342 (443)
++|+++||+..|+ ...+|++|||++.+|++++|+|+||+|||||||+|+|+.+|.+|+|.+.+. ..+
T Consensus 2 ~mL~v~~l~~~YG-~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi 80 (237)
T COG0410 2 PMLEVENLSAGYG-KIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGI 80 (237)
T ss_pred CceeEEeEeeccc-ceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCe
Confidence 5799999999996 578999999999999999999999999999999999999999999998642 359
Q ss_pred EEeccCcccccccchhHHHHHHHh-CCCC---C-HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeE
Q psy208 343 GYFSQHHVDQLDMNLRCVQLLEAA-FPGK---P-QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFL 417 (443)
Q Consensus 343 g~~~Q~~~~~l~~~~~~~~~~~~~-~~~~---~-~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lL 417 (443)
+|+||.. ..++..|+.+++... +... . ......+...|-...+..+++.++|||||||.++|||||+.+|++|
T Consensus 81 ~~VPegR--~iF~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~PklL 158 (237)
T COG0410 81 AYVPEGR--RIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLL 158 (237)
T ss_pred EeCcccc--cchhhCcHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCCEE
Confidence 9999974 577888999988632 1111 1 1125567777765567888999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHcccc
Q psy208 418 VLDEPTNHLDIETIEALGKAINKYT 442 (443)
Q Consensus 418 iLDEPTn~LD~~s~~~l~~~L~~~~ 442 (443)
+|||||.||-|.-.+.+.++|++..
T Consensus 159 LLDEPs~GLaP~iv~~I~~~i~~l~ 183 (237)
T COG0410 159 LLDEPSEGLAPKIVEEIFEAIKELR 183 (237)
T ss_pred EecCCccCcCHHHHHHHHHHHHHHH
Confidence 9999999999999999999987653
No 182
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.1e-33 Score=270.67 Aligned_cols=164 Identities=21% Similarity=0.297 Sum_probs=134.4
Q ss_pred CeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCC-----CCceEEEcCc----------
Q psy208 275 PILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISP-----TAGTRTVHRN---------- 339 (443)
Q Consensus 275 ~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p-----~~G~i~~~~~---------- 339 (443)
++|+++||+++|+ ++++|+|+||+|.+|++++|+||||||||||+++|+|+++| ++|+|.+.+.
T Consensus 3 ~~l~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 81 (253)
T PRK14267 3 FAIETVNLRVYYG-SNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPI 81 (253)
T ss_pred ceEEEEeEEEEeC-CeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChH
Confidence 4799999999996 46799999999999999999999999999999999999987 4999987531
Q ss_pred ---eEEEEeccCcccccccchhHHHHHHHh--CCC--CC----HHHHHHHHhcCCCCh---hhhhccCCCCCHHHHHHHH
Q psy208 340 ---LKFGYFSQHHVDQLDMNLRCVQLLEAA--FPG--KP----QEEYRRQLGGFGVSG---DLALQFVGSLSGGQKSRVA 405 (443)
Q Consensus 340 ---~~ig~~~Q~~~~~l~~~~~~~~~~~~~--~~~--~~----~~~~~~~L~~~gl~~---~~~~~~~~~LSgGekqRl~ 405 (443)
..++|++|++. +....++.+++... ... .. ...+..++..+++.. ...++++.+||||||||++
T Consensus 82 ~~~~~i~~~~q~~~--~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~ 159 (253)
T PRK14267 82 EVRREVGMVFQYPN--PFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLV 159 (253)
T ss_pred HHhhceeEEecCCc--cCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHH
Confidence 25899999863 34445666665421 111 01 134567788888742 3467889999999999999
Q ss_pred HHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 406 FARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 406 lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
||++++.+|++|||||||++||+.+++.+.+.|.++
T Consensus 160 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~ 195 (253)
T PRK14267 160 IARALAMKPKILLMDEPTANIDPVGTAKIEELLFEL 195 (253)
T ss_pred HHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999875
No 183
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.4e-34 Score=258.90 Aligned_cols=163 Identities=28% Similarity=0.376 Sum_probs=136.7
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcC----------ceEEEEe
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR----------NLKFGYF 345 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~----------~~~ig~~ 345 (443)
||++.+++++|+....+++||||++..|+++||+|+|||||||+||+|++++.|++|.|++.+ ..+||.+
T Consensus 1 Ml~v~~l~K~y~~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~IGVl 80 (245)
T COG4555 1 MLEVTDLTKSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGVL 80 (245)
T ss_pred CeeeeehhhhccCHHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhhhccee
Confidence 589999999997534489999999999999999999999999999999999999999998853 2357877
Q ss_pred ccCcccccccchhHHHHHHHh---C---CCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEE
Q psy208 346 SQHHVDQLDMNLRCVQLLEAA---F---PGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVL 419 (443)
Q Consensus 346 ~Q~~~~~l~~~~~~~~~~~~~---~---~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiL 419 (443)
+-. ..+....|..+++... + ....+.++..+.+.|++. +..+++++.+|.|+||||+|||||+++|+++||
T Consensus 81 ~~e--~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~-~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vl 157 (245)
T COG4555 81 FGE--RGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLL-EYLDRRVGEFSTGMKQKVAIARALVHDPSILVL 157 (245)
T ss_pred cCC--cChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChH-HHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEE
Confidence 743 2455666776665421 1 112245667788889985 688999999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHccc
Q psy208 420 DEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 420 DEPTn~LD~~s~~~l~~~L~~~ 441 (443)
||||||||+.+...+.+.+.+.
T Consensus 158 DEP~sGLDi~~~r~~~dfi~q~ 179 (245)
T COG4555 158 DEPTSGLDIRTRRKFHDFIKQL 179 (245)
T ss_pred cCCCCCccHHHHHHHHHHHHHh
Confidence 9999999999999999988764
No 184
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.4e-33 Score=282.93 Aligned_cols=159 Identities=28% Similarity=0.434 Sum_probs=135.0
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcC---------------ce
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR---------------NL 340 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~---------------~~ 340 (443)
||++ ||+++|+ ++ .+ |+||+|.+|++++|+||||||||||+|+|+|+++|++|+|.+.+ ..
T Consensus 1 ~l~~-~l~k~~~-~~-~~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~ 76 (352)
T PRK11144 1 MLEL-NFKQQLG-DL-CL-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKR 76 (352)
T ss_pred CeEE-EEEEEeC-CE-EE-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhC
Confidence 4778 9999996 33 33 99999999999999999999999999999999999999998743 12
Q ss_pred EEEEeccCcccccccchhHHHHHHHhCCCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEe
Q psy208 341 KFGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLD 420 (443)
Q Consensus 341 ~ig~~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLD 420 (443)
.++|++|++. +.+..++.+++...........+.+++..+|+. +..++++.+|||||||||+|||||+.+|++||||
T Consensus 77 ~i~~v~q~~~--l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgGq~qRvalaraL~~~p~llLLD 153 (352)
T PRK11144 77 RIGYVFQDAR--LFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIE-PLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMD 153 (352)
T ss_pred CEEEEcCCcc--cCCCCcHHHHHHhhhhhhhHHHHHHHHHHcCCc-hhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEc
Confidence 5899999863 455667777775332223345678899999996 5678999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHccc
Q psy208 421 EPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 421 EPTn~LD~~s~~~l~~~L~~~ 441 (443)
|||++||+.+++.+.+.|+++
T Consensus 154 EPts~LD~~~~~~l~~~L~~l 174 (352)
T PRK11144 154 EPLASLDLPRKRELLPYLERL 174 (352)
T ss_pred CCcccCCHHHHHHHHHHHHHH
Confidence 999999999999999998764
No 185
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.1e-33 Score=258.66 Aligned_cols=165 Identities=22% Similarity=0.325 Sum_probs=132.9
Q ss_pred CCeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCC-----ceEEEcC----------
Q psy208 274 PPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTA-----GTRTVHR---------- 338 (443)
Q Consensus 274 ~~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~-----G~i~~~~---------- 338 (443)
.+.++++||++.|+ .+.+|+|||+.|+++.++||+||+|||||||||++........ |+|.+.+
T Consensus 5 ~~~~~~~~l~~yYg-~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~ 83 (253)
T COG1117 5 IPAIEVRDLNLYYG-DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDV 83 (253)
T ss_pred cceeEecceeEEEC-chhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCH
Confidence 35799999999996 6789999999999999999999999999999999999887765 7777653
Q ss_pred ---ceEEEEeccCcccccccchhHHHHHHHhC--CCCC----HHHHHHHHhcCCC---ChhhhhccCCCCCHHHHHHHHH
Q psy208 339 ---NLKFGYFSQHHVDQLDMNLRCVQLLEAAF--PGKP----QEEYRRQLGGFGV---SGDLALQFVGSLSGGQKSRVAF 406 (443)
Q Consensus 339 ---~~~ig~~~Q~~~~~l~~~~~~~~~~~~~~--~~~~----~~~~~~~L~~~gl---~~~~~~~~~~~LSgGekqRl~l 406 (443)
+.++|+++|.|.. ++ .++++++.... .+.. ++.++..|....+ -.+.+++++..|||||+|||+|
T Consensus 84 ~~lRr~vGMVFQkPnP-Fp--~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcI 160 (253)
T COG1117 84 VELRRRVGMVFQKPNP-FP--MSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCI 160 (253)
T ss_pred HHHHHHheeeccCCCC-CC--chHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHH
Confidence 2369999998742 22 67788775321 1111 2234444544444 2356778899999999999999
Q ss_pred HHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHcccc
Q psy208 407 ARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKYT 442 (443)
Q Consensus 407 A~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~~ 442 (443)
||+++.+|+||||||||++|||.+...+++.|.+++
T Consensus 161 ARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk 196 (253)
T COG1117 161 ARALAVKPEVLLMDEPTSALDPISTLKIEELITELK 196 (253)
T ss_pred HHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHH
Confidence 999999999999999999999999999999987654
No 186
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=100.00 E-value=5.2e-33 Score=264.58 Aligned_cols=165 Identities=25% Similarity=0.360 Sum_probs=133.9
Q ss_pred CCeEEEeeeEEEeCCC--CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-----------e
Q psy208 274 PPILQLSEVNFEYVPG--KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-----------L 340 (443)
Q Consensus 274 ~~~l~~~~l~~~y~~~--~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~ 340 (443)
.++|+++|++++|++. .++|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+. .
T Consensus 9 ~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 88 (226)
T cd03248 9 KGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHS 88 (226)
T ss_pred CceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHh
Confidence 4579999999999642 46999999999999999999999999999999999999999999987642 3
Q ss_pred EEEEeccCcccccccchhHHHHHHHhCCCCCHH---------HHHHHHhcC--CCChhhhhccCCCCCHHHHHHHHHHHH
Q psy208 341 KFGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQE---------EYRRQLGGF--GVSGDLALQFVGSLSGGQKSRVAFARM 409 (443)
Q Consensus 341 ~ig~~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~L~~~--gl~~~~~~~~~~~LSgGekqRl~lA~a 409 (443)
.++|++|++. +. ..++.+++.......... .+..++..+ |+. ...++++.+|||||||||+||++
T Consensus 89 ~i~~~~q~~~--l~-~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~-~~~~~~~~~LSgG~~qrv~lara 164 (226)
T cd03248 89 KVSLVGQEPV--LF-ARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYD-TEVGEKGSQLSGGQKQRVAIARA 164 (226)
T ss_pred hEEEEecccH--HH-hhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhcccccc-chhhcCCCcCCHHHHHHHHHHHH
Confidence 5899999863 22 246666664222111111 124556666 664 35678899999999999999999
Q ss_pred hccCCCeEEEeCCCCCCCHHHHHHHHHHHcccc
Q psy208 410 CMAAPNFLVLDEPTNHLDIETIEALGKAINKYT 442 (443)
Q Consensus 410 l~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~~ 442 (443)
++.+|++|||||||++||+.+++.+.+.|.++.
T Consensus 165 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~ 197 (226)
T cd03248 165 LIRNPQVLILDEATSALDAESEQQVQQALYDWP 197 (226)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc
Confidence 999999999999999999999999999998753
No 187
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=100.00 E-value=4.6e-33 Score=279.39 Aligned_cols=169 Identities=21% Similarity=0.361 Sum_probs=138.8
Q ss_pred CCCeEEEeeeEEEeCC---CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCC---CceEEEcCc-------
Q psy208 273 SPPILQLSEVNFEYVP---GKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPT---AGTRTVHRN------- 339 (443)
Q Consensus 273 ~~~~l~~~~l~~~y~~---~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~---~G~i~~~~~------- 339 (443)
..++|+++||++.|+. ...+++|+||+|.+|++++|+|+||||||||+++|+|+++|+ +|+|.+++.
T Consensus 9 ~~~~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~ 88 (330)
T PRK09473 9 ADALLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPE 88 (330)
T ss_pred CCceEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCH
Confidence 3568999999999952 246999999999999999999999999999999999999996 999987542
Q ss_pred --------eEEEEeccCcccccccchhHHHHHHH---hCCCCC----HHHHHHHHhcCCCCh--hhhhccCCCCCHHHHH
Q psy208 340 --------LKFGYFSQHHVDQLDMNLRCVQLLEA---AFPGKP----QEEYRRQLGGFGVSG--DLALQFVGSLSGGQKS 402 (443)
Q Consensus 340 --------~~ig~~~Q~~~~~l~~~~~~~~~~~~---~~~~~~----~~~~~~~L~~~gl~~--~~~~~~~~~LSgGekq 402 (443)
..++|++|++...+++..++.+++.. ...... ...+.++|+.+|+.. +..++++++|||||+|
T Consensus 89 ~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~Q 168 (330)
T PRK09473 89 KELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQ 168 (330)
T ss_pred HHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHH
Confidence 25999999975456666665554422 111122 235677899999863 2357899999999999
Q ss_pred HHHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 403 RVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 403 Rl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
||+||+||+.+|++||+||||++||+.++..+.+.|.++
T Consensus 169 Rv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l 207 (330)
T PRK09473 169 RVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNEL 207 (330)
T ss_pred HHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998765
No 188
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=100.00 E-value=5.4e-33 Score=263.59 Aligned_cols=163 Identities=32% Similarity=0.438 Sum_probs=135.4
Q ss_pred eEEEeeeEEEeCCC---CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-------------
Q psy208 276 ILQLSEVNFEYVPG---KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN------------- 339 (443)
Q Consensus 276 ~l~~~~l~~~y~~~---~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------------- 339 (443)
+|+++|+++.|+++ +.+|+|+||++.+|++++|+|+||||||||+++|+|+++|++|+|.+.+.
T Consensus 1 ~l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (220)
T TIGR02982 1 VISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQL 80 (220)
T ss_pred CEEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHH
Confidence 47899999999632 57999999999999999999999999999999999999999999987531
Q ss_pred -eEEEEeccCcccccccchhHHHHHHHh---CCCCC----HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhc
Q psy208 340 -LKFGYFSQHHVDQLDMNLRCVQLLEAA---FPGKP----QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCM 411 (443)
Q Consensus 340 -~~ig~~~Q~~~~~l~~~~~~~~~~~~~---~~~~~----~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~ 411 (443)
..++|++|++. +....++.+++... ..... ...+..+++.+|+. +..++++.+||+|||||++||++++
T Consensus 81 ~~~i~~~~q~~~--~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~lS~G~~qrv~laral~ 157 (220)
T TIGR02982 81 RRNIGYIFQAHN--LLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLG-DHLDYYPHNLSGGQKQRVAIARALV 157 (220)
T ss_pred HhheEEEcCChh--hcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCh-hhhhcChhhCCHHHHHHHHHHHHHh
Confidence 35899999863 33344555554321 11111 23567889999985 5678899999999999999999999
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 412 AAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 412 ~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
.+|++|||||||++||+.+++.+.+.|.++
T Consensus 158 ~~p~illlDEP~~~LD~~~~~~l~~~l~~~ 187 (220)
T TIGR02982 158 HRPKLVLADEPTAALDSKSGRDVVELMQKL 187 (220)
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999998765
No 189
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=5e-33 Score=295.03 Aligned_cols=164 Identities=29% Similarity=0.395 Sum_probs=140.2
Q ss_pred CCeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc------------eE
Q psy208 274 PPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN------------LK 341 (443)
Q Consensus 274 ~~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------------~~ 341 (443)
.++|+++|++++|+ ++++|+|+||+|++|++++|+||||||||||||+|+|+++|++|+|.+.+. ..
T Consensus 9 ~~~l~~~~l~~~~~-~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 87 (510)
T PRK15439 9 PPLLCARSISKQYS-GVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLG 87 (510)
T ss_pred CceEEEEeEEEEeC-CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCC
Confidence 35899999999996 567999999999999999999999999999999999999999999987541 24
Q ss_pred EEEeccCcccccccchhHHHHHHHhCCC--CCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEE
Q psy208 342 FGYFSQHHVDQLDMNLRCVQLLEAAFPG--KPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVL 419 (443)
Q Consensus 342 ig~~~Q~~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiL 419 (443)
+||++|++. +....++.+++...... ...+.+..++..+++. ...++++.+|||||||||+||++|+.+|++|||
T Consensus 88 i~~v~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllL 164 (510)
T PRK15439 88 IYLVPQEPL--LFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQ-LDLDSSAGSLEVADRQIVEILRGLMRDSRILIL 164 (510)
T ss_pred EEEEeccCc--cCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCC-ccccCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 899999863 44556777776432211 1234577889999996 567899999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHccc
Q psy208 420 DEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 420 DEPTn~LD~~s~~~l~~~L~~~ 441 (443)
||||++||+.+++.+.+.|.++
T Consensus 165 DEPt~~LD~~~~~~l~~~l~~~ 186 (510)
T PRK15439 165 DEPTASLTPAETERLFSRIREL 186 (510)
T ss_pred ECCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999998765
No 190
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.8e-33 Score=297.32 Aligned_cols=163 Identities=27% Similarity=0.475 Sum_probs=134.6
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCceEEEEeccCccccccc
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDM 355 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ig~~~Q~~~~~l~~ 355 (443)
+|+++|++++|+ ++++|+|+||+|.+|++++|+||||||||||||+|+|+++|++|+|.+.....+||++|++. +..
T Consensus 1 ml~i~~ls~~~~-~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~--~~~ 77 (530)
T PRK15064 1 MLSTANITMQFG-AKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPNERLGKLRQDQF--AFE 77 (530)
T ss_pred CEEEEEEEEEeC-CcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCC--cCC
Confidence 489999999996 56899999999999999999999999999999999999999999999876667999999853 223
Q ss_pred chhHHHHHHHh----------------CC----------------------CCCHHHHHHHHhcCCCChhhhhccCCCCC
Q psy208 356 NLRCVQLLEAA----------------FP----------------------GKPQEEYRRQLGGFGVSGDLALQFVGSLS 397 (443)
Q Consensus 356 ~~~~~~~~~~~----------------~~----------------------~~~~~~~~~~L~~~gl~~~~~~~~~~~LS 397 (443)
..++.+++... .+ ......+..++..+|+.....++++.+||
T Consensus 78 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS 157 (530)
T PRK15064 78 EFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLMSEVA 157 (530)
T ss_pred CCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCchhhcC
Confidence 33433332210 00 01124567789999996434457899999
Q ss_pred HHHHHHHHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 398 GGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 398 gGekqRl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
|||||||+||++|+.+|++|||||||||||+.++.+|.+.|.++
T Consensus 158 gGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~ 201 (530)
T PRK15064 158 PGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNER 201 (530)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999998753
No 191
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.4e-33 Score=263.78 Aligned_cols=157 Identities=28% Similarity=0.370 Sum_probs=129.5
Q ss_pred EEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc---------------eE
Q psy208 277 LQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN---------------LK 341 (443)
Q Consensus 277 l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~---------------~~ 341 (443)
+++ ||+++|++ +.+ |+||+|.+ ++++|+||||||||||+++|+|+++|++|+|.+.+. ..
T Consensus 2 ~~~-~l~~~~~~-~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 76 (214)
T cd03297 2 LCV-DIEKRLPD-FTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRK 76 (214)
T ss_pred cee-eeeEecCC-eee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhc
Confidence 344 99999964 444 99999999 999999999999999999999999999999987531 25
Q ss_pred EEEeccCcccccccchhHHHHHHHhCCC----CCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeE
Q psy208 342 FGYFSQHHVDQLDMNLRCVQLLEAAFPG----KPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFL 417 (443)
Q Consensus 342 ig~~~Q~~~~~l~~~~~~~~~~~~~~~~----~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lL 417 (443)
++|++|++. +....++.+++...... .....+.+++..+++. ...++++.+||||||||++||++++.+|++|
T Consensus 77 i~~~~q~~~--~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~la~al~~~p~ll 153 (214)
T cd03297 77 IGLVFQQYA--LFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLD-HLLNRYPAQLSGGEKQRVALARALAAQPELL 153 (214)
T ss_pred EEEEecCCc--cCCCCCHHHHHHHHHhhCCHHHHHHHHHHHHHHcCCH-hHhhcCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 899999853 34445666665421111 1234567889999986 5678999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHccc
Q psy208 418 VLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 418 iLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
||||||++||+.+++.+.+.|.++
T Consensus 154 llDEPt~~LD~~~~~~l~~~l~~~ 177 (214)
T cd03297 154 LLDEPFSALDRALRLQLLPELKQI 177 (214)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHH
Confidence 999999999999999999998765
No 192
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.8e-33 Score=264.95 Aligned_cols=163 Identities=28% Similarity=0.437 Sum_probs=129.2
Q ss_pred EEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-----------eEEEEe
Q psy208 277 LQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-----------LKFGYF 345 (443)
Q Consensus 277 l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~ig~~ 345 (443)
|+++|++++|++++.+|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+. ..++|+
T Consensus 1 l~~~~l~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~ 80 (236)
T cd03253 1 IEFENVTFAYDPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGVV 80 (236)
T ss_pred CEEEEEEEEeCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEEE
Confidence 478999999964467999999999999999999999999999999999999999999988541 248999
Q ss_pred ccCcccccccchhHHHHHHHhCCCCCHHHHHHHHhcCCCCh----------hhhhccCCCCCHHHHHHHHHHHHhccCCC
Q psy208 346 SQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSG----------DLALQFVGSLSGGQKSRVAFARMCMAAPN 415 (443)
Q Consensus 346 ~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~----------~~~~~~~~~LSgGekqRl~lA~al~~~p~ 415 (443)
+|++. +. ..++.+++...........+...+..+++.. ...++++..|||||||||+||++|+.+|+
T Consensus 81 ~q~~~--~~-~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~ 157 (236)
T cd03253 81 PQDTV--LF-NDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPP 157 (236)
T ss_pred CCCCh--hh-cchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 99863 22 2477776643222223333333333333311 12456688999999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHcccc
Q psy208 416 FLVLDEPTNHLDIETIEALGKAINKYT 442 (443)
Q Consensus 416 lLiLDEPTn~LD~~s~~~l~~~L~~~~ 442 (443)
+|||||||++||+.+++.+.+.|.++.
T Consensus 158 llllDEP~~~LD~~~~~~l~~~l~~~~ 184 (236)
T cd03253 158 ILLLDEATSALDTHTEREIQAALRDVS 184 (236)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHhc
Confidence 999999999999999999999997653
No 193
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.4e-33 Score=272.48 Aligned_cols=166 Identities=30% Similarity=0.394 Sum_probs=137.5
Q ss_pred CCeEEEeeeEEEeCC-CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCC---ceEEEcCc----------
Q psy208 274 PPILQLSEVNFEYVP-GKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTA---GTRTVHRN---------- 339 (443)
Q Consensus 274 ~~~l~~~~l~~~y~~-~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~---G~i~~~~~---------- 339 (443)
..+|+++|+++.|++ .+++|+++||+|.+|++++|+||||||||||+++|+|+++|++ |+|.+.+.
T Consensus 3 ~~~l~i~~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~ 82 (282)
T PRK13640 3 DNIVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDI 82 (282)
T ss_pred CceEEEEEEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHH
Confidence 357999999999964 2469999999999999999999999999999999999999998 89987531
Q ss_pred -eEEEEeccCcccccccchhHHHHHHHh--CCCCCH----HHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhcc
Q psy208 340 -LKFGYFSQHHVDQLDMNLRCVQLLEAA--FPGKPQ----EEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMA 412 (443)
Q Consensus 340 -~~ig~~~Q~~~~~l~~~~~~~~~~~~~--~~~~~~----~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~ 412 (443)
..+||++|++.. .....++.+++... ...... +.+..++..+++. +..++++..|||||+||++||+||+.
T Consensus 83 ~~~ig~v~q~~~~-~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LS~G~~qrv~laral~~ 160 (282)
T PRK13640 83 REKVGIVFQNPDN-QFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGML-DYIDSEPANLSGGQKQRVAIAGILAV 160 (282)
T ss_pred HhheEEEEECHHH-hhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCh-hHhcCCcccCCHHHHHHHHHHHHHHc
Confidence 258999998632 22345666666421 112222 3467789999996 56789999999999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 413 APNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 413 ~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
+|++|||||||++||+.++..+.+.|.++
T Consensus 161 ~P~llllDEPt~gLD~~~~~~l~~~l~~l 189 (282)
T PRK13640 161 EPKIIILDESTSMLDPAGKEQILKLIRKL 189 (282)
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999765
No 194
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=7.3e-33 Score=262.58 Aligned_cols=162 Identities=25% Similarity=0.376 Sum_probs=132.5
Q ss_pred EEEeeeEEEeCCC-CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcC-----------ceEEEE
Q psy208 277 LQLSEVNFEYVPG-KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR-----------NLKFGY 344 (443)
Q Consensus 277 l~~~~l~~~y~~~-~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~ig~ 344 (443)
|+++|++++|++. +++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+ ...++|
T Consensus 3 l~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 82 (221)
T cd03244 3 IEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRISI 82 (221)
T ss_pred EEEEEEEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhEEE
Confidence 7899999999643 4799999999999999999999999999999999999999999998754 135899
Q ss_pred eccCcccccccchhHHHHHHHhCCCCCHHHHHHHHhcCCCChhh----------hhccCCCCCHHHHHHHHHHHHhccCC
Q psy208 345 FSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDL----------ALQFVGSLSGGQKSRVAFARMCMAAP 414 (443)
Q Consensus 345 ~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~----------~~~~~~~LSgGekqRl~lA~al~~~p 414 (443)
++|++. +. ..++.+++.. +......++...+..+++.... .++++..||+||+||++|||+++.+|
T Consensus 83 ~~q~~~--l~-~~tv~enl~~-~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p 158 (221)
T cd03244 83 IPQDPV--LF-SGTIRSNLDP-FGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKS 158 (221)
T ss_pred ECCCCc--cc-cchHHHHhCc-CCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCC
Confidence 999864 22 2366666532 2223345566666666664221 23688999999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHcccc
Q psy208 415 NFLVLDEPTNHLDIETIEALGKAINKYT 442 (443)
Q Consensus 415 ~lLiLDEPTn~LD~~s~~~l~~~L~~~~ 442 (443)
++|||||||++||+.+++.+.+.|.++.
T Consensus 159 ~llllDEP~~~LD~~~~~~l~~~l~~~~ 186 (221)
T cd03244 159 KILVLDEATASVDPETDALIQKTIREAF 186 (221)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999999998753
No 195
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7e-33 Score=269.17 Aligned_cols=164 Identities=22% Similarity=0.297 Sum_probs=134.2
Q ss_pred CCeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCC-----CCceEEEcC----------
Q psy208 274 PPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISP-----TAGTRTVHR---------- 338 (443)
Q Consensus 274 ~~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p-----~~G~i~~~~---------- 338 (443)
.++|+++|+++.|+ ++++|+|+||+|.+|++++|+|+||||||||+++|+|+++| ++|+|.+.+
T Consensus 10 ~~~l~~~~l~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 88 (258)
T PRK14268 10 QPQIKVENLNLWYG-EKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDV 88 (258)
T ss_pred ceeEEEeeeEEEeC-CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchH
Confidence 45799999999996 56799999999999999999999999999999999999985 899988743
Q ss_pred ---ceEEEEeccCcccccccchhHHHHHHHh--CCCCC----HHHHHHHHhcCCCC---hhhhhccCCCCCHHHHHHHHH
Q psy208 339 ---NLKFGYFSQHHVDQLDMNLRCVQLLEAA--FPGKP----QEEYRRQLGGFGVS---GDLALQFVGSLSGGQKSRVAF 406 (443)
Q Consensus 339 ---~~~ig~~~Q~~~~~l~~~~~~~~~~~~~--~~~~~----~~~~~~~L~~~gl~---~~~~~~~~~~LSgGekqRl~l 406 (443)
...++|++|++. +.. .++.+++... ..... ...+..+++.+++. ....++++.+|||||+|||+|
T Consensus 89 ~~~~~~i~~v~q~~~--~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~l 165 (258)
T PRK14268 89 VELRKNVGMVFQKPN--PFP-MSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCI 165 (258)
T ss_pred HHHhhhEEEEecCCc--cCc-ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHH
Confidence 124899999863 222 4666665421 11112 22456788888874 234678999999999999999
Q ss_pred HHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 407 ARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 407 A~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
||+|+.+|++|||||||++||+.++..+.+.|.++
T Consensus 166 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l 200 (258)
T PRK14268 166 ARTLAVKPKIILFDEPTSALDPISTARIEDLIMNL 200 (258)
T ss_pred HHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999765
No 196
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.7e-33 Score=284.89 Aligned_cols=148 Identities=23% Similarity=0.338 Sum_probs=125.7
Q ss_pred ceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc---------------eEEEEeccCccccccc
Q psy208 291 PILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN---------------LKFGYFSQHHVDQLDM 355 (443)
Q Consensus 291 ~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~---------------~~ig~~~Q~~~~~l~~ 355 (443)
.+|+|+||+|++|++++|+||||||||||+|+|+|+++|++|+|.+.+. ..++|++|++. +.+
T Consensus 42 ~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~--l~~ 119 (400)
T PRK10070 42 LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFA--LMP 119 (400)
T ss_pred EEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCc--CCC
Confidence 4899999999999999999999999999999999999999999987531 25999999863 445
Q ss_pred chhHHHHHHHh--CCCCC----HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCCHH
Q psy208 356 NLRCVQLLEAA--FPGKP----QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIE 429 (443)
Q Consensus 356 ~~~~~~~~~~~--~~~~~----~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD~~ 429 (443)
..++.+++... ..... .+.+.++++.+|+. +..++++.+|||||||||+|||||+.+|++|||||||++||+.
T Consensus 120 ~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~-~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~ 198 (400)
T PRK10070 120 HMTVLDNTAFGMELAGINAEERREKALDALRQVGLE-NYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPL 198 (400)
T ss_pred CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCC-hhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHH
Confidence 56777766421 11111 24567889999996 5678999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHccc
Q psy208 430 TIEALGKAINKY 441 (443)
Q Consensus 430 s~~~l~~~L~~~ 441 (443)
+++.+.+.|.++
T Consensus 199 ~r~~l~~~L~~l 210 (400)
T PRK10070 199 IRTEMQDELVKL 210 (400)
T ss_pred HHHHHHHHHHHH
Confidence 999999998765
No 197
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=4.9e-33 Score=297.79 Aligned_cols=164 Identities=32% Similarity=0.497 Sum_probs=135.1
Q ss_pred CCeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCceEEEEeccCccccc
Q psy208 274 PPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQL 353 (443)
Q Consensus 274 ~~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ig~~~Q~~~~~l 353 (443)
+.+|+++||+++|++++++|+|+||+|.+|++++|+|||||||||||++|+|+++|++|+|.+.....+||++|++. +
T Consensus 2 ~~~i~~~nls~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~--~ 79 (552)
T TIGR03719 2 QYIYTMNRVSKVVPPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGIKVGYLPQEPQ--L 79 (552)
T ss_pred cEEEEEeeEEEecCCCCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCC--C
Confidence 35799999999996346899999999999999999999999999999999999999999999876678999999863 3
Q ss_pred ccchhHHHHHHHh-----------------C--CCCC-----------------------HHHHHHHHhcCCCChhhhhc
Q psy208 354 DMNLRCVQLLEAA-----------------F--PGKP-----------------------QEEYRRQLGGFGVSGDLALQ 391 (443)
Q Consensus 354 ~~~~~~~~~~~~~-----------------~--~~~~-----------------------~~~~~~~L~~~gl~~~~~~~ 391 (443)
....++.+++... + .... ...+..++..+|+. ..++
T Consensus 80 ~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~ 157 (552)
T TIGR03719 80 DPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCP--PWDA 157 (552)
T ss_pred CCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCC--cccC
Confidence 3334544443210 0 0000 12345567778874 2578
Q ss_pred cCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 392 FVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 392 ~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
++.+|||||||||+||++|+.+|++|||||||||||+.++++|.+.|.++
T Consensus 158 ~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~ 207 (552)
T TIGR03719 158 DVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY 207 (552)
T ss_pred chhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999876
No 198
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=2.9e-33 Score=296.33 Aligned_cols=163 Identities=25% Similarity=0.339 Sum_probs=137.9
Q ss_pred CeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc------------eEE
Q psy208 275 PILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN------------LKF 342 (443)
Q Consensus 275 ~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------------~~i 342 (443)
++|+++|++++|+ ++++|+|+||+|.+|++++|+||||||||||+|+|+|+++|++|+|.+.+. ..+
T Consensus 3 ~~i~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 81 (501)
T PRK10762 3 ALLQLKGIDKAFP-GVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGI 81 (501)
T ss_pred ceEEEeeeEEEeC-CeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCE
Confidence 5799999999996 567999999999999999999999999999999999999999999987531 248
Q ss_pred EEeccCcccccccchhHHHHHHHhC------CCCC----HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhcc
Q psy208 343 GYFSQHHVDQLDMNLRCVQLLEAAF------PGKP----QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMA 412 (443)
Q Consensus 343 g~~~Q~~~~~l~~~~~~~~~~~~~~------~~~~----~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~ 412 (443)
+|++|++ .+....++.+++.... .... ...+.+++..+|+. +..++++.+|||||||||+||+||+.
T Consensus 82 ~~v~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~la~al~~ 158 (501)
T PRK10762 82 GIIHQEL--NLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLR-FSSDKLVGELSIGEQQMVEIAKVLSF 158 (501)
T ss_pred EEEEcch--hccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCC-CCccCchhhCCHHHHHHHHHHHHHhc
Confidence 9999985 2444567777664211 1111 23467789999996 45688999999999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 413 APNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 413 ~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
+|++|||||||++||+.++..+.+.|.++
T Consensus 159 ~p~lllLDEPt~~LD~~~~~~l~~~l~~l 187 (501)
T PRK10762 159 ESKVIIMDEPTDALTDTETESLFRVIREL 187 (501)
T ss_pred CCCEEEEeCCcCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999988765
No 199
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.9e-33 Score=272.01 Aligned_cols=164 Identities=26% Similarity=0.365 Sum_probs=135.6
Q ss_pred eEEEeeeEEEeCCC--CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcC-----------ceEE
Q psy208 276 ILQLSEVNFEYVPG--KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR-----------NLKF 342 (443)
Q Consensus 276 ~l~~~~l~~~y~~~--~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~i 342 (443)
+|+++||+++|++. .++|+|+||+|.+|++++|+|+||||||||+++|+|+++|++|+|.+.+ ...+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence 79999999999632 3599999999999999999999999999999999999999999998753 1258
Q ss_pred EEeccCcccccccchhHHHHHHHh--CCCCCH----HHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCe
Q psy208 343 GYFSQHHVDQLDMNLRCVQLLEAA--FPGKPQ----EEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNF 416 (443)
Q Consensus 343 g~~~Q~~~~~l~~~~~~~~~~~~~--~~~~~~----~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~l 416 (443)
||++|++.. .....++.+++... ...... +.+..++..+++. +..++++..|||||+||++|||+|+.+|++
T Consensus 84 ~~v~q~~~~-~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~lAraL~~~p~l 161 (277)
T PRK13642 84 GMVFQNPDN-QFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNML-DFKTREPARLSGGQKQRVAVAGIIALRPEI 161 (277)
T ss_pred EEEEECHHH-hhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCH-hHhhCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 999998631 22234666666421 111122 3456788889985 567889999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 417 LVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 417 LiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
|||||||++||+.+++.+.+.|.++
T Consensus 162 lllDEPt~~LD~~~~~~l~~~l~~l 186 (277)
T PRK13642 162 IILDESTSMLDPTGRQEIMRVIHEI 186 (277)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHH
Confidence 9999999999999999999998765
No 200
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.3e-33 Score=266.44 Aligned_cols=161 Identities=27% Similarity=0.360 Sum_probs=134.9
Q ss_pred EEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcC---------ceEEEEecc
Q psy208 277 LQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR---------NLKFGYFSQ 347 (443)
Q Consensus 277 l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~---------~~~ig~~~Q 347 (443)
|.++|++++|+ ++++|+++||+|.+|++++|+|+||||||||+++|+|+++|++|+|.+.+ ...++|++|
T Consensus 1 l~~~~l~~~~~-~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q 79 (232)
T cd03300 1 IELENVSKFYG-GFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVNTVFQ 79 (232)
T ss_pred CEEEeEEEEeC-CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcceEEEec
Confidence 46899999996 46899999999999999999999999999999999999999999998853 235899999
Q ss_pred CcccccccchhHHHHHHHh--CCCC----CHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeC
Q psy208 348 HHVDQLDMNLRCVQLLEAA--FPGK----PQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDE 421 (443)
Q Consensus 348 ~~~~~l~~~~~~~~~~~~~--~~~~----~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDE 421 (443)
++. +....++.+++... .... ....+..++..+|+. +..++.+..||+||+||++||++++.+|++|||||
T Consensus 80 ~~~--~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~lS~G~~qrl~laral~~~p~llllDE 156 (232)
T cd03300 80 NYA--LFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLE-GYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDE 156 (232)
T ss_pred ccc--cCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc-hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 863 33344556655321 1111 133566788889996 56788999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHccc
Q psy208 422 PTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 422 PTn~LD~~s~~~l~~~L~~~ 441 (443)
||++||+.+++.+.+.|.++
T Consensus 157 P~~gLD~~~~~~l~~~l~~~ 176 (232)
T cd03300 157 PLGALDLKLRKDMQLELKRL 176 (232)
T ss_pred CcccCCHHHHHHHHHHHHHH
Confidence 99999999999999999765
No 201
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-32 Score=267.60 Aligned_cols=167 Identities=26% Similarity=0.341 Sum_probs=134.9
Q ss_pred CCCCeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCC--C---CCceEEEcCc-------
Q psy208 272 LSPPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIIS--P---TAGTRTVHRN------- 339 (443)
Q Consensus 272 ~~~~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~--p---~~G~i~~~~~------- 339 (443)
.++++|+++|+++.|+ ++++|+|+||+|.+|++++|+|+||||||||+++|+|+++ | ++|+|.+.+.
T Consensus 8 ~~~~~l~i~~l~~~~~-~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~ 86 (259)
T PRK14274 8 MKQEVYQINGMNLWYG-QHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKV 86 (259)
T ss_pred cCCceEEEeeEEEEEC-CeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEcccccc
Confidence 3567899999999996 4679999999999999999999999999999999999987 3 6899876431
Q ss_pred ------eEEEEeccCcccccccchhHHHHHHHh--CCC-CC----HHHHHHHHhcCCCCh---hhhhccCCCCCHHHHHH
Q psy208 340 ------LKFGYFSQHHVDQLDMNLRCVQLLEAA--FPG-KP----QEEYRRQLGGFGVSG---DLALQFVGSLSGGQKSR 403 (443)
Q Consensus 340 ------~~ig~~~Q~~~~~l~~~~~~~~~~~~~--~~~-~~----~~~~~~~L~~~gl~~---~~~~~~~~~LSgGekqR 403 (443)
..++|++|++. +... ++.+++... ... .. ...+..+++.+++.. +..++++.+||||||||
T Consensus 87 ~~~~~~~~i~~v~q~~~--~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qr 163 (259)
T PRK14274 87 DLVELRKNIGMVFQKGN--PFPQ-SIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQR 163 (259)
T ss_pred CHHHHhhceEEEecCCc--cccc-CHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHH
Confidence 24899999863 2222 666665321 111 11 223556788888742 34678999999999999
Q ss_pred HHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHcccc
Q psy208 404 VAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKYT 442 (443)
Q Consensus 404 l~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~~ 442 (443)
++||++++.+|++|||||||++||+.++..+.+.|.++.
T Consensus 164 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~ 202 (259)
T PRK14274 164 LCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLK 202 (259)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999998753
No 202
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=100.00 E-value=2.1e-33 Score=258.38 Aligned_cols=143 Identities=30% Similarity=0.512 Sum_probs=116.2
Q ss_pred EEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCceEEEEeccCcccccccch
Q psy208 278 QLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNL 357 (443)
Q Consensus 278 ~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ig~~~Q~~~~~l~~~~ 357 (443)
+++|++++|+ ++++|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+. .+. + ....
T Consensus 1 ~~~~l~~~~~-~~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~-~~~---~-----~~~~- 69 (180)
T cd03214 1 EVENLSVGYG-GRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGK-DLA---S-----LSPK- 69 (180)
T ss_pred CeeEEEEEEC-CeeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCE-ECC---c-----CCHH-
Confidence 4789999996 467999999999999999999999999999999999999999999987642 111 1 0000
Q ss_pred hHHHHHHHhCCCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHH
Q psy208 358 RCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKA 437 (443)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~ 437 (443)
.....+.. +..++..+|+. +..++++.+|||||+||++|||+++.+|++|||||||++||+.+++.+.+.
T Consensus 70 ~~~~~i~~---------~~q~l~~~gl~-~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~ 139 (180)
T cd03214 70 ELARKIAY---------VPQALELLGLA-HLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLEL 139 (180)
T ss_pred HHHHHHhH---------HHHHHHHcCCH-hHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHH
Confidence 00000100 01177888886 456788999999999999999999999999999999999999999999999
Q ss_pred Hccc
Q psy208 438 INKY 441 (443)
Q Consensus 438 L~~~ 441 (443)
|.++
T Consensus 140 l~~~ 143 (180)
T cd03214 140 LRRL 143 (180)
T ss_pred HHHH
Confidence 9765
No 203
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8e-33 Score=266.85 Aligned_cols=162 Identities=23% Similarity=0.307 Sum_probs=133.6
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCC---CCCceEEEcCc-----------eE
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIIS---PTAGTRTVHRN-----------LK 341 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~---p~~G~i~~~~~-----------~~ 341 (443)
+++++|+++.|+ ++++|+|+||+|.+|++++|+|+||||||||+++|+|+++ |++|+|.+.+. ..
T Consensus 2 ~~~~~~l~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~ 80 (246)
T PRK14269 2 IAKTTNLNLFYG-KKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKN 80 (246)
T ss_pred ceeeeeeEEEEC-CEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhh
Confidence 578999999996 5689999999999999999999999999999999999974 79999987541 25
Q ss_pred EEEeccCcccccccchhHHHHHHHh--CCC------CCHHHHHHHHhcCCCCh---hhhhccCCCCCHHHHHHHHHHHHh
Q psy208 342 FGYFSQHHVDQLDMNLRCVQLLEAA--FPG------KPQEEYRRQLGGFGVSG---DLALQFVGSLSGGQKSRVAFARMC 410 (443)
Q Consensus 342 ig~~~Q~~~~~l~~~~~~~~~~~~~--~~~------~~~~~~~~~L~~~gl~~---~~~~~~~~~LSgGekqRl~lA~al 410 (443)
++|++|++. +.. .++.+++... ... .....+..+++.+++.. +..++++.+||||||||++|||++
T Consensus 81 i~~~~q~~~--l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral 157 (246)
T PRK14269 81 VGMVFQQPN--VFV-KSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARAL 157 (246)
T ss_pred EEEEecCCc--ccc-ccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHH
Confidence 899999863 222 4666666321 111 11234567889999853 346788999999999999999999
Q ss_pred ccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 411 MAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 411 ~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
+.+|++|||||||++||+.++..+.+.|.++
T Consensus 158 ~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~ 188 (246)
T PRK14269 158 AIKPKLLLLDEPTSALDPISSGVIEELLKEL 188 (246)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999865
No 204
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.3e-33 Score=267.44 Aligned_cols=165 Identities=19% Similarity=0.230 Sum_probs=134.7
Q ss_pred CCeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCC-----CCceEEEcC----------
Q psy208 274 PPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISP-----TAGTRTVHR---------- 338 (443)
Q Consensus 274 ~~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p-----~~G~i~~~~---------- 338 (443)
+++|+++|+++.|+ ++++|+|+||+|.+|++++|+|+||||||||+++|+|+.+| ++|+|.+.+
T Consensus 2 ~~~l~~~~l~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (251)
T PRK14270 2 KIKMESKNLNLWYG-EKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDV 80 (251)
T ss_pred ccEEEEEEeEEEEC-CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccH
Confidence 46899999999996 46799999999999999999999999999999999999875 799998753
Q ss_pred ---ceEEEEeccCcccccccchhHHHHHHH--hCCCC-C----HHHHHHHHhcCCCCh---hhhhccCCCCCHHHHHHHH
Q psy208 339 ---NLKFGYFSQHHVDQLDMNLRCVQLLEA--AFPGK-P----QEEYRRQLGGFGVSG---DLALQFVGSLSGGQKSRVA 405 (443)
Q Consensus 339 ---~~~ig~~~Q~~~~~l~~~~~~~~~~~~--~~~~~-~----~~~~~~~L~~~gl~~---~~~~~~~~~LSgGekqRl~ 405 (443)
...++|++|++. +.. .++.+++.. ..... . ...+..+++.+++.. +..++++..||||||||++
T Consensus 81 ~~~~~~i~~~~q~~~--~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~ 157 (251)
T PRK14270 81 VELRKRVGMVFQKPN--PFP-MSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLC 157 (251)
T ss_pred HHHHhheEEEecCCC--cCC-CcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHH
Confidence 124899999863 222 566666532 11111 1 234567788888742 3467899999999999999
Q ss_pred HHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHcccc
Q psy208 406 FARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKYT 442 (443)
Q Consensus 406 lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~~ 442 (443)
||++++.+|++|||||||++||+.++..+.+.|.++.
T Consensus 158 laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~ 194 (251)
T PRK14270 158 IARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELK 194 (251)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998763
No 205
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.1e-33 Score=295.81 Aligned_cols=163 Identities=25% Similarity=0.301 Sum_probs=137.6
Q ss_pred CeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc------------eEE
Q psy208 275 PILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN------------LKF 342 (443)
Q Consensus 275 ~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------------~~i 342 (443)
++|+++|++++|+ ++++|+|+||+|.+|++++|+||||||||||+|+|+|+++|++|+|.+.+. ..+
T Consensus 4 ~~l~~~~l~~~~~-~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i 82 (510)
T PRK09700 4 PYISMAGIGKSFG-PVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGI 82 (510)
T ss_pred ceEEEeeeEEEcC-CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCe
Confidence 5799999999996 567999999999999999999999999999999999999999999987531 248
Q ss_pred EEeccCcccccccchhHHHHHHHhC------CCC-------CHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHH
Q psy208 343 GYFSQHHVDQLDMNLRCVQLLEAAF------PGK-------PQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARM 409 (443)
Q Consensus 343 g~~~Q~~~~~l~~~~~~~~~~~~~~------~~~-------~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~a 409 (443)
+|++|++. +....++.+++.... ... ....+..++..+|+. +..++++.+|||||||||+||++
T Consensus 83 ~~v~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgG~~qrv~ia~a 159 (510)
T PRK09700 83 GIIYQELS--VIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLK-VDLDEKVANLSISHKQMLEIAKT 159 (510)
T ss_pred EEEeeccc--ccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCC-CCcccchhhCCHHHHHHHHHHHH
Confidence 99999853 344556666654211 010 123567789999996 56789999999999999999999
Q ss_pred hccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 410 CMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 410 l~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
|+.+|++|||||||++||+.++..+.+.|.++
T Consensus 160 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l 191 (510)
T PRK09700 160 LMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQL 191 (510)
T ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998765
No 206
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-32 Score=266.69 Aligned_cols=163 Identities=27% Similarity=0.375 Sum_probs=132.3
Q ss_pred CeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCC--CC---CCceEEEcC-----------
Q psy208 275 PILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGII--SP---TAGTRTVHR----------- 338 (443)
Q Consensus 275 ~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~--~p---~~G~i~~~~----------- 338 (443)
++|+++|++++|+ ++++|+++||+|.+|++++|+||||||||||+++|+|+. +| ++|+|.+.+
T Consensus 4 ~~l~~~~l~~~~~-~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~ 82 (252)
T PRK14239 4 PILQVSDLSVYYN-KKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTV 82 (252)
T ss_pred ceEEEEeeEEEEC-CeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchH
Confidence 5799999999996 467999999999999999999999999999999999985 46 589998753
Q ss_pred --ceEEEEeccCcccccccchhHHHHHHHh--CCCC-C----HHHHHHHHhcCCCCh---hhhhccCCCCCHHHHHHHHH
Q psy208 339 --NLKFGYFSQHHVDQLDMNLRCVQLLEAA--FPGK-P----QEEYRRQLGGFGVSG---DLALQFVGSLSGGQKSRVAF 406 (443)
Q Consensus 339 --~~~ig~~~Q~~~~~l~~~~~~~~~~~~~--~~~~-~----~~~~~~~L~~~gl~~---~~~~~~~~~LSgGekqRl~l 406 (443)
...++|++|++. +.. .++.+++... .... . ...+..++..+++.. +..++++.+|||||||||+|
T Consensus 83 ~~~~~i~~v~q~~~--~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~l 159 (252)
T PRK14239 83 DLRKEIGMVFQQPN--PFP-MSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCI 159 (252)
T ss_pred hhhhcEEEEecCCc--cCc-CcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHH
Confidence 125999999863 222 4666665421 1111 1 234556788888642 34678999999999999999
Q ss_pred HHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 407 ARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 407 A~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
|+|++.+|++|||||||++||+.++..+.+.|.++
T Consensus 160 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~ 194 (252)
T PRK14239 160 ARVLATSPKIILLDEPTSALDPISAGKIEETLLGL 194 (252)
T ss_pred HHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999865
No 207
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=100.00 E-value=1.3e-32 Score=265.99 Aligned_cols=165 Identities=25% Similarity=0.351 Sum_probs=132.1
Q ss_pred CCeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcC--CCCCCceEEEcCc------------
Q psy208 274 PPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGI--ISPTAGTRTVHRN------------ 339 (443)
Q Consensus 274 ~~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~--~~p~~G~i~~~~~------------ 339 (443)
+++|+++||++.|+ ++.+|+++||+|.+|+++||+|+||||||||+++|+|+ ++|++|+|.+.+.
T Consensus 5 ~~~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~ 83 (252)
T CHL00131 5 KPILEIKNLHASVN-ENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAH 83 (252)
T ss_pred CceEEEEeEEEEeC-CEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhhe
Confidence 35799999999996 46799999999999999999999999999999999998 5899999987431
Q ss_pred eEEEEeccCcccccccchhHHHHHHHhC---------CCCC----HHHHHHHHhcCCCChhhhhccCC-CCCHHHHHHHH
Q psy208 340 LKFGYFSQHHVDQLDMNLRCVQLLEAAF---------PGKP----QEEYRRQLGGFGVSGDLALQFVG-SLSGGQKSRVA 405 (443)
Q Consensus 340 ~~ig~~~Q~~~~~l~~~~~~~~~~~~~~---------~~~~----~~~~~~~L~~~gl~~~~~~~~~~-~LSgGekqRl~ 405 (443)
..++|++|++. +....+..+++.... .... ...+..++..+++.....++++. .|||||+|||+
T Consensus 84 ~~~~~~~q~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~ 161 (252)
T CHL00131 84 LGIFLAFQYPI--EIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNE 161 (252)
T ss_pred eeEEEEecccc--ccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHHHH
Confidence 13778888753 233334444432110 0011 23456788999986445677887 59999999999
Q ss_pred HHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 406 FARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 406 lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
||++++.+|++|||||||++||+.+++.+.+.|.++
T Consensus 162 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~ 197 (252)
T CHL00131 162 ILQMALLDSELAILDETDSGLDIDALKIIAEGINKL 197 (252)
T ss_pred HHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999765
No 208
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=100.00 E-value=1.4e-32 Score=265.17 Aligned_cols=163 Identities=24% Similarity=0.349 Sum_probs=128.2
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCC--CCCCceEEEcCc------------eE
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGII--SPTAGTRTVHRN------------LK 341 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~--~p~~G~i~~~~~------------~~ 341 (443)
+|+++|+++.|+ ++++|+|+||+|++|++++|+|+||||||||+++|+|++ +|++|+|.+.+. ..
T Consensus 1 ~i~~~nl~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (248)
T PRK09580 1 MLSIKDLHVSVE-DKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEG 79 (248)
T ss_pred CeEEEEEEEEeC-CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcc
Confidence 478999999996 467999999999999999999999999999999999995 699999987541 24
Q ss_pred EEEeccCcccccccchhHHHHHHH------hCCC---CC----HHHHHHHHhcCCCChhhhhccCC-CCCHHHHHHHHHH
Q psy208 342 FGYFSQHHVDQLDMNLRCVQLLEA------AFPG---KP----QEEYRRQLGGFGVSGDLALQFVG-SLSGGQKSRVAFA 407 (443)
Q Consensus 342 ig~~~Q~~~~~l~~~~~~~~~~~~------~~~~---~~----~~~~~~~L~~~gl~~~~~~~~~~-~LSgGekqRl~lA 407 (443)
++|++|++.. ....+...+... .... .. ...+...++.+++.....++++. .|||||||||+||
T Consensus 80 i~~~~q~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~la 157 (248)
T PRK09580 80 IFMAFQYPVE--IPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDIL 157 (248)
T ss_pred eEEEecCchh--ccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHH
Confidence 8999998632 222121111110 0000 01 23456678888886555667775 7999999999999
Q ss_pred HHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 408 RMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 408 ~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
||++.+|++|||||||++||+.+++.+.+.|.++
T Consensus 158 ral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l 191 (248)
T PRK09580 158 QMAVLEPELCILDESDSGLDIDALKIVADGVNSL 191 (248)
T ss_pred HHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999988764
No 209
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=100.00 E-value=1e-32 Score=264.60 Aligned_cols=162 Identities=28% Similarity=0.427 Sum_probs=127.1
Q ss_pred EEEeeeEEEeCC--CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcC-----------ceEEE
Q psy208 277 LQLSEVNFEYVP--GKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR-----------NLKFG 343 (443)
Q Consensus 277 l~~~~l~~~y~~--~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~ig 343 (443)
|+++|+++.|++ ++++|+|+||+|.+|++++|+|+||||||||+++|+|+++|++|+|.+.+ ...++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 478999999963 24699999999999999999999999999999999999999999998754 13599
Q ss_pred EeccCcccccccchhHHHHHHHhCCCCCHHHHHHHHhcCCCC----------hhhhhccCCCCCHHHHHHHHHHHHhccC
Q psy208 344 YFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVS----------GDLALQFVGSLSGGQKSRVAFARMCMAA 413 (443)
Q Consensus 344 ~~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~----------~~~~~~~~~~LSgGekqRl~lA~al~~~ 413 (443)
|++|++. +.. .++.+++...........+...+..+++. ....++++.+|||||+|||+||++++.+
T Consensus 81 ~~~q~~~--~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~ 157 (238)
T cd03249 81 LVSQEPV--LFD-GTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRN 157 (238)
T ss_pred EECCchh--hhh-hhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcC
Confidence 9999853 222 36666664322222223333333333321 1234567899999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 414 PNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 414 p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
|++|||||||++||+.+++.+.+.|.++
T Consensus 158 p~llllDEP~~gLD~~~~~~l~~~l~~~ 185 (238)
T cd03249 158 PKILLLDEATSALDAESEKLVQEALDRA 185 (238)
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999765
No 210
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-32 Score=266.53 Aligned_cols=164 Identities=22% Similarity=0.303 Sum_probs=133.7
Q ss_pred CeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCC--C---CCceEEEcC-----------
Q psy208 275 PILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIIS--P---TAGTRTVHR----------- 338 (443)
Q Consensus 275 ~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~--p---~~G~i~~~~----------- 338 (443)
..|+++|++++|+ ++++|+|+||+|.+|++++|+|+||||||||+++|+|+++ | ++|+|.+.+
T Consensus 3 ~~l~~~nl~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~ 81 (252)
T PRK14256 3 NKVKLEQLNVHFG-KNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPV 81 (252)
T ss_pred cEEEEEEEEEEeC-CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChH
Confidence 3589999999996 4679999999999999999999999999999999999986 4 689988753
Q ss_pred --ceEEEEeccCcccccccchhHHHHHHHh--CCC-CC----HHHHHHHHhcCCCCh---hhhhccCCCCCHHHHHHHHH
Q psy208 339 --NLKFGYFSQHHVDQLDMNLRCVQLLEAA--FPG-KP----QEEYRRQLGGFGVSG---DLALQFVGSLSGGQKSRVAF 406 (443)
Q Consensus 339 --~~~ig~~~Q~~~~~l~~~~~~~~~~~~~--~~~-~~----~~~~~~~L~~~gl~~---~~~~~~~~~LSgGekqRl~l 406 (443)
...++|++|++. +....++.+++... ... .. ...+..++..+++.. +..++++.+||||||||++|
T Consensus 82 ~~~~~i~~~~q~~~--~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~l 159 (252)
T PRK14256 82 SIRRRVGMVFQKPN--PFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCI 159 (252)
T ss_pred HhhccEEEEecCCC--CCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHH
Confidence 124899999853 34445666665421 111 11 234567788888753 34567899999999999999
Q ss_pred HHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 407 ARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 407 A~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
|++++.+|++|||||||++||+.+++.+.+.|.++
T Consensus 160 aral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~ 194 (252)
T PRK14256 160 ARTIAVKPEVILMDEPASALDPISTLKIEELIEEL 194 (252)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999876
No 211
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.4e-32 Score=262.93 Aligned_cols=161 Identities=27% Similarity=0.437 Sum_probs=128.2
Q ss_pred EEEeeeEEEeCCC-CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-----------eEEEE
Q psy208 277 LQLSEVNFEYVPG-KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-----------LKFGY 344 (443)
Q Consensus 277 l~~~~l~~~y~~~-~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~ig~ 344 (443)
|+++|++++|++. .++|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+. ..++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (234)
T cd03251 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGL 80 (234)
T ss_pred CEEEEEEEEeCCCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence 4789999999643 27999999999999999999999999999999999999999999987541 24899
Q ss_pred eccCcccccccchhHHHHHHHhCCCCCHHHHH---------HHHhcC--CCChhhhhccCCCCCHHHHHHHHHHHHhccC
Q psy208 345 FSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYR---------RQLGGF--GVSGDLALQFVGSLSGGQKSRVAFARMCMAA 413 (443)
Q Consensus 345 ~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~---------~~L~~~--gl~~~~~~~~~~~LSgGekqRl~lA~al~~~ 413 (443)
++|++. +. ..++.+++...........+. +.+..+ ++. ...++++.+||||||||++||++|+.+
T Consensus 81 ~~q~~~--~~-~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~~~~~~~~LS~G~~qrv~la~al~~~ 156 (234)
T cd03251 81 VSQDVF--LF-NDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYD-TVIGERGVKLSGGQRQRIAIARALLKD 156 (234)
T ss_pred eCCCCe--ec-cccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcc-eeeccCCCcCCHHHHHHHHHHHHHhcC
Confidence 999863 22 246777764322222222222 233333 333 235678899999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 414 PNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 414 p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
|++|||||||++||+.+++.+.+.|.++
T Consensus 157 p~lllLDEP~~~LD~~~~~~l~~~l~~~ 184 (234)
T cd03251 157 PPILILDEATSALDTESERLVQAALERL 184 (234)
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999875
No 212
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-32 Score=265.90 Aligned_cols=164 Identities=26% Similarity=0.349 Sum_probs=131.6
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCC-----CceEEEcC------------
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPT-----AGTRTVHR------------ 338 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~-----~G~i~~~~------------ 338 (443)
+|+++|++++|+ ++++|+|+||+|.+|++++|+|+||||||||+|+|+|+++|+ +|+|.+.+
T Consensus 4 ~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 82 (252)
T PRK14272 4 LLSAQDVNIYYG-DKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVA 82 (252)
T ss_pred EEEEeeeEEEEC-CEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHH
Confidence 689999999996 568999999999999999999999999999999999999874 89988743
Q ss_pred -ceEEEEeccCcccccccchhHHHHHHHh--CCCC-CH----HHHHHHHhcCCCC---hhhhhccCCCCCHHHHHHHHHH
Q psy208 339 -NLKFGYFSQHHVDQLDMNLRCVQLLEAA--FPGK-PQ----EEYRRQLGGFGVS---GDLALQFVGSLSGGQKSRVAFA 407 (443)
Q Consensus 339 -~~~ig~~~Q~~~~~l~~~~~~~~~~~~~--~~~~-~~----~~~~~~L~~~gl~---~~~~~~~~~~LSgGekqRl~lA 407 (443)
...++|++|++. +....++.+++... .... .. +.+...+..+++. ....++++.+|||||+||++||
T Consensus 83 ~~~~i~~~~q~~~--~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la 160 (252)
T PRK14272 83 MRRRVGMVFQKPN--PFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIA 160 (252)
T ss_pred hhceeEEEeccCc--cCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHH
Confidence 125899999863 34445666666421 1111 12 2234455666542 2345788999999999999999
Q ss_pred HHhccCCCeEEEeCCCCCCCHHHHHHHHHHHcccc
Q psy208 408 RMCMAAPNFLVLDEPTNHLDIETIEALGKAINKYT 442 (443)
Q Consensus 408 ~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~~ 442 (443)
++++.+|++|||||||++||+.+++.+.+.|+++.
T Consensus 161 ral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~ 195 (252)
T PRK14272 161 RALAVEPEILLMDEPTSALDPASTARIEDLMTDLK 195 (252)
T ss_pred HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999998753
No 213
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-32 Score=271.98 Aligned_cols=166 Identities=23% Similarity=0.261 Sum_probs=134.8
Q ss_pred CCCeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCC-----CCCceEEEcC---------
Q psy208 273 SPPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIIS-----PTAGTRTVHR--------- 338 (443)
Q Consensus 273 ~~~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~-----p~~G~i~~~~--------- 338 (443)
++++|+++|++++|+ ++++|+|+||+|.+|++++|+|+||||||||+++|+|+.+ |++|+|.+++
T Consensus 36 ~~~~l~~~~l~~~~~-~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~ 114 (286)
T PRK14275 36 GKPHVVAKNFSIYYG-EFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTD 114 (286)
T ss_pred CceEEEEeeeEEEEC-CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccc
Confidence 567899999999996 4679999999999999999999999999999999999864 4999998743
Q ss_pred ----ceEEEEeccCcccccccchhHHHHHHHh--CCCC-C----HHHHHHHHhcCCCC---hhhhhccCCCCCHHHHHHH
Q psy208 339 ----NLKFGYFSQHHVDQLDMNLRCVQLLEAA--FPGK-P----QEEYRRQLGGFGVS---GDLALQFVGSLSGGQKSRV 404 (443)
Q Consensus 339 ----~~~ig~~~Q~~~~~l~~~~~~~~~~~~~--~~~~-~----~~~~~~~L~~~gl~---~~~~~~~~~~LSgGekqRl 404 (443)
...++|++|++. +.. .++.+++... .... . .+.+..++..+++. .+..++++..|||||||||
T Consensus 115 ~~~~~~~i~~v~q~~~--l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv 191 (286)
T PRK14275 115 EVLLRKKIGMVFQKPN--PFP-KSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRL 191 (286)
T ss_pred hHHhhhcEEEECCCCC--CCc-cCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHH
Confidence 125899999863 222 3777666421 1111 1 23455677777763 2456788999999999999
Q ss_pred HHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHcccc
Q psy208 405 AFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKYT 442 (443)
Q Consensus 405 ~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~~ 442 (443)
+|||+|+.+|++|||||||++||+.+++.+.+.|.++.
T Consensus 192 ~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~ 229 (286)
T PRK14275 192 CVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELR 229 (286)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999998753
No 214
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=1.7e-32 Score=257.14 Aligned_cols=158 Identities=22% Similarity=0.329 Sum_probs=125.6
Q ss_pred EEEeeeEEEeCCC----CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCceEEEEeccCcccc
Q psy208 277 LQLSEVNFEYVPG----KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQ 352 (443)
Q Consensus 277 l~~~~l~~~y~~~----~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ig~~~Q~~~~~ 352 (443)
|+++||+++|++. +++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.+.+ .++|++|++.
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g--~i~~~~q~~~-- 76 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG--SIAYVSQEPW-- 76 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC--EEEEEecCch--
Confidence 4789999999653 3799999999999999999999999999999999999999999999876 7999999864
Q ss_pred cccchhHHHHHHHhCCCCCHHHHHHHHhcCCCCh----------hhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCC
Q psy208 353 LDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSG----------DLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEP 422 (443)
Q Consensus 353 l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~----------~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEP 422 (443)
+. ..++.+++.... ..........+..+++.. ...++++..||+|||||++|||+++.+|++||||||
T Consensus 77 l~-~~t~~enl~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP 154 (204)
T cd03250 77 IQ-NGTIRENILFGK-PFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDP 154 (204)
T ss_pred hc-cCcHHHHhccCC-CcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence 22 347777764321 112223333343333321 123456789999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHH-HHcc
Q psy208 423 TNHLDIETIEALGK-AINK 440 (443)
Q Consensus 423 Tn~LD~~s~~~l~~-~L~~ 440 (443)
|++||+.+++.+.+ ++..
T Consensus 155 ~~~LD~~~~~~l~~~ll~~ 173 (204)
T cd03250 155 LSAVDAHVGRHIFENCILG 173 (204)
T ss_pred cccCCHHHHHHHHHHHHHH
Confidence 99999999998887 4443
No 215
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-32 Score=268.93 Aligned_cols=165 Identities=22% Similarity=0.252 Sum_probs=132.9
Q ss_pred CCeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCC-----CCceEEEcC----------
Q psy208 274 PPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISP-----TAGTRTVHR---------- 338 (443)
Q Consensus 274 ~~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p-----~~G~i~~~~---------- 338 (443)
.++|+++|+++.|+ ++++|+++||+|.+|++++|+|+||||||||+++|+|+++| ++|+|.+.+
T Consensus 18 ~~~l~~~nl~~~~~-~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~ 96 (274)
T PRK14265 18 HSVFEVEGVKVFYG-GFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINS 96 (274)
T ss_pred CceEEEeeEEEEeC-CeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchh
Confidence 46899999999996 46799999999999999999999999999999999999863 689987743
Q ss_pred ---ceEEEEeccCcccccccchhHHHHHHHh--CCC---CCHHHHHHHHhcCCCC---hhhhhccCCCCCHHHHHHHHHH
Q psy208 339 ---NLKFGYFSQHHVDQLDMNLRCVQLLEAA--FPG---KPQEEYRRQLGGFGVS---GDLALQFVGSLSGGQKSRVAFA 407 (443)
Q Consensus 339 ---~~~ig~~~Q~~~~~l~~~~~~~~~~~~~--~~~---~~~~~~~~~L~~~gl~---~~~~~~~~~~LSgGekqRl~lA 407 (443)
...++|++|++. +.. .++.+++... ... .....+...+..+++. .+..++++..|||||+|||+||
T Consensus 97 ~~~~~~i~~v~q~~~--l~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LA 173 (274)
T PRK14265 97 VKLRRQVGMVFQRPN--PFP-KSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIA 173 (274)
T ss_pred HHHhhcEEEEccCCc--ccc-ccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHH
Confidence 125899999863 222 2666665421 111 1123345667777763 2356788999999999999999
Q ss_pred HHhccCCCeEEEeCCCCCCCHHHHHHHHHHHcccc
Q psy208 408 RMCMAAPNFLVLDEPTNHLDIETIEALGKAINKYT 442 (443)
Q Consensus 408 ~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~~ 442 (443)
|||+.+|++|||||||++||+.+++.+.+.|.++.
T Consensus 174 raL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~ 208 (274)
T PRK14265 174 RAIAMKPDVLLMDEPCSALDPISTRQVEELCLELK 208 (274)
T ss_pred HHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999998763
No 216
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=100.00 E-value=7.1e-33 Score=265.73 Aligned_cols=155 Identities=28% Similarity=0.369 Sum_probs=124.4
Q ss_pred EEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc----------eEEEEeccCccccc
Q psy208 284 FEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN----------LKFGYFSQHHVDQL 353 (443)
Q Consensus 284 ~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~----------~~ig~~~Q~~~~~l 353 (443)
+.|+ .+++|+|+||+|.+|++++|+|+||||||||+++|+|+++|++|+|.+.+. ..++|++|+. ..+
T Consensus 29 ~~~~-~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~-~~~ 106 (236)
T cd03267 29 RKYR-EVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQK-TQL 106 (236)
T ss_pred cccC-CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccchhhcccEEEEcCCc-ccc
Confidence 4453 467999999999999999999999999999999999999999999987542 2588987432 123
Q ss_pred ccchhHHHHHHH--hCCCCC----HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCC
Q psy208 354 DMNLRCVQLLEA--AFPGKP----QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD 427 (443)
Q Consensus 354 ~~~~~~~~~~~~--~~~~~~----~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD 427 (443)
....++.+++.. ...... ...+..++..+|+. +..++++..||||||||++||++++.+|++|||||||++||
T Consensus 107 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD 185 (236)
T cd03267 107 WWDLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLE-ELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLD 185 (236)
T ss_pred CCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh-hHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCC
Confidence 344555555421 111111 23456778888986 46788999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHccc
Q psy208 428 IETIEALGKAINKY 441 (443)
Q Consensus 428 ~~s~~~l~~~L~~~ 441 (443)
+.+++.+.+.|.++
T Consensus 186 ~~~~~~l~~~l~~~ 199 (236)
T cd03267 186 VVAQENIRNFLKEY 199 (236)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999999876
No 217
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-32 Score=269.34 Aligned_cols=162 Identities=27% Similarity=0.380 Sum_probs=134.2
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCC--------CceEEEcCc--------
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPT--------AGTRTVHRN-------- 339 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~--------~G~i~~~~~-------- 339 (443)
+|+++|++++|+ ++++|+++||+|.+|++++|+||||||||||+|+|+|+++|+ +|+|.+.+.
T Consensus 1 ml~~~nl~~~~~-~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~ 79 (272)
T PRK13547 1 MLTADHLHVARR-HRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAP 79 (272)
T ss_pred CeEEEEEEEEEC-CEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHH
Confidence 488999999995 568999999999999999999999999999999999999998 999987541
Q ss_pred ---eEEEEeccCcccccccchhHHHHHHHhC-CC---------CCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHH
Q psy208 340 ---LKFGYFSQHHVDQLDMNLRCVQLLEAAF-PG---------KPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAF 406 (443)
Q Consensus 340 ---~~ig~~~Q~~~~~l~~~~~~~~~~~~~~-~~---------~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~l 406 (443)
..++|++|++.. ....++.+++.... .. .....+..++..+++. ...++++.+|||||+|||+|
T Consensus 80 ~~~~~~~~v~q~~~~--~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~l 156 (272)
T PRK13547 80 RLARLRAVLPQAAQP--AFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGAT-ALVGRDVTTLSGGELARVQF 156 (272)
T ss_pred HHHhhcEEecccCCC--CCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcH-hhhcCCcccCCHHHHHHHHH
Confidence 137899998532 22356666664311 10 0123467788899986 46789999999999999999
Q ss_pred HHHhc---------cCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 407 ARMCM---------AAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 407 A~al~---------~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
|++|+ .+|++|||||||++||+.+++.+.+.|.++
T Consensus 157 aral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~ 200 (272)
T PRK13547 157 ARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRL 200 (272)
T ss_pred HHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHH
Confidence 99999 599999999999999999999999999865
No 218
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-32 Score=266.02 Aligned_cols=163 Identities=22% Similarity=0.313 Sum_probs=132.6
Q ss_pred CeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcC---CCC--CCceEEEcCc----------
Q psy208 275 PILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGI---ISP--TAGTRTVHRN---------- 339 (443)
Q Consensus 275 ~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~---~~p--~~G~i~~~~~---------- 339 (443)
++|+++|+++.|+ .+++|+|+||+|.+|++++|+|+||||||||+++|+|+ ++| ++|+|.+.+.
T Consensus 2 ~~l~~~~~~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 80 (250)
T PRK14245 2 VKIDARDVNFWYG-DFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVD 80 (250)
T ss_pred cEEEEEEEEEEEC-CEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHH
Confidence 5799999999996 46799999999999999999999999999999999997 455 5899977531
Q ss_pred ---eEEEEeccCcccccccchhHHHHHHHh--CCCC-----CHHHHHHHHhcCCCCh---hhhhccCCCCCHHHHHHHHH
Q psy208 340 ---LKFGYFSQHHVDQLDMNLRCVQLLEAA--FPGK-----PQEEYRRQLGGFGVSG---DLALQFVGSLSGGQKSRVAF 406 (443)
Q Consensus 340 ---~~ig~~~Q~~~~~l~~~~~~~~~~~~~--~~~~-----~~~~~~~~L~~~gl~~---~~~~~~~~~LSgGekqRl~l 406 (443)
..++|++|++. +.. .++.+++... .... ....+..++..+++.. ...++++.+||||||||++|
T Consensus 81 ~~~~~i~~v~q~~~--~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~l 157 (250)
T PRK14245 81 ELRKNVGMVFQRPN--PFP-KSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCI 157 (250)
T ss_pred HHhhheEEEecCCc--cCc-ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHH
Confidence 24899999863 222 3666665421 1111 1234667888888753 34678899999999999999
Q ss_pred HHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 407 ARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 407 A~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
||+|+.+|++|||||||++||+.+++.+.+.|.++
T Consensus 158 aral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~ 192 (250)
T PRK14245 158 ARAMAVSPSVLLMDEPASALDPISTAKVEELIHEL 192 (250)
T ss_pred HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999875
No 219
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-32 Score=265.84 Aligned_cols=164 Identities=24% Similarity=0.304 Sum_probs=133.4
Q ss_pred CeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCC-----CCceEEEcC-----------
Q psy208 275 PILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISP-----TAGTRTVHR----------- 338 (443)
Q Consensus 275 ~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p-----~~G~i~~~~----------- 338 (443)
++|+++|+++.|+ ++++|+++||+|++|++++|+|+||||||||+++|+|+++| ++|+|.+.+
T Consensus 2 ~~l~~~~l~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~ 80 (250)
T PRK14262 2 PIIEIENFSAYYG-EKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVT 80 (250)
T ss_pred ceEEEEeeEEEeC-CceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHH
Confidence 3799999999996 56899999999999999999999999999999999999874 899998753
Q ss_pred --ceEEEEeccCcccccccchhHHHHHHHh--CCC-CC----HHHHHHHHhcCCCCh---hhhhccCCCCCHHHHHHHHH
Q psy208 339 --NLKFGYFSQHHVDQLDMNLRCVQLLEAA--FPG-KP----QEEYRRQLGGFGVSG---DLALQFVGSLSGGQKSRVAF 406 (443)
Q Consensus 339 --~~~ig~~~Q~~~~~l~~~~~~~~~~~~~--~~~-~~----~~~~~~~L~~~gl~~---~~~~~~~~~LSgGekqRl~l 406 (443)
...++|++|++. +.. .++.+++... ... .. ...+...+..+++.. ...++++.+|||||+||++|
T Consensus 81 ~~~~~i~~~~q~~~--~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~l 157 (250)
T PRK14262 81 EYRKKVGMVFQKPT--PFP-MSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCI 157 (250)
T ss_pred HhhhhEEEEecCCc--cCc-ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHH
Confidence 135999999863 222 4666665421 111 11 223566778888743 24678999999999999999
Q ss_pred HHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHcccc
Q psy208 407 ARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKYT 442 (443)
Q Consensus 407 A~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~~ 442 (443)
|++++.+|++|||||||++||+.++..+.+.|.++.
T Consensus 158 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~ 193 (250)
T PRK14262 158 ARALAVEPEVILLDEPTSALDPIATQRIEKLLEELS 193 (250)
T ss_pred HHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999998753
No 220
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.7e-33 Score=292.65 Aligned_cols=163 Identities=23% Similarity=0.280 Sum_probs=138.0
Q ss_pred CeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCC--CCceEEEcCc------------e
Q psy208 275 PILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISP--TAGTRTVHRN------------L 340 (443)
Q Consensus 275 ~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p--~~G~i~~~~~------------~ 340 (443)
++|+++|++++|+ ++++|+|+||+|.+|++++|+||||||||||+|+|+|+++| ++|+|.+.+. .
T Consensus 4 ~~l~~~nl~~~~~-~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (506)
T PRK13549 4 YLLEMKNITKTFG-GVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERA 82 (506)
T ss_pred ceEEEeeeEEEeC-CeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHC
Confidence 5799999999996 56899999999999999999999999999999999999996 8999987531 3
Q ss_pred EEEEeccCcccccccchhHHHHHHHhC-----CCCC----HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhc
Q psy208 341 KFGYFSQHHVDQLDMNLRCVQLLEAAF-----PGKP----QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCM 411 (443)
Q Consensus 341 ~ig~~~Q~~~~~l~~~~~~~~~~~~~~-----~~~~----~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~ 411 (443)
.+||++|++. +....++.+++.... .... ...+.+++..+++. ...++++.+|||||||||+||+||+
T Consensus 83 ~i~~v~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqrv~la~al~ 159 (506)
T PRK13549 83 GIAIIHQELA--LVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLD-INPATPVGNLGLGQQQLVEIAKALN 159 (506)
T ss_pred CeEEEEeccc--cCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCC-CCcccchhhCCHHHHHHHHHHHHHh
Confidence 4999999863 444567777664211 0111 23567889999995 5678999999999999999999999
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 412 AAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 412 ~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
.+|++|||||||++||+.++..+.+.|.++
T Consensus 160 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l 189 (506)
T PRK13549 160 KQARLLILDEPTASLTESETAVLLDIIRDL 189 (506)
T ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999775
No 221
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.1e-32 Score=267.23 Aligned_cols=164 Identities=20% Similarity=0.244 Sum_probs=134.3
Q ss_pred CCeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCC-----CCCceEEEcC----------
Q psy208 274 PPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIIS-----PTAGTRTVHR---------- 338 (443)
Q Consensus 274 ~~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~-----p~~G~i~~~~---------- 338 (443)
.++|+++||+++|+ ++++|+|+||+|.+|++++|+|+||||||||+++|+|+++ |++|+|.+.+
T Consensus 18 ~~~l~~~nl~~~~~-~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 96 (267)
T PRK14237 18 EIALSTKDLHVYYG-KKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINV 96 (267)
T ss_pred CeEEEEeeEEEEEC-CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCCh
Confidence 45899999999995 5789999999999999999999999999999999999986 5899987653
Q ss_pred ---ceEEEEeccCcccccccchhHHHHHHHhC--CCC-C----HHHHHHHHhcCCCCh---hhhhccCCCCCHHHHHHHH
Q psy208 339 ---NLKFGYFSQHHVDQLDMNLRCVQLLEAAF--PGK-P----QEEYRRQLGGFGVSG---DLALQFVGSLSGGQKSRVA 405 (443)
Q Consensus 339 ---~~~ig~~~Q~~~~~l~~~~~~~~~~~~~~--~~~-~----~~~~~~~L~~~gl~~---~~~~~~~~~LSgGekqRl~ 405 (443)
...++|++|++. +.. .++.+++.... ... . ...+.+++..+++.. +..++++.+|||||+||++
T Consensus 97 ~~~~~~i~~v~q~~~--~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~ 173 (267)
T PRK14237 97 YEMRKHIGMVFQRPN--PFA-KSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLC 173 (267)
T ss_pred HHHhcceEEEecCCc--ccc-ccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHH
Confidence 124899999853 222 36666664321 111 1 234566788888742 3567899999999999999
Q ss_pred HHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 406 FARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 406 lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
|||+++.+|++|||||||++||+.+++.+.+.|.++
T Consensus 174 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~ 209 (267)
T PRK14237 174 IARAIAVKPDILLMDEPASALDPISTMQLEETMFEL 209 (267)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998765
No 222
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-32 Score=291.51 Aligned_cols=163 Identities=27% Similarity=0.343 Sum_probs=137.8
Q ss_pred CeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc------------eEE
Q psy208 275 PILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN------------LKF 342 (443)
Q Consensus 275 ~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------------~~i 342 (443)
++|+++|++++|+ ++++|+|+||+|++|++++|+||||||||||+|+|+|+++|++|+|.+.+. ..+
T Consensus 3 ~~l~~~~l~~~~~-~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i 81 (501)
T PRK11288 3 PYLSFDGIGKTFP-GVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGV 81 (501)
T ss_pred ceEEEeeeEEEEC-CEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCE
Confidence 5899999999996 467999999999999999999999999999999999999999999987531 258
Q ss_pred EEeccCcccccccchhHHHHHHHhC----CC-CC----HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccC
Q psy208 343 GYFSQHHVDQLDMNLRCVQLLEAAF----PG-KP----QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAA 413 (443)
Q Consensus 343 g~~~Q~~~~~l~~~~~~~~~~~~~~----~~-~~----~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~ 413 (443)
+|++|++. +....++.+++.... .. .. ...+..++..+|+. ...++++.+|||||||||+||++|+.+
T Consensus 82 ~~v~q~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGq~qrv~laral~~~ 158 (501)
T PRK11288 82 AIIYQELH--LVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVD-IDPDTPLKYLSIGQRQMVEIAKALARN 158 (501)
T ss_pred EEEEechh--ccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCC-CCcCCchhhCCHHHHHHHHHHHHHHhC
Confidence 99999853 444556666664311 01 11 23567889999996 456789999999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 414 PNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 414 p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
|++|||||||++||+.+++.+.+.|.++
T Consensus 159 p~lllLDEPt~~LD~~~~~~l~~~l~~~ 186 (501)
T PRK11288 159 ARVIAFDEPTSSLSAREIEQLFRVIREL 186 (501)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999865
No 223
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.4e-32 Score=251.35 Aligned_cols=131 Identities=34% Similarity=0.552 Sum_probs=113.5
Q ss_pred EEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc----------eEEEEec
Q psy208 277 LQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN----------LKFGYFS 346 (443)
Q Consensus 277 l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~----------~~ig~~~ 346 (443)
++++|++++|+ +.++|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++. ..++|++
T Consensus 1 l~~~~l~~~~~-~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~ 79 (173)
T cd03230 1 IEVRNLSKRYG-KKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLP 79 (173)
T ss_pred CEEEEEEEEEC-CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEEEe
Confidence 47899999996 457999999999999999999999999999999999999999999987542 3588999
Q ss_pred cCcccccccchhHHHHHHHhCCCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCC
Q psy208 347 QHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHL 426 (443)
Q Consensus 347 Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~L 426 (443)
|++. +....++.+++. |||||+||++||++++.+|++|||||||++|
T Consensus 80 q~~~--~~~~~tv~~~~~-------------------------------LS~G~~qrv~laral~~~p~illlDEPt~~L 126 (173)
T cd03230 80 EEPS--LYENLTVRENLK-------------------------------LSGGMKQRLALAQALLHDPELLILDEPTSGL 126 (173)
T ss_pred cCCc--cccCCcHHHHhh-------------------------------cCHHHHHHHHHHHHHHcCCCEEEEeCCccCC
Confidence 9753 233334443321 9999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHccc
Q psy208 427 DIETIEALGKAINKY 441 (443)
Q Consensus 427 D~~s~~~l~~~L~~~ 441 (443)
|+.+++.+.+.|.++
T Consensus 127 D~~~~~~l~~~l~~~ 141 (173)
T cd03230 127 DPESRREFWELLREL 141 (173)
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999999875
No 224
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-32 Score=267.91 Aligned_cols=165 Identities=22% Similarity=0.287 Sum_probs=132.3
Q ss_pred CCCeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCC-----CCCceEEEcC---------
Q psy208 273 SPPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIIS-----PTAGTRTVHR--------- 338 (443)
Q Consensus 273 ~~~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~-----p~~G~i~~~~--------- 338 (443)
+.++|+++|++++|+ ++++|+|+||+|.+|++++|+|+||||||||+++|+|+++ |++|+|.+.+
T Consensus 21 ~~~~l~~~~l~~~~~-~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~ 99 (271)
T PRK14238 21 KKVVFDTQNLNLWYG-EDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYS 99 (271)
T ss_pred CceEEEEeeeEEEEC-CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEccccccc
Confidence 456899999999996 4679999999999999999999999999999999999987 6999998753
Q ss_pred ----ceEEEEeccCcccccccchhHHHHHHHh--CCCC-C----HHHHHHHHhcCCCC---hhhhhccCCCCCHHHHHHH
Q psy208 339 ----NLKFGYFSQHHVDQLDMNLRCVQLLEAA--FPGK-P----QEEYRRQLGGFGVS---GDLALQFVGSLSGGQKSRV 404 (443)
Q Consensus 339 ----~~~ig~~~Q~~~~~l~~~~~~~~~~~~~--~~~~-~----~~~~~~~L~~~gl~---~~~~~~~~~~LSgGekqRl 404 (443)
...++|++|++. +.. .++.+++... .... . ...+...+..+++. ....++++..||||||||+
T Consensus 100 ~~~~~~~i~~v~q~~~--~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv 176 (271)
T PRK14238 100 VEELRTNVGMVFQKPN--PFP-KSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRL 176 (271)
T ss_pred HHHHhhhEEEEecCCc--ccc-ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHH
Confidence 124899999863 222 3666665421 1111 1 12234556666431 2346788999999999999
Q ss_pred HHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 405 AFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 405 ~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
+||++|+.+|++|||||||++||+.++..+.+.|.++
T Consensus 177 ~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~ 213 (271)
T PRK14238 177 CIARCLAIEPDVILMDEPTSALDPISTLKVEELVQEL 213 (271)
T ss_pred HHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999765
No 225
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-32 Score=265.70 Aligned_cols=163 Identities=20% Similarity=0.290 Sum_probs=133.0
Q ss_pred CeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCC-----CCCceEEEcCc----------
Q psy208 275 PILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIIS-----PTAGTRTVHRN---------- 339 (443)
Q Consensus 275 ~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~-----p~~G~i~~~~~---------- 339 (443)
++|+++|++++|+ .+++|+++||+|.+|++++|+|+||||||||+++|+|+++ |++|+|.+.+.
T Consensus 3 ~~l~~~~l~~~~~-~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~ 81 (251)
T PRK14251 3 NIISAKDVHLSYG-NYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLV 81 (251)
T ss_pred ceEEEEeeEEEEC-CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHH
Confidence 4799999999996 5689999999999999999999999999999999999997 47999877531
Q ss_pred ---eEEEEeccCcccccccchhHHHHHHHhC--CCC-----CHHHHHHHHhcCCCC---hhhhhccCCCCCHHHHHHHHH
Q psy208 340 ---LKFGYFSQHHVDQLDMNLRCVQLLEAAF--PGK-----PQEEYRRQLGGFGVS---GDLALQFVGSLSGGQKSRVAF 406 (443)
Q Consensus 340 ---~~ig~~~Q~~~~~l~~~~~~~~~~~~~~--~~~-----~~~~~~~~L~~~gl~---~~~~~~~~~~LSgGekqRl~l 406 (443)
..++|++|++. +.. .++.+++.... ... ....+..++..+++. ....++++.+|||||+||++|
T Consensus 82 ~~~~~i~~~~q~~~--~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~l 158 (251)
T PRK14251 82 ELRKEVGMVFQQPT--PFP-FSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICI 158 (251)
T ss_pred HhhccEEEEecCCc--cCC-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHH
Confidence 24899999863 222 46666654211 111 123456778888873 234578899999999999999
Q ss_pred HHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 407 ARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 407 A~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
||+++.+|++|||||||++||+.+++.+.+.|.++
T Consensus 159 aral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~ 193 (251)
T PRK14251 159 ARALAVRPKVVLLDEPTSALDPISSSEIEETLMEL 193 (251)
T ss_pred HHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999875
No 226
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=3.2e-32 Score=255.81 Aligned_cols=155 Identities=26% Similarity=0.360 Sum_probs=128.6
Q ss_pred CeEEEeeeEEEeCCC-CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcC-----------ceEE
Q psy208 275 PILQLSEVNFEYVPG-KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR-----------NLKF 342 (443)
Q Consensus 275 ~~l~~~~l~~~y~~~-~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~i 342 (443)
..|+++|++++|++. .++|+++||+|.+|++++|+|+||||||||+++|+|+++|++|+|.+.+ ...+
T Consensus 5 ~~l~~~~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 84 (207)
T cd03369 5 GEIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSSL 84 (207)
T ss_pred CeEEEEEEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhhE
Confidence 458999999999642 4799999999999999999999999999999999999999999998864 1359
Q ss_pred EEeccCcccccccchhHHHHHHHhCCCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCC
Q psy208 343 GYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEP 422 (443)
Q Consensus 343 g~~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEP 422 (443)
+|++|++. +.. .++.+++.. +.......+...++ .++++..|||||+||++|||+++.+|++||||||
T Consensus 85 ~~v~q~~~--~~~-~tv~~~l~~-~~~~~~~~~~~~l~--------~~~~~~~LS~G~~qrv~laral~~~p~llllDEP 152 (207)
T cd03369 85 TIIPQDPT--LFS-GTIRSNLDP-FDEYSDEEIYGALR--------VSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEA 152 (207)
T ss_pred EEEecCCc--ccC-ccHHHHhcc-cCCCCHHHHHHHhh--------ccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCC
Confidence 99999863 332 366666642 22223344444444 3467899999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHccc
Q psy208 423 TNHLDIETIEALGKAINKY 441 (443)
Q Consensus 423 Tn~LD~~s~~~l~~~L~~~ 441 (443)
|++||+.+++.+.+.|.++
T Consensus 153 ~~~LD~~~~~~l~~~l~~~ 171 (207)
T cd03369 153 TASIDYATDALIQKTIREE 171 (207)
T ss_pred cccCCHHHHHHHHHHHHHh
Confidence 9999999999999999875
No 227
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-32 Score=267.27 Aligned_cols=164 Identities=23% Similarity=0.276 Sum_probs=132.2
Q ss_pred CeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCC-----CCCceEEEcCc----------
Q psy208 275 PILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIIS-----PTAGTRTVHRN---------- 339 (443)
Q Consensus 275 ~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~-----p~~G~i~~~~~---------- 339 (443)
++|+++||+++|+ ++++|+|+||+|.+|++++|+|+||||||||+++|+|+++ |++|+|.+.+.
T Consensus 9 ~~l~i~~v~~~~~-~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 87 (264)
T PRK14243 9 TVLRTENLNVYYG-SFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPV 87 (264)
T ss_pred eEEEEeeeEEEEC-CEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChH
Confidence 5899999999996 4679999999999999999999999999999999999976 48999987531
Q ss_pred ---eEEEEeccCcccccccchhHHHHHHHhC--CC---CCHHHHHHHHhcCCCCh---hhhhccCCCCCHHHHHHHHHHH
Q psy208 340 ---LKFGYFSQHHVDQLDMNLRCVQLLEAAF--PG---KPQEEYRRQLGGFGVSG---DLALQFVGSLSGGQKSRVAFAR 408 (443)
Q Consensus 340 ---~~ig~~~Q~~~~~l~~~~~~~~~~~~~~--~~---~~~~~~~~~L~~~gl~~---~~~~~~~~~LSgGekqRl~lA~ 408 (443)
..++|++|++. +.. .++.+++.... .. ...+.+..++..+++.. ...++++.+|||||+||++|||
T Consensus 88 ~~~~~i~~v~q~~~--~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~lar 164 (264)
T PRK14243 88 EVRRRIGMVFQKPN--PFP-KSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIAR 164 (264)
T ss_pred HHhhhEEEEccCCc--ccc-ccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHH
Confidence 24899999863 222 36666654211 11 11234455677777632 2457889999999999999999
Q ss_pred HhccCCCeEEEeCCCCCCCHHHHHHHHHHHcccc
Q psy208 409 MCMAAPNFLVLDEPTNHLDIETIEALGKAINKYT 442 (443)
Q Consensus 409 al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~~ 442 (443)
+++.+|++|||||||++||+.+++.+.+.|.++.
T Consensus 165 al~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~ 198 (264)
T PRK14243 165 AIAVQPEVILMDEPCSALDPISTLRIEELMHELK 198 (264)
T ss_pred HHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999998763
No 228
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2.5e-33 Score=261.89 Aligned_cols=164 Identities=30% Similarity=0.445 Sum_probs=141.6
Q ss_pred CeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc------------eEE
Q psy208 275 PILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN------------LKF 342 (443)
Q Consensus 275 ~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------------~~i 342 (443)
+++++++|+++|+ +-.+++||||+|.+|++++||||||||||||+++|+|+++|++|+|.+.+. ..+
T Consensus 3 ~lL~v~~l~k~FG-Gl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi 81 (250)
T COG0411 3 PLLEVRGLSKRFG-GLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGI 81 (250)
T ss_pred ceeeeccceeecC-CEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccc
Confidence 5799999999996 678999999999999999999999999999999999999999999988642 246
Q ss_pred EEeccCcccccccchhHHHHHHHhC------------CC------CCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHH
Q psy208 343 GYFSQHHVDQLDMNLRCVQLLEAAF------------PG------KPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRV 404 (443)
Q Consensus 343 g~~~Q~~~~~l~~~~~~~~~~~~~~------------~~------~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl 404 (443)
+.-||.+ .+....|+++++.-.. +. ...+++..+|+.+|+. +.++.+.++||+||++||
T Consensus 82 ~RTFQ~~--rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~-~~a~~~A~~LsyG~qR~L 158 (250)
T COG0411 82 ARTFQIT--RLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLG-ELADRPAGNLSYGQQRRL 158 (250)
T ss_pred eeecccc--cccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCc-hhhcchhhcCChhHhHHH
Confidence 7778875 4667788888764321 00 1134577899999997 678999999999999999
Q ss_pred HHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHcccc
Q psy208 405 AFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKYT 442 (443)
Q Consensus 405 ~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~~ 442 (443)
.|||||+.+|++|+||||.+||.+.....+.+.|++.+
T Consensus 159 EIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~ 196 (250)
T COG0411 159 EIARALATQPKLLLLDEPAAGLNPEETEELAELIRELR 196 (250)
T ss_pred HHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988754
No 229
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.5e-32 Score=263.87 Aligned_cols=162 Identities=21% Similarity=0.279 Sum_probs=131.5
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCC-----CCceEEEcC------------
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISP-----TAGTRTVHR------------ 338 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p-----~~G~i~~~~------------ 338 (443)
.|+++||++.|+ ++++++|+||+|++|++++|+||||||||||+++|+|+++| ++|+|.+.+
T Consensus 3 ~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 81 (250)
T PRK14240 3 KISVKDLDLFYG-DFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQ 81 (250)
T ss_pred eEEEEEEEEEEC-CceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHH
Confidence 589999999996 46799999999999999999999999999999999999763 699998753
Q ss_pred -ceEEEEeccCcccccccchhHHHHHHHh--CCCC-----CHHHHHHHHhcCCCCh---hhhhccCCCCCHHHHHHHHHH
Q psy208 339 -NLKFGYFSQHHVDQLDMNLRCVQLLEAA--FPGK-----PQEEYRRQLGGFGVSG---DLALQFVGSLSGGQKSRVAFA 407 (443)
Q Consensus 339 -~~~ig~~~Q~~~~~l~~~~~~~~~~~~~--~~~~-----~~~~~~~~L~~~gl~~---~~~~~~~~~LSgGekqRl~lA 407 (443)
...++|++|++. +.. .++.+++... .... ..+.+.+++..+++.. ...++++.+||||||||++||
T Consensus 82 ~~~~i~~~~q~~~--~~~-~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la 158 (250)
T PRK14240 82 LRKRVGMVFQQPN--PFP-MSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIA 158 (250)
T ss_pred HhccEEEEecCCc--cCc-ccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHH
Confidence 125899999863 222 4666655321 1111 1234566777887642 345788999999999999999
Q ss_pred HHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 408 RMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 408 ~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
|+++.+|++|||||||++||+.++..+.+.|.++
T Consensus 159 ral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~ 192 (250)
T PRK14240 159 RALAVEPEVLLMDEPTSALDPISTLKIEELIQEL 192 (250)
T ss_pred HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999875
No 230
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=1.8e-32 Score=297.69 Aligned_cols=162 Identities=30% Similarity=0.476 Sum_probs=132.5
Q ss_pred CeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCceEEEEeccCcccccc
Q psy208 275 PILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLD 354 (443)
Q Consensus 275 ~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ig~~~Q~~~~~l~ 354 (443)
.+|+++||+++|+ ++++|+|+||+|.+|+++||+||||||||||||+|+|+++|++|+|.+.+...++|++|.+....
T Consensus 2 ~~l~i~~ls~~~~-~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~~~~~l~q~~~~~~- 79 (635)
T PRK11147 2 SLISIHGAWLSFS-DAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLIVARLQQDPPRNV- 79 (635)
T ss_pred cEEEEeeEEEEeC-CceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCCEEEEeccCCCCCC-
Confidence 3799999999996 57899999999999999999999999999999999999999999999887667889888642110
Q ss_pred cchhHHHH------------------------------HH------HhC---CC-CCHHHHHHHHhcCCCChhhhhccCC
Q psy208 355 MNLRCVQL------------------------------LE------AAF---PG-KPQEEYRRQLGGFGVSGDLALQFVG 394 (443)
Q Consensus 355 ~~~~~~~~------------------------------~~------~~~---~~-~~~~~~~~~L~~~gl~~~~~~~~~~ 394 (443)
..++.+. +. ..+ .. ....++..++..+|+. .+++++
T Consensus 80 -~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~---~~~~~~ 155 (635)
T PRK11147 80 -EGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLD---PDAALS 155 (635)
T ss_pred -CCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCC---CCCchh
Confidence 0111110 00 000 01 1234677889999985 278999
Q ss_pred CCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHcccc
Q psy208 395 SLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKYT 442 (443)
Q Consensus 395 ~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~~ 442 (443)
+|||||||||+||++|+.+|+||||||||||||+.++++|.+.|.+|+
T Consensus 156 ~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~ 203 (635)
T PRK11147 156 SLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQ 203 (635)
T ss_pred hcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999999999998764
No 231
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.5e-32 Score=263.20 Aligned_cols=160 Identities=27% Similarity=0.394 Sum_probs=133.7
Q ss_pred EEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcC---------ceEEEEecc
Q psy208 277 LQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR---------NLKFGYFSQ 347 (443)
Q Consensus 277 l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~---------~~~ig~~~Q 347 (443)
|+++|+++.|+ + ++|+|+||+|.+|++++|+|+||||||||+++|+|+++|++|+|.+.+ ...++|++|
T Consensus 1 l~~~~l~~~~~-~-~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~~~~~i~~~~q 78 (235)
T cd03299 1 LKVENLSKDWK-E-FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDISYVPQ 78 (235)
T ss_pred CeeEeEEEEeC-C-ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCChhHcCEEEEee
Confidence 46899999996 3 389999999999999999999999999999999999999999998754 235899999
Q ss_pred CcccccccchhHHHHHHHh--CCCC----CHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeC
Q psy208 348 HHVDQLDMNLRCVQLLEAA--FPGK----PQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDE 421 (443)
Q Consensus 348 ~~~~~l~~~~~~~~~~~~~--~~~~----~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDE 421 (443)
++. +....++.+++... .... ..+.+.+++..+|+. ...++++.+|||||+||++||++++.+|++|||||
T Consensus 79 ~~~--~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrl~laral~~~p~llllDE 155 (235)
T cd03299 79 NYA--LFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGID-HLLNRKPETLSGGEQQRVAIARALVVNPKILLLDE 155 (235)
T ss_pred cCc--cCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh-hHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEECC
Confidence 852 33445566665421 1111 223466788899985 56789999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHccc
Q psy208 422 PTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 422 PTn~LD~~s~~~l~~~L~~~ 441 (443)
||++||+.+++.+.+.|+++
T Consensus 156 Pt~gLD~~~~~~l~~~l~~~ 175 (235)
T cd03299 156 PFSALDVRTKEKLREELKKI 175 (235)
T ss_pred CcccCCHHHHHHHHHHHHHH
Confidence 99999999999999998764
No 232
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=1.4e-32 Score=253.37 Aligned_cols=136 Identities=24% Similarity=0.428 Sum_probs=115.0
Q ss_pred CCeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcC------------ceE
Q psy208 274 PPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR------------NLK 341 (443)
Q Consensus 274 ~~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~------------~~~ 341 (443)
+++|+++|++++| +|+++||+|++|++++|+|+||||||||+++|+|+++|++|+|.+++ ...
T Consensus 2 ~~~l~~~~l~~~~-----~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 76 (182)
T cd03215 2 EPVLEVRGLSVKG-----AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAG 76 (182)
T ss_pred CcEEEEeccEEEe-----eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCC
Confidence 4579999999998 89999999999999999999999999999999999999999998754 125
Q ss_pred EEEeccCcc-cccccchhHHHHHHHhCCCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEe
Q psy208 342 FGYFSQHHV-DQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLD 420 (443)
Q Consensus 342 ig~~~Q~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLD 420 (443)
++|++|++. ..+....++.+++.... .||||||||++||++++.+|++||||
T Consensus 77 i~~~~q~~~~~~~~~~~t~~e~l~~~~---------------------------~LS~G~~qrl~la~al~~~p~llllD 129 (182)
T cd03215 77 IAYVPEDRKREGLVLDLSVAENIALSS---------------------------LLSGGNQQKVVLARWLARDPRVLILD 129 (182)
T ss_pred eEEecCCcccCcccCCCcHHHHHHHHh---------------------------hcCHHHHHHHHHHHHHccCCCEEEEC
Confidence 889998742 12333345544442110 09999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHccc
Q psy208 421 EPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 421 EPTn~LD~~s~~~l~~~L~~~ 441 (443)
|||++||+.+++.+.+.|.++
T Consensus 130 EP~~~LD~~~~~~l~~~l~~~ 150 (182)
T cd03215 130 EPTRGVDVGAKAEIYRLIREL 150 (182)
T ss_pred CCCcCCCHHHHHHHHHHHHHH
Confidence 999999999999999999875
No 233
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-32 Score=264.45 Aligned_cols=164 Identities=23% Similarity=0.302 Sum_probs=131.7
Q ss_pred CCeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCC--C---CCceEEEcCc---------
Q psy208 274 PPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIIS--P---TAGTRTVHRN--------- 339 (443)
Q Consensus 274 ~~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~--p---~~G~i~~~~~--------- 339 (443)
+++|+++||+++|+ .+++|+|+||+|.+|++++|+|+||||||||+++|+|+++ | ++|+|.+.+.
T Consensus 3 ~~~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 81 (252)
T PRK14255 3 KKIITSSDVHLFYG-KFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDV 81 (252)
T ss_pred cceEEEEeEEEEEC-CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccH
Confidence 46899999999996 5689999999999999999999999999999999999875 5 5899877431
Q ss_pred ----eEEEEeccCcccccccchhHHHHHHHh--CCCC-C----HHHHHHHHhcCCCC---hhhhhccCCCCCHHHHHHHH
Q psy208 340 ----LKFGYFSQHHVDQLDMNLRCVQLLEAA--FPGK-P----QEEYRRQLGGFGVS---GDLALQFVGSLSGGQKSRVA 405 (443)
Q Consensus 340 ----~~ig~~~Q~~~~~l~~~~~~~~~~~~~--~~~~-~----~~~~~~~L~~~gl~---~~~~~~~~~~LSgGekqRl~ 405 (443)
..++|++|++. +.. .++.+++... .... . ...+...++.+++. .+..++++.+||||||||++
T Consensus 82 ~~~~~~i~~~~q~~~--~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~ 158 (252)
T PRK14255 82 VQLRKQVGMVFQQPN--PFP-FSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVC 158 (252)
T ss_pred HHhcCeEEEEECCCc--cCC-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHH
Confidence 25899999863 222 3666655421 1111 1 22345566777653 23567899999999999999
Q ss_pred HHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 406 FARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 406 lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
||++++.+|++|||||||++||+.+++.+.+.|.++
T Consensus 159 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~ 194 (252)
T PRK14255 159 IARVLAVKPDVILLDEPTSALDPISSTQIENMLLEL 194 (252)
T ss_pred HHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999875
No 234
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.4e-32 Score=282.12 Aligned_cols=163 Identities=33% Similarity=0.488 Sum_probs=138.4
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-----------eEEEE
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-----------LKFGY 344 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~ig~ 344 (443)
.++++|+++.|++++++++|+||++++|++++|+|+||||||||+++|+|+.+|++|+|.+++. .+++|
T Consensus 320 ei~~~~l~~~y~~g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~ 399 (559)
T COG4988 320 EISLENLSFRYPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISW 399 (559)
T ss_pred eeeecceEEecCCCCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeee
Confidence 4667799999987779999999999999999999999999999999999999999999998742 35999
Q ss_pred eccCcccccccchhHHHHHHHhCCCCCHHHHHHHHhcCCCChh-----hhhccCC----CCCHHHHHHHHHHHHhccCCC
Q psy208 345 FSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGD-----LALQFVG----SLSGGQKSRVAFARMCMAAPN 415 (443)
Q Consensus 345 ~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~-----~~~~~~~----~LSgGekqRl~lA~al~~~p~ 415 (443)
++|+|. + ...|..+++.-..+..+++++.+.++..|+..- -.+..++ .|||||+|||+|||||+.+++
T Consensus 400 v~Q~p~--l-f~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~ 476 (559)
T COG4988 400 VSQNPY--L-FAGTIRENILLARPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPAS 476 (559)
T ss_pred eCCCCc--c-ccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCCC
Confidence 999974 2 245777887665666678888888888776421 1233333 599999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 416 FLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 416 lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
++||||||+|||+++.+.+.+.|.+.
T Consensus 477 l~llDEpTA~LD~etE~~i~~~l~~l 502 (559)
T COG4988 477 LLLLDEPTAHLDAETEQIILQALQEL 502 (559)
T ss_pred EEEecCCccCCCHhHHHHHHHHHHHH
Confidence 99999999999999999999998764
No 235
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.8e-32 Score=263.77 Aligned_cols=163 Identities=22% Similarity=0.311 Sum_probs=131.9
Q ss_pred CeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCC-----CceEEEcC-----------
Q psy208 275 PILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPT-----AGTRTVHR----------- 338 (443)
Q Consensus 275 ~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~-----~G~i~~~~----------- 338 (443)
++|+++|++++|+ ++++|+|+||+|.+|++++|+||||||||||+++|+|+++|+ +|+|.+++
T Consensus 3 ~~l~~~~l~~~~~-~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~ 81 (251)
T PRK14249 3 PKIKIRGVNFFYH-KHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVV 81 (251)
T ss_pred ceEEEEEEEEEEC-CeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChH
Confidence 4799999999996 467999999999999999999999999999999999999997 69987642
Q ss_pred --ceEEEEeccCcccccccchhHHHHHHHh--CCCC-C----HHHHHHHHhcCCCC---hhhhhccCCCCCHHHHHHHHH
Q psy208 339 --NLKFGYFSQHHVDQLDMNLRCVQLLEAA--FPGK-P----QEEYRRQLGGFGVS---GDLALQFVGSLSGGQKSRVAF 406 (443)
Q Consensus 339 --~~~ig~~~Q~~~~~l~~~~~~~~~~~~~--~~~~-~----~~~~~~~L~~~gl~---~~~~~~~~~~LSgGekqRl~l 406 (443)
...++|++|++. +.. .++.+++... .... . ...+...+..+++. .+..++++.+||||||||++|
T Consensus 82 ~~~~~i~~v~q~~~--~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~l 158 (251)
T PRK14249 82 NLRKRVGMVFQQPN--PFP-KSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCI 158 (251)
T ss_pred HhhceEEEEecCCc--cCc-CcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHH
Confidence 135999999863 222 2666665421 1111 1 23345566667763 234678999999999999999
Q ss_pred HHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 407 ARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 407 A~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
||+++.+|++|||||||++||+.++..+.+.|.++
T Consensus 159 aral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~ 193 (251)
T PRK14249 159 ARVLAIEPEVILMDEPCSALDPVSTMRIEELMQEL 193 (251)
T ss_pred HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999765
No 236
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.5e-32 Score=267.85 Aligned_cols=164 Identities=24% Similarity=0.344 Sum_probs=133.8
Q ss_pred CCeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCC-----CCceEEEcC----------
Q psy208 274 PPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISP-----TAGTRTVHR---------- 338 (443)
Q Consensus 274 ~~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p-----~~G~i~~~~---------- 338 (443)
.++|+++||+++|+ ++++|+|+||+|.+|++++|+|+||||||||+++|+|+++| ++|+|.+.+
T Consensus 19 ~~~l~i~nl~~~~~-~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~ 97 (276)
T PRK14271 19 APAMAAVNLTLGFA-GKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVL 97 (276)
T ss_pred CcEEEEeeEEEEEC-CEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhH
Confidence 46899999999996 57899999999999999999999999999999999999986 699998753
Q ss_pred --ceEEEEeccCcccccccchhHHHHHHHhC---CCCCHH----HHHHHHhcCCCCh---hhhhccCCCCCHHHHHHHHH
Q psy208 339 --NLKFGYFSQHHVDQLDMNLRCVQLLEAAF---PGKPQE----EYRRQLGGFGVSG---DLALQFVGSLSGGQKSRVAF 406 (443)
Q Consensus 339 --~~~ig~~~Q~~~~~l~~~~~~~~~~~~~~---~~~~~~----~~~~~L~~~gl~~---~~~~~~~~~LSgGekqRl~l 406 (443)
...++|++|++. +.. .++.+++.... ...... .+..++..+++.. +..++++.+|||||+||++|
T Consensus 98 ~~~~~i~~v~q~~~--l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~L 174 (276)
T PRK14271 98 EFRRRVGMLFQRPN--PFP-MSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCL 174 (276)
T ss_pred HHhhheEEeccCCc--cCC-ccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHH
Confidence 125899999863 222 46666654211 111222 2356678888753 23568899999999999999
Q ss_pred HHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 407 ARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 407 A~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
||+|+.+|++|||||||++||+.+++.|.+.|.++
T Consensus 175 Aral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~ 209 (276)
T PRK14271 175 ARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSL 209 (276)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998765
No 237
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=3.3e-32 Score=257.79 Aligned_cols=155 Identities=25% Similarity=0.337 Sum_probs=125.3
Q ss_pred EEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc---------------eEE
Q psy208 278 QLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN---------------LKF 342 (443)
Q Consensus 278 ~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~---------------~~i 342 (443)
.+.|+.++|++..++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++. ..+
T Consensus 2 ~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i 81 (218)
T cd03290 2 QVTNGYFSWGSGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYSV 81 (218)
T ss_pred eeeeeEEecCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcceE
Confidence 57899999975678999999999999999999999999999999999999999999987431 358
Q ss_pred EEeccCcccccccchhHHHHHHHhCCCCCHHHHHHHHhcCCCChh----------hhhccCCCCCHHHHHHHHHHHHhcc
Q psy208 343 GYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGD----------LALQFVGSLSGGQKSRVAFARMCMA 412 (443)
Q Consensus 343 g~~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~----------~~~~~~~~LSgGekqRl~lA~al~~ 412 (443)
+|++|++. +. ..++.+++..... .........+..+++... ..++++..|||||||||+||++++.
T Consensus 82 ~~~~q~~~--~~-~~t~~~nl~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~ 157 (218)
T cd03290 82 AYAAQKPW--LL-NATVEENITFGSP-FNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQ 157 (218)
T ss_pred EEEcCCCc--cc-cccHHHHHhhcCc-CCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhh
Confidence 99999863 22 3466776653221 223344555666665321 1246789999999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHH
Q psy208 413 APNFLVLDEPTNHLDIETIEALGK 436 (443)
Q Consensus 413 ~p~lLiLDEPTn~LD~~s~~~l~~ 436 (443)
+|++|||||||++||+.+++.+.+
T Consensus 158 ~p~illlDEPt~~LD~~~~~~l~~ 181 (218)
T cd03290 158 NTNIVFLDDPFSALDIHLSDHLMQ 181 (218)
T ss_pred CCCEEEEeCCccccCHHHHHHHHH
Confidence 999999999999999999998887
No 238
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=1.4e-32 Score=292.92 Aligned_cols=168 Identities=21% Similarity=0.361 Sum_probs=135.6
Q ss_pred CCeEEEeeeEEEeCC---CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCC-----CCceEEEcCc------
Q psy208 274 PPILQLSEVNFEYVP---GKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISP-----TAGTRTVHRN------ 339 (443)
Q Consensus 274 ~~~l~~~~l~~~y~~---~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p-----~~G~i~~~~~------ 339 (443)
.++|+++|++++|++ .+++|+++||+|.+|+++||+||||||||||+|+|+|+++| ++|+|.+.+.
T Consensus 3 ~~~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~ 82 (529)
T PRK15134 3 QPLLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHAS 82 (529)
T ss_pred CceEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCC
Confidence 358999999999963 25799999999999999999999999999999999999987 7999977431
Q ss_pred ---------eEEEEeccCcccccccchhHHHHHHH---hCCCC----CHHHHHHHHhcCCCCh--hhhhccCCCCCHHHH
Q psy208 340 ---------LKFGYFSQHHVDQLDMNLRCVQLLEA---AFPGK----PQEEYRRQLGGFGVSG--DLALQFVGSLSGGQK 401 (443)
Q Consensus 340 ---------~~ig~~~Q~~~~~l~~~~~~~~~~~~---~~~~~----~~~~~~~~L~~~gl~~--~~~~~~~~~LSgGek 401 (443)
..+||++|++...+....++.+++.. ..... ....+.+++..+|+.. ...++++.+||||||
T Consensus 83 ~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~ 162 (529)
T PRK15134 83 EQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGER 162 (529)
T ss_pred HHHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHH
Confidence 25899999863223333444443321 11111 1245678899999963 245889999999999
Q ss_pred HHHHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 402 SRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 402 qRl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
|||+||+||+.+|++|||||||++||+.++..+.+.|.++
T Consensus 163 qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l 202 (529)
T PRK15134 163 QRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLREL 202 (529)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999764
No 239
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-32 Score=298.33 Aligned_cols=168 Identities=20% Similarity=0.344 Sum_probs=139.0
Q ss_pred CCeEEEeeeEEEeCC---CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcC------------
Q psy208 274 PPILQLSEVNFEYVP---GKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR------------ 338 (443)
Q Consensus 274 ~~~l~~~~l~~~y~~---~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~------------ 338 (443)
.++|+++|++++|+. ..++|+|+||+|.+|+++||+|+||||||||+|+|+|+++|++|+|.+++
T Consensus 10 ~~~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~ 89 (623)
T PRK10261 10 RDVLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIE 89 (623)
T ss_pred CceEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccc
Confidence 468999999999953 24799999999999999999999999999999999999999999987642
Q ss_pred -------------ceEEEEeccCcccccccchhHHHHHHHh---CCCCC----HHHHHHHHhcCCCCh--hhhhccCCCC
Q psy208 339 -------------NLKFGYFSQHHVDQLDMNLRCVQLLEAA---FPGKP----QEEYRRQLGGFGVSG--DLALQFVGSL 396 (443)
Q Consensus 339 -------------~~~ig~~~Q~~~~~l~~~~~~~~~~~~~---~~~~~----~~~~~~~L~~~gl~~--~~~~~~~~~L 396 (443)
...+||++|++...+.+..++.+++... ..... ..++.++|..+|+.. ...++++.+|
T Consensus 90 ~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~L 169 (623)
T PRK10261 90 LSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQL 169 (623)
T ss_pred cccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCccC
Confidence 1258999998633355556666665421 11111 245678899999953 3578999999
Q ss_pred CHHHHHHHHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 397 SGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 397 SgGekqRl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
||||||||+||+||+.+|+||||||||++||+.+++.+.+.|+++
T Consensus 170 SgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l 214 (623)
T PRK10261 170 SGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVL 214 (623)
T ss_pred CHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998765
No 240
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=100.00 E-value=2e-32 Score=262.64 Aligned_cols=161 Identities=27% Similarity=0.421 Sum_probs=134.7
Q ss_pred EEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcC---------ceEEEEecc
Q psy208 277 LQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR---------NLKFGYFSQ 347 (443)
Q Consensus 277 l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~---------~~~ig~~~Q 347 (443)
|+++|++++|+ ++++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+ ...++|++|
T Consensus 1 i~i~~l~~~~~-~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~~~~~i~~~~q 79 (237)
T TIGR00968 1 IEIANISKRFG-SFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIGFVFQ 79 (237)
T ss_pred CEEEEEEEEEC-CeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcCEEEEec
Confidence 47899999996 46899999999999999999999999999999999999999999998753 135899999
Q ss_pred CcccccccchhHHHHHHHh--CCCC----CHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeC
Q psy208 348 HHVDQLDMNLRCVQLLEAA--FPGK----PQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDE 421 (443)
Q Consensus 348 ~~~~~l~~~~~~~~~~~~~--~~~~----~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDE 421 (443)
++. +....++.+++... .... ....+.++++.+++. ...++++.+||+||+||++||++++.+|+++||||
T Consensus 80 ~~~--~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~lS~G~~qrl~laral~~~p~llllDE 156 (237)
T TIGR00968 80 HYA--LFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLE-GLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDE 156 (237)
T ss_pred Chh--hccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCH-hHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 863 33344556655321 1111 123567788999986 56789999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHccc
Q psy208 422 PTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 422 PTn~LD~~s~~~l~~~L~~~ 441 (443)
||++||+.+++.+.+.|.++
T Consensus 157 P~~~LD~~~~~~~~~~l~~~ 176 (237)
T TIGR00968 157 PFGALDAKVRKELRSWLRKL 176 (237)
T ss_pred CcccCCHHHHHHHHHHHHHH
Confidence 99999999999999999764
No 241
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-32 Score=266.37 Aligned_cols=166 Identities=26% Similarity=0.341 Sum_probs=134.9
Q ss_pred CCeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcC---------------
Q psy208 274 PPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR--------------- 338 (443)
Q Consensus 274 ~~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~--------------- 338 (443)
.++|.++|++++|+ ++++|+|+||+|.+|++++|+|+||||||||+++|+|+++|++|+|.+.+
T Consensus 8 ~~~i~~~~~~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~ 86 (257)
T PRK14246 8 EDVFNISRLYLYIN-DKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAI 86 (257)
T ss_pred hhheeeeeEEEecC-CceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHH
Confidence 46899999999996 57899999999999999999999999999999999999999997664432
Q ss_pred --ceEEEEeccCcccccccchhHHHHHHHhC--CC-CCH----HHHHHHHhcCCCCh---hhhhccCCCCCHHHHHHHHH
Q psy208 339 --NLKFGYFSQHHVDQLDMNLRCVQLLEAAF--PG-KPQ----EEYRRQLGGFGVSG---DLALQFVGSLSGGQKSRVAF 406 (443)
Q Consensus 339 --~~~ig~~~Q~~~~~l~~~~~~~~~~~~~~--~~-~~~----~~~~~~L~~~gl~~---~~~~~~~~~LSgGekqRl~l 406 (443)
...++|++|++. +....++.+++.... .. ... ..+..+++.+++.. +..++++..||+|||||++|
T Consensus 87 ~~~~~i~~~~q~~~--~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~l 164 (257)
T PRK14246 87 KLRKEVGMVFQQPN--PFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTI 164 (257)
T ss_pred HHhcceEEEccCCc--cCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHH
Confidence 135899999863 334456666554211 11 111 23567788888852 34678899999999999999
Q ss_pred HHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHcccc
Q psy208 407 ARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKYT 442 (443)
Q Consensus 407 A~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~~ 442 (443)
||+++.+|++|||||||++||+.++..+.+.|.++.
T Consensus 165 aral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~ 200 (257)
T PRK14246 165 ARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELK 200 (257)
T ss_pred HHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999998753
No 242
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.2e-32 Score=270.81 Aligned_cols=173 Identities=21% Similarity=0.278 Sum_probs=138.5
Q ss_pred cCCCCCCCCCeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCC-----CCCceEEEcCc-
Q psy208 266 FPDTELLSPPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIIS-----PTAGTRTVHRN- 339 (443)
Q Consensus 266 ~~~~~~~~~~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~-----p~~G~i~~~~~- 339 (443)
+.+++...+++|.++||++.|+ ++++|+++||+|.+|++++|+|+||||||||+++|+|+++ |++|+|.+.+.
T Consensus 35 ~~~~~~~~~~~l~i~nl~~~~~-~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~ 113 (305)
T PRK14264 35 WTDYEFDGDAKLSVEDLDVYYG-DDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQD 113 (305)
T ss_pred ccccccCCCceEEEEEEEEEeC-CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEE
Confidence 3344445567899999999996 4679999999999999999999999999999999999986 68999987531
Q ss_pred ------------eEEEEeccCcccccccchhHHHHHHHhCC--------------CC-----CHHHHHHHHhcCCCCh--
Q psy208 340 ------------LKFGYFSQHHVDQLDMNLRCVQLLEAAFP--------------GK-----PQEEYRRQLGGFGVSG-- 386 (443)
Q Consensus 340 ------------~~ig~~~Q~~~~~l~~~~~~~~~~~~~~~--------------~~-----~~~~~~~~L~~~gl~~-- 386 (443)
..++|++|++. +.. .++.+++..... .. ....+..++..+++..
T Consensus 114 i~~~~~~~~~~~~~i~~v~q~~~--l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~ 190 (305)
T PRK14264 114 IYQDGVNLVELRKRVGMVFQSPN--PFP-KSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEV 190 (305)
T ss_pred cccccccHHHHhhceEEEccCCc--ccc-ccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhh
Confidence 25899999863 222 366665542110 00 1234667788887742
Q ss_pred -hhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHcccc
Q psy208 387 -DLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKYT 442 (443)
Q Consensus 387 -~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~~ 442 (443)
...++++.+|||||+|||+||+||+.+|+||||||||++||+.++..|.+.|+++.
T Consensus 191 ~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~ 247 (305)
T PRK14264 191 NDRLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELA 247 (305)
T ss_pred hHHhcCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh
Confidence 34578899999999999999999999999999999999999999999999998763
No 243
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=100.00 E-value=2.1e-32 Score=260.53 Aligned_cols=163 Identities=27% Similarity=0.386 Sum_probs=133.7
Q ss_pred eEEEeeeEEEeCCC---CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCC---CCCceEEEcC--------ceE
Q psy208 276 ILQLSEVNFEYVPG---KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIIS---PTAGTRTVHR--------NLK 341 (443)
Q Consensus 276 ~l~~~~l~~~y~~~---~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~---p~~G~i~~~~--------~~~ 341 (443)
++.++||++.|++. +++|+|+||+|.+|++++|+||||||||||+|+|+|+++ |++|+|.+.+ ...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~ 82 (226)
T cd03234 3 VLPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKC 82 (226)
T ss_pred cceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhccc
Confidence 57899999999754 589999999999999999999999999999999999999 9999998754 235
Q ss_pred EEEeccCcccccccchhHHHHHHH--h--CCC-CC----HHHHHH-HHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhc
Q psy208 342 FGYFSQHHVDQLDMNLRCVQLLEA--A--FPG-KP----QEEYRR-QLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCM 411 (443)
Q Consensus 342 ig~~~Q~~~~~l~~~~~~~~~~~~--~--~~~-~~----~~~~~~-~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~ 411 (443)
++|++|++. +....++.+++.. . ... .. ...+.. .+..+++. ...++++..|||||+||++||++++
T Consensus 83 i~~~~q~~~--~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrl~laral~ 159 (226)
T cd03234 83 VAYVRQDDI--LLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALT-RIGGNLVKGISGGERRRVSIAVQLL 159 (226)
T ss_pred EEEeCCCCc--cCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcch-hhhcccccCcCHHHHHHHHHHHHHH
Confidence 899999853 3344566666542 1 111 11 112334 78888875 4567889999999999999999999
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 412 AAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 412 ~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
.+|++|||||||++||+.++..+.+.|.++
T Consensus 160 ~~p~illlDEP~~gLD~~~~~~~~~~l~~~ 189 (226)
T cd03234 160 WDPKVLILDEPTSGLDSFTALNLVSTLSQL 189 (226)
T ss_pred hCCCEEEEeCCCcCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999765
No 244
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=100.00 E-value=1.6e-32 Score=250.92 Aligned_cols=130 Identities=36% Similarity=0.629 Sum_probs=111.7
Q ss_pred EEEeeeEEEeCCC-CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcC-----------ceEEEE
Q psy208 277 LQLSEVNFEYVPG-KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR-----------NLKFGY 344 (443)
Q Consensus 277 l~~~~l~~~y~~~-~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~ig~ 344 (443)
|+++|++++|++. +++|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++ ...++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (173)
T cd03246 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGY 80 (173)
T ss_pred CEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEE
Confidence 4789999999642 4699999999999999999999999999999999999999999998754 135788
Q ss_pred eccCcccccccchhHHHHHHHhCCCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCC
Q psy208 345 FSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTN 424 (443)
Q Consensus 345 ~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn 424 (443)
++|++. +.. .++.+++ |||||+||++||++++.+|++|||||||+
T Consensus 81 ~~q~~~--~~~-~tv~~~l--------------------------------LS~G~~qrv~la~al~~~p~~lllDEPt~ 125 (173)
T cd03246 81 LPQDDE--LFS-GSIAENI--------------------------------LSGGQRQRLGLARALYGNPRILVLDEPNS 125 (173)
T ss_pred ECCCCc--ccc-CcHHHHC--------------------------------cCHHHHHHHHHHHHHhcCCCEEEEECCcc
Confidence 888752 222 2333222 99999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHccc
Q psy208 425 HLDIETIEALGKAINKY 441 (443)
Q Consensus 425 ~LD~~s~~~l~~~L~~~ 441 (443)
+||+.++..+.+.|.++
T Consensus 126 ~LD~~~~~~l~~~l~~~ 142 (173)
T cd03246 126 HLDVEGERALNQAIAAL 142 (173)
T ss_pred ccCHHHHHHHHHHHHHH
Confidence 99999999999999765
No 245
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=100.00 E-value=2.1e-32 Score=251.23 Aligned_cols=133 Identities=29% Similarity=0.441 Sum_probs=114.1
Q ss_pred EEEeeeEEEeCCC-CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc----------eEEEEe
Q psy208 277 LQLSEVNFEYVPG-KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN----------LKFGYF 345 (443)
Q Consensus 277 l~~~~l~~~y~~~-~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~----------~~ig~~ 345 (443)
|+++|++++|++. +++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+. ..++|+
T Consensus 1 i~~~~~~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~ 80 (178)
T cd03247 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVL 80 (178)
T ss_pred CEEEEEEEEeCCCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEEE
Confidence 4789999999643 37999999999999999999999999999999999999999999987642 348899
Q ss_pred ccCcccccccchhHHHHHHHhCCCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCC
Q psy208 346 SQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNH 425 (443)
Q Consensus 346 ~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~ 425 (443)
+|++. +. ..++.+++ +..|||||+||++|||+++.+|++|||||||++
T Consensus 81 ~q~~~--~~-~~tv~~~i-----------------------------~~~LS~G~~qrv~laral~~~p~~lllDEP~~~ 128 (178)
T cd03247 81 NQRPY--LF-DTTLRNNL-----------------------------GRRFSGGERQRLALARILLQDAPIVLLDEPTVG 128 (178)
T ss_pred ccCCe--ee-cccHHHhh-----------------------------cccCCHHHHHHHHHHHHHhcCCCEEEEECCccc
Confidence 88752 21 12333222 568999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHccc
Q psy208 426 LDIETIEALGKAINKY 441 (443)
Q Consensus 426 LD~~s~~~l~~~L~~~ 441 (443)
||+.+++.+.+.|.++
T Consensus 129 LD~~~~~~l~~~l~~~ 144 (178)
T cd03247 129 LDPITERQLLSLIFEV 144 (178)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999999765
No 246
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=4.6e-32 Score=292.42 Aligned_cols=162 Identities=25% Similarity=0.337 Sum_probs=136.4
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-----------eEEEE
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-----------LKFGY 344 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~ig~ 344 (443)
-++++||+|.|.+++++|+|+||+|++|+++||+||||||||||+++|+|++ |++|+|.+++. ..++|
T Consensus 349 ~i~~~~vsf~~~~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~ 427 (588)
T PRK11174 349 TIEAEDLEILSPDGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSW 427 (588)
T ss_pred eEEEEeeEEeccCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCCHHHHHhheEE
Confidence 4999999987755678999999999999999999999999999999999999 99999998752 36999
Q ss_pred eccCcccccccchhHHHHHHHhCCCCCHHHHHHHHhcCCCChh----------hhhccCCCCCHHHHHHHHHHHHhccCC
Q psy208 345 FSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGD----------LALQFVGSLSGGQKSRVAFARMCMAAP 414 (443)
Q Consensus 345 ~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~----------~~~~~~~~LSgGekqRl~lA~al~~~p 414 (443)
++|++. + .+.|+.+++....+..+++++.+.+...++... .......+||||||||++||||++++|
T Consensus 428 v~Q~~~--L-F~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~ 504 (588)
T PRK11174 428 VGQNPQ--L-PHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPC 504 (588)
T ss_pred ecCCCc--C-CCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCC
Confidence 999973 2 245788888755455677888888777766421 112334579999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 415 NFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 415 ~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
++|||||||++||.++.+.+.+.|.++
T Consensus 505 ~IliLDE~TSaLD~~te~~i~~~l~~~ 531 (588)
T PRK11174 505 QLLLLDEPTASLDAHSEQLVMQALNAA 531 (588)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999998765
No 247
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=100.00 E-value=2.8e-32 Score=276.50 Aligned_cols=155 Identities=25% Similarity=0.383 Sum_probs=129.9
Q ss_pred eeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcC---------------ceEEEEe
Q psy208 281 EVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR---------------NLKFGYF 345 (443)
Q Consensus 281 ~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~---------------~~~ig~~ 345 (443)
||+++|+ ++. + ++||+|.+|++++|+||||||||||||+|+|+++|++|+|.+.+ ...++|+
T Consensus 4 ~l~~~~~-~~~-~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v 80 (354)
T TIGR02142 4 RFSKRLG-DFS-L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYV 80 (354)
T ss_pred EEEEEEC-CEE-E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEEE
Confidence 8999996 444 4 99999999999999999999999999999999999999997743 1248999
Q ss_pred ccCcccccccchhHHHHHHHhCCC----CCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeC
Q psy208 346 SQHHVDQLDMNLRCVQLLEAAFPG----KPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDE 421 (443)
Q Consensus 346 ~Q~~~~~l~~~~~~~~~~~~~~~~----~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDE 421 (443)
+|++. +.+..++.+++...... .....+.+++..+++. +..++++.+|||||||||+|||||+.+|++|||||
T Consensus 81 ~q~~~--l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~-~~~~~~~~~LSgGqkqRvalAraL~~~p~lllLDE 157 (354)
T TIGR02142 81 FQEAR--LFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIG-HLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDE 157 (354)
T ss_pred ecCCc--cCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCCh-hHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcC
Confidence 99863 44556777776432111 1123477889999996 57889999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHccc
Q psy208 422 PTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 422 PTn~LD~~s~~~l~~~L~~~ 441 (443)
||++||+.+++.+.+.|.++
T Consensus 158 Pts~LD~~~~~~l~~~L~~l 177 (354)
T TIGR02142 158 PLAALDDPRKYEILPYLERL 177 (354)
T ss_pred CCcCCCHHHHHHHHHHHHHH
Confidence 99999999999999998765
No 248
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.5e-32 Score=265.57 Aligned_cols=164 Identities=24% Similarity=0.308 Sum_probs=134.1
Q ss_pred CCeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCC-----CCCceEEEcC----------
Q psy208 274 PPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIIS-----PTAGTRTVHR---------- 338 (443)
Q Consensus 274 ~~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~-----p~~G~i~~~~---------- 338 (443)
.++|+++|++++|+ ++++|+|+||+|.+|++++|+|+||||||||+++|+|+++ |++|+|.+.+
T Consensus 23 ~~~l~~~nl~~~~~-~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~ 101 (272)
T PRK14236 23 QTALEVRNLNLFYG-DKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDV 101 (272)
T ss_pred CcEEEEEEEEEEEC-CeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCH
Confidence 45899999999996 4679999999999999999999999999999999999987 4899998743
Q ss_pred ---ceEEEEeccCcccccccchhHHHHHHHh--CCCC-C----HHHHHHHHhcCCCCh---hhhhccCCCCCHHHHHHHH
Q psy208 339 ---NLKFGYFSQHHVDQLDMNLRCVQLLEAA--FPGK-P----QEEYRRQLGGFGVSG---DLALQFVGSLSGGQKSRVA 405 (443)
Q Consensus 339 ---~~~ig~~~Q~~~~~l~~~~~~~~~~~~~--~~~~-~----~~~~~~~L~~~gl~~---~~~~~~~~~LSgGekqRl~ 405 (443)
...++|++|++. +... ++.+++... .... . ...+...+..+++.. ...++++.+||||||||++
T Consensus 102 ~~~~~~i~~v~q~~~--l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~ 178 (272)
T PRK14236 102 AELRRRVGMVFQRPN--PFPK-SIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLV 178 (272)
T ss_pred HHHhccEEEEecCCc--cCcc-cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHH
Confidence 135899999863 2223 666665421 1111 1 233566777888753 3467889999999999999
Q ss_pred HHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 406 FARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 406 lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
|||+++.+|++|||||||++||+.++..+.+.|.++
T Consensus 179 laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~ 214 (272)
T PRK14236 179 IARAIAIEPEVLLLDEPTSALDPISTLKIEELITEL 214 (272)
T ss_pred HHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999875
No 249
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=1.2e-32 Score=290.79 Aligned_cols=162 Identities=21% Similarity=0.302 Sum_probs=133.5
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-----------eEEEE
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-----------LKFGY 344 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~ig~ 344 (443)
+|+++|++++|+ ++++|+|+||+|.+|++++|+||||||||||+|+|+|+++|++|+|.+... ..++|
T Consensus 3 ~l~~~~l~~~~~-~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~~ 81 (490)
T PRK10938 3 SLQISQGTFRLS-DTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSD 81 (490)
T ss_pred eEEEEeEEEEcC-CeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhce
Confidence 699999999996 467999999999999999999999999999999999999999999986431 13789
Q ss_pred eccCcccccc-c-----chhHHHHHHHhCCCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEE
Q psy208 345 FSQHHVDQLD-M-----NLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLV 418 (443)
Q Consensus 345 ~~Q~~~~~l~-~-----~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLi 418 (443)
++|++...+. . ..++.+++.. .....+.+..++..+|+. +..++++.+|||||||||+||+||+.+|++||
T Consensus 82 ~~q~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~la~al~~~p~lll 158 (490)
T PRK10938 82 EWQRNNTDMLSPGEDDTGRTTAEIIQD--EVKDPARCEQLAQQFGIT-ALLDRRFKYLSTGETRKTLLCQALMSEPDLLI 158 (490)
T ss_pred eccCcchhhcccchhhccccHHHhccc--chhHHHHHHHHHHHcCCH-hhhhCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 9997532111 1 2233333311 111234677889999996 56789999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHccc
Q psy208 419 LDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 419 LDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
|||||++||+.+++.+.+.|.++
T Consensus 159 LDEPt~~LD~~~~~~l~~~l~~~ 181 (490)
T PRK10938 159 LDEPFDGLDVASRQQLAELLASL 181 (490)
T ss_pred EcCCcccCCHHHHHHHHHHHHHH
Confidence 99999999999999999999876
No 250
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.8e-32 Score=255.61 Aligned_cols=146 Identities=24% Similarity=0.294 Sum_probs=122.4
Q ss_pred eEEEeeeEEEeCC---CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCC---CCCceEEEcCc----------
Q psy208 276 ILQLSEVNFEYVP---GKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIIS---PTAGTRTVHRN---------- 339 (443)
Q Consensus 276 ~l~~~~l~~~y~~---~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~---p~~G~i~~~~~---------- 339 (443)
.+.++||+|.|+. ++++|+++||+|.+|++++|+||||||||||+++|+|+++ |++|+|.+.+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~ 82 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYP 82 (202)
T ss_pred eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhc
Confidence 5789999999963 4579999999999999999999999999999999999999 89999987531
Q ss_pred eEEEEeccCcccccccchhHHHHHHHhCCCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEE
Q psy208 340 LKFGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVL 419 (443)
Q Consensus 340 ~~ig~~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiL 419 (443)
..++|++|++. +....++.+++.... . +. .++++..|||||+||++||++++.+|++|||
T Consensus 83 ~~i~~~~q~~~--~~~~~tv~~~l~~~~------~----~~--------~~~~~~~LS~Ge~qrl~laral~~~p~llll 142 (202)
T cd03233 83 GEIIYVSEEDV--HFPTLTVRETLDFAL------R----CK--------GNEFVRGISGGERKRVSIAEALVSRASVLCW 142 (202)
T ss_pred ceEEEEecccc--cCCCCcHHHHHhhhh------h----hc--------cccchhhCCHHHHHHHHHHHHHhhCCCEEEE
Confidence 25899999752 334456666653210 0 00 4567889999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHccc
Q psy208 420 DEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 420 DEPTn~LD~~s~~~l~~~L~~~ 441 (443)
||||++||+.+++.+.+.|.++
T Consensus 143 DEPt~~LD~~~~~~~~~~l~~~ 164 (202)
T cd03233 143 DNSTRGLDSSTALEILKCIRTM 164 (202)
T ss_pred cCCCccCCHHHHHHHHHHHHHH
Confidence 9999999999999999999875
No 251
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.2e-32 Score=251.17 Aligned_cols=133 Identities=32% Similarity=0.506 Sum_probs=111.6
Q ss_pred EEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-------------eEEE
Q psy208 277 LQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-------------LKFG 343 (443)
Q Consensus 277 l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-------------~~ig 343 (443)
|+++|++++|+ ++++++++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+. ..++
T Consensus 1 i~~~~l~~~~~-~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~ 79 (178)
T cd03229 1 LELKNVSKRYG-QKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIG 79 (178)
T ss_pred CEEEEEEEEEC-CeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcEE
Confidence 47899999996 467999999999999999999999999999999999999999999987541 2477
Q ss_pred EeccCcccccccchhHHHHHHHhCCCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCC
Q psy208 344 YFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPT 423 (443)
Q Consensus 344 ~~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPT 423 (443)
|++|++. +....++.+++.. .||||||||++||++++.+|++|||||||
T Consensus 80 ~~~q~~~--~~~~~t~~~~l~~-----------------------------~lS~G~~qr~~la~al~~~p~llilDEP~ 128 (178)
T cd03229 80 MVFQDFA--LFPHLTVLENIAL-----------------------------GLSGGQQQRVALARALAMDPDVLLLDEPT 128 (178)
T ss_pred EEecCCc--cCCCCCHHHheee-----------------------------cCCHHHHHHHHHHHHHHCCCCEEEEeCCc
Confidence 8877642 2222333322210 09999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHccc
Q psy208 424 NHLDIETIEALGKAINKY 441 (443)
Q Consensus 424 n~LD~~s~~~l~~~L~~~ 441 (443)
++||+.++..+.+.|.++
T Consensus 129 ~~LD~~~~~~l~~~l~~~ 146 (178)
T cd03229 129 SALDPITRREVRALLKSL 146 (178)
T ss_pred ccCCHHHHHHHHHHHHHH
Confidence 999999999999998765
No 252
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.7e-33 Score=259.60 Aligned_cols=167 Identities=29% Similarity=0.436 Sum_probs=135.0
Q ss_pred CCCeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcC------------ce
Q psy208 273 SPPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR------------NL 340 (443)
Q Consensus 273 ~~~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~------------~~ 340 (443)
..++|+++||++.|+ ++++|+|+|++|++||+++|+|||||||||||++++|.++|++|.+.+.+ +.
T Consensus 28 ~~~li~l~~v~v~r~-gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk 106 (257)
T COG1119 28 NEPLIELKNVSVRRN-GKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRK 106 (257)
T ss_pred CcceEEecceEEEEC-CEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHH
Confidence 346899999999995 68999999999999999999999999999999999999999999876532 23
Q ss_pred EEEEeccCcccccccchhHHHHHHHh-------CC-CCC---HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHH
Q psy208 341 KFGYFSQHHVDQLDMNLRCVQLLEAA-------FP-GKP---QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARM 409 (443)
Q Consensus 341 ~ig~~~Q~~~~~l~~~~~~~~~~~~~-------~~-~~~---~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~a 409 (443)
+|||++......+....++.+.+.+. +. ..+ ...+..+|..+|+. ...+++..+||-||||||.||||
T Consensus 107 ~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~-~la~r~~~~LS~Ge~rrvLiaRA 185 (257)
T COG1119 107 RIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAK-HLADRPFGSLSQGEQRRVLIARA 185 (257)
T ss_pred HhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchh-hhccCchhhcCHhHHHHHHHHHH
Confidence 57887754322333333444333221 11 122 23567789999986 58899999999999999999999
Q ss_pred hccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 410 CMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 410 l~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
|+.+|.+|||||||+|||...++.+.+.|.+.
T Consensus 186 Lv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~ 217 (257)
T COG1119 186 LVKDPELLILDEPAQGLDLIAREQLLNRLEEL 217 (257)
T ss_pred HhcCCCEEEecCccccCChHHHHHHHHHHHHH
Confidence 99999999999999999999999999888764
No 253
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.8e-32 Score=261.77 Aligned_cols=163 Identities=22% Similarity=0.318 Sum_probs=131.9
Q ss_pred CeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCC-----CCceEEEcCc----------
Q psy208 275 PILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISP-----TAGTRTVHRN---------- 339 (443)
Q Consensus 275 ~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p-----~~G~i~~~~~---------- 339 (443)
++|+++|+++.|+ ++++|+++||+|.+|++++|+||||||||||+++|+|+++| ++|+|.+.+.
T Consensus 2 ~~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~ 80 (249)
T PRK14253 2 NKFNIENLDLFYG-ENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVAD 80 (249)
T ss_pred CeEEEeccEEEEC-CeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHH
Confidence 3689999999996 56899999999999999999999999999999999999986 5999887531
Q ss_pred --eEEEEeccCcccccccchhHHHHHHHh--CCCC-C----HHHHHHHHhcCCCCh---hhhhccCCCCCHHHHHHHHHH
Q psy208 340 --LKFGYFSQHHVDQLDMNLRCVQLLEAA--FPGK-P----QEEYRRQLGGFGVSG---DLALQFVGSLSGGQKSRVAFA 407 (443)
Q Consensus 340 --~~ig~~~Q~~~~~l~~~~~~~~~~~~~--~~~~-~----~~~~~~~L~~~gl~~---~~~~~~~~~LSgGekqRl~lA 407 (443)
..++|++|++. +.. .++.+++... .... . ...+...+..+++.. +..++++.+|||||+|||+||
T Consensus 81 ~~~~i~~~~q~~~--~~~-~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la 157 (249)
T PRK14253 81 LRIKVGMVFQKPN--PFP-MSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIA 157 (249)
T ss_pred HHhheeEEecCCC--cCc-ccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHH
Confidence 24899999863 222 4666665421 1111 1 123455677777642 346788999999999999999
Q ss_pred HHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 408 RMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 408 ~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
++++.+|++|||||||++||+.++..+.+.|.++
T Consensus 158 ral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~ 191 (249)
T PRK14253 158 RTIAMEPDVILMDEPTSALDPIATHKIEELMEEL 191 (249)
T ss_pred HHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999875
No 254
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=100.00 E-value=1.3e-31 Score=267.38 Aligned_cols=289 Identities=23% Similarity=0.309 Sum_probs=192.2
Q ss_pred HHHHHHHHHhhcccCCHHHHHHHHHHhCCCChhhhhccCCCCChHHHH-----------------------------HHH
Q psy208 99 ELTQVFAELEAIEADKAPARASVILAGLGFTPEMQKRATKHFSGGWRK-----------------------------MAI 149 (443)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~-----------------------------~~i 149 (443)
...+++...++.+ +.+++.+.|++.. .++|.+++|||||-| -..
T Consensus 180 ~v~elLk~~de~g------~~devve~l~L~n-vl~r~v~~LSGGELQr~aIaa~l~rdADvY~FDEpsSyLDi~qRl~~ 252 (591)
T COG1245 180 KVGELLKKVDERG------KFDEVVERLGLEN-VLDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNA 252 (591)
T ss_pred hHHHHHHhhhhcC------cHHHHHHHhcchh-hhhhhhhhcCchHHHHHHHHHHHhccCCEEEEcCCcccccHHHHHHH
Confidence 4455555555444 7889999999986 479999999999988 122
Q ss_pred HHHHHHhhhCCCeEEEEecCHHHHhccCCcEEEEeCCeeEEEcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy208 150 IWLENYLQNWPTTLLVVSHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAFDKIKTEKLKNQQREIEAQRMHREHVQKFIDT 229 (443)
Q Consensus 150 ~wL~~~L~~~~~tviiVSHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 229 (443)
..+.+-|.+-+++||+|+||...||-++|-|..+ .|.- |-|-.+-..+..+. -+..+++-
T Consensus 253 ar~Irel~~~~k~ViVVEHDLavLD~lsD~vhI~-YG~p----g~YGvvs~p~svr~---------------gIN~yL~G 312 (591)
T COG1245 253 ARVIRELAEDGKYVIVVEHDLAVLDYLSDFVHIL-YGEP----GVYGVVSKPKSVRV---------------GINEYLKG 312 (591)
T ss_pred HHHHHHHhccCCeEEEEechHHHHHHhhheeEEE-ecCC----ccceEeccchHHHH---------------HHHHHHhc
Confidence 2333334333789999999999999999866555 4432 22222111110000 00011110
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCccccccccccCCCCC-CC-CCeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEE
Q psy208 230 FRYNANRASSVQSKIKQLERLPELKPIEKEVEVVLKFPDTEL-LS-PPILQLSEVNFEYVPGKPILTNVCLGATLESRIC 307 (443)
Q Consensus 230 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~ 307 (443)
+ +....-.-.+.++.|...++.. .. ..+++..++++.|++ .-|.-=.=+|..||+++
T Consensus 313 y-------------------l~~EN~R~R~~~I~F~~~~~~~~~~~~~lv~y~~~~k~~g~--F~L~V~~G~i~~gEvig 371 (591)
T COG1245 313 Y-------------------LPEENVRFRPEEIEFEEKPPRDDKARDTLVEYPDLKKTYGD--FKLEVEEGEIYDGEVIG 371 (591)
T ss_pred c-------------------CchhcccccccceeeeccCcccccccceeeecchheeecCc--eEEEecCCeeecceEEE
Confidence 0 0000000001122222222111 12 456777888888852 23333344567889999
Q ss_pred EECCCCCcHHHHHHHHHcCCCCCCceEEEcCceEEEEeccCcccccccchhHHHHHHHhCCC-C-CHHHHHHHHhcCCCC
Q psy208 308 IVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEAAFPG-K-PQEEYRRQLGGFGVS 385 (443)
Q Consensus 308 iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ig~~~Q~~~~~l~~~~~~~~~~~~~~~~-~-~~~~~~~~L~~~gl~ 385 (443)
++||||.||||++|+|+|.++|++|. ..+.+++|-||--. .+.+.++.+.+....+. . +..--.+++..+.+.
T Consensus 372 ilGpNgiGKTTFvk~LAG~ikPdeg~---~~~~~vSyKPQyI~--~~~~gtV~~~l~~~~~~~~~~s~~~~ei~~pl~l~ 446 (591)
T COG1245 372 ILGPNGIGKTTFVKLLAGVIKPDEGS---EEDLKVSYKPQYIS--PDYDGTVEDLLRSAIRSAFGSSYFKTEIVKPLNLE 446 (591)
T ss_pred EECCCCcchHHHHHHHhccccCCCCC---CccceEeecceeec--CCCCCcHHHHHHHhhhhhcccchhHHhhcCccchH
Confidence 99999999999999999999999998 55678999999643 34556666666544332 1 112224566777775
Q ss_pred hhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 386 GDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 386 ~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
+..++++..|||||.|||+||.+|..++++++||||+++||.+.+-....+|+++
T Consensus 447 -~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~vakvIRR~ 501 (591)
T COG1245 447 -DLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRF 501 (591)
T ss_pred -HHHhcccccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHHHHHHHHHHH
Confidence 6788999999999999999999999999999999999999999999999888865
No 255
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=2.4e-32 Score=289.25 Aligned_cols=163 Identities=23% Similarity=0.298 Sum_probs=135.0
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCC--CCceEEEcCc------------eE
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISP--TAGTRTVHRN------------LK 341 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p--~~G~i~~~~~------------~~ 341 (443)
+|+++|++++|+ ++++|+|+||+|.+|++++|+||||||||||+++|+|+++| ++|+|.+.+. ..
T Consensus 1 ~l~i~~l~~~~~-~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (500)
T TIGR02633 1 LLEMKGIVKTFG-GVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAG 79 (500)
T ss_pred CEEEEeEEEEeC-CeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCC
Confidence 478999999996 56799999999999999999999999999999999999987 7999987541 35
Q ss_pred EEEeccCcccccccchhHHHHHHHhC--C--C--CC----HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhc
Q psy208 342 FGYFSQHHVDQLDMNLRCVQLLEAAF--P--G--KP----QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCM 411 (443)
Q Consensus 342 ig~~~Q~~~~~l~~~~~~~~~~~~~~--~--~--~~----~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~ 411 (443)
+||++|++. +....++.+++.... . . .. ...+..++..+++.....++++.+|||||||||+||++|+
T Consensus 80 i~~v~q~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~ 157 (500)
T TIGR02633 80 IVIIHQELT--LVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALN 157 (500)
T ss_pred EEEEeeccc--cCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHh
Confidence 899999863 344556666654211 0 0 11 2346778999998643335789999999999999999999
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 412 AAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 412 ~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
.+|++|||||||++||+.+++.+.+.|.++
T Consensus 158 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l 187 (500)
T TIGR02633 158 KQARLLILDEPSSSLTEKETEILLDIIRDL 187 (500)
T ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999998765
No 256
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.8e-32 Score=263.44 Aligned_cols=164 Identities=21% Similarity=0.303 Sum_probs=133.4
Q ss_pred CeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCC-----CCceEEEcCc----------
Q psy208 275 PILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISP-----TAGTRTVHRN---------- 339 (443)
Q Consensus 275 ~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p-----~~G~i~~~~~---------- 339 (443)
++|+++|+++.|+ ++++|+|+||+|.+|++++|+|+||||||||+|+|+|+++| ++|+|.+.+.
T Consensus 6 ~~l~~~~l~~~~~-~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 84 (259)
T PRK14260 6 PAIKVKDLSFYYN-TSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININ 84 (259)
T ss_pred ceEEEEEEEEEEC-CeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchH
Confidence 3699999999996 46799999999999999999999999999999999999985 4899887531
Q ss_pred ---eEEEEeccCcccccccchhHHHHHHHhC------CCCC-HHHHHHHHhcCCCC---hhhhhccCCCCCHHHHHHHHH
Q psy208 340 ---LKFGYFSQHHVDQLDMNLRCVQLLEAAF------PGKP-QEEYRRQLGGFGVS---GDLALQFVGSLSGGQKSRVAF 406 (443)
Q Consensus 340 ---~~ig~~~Q~~~~~l~~~~~~~~~~~~~~------~~~~-~~~~~~~L~~~gl~---~~~~~~~~~~LSgGekqRl~l 406 (443)
..++|++|++. +.. .++.+++.... +... ...+.+.+..+++. ....++++..|||||+||++|
T Consensus 85 ~~~~~i~~v~q~~~--l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~l 161 (259)
T PRK14260 85 RLRRQIGMVFQRPN--PFP-MSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCI 161 (259)
T ss_pred hhhhheEEEecccc--cCC-ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHH
Confidence 25899999863 223 56666654211 1111 23456778888874 235678899999999999999
Q ss_pred HHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHcccc
Q psy208 407 ARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKYT 442 (443)
Q Consensus 407 A~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~~ 442 (443)
|||++.+|++|||||||++||+.++..+.+.|.++.
T Consensus 162 aral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~ 197 (259)
T PRK14260 162 ARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLR 197 (259)
T ss_pred HHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999998753
No 257
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=100.00 E-value=2.3e-32 Score=276.63 Aligned_cols=153 Identities=26% Similarity=0.376 Sum_probs=130.2
Q ss_pred EeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcC---------------ceEEEEeccCc
Q psy208 285 EYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR---------------NLKFGYFSQHH 349 (443)
Q Consensus 285 ~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~---------------~~~ig~~~Q~~ 349 (443)
.|+ ++.+|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|.+.+ ...++|++|++
T Consensus 2 ~~~-~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~ 80 (363)
T TIGR01186 2 KTG-GKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQF 80 (363)
T ss_pred ccC-CceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCC
Confidence 464 56799999999999999999999999999999999999999999998854 23699999985
Q ss_pred ccccccchhHHHHHHHh--CCCCC----HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCC
Q psy208 350 VDQLDMNLRCVQLLEAA--FPGKP----QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPT 423 (443)
Q Consensus 350 ~~~l~~~~~~~~~~~~~--~~~~~----~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPT 423 (443)
.+.+..++.+++... ..+.. .+.+.++++.+|+. ...++++.+|||||||||+|||||+.+|++|||||||
T Consensus 81 --~l~~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~-~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~ 157 (363)
T TIGR01186 81 --ALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLE-EYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAF 157 (363)
T ss_pred --cCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCc-hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 355566777766421 11222 34577889999995 5789999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHccc
Q psy208 424 NHLDIETIEALGKAINKY 441 (443)
Q Consensus 424 n~LD~~s~~~l~~~L~~~ 441 (443)
++||+.++..+.+.|.++
T Consensus 158 saLD~~~r~~l~~~l~~l 175 (363)
T TIGR01186 158 SALDPLIRDSMQDELKKL 175 (363)
T ss_pred ccCCHHHHHHHHHHHHHH
Confidence 999999999999998764
No 258
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.98 E-value=4.3e-32 Score=262.49 Aligned_cols=161 Identities=23% Similarity=0.305 Sum_probs=130.5
Q ss_pred EEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCC-----CCCceEEEcC-------------
Q psy208 277 LQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIIS-----PTAGTRTVHR------------- 338 (443)
Q Consensus 277 l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~-----p~~G~i~~~~------------- 338 (443)
-+++||++.|+ ++++|+|+||+|.+|++++|+|+||||||||+++|+|+.+ |++|+|.+.+
T Consensus 6 ~~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 84 (251)
T PRK14244 6 ASVKNLNLWYG-SKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLL 84 (251)
T ss_pred EEeeeEEEEEC-CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHH
Confidence 47899999996 5689999999999999999999999999999999999986 4799998743
Q ss_pred ceEEEEeccCcccccccchhHHHHHHHh--CCCC------CHHHHHHHHhcCCCCh---hhhhccCCCCCHHHHHHHHHH
Q psy208 339 NLKFGYFSQHHVDQLDMNLRCVQLLEAA--FPGK------PQEEYRRQLGGFGVSG---DLALQFVGSLSGGQKSRVAFA 407 (443)
Q Consensus 339 ~~~ig~~~Q~~~~~l~~~~~~~~~~~~~--~~~~------~~~~~~~~L~~~gl~~---~~~~~~~~~LSgGekqRl~lA 407 (443)
...++|++|++. +... ++.+++... .... ....+..+++.+++.. ...++++..||||||||++||
T Consensus 85 ~~~i~~v~q~~~--~~~~-tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~la 161 (251)
T PRK14244 85 RAKVGMVFQKPN--PFPK-SIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIA 161 (251)
T ss_pred hhhEEEEecCcc--cccC-CHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHH
Confidence 124899999863 2222 555555321 1111 1234567788999853 245678999999999999999
Q ss_pred HHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 408 RMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 408 ~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
++++.+|++|||||||++||+.+++.+.+.|.++
T Consensus 162 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~ 195 (251)
T PRK14244 162 RAIAVKPTMLLMDEPCSALDPVATNVIENLIQEL 195 (251)
T ss_pred HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999765
No 259
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.98 E-value=2.2e-32 Score=241.87 Aligned_cols=162 Identities=27% Similarity=0.431 Sum_probs=138.9
Q ss_pred eEEEeeeEEEeCCC---CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcC--------------
Q psy208 276 ILQLSEVNFEYVPG---KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR-------------- 338 (443)
Q Consensus 276 ~l~~~~l~~~y~~~---~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-------------- 338 (443)
+|+++++++..+.+ -.||++|+|.|.+||.++||||+||||||||-+++|+..|++|+|.+.+
T Consensus 6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~ 85 (228)
T COG4181 6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAAL 85 (228)
T ss_pred eeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHh
Confidence 78999999988533 3699999999999999999999999999999999999999999998742
Q ss_pred -ceEEEEeccCcccccccchhHHHHHHH--hCCC----CCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhc
Q psy208 339 -NLKFGYFSQHHVDQLDMNLRCVQLLEA--AFPG----KPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCM 411 (443)
Q Consensus 339 -~~~ig~~~Q~~~~~l~~~~~~~~~~~~--~~~~----~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~ 411 (443)
..++||+||.. .+-++.+.++++.- ...+ .....++.+|..+|+. ..+..+|.+|||||+|||+||||++
T Consensus 86 R~~~vGfVFQSF--~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg-~Rl~HyP~qLSGGEQQRVAiARAfa 162 (228)
T COG4181 86 RARHVGFVFQSF--HLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLG-KRLTHYPAQLSGGEQQRVALARAFA 162 (228)
T ss_pred hccceeEEEEee--eccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcc-cccccCccccCchHHHHHHHHHHhc
Confidence 24699999974 56778888887642 1111 2234578999999996 5778899999999999999999999
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHcc
Q psy208 412 AAPNFLVLDEPTNHLDIETIEALGKAINK 440 (443)
Q Consensus 412 ~~p~lLiLDEPTn~LD~~s~~~l~~~L~~ 440 (443)
..|++|+.||||-+||..+-+.+.+.|-.
T Consensus 163 ~~P~vLfADEPTGNLD~~Tg~~iaDLlF~ 191 (228)
T COG4181 163 GRPDVLFADEPTGNLDRATGDKIADLLFA 191 (228)
T ss_pred CCCCEEeccCCCCCcchhHHHHHHHHHHH
Confidence 99999999999999999999999998754
No 260
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.98 E-value=1.2e-31 Score=294.12 Aligned_cols=162 Identities=28% Similarity=0.465 Sum_probs=137.7
Q ss_pred eEEEeeeEEEeCC-CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-----------eEEE
Q psy208 276 ILQLSEVNFEYVP-GKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-----------LKFG 343 (443)
Q Consensus 276 ~l~~~~l~~~y~~-~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~ig 343 (443)
.|+++||+|+|++ ++++|+|+||+|++|+++||+|+||||||||+|+|+|+++|++|+|.+++. ..+|
T Consensus 451 ~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~ 530 (686)
T TIGR03797 451 AIEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLG 530 (686)
T ss_pred eEEEEEEEEEcCCCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccE
Confidence 5899999999953 467999999999999999999999999999999999999999999988752 3699
Q ss_pred EeccCcccccccchhHHHHHHHhCCCCCHHHHHHHHhcCCCChhhh------h----ccCCCCCHHHHHHHHHHHHhccC
Q psy208 344 YFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLA------L----QFVGSLSGGQKSRVAFARMCMAA 413 (443)
Q Consensus 344 ~~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~------~----~~~~~LSgGekqRl~lA~al~~~ 413 (443)
|++|++. + ...|+.+++....+ .+++++.+.++..++..... + ....+||||||||++||||++++
T Consensus 531 ~v~Q~~~--l-f~gTI~eNi~~~~~-~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~ 606 (686)
T TIGR03797 531 VVLQNGR--L-MSGSIFENIAGGAP-LTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRK 606 (686)
T ss_pred EEccCCc--c-CcccHHHHHhcCCC-CCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcC
Confidence 9999974 2 24578888865444 56788888888888753221 1 23457999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 414 PNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 414 p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
|++|||||||++||+.+.+.+.+.|.++
T Consensus 607 p~iLiLDEpTS~LD~~te~~i~~~L~~~ 634 (686)
T TIGR03797 607 PRILLFDEATSALDNRTQAIVSESLERL 634 (686)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999998764
No 261
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.98 E-value=3.7e-32 Score=289.16 Aligned_cols=162 Identities=24% Similarity=0.347 Sum_probs=132.7
Q ss_pred EEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCC--CCCCceEEEcC----------------
Q psy208 277 LQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGII--SPTAGTRTVHR---------------- 338 (443)
Q Consensus 277 l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~--~p~~G~i~~~~---------------- 338 (443)
|+++|++++|+ ++++|+|+||+|.+|++++|+||||||||||+|+|+|++ +|++|+|.+..
T Consensus 1 l~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g 79 (520)
T TIGR03269 1 IEVKNLTKKFD-GKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVG 79 (520)
T ss_pred CEEEEEEEEEC-CeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccccc
Confidence 57899999995 568999999999999999999999999999999999997 79999998741
Q ss_pred ----------------------------ceEEEEeccCcccccccchhHHHHHHHh--CCCCC----HHHHHHHHhcCCC
Q psy208 339 ----------------------------NLKFGYFSQHHVDQLDMNLRCVQLLEAA--FPGKP----QEEYRRQLGGFGV 384 (443)
Q Consensus 339 ----------------------------~~~ig~~~Q~~~~~l~~~~~~~~~~~~~--~~~~~----~~~~~~~L~~~gl 384 (443)
...++|++|++. .+....++.+++... ..... ...+.+++..+|+
T Consensus 80 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~-~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl 158 (520)
T TIGR03269 80 EPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTF-ALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQL 158 (520)
T ss_pred cccccccccccccchhhhccCHHHHHHhhhcEEEEecccc-ccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC
Confidence 124899999732 233334555555321 11111 2456788999999
Q ss_pred ChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 385 SGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 385 ~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
. +..++++.+|||||||||+||+||+.+|++|||||||++||+.+++.+.+.|.++
T Consensus 159 ~-~~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l 214 (520)
T TIGR03269 159 S-HRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEA 214 (520)
T ss_pred h-hhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHH
Confidence 6 5678899999999999999999999999999999999999999999999888765
No 262
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.98 E-value=6e-32 Score=240.07 Aligned_cols=116 Identities=47% Similarity=0.792 Sum_probs=109.2
Q ss_pred EEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCceEEEEeccCcccccccc
Q psy208 277 LQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMN 356 (443)
Q Consensus 277 l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ig~~~Q~~~~~l~~~ 356 (443)
|+++|+++.|++ .++++++||++++|++++|+|+||||||||+++|+|+++|++|+|.+++...++|++|
T Consensus 1 l~~~~l~~~~~~-~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~~--------- 70 (144)
T cd03221 1 IELENLSKTYGG-KLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQ--------- 70 (144)
T ss_pred CEEEEEEEEECC-ceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEcc---------
Confidence 478999999964 5799999999999999999999999999999999999999999999987777888887
Q ss_pred hhHHHHHHHhCCCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHH
Q psy208 357 LRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGK 436 (443)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~ 436 (443)
||+||+||++|||+++.+|+++||||||++||+.++..+.+
T Consensus 71 ---------------------------------------lS~G~~~rv~laral~~~p~illlDEP~~~LD~~~~~~l~~ 111 (144)
T cd03221 71 ---------------------------------------LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEE 111 (144)
T ss_pred ---------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999
Q ss_pred HHccc
Q psy208 437 AINKY 441 (443)
Q Consensus 437 ~L~~~ 441 (443)
.|+++
T Consensus 112 ~l~~~ 116 (144)
T cd03221 112 ALKEY 116 (144)
T ss_pred HHHHc
Confidence 98764
No 263
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.98 E-value=7.8e-32 Score=260.95 Aligned_cols=164 Identities=24% Similarity=0.305 Sum_probs=131.9
Q ss_pred CeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCC--C---CCceEEEcC-----------
Q psy208 275 PILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIIS--P---TAGTRTVHR----------- 338 (443)
Q Consensus 275 ~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~--p---~~G~i~~~~----------- 338 (443)
++|+++|++++|+ ++.+|+|+||+|.+|++++|+||||||||||+++|+|+.+ | ++|+|.+.+
T Consensus 5 ~~i~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 83 (253)
T PRK14261 5 IILSTKNLNLWYG-EKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVV 83 (253)
T ss_pred ceEEEeeeEEEEC-CeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchh
Confidence 5799999999995 5689999999999999999999999999999999999975 3 489987743
Q ss_pred --ceEEEEeccCcccccccchhHHHHHHHh--CCC-CC----HHHHHHHHhcCCCCh---hhhhccCCCCCHHHHHHHHH
Q psy208 339 --NLKFGYFSQHHVDQLDMNLRCVQLLEAA--FPG-KP----QEEYRRQLGGFGVSG---DLALQFVGSLSGGQKSRVAF 406 (443)
Q Consensus 339 --~~~ig~~~Q~~~~~l~~~~~~~~~~~~~--~~~-~~----~~~~~~~L~~~gl~~---~~~~~~~~~LSgGekqRl~l 406 (443)
...++|++|++. +.. .++.+++... ... .. ...+.+++..+++.. ...++++..||||||||++|
T Consensus 84 ~~~~~i~~~~q~~~--~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~l 160 (253)
T PRK14261 84 ALRRKIGMVFQRPN--PFP-KSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCI 160 (253)
T ss_pred hhhceEEEEecCCc--cCc-ccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHHH
Confidence 124899999863 222 3666665421 111 11 224556777777632 34678999999999999999
Q ss_pred HHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHcccc
Q psy208 407 ARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKYT 442 (443)
Q Consensus 407 A~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~~ 442 (443)
||+++.+|++|||||||++||+.+++.+.+.|.++.
T Consensus 161 aral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~ 196 (253)
T PRK14261 161 ARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLK 196 (253)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999998753
No 264
>KOG0057|consensus
Probab=99.98 E-value=5.7e-32 Score=275.81 Aligned_cols=161 Identities=27% Similarity=0.403 Sum_probs=141.5
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcC-----------ceEEEE
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR-----------NLKFGY 344 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~ig~ 344 (443)
.|+++||+|+|++++++|+++||+|++|+++||+|+|||||||++|+|.+++. ++|+|.+++ +..|||
T Consensus 351 ~I~F~dV~f~y~~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig~ 429 (591)
T KOG0057|consen 351 SIEFDDVHFSYGPKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIGV 429 (591)
T ss_pred cEEEEeeEEEeCCCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhheeE
Confidence 49999999999877779999999999999999999999999999999999999 999999875 235999
Q ss_pred eccCcccccccchhHHHHHHHhCCCCCHHHHHHHHhcCCCChhh----------hhccCCCCCHHHHHHHHHHHHhccCC
Q psy208 345 FSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDL----------ALQFVGSLSGGQKSRVAFARMCMAAP 414 (443)
Q Consensus 345 ~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~----------~~~~~~~LSgGekqRl~lA~al~~~p 414 (443)
+||+.. -.+.|++.++....+..+.+++.+..+++|+.+-. ...+...|||||||||+||||++.+|
T Consensus 430 VPQd~~---LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda 506 (591)
T KOG0057|consen 430 VPQDSV---LFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDA 506 (591)
T ss_pred eCCccc---ccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCC
Confidence 999863 23568888888777778888999999999885322 22345589999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHcc
Q psy208 415 NFLVLDEPTNHLDIETIEALGKAINK 440 (443)
Q Consensus 415 ~lLiLDEPTn~LD~~s~~~l~~~L~~ 440 (443)
+|+++||||++||.++...+.+.+.+
T Consensus 507 ~Il~~DEaTS~LD~~TE~~i~~~i~~ 532 (591)
T KOG0057|consen 507 PILLLDEATSALDSETEREILDMIMD 532 (591)
T ss_pred CeEEecCcccccchhhHHHHHHHHHH
Confidence 99999999999999999999998865
No 265
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.98 E-value=3.7e-32 Score=258.81 Aligned_cols=160 Identities=25% Similarity=0.290 Sum_probs=128.0
Q ss_pred EEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCceEEEEeccCcccccccc
Q psy208 277 LQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMN 356 (443)
Q Consensus 277 l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ig~~~Q~~~~~l~~~ 356 (443)
+.++++++.|+ ++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+.+.. +.+.... ..+.+.
T Consensus 23 l~~~~~~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~-~~~~~~~--~~~~~~ 98 (224)
T cd03220 23 LGILGRKGEVG-EFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRV-SSLLGLG--GGFNPE 98 (224)
T ss_pred hhhhhhhhhcC-CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEE-chhhccc--ccCCCC
Confidence 78899999996 5789999999999999999999999999999999999999999999886532 2111111 122334
Q ss_pred hhHHHHHHHh--CCCCC----HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCCHHH
Q psy208 357 LRCVQLLEAA--FPGKP----QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIET 430 (443)
Q Consensus 357 ~~~~~~~~~~--~~~~~----~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD~~s 430 (443)
.++.+++... ..... ...+..++..+++. +..++++.+||||||||++|||+++.+|++|||||||++||+.+
T Consensus 99 ~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~gLD~~~ 177 (224)
T cd03220 99 LTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELG-DFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAF 177 (224)
T ss_pred CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh-hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence 4555555321 11111 22456678888885 56788999999999999999999999999999999999999999
Q ss_pred HHHHHHHHccc
Q psy208 431 IEALGKAINKY 441 (443)
Q Consensus 431 ~~~l~~~L~~~ 441 (443)
+..+.+.|.++
T Consensus 178 ~~~~~~~l~~~ 188 (224)
T cd03220 178 QEKCQRRLREL 188 (224)
T ss_pred HHHHHHHHHHH
Confidence 99999998765
No 266
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.98 E-value=4.4e-32 Score=275.93 Aligned_cols=158 Identities=24% Similarity=0.284 Sum_probs=132.1
Q ss_pred eeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-------------------e
Q psy208 280 SEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-------------------L 340 (443)
Q Consensus 280 ~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-------------------~ 340 (443)
.++.+.|+ ...+|+|+||+|++|++++|+|+||||||||+|+|+|+++|++|+|.+.+. .
T Consensus 28 ~~~~~~~g-~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~ 106 (382)
T TIGR03415 28 EEILDETG-LVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTH 106 (382)
T ss_pred HHHHHhhC-CEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcC
Confidence 34556664 567999999999999999999999999999999999999999999988641 2
Q ss_pred EEEEeccCcccccccchhHHHHHHHh--CCCCC----HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCC
Q psy208 341 KFGYFSQHHVDQLDMNLRCVQLLEAA--FPGKP----QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAP 414 (443)
Q Consensus 341 ~ig~~~Q~~~~~l~~~~~~~~~~~~~--~~~~~----~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p 414 (443)
.++|++|++. +.+..++.+++... ..... ...+.++++.+|+. +..++++.+|||||||||+|||+|+.+|
T Consensus 107 ~i~~vfQ~~~--l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~-~~~~~~~~~LSgGq~QRV~LARALa~~P 183 (382)
T TIGR03415 107 RVSMVFQKFA--LMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLA-QWADKKPGELSGGMQQRVGLARAFAMDA 183 (382)
T ss_pred CEEEEECCCc--CCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc-hhhcCChhhCCHHHHHHHHHHHHHhcCC
Confidence 5999999863 45556777776432 11111 24567889999996 5678999999999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 415 NFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 415 ~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
++|||||||++||+.++..+.+.|.++
T Consensus 184 ~ILLlDEPts~LD~~~r~~l~~~L~~l 210 (382)
T TIGR03415 184 DILLMDEPFSALDPLIRTQLQDELLEL 210 (382)
T ss_pred CEEEEECCCccCCHHHHHHHHHHHHHH
Confidence 999999999999999999999998764
No 267
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.98 E-value=7.4e-32 Score=246.11 Aligned_cols=130 Identities=34% Similarity=0.543 Sum_probs=110.5
Q ss_pred EEEeeeEEEeCCC-CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-----------eEEEE
Q psy208 277 LQLSEVNFEYVPG-KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-----------LKFGY 344 (443)
Q Consensus 277 l~~~~l~~~y~~~-~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~ig~ 344 (443)
|+++|+++.|++. .++|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+. ..++|
T Consensus 1 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (171)
T cd03228 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAY 80 (171)
T ss_pred CEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEE
Confidence 4789999999643 27999999999999999999999999999999999999999999987542 24778
Q ss_pred eccCcccccccchhHHHHHHHhCCCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCC
Q psy208 345 FSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTN 424 (443)
Q Consensus 345 ~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn 424 (443)
++|++. +.. .++.+++ ||||||||++||++++.+|++|||||||+
T Consensus 81 ~~~~~~--~~~-~t~~e~l--------------------------------LS~G~~~rl~la~al~~~p~llllDEP~~ 125 (171)
T cd03228 81 VPQDPF--LFS-GTIRENI--------------------------------LSGGQRQRIAIARALLRDPPILILDEATS 125 (171)
T ss_pred EcCCch--hcc-chHHHHh--------------------------------hCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 887652 211 2322221 99999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHccc
Q psy208 425 HLDIETIEALGKAINKY 441 (443)
Q Consensus 425 ~LD~~s~~~l~~~L~~~ 441 (443)
+||+.+++.+.+.|.++
T Consensus 126 gLD~~~~~~l~~~l~~~ 142 (171)
T cd03228 126 ALDPETEALILEALRAL 142 (171)
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 99999999999999765
No 268
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.98 E-value=5.7e-32 Score=245.12 Aligned_cols=128 Identities=31% Similarity=0.461 Sum_probs=104.1
Q ss_pred EEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCceEEEEeccCcccccccc
Q psy208 277 LQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMN 356 (443)
Q Consensus 277 l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ig~~~Q~~~~~l~~~ 356 (443)
|+++|++++|+ ++++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.+.+. .+. . ..
T Consensus 1 l~~~~l~~~~~-~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~-~~~---~-----~~-- 68 (163)
T cd03216 1 LELRGITKRFG-GVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGK-EVS---F-----AS-- 68 (163)
T ss_pred CEEEEEEEEEC-CeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCE-ECC---c-----CC--
Confidence 47899999996 468999999999999999999999999999999999999999999977542 111 0 00
Q ss_pred hhHHHHHHHhCCCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHH
Q psy208 357 LRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGK 436 (443)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~ 436 (443)
.. ...+ ..+++ +.+|||||+||++|||+++.+|++|||||||++||+.+++.+.+
T Consensus 69 --~~------------~~~~---~~i~~--------~~qLS~G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~ 123 (163)
T cd03216 69 --PR------------DARR---AGIAM--------VYQLSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFK 123 (163)
T ss_pred --HH------------HHHh---cCeEE--------EEecCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHH
Confidence 00 0000 01111 11299999999999999999999999999999999999999999
Q ss_pred HHccc
Q psy208 437 AINKY 441 (443)
Q Consensus 437 ~L~~~ 441 (443)
.|+++
T Consensus 124 ~l~~~ 128 (163)
T cd03216 124 VIRRL 128 (163)
T ss_pred HHHHH
Confidence 99876
No 269
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.98 E-value=1.6e-31 Score=294.01 Aligned_cols=163 Identities=26% Similarity=0.379 Sum_probs=137.6
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-----------eEEEE
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-----------LKFGY 344 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~ig~ 344 (443)
-|+++||+|+|++++++|+|+||+|++|+++||+|+||||||||+|+|+|+++|++|+|.+++. ..+||
T Consensus 473 ~I~~~~vsf~y~~~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~ 552 (708)
T TIGR01193 473 DIVINDVSYSYGYGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINY 552 (708)
T ss_pred cEEEEEEEEEcCCCCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHheEE
Confidence 5899999999975578999999999999999999999999999999999999999999998752 36999
Q ss_pred eccCcccccccchhHHHHHHHh-CCCCCHHHHHHHHhcCCCChhh----------hhccCCCCCHHHHHHHHHHHHhccC
Q psy208 345 FSQHHVDQLDMNLRCVQLLEAA-FPGKPQEEYRRQLGGFGVSGDL----------ALQFVGSLSGGQKSRVAFARMCMAA 413 (443)
Q Consensus 345 ~~Q~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~L~~~gl~~~~----------~~~~~~~LSgGekqRl~lA~al~~~ 413 (443)
++|++. + ...|+.+++... .+..+++++.+.+...++.... .......||||||||++||||++++
T Consensus 553 v~Q~~~--l-f~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~ 629 (708)
T TIGR01193 553 LPQEPY--I-FSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTD 629 (708)
T ss_pred EecCce--e-hhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhC
Confidence 999973 2 245888888654 2455677777777777664211 1234467999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 414 PNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 414 p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
|++|||||||++||.++.+.+.+.|.++
T Consensus 630 p~iliLDE~Ts~LD~~te~~i~~~L~~~ 657 (708)
T TIGR01193 630 SKVLILDESTSNLDTITEKKIVNNLLNL 657 (708)
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999998764
No 270
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.98 E-value=1.5e-31 Score=294.33 Aligned_cols=162 Identities=26% Similarity=0.423 Sum_probs=137.0
Q ss_pred eEEEeeeEEEeCC-CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcC-----------ceEEE
Q psy208 276 ILQLSEVNFEYVP-GKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR-----------NLKFG 343 (443)
Q Consensus 276 ~l~~~~l~~~y~~-~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~ig 343 (443)
.|+++||+|+|++ ++++|+|+||+|++|+++||+|+||||||||+|+|+|+++|++|+|.+++ +..+|
T Consensus 477 ~I~~~~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~ 556 (710)
T TIGR03796 477 YVELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVA 556 (710)
T ss_pred eEEEEEEEEecCCCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhhee
Confidence 5999999999974 36799999999999999999999999999999999999999999999864 23699
Q ss_pred EeccCcccccccchhHHHHHHHhCCCCCHHHHHHHHhcCCCChhh----------hhccCCCCCHHHHHHHHHHHHhccC
Q psy208 344 YFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDL----------ALQFVGSLSGGQKSRVAFARMCMAA 413 (443)
Q Consensus 344 ~~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~----------~~~~~~~LSgGekqRl~lA~al~~~ 413 (443)
|++|++. + .+.|+.+++....+..+++++.+.+...++.... ......+||||||||++||||++++
T Consensus 557 ~v~Q~~~--l-f~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~ 633 (710)
T TIGR03796 557 MVDQDIF--L-FEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRN 633 (710)
T ss_pred EEecCCh--h-hhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhC
Confidence 9999973 2 2457888886544455677888888877764321 1123467999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHcc
Q psy208 414 PNFLVLDEPTNHLDIETIEALGKAINK 440 (443)
Q Consensus 414 p~lLiLDEPTn~LD~~s~~~l~~~L~~ 440 (443)
|++|||||||++||..+...+.+.|.+
T Consensus 634 p~iliLDEptS~LD~~te~~i~~~l~~ 660 (710)
T TIGR03796 634 PSILILDEATSALDPETEKIIDDNLRR 660 (710)
T ss_pred CCEEEEECccccCCHHHHHHHHHHHHh
Confidence 999999999999999999999998875
No 271
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.98 E-value=2.2e-32 Score=254.37 Aligned_cols=163 Identities=25% Similarity=0.437 Sum_probs=141.9
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-------eEEEEeccC
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-------LKFGYFSQH 348 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-------~~ig~~~Q~ 348 (443)
.|++++|+++|+ ++.+++|+||++++|++.|++|+|||||||.+|+|.|++.|++|+|.+.+. .+|||+|.+
T Consensus 2 ~L~ie~vtK~Fg-~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~~~~rIGyLPEE 80 (300)
T COG4152 2 ALEIEGVTKSFG-DKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIGYLPEE 80 (300)
T ss_pred ceEEecchhccC-ceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhhhhhhcccChhh
Confidence 589999999995 688999999999999999999999999999999999999999999998752 379999987
Q ss_pred cccccccchhHHHHHHH--hCCCCCH----HHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCC
Q psy208 349 HVDQLDMNLRCVQLLEA--AFPGKPQ----EEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEP 422 (443)
Q Consensus 349 ~~~~l~~~~~~~~~~~~--~~~~~~~----~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEP 422 (443)
. .+.+..++.+.+.. ...+... ..+..+|+++++. ....+++.+||.|++|++.+..+++++|+++|||||
T Consensus 81 R--GLy~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~-~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEP 157 (300)
T COG4152 81 R--GLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIV-GKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEP 157 (300)
T ss_pred h--ccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcccc-ccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCC
Confidence 4 46777787776542 2334433 3567789999986 467789999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHcccc
Q psy208 423 TNHLDIETIEALGKAINKYT 442 (443)
Q Consensus 423 Tn~LD~~s~~~l~~~L~~~~ 442 (443)
++||||.+.+.|.+++.+++
T Consensus 158 FSGLDPVN~elLk~~I~~lk 177 (300)
T COG4152 158 FSGLDPVNVELLKDAIFELK 177 (300)
T ss_pred ccCCChhhHHHHHHHHHHHH
Confidence 99999999999999998764
No 272
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.98 E-value=6.7e-32 Score=260.52 Aligned_cols=154 Identities=26% Similarity=0.349 Sum_probs=124.7
Q ss_pred EEeCCCCceeeeeeEEEe-----CCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCceEEEEeccCcccccccchh
Q psy208 284 FEYVPGKPILTNVCLGAT-----LESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLR 358 (443)
Q Consensus 284 ~~y~~~~~il~~vsl~i~-----~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ig~~~Q~~~~~l~~~~~ 358 (443)
|+|++....+.+++|++. +|++++|+||||||||||+++|+|+++|++|+|.+.+. .++|++|++.. ....+
T Consensus 1 ~~y~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~-~i~~~~q~~~~--~~~~t 77 (246)
T cd03237 1 YTYPTMKKTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELD-TVSYKPQYIKA--DYEGT 77 (246)
T ss_pred CCCcccccccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCc-eEEEecccccC--CCCCC
Confidence 345544557777777776 79999999999999999999999999999999988764 79999998632 23446
Q ss_pred HHHHHHHhCCC--CCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHH
Q psy208 359 CVQLLEAAFPG--KPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGK 436 (443)
Q Consensus 359 ~~~~~~~~~~~--~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~ 436 (443)
+.+++...... .......+++..+++. ...++++.+|||||||||+||++|+.+|++|||||||++||+.++..+.+
T Consensus 78 v~e~l~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~ 156 (246)
T cd03237 78 VRDLLSSITKDFYTHPYFKTEIAKPLQIE-QILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASK 156 (246)
T ss_pred HHHHHHHHhhhccccHHHHHHHHHHcCCH-HHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH
Confidence 66655422111 1123456788889986 56789999999999999999999999999999999999999999999999
Q ss_pred HHccc
Q psy208 437 AINKY 441 (443)
Q Consensus 437 ~L~~~ 441 (443)
.|+++
T Consensus 157 ~l~~~ 161 (246)
T cd03237 157 VIRRF 161 (246)
T ss_pred HHHHH
Confidence 98875
No 273
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.98 E-value=1.2e-31 Score=261.03 Aligned_cols=163 Identities=21% Similarity=0.288 Sum_probs=131.9
Q ss_pred CeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCC-----CceEEEcC-----------
Q psy208 275 PILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPT-----AGTRTVHR----------- 338 (443)
Q Consensus 275 ~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~-----~G~i~~~~----------- 338 (443)
++|+++|++++|+ ++.+|+|+||+|++|++++|+|+||||||||+++|+|+++|+ +|+|.+.+
T Consensus 6 ~~l~~~nl~~~~~-~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~ 84 (261)
T PRK14258 6 PAIKVNNLSFYYD-TQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLN 84 (261)
T ss_pred ceEEEeeEEEEeC-CeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchH
Confidence 3799999999996 457999999999999999999999999999999999999985 78876643
Q ss_pred --ceEEEEeccCcccccccchhHHHHHHHh--CCCC-C----HHHHHHHHhcCCCCh---hhhhccCCCCCHHHHHHHHH
Q psy208 339 --NLKFGYFSQHHVDQLDMNLRCVQLLEAA--FPGK-P----QEEYRRQLGGFGVSG---DLALQFVGSLSGGQKSRVAF 406 (443)
Q Consensus 339 --~~~ig~~~Q~~~~~l~~~~~~~~~~~~~--~~~~-~----~~~~~~~L~~~gl~~---~~~~~~~~~LSgGekqRl~l 406 (443)
...++|++|++. +.. .++.+++... .... . ...+..+++.+++.. ...++++.+|||||+||++|
T Consensus 85 ~~~~~i~~~~q~~~--l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~l 161 (261)
T PRK14258 85 RLRRQVSMVHPKPN--LFP-MSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCI 161 (261)
T ss_pred HhhccEEEEecCCc--cCc-ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHH
Confidence 124899999853 333 4666665421 1111 1 234566788888632 34678899999999999999
Q ss_pred HHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 407 ARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 407 A~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
|++++.+|++|||||||++||+.+++.+.+.|.++
T Consensus 162 aral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l 196 (261)
T PRK14258 162 ARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSL 196 (261)
T ss_pred HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998764
No 274
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.98 E-value=3.2e-31 Score=284.99 Aligned_cols=163 Identities=27% Similarity=0.379 Sum_probs=139.7
Q ss_pred CeEEEeeeEEEeCCC-CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-----------eEE
Q psy208 275 PILQLSEVNFEYVPG-KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-----------LKF 342 (443)
Q Consensus 275 ~~l~~~~l~~~y~~~-~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~i 342 (443)
..|+++||+|+|+++ +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++. ..+
T Consensus 337 ~~i~~~~v~f~y~~~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i 416 (574)
T PRK11160 337 VSLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAI 416 (574)
T ss_pred CeEEEEEEEEECCCCCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhhe
Confidence 359999999999653 57999999999999999999999999999999999999999999998652 259
Q ss_pred EEeccCcccccccchhHHHHHHHhCCCCCHHHHHHHHhcCCCChhhhhc----------cCCCCCHHHHHHHHHHHHhcc
Q psy208 343 GYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQ----------FVGSLSGGQKSRVAFARMCMA 412 (443)
Q Consensus 343 g~~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~----------~~~~LSgGekqRl~lA~al~~ 412 (443)
+|++|++. +. +.++.+++....+..+++++.+.++.+++.. ..++ ....||||||||++|||++++
T Consensus 417 ~~v~Q~~~--lf-~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~-~i~~p~GldT~vge~g~~LSgGqrqRialARall~ 492 (574)
T PRK11160 417 SVVSQRVH--LF-SATLRDNLLLAAPNASDEALIEVLQQVGLEK-LLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLH 492 (574)
T ss_pred eEEcccch--hh-cccHHHHhhcCCCccCHHHHHHHHHHcCCHH-HHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhc
Confidence 99999973 22 3577888865545567788888999988853 2222 456799999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 413 APNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 413 ~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
+|++|||||||++||+++.+.+.+.|.++
T Consensus 493 ~~~ililDE~ts~lD~~t~~~i~~~l~~~ 521 (574)
T PRK11160 493 DAPLLLLDEPTEGLDAETERQILELLAEH 521 (574)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999998765
No 275
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.98 E-value=6.7e-32 Score=257.86 Aligned_cols=150 Identities=21% Similarity=0.331 Sum_probs=122.0
Q ss_pred eeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCC----CCceEEEcC---------ceEEEEeccCcccccccchh
Q psy208 292 ILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISP----TAGTRTVHR---------NLKFGYFSQHHVDQLDMNLR 358 (443)
Q Consensus 292 il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p----~~G~i~~~~---------~~~ig~~~Q~~~~~l~~~~~ 358 (443)
+|+|+||+|.+|++++|+||||||||||+|+|+|+++| ++|+|.+.+ ...++|++|++...+....+
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t 80 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFT 80 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccC
Confidence 57899999999999999999999999999999999999 899998754 13699999986322333344
Q ss_pred HHHHHHH---hCCC---CCHHHHHHHHhcCCCCh--hhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCCHHH
Q psy208 359 CVQLLEA---AFPG---KPQEEYRRQLGGFGVSG--DLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIET 430 (443)
Q Consensus 359 ~~~~~~~---~~~~---~~~~~~~~~L~~~gl~~--~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD~~s 430 (443)
+.+++.. .... .....+.+++..+++.. ...++++.+|||||||||+||++++.+|++|||||||++||+.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~~ 160 (230)
T TIGR02770 81 MGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVN 160 (230)
T ss_pred HHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHH
Confidence 4443321 1111 11234778899999863 45788999999999999999999999999999999999999999
Q ss_pred HHHHHHHHccc
Q psy208 431 IEALGKAINKY 441 (443)
Q Consensus 431 ~~~l~~~L~~~ 441 (443)
++.+.+.|.++
T Consensus 161 ~~~l~~~l~~~ 171 (230)
T TIGR02770 161 QARVLKLLREL 171 (230)
T ss_pred HHHHHHHHHHH
Confidence 99999988764
No 276
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.98 E-value=3.4e-31 Score=285.94 Aligned_cols=162 Identities=24% Similarity=0.327 Sum_probs=136.8
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-----------eEEEE
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-----------LKFGY 344 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~ig~ 344 (443)
-++++|++|+|++++++|+|+||+|++|++++|+|+||||||||+|+|+|+++|++|+|.+++. ..++|
T Consensus 340 ~i~~~~v~f~y~~~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~ 419 (592)
T PRK10790 340 RIDIDNVSFAYRDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAM 419 (592)
T ss_pred eEEEEEEEEEeCCCCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheEE
Confidence 4899999999975567999999999999999999999999999999999999999999988652 35999
Q ss_pred eccCcccccccchhHHHHHHHhCCCCCHHHHHHHHhcCCCChhh----------hhccCCCCCHHHHHHHHHHHHhccCC
Q psy208 345 FSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDL----------ALQFVGSLSGGQKSRVAFARMCMAAP 414 (443)
Q Consensus 345 ~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~----------~~~~~~~LSgGekqRl~lA~al~~~p 414 (443)
++|++. +. +.|+.+++.... ..+++++.+.+...|+.... .......||||||||++||||++.+|
T Consensus 420 v~Q~~~--lF-~~Ti~~NI~~~~-~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~ 495 (592)
T PRK10790 420 VQQDPV--VL-ADTFLANVTLGR-DISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTP 495 (592)
T ss_pred EccCCc--cc-cchHHHHHHhCC-CCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCC
Confidence 999974 22 347788876543 45677888888888764211 11234579999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 415 NFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 415 ~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
++|||||||++||+++.+.+.+.|.++
T Consensus 496 ~illlDEpts~LD~~t~~~i~~~l~~~ 522 (592)
T PRK10790 496 QILILDEATANIDSGTEQAIQQALAAV 522 (592)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 999999999999999999999998764
No 277
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.97 E-value=1.2e-31 Score=249.75 Aligned_cols=141 Identities=29% Similarity=0.414 Sum_probs=118.3
Q ss_pred CeEEEeeeEEEeCC-----CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCC--CCCCceEEEcC--------c
Q psy208 275 PILQLSEVNFEYVP-----GKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGII--SPTAGTRTVHR--------N 339 (443)
Q Consensus 275 ~~l~~~~l~~~y~~-----~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~--~p~~G~i~~~~--------~ 339 (443)
+.|+++||+++|++ .+++|+++||+|.+|++++|+||||||||||+++|+|++ +|++|+|.+.+ .
T Consensus 2 ~~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~ 81 (194)
T cd03213 2 VTLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFR 81 (194)
T ss_pred cEEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHhhh
Confidence 35899999999964 267999999999999999999999999999999999999 99999998753 2
Q ss_pred eEEEEeccCcccccccchhHHHHHHHhCCCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEE
Q psy208 340 LKFGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVL 419 (443)
Q Consensus 340 ~~ig~~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiL 419 (443)
..++|++|++. +....++.+++... .. ...|||||+||++|||+++.+|++|||
T Consensus 82 ~~i~~~~q~~~--~~~~~t~~~~i~~~-------------~~-----------~~~LS~G~~qrv~laral~~~p~illl 135 (194)
T cd03213 82 KIIGYVPQDDI--LHPTLTVRETLMFA-------------AK-----------LRGLSGGERKRVSIALELVSNPSLLFL 135 (194)
T ss_pred heEEEccCccc--CCCCCcHHHHHHHH-------------HH-----------hccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 35899999853 33344555544210 00 017999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHccc
Q psy208 420 DEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 420 DEPTn~LD~~s~~~l~~~L~~~ 441 (443)
||||++||+.+++.+.+.|.++
T Consensus 136 DEP~~~LD~~~~~~l~~~l~~~ 157 (194)
T cd03213 136 DEPTSGLDSSSALQVMSLLRRL 157 (194)
T ss_pred eCCCcCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999875
No 278
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.97 E-value=7.8e-32 Score=284.72 Aligned_cols=159 Identities=23% Similarity=0.284 Sum_probs=133.2
Q ss_pred EeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc------------eEEEEec
Q psy208 279 LSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN------------LKFGYFS 346 (443)
Q Consensus 279 ~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------------~~ig~~~ 346 (443)
++|++++|+ ++++|+|+||+|.+|++++|+||||||||||+|+|+|+++|++|+|.+.+. ..++|++
T Consensus 1 ~~nl~~~~~-~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~ 79 (491)
T PRK10982 1 MSNISKSFP-GVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVH 79 (491)
T ss_pred CCceEEEeC-CEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEe
Confidence 478999996 568999999999999999999999999999999999999999999987542 3589999
Q ss_pred cCcccccccchhHHHHHHHhC---CC--CC----HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeE
Q psy208 347 QHHVDQLDMNLRCVQLLEAAF---PG--KP----QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFL 417 (443)
Q Consensus 347 Q~~~~~l~~~~~~~~~~~~~~---~~--~~----~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lL 417 (443)
|++. +....++.+++.... .. .. .+.+.+++..+++. ...++++.+|||||||||+||++|+.+|++|
T Consensus 80 q~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGq~qrv~lA~al~~~p~ll 156 (491)
T PRK10982 80 QELN--LVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDID-IDPRAKVATLSVSQMQMIEIAKAFSYNAKIV 156 (491)
T ss_pred cccc--cccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCC-CCccCchhhCCHHHHHHHHHHHHHHhCCCEE
Confidence 9863 344556666654211 11 01 23467788999986 4578899999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHccc
Q psy208 418 VLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 418 iLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
||||||++||+.+++.|.+.|.++
T Consensus 157 lLDEPt~~LD~~~~~~l~~~l~~l 180 (491)
T PRK10982 157 IMDEPTSSLTEKEVNHLFTIIRKL 180 (491)
T ss_pred EEeCCCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999998765
No 279
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.97 E-value=2.3e-31 Score=286.67 Aligned_cols=163 Identities=23% Similarity=0.293 Sum_probs=136.2
Q ss_pred eEEEeeeEEEeCCC-CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-----------eEEE
Q psy208 276 ILQLSEVNFEYVPG-KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-----------LKFG 343 (443)
Q Consensus 276 ~l~~~~l~~~y~~~-~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~ig 343 (443)
.++++||+|+|+++ +++|+|+||+|++|+++||+|+||||||||+++|+|+++|++|+|.+++. ..++
T Consensus 341 ~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~ 420 (582)
T PRK11176 341 DIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVA 420 (582)
T ss_pred eEEEEEEEEecCCCCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhce
Confidence 49999999999753 67999999999999999999999999999999999999999999998652 3689
Q ss_pred EeccCcccccccchhHHHHHHHhCCC-CCHHHHHHHHhcCCCChhh------hhc----cCCCCCHHHHHHHHHHHHhcc
Q psy208 344 YFSQHHVDQLDMNLRCVQLLEAAFPG-KPQEEYRRQLGGFGVSGDL------ALQ----FVGSLSGGQKSRVAFARMCMA 412 (443)
Q Consensus 344 ~~~Q~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~L~~~gl~~~~------~~~----~~~~LSgGekqRl~lA~al~~ 412 (443)
|++|++. + .+.|+.+++....+. .+++++.+.+...++.... .+. ...+||||||||++||||+++
T Consensus 421 ~v~Q~~~--l-f~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~ 497 (582)
T PRK11176 421 LVSQNVH--L-FNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLR 497 (582)
T ss_pred EEccCce--e-ecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHh
Confidence 9999963 2 245778888643232 4677888888877764211 122 235699999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 413 APNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 413 ~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
+|++|||||||++||+++...+.+.|.+.
T Consensus 498 ~~~ililDEptsaLD~~t~~~i~~~l~~~ 526 (582)
T PRK11176 498 DSPILILDEATSALDTESERAIQAALDEL 526 (582)
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999998764
No 280
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.97 E-value=1.2e-31 Score=256.20 Aligned_cols=146 Identities=30% Similarity=0.376 Sum_probs=121.6
Q ss_pred eeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc------eEEEEeccCcccccccchhHHHHHHHh
Q psy208 293 LTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN------LKFGYFSQHHVDQLDMNLRCVQLLEAA 366 (443)
Q Consensus 293 l~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------~~ig~~~Q~~~~~l~~~~~~~~~~~~~ 366 (443)
|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+. ...+|++|++. +....++.+++...
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~--l~~~~tv~e~l~~~ 78 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVFQNYS--LLPWLTVRENIALA 78 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhheEEecCcc--cCCCCCHHHHHHHH
Confidence 57899999999999999999999999999999999999999988642 13589999863 44445666665421
Q ss_pred ----CCCCC----HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHH
Q psy208 367 ----FPGKP----QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAI 438 (443)
Q Consensus 367 ----~~~~~----~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L 438 (443)
..... ...+..++..+++. +..++++..||||||||++||++|+.+|++|||||||++||+.++..+.+.|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l 157 (230)
T TIGR01184 79 VDRVLPDLSKSERRAIVEEHIALVGLT-EAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEEL 157 (230)
T ss_pred HHhcccCCCHHHHHHHHHHHHHHcCCH-HHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHH
Confidence 12222 22467789999996 5678999999999999999999999999999999999999999999999998
Q ss_pred ccc
Q psy208 439 NKY 441 (443)
Q Consensus 439 ~~~ 441 (443)
.++
T Consensus 158 ~~~ 160 (230)
T TIGR01184 158 MQI 160 (230)
T ss_pred HHH
Confidence 764
No 281
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=2.8e-31 Score=258.86 Aligned_cols=164 Identities=22% Similarity=0.306 Sum_probs=132.3
Q ss_pred CCeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCC-----CCceEEEcC----------
Q psy208 274 PPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISP-----TAGTRTVHR---------- 338 (443)
Q Consensus 274 ~~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p-----~~G~i~~~~---------- 338 (443)
...|+++|++++|+ ++++|+|+||+|++|++++|+|+||||||||+++|+|+++| ++|+|.+.+
T Consensus 14 ~~~l~~~~l~~~~~-~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~ 92 (265)
T PRK14252 14 QQKSEVNKLNFYYG-GYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEV 92 (265)
T ss_pred CceEEEEEEEEEEC-CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCcccccccccc
Confidence 45799999999996 46899999999999999999999999999999999999875 799988742
Q ss_pred -----ceEEEEeccCcccccccchhHHHHHHHh--CCCC-----CHHHHHHHHhcCCCC---hhhhhccCCCCCHHHHHH
Q psy208 339 -----NLKFGYFSQHHVDQLDMNLRCVQLLEAA--FPGK-----PQEEYRRQLGGFGVS---GDLALQFVGSLSGGQKSR 403 (443)
Q Consensus 339 -----~~~ig~~~Q~~~~~l~~~~~~~~~~~~~--~~~~-----~~~~~~~~L~~~gl~---~~~~~~~~~~LSgGekqR 403 (443)
...++|++|++. +... ++.+++... .... ..+.+...+..+++. .+..++++..|||||+||
T Consensus 93 ~~~~~~~~i~~~~q~~~--~~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qr 169 (265)
T PRK14252 93 DPIEVRMRISMVFQKPN--PFPK-SIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQR 169 (265)
T ss_pred CHHHHhccEEEEccCCc--CCcc-hHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHH
Confidence 124899999863 2233 666665421 1111 123456677777763 234578899999999999
Q ss_pred HHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 404 VAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 404 l~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
++|||+++.+|++|||||||++||+.+++.+.+.|.++
T Consensus 170 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l 207 (265)
T PRK14252 170 LCIARALATDPEILLFDEPTSALDPIATASIEELISDL 207 (265)
T ss_pred HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998765
No 282
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.97 E-value=3.9e-31 Score=290.35 Aligned_cols=163 Identities=31% Similarity=0.459 Sum_probs=137.9
Q ss_pred eEEEeeeEEEeCC-CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcC-----------ceEEE
Q psy208 276 ILQLSEVNFEYVP-GKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR-----------NLKFG 343 (443)
Q Consensus 276 ~l~~~~l~~~y~~-~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~ig 343 (443)
.|+++||+|+|++ .+++|+|+||+|++|++++|+|+||||||||+|+|+|+++|++|+|.+++ +..++
T Consensus 463 ~I~~~~vsf~Y~~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i~ 542 (694)
T TIGR03375 463 EIEFRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIG 542 (694)
T ss_pred eEEEEEEEEEeCCCCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhccE
Confidence 5999999999964 35799999999999999999999999999999999999999999999874 23699
Q ss_pred EeccCcccccccchhHHHHHHHhCCCCCHHHHHHHHhcCCCChhh----------hhccCCCCCHHHHHHHHHHHHhccC
Q psy208 344 YFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDL----------ALQFVGSLSGGQKSRVAFARMCMAA 413 (443)
Q Consensus 344 ~~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~----------~~~~~~~LSgGekqRl~lA~al~~~ 413 (443)
|++|++. + ...|+.+++....+..+++++.+.+...++.... ......+||||||||++||||++.+
T Consensus 543 ~v~Q~~~--l-f~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~ 619 (694)
T TIGR03375 543 YVPQDPR--L-FYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRD 619 (694)
T ss_pred EECCChh--h-hhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcC
Confidence 9999973 2 2458888887554455778888888877764211 1123457999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 414 PNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 414 p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
|++|||||||++||+.+.+.+.+.|.++
T Consensus 620 p~iliLDE~Ts~LD~~te~~i~~~l~~~ 647 (694)
T TIGR03375 620 PPILLLDEPTSAMDNRSEERFKDRLKRW 647 (694)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999998765
No 283
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.97 E-value=5.3e-32 Score=241.75 Aligned_cols=159 Identities=28% Similarity=0.446 Sum_probs=134.0
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc---------eEEEEec
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN---------LKFGYFS 346 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~---------~~ig~~~ 346 (443)
+|.+++|.++|+ . .-=.++++|..|++++|+||+||||||||++|+|++.|.+|+|++++. .-+++++
T Consensus 1 ~l~L~~V~~~y~-~--~~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSmlF 77 (231)
T COG3840 1 MLALDDVRFSYG-H--LPMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLF 77 (231)
T ss_pred CccccceEEeeC-c--ceEEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhhh
Confidence 467899999995 2 334678999999999999999999999999999999999999998642 2478899
Q ss_pred cCcccccccchhHHHHHHHhC-CC-----CCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEe
Q psy208 347 QHHVDQLDMNLRCVQLLEAAF-PG-----KPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLD 420 (443)
Q Consensus 347 Q~~~~~l~~~~~~~~~~~~~~-~~-----~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLD 420 (443)
|++ ++....++.+++.-.. |. ...+.+...+.++|+. ...++.|.+|||||||||+|||+|+++-+||+||
T Consensus 78 QEn--NLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~-~~~~RLP~~LSGGqRQRvALARclvR~~PilLLD 154 (231)
T COG3840 78 QEN--NLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLA-GFLKRLPGELSGGQRQRVALARCLVREQPILLLD 154 (231)
T ss_pred hcc--ccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChh-hHhhhCccccCchHHHHHHHHHHHhccCCeEEec
Confidence 985 4666777777764321 21 2345678889999996 5788999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHcc
Q psy208 421 EPTNHLDIETIEALGKAINK 440 (443)
Q Consensus 421 EPTn~LD~~s~~~l~~~L~~ 440 (443)
||++.|||.-+..+...+.+
T Consensus 155 EPFsALdP~LR~eMl~Lv~~ 174 (231)
T COG3840 155 EPFSALDPALRAEMLALVSQ 174 (231)
T ss_pred CchhhcCHHHHHHHHHHHHH
Confidence 99999999999999888765
No 284
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=2.9e-31 Score=256.45 Aligned_cols=162 Identities=22% Similarity=0.291 Sum_probs=131.5
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCC-----CCCceEEEcCc-----------
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIIS-----PTAGTRTVHRN----------- 339 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~-----p~~G~i~~~~~----------- 339 (443)
+|+++||++.|+ ++++|+|+||+|.+|++++|+|+||||||||+++|+|+.+ |++|+|.+.+.
T Consensus 3 ~l~~~~v~~~~~-~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~ 81 (250)
T PRK14266 3 RIEVENLNTYFD-DAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVE 81 (250)
T ss_pred EEEEEeEEEEeC-CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHH
Confidence 589999999996 4679999999999999999999999999999999999864 48999876541
Q ss_pred --eEEEEeccCcccccccchhHHHHHHHhC--CC-CC----HHHHHHHHhcCCCCh---hhhhccCCCCCHHHHHHHHHH
Q psy208 340 --LKFGYFSQHHVDQLDMNLRCVQLLEAAF--PG-KP----QEEYRRQLGGFGVSG---DLALQFVGSLSGGQKSRVAFA 407 (443)
Q Consensus 340 --~~ig~~~Q~~~~~l~~~~~~~~~~~~~~--~~-~~----~~~~~~~L~~~gl~~---~~~~~~~~~LSgGekqRl~lA 407 (443)
..++|++|++. +.. .++.+++.... .. .. ...+...+..+++.. ...++++..||||||||++||
T Consensus 82 ~~~~i~~~~q~~~--~~~-~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~la 158 (250)
T PRK14266 82 LRKKVGMVFQKPN--PFP-KSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIA 158 (250)
T ss_pred HhhheEEEecCCc--cCc-chHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHH
Confidence 24899999863 222 26666654221 11 11 234566788888742 345788999999999999999
Q ss_pred HHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 408 RMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 408 ~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
|+++.+|++|||||||++||+.++..+.+.|.++
T Consensus 159 ral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~ 192 (250)
T PRK14266 159 RTIAVSPEVILMDEPCSALDPISTTKIEDLIHKL 192 (250)
T ss_pred HHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999865
No 285
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.97 E-value=1.8e-31 Score=284.49 Aligned_cols=163 Identities=33% Similarity=0.470 Sum_probs=137.6
Q ss_pred eEEEeeeEEEeCCC-CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-----------eEEE
Q psy208 276 ILQLSEVNFEYVPG-KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-----------LKFG 343 (443)
Q Consensus 276 ~l~~~~l~~~y~~~-~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~ig 343 (443)
.|+++||+|+|++. +++|+|+||+|++|++++|+||||||||||+|+|+|+++|++|+|.+++. ..++
T Consensus 320 ~i~~~~v~f~y~~~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~ 399 (529)
T TIGR02857 320 SLEFSGLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIA 399 (529)
T ss_pred eEEEEEEEEECCCCCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhheE
Confidence 59999999999754 47999999999999999999999999999999999999999999988642 2599
Q ss_pred EeccCcccccccchhHHHHHHHhCCCCCHHHHHHHHhcCCCChh----------hhhccCCCCCHHHHHHHHHHHHhccC
Q psy208 344 YFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGD----------LALQFVGSLSGGQKSRVAFARMCMAA 413 (443)
Q Consensus 344 ~~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~----------~~~~~~~~LSgGekqRl~lA~al~~~ 413 (443)
|++|++. +. +.++.+++....+..+++++.+.++..++... .......+||||||||++||||++++
T Consensus 400 ~v~Q~~~--lf-~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~ 476 (529)
T TIGR02857 400 WVPQHPF--LF-AGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRD 476 (529)
T ss_pred EEcCCCc--cc-CcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcC
Confidence 9999973 22 45788888654445567778888888776421 11234568999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 414 PNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 414 p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
|++|||||||++||+.+.+.+.+.|.++
T Consensus 477 ~~ililDE~ts~lD~~~~~~i~~~l~~~ 504 (529)
T TIGR02857 477 APLLLLDEPTAHLDAETEALVTEALRAL 504 (529)
T ss_pred CCEEEEeCcccccCHHHHHHHHHHHHHh
Confidence 9999999999999999999999998765
No 286
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.97 E-value=1.6e-31 Score=250.05 Aligned_cols=136 Identities=29% Similarity=0.390 Sum_probs=112.9
Q ss_pred EEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcC--CCCCCceEEEcCc------------eEE
Q psy208 277 LQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGI--ISPTAGTRTVHRN------------LKF 342 (443)
Q Consensus 277 l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~--~~p~~G~i~~~~~------------~~i 342 (443)
|+++|++++|+ ++++|+|+||+|.+|++++|+|+||||||||+++|+|+ ++|++|+|.+.+. ..+
T Consensus 1 l~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (200)
T cd03217 1 LEIKDLHVSVG-GKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGI 79 (200)
T ss_pred CeEEEEEEEeC-CEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcE
Confidence 47899999996 46899999999999999999999999999999999999 5899999987531 238
Q ss_pred EEeccCcccccccchhHHHHHHHhCCCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCC
Q psy208 343 GYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEP 422 (443)
Q Consensus 343 g~~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEP 422 (443)
+|++|++. +....+..+ .+ ......|||||+||++||++++.+|++||||||
T Consensus 80 ~~v~q~~~--~~~~~~~~~----------------~l----------~~~~~~LS~G~~qrv~laral~~~p~illlDEP 131 (200)
T cd03217 80 FLAFQYPP--EIPGVKNAD----------------FL----------RYVNEGFSGGEKKRNEILQLLLLEPDLAILDEP 131 (200)
T ss_pred EEeecChh--hccCccHHH----------------HH----------hhccccCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 88888752 222222211 11 123358999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHccc
Q psy208 423 TNHLDIETIEALGKAINKY 441 (443)
Q Consensus 423 Tn~LD~~s~~~l~~~L~~~ 441 (443)
|++||+.+++.+.+.|.++
T Consensus 132 t~~LD~~~~~~l~~~L~~~ 150 (200)
T cd03217 132 DSGLDIDALRLVAEVINKL 150 (200)
T ss_pred CccCCHHHHHHHHHHHHHH
Confidence 9999999999999999865
No 287
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=3.9e-31 Score=257.39 Aligned_cols=164 Identities=20% Similarity=0.223 Sum_probs=134.6
Q ss_pred CCeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCC-----CCceEEEcCc---------
Q psy208 274 PPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISP-----TAGTRTVHRN--------- 339 (443)
Q Consensus 274 ~~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p-----~~G~i~~~~~--------- 339 (443)
.+++.++++++.|+ ++++|+|+||+|++|++++|+|+||||||||+++|+|+++| ++|+|.+.+.
T Consensus 6 ~~~~~~~~~~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~ 84 (261)
T PRK14263 6 PIVMDCKLDKIFYG-NFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDP 84 (261)
T ss_pred CceEEEEeEEEEeC-CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccch
Confidence 45799999999995 56899999999999999999999999999999999999986 7999987531
Q ss_pred ----eEEEEeccCcccccccchhHHHHHHHh--C---CCCCHHHHHHHHhcCCCCh---hhhhccCCCCCHHHHHHHHHH
Q psy208 340 ----LKFGYFSQHHVDQLDMNLRCVQLLEAA--F---PGKPQEEYRRQLGGFGVSG---DLALQFVGSLSGGQKSRVAFA 407 (443)
Q Consensus 340 ----~~ig~~~Q~~~~~l~~~~~~~~~~~~~--~---~~~~~~~~~~~L~~~gl~~---~~~~~~~~~LSgGekqRl~lA 407 (443)
..++|++|++. +. ..++.+++... . .......+..+++.+++.. ...++++.+|||||+||++||
T Consensus 85 ~~~~~~i~~v~q~~~--~~-~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~la 161 (261)
T PRK14263 85 VVVRRYIGMVFQQPN--PF-SMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIA 161 (261)
T ss_pred HhhhhceEEEecCCc--cc-cccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHH
Confidence 24899999863 22 35666666421 1 1111245677888888743 234578899999999999999
Q ss_pred HHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 408 RMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 408 ~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
|||+.+|++|||||||++||+.++..+.+.|.++
T Consensus 162 ral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~ 195 (261)
T PRK14263 162 RAIATEPEVLLLDEPCSALDPIATRRVEELMVEL 195 (261)
T ss_pred HHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999875
No 288
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.97 E-value=1.4e-30 Score=268.27 Aligned_cols=350 Identities=18% Similarity=0.243 Sum_probs=241.1
Q ss_pred hhhhhhhhhcchHHHHHHHcccccc---------CC--------------CCCcceEEec------------CCceEEEE
Q psy208 7 NTVSNSIFCFSSEFYCKALTLHLHL---------EG--------------GMVSGQLRIP------------SHISVLHV 51 (443)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~---------~~--------------~~~~G~i~~~------------~~~~i~~l 51 (443)
=.+.||...|++----+.+++.+.+ +| .||+|+|.+. ....|+.+
T Consensus 9 l~~~~i~K~FggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~GI~~V 88 (500)
T COG1129 9 LELRGISKSFGGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAGIATV 88 (500)
T ss_pred eeeecceEEcCCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCCcEEE
Confidence 3456677777664444444444444 11 1466888763 23568888
Q ss_pred ecccCC-CCchHHHHHHhccHHHHHHHHHHHHHHHHHhCCCCChhhHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCCCh
Q psy208 52 EQEVVG-DDTPAIDSVLECDTKRQNLLNREKTITQAINNGTADANMSTELTQVFAELEAIEADKAPARASVILAGLGFTP 130 (443)
Q Consensus 52 ~Q~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~~~L~~lgl~~ 130 (443)
.|++.. +..++.+-++-+..... .+.-++...+..+++++|+.+|++.
T Consensus 89 ~QEl~L~p~LsVaeNifLgre~~~-------------------------------~~g~id~~~m~~~A~~~l~~lg~~~ 137 (500)
T COG1129 89 HQELSLVPNLSVAENIFLGREPTR-------------------------------RFGLIDRKAMRRRARELLARLGLDI 137 (500)
T ss_pred eechhccCCccHHHHhhccccccc-------------------------------CCCccCHHHHHHHHHHHHHHcCCCC
Confidence 998865 45666655542211000 0111222345678999999999974
Q ss_pred hhhhccCCCCChHHHH-----------------------------HHHHHHHHHhhhCCCeEEEEecCHHHHhccCCcEE
Q psy208 131 EMQKRATKHFSGGWRK-----------------------------MAIIWLENYLQNWPTTLLVVSHDRHFLDSVPTDIF 181 (443)
Q Consensus 131 ~~~~~~~~~LSGGqr~-----------------------------~~i~wL~~~L~~~~~tviiVSHDr~fLd~v~~~i~ 181 (443)
+ .+.++.+||+|||| +.+..+...|++.+.+||+|||..+.+-++||||.
T Consensus 138 ~-~~~~v~~LsiaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~Drit 216 (500)
T COG1129 138 D-PDTLVGDLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRIT 216 (500)
T ss_pred C-hhhhhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEE
Confidence 3 68999999999999 45667777788889999999999999999999999
Q ss_pred EEeCCeeEEEcCCh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccc
Q psy208 182 HLHSQRIDTYRGNY-EAFDKIKTEKLKNQQREIEAQRMHREHVQKFIDTFRYNANRASSVQSKIKQLERLPELKPIEKEV 260 (443)
Q Consensus 182 ~l~~g~i~~~~G~y-~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 260 (443)
+|.+|+..- .+.. +++... +.++.+-. + .+....+. .
T Consensus 217 VlRDG~~v~-~~~~~~~~~~~-----------------------~lv~~MvG----------r-----~~~~~~~~-~-- 254 (500)
T COG1129 217 VLRDGRVVG-TRPTAAETSED-----------------------ELVRLMVG----------R-----ELEDLFPE-P-- 254 (500)
T ss_pred EEeCCEEee-ecccccCCCHH-----------------------HHHHHhhC----------c-----chhhhccc-c--
Confidence 999999752 2221 222100 00110000 0 00000000 0
Q ss_pred ccccccCCCCCCCCCeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-
Q psy208 261 EVVLKFPDTELLSPPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN- 339 (443)
Q Consensus 261 ~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~- 339 (443)
.....+.++++++|++.. ..++|+||++++||++||.|-=|||+|-|+++|.|..++.+|+|.+++.
T Consensus 255 -------~~~~~~~~~l~v~~l~~~-----~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~ 322 (500)
T COG1129 255 -------PEEGIGEPVLEVRNLSGG-----GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKP 322 (500)
T ss_pred -------cccCCCCcEEEEecCCCC-----CceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEE
Confidence 001234678999999853 1689999999999999999999999999999999999999999998753
Q ss_pred -----------eEEEEeccCcc-cccccchhHHHHHH-----Hh----CCCC--CHHHHHHHHhcCCCChhhhhccCCCC
Q psy208 340 -----------LKFGYFSQHHV-DQLDMNLRCVQLLE-----AA----FPGK--PQEEYRRQLGGFGVSGDLALQFVGSL 396 (443)
Q Consensus 340 -----------~~ig~~~Q~~~-~~l~~~~~~~~~~~-----~~----~~~~--~~~~~~~~L~~~gl~~~~~~~~~~~L 396 (443)
..++|+|.+.. ..+....++.+++. .. +... ....+..+...+.+.....+.++.+|
T Consensus 323 v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~L 402 (500)
T COG1129 323 VRIRSPRDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTL 402 (500)
T ss_pred ccCCCHHHHHHcCCEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcC
Confidence 24899997642 22334444444431 11 1111 12345677888888777778999999
Q ss_pred CHHHHHHHHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHcccc
Q psy208 397 SGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKYT 442 (443)
Q Consensus 397 SgGekqRl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~~ 442 (443)
|||.+|||.|||.|..+|++|||||||.|+|+-++..+.+.|+++.
T Consensus 403 SGGNQQKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA 448 (500)
T COG1129 403 SGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELA 448 (500)
T ss_pred CchhhhhHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998753
No 289
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.97 E-value=4e-31 Score=258.87 Aligned_cols=159 Identities=25% Similarity=0.443 Sum_probs=134.2
Q ss_pred EEEeeeEEEeCC-CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-----------eEEEE
Q psy208 277 LQLSEVNFEYVP-GKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-----------LKFGY 344 (443)
Q Consensus 277 l~~~~l~~~y~~-~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~ig~ 344 (443)
|+++|++++|++ ..++|+|+||+|++|++++|+|+||||||||+++|+|+++ ++|+|.+++. ..++|
T Consensus 3 i~~~nls~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i~~ 81 (275)
T cd03289 3 MTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAFGV 81 (275)
T ss_pred EEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhEEE
Confidence 789999999953 4579999999999999999999999999999999999997 7899988651 25899
Q ss_pred eccCcccccccchhHHHHHHHhCCCCCHHHHHHHHhcCCCChhhhhccCCC-----------CCHHHHHHHHHHHHhccC
Q psy208 345 FSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGS-----------LSGGQKSRVAFARMCMAA 413 (443)
Q Consensus 345 ~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~~~~-----------LSgGekqRl~lA~al~~~ 413 (443)
++|++. +.. .++.+++.. +.....+++...+..+|+. ...++.+.. ||||||||++||||++.+
T Consensus 82 v~q~~~--lf~-~tv~~nl~~-~~~~~~~~~~~~l~~~gL~-~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~ 156 (275)
T cd03289 82 IPQKVF--IFS-GTFRKNLDP-YGKWSDEEIWKVAEEVGLK-SVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSK 156 (275)
T ss_pred ECCCcc--cch-hhHHHHhhh-ccCCCHHHHHHHHHHcCCH-HHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcC
Confidence 999863 222 477777642 2223566788889999985 456666665 999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 414 PNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 414 p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
|++|||||||++||+.+...+.+.|.+.
T Consensus 157 p~illlDEpts~LD~~~~~~l~~~l~~~ 184 (275)
T cd03289 157 AKILLLDEPSAHLDPITYQVIRKTLKQA 184 (275)
T ss_pred CCEEEEECccccCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999998763
No 290
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.97 E-value=2.8e-31 Score=289.13 Aligned_cols=163 Identities=19% Similarity=0.318 Sum_probs=138.1
Q ss_pred CeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCceEEEEeccCcccccc
Q psy208 275 PILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLD 354 (443)
Q Consensus 275 ~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ig~~~Q~~~~~l~ 354 (443)
..|+++||++.|++++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+.....++|++|++. +.
T Consensus 450 ~~i~~~nv~~~~~~~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~~~~i~~v~Q~~~--l~ 527 (659)
T TIGR00954 450 NGIKFENIPLVTPNGDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPAKGKLFYVPQRPY--MT 527 (659)
T ss_pred CeEEEEeeEEECCCCCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecCCCcEEEECCCCC--CC
Confidence 4699999999996556799999999999999999999999999999999999999999998876678999999873 33
Q ss_pred cchhHHHHHHHhC-------CCCCHHHHHHHHhcCCCChhhhhcc---------CCCCCHHHHHHHHHHHHhccCCCeEE
Q psy208 355 MNLRCVQLLEAAF-------PGKPQEEYRRQLGGFGVSGDLALQF---------VGSLSGGQKSRVAFARMCMAAPNFLV 418 (443)
Q Consensus 355 ~~~~~~~~~~~~~-------~~~~~~~~~~~L~~~gl~~~~~~~~---------~~~LSgGekqRl~lA~al~~~p~lLi 418 (443)
.. ++.+++.... +...++++.++++.+++.. ..+++ ..+||||||||++|||+++.+|++||
T Consensus 528 ~~-tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~-~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~ill 605 (659)
T TIGR00954 528 LG-TLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTH-ILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAI 605 (659)
T ss_pred Cc-CHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHH-HHhhcCCcccccccccCCCHHHHHHHHHHHHHHcCCCEEE
Confidence 33 7777765321 2234567788899999853 34443 37999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHccc
Q psy208 419 LDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 419 LDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
|||||++||+.+.+.+.+.++++
T Consensus 606 LDEpts~LD~~~~~~l~~~l~~~ 628 (659)
T TIGR00954 606 LDECTSAVSVDVEGYMYRLCREF 628 (659)
T ss_pred EeCCccCCCHHHHHHHHHHHHHc
Confidence 99999999999999999998764
No 291
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=2.2e-31 Score=247.48 Aligned_cols=140 Identities=27% Similarity=0.379 Sum_probs=117.3
Q ss_pred eEEEeeeEEEeCC---CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCC--CCCCceEEEcCc-------eEEE
Q psy208 276 ILQLSEVNFEYVP---GKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGII--SPTAGTRTVHRN-------LKFG 343 (443)
Q Consensus 276 ~l~~~~l~~~y~~---~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~--~p~~G~i~~~~~-------~~ig 343 (443)
.|+++|+++.|++ ++++|+++||+|.+|++++|+||||||||||+++|+|+. +|++|+|.+.+. ..++
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i~ 82 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRSTG 82 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhhhceE
Confidence 6899999999964 257999999999999999999999999999999999986 489999987642 3589
Q ss_pred EeccCcccccccchhHHHHHHHhCCCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCC
Q psy208 344 YFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPT 423 (443)
Q Consensus 344 ~~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPT 423 (443)
|++|++. +....++.+++.... .+ ..|||||+||++||++++.+|++|||||||
T Consensus 83 ~~~q~~~--~~~~~tv~~~l~~~~----------~~--------------~~LSgGe~qrv~la~al~~~p~vlllDEP~ 136 (192)
T cd03232 83 YVEQQDV--HSPNLTVREALRFSA----------LL--------------RGLSVEQRKRLTIGVELAAKPSILFLDEPT 136 (192)
T ss_pred EecccCc--cccCCcHHHHHHHHH----------HH--------------hcCCHHHhHHHHHHHHHhcCCcEEEEeCCC
Confidence 9999752 333445555553110 00 089999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHccc
Q psy208 424 NHLDIETIEALGKAINKY 441 (443)
Q Consensus 424 n~LD~~s~~~l~~~L~~~ 441 (443)
++||+.+++.+.+.|.++
T Consensus 137 ~~LD~~~~~~l~~~l~~~ 154 (192)
T cd03232 137 SGLDSQAAYNIVRFLKKL 154 (192)
T ss_pred cCCCHHHHHHHHHHHHHH
Confidence 999999999999999875
No 292
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.97 E-value=1.7e-32 Score=241.95 Aligned_cols=162 Identities=30% Similarity=0.408 Sum_probs=136.1
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-----------eEEEE
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-----------LKFGY 344 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~ig~ 344 (443)
.++++++.+.- ++.++|+++||++++||+++|+||+|||||||+|+++-+++|++|++.+.+. ..++|
T Consensus 3 lle~kq~~y~a-~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY 81 (223)
T COG4619 3 LLELKQVGYLA-GDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSY 81 (223)
T ss_pred chHHHHHHhhc-CCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHH
Confidence 35667776654 3578999999999999999999999999999999999999999999988642 35788
Q ss_pred eccCcccccccchhHHHHHHH----hCCCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEe
Q psy208 345 FSQHHVDQLDMNLRCVQLLEA----AFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLD 420 (443)
Q Consensus 345 ~~Q~~~~~l~~~~~~~~~~~~----~~~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLD 420 (443)
+.|.+. +. ..++.+++.- .....+...+..+|++|++....+.+++.+||||||||++|+|-|..-|+||+||
T Consensus 82 ~~Q~pa--Lf-g~tVeDNlifP~~~r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLD 158 (223)
T COG4619 82 CAQTPA--LF-GDTVEDNLIFPWQIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLD 158 (223)
T ss_pred HHcCcc--cc-ccchhhccccchHHhccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEec
Confidence 988863 22 2355555421 1122356678899999999988999999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHccc
Q psy208 421 EPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 421 EPTn~LD~~s~~~l~~~L~~~ 441 (443)
|||+.||+.+.+.+++.|-.|
T Consensus 159 E~TsALD~~nkr~ie~mi~~~ 179 (223)
T COG4619 159 EITSALDESNKRNIEEMIHRY 179 (223)
T ss_pred CchhhcChhhHHHHHHHHHHH
Confidence 999999999999999998776
No 293
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.97 E-value=2e-31 Score=258.92 Aligned_cols=166 Identities=21% Similarity=0.345 Sum_probs=141.3
Q ss_pred eEEEeeeEEEeCCC---CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCC-C----CCceEEEcCc--------
Q psy208 276 ILQLSEVNFEYVPG---KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIIS-P----TAGTRTVHRN-------- 339 (443)
Q Consensus 276 ~l~~~~l~~~y~~~---~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~-p----~~G~i~~~~~-------- 339 (443)
+|+++||+.+|... ..+++||||+|.+||++||||.+||||||+.+.|+|+++ | .+|+|.+.+.
T Consensus 1 lL~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~ 80 (316)
T COG0444 1 LLEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEK 80 (316)
T ss_pred CceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHH
Confidence 47899999999643 369999999999999999999999999999999999998 3 5688877532
Q ss_pred -------eEEEEeccCcccccccchhHHHHHHHhCC---CC-----CHHHHHHHHhcCCCChh--hhhccCCCCCHHHHH
Q psy208 340 -------LKFGYFSQHHVDQLDMNLRCVQLLEAAFP---GK-----PQEEYRRQLGGFGVSGD--LALQFVGSLSGGQKS 402 (443)
Q Consensus 340 -------~~ig~~~Q~~~~~l~~~~~~~~~~~~~~~---~~-----~~~~~~~~L~~~gl~~~--~~~~~~~~LSgGekq 402 (443)
..|+|+||++...+++..++-..+..... .. ..+.+.++|+.+|+... ..+.+|++|||||||
T Consensus 81 ~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQ 160 (316)
T COG0444 81 ELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQ 160 (316)
T ss_pred HHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHH
Confidence 36999999998888888877665543211 11 13467889999999865 678999999999999
Q ss_pred HHHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 403 RVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 403 Rl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
||.||.|++.+|++||.||||++||...+.++.+.|++.
T Consensus 161 RV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l 199 (316)
T COG0444 161 RVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKEL 199 (316)
T ss_pred HHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999865
No 294
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.97 E-value=5e-31 Score=283.37 Aligned_cols=163 Identities=26% Similarity=0.347 Sum_probs=137.0
Q ss_pred eEEEeeeEEEeCC-CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcC-----------ceEEE
Q psy208 276 ILQLSEVNFEYVP-GKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR-----------NLKFG 343 (443)
Q Consensus 276 ~l~~~~l~~~y~~-~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~ig 343 (443)
-|+++||+|+|++ ++++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.+++ ..+++
T Consensus 330 ~i~~~~v~f~y~~~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~ 409 (571)
T TIGR02203 330 DVEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVA 409 (571)
T ss_pred eEEEEEEEEEcCCCCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhce
Confidence 4999999999964 35799999999999999999999999999999999999999999999875 23599
Q ss_pred EeccCcccccccchhHHHHHHHhCC-CCCHHHHHHHHhcCCCChhh------hhc----cCCCCCHHHHHHHHHHHHhcc
Q psy208 344 YFSQHHVDQLDMNLRCVQLLEAAFP-GKPQEEYRRQLGGFGVSGDL------ALQ----FVGSLSGGQKSRVAFARMCMA 412 (443)
Q Consensus 344 ~~~Q~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~L~~~gl~~~~------~~~----~~~~LSgGekqRl~lA~al~~ 412 (443)
|++|++. + .+.+..+++....+ ..+++++.+.+..+|+.... .+. ....||||||||++|||+++.
T Consensus 410 ~v~Q~~~--l-f~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~ 486 (571)
T TIGR02203 410 LVSQDVV--L-FNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLK 486 (571)
T ss_pred EEccCcc--c-ccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhc
Confidence 9999973 2 24577788764433 45677888888888774221 122 234699999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 413 APNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 413 ~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
+|++|||||||++||..+.+.+.+.|.++
T Consensus 487 ~~~illLDEpts~LD~~~~~~i~~~L~~~ 515 (571)
T TIGR02203 487 DAPILILDEATSALDNESERLVQAALERL 515 (571)
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999998775
No 295
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.97 E-value=2.7e-31 Score=286.45 Aligned_cols=163 Identities=25% Similarity=0.385 Sum_probs=136.1
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-----------eEEEE
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-----------LKFGY 344 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~ig~ 344 (443)
.++++||+|+|++++++|+|+||+|++|++++|+|+||||||||+|+|+|+++|++|+|.+++. ..++|
T Consensus 334 ~I~~~~vsf~y~~~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 413 (588)
T PRK13657 334 AVEFDDVSFSYDNSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAV 413 (588)
T ss_pred eEEEEEEEEEeCCCCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheEE
Confidence 5999999999975467999999999999999999999999999999999999999999988652 36999
Q ss_pred eccCcccccccchhHHHHHHHhCCCCCHHHHHHHHhcCCCChh----------hhhccCCCCCHHHHHHHHHHHHhccCC
Q psy208 345 FSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGD----------LALQFVGSLSGGQKSRVAFARMCMAAP 414 (443)
Q Consensus 345 ~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~----------~~~~~~~~LSgGekqRl~lA~al~~~p 414 (443)
++|++. .+ ..|..+++....+..+++++...+...++... ........||||||||++|||+++++|
T Consensus 414 v~Q~~~-lf--~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~ 490 (588)
T PRK13657 414 VFQDAG-LF--NRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDP 490 (588)
T ss_pred EecCcc-cc--cccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 999973 22 45778887654345567777777777665321 112234579999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 415 NFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 415 ~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
++|||||||++||+.+.+.+.+.|.+.
T Consensus 491 ~iliLDEpts~LD~~t~~~i~~~l~~~ 517 (588)
T PRK13657 491 PILILDEATSALDVETEAKVKAALDEL 517 (588)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999988764
No 296
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.97 E-value=8.5e-31 Score=281.91 Aligned_cols=164 Identities=24% Similarity=0.369 Sum_probs=135.9
Q ss_pred CeEEEeeeEEEeCCC--CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-----------eE
Q psy208 275 PILQLSEVNFEYVPG--KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-----------LK 341 (443)
Q Consensus 275 ~~l~~~~l~~~y~~~--~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~ 341 (443)
..|+++||+|+|+++ +++|+|+||+|++|++++|+|+||||||||+|+|+|+++|++|+|.+++. ..
T Consensus 336 ~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ 415 (576)
T TIGR02204 336 GEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRAR 415 (576)
T ss_pred ceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHh
Confidence 358999999999642 57999999999999999999999999999999999999999999988651 35
Q ss_pred EEEeccCcccccccchhHHHHHHHhCCCCCHHHHHHHHhcCCCChh----------hhhccCCCCCHHHHHHHHHHHHhc
Q psy208 342 FGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGD----------LALQFVGSLSGGQKSRVAFARMCM 411 (443)
Q Consensus 342 ig~~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~----------~~~~~~~~LSgGekqRl~lA~al~ 411 (443)
++|+||++. -.+.|..+++....+..+++++...+...++... ........||||||||++||||++
T Consensus 416 i~~~~Q~~~---lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~ 492 (576)
T TIGR02204 416 MALVPQDPV---LFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAIL 492 (576)
T ss_pred ceEEccCCc---cccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHH
Confidence 999999873 2345777887654444566777777777776321 111234579999999999999999
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 412 AAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 412 ~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
++|++|||||||++||+.+.+.+.+.|.++
T Consensus 493 ~~~~ililDEpts~lD~~~~~~i~~~l~~~ 522 (576)
T TIGR02204 493 KDAPILLLDEATSALDAESEQLVQQALETL 522 (576)
T ss_pred hCCCeEEEeCcccccCHHHHHHHHHHHHHH
Confidence 999999999999999999999999888764
No 297
>KOG0058|consensus
Probab=99.97 E-value=2.2e-31 Score=279.80 Aligned_cols=163 Identities=25% Similarity=0.403 Sum_probs=135.0
Q ss_pred CeEEEeeeEEEeCCC--CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcC-----------ceE
Q psy208 275 PILQLSEVNFEYVPG--KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR-----------NLK 341 (443)
Q Consensus 275 ~~l~~~~l~~~y~~~--~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~ 341 (443)
-.|+++||+|+|+.. .++|+|+||+|+||+++|||||||+||||+.++|..++.|++|+|.+++ +.+
T Consensus 464 G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~ 543 (716)
T KOG0058|consen 464 GVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRK 543 (716)
T ss_pred ceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHH
Confidence 369999999999753 3699999999999999999999999999999999999999999998864 246
Q ss_pred EEEeccCcccccccchhHHHHHHHhCCCCCHHHHHHHHhcCC-------CCh---hhhhccCCCCCHHHHHHHHHHHHhc
Q psy208 342 FGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFG-------VSG---DLALQFVGSLSGGQKSRVAFARMCM 411 (443)
Q Consensus 342 ig~~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~g-------l~~---~~~~~~~~~LSgGekqRl~lA~al~ 411 (443)
||++.|+|.. ...++.+++.......+++++.+..+.-+ |+. .....+..+||||||||++|||||+
T Consensus 544 Ig~V~QEPvL---Fs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALl 620 (716)
T KOG0058|consen 544 IGLVGQEPVL---FSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALL 620 (716)
T ss_pred eeeeecccee---ecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHh
Confidence 9999999852 35678888876666666666655443322 111 1223455689999999999999999
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHcc
Q psy208 412 AAPNFLVLDEPTNHLDIETIEALGKAINK 440 (443)
Q Consensus 412 ~~p~lLiLDEPTn~LD~~s~~~l~~~L~~ 440 (443)
++|.||||||.|++||.++...+.++|.+
T Consensus 621 r~P~VLILDEATSALDaeSE~lVq~aL~~ 649 (716)
T KOG0058|consen 621 RNPRVLILDEATSALDAESEYLVQEALDR 649 (716)
T ss_pred cCCCEEEEechhhhcchhhHHHHHHHHHH
Confidence 99999999999999999999999999864
No 298
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.97 E-value=1.4e-30 Score=286.47 Aligned_cols=159 Identities=25% Similarity=0.389 Sum_probs=133.3
Q ss_pred CeEEEeeeEEEeCC--CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-----------eE
Q psy208 275 PILQLSEVNFEYVP--GKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-----------LK 341 (443)
Q Consensus 275 ~~l~~~~l~~~y~~--~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~ 341 (443)
..|+++||+|+|++ ++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++. .+
T Consensus 477 ~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~ 556 (711)
T TIGR00958 477 GLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQ 556 (711)
T ss_pred CeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhh
Confidence 35999999999974 357999999999999999999999999999999999999999999998752 36
Q ss_pred EEEeccCcccccccchhHHHHHHHhCCCCCHHHHHHHHhcCCCChhh------hh----ccCCCCCHHHHHHHHHHHHhc
Q psy208 342 FGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDL------AL----QFVGSLSGGQKSRVAFARMCM 411 (443)
Q Consensus 342 ig~~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~------~~----~~~~~LSgGekqRl~lA~al~ 411 (443)
++|++|++. + ...|+.+++....+..+++++.+.++..++.... .+ ....+||||||||++||||++
T Consensus 557 i~~v~Q~~~--l-F~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl 633 (711)
T TIGR00958 557 VALVGQEPV--L-FSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALV 633 (711)
T ss_pred ceEEecCcc--c-cccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHh
Confidence 999999974 2 2457888886544555677788888877764211 12 234579999999999999999
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHH
Q psy208 412 AAPNFLVLDEPTNHLDIETIEALGK 436 (443)
Q Consensus 412 ~~p~lLiLDEPTn~LD~~s~~~l~~ 436 (443)
++|++|||||||++||+++.+.+.+
T Consensus 634 ~~p~ILILDEpTSaLD~~te~~i~~ 658 (711)
T TIGR00958 634 RKPRVLILDEATSALDAECEQLLQE 658 (711)
T ss_pred cCCCEEEEEccccccCHHHHHHHHH
Confidence 9999999999999999999999887
No 299
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.3e-30 Score=261.50 Aligned_cols=165 Identities=21% Similarity=0.313 Sum_probs=133.3
Q ss_pred CCeEEEeeeEEEeCC-CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCC-----CCCceEEEcC---------
Q psy208 274 PPILQLSEVNFEYVP-GKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIIS-----PTAGTRTVHR--------- 338 (443)
Q Consensus 274 ~~~l~~~~l~~~y~~-~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~-----p~~G~i~~~~--------- 338 (443)
..+|+++|++++|.+ .+++|+|+||+|.+|+++||+|+||||||||+++|+|+.+ |++|+|.+.+
T Consensus 78 ~~~i~~~nls~~y~~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~ 157 (329)
T PRK14257 78 ANVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKIS 157 (329)
T ss_pred CceEEEEeeEEEecCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence 458999999999953 3579999999999999999999999999999999999986 5799987632
Q ss_pred ----ceEEEEeccCcccccccchhHHHHHHH--hCCCCCH-----HHHHHHHhcCCCCh---hhhhccCCCCCHHHHHHH
Q psy208 339 ----NLKFGYFSQHHVDQLDMNLRCVQLLEA--AFPGKPQ-----EEYRRQLGGFGVSG---DLALQFVGSLSGGQKSRV 404 (443)
Q Consensus 339 ----~~~ig~~~Q~~~~~l~~~~~~~~~~~~--~~~~~~~-----~~~~~~L~~~gl~~---~~~~~~~~~LSgGekqRl 404 (443)
+..++|+||++. .+ ..++.+++.. .+..... ..+...+..+++.. ...++++.+|||||||||
T Consensus 158 ~~~lr~~i~~v~q~~~-~~--~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl 234 (329)
T PRK14257 158 SLELRTRIGMVFQKPT-PF--EMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRL 234 (329)
T ss_pred hHhhhccEEEEecCCc-cC--CCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHH
Confidence 235999999874 22 3566676642 1111221 12466777777632 345788999999999999
Q ss_pred HHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 405 AFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 405 ~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
+||||++.+|+||||||||++||+.+...+.+.|.++
T Consensus 235 ~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l 271 (329)
T PRK14257 235 CIARAIALEPEVLLMDEPTSALDPIATAKIEELILEL 271 (329)
T ss_pred HHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998765
No 300
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.97 E-value=1.3e-30 Score=278.74 Aligned_cols=164 Identities=29% Similarity=0.403 Sum_probs=133.0
Q ss_pred CeEEEeeeEEEeCCC-CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcC-----------ceEE
Q psy208 275 PILQLSEVNFEYVPG-KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR-----------NLKF 342 (443)
Q Consensus 275 ~~l~~~~l~~~y~~~-~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~i 342 (443)
..++++|++|+|+++ +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++ +..+
T Consensus 315 ~~i~~~~v~~~y~~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i 394 (544)
T TIGR01842 315 GHLSVENVTIVPPGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHI 394 (544)
T ss_pred CeEEEEEEEEEcCCCCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhhe
Confidence 359999999999643 5799999999999999999999999999999999999999999998864 1359
Q ss_pred EEeccCcccccccchhHHHHHHHhCCCCCHHHHHHHHhcCCCCh----------hhhhccCCCCCHHHHHHHHHHHHhcc
Q psy208 343 GYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSG----------DLALQFVGSLSGGQKSRVAFARMCMA 412 (443)
Q Consensus 343 g~~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~----------~~~~~~~~~LSgGekqRl~lA~al~~ 412 (443)
+|++|++. +. ..+..+++....+..+++++.+.++..++.. ........+||||||||++||||++.
T Consensus 395 ~~v~q~~~--lf-~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~ 471 (544)
T TIGR01842 395 GYLPQDVE--LF-PGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYG 471 (544)
T ss_pred EEecCCcc--cc-cccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhc
Confidence 99999863 22 2477777753223345555555555444321 12334567899999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 413 APNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 413 ~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
+|++|||||||++||+.+.+.+.+.|.++
T Consensus 472 ~~~ililDEpts~LD~~~~~~i~~~l~~~ 500 (544)
T TIGR01842 472 DPKLVVLDEPNSNLDEEGEQALANAIKAL 500 (544)
T ss_pred CCCEEEEeCCccccCHHHHHHHHHHHHHH
Confidence 99999999999999999999999998764
No 301
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.97 E-value=2.3e-30 Score=278.84 Aligned_cols=163 Identities=26% Similarity=0.362 Sum_probs=134.1
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-----------eEEEE
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-----------LKFGY 344 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~ig~ 344 (443)
.++++||+|+|++++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++. ..++|
T Consensus 334 ~i~~~~v~~~y~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 413 (585)
T TIGR01192 334 AVEFRHITFEFANSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIAT 413 (585)
T ss_pred eEEEEEEEEECCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhheEE
Confidence 5999999999975567999999999999999999999999999999999999999999988642 35899
Q ss_pred eccCcccccccchhHHHHHHHhCCCCCHHHHHHHHhcCCCCh----------hhhhccCCCCCHHHHHHHHHHHHhccCC
Q psy208 345 FSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSG----------DLALQFVGSLSGGQKSRVAFARMCMAAP 414 (443)
Q Consensus 345 ~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~----------~~~~~~~~~LSgGekqRl~lA~al~~~p 414 (443)
++|++. .+ ..++.+++....+..+++++...+...++.. .........||||||||++|||||+.+|
T Consensus 414 v~q~~~-lf--~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~p 490 (585)
T TIGR01192 414 VFQDAG-LF--NRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNA 490 (585)
T ss_pred EccCCc-cC--cccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 999963 22 3577888765434445566655555444321 1234556789999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 415 NFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 415 ~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
++|||||||++||+.+.+.+.+.|.++
T Consensus 491 ~ililDEpts~LD~~~~~~i~~~l~~~ 517 (585)
T TIGR01192 491 PILVLDEATSALDVETEARVKNAIDAL 517 (585)
T ss_pred CEEEEECCccCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999998764
No 302
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.97 E-value=1.2e-30 Score=253.39 Aligned_cols=164 Identities=18% Similarity=0.224 Sum_probs=126.9
Q ss_pred CCeEEEeeeEEEeCCC-CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcC-----------ceE
Q psy208 274 PPILQLSEVNFEYVPG-KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR-----------NLK 341 (443)
Q Consensus 274 ~~~l~~~~l~~~y~~~-~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~ 341 (443)
...|+++|++++|++. +.+|+++||+|.+|++++|+|+||||||||+++|+|+++|++|+|.+.+ ...
T Consensus 17 ~~~i~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~ 96 (257)
T cd03288 17 GGEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSR 96 (257)
T ss_pred CceEEEEEEEEEeCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhhh
Confidence 3579999999999642 4799999999999999999999999999999999999999999998753 235
Q ss_pred EEEeccCcccccccchhHHHHHHHhCCCCCHHHHHHHHhcCCCCh----------hhhhccCCCCCHHHHHHHHHHHHhc
Q psy208 342 FGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSG----------DLALQFVGSLSGGQKSRVAFARMCM 411 (443)
Q Consensus 342 ig~~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~----------~~~~~~~~~LSgGekqRl~lA~al~ 411 (443)
++|++|++. +.. .++.+++.... ......+...+..+++.. ...+.++..||+||+||++|||+++
T Consensus 97 i~~v~q~~~--l~~-~tv~~nl~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~ 172 (257)
T cd03288 97 LSIILQDPI--LFS-GSIRFNLDPEC-KCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFV 172 (257)
T ss_pred EEEECCCCc--ccc-cHHHHhcCcCC-CCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHh
Confidence 899999863 222 35554442111 111222333333333311 2234567899999999999999999
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 412 AAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 412 ~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
.+|++|||||||++||+.+++.+.+.|.++
T Consensus 173 ~~p~llllDEPt~gLD~~~~~~l~~~l~~~ 202 (257)
T cd03288 173 RKSSILIMDEATASIDMATENILQKVVMTA 202 (257)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999988764
No 303
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=2.5e-31 Score=239.77 Aligned_cols=162 Identities=29% Similarity=0.462 Sum_probs=137.1
Q ss_pred CeEEEeeeEEEeCCCCc--eeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc------eEEEEec
Q psy208 275 PILQLSEVNFEYVPGKP--ILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN------LKFGYFS 346 (443)
Q Consensus 275 ~~l~~~~l~~~y~~~~~--il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------~~ig~~~ 346 (443)
.++.+++++.+|+ +++ +|+|+|++|.+||.++++||+||||||||++++|+.+|+.|+|.++.+ ..-|.++
T Consensus 2 ~~l~~~~~sl~y~-g~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPgaergvVF 80 (259)
T COG4525 2 CMLNVSHLSLSYE-GKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAERGVVF 80 (259)
T ss_pred ceeehhheEEecC-CcchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCccceeEe
Confidence 3578899999996 455 999999999999999999999999999999999999999999988653 3468899
Q ss_pred cCcccccccchhHHHHHHHh--CCCCC----HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEe
Q psy208 347 QHHVDQLDMNLRCVQLLEAA--FPGKP----QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLD 420 (443)
Q Consensus 347 Q~~~~~l~~~~~~~~~~~~~--~~~~~----~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLD 420 (443)
|++ .+.+..++.+++... ..+.. ...+.+.|..+|+. +..++++.+||||||||+.|||||+.+|++|+||
T Consensus 81 Q~~--~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~-~~~~~~i~qLSGGmrQRvGiARALa~eP~~LlLD 157 (259)
T COG4525 81 QNE--ALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLE-GAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLD 157 (259)
T ss_pred ccC--ccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcc-cccccceEeecchHHHHHHHHHHhhcCcceEeec
Confidence 985 456667777776432 22222 23467788999996 4568999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHcc
Q psy208 421 EPTNHLDIETIEALGKAINK 440 (443)
Q Consensus 421 EPTn~LD~~s~~~l~~~L~~ 440 (443)
||+..||.-+++.+.+.|.+
T Consensus 158 EPfgAlDa~tRe~mQelLld 177 (259)
T COG4525 158 EPFGALDALTREQMQELLLD 177 (259)
T ss_pred CchhhHHHHHHHHHHHHHHH
Confidence 99999999999999988754
No 304
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=4.7e-31 Score=268.87 Aligned_cols=162 Identities=28% Similarity=0.374 Sum_probs=138.7
Q ss_pred eEEEeeeEEEeCCCC-ceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-----------eEEE
Q psy208 276 ILQLSEVNFEYVPGK-PILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-----------LKFG 343 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~-~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~ig 343 (443)
.++++||+|+|++.. ++|+|+||++.+||++||+|++|||||||+.+|+|.++|++|+|..++. ..++
T Consensus 336 ~l~~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~ 415 (573)
T COG4987 336 ALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETIS 415 (573)
T ss_pred eeeeccceeecCCCccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHh
Confidence 799999999998654 7999999999999999999999999999999999999999999988641 2477
Q ss_pred EeccCcccccccchhHHHHHHHhCCCCCHHHHHHHHhcCCCChhhh----------hccCCCCCHHHHHHHHHHHHhccC
Q psy208 344 YFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLA----------LQFVGSLSGGQKSRVAFARMCMAA 413 (443)
Q Consensus 344 ~~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~----------~~~~~~LSgGekqRl~lA~al~~~ 413 (443)
+++|.+. + ...|..+++.-..++.+++++.+.+..+|+.+-.. ..-...|||||+||++|||+|+++
T Consensus 416 vl~Qr~h--l-F~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~d 492 (573)
T COG4987 416 VLTQRVH--L-FSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHD 492 (573)
T ss_pred hhccchH--H-HHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcC
Confidence 7888752 2 24577888877777788999999999999853222 223458999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHcc
Q psy208 414 PNFLVLDEPTNHLDIETIEALGKAINK 440 (443)
Q Consensus 414 p~lLiLDEPTn~LD~~s~~~l~~~L~~ 440 (443)
.+++||||||.|||+.+.+.+.+.|.+
T Consensus 493 apl~lLDEPTegLD~~TE~~vL~ll~~ 519 (573)
T COG4987 493 APLWLLDEPTEGLDPITERQVLALLFE 519 (573)
T ss_pred CCeEEecCCcccCChhhHHHHHHHHHH
Confidence 999999999999999999999988754
No 305
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.97 E-value=8.8e-31 Score=255.23 Aligned_cols=147 Identities=24% Similarity=0.267 Sum_probs=118.9
Q ss_pred CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCceEEEEeccCcccccccchhHHHHHHH--hC
Q psy208 290 KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEA--AF 367 (443)
Q Consensus 290 ~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ig~~~Q~~~~~l~~~~~~~~~~~~--~~ 367 (443)
+++|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+. +++++|.. .+....++.+++.. ..
T Consensus 37 ~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~g~--~~~~~~~~--~~~~~~tv~enl~~~~~~ 112 (264)
T PRK13546 37 FFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGE--VSVIAISA--GLSGQLTGIENIEFKMLC 112 (264)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCE--EeEEeccc--CCCCCCcHHHHHHHHHHH
Confidence 46999999999999999999999999999999999999999999988763 55666653 23334456665532 11
Q ss_pred CCCCHH----HHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 368 PGKPQE----EYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 368 ~~~~~~----~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
...... .+..++..+++. +..++++.+|||||+||++||++++.+|++|||||||++||+.+++.+.+.|.++
T Consensus 113 ~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~ 189 (264)
T PRK13546 113 MGFKRKEIKAMTPKIIEFSELG-EFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEF 189 (264)
T ss_pred cCCCHHHHHHHHHHHHHHcCCc-hhhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHH
Confidence 122222 234566777875 5678899999999999999999999999999999999999999999999998765
No 306
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.97 E-value=1e-31 Score=239.38 Aligned_cols=163 Identities=29% Similarity=0.446 Sum_probs=138.7
Q ss_pred CeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc---------------
Q psy208 275 PILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN--------------- 339 (443)
Q Consensus 275 ~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~--------------- 339 (443)
+.|+++|+.++|+ ...+|++|||+-..||+|.|||.+||||||+||||.=+..|+.|.|.+++.
T Consensus 5 ~~l~v~dlHK~~G-~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~a 83 (256)
T COG4598 5 NALEVEDLHKRYG-EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPA 83 (256)
T ss_pred cceehhHHHhhcc-cchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeC
Confidence 4589999999995 578999999999999999999999999999999999999999999987531
Q ss_pred ---------eEEEEeccCcccccccchhHHHHHHHhCC---CC----CHHHHHHHHhcCCCChhhhhccCCCCCHHHHHH
Q psy208 340 ---------LKFGYFSQHHVDQLDMNLRCVQLLEAAFP---GK----PQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSR 403 (443)
Q Consensus 340 ---------~~ig~~~Q~~~~~l~~~~~~~~~~~~~~~---~~----~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqR 403 (443)
.+.|+++|+. ++....|+++++..... +. ..+.+..+|.++|+. +..+.+|..|||||+||
T Consensus 84 d~~q~~r~Rs~L~mVFQ~F--NLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~-ek~~~YP~~LSGGQQQR 160 (256)
T COG4598 84 DKRQLQRLRTRLGMVFQHF--NLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIA-EKADAYPAHLSGGQQQR 160 (256)
T ss_pred CHHHHHHHHHHhhHhhhhc--chhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCch-hhhhcCccccCchHHHH
Confidence 2478889874 46667788887754211 11 234677899999996 56779999999999999
Q ss_pred HHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 404 VAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 404 l~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
++|||||+.+|.++++||||++|||+-.-.+...+.+.
T Consensus 161 ~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~L 198 (256)
T COG4598 161 VAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDL 198 (256)
T ss_pred HHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998888877654
No 307
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.97 E-value=2.7e-30 Score=253.92 Aligned_cols=157 Identities=24% Similarity=0.337 Sum_probs=123.2
Q ss_pred CCCeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCceEEEEeccCcccc
Q psy208 273 SPPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQ 352 (443)
Q Consensus 273 ~~~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ig~~~Q~~~~~ 352 (443)
+.+.|+++|+++. ++++|+|+||+|.+|++++|+|+||||||||+++|+|+++|++|+|.+.+ .++|++|++.
T Consensus 36 ~~~~l~i~nls~~---~~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g--~i~yv~q~~~-- 108 (282)
T cd03291 36 DDNNLFFSNLCLV---GAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG--RISFSSQFSW-- 108 (282)
T ss_pred CCCeEEEEEEEEe---cccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC--EEEEEeCccc--
Confidence 4567999999985 25699999999999999999999999999999999999999999998865 5999999863
Q ss_pred cccchhHHHHHHHhCCCCCHHHHHHHHhcCCCChh----------hhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCC
Q psy208 353 LDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGD----------LALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEP 422 (443)
Q Consensus 353 l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~----------~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEP 422 (443)
+.. .++.+++..... .....+...+..+++... ...+++..||||||||++||++++.+|++||||||
T Consensus 109 l~~-~tv~enl~~~~~-~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEP 186 (282)
T cd03291 109 IMP-GTIKENIIFGVS-YDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSP 186 (282)
T ss_pred ccc-cCHHHHhhcccc-cCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 222 366666542211 122233344444444211 12344679999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHH
Q psy208 423 TNHLDIETIEALGKAI 438 (443)
Q Consensus 423 Tn~LD~~s~~~l~~~L 438 (443)
|++||+.+++.+.+.+
T Consensus 187 t~gLD~~~~~~l~~~l 202 (282)
T cd03291 187 FGYLDVFTEKEIFESC 202 (282)
T ss_pred CccCCHHHHHHHHHHH
Confidence 9999999999888753
No 308
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.97 E-value=1.8e-30 Score=269.89 Aligned_cols=163 Identities=25% Similarity=0.336 Sum_probs=130.5
Q ss_pred CCeEEEeeeEEEeCCC--CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCceEEEEeccCccc
Q psy208 274 PPILQLSEVNFEYVPG--KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVD 351 (443)
Q Consensus 274 ~~~l~~~~l~~~y~~~--~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ig~~~Q~~~~ 351 (443)
.++++++||++.|+++ +++|+|+||+|.+|+++||+||||||||||+++|+|+++|++|+|.+.+... ++.+..
T Consensus 19 ~~mL~lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~--~i~~~~-- 94 (549)
T PRK13545 19 KPFDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAA--LIAISS-- 94 (549)
T ss_pred cceeEEEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEee--eEEecc--
Confidence 4689999999999753 4699999999999999999999999999999999999999999999876431 222221
Q ss_pred ccccchhHHHHHHH--hCCCCCH----HHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCC
Q psy208 352 QLDMNLRCVQLLEA--AFPGKPQ----EEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNH 425 (443)
Q Consensus 352 ~l~~~~~~~~~~~~--~~~~~~~----~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~ 425 (443)
.+....++.+++.. .+..... +.+..++..+++. +..++++.+||||||||++|||||+.+|++|||||||+|
T Consensus 95 ~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~-~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsg 173 (549)
T PRK13545 95 GLNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIG-KFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSV 173 (549)
T ss_pred ccCCCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCCh-hHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCccc
Confidence 12233455555432 1112222 2345678888885 567899999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHccc
Q psy208 426 LDIETIEALGKAINKY 441 (443)
Q Consensus 426 LD~~s~~~l~~~L~~~ 441 (443)
||+.++..+.+.|.++
T Consensus 174 LD~~sr~~LlelL~el 189 (549)
T PRK13545 174 GDQTFTKKCLDKMNEF 189 (549)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999998765
No 309
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=6e-31 Score=240.30 Aligned_cols=163 Identities=27% Similarity=0.427 Sum_probs=130.1
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-----------eEEEE
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-----------LKFGY 344 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~ig~ 344 (443)
||+++|++++.. ++.+++++||++.+||+++|+||||||||||||.|+|.+.|++|++.+++. ..-+.
T Consensus 1 mi~a~nls~~~~-Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raV 79 (259)
T COG4559 1 MIRAENLSYSLA-GRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAV 79 (259)
T ss_pred CeeeeeeEEEee-cceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhh
Confidence 588999999985 578999999999999999999999999999999999999999999988642 23577
Q ss_pred eccCcccccccchhHHHHHHH-hCCC----C-CHHH--HHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhcc----
Q psy208 345 FSQHHVDQLDMNLRCVQLLEA-AFPG----K-PQEE--YRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMA---- 412 (443)
Q Consensus 345 ~~Q~~~~~l~~~~~~~~~~~~-~~~~----~-~~~~--~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~---- 412 (443)
++|+....+.. ++.+.+.. ..+. . .+.. +...|+..++. ....+...+|||||||||.|||+|++
T Consensus 80 lpQ~s~laFpF--tv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~-~la~R~y~~LSGGEqQRVqlARvLaQl~~~ 156 (259)
T COG4559 80 LPQNSSLAFPF--TVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLS-GLAGRDYRTLSGGEQQRVQLARVLAQLWPP 156 (259)
T ss_pred cccCcccccce--EHHHHHHhcccccccCCCchhhHHHHHHHHHHcChh-hhhccchhhcCchHHHHHHHHHHHHHccCC
Confidence 88886444443 33333321 1111 1 1222 67788888876 46678888999999999999999976
Q ss_pred --CCCeEEEeCCCCCCCHHHHHHHHHHHcccc
Q psy208 413 --APNFLVLDEPTNHLDIETIEALGKAINKYT 442 (443)
Q Consensus 413 --~p~lLiLDEPTn~LD~~s~~~l~~~L~~~~ 442 (443)
++.+|+|||||+.||+..+..+.+..++|.
T Consensus 157 v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la 188 (259)
T COG4559 157 VPSGRWLFLDEPTSALDIAHQHHTLRLARQLA 188 (259)
T ss_pred CCCCceEEecCCccccchHHHHHHHHHHHHHH
Confidence 345999999999999999999999887763
No 310
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.97 E-value=3.1e-30 Score=275.99 Aligned_cols=156 Identities=20% Similarity=0.190 Sum_probs=127.5
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-----------eEEEE
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-----------LKFGY 344 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~ig~ 344 (443)
.|+++||+|+|++++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++. ..++|
T Consensus 322 ~i~~~~v~f~y~~~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 401 (547)
T PRK10522 322 TLELRNVTFAYQDNGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSA 401 (547)
T ss_pred eEEEEEEEEEeCCCCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhheEE
Confidence 5999999999975567999999999999999999999999999999999999999999988642 35999
Q ss_pred eccCcccccccchhHHHHHHHhCCCCCHHHHHHHHhcCCCChhhhhcc-----CCCCCHHHHHHHHHHHHhccCCCeEEE
Q psy208 345 FSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQF-----VGSLSGGQKSRVAFARMCMAAPNFLVL 419 (443)
Q Consensus 345 ~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~-----~~~LSgGekqRl~lA~al~~~p~lLiL 419 (443)
++|++. .++ .+..++ .+..+++.+.+.++.+++... ...+ ..+||||||||++||||++.+|++|||
T Consensus 402 v~q~~~-lf~--~ti~~n----~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~ilil 473 (547)
T PRK10522 402 VFTDFH-LFD--QLLGPE----GKPANPALVEKWLERLKMAHK-LELEDGRISNLKLSKGQKKRLALLLALAEERDILLL 473 (547)
T ss_pred EecChh-HHH--Hhhccc----cCchHHHHHHHHHHHcCCchh-hhccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999863 222 222222 122345567778888887532 2111 358999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHc
Q psy208 420 DEPTNHLDIETIEALGKAIN 439 (443)
Q Consensus 420 DEPTn~LD~~s~~~l~~~L~ 439 (443)
||||++||+++.+.+.+.|.
T Consensus 474 DE~ts~LD~~~~~~i~~~l~ 493 (547)
T PRK10522 474 DEWAADQDPHFRREFYQVLL 493 (547)
T ss_pred ECCCCCCCHHHHHHHHHHHH
Confidence 99999999999999888775
No 311
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.97 E-value=3.1e-30 Score=283.26 Aligned_cols=163 Identities=28% Similarity=0.410 Sum_probs=136.6
Q ss_pred eEEEeeeEEEeCCC-CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-----------eEEE
Q psy208 276 ILQLSEVNFEYVPG-KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-----------LKFG 343 (443)
Q Consensus 276 ~l~~~~l~~~y~~~-~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~ig 343 (443)
.|+++||+|+|+++ +++|+|+||+|++|++++|+|+||||||||+|+|+|+++|++|+|.+++. ..++
T Consensus 455 ~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i~ 534 (694)
T TIGR01846 455 AITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMG 534 (694)
T ss_pred eEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHhCe
Confidence 59999999999643 57999999999999999999999999999999999999999999998652 3589
Q ss_pred EeccCcccccccchhHHHHHHHhCCCCCHHHHHHHHhcCCCChh----------hhhccCCCCCHHHHHHHHHHHHhccC
Q psy208 344 YFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGD----------LALQFVGSLSGGQKSRVAFARMCMAA 413 (443)
Q Consensus 344 ~~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~----------~~~~~~~~LSgGekqRl~lA~al~~~ 413 (443)
|++|++. + ...|+.+++....+..+++++.+.+...++... .......+||||||||++||||++++
T Consensus 535 ~v~q~~~--l-f~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~ 611 (694)
T TIGR01846 535 VVLQENV--L-FSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGN 611 (694)
T ss_pred EEccCCe--e-hhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhC
Confidence 9999863 2 245778888654455567777777777665321 12234568999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 414 PNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 414 p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
|++|||||||++||+.+.+.+.+.|.++
T Consensus 612 ~~ililDEpts~LD~~~~~~i~~~l~~~ 639 (694)
T TIGR01846 612 PRILIFDEATSALDYESEALIMRNMREI 639 (694)
T ss_pred CCEEEEECCCcCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999765
No 312
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.97 E-value=1.1e-30 Score=280.51 Aligned_cols=162 Identities=30% Similarity=0.452 Sum_probs=136.1
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcC-----------ceEEEE
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR-----------NLKFGY 344 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~ig~ 344 (443)
-|+++||+|+|++++++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.+++ +..++|
T Consensus 328 ~I~f~~vsf~y~~~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~ 407 (567)
T COG1132 328 SIEFENVSFSYPGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGI 407 (567)
T ss_pred eEEEEEEEEEcCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhccE
Confidence 399999999997567899999999999999999999999999999999999999999999853 236999
Q ss_pred eccCcccccccchhHHHHHHHhCCCCCHHHHHHHHhcCCCCh------hhhhcc----CCCCCHHHHHHHHHHHHhccCC
Q psy208 345 FSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSG------DLALQF----VGSLSGGQKSRVAFARMCMAAP 414 (443)
Q Consensus 345 ~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~------~~~~~~----~~~LSgGekqRl~lA~al~~~p 414 (443)
++|++. +. ..|+.+++....++.+++++.+.+...+... +-.+.. ...||||||||++||||++.+|
T Consensus 408 V~Qd~~--LF-~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~ 484 (567)
T COG1132 408 VSQDPL--LF-SGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNP 484 (567)
T ss_pred Ecccce--ee-cccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCC
Confidence 999873 22 3688888876666567777777666554321 112333 4589999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHcc
Q psy208 415 NFLVLDEPTNHLDIETIEALGKAINK 440 (443)
Q Consensus 415 ~lLiLDEPTn~LD~~s~~~l~~~L~~ 440 (443)
++|||||||++||.++...+.+.+.+
T Consensus 485 ~ILILDEaTSalD~~tE~~I~~~l~~ 510 (567)
T COG1132 485 PILILDEATSALDTETEALIQDALKK 510 (567)
T ss_pred CEEEEeccccccCHHhHHHHHHHHHH
Confidence 99999999999999999999999863
No 313
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.97 E-value=4.8e-30 Score=275.71 Aligned_cols=163 Identities=25% Similarity=0.294 Sum_probs=135.0
Q ss_pred eEEEeeeEEEeCCC-CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-----------eEEE
Q psy208 276 ILQLSEVNFEYVPG-KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-----------LKFG 343 (443)
Q Consensus 276 ~l~~~~l~~~y~~~-~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~ig 343 (443)
.|+++|++|+|+++ +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++. ..++
T Consensus 313 ~I~~~~v~~~y~~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 392 (569)
T PRK10789 313 ELDVNIRQFTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLA 392 (569)
T ss_pred cEEEEEEEEECCCCCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheE
Confidence 48999999999643 57999999999999999999999999999999999999999999988642 3589
Q ss_pred EeccCcccccccchhHHHHHHHhCCCCCHHHHHHHHhcCCCChh----------hhhccCCCCCHHHHHHHHHHHHhccC
Q psy208 344 YFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGD----------LALQFVGSLSGGQKSRVAFARMCMAA 413 (443)
Q Consensus 344 ~~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~----------~~~~~~~~LSgGekqRl~lA~al~~~ 413 (443)
|++|++. +. ..|+.+++....+..+++++...+...++... ........||||||||++||||++.+
T Consensus 393 ~v~q~~~--lf-~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~ 469 (569)
T PRK10789 393 VVSQTPF--LF-SDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLN 469 (569)
T ss_pred EEccCCe--ec-cccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcC
Confidence 9999863 22 34777887644344566677777776665321 11234568999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 414 PNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 414 p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
|++|||||||++||+.+.+.+.+.|.++
T Consensus 470 ~~illlDEpts~LD~~~~~~i~~~l~~~ 497 (569)
T PRK10789 470 AEILILDDALSAVDGRTEHQILHNLRQW 497 (569)
T ss_pred CCEEEEECccccCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999998764
No 314
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.97 E-value=1.9e-30 Score=268.82 Aligned_cols=167 Identities=22% Similarity=0.386 Sum_probs=142.2
Q ss_pred CeEEEeeeEEEeCCC---CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCC----CceEEEcCc--------
Q psy208 275 PILQLSEVNFEYVPG---KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPT----AGTRTVHRN-------- 339 (443)
Q Consensus 275 ~~l~~~~l~~~y~~~---~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~----~G~i~~~~~-------- 339 (443)
++|+++||++.|... ..+++||||+|.+||++||+|.+||||||+.+.|.|++++. +|+|.+++.
T Consensus 4 ~lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~ 83 (539)
T COG1123 4 PLLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSER 83 (539)
T ss_pred ceEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHH
Confidence 489999999999632 25999999999999999999999999999999999999987 799977542
Q ss_pred -------eEEEEeccCcccccccchhHHHHHHHhC---C----CCCHHHHHHHHhcCCCChhhh-hccCCCCCHHHHHHH
Q psy208 340 -------LKFGYFSQHHVDQLDMNLRCVQLLEAAF---P----GKPQEEYRRQLGGFGVSGDLA-LQFVGSLSGGQKSRV 404 (443)
Q Consensus 340 -------~~ig~~~Q~~~~~l~~~~~~~~~~~~~~---~----~~~~~~~~~~L~~~gl~~~~~-~~~~~~LSgGekqRl 404 (443)
..|+|+||++...+++..++...+...+ . .....++.++|..+|++.... +++|++|||||||||
T Consensus 84 ~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv 163 (539)
T COG1123 84 EMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRV 163 (539)
T ss_pred HHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHH
Confidence 4699999999888888777666554321 1 112456778999999976544 369999999999999
Q ss_pred HHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 405 AFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 405 ~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
.||+||+.+|++||+||||.+||+.++..+.++|++.
T Consensus 164 ~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l 200 (539)
T COG1123 164 MIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDL 200 (539)
T ss_pred HHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999875
No 315
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.97 E-value=8.8e-31 Score=249.49 Aligned_cols=146 Identities=24% Similarity=0.442 Sum_probs=126.9
Q ss_pred CeEEEeeeEEEeCCC--------CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCceEEEEec
Q psy208 275 PILQLSEVNFEYVPG--------KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFS 346 (443)
Q Consensus 275 ~~l~~~~l~~~y~~~--------~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ig~~~ 346 (443)
++++++|+++.|+-+ ..+++||||+|.+||++||||.||||||||-|+|+|+++|++|+|.+.+..-
T Consensus 3 ~ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i----- 77 (268)
T COG4608 3 PLLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDI----- 77 (268)
T ss_pred ceEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcch-----
Confidence 579999999999632 2689999999999999999999999999999999999999999998765320
Q ss_pred cCcccccccchhHHHHHHHhCCCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCC
Q psy208 347 QHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHL 426 (443)
Q Consensus 347 Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~L 426 (443)
..+. .....+.+.++|..+|+..+..++++++|||||+||++|||||+.+|+++++||||+.|
T Consensus 78 ----~~~~-------------~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~IARALal~P~liV~DEpvSaL 140 (268)
T COG4608 78 ----TKLS-------------KEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSAL 140 (268)
T ss_pred ----hhcc-------------hhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhHHHHHHHhhCCcEEEecCchhhc
Confidence 0011 11124568899999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHcccc
Q psy208 427 DIETIEALGKAINKYT 442 (443)
Q Consensus 427 D~~s~~~l~~~L~~~~ 442 (443)
|...+.++.++|.+++
T Consensus 141 DvSiqaqIlnLL~dlq 156 (268)
T COG4608 141 DVSVQAQILNLLKDLQ 156 (268)
T ss_pred chhHHHHHHHHHHHHH
Confidence 9999999999998754
No 316
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.97 E-value=2.4e-30 Score=250.04 Aligned_cols=155 Identities=28% Similarity=0.412 Sum_probs=126.2
Q ss_pred EEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-----------eEEEEec
Q psy208 278 QLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-----------LKFGYFS 346 (443)
Q Consensus 278 ~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~ig~~~ 346 (443)
+++||++. .+|+|+||+|.+|++++|+|+||||||||+++|+|+++ .+|+|.+.+. ..++|++
T Consensus 2 ~~~~l~~~-----~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~-~~G~i~~~g~~i~~~~~~~~~~~i~~v~ 75 (248)
T PRK03695 2 QLNDVAVS-----TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP-GSGSIQFAGQPLEAWSAAELARHRAYLS 75 (248)
T ss_pred cccccchh-----ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-CCeEEEECCEecCcCCHHHHhhheEEec
Confidence 57788874 27999999999999999999999999999999999986 4999987542 2489999
Q ss_pred cCcccccccchhHHHHHHHhCC-CCC----HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhcc-------CC
Q psy208 347 QHHVDQLDMNLRCVQLLEAAFP-GKP----QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMA-------AP 414 (443)
Q Consensus 347 Q~~~~~l~~~~~~~~~~~~~~~-~~~----~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~-------~p 414 (443)
|++. +....++.+++..... ... ...+.++++.+++. +..++++..||||||||++||++++. +|
T Consensus 76 q~~~--~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p 152 (248)
T PRK03695 76 QQQT--PPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLD-DKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAG 152 (248)
T ss_pred ccCc--cCCCccHHHHHHhcCccCCCcHHHHHHHHHHHHHcCCH-hHhcCCcccCCHHHHHHHHHHHHHhccccccCCCC
Confidence 9853 2334466666543211 111 23567889999985 56788999999999999999999997 67
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 415 NFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 415 ~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
++|||||||++||+.++..+.+.|.++
T Consensus 153 ~llllDEPt~~LD~~~~~~l~~~L~~~ 179 (248)
T PRK03695 153 QLLLLDEPMNSLDVAQQAALDRLLSEL 179 (248)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999875
No 317
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.97 E-value=2e-30 Score=237.71 Aligned_cols=114 Identities=32% Similarity=0.376 Sum_probs=103.6
Q ss_pred eeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCceEEEEeccCcccccccchhH
Q psy208 280 SEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRC 359 (443)
Q Consensus 280 ~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ig~~~Q~~~~~l~~~~~~ 359 (443)
.||+++|+ +++++.++ |+|++|++++|+||||||||||+|+|+|+++|++|+|.+.+ ..++|++|+..
T Consensus 4 ~~l~~~~~-~~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g-~~i~~~~q~~~--------- 71 (177)
T cd03222 4 PDCVKRYG-VFFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDG-ITPVYKPQYID--------- 71 (177)
T ss_pred CCeEEEEC-CEEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECC-EEEEEEcccCC---------
Confidence 58999996 56788884 99999999999999999999999999999999999999865 35888887531
Q ss_pred HHHHHHhCCCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHc
Q psy208 360 VQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAIN 439 (443)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~ 439 (443)
||||||||++|||+++.+|+++||||||++||+.+++.+.+.|.
T Consensus 72 ------------------------------------LSgGq~qrv~laral~~~p~lllLDEPts~LD~~~~~~l~~~l~ 115 (177)
T cd03222 72 ------------------------------------LSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIR 115 (177)
T ss_pred ------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999887
Q ss_pred cc
Q psy208 440 KY 441 (443)
Q Consensus 440 ~~ 441 (443)
++
T Consensus 116 ~~ 117 (177)
T cd03222 116 RL 117 (177)
T ss_pred HH
Confidence 64
No 318
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.97 E-value=3.1e-30 Score=245.37 Aligned_cols=143 Identities=36% Similarity=0.516 Sum_probs=117.6
Q ss_pred EEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc------eEEEEeccCcccccccchhHHHHHHHh-----
Q psy208 298 LGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN------LKFGYFSQHHVDQLDMNLRCVQLLEAA----- 366 (443)
Q Consensus 298 l~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------~~ig~~~Q~~~~~l~~~~~~~~~~~~~----- 366 (443)
|+|++|++++|+|+||||||||+++|+|+++|++|+|.+++. ..++|++|++........++.+++...
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~ 80 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRTGHI 80 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhcccccc
Confidence 578999999999999999999999999999999999998753 359999998643222334555555321
Q ss_pred --CCC---CCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 367 --FPG---KPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 367 --~~~---~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
+.. .....+..+++.+++. +..++++.+||||||||++||++++.+|++|||||||++||+.+++.+.+.|.++
T Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~~l~~~ 159 (223)
T TIGR03771 81 GWLRRPCVADFAAVRDALRRVGLT-ELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIEL 159 (223)
T ss_pred ccccCCcHHHHHHHHHHHHHhCCc-hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 101 1123567889999986 5678899999999999999999999999999999999999999999999999865
No 319
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=3.7e-30 Score=231.33 Aligned_cols=161 Identities=29% Similarity=0.457 Sum_probs=133.1
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCce-E---------EEEe
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNL-K---------FGYF 345 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~-~---------ig~~ 345 (443)
+++.+|++...+ ..++|.++||++.+||.+-|.||||||||||||+|+|+.+|++|+|.+.+.. . +-|+
T Consensus 2 ~L~a~~L~~~R~-e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~~~~~~l~yL 80 (209)
T COG4133 2 MLEAENLSCERG-ERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQALLYL 80 (209)
T ss_pred cchhhhhhhccC-cceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchhhHHHHHHHh
Confidence 478899998874 6789999999999999999999999999999999999999999999986321 1 1111
Q ss_pred ccCcccccccchhHHHHHHH--hCCC-CCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCC
Q psy208 346 SQHHVDQLDMNLRCVQLLEA--AFPG-KPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEP 422 (443)
Q Consensus 346 ~Q~~~~~l~~~~~~~~~~~~--~~~~-~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEP 422 (443)
- +...+....|+.+++.- .+.+ .+...+.+.+..+|+. ...+.|+.+||.|||+||+|||..++.++++|||||
T Consensus 81 G--H~~giK~eLTa~ENL~F~~~~~~~~~~~~i~~Al~~vgL~-g~~dlp~~~LSAGQqRRvAlArL~ls~~pLWiLDEP 157 (209)
T COG4133 81 G--HQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLA-GLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEP 157 (209)
T ss_pred h--ccccccchhhHHHHHHHHHHHhCCCchhhHHHHHHHcCcc-cccccchhhcchhHHHHHHHHHHHcCCCCceeecCc
Confidence 1 11234566788887642 2222 3456788999999997 578899999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHcc
Q psy208 423 TNHLDIETIEALGKAINK 440 (443)
Q Consensus 423 Tn~LD~~s~~~l~~~L~~ 440 (443)
|++||...+..|...+..
T Consensus 158 ~taLDk~g~a~l~~l~~~ 175 (209)
T COG4133 158 FTALDKEGVALLTALMAA 175 (209)
T ss_pred ccccCHHHHHHHHHHHHH
Confidence 999999999999887754
No 320
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.97 E-value=5.8e-30 Score=263.58 Aligned_cols=165 Identities=29% Similarity=0.404 Sum_probs=142.7
Q ss_pred CCeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc------------eE
Q psy208 274 PPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN------------LK 341 (443)
Q Consensus 274 ~~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------------~~ 341 (443)
.++++++|++|+|+ +.++|+++||+|.+||++||+|.||||||||+|+|+|.++|++|+|.+++. ..
T Consensus 6 ~~ll~~~~i~K~Fg-gV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~G 84 (500)
T COG1129 6 PPLLELRGISKSFG-GVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAG 84 (500)
T ss_pred cceeeeecceEEcC-CceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCC
Confidence 46899999999996 578999999999999999999999999999999999999999999998742 34
Q ss_pred EEEeccCcccccccchhHHHHHHH-hCCC-----C----CHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhc
Q psy208 342 FGYFSQHHVDQLDMNLRCVQLLEA-AFPG-----K----PQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCM 411 (443)
Q Consensus 342 ig~~~Q~~~~~l~~~~~~~~~~~~-~~~~-----~----~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~ 411 (443)
|+.++|+. .+.++.++.+++.- ..+. . ....+..+|..+|+..+ .+.++++||.||||.|.||||+.
T Consensus 85 I~~V~QEl--~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~-~~~~v~~LsiaqrQ~VeIArAl~ 161 (500)
T COG1129 85 IATVHQEL--SLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDID-PDTLVGDLSIAQRQMVEIARALS 161 (500)
T ss_pred cEEEeech--hccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCC-hhhhhhhCCHHHHHHHHHHHHHh
Confidence 88899986 47778888888742 1111 1 13457788999998633 78999999999999999999999
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHcccc
Q psy208 412 AAPNFLVLDEPTNHLDIETIEALGKAINKYT 442 (443)
Q Consensus 412 ~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~~ 442 (443)
.+++||||||||+.|+....+.|.+.+++++
T Consensus 162 ~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk 192 (500)
T COG1129 162 FDARVLILDEPTAALTVKETERLFDLIRRLK 192 (500)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998764
No 321
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.97 E-value=1.2e-29 Score=296.84 Aligned_cols=166 Identities=26% Similarity=0.381 Sum_probs=141.4
Q ss_pred CCeEEEeeeEEEeC-CCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc----------eEE
Q psy208 274 PPILQLSEVNFEYV-PGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN----------LKF 342 (443)
Q Consensus 274 ~~~l~~~~l~~~y~-~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~----------~~i 342 (443)
.+.|+++||++.|+ +++++++|+||+|.+|++++|+|+||||||||+++|+|+++|++|+|.+.+. ..+
T Consensus 926 ~~~L~I~nLsK~y~~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~~~~~r~~I 1005 (2272)
T TIGR01257 926 VPGVCVKNLVKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSL 1005 (2272)
T ss_pred CceEEEEeEEEEecCCCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcchHHHHhhcE
Confidence 46899999999995 3468999999999999999999999999999999999999999999988642 358
Q ss_pred EEeccCcccccccchhHHHHHHH--hCCCCC----HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCe
Q psy208 343 GYFSQHHVDQLDMNLRCVQLLEA--AFPGKP----QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNF 416 (443)
Q Consensus 343 g~~~Q~~~~~l~~~~~~~~~~~~--~~~~~~----~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~l 416 (443)
||++|++. +....++.+++.. ...+.. .+++.+++..+|+. +..++++++|||||||||+||+||+.+|++
T Consensus 1006 G~~pQ~~~--L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~-~~~~~~~~~LSGGqKQRLsLArALi~~PkV 1082 (2272)
T TIGR01257 1006 GMCPQHNI--LFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLH-HKRNEEAQDLSGGMQRKLSVAIAFVGDAKV 1082 (2272)
T ss_pred EEEecCCc--CCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc-hhhcCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence 99999853 4455677776642 112221 34577889999996 567899999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHcccc
Q psy208 417 LVLDEPTNHLDIETIEALGKAINKYT 442 (443)
Q Consensus 417 LiLDEPTn~LD~~s~~~l~~~L~~~~ 442 (443)
|||||||+|||+.+++.+.+.|++++
T Consensus 1083 LLLDEPTSGLDp~sr~~l~~lL~~l~ 1108 (2272)
T TIGR01257 1083 VVLDEPTSGVDPYSRRSIWDLLLKYR 1108 (2272)
T ss_pred EEEECCCcCCCHHHHHHHHHHHHHHh
Confidence 99999999999999999999998763
No 322
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.97 E-value=5.6e-30 Score=248.27 Aligned_cols=157 Identities=22% Similarity=0.292 Sum_probs=123.2
Q ss_pred eeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEE-----------EcC----------
Q psy208 280 SEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRT-----------VHR---------- 338 (443)
Q Consensus 280 ~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~-----------~~~---------- 338 (443)
.+|+++|++.+.+++|+|+ +.+|++++|+||||||||||+|+|+|+++|++|+|. +.+
T Consensus 4 ~~~~~~y~~~~~~l~~i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~~ 82 (255)
T cd03236 4 DEPVHRYGPNSFKLHRLPV-PREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKL 82 (255)
T ss_pred cCcceeecCcchhhhcCCC-CCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhHHh
Confidence 4789999644469999995 999999999999999999999999999999999995 211
Q ss_pred ---ceEEEEeccCcccccccchhHHHHHHHhCCC-CCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCC
Q psy208 339 ---NLKFGYFSQHHVDQLDMNLRCVQLLEAAFPG-KPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAP 414 (443)
Q Consensus 339 ---~~~ig~~~Q~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p 414 (443)
...++|++|... ... . +....+...... .....+.+++..+|+. +..++++..||||||||++||++++.+|
T Consensus 83 ~~~~~~i~~~~~~~~-~~~-~-~~~~~i~~~l~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LS~G~~qrv~laral~~~p 158 (255)
T cd03236 83 LEGDVKVIVKPQYVD-LIP-K-AVKGKVGELLKKKDERGKLDELVDQLELR-HVLDRNIDQLSGGELQRVAIAAALARDA 158 (255)
T ss_pred hhcccceeeecchhc-cCc-h-HHHHHHHHHhchhHHHHHHHHHHHHcCCc-hhhcCChhhCCHHHHHHHHHHHHHHhCC
Confidence 113567777642 221 1 222222221111 1235677889999986 4578899999999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 415 NFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 415 ~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
+++||||||++||+.++..+.+.|.++
T Consensus 159 ~illlDEPts~LD~~~~~~l~~~l~~l 185 (255)
T cd03236 159 DFYFFDEPSSYLDIKQRLNAARLIREL 185 (255)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999888764
No 323
>KOG0055|consensus
Probab=99.96 E-value=4.2e-30 Score=283.75 Aligned_cols=164 Identities=29% Similarity=0.410 Sum_probs=135.0
Q ss_pred CeEEEeeeEEEeCCCC--ceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-----------eE
Q psy208 275 PILQLSEVNFEYVPGK--PILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-----------LK 341 (443)
Q Consensus 275 ~~l~~~~l~~~y~~~~--~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~ 341 (443)
-.++++||+|+||..+ ++|+++||.|++|+.++|||||||||||++++|.+++.|++|+|.+++. .+
T Consensus 349 g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~ 428 (1228)
T KOG0055|consen 349 GEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQ 428 (1228)
T ss_pred cceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhh
Confidence 3599999999997543 6999999999999999999999999999999999999999999998752 36
Q ss_pred EEEeccCcccccccchhHHHHHHHhCCCCCHHHHHHHHhcCCCC------hh----hhhccCCCCCHHHHHHHHHHHHhc
Q psy208 342 FGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVS------GD----LALQFVGSLSGGQKSRVAFARMCM 411 (443)
Q Consensus 342 ig~~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~------~~----~~~~~~~~LSgGekqRl~lA~al~ 411 (443)
||.|.|+|. ....++.+++....++.+.+++.+.....+.. ++ ..-....+||||||||++|||||+
T Consensus 429 iglV~QePv---lF~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv 505 (1228)
T KOG0055|consen 429 IGLVSQEPV---LFATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALV 505 (1228)
T ss_pred cCeeeechh---hhcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHH
Confidence 999999984 23567888887666666666666555433321 01 111233469999999999999999
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 412 AAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 412 ~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
.+|+||||||||++||+++...+.++|.+.
T Consensus 506 ~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~ 535 (1228)
T KOG0055|consen 506 RNPKILLLDEATSALDAESERVVQEALDKA 535 (1228)
T ss_pred hCCCEEEecCcccccCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999764
No 324
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.96 E-value=1.1e-29 Score=272.12 Aligned_cols=157 Identities=19% Similarity=0.204 Sum_probs=126.6
Q ss_pred eEEEeeeEEEeCCC----CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-----------e
Q psy208 276 ILQLSEVNFEYVPG----KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-----------L 340 (443)
Q Consensus 276 ~l~~~~l~~~y~~~----~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~ 340 (443)
.|+++||+|+|++. +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++. .
T Consensus 337 ~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~ 416 (555)
T TIGR01194 337 SIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRD 416 (555)
T ss_pred eEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHh
Confidence 59999999999642 36999999999999999999999999999999999999999999988641 3
Q ss_pred EEEEeccCcccccccchhHHHHHHHhCCCCCHHHHHHHHhcCCCChhhhh-----ccCCCCCHHHHHHHHHHHHhccCCC
Q psy208 341 KFGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLAL-----QFVGSLSGGQKSRVAFARMCMAAPN 415 (443)
Q Consensus 341 ~ig~~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~-----~~~~~LSgGekqRl~lA~al~~~p~ 415 (443)
.++|++|++. .+. .+..++. .+...++++.++++.+++...... ....+||||||||++||||++.+|+
T Consensus 417 ~i~~v~q~~~-lf~--~ti~~n~---~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~~~~ 490 (555)
T TIGR01194 417 LFSAIFADFH-LFD--DLIGPDE---GEHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRP 490 (555)
T ss_pred hCcEEccChh-hhh--hhhhccc---ccchhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 5899999863 122 2332322 233356677888888887532111 1236799999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHH
Q psy208 416 FLVLDEPTNHLDIETIEALGKAI 438 (443)
Q Consensus 416 lLiLDEPTn~LD~~s~~~l~~~L 438 (443)
+|||||||++||+.+.+.+.+.+
T Consensus 491 ililDE~ts~LD~~~~~~i~~~l 513 (555)
T TIGR01194 491 ILLFDEWAADQDPAFKRFFYEEL 513 (555)
T ss_pred EEEEeCCccCCCHHHHHHHHHHH
Confidence 99999999999999999987754
No 325
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.96 E-value=9.1e-31 Score=236.53 Aligned_cols=162 Identities=25% Similarity=0.434 Sum_probs=133.5
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCce-----------EEEE
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNL-----------KFGY 344 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~-----------~ig~ 344 (443)
|++++||+++|+ ++.+++++|++|++|.+++|+|||||||||||.+++.++++++|+|++.+.. +++.
T Consensus 1 MI~i~nv~K~y~-~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lSI 79 (252)
T COG4604 1 MITIENVSKSYG-TKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLSI 79 (252)
T ss_pred CeeehhhhHhhC-CEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHHH
Confidence 578999999995 6889999999999999999999999999999999999999999999987532 2444
Q ss_pred eccCcccccccchhHHHHHHH-hCCC-------CCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCe
Q psy208 345 FSQHHVDQLDMNLRCVQLLEA-AFPG-------KPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNF 416 (443)
Q Consensus 345 ~~Q~~~~~l~~~~~~~~~~~~-~~~~-------~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~l 416 (443)
+-|.. .+....|+.+.+.- .||- .+...+.+.++.+.+. +..+++..+||||||||+-+|..++++.+.
T Consensus 80 LkQ~N--~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~-~l~dryLd~LSGGQrQRAfIAMVlaQdTdy 156 (252)
T COG4604 80 LKQEN--HINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLE-DLSDRYLDELSGGQRQRAFIAMVLAQDTDY 156 (252)
T ss_pred HHhhc--hhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhccc-chHHHhHHhcccchhhhhhhheeeeccCcE
Confidence 55543 23445555555432 2221 2234567788888886 678899999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 417 LVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 417 LiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
++||||.|+||+...-.+++.|++.
T Consensus 157 vlLDEPLNNLDmkHsv~iMk~Lrrl 181 (252)
T COG4604 157 VLLDEPLNNLDMKHSVQIMKILRRL 181 (252)
T ss_pred EEecCcccccchHHHHHHHHHHHHH
Confidence 9999999999999999999888753
No 326
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.96 E-value=2.6e-29 Score=294.00 Aligned_cols=164 Identities=29% Similarity=0.446 Sum_probs=138.4
Q ss_pred CeEEEeeeEEEeCCC-CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc----------eEEE
Q psy208 275 PILQLSEVNFEYVPG-KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN----------LKFG 343 (443)
Q Consensus 275 ~~l~~~~l~~~y~~~-~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~----------~~ig 343 (443)
.+|+++||++.|++. +++++|+||+|.+||++||+||||||||||+|+|+|+++|++|+|.+.+. ..+|
T Consensus 1936 ~~L~v~nLsK~Y~~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~~~~~r~~IG 2015 (2272)
T TIGR01257 1936 DILRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNMG 2015 (2272)
T ss_pred ceEEEEEEEEEECCCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcchHHHHhhhEE
Confidence 479999999999642 57999999999999999999999999999999999999999999988641 2499
Q ss_pred EeccCcccccccchhHHHHHHH--hCCCCC----HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeE
Q psy208 344 YFSQHHVDQLDMNLRCVQLLEA--AFPGKP----QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFL 417 (443)
Q Consensus 344 ~~~Q~~~~~l~~~~~~~~~~~~--~~~~~~----~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lL 417 (443)
|++|+. .+....++.+.+.. ...+.. .+.+..+++.+++. +..+++++.|||||||||+||+||+.+|+||
T Consensus 2016 y~pQ~~--~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~-~~~dk~~~~LSGGqKqRLslA~ALi~~P~VL 2092 (2272)
T TIGR01257 2016 YCPQFD--AIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLS-LYADRLAGTYSGGNKRKLSTAIALIGCPPLV 2092 (2272)
T ss_pred EEeccc--cCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCH-HHhcCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 999975 34445666666532 111222 23456789999996 5778999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHccc
Q psy208 418 VLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 418 iLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
||||||+|||+.+++.+.+.|.+.
T Consensus 2093 LLDEPTsGLDp~sr~~l~~lL~~l 2116 (2272)
T TIGR01257 2093 LLDEPTTGMDPQARRMLWNTIVSI 2116 (2272)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999998764
No 327
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.96 E-value=1.7e-29 Score=293.82 Aligned_cols=163 Identities=26% Similarity=0.434 Sum_probs=137.1
Q ss_pred eEEEeeeEEEeCC--CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCC------------------------
Q psy208 276 ILQLSEVNFEYVP--GKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISP------------------------ 329 (443)
Q Consensus 276 ~l~~~~l~~~y~~--~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p------------------------ 329 (443)
-|+++||+|+|++ +.++|+|+||+|++|+++|||||+|||||||+++|+|+++|
T Consensus 1165 ~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~ 1244 (1466)
T PTZ00265 1165 KIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQG 1244 (1466)
T ss_pred eEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccccccccccccc
Confidence 4999999999963 34799999999999999999999999999999999999998
Q ss_pred ------------------------------CCceEEEcC-----------ceEEEEeccCcccccccchhHHHHHHHhCC
Q psy208 330 ------------------------------TAGTRTVHR-----------NLKFGYFSQHHVDQLDMNLRCVQLLEAAFP 368 (443)
Q Consensus 330 ------------------------------~~G~i~~~~-----------~~~ig~~~Q~~~~~l~~~~~~~~~~~~~~~ 368 (443)
++|+|.+++ +..+||++|++. + ...|+.+++....+
T Consensus 1245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~--L-F~gTIreNI~~g~~ 1321 (1466)
T PTZ00265 1245 DEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPM--L-FNMSIYENIKFGKE 1321 (1466)
T ss_pred ccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCc--c-ccccHHHHHhcCCC
Confidence 599998864 236999999974 2 25688888876555
Q ss_pred CCCHHHHHHHHhcCCCCh------hhhhc----cCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHH
Q psy208 369 GKPQEEYRRQLGGFGVSG------DLALQ----FVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAI 438 (443)
Q Consensus 369 ~~~~~~~~~~L~~~gl~~------~~~~~----~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L 438 (443)
..+++++...+...++.. +-.+. ....||||||||++|||||+++|+||||||||++||.++.+.+.++|
T Consensus 1322 ~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L 1401 (1466)
T PTZ00265 1322 DATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTI 1401 (1466)
T ss_pred CCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHH
Confidence 567778888777766532 11122 34579999999999999999999999999999999999999999998
Q ss_pred ccc
Q psy208 439 NKY 441 (443)
Q Consensus 439 ~~~ 441 (443)
.+.
T Consensus 1402 ~~~ 1404 (1466)
T PTZ00265 1402 VDI 1404 (1466)
T ss_pred HHH
Confidence 765
No 328
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.96 E-value=1.5e-29 Score=256.01 Aligned_cols=164 Identities=24% Similarity=0.380 Sum_probs=143.3
Q ss_pred CeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc------------eEE
Q psy208 275 PILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN------------LKF 342 (443)
Q Consensus 275 ~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------------~~i 342 (443)
+.+++++++|.|+ +..+.++|||+|.+||+.||+|.||||||||+++|.|+++|++|+|.++++ ..|
T Consensus 3 ~~l~~~~itK~f~-~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GI 81 (501)
T COG3845 3 PALEMRGITKRFP-GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGI 81 (501)
T ss_pred ceEEEeccEEEcC-CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcCC
Confidence 5799999999997 678999999999999999999999999999999999999999999998753 359
Q ss_pred EEeccCcccccccchhHHHHHHHhCCC-----C----CHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccC
Q psy208 343 GYFSQHHVDQLDMNLRCVQLLEAAFPG-----K----PQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAA 413 (443)
Q Consensus 343 g~~~Q~~~~~l~~~~~~~~~~~~~~~~-----~----~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~ 413 (443)
|++.|++ .+.++.|+.+++.-.... . ..+++.++..++|+. -..+.++.+||-||||||.|.++|+.+
T Consensus 82 GMVhQHF--~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~-vdp~~~V~dLsVG~qQRVEIlKaLyr~ 158 (501)
T COG3845 82 GMVHQHF--MLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLP-VDPDAKVADLSVGEQQRVEILKALYRG 158 (501)
T ss_pred cEEeecc--ccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCC-CCccceeecCCcchhHHHHHHHHHhcC
Confidence 9999985 467788988887543221 1 234567788899986 456899999999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHcccc
Q psy208 414 PNFLVLDEPTNHLDIETIEALGKAINKYT 442 (443)
Q Consensus 414 p~lLiLDEPTn~LD~~s~~~l~~~L~~~~ 442 (443)
|++|||||||+.|-|...+.|.+.|++++
T Consensus 159 a~iLILDEPTaVLTP~E~~~lf~~l~~l~ 187 (501)
T COG3845 159 ARLLILDEPTAVLTPQEADELFEILRRLA 187 (501)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998764
No 329
>PLN03073 ABC transporter F family; Provisional
Probab=99.96 E-value=1.4e-29 Score=276.66 Aligned_cols=158 Identities=23% Similarity=0.356 Sum_probs=121.3
Q ss_pred CCeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCC---CCCCceEEEcCceEEEEeccCcc
Q psy208 274 PPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGII---SPTAGTRTVHRNLKFGYFSQHHV 350 (443)
Q Consensus 274 ~~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~---~p~~G~i~~~~~~~ig~~~Q~~~ 350 (443)
..+|+++|++++|+ ++++|+|+||+|.+|+++||||+||||||||||+|+|.. .|++|+| +|++|+..
T Consensus 175 ~~~I~i~nls~~y~-~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I--------~~~~Q~~~ 245 (718)
T PLN03073 175 IKDIHMENFSISVG-GRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQI--------LHVEQEVV 245 (718)
T ss_pred ceeEEEceEEEEeC-CCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEE--------EEEeccCC
Confidence 45799999999996 567999999999999999999999999999999999964 4566655 44444321
Q ss_pred cccccch-----------h--------H--------------------------------HHHHHHhC---C-CCCHHHH
Q psy208 351 DQLDMNL-----------R--------C--------------------------------VQLLEAAF---P-GKPQEEY 375 (443)
Q Consensus 351 ~~l~~~~-----------~--------~--------------------------------~~~~~~~~---~-~~~~~~~ 375 (443)
..+.+. . . +..+...+ . ...+.++
T Consensus 246 -g~~~t~~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~ 324 (718)
T PLN03073 246 -GDDTTALQCVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARA 324 (718)
T ss_pred -CCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHH
Confidence 000000 0 0 00000000 0 0123456
Q ss_pred HHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 376 RRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 376 ~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
..+|..+||.....++++.+|||||||||+||++|+.+|++|||||||||||+.++.+|.+.|++|
T Consensus 325 ~~~L~~lgl~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~ 390 (718)
T PLN03073 325 ASILAGLSFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW 390 (718)
T ss_pred HHHHHHCCCChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc
Confidence 678888999766678999999999999999999999999999999999999999999999999876
No 330
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.96 E-value=2.4e-29 Score=230.36 Aligned_cols=121 Identities=26% Similarity=0.325 Sum_probs=102.5
Q ss_pred CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCce------EEEEeccCcccccccchhHHHH
Q psy208 289 GKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNL------KFGYFSQHHVDQLDMNLRCVQL 362 (443)
Q Consensus 289 ~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~------~ig~~~Q~~~~~l~~~~~~~~~ 362 (443)
..++|+|+||+|.+|++++|+||||||||||||+|. +++|++.+.... .++|++|
T Consensus 7 ~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il----~~~G~v~~~~~~~~~~~~~~~~~~q--------------- 67 (176)
T cd03238 7 NVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGL----YASGKARLISFLPKFSRNKLIFIDQ--------------- 67 (176)
T ss_pred eeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHh----hcCCcEEECCcccccccccEEEEhH---------------
Confidence 357999999999999999999999999999999996 368988765331 1223222
Q ss_pred HHHhCCCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccC--CCeEEEeCCCCCCCHHHHHHHHHHHcc
Q psy208 363 LEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAA--PNFLVLDEPTNHLDIETIEALGKAINK 440 (443)
Q Consensus 363 ~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~--p~lLiLDEPTn~LD~~s~~~l~~~L~~ 440 (443)
.+.+..+++.....++++.+||||||||++||++++.+ |++|||||||++||+.+++.+.+.|++
T Consensus 68 -------------~~~l~~~~L~~~~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~ 134 (176)
T cd03238 68 -------------LQFLIDVGLGYLTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKG 134 (176)
T ss_pred -------------HHHHHHcCCCccccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 35678888864447889999999999999999999999 999999999999999999999999876
Q ss_pred c
Q psy208 441 Y 441 (443)
Q Consensus 441 ~ 441 (443)
+
T Consensus 135 ~ 135 (176)
T cd03238 135 L 135 (176)
T ss_pred H
Confidence 5
No 331
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=3.7e-29 Score=224.95 Aligned_cols=125 Identities=35% Similarity=0.578 Sum_probs=101.7
Q ss_pred EeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCceEEEEeccCcccccccchh
Q psy208 279 LSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLR 358 (443)
Q Consensus 279 ~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ig~~~Q~~~~~l~~~~~ 358 (443)
++|+++.|+ ++++|+++||+|.+|++++|+|+||||||||+++|+|+++|++|+|++.+. .+. .. .
T Consensus 2 ~~~~~~~~~-~~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~-~~~---~~-----~---- 67 (157)
T cd00267 2 IENLSFRYG-GRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGK-DIA---KL-----P---- 67 (157)
T ss_pred eEEEEEEeC-CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCE-Ecc---cC-----C----
Confidence 679999996 457999999999999999999999999999999999999999999987642 111 00 0
Q ss_pred HHHHHHHhCCCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHH
Q psy208 359 CVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAI 438 (443)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L 438 (443)
.. .....+++. .+||+||+||++||++++.+|+++||||||++||+.++..+.+.|
T Consensus 68 -------------~~---~~~~~i~~~--------~qlS~G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l 123 (157)
T cd00267 68 -------------LE---ELRRRIGYV--------PQLSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELL 123 (157)
T ss_pred -------------HH---HHHhceEEE--------eeCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHH
Confidence 00 000111110 119999999999999999999999999999999999999999999
Q ss_pred ccc
Q psy208 439 NKY 441 (443)
Q Consensus 439 ~~~ 441 (443)
.++
T Consensus 124 ~~~ 126 (157)
T cd00267 124 REL 126 (157)
T ss_pred HHH
Confidence 765
No 332
>KOG0054|consensus
Probab=99.96 E-value=7.2e-27 Score=263.50 Aligned_cols=161 Identities=22% Similarity=0.335 Sum_probs=130.0
Q ss_pred eEEEeeeEEEeCCC-CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcC-----------ceEEE
Q psy208 276 ILQLSEVNFEYVPG-KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR-----------NLKFG 343 (443)
Q Consensus 276 ~l~~~~l~~~y~~~-~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~ig 343 (443)
-|+++|++.+|.++ .++|+|+||+|++||+|||||+.|||||||+.+|-.+..|.+|+|.+++ +.+++
T Consensus 1138 ~I~f~~~~~RYrp~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrls 1217 (1381)
T KOG0054|consen 1138 EIEFEDLSLRYRPNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLS 1217 (1381)
T ss_pred eEEEEEeEEEeCCCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcCe
Confidence 59999999999755 5799999999999999999999999999999999999999999999874 34789
Q ss_pred EeccCcccccccchhHHHHHHHhCCCCCHHHHHHHHhcCCCChhh------hh----ccCCCCCHHHHHHHHHHHHhccC
Q psy208 344 YFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDL------AL----QFVGSLSGGQKSRVAFARMCMAA 413 (443)
Q Consensus 344 ~~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~------~~----~~~~~LSgGekqRl~lA~al~~~ 413 (443)
.+||+|.. + ..|+..++- -+...+++++-+.|+..++.... ++ .-..++|-||||-++|||||+++
T Consensus 1218 IIPQdPvL-F--sGTvR~NLD-Pf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~ 1293 (1381)
T KOG0054|consen 1218 IIPQDPVL-F--SGTVRFNLD-PFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRK 1293 (1381)
T ss_pred eeCCCCce-e--cCccccccC-cccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhcc
Confidence 99999852 2 223333331 12234566777777666653211 12 23468999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHcc
Q psy208 414 PNFLVLDEPTNHLDIETIEALGKAINK 440 (443)
Q Consensus 414 p~lLiLDEPTn~LD~~s~~~l~~~L~~ 440 (443)
++||||||+|+++|+++-..+.+.|++
T Consensus 1294 skILvLDEATAsVD~~TD~lIQ~tIR~ 1320 (1381)
T KOG0054|consen 1294 SKILVLDEATASVDPETDALIQKTIRE 1320 (1381)
T ss_pred CCEEEEecccccCChHHHHHHHHHHHH
Confidence 999999999999999999998888865
No 333
>PLN03232 ABC transporter C family member; Provisional
Probab=99.96 E-value=1.1e-28 Score=288.96 Aligned_cols=162 Identities=21% Similarity=0.349 Sum_probs=135.6
Q ss_pred eEEEeeeEEEeCCC-CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcC-----------ceEEE
Q psy208 276 ILQLSEVNFEYVPG-KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR-----------NLKFG 343 (443)
Q Consensus 276 ~l~~~~l~~~y~~~-~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~ig 343 (443)
.|+++||+|+|+++ +++|+|+||+|++|+++||+|++|||||||+++|.|+++|++|+|.+++ +.+++
T Consensus 1234 ~I~f~nVsf~Y~~~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~ 1313 (1495)
T PLN03232 1234 SIKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLS 1313 (1495)
T ss_pred cEEEEEEEEEECCCCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcE
Confidence 59999999999644 5799999999999999999999999999999999999999999999875 23699
Q ss_pred EeccCcccccccchhHHHHHHHhCCCCCHHHHHHHHhcCCCChhh----------hhccCCCCCHHHHHHHHHHHHhccC
Q psy208 344 YFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDL----------ALQFVGSLSGGQKSRVAFARMCMAA 413 (443)
Q Consensus 344 ~~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~----------~~~~~~~LSgGekqRl~lA~al~~~ 413 (443)
|+||++. +. ..|+.+++.. ....+++++.+.++..++.... ......+||||||||++|||||+++
T Consensus 1314 iVpQdp~--LF-~gTIr~NL~~-~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~ 1389 (1495)
T PLN03232 1314 IIPQSPV--LF-SGTVRFNIDP-FSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRR 1389 (1495)
T ss_pred EECCCCe--ee-CccHHHHcCC-CCCCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhC
Confidence 9999974 22 3477777743 2245677888888877764211 1223458999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 414 PNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 414 p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
|+||||||||++||.++.+.+.+.|++.
T Consensus 1390 ~~ILILDEATSaLD~~Te~~Iq~~L~~~ 1417 (1495)
T PLN03232 1390 SKILVLDEATASVDVRTDSLIQRTIREE 1417 (1495)
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999998764
No 334
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.96 E-value=7.1e-29 Score=269.92 Aligned_cols=164 Identities=29% Similarity=0.430 Sum_probs=136.6
Q ss_pred CeEEEeeeEEEeCCC---CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcC-------------
Q psy208 275 PILQLSEVNFEYVPG---KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR------------- 338 (443)
Q Consensus 275 ~~l~~~~l~~~y~~~---~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~------------- 338 (443)
++|+++|+++.|+++ +++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|++.+++
T Consensus 3 ~~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~ 82 (648)
T PRK10535 3 ALLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQ 82 (648)
T ss_pred cEEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHH
Confidence 479999999999532 4699999999999999999999999999999999999999999998753
Q ss_pred --ceEEEEeccCcccccccchhHHHHHHH--hCCCC----CHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHh
Q psy208 339 --NLKFGYFSQHHVDQLDMNLRCVQLLEA--AFPGK----PQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMC 410 (443)
Q Consensus 339 --~~~ig~~~Q~~~~~l~~~~~~~~~~~~--~~~~~----~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al 410 (443)
+..++|++|++. +.+..+..+++.. ..... ..+.+.+++..+|+. +..++++..||+||+||++|||+|
T Consensus 83 ~~~~~i~~v~q~~~--l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~-~~~~~~~~~LS~Gq~qrv~LAraL 159 (648)
T PRK10535 83 LRREHFGFIFQRYH--LLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLE-DRVEYQPSQLSGGQQQRVSIARAL 159 (648)
T ss_pred HHhccEEEEeCCcc--cCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCh-hhhcCCcccCCHHHHHHHHHHHHH
Confidence 125899999863 3444455555432 11111 133567788899986 567899999999999999999999
Q ss_pred ccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 411 MAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 411 ~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
+.+|++|||||||++||+.+++.+.+.|+++
T Consensus 160 ~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l 190 (648)
T PRK10535 160 MNGGQVILADEPTGALDSHSGEEVMAILHQL 190 (648)
T ss_pred hcCCCEEEEECCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999875
No 335
>PLN03130 ABC transporter C family member; Provisional
Probab=99.96 E-value=1.5e-28 Score=288.57 Aligned_cols=162 Identities=22% Similarity=0.317 Sum_probs=135.5
Q ss_pred eEEEeeeEEEeCCC-CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcC-----------ceEEE
Q psy208 276 ILQLSEVNFEYVPG-KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR-----------NLKFG 343 (443)
Q Consensus 276 ~l~~~~l~~~y~~~-~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~ig 343 (443)
.|+++||+|+|+++ +++|+|+||+|++|+++||+|++|||||||+++|.|+++|++|+|.+++ +.+++
T Consensus 1237 ~I~f~nVsf~Y~~~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~Is 1316 (1622)
T PLN03130 1237 SIKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLG 1316 (1622)
T ss_pred cEEEEEEEEEeCCCCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccE
Confidence 59999999999644 4799999999999999999999999999999999999999999999875 24699
Q ss_pred EeccCcccccccchhHHHHHHHhCCCCCHHHHHHHHhcCCCChh----------hhhccCCCCCHHHHHHHHHHHHhccC
Q psy208 344 YFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGD----------LALQFVGSLSGGQKSRVAFARMCMAA 413 (443)
Q Consensus 344 ~~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~----------~~~~~~~~LSgGekqRl~lA~al~~~ 413 (443)
|+||++. +. ..|+.+++... ...+++++.+.++..++... .......+||||||||++|||||+++
T Consensus 1317 iVpQdp~--LF-~GTIreNLd~~-~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~ 1392 (1622)
T PLN03130 1317 IIPQAPV--LF-SGTVRFNLDPF-NEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRR 1392 (1622)
T ss_pred EECCCCc--cc-cccHHHHhCcC-CCCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcC
Confidence 9999974 22 34777777432 24467788888887766321 11123458999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 414 PNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 414 p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
|+||||||||++||.++.+.+.+.|++.
T Consensus 1393 p~ILILDEATSaLD~~Te~~Iq~~I~~~ 1420 (1622)
T PLN03130 1393 SKILVLDEATAAVDVRTDALIQKTIREE 1420 (1622)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999764
No 336
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.96 E-value=2.3e-29 Score=220.78 Aligned_cols=163 Identities=29% Similarity=0.381 Sum_probs=139.4
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc----------------
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN---------------- 339 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~---------------- 339 (443)
.|.++|+++.|+ ...+|-||+|+-..||.+.++||+|+|||||+|.|.=+..|.+|+..+..+
T Consensus 2 sirv~~in~~yg-~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~l 80 (242)
T COG4161 2 SIQLNGINCFYG-AHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDL 80 (242)
T ss_pred ceEEcccccccc-cchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHHH
Confidence 378999999996 567999999999999999999999999999999999999999999876431
Q ss_pred -eEEEEeccCcccccccchhHHHHHHHhC---CCCC----HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhc
Q psy208 340 -LKFGYFSQHHVDQLDMNLRCVQLLEAAF---PGKP----QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCM 411 (443)
Q Consensus 340 -~~ig~~~Q~~~~~l~~~~~~~~~~~~~~---~~~~----~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~ 411 (443)
.++|+++|.. .+.+..++.+++.... .+.+ ..++.++|.++.+. +..++.|-.|||||+|||+|||||+
T Consensus 81 r~~vgmvfqqy--~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~-~~adr~plhlsggqqqrvaiaralm 157 (242)
T COG4161 81 RRNVGMVFQQY--NLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLK-PYADRYPLHLSGGQQQRVAIARALM 157 (242)
T ss_pred HHhhhhhhhhh--ccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccc-cccccCceecccchhhhHHHHHHHh
Confidence 3589999974 4677888888875321 1222 34567889998886 6889999999999999999999999
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHcccc
Q psy208 412 AAPNFLVLDEPTNHLDIETIEALGKAINKYT 442 (443)
Q Consensus 412 ~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~~ 442 (443)
.+|++|++||||+.|||+-...+.++|++..
T Consensus 158 mkpqvllfdeptaaldpeitaqvv~iikel~ 188 (242)
T COG4161 158 MEPQVLLFDEPTAALDPEITAQIVSIIKELA 188 (242)
T ss_pred cCCcEEeecCcccccCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999988753
No 337
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.96 E-value=2.6e-29 Score=222.93 Aligned_cols=166 Identities=30% Similarity=0.404 Sum_probs=140.6
Q ss_pred CCeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcC---------------
Q psy208 274 PPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR--------------- 338 (443)
Q Consensus 274 ~~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~--------------- 338 (443)
+|+++++++++.|++ ..-.+||||++.|||+.+|+|.+||||||||++|++-+.|+.|+|.+..
T Consensus 4 ~PLL~V~~lsk~Yg~-~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEae 82 (258)
T COG4107 4 KPLLSVSGLSKLYGP-GKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAE 82 (258)
T ss_pred CcceeehhhhhhhCC-CcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHH
Confidence 578999999999964 5689999999999999999999999999999999999999999998742
Q ss_pred -----ceEEEEeccCcccccccchhHHHH----HHH---hCCCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHH
Q psy208 339 -----NLKFGYFSQHHVDQLDMNLRCVQL----LEA---AFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAF 406 (443)
Q Consensus 339 -----~~~ig~~~Q~~~~~l~~~~~~~~~----~~~---~~~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~l 406 (443)
+...|++.|+|.+.+.+..+.-.+ +.. ...+...+.+..+|.++.+..+..+..|..+|||++||+.|
T Consensus 83 RR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~PrtFSGGMqQRLQi 162 (258)
T COG4107 83 RRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQI 162 (258)
T ss_pred HHHHhhhccceeecCccccceeeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcccccchHHHHHHHH
Confidence 124799999998777665543322 221 11223456677899999998888888999999999999999
Q ss_pred HHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHcc
Q psy208 407 ARMCMAAPNFLVLDEPTNHLDIETIEALGKAINK 440 (443)
Q Consensus 407 A~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~ 440 (443)
||-|+..|.++++||||.|||...+..|.+.++.
T Consensus 163 ARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrg 196 (258)
T COG4107 163 ARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRG 196 (258)
T ss_pred HHHhccCCceEEecCCCCCcchhhHHHHHHHHHH
Confidence 9999999999999999999999999999998865
No 338
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.96 E-value=7.6e-29 Score=234.27 Aligned_cols=145 Identities=17% Similarity=0.149 Sum_probs=110.4
Q ss_pred ceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEE-EcCceEEEEeccCcccccccchhHHHHHHH--hC
Q psy208 291 PILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRT-VHRNLKFGYFSQHHVDQLDMNLRCVQLLEA--AF 367 (443)
Q Consensus 291 ~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~-~~~~~~ig~~~Q~~~~~l~~~~~~~~~~~~--~~ 367 (443)
.+|+|+||+|++|++++|+||||||||||+|+|+|+++|++|+|. +.... + .+.+.+ .+.+..++.+++.. ..
T Consensus 1 ~vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~-~-~~~~~~--~l~~~ltv~enl~~~~~~ 76 (213)
T PRK15177 1 VVLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDA-L-PLGANS--FILPGLTGEENARMMASL 76 (213)
T ss_pred CeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCce-e-cccccc--ccCCcCcHHHHHHHHHHH
Confidence 379999999999999999999999999999999999999999986 44321 1 122221 23444566665532 11
Q ss_pred CCCCHHHHH-HHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHcc
Q psy208 368 PGKPQEEYR-RQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINK 440 (443)
Q Consensus 368 ~~~~~~~~~-~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~ 440 (443)
......+.. .+...+++. ...+++++.||+|||||++||++++.+|+++||||||+++|+.++..+.+.|.+
T Consensus 77 ~~~~~~~~~~~~~~~~~l~-~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~~ 149 (213)
T PRK15177 77 YGLDGDEFSHFCYQLTQLE-QCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAALAC 149 (213)
T ss_pred cCCCHHHHHHHHHHHhChh-HHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHH
Confidence 122233322 233456665 456789999999999999999999999999999999999999999999887743
No 339
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.96 E-value=6.4e-28 Score=267.90 Aligned_cols=272 Identities=22% Similarity=0.275 Sum_probs=174.2
Q ss_pred CHHHHHHHHHHhCCCChhhhhccCCCCChHHHH----------------------------HHHHHHHHHh---hhCCCe
Q psy208 114 KAPARASVILAGLGFTPEMQKRATKHFSGGWRK----------------------------MAIIWLENYL---QNWPTT 162 (443)
Q Consensus 114 ~~~~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~----------------------------~~i~wL~~~L---~~~~~t 162 (443)
++..|++ .|..+|+....+++++.+|||||+| ..+.+|.+.| ++.+.|
T Consensus 465 ~i~~rl~-~L~~vGL~~l~l~r~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~T 543 (943)
T PRK00349 465 EIRERLK-FLVDVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNT 543 (943)
T ss_pred HHHHHHH-HhhccccCCCCCCCchhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCE
Confidence 3456675 7889999754468999999999999 4666777666 455789
Q ss_pred EEEEecCHHHHhccCCcEEEE------eCCeeEEEcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy208 163 LLVVSHDRHFLDSVPTDIFHL------HSQRIDTYRGNYEAFDKIKTEKLKNQQREIEAQRMHREHVQKFIDTFRYNANR 236 (443)
Q Consensus 163 viiVSHDr~fLd~v~~~i~~l------~~g~i~~~~G~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 236 (443)
||+||||.+++. .||+|++| ++|++ ++.|+++++....+. ... .++..
T Consensus 544 VIvVeH~~~~i~-~aD~vi~LgpgaG~~~G~i-v~~g~~~e~~~~~~~--------l~~---------~~l~~------- 597 (943)
T PRK00349 544 LIVVEHDEDTIR-AADYIVDIGPGAGVHGGEV-VASGTPEEIMKNPNS--------LTG---------QYLSG------- 597 (943)
T ss_pred EEEEeCCHHHHH-hCCEEEEeccccCCCCCEE-eeccCHHHHhcChhh--------eee---------hhhcc-------
Confidence 999999999987 59999999 78887 478888776321100 000 00000
Q ss_pred HHHHHHHHHHHhcCCCCCCCccccccccccCCCCCCCCCeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcH
Q psy208 237 ASSVQSKIKQLERLPELKPIEKEVEVVLKFPDTELLSPPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGK 316 (443)
Q Consensus 237 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGK 316 (443)
+. . .+.+. .. .....+.|+++|++. ..|+|+||+|+.|++++|+|+|||||
T Consensus 598 ------------~~-~-~~~~~-~~--------~~~~~~~L~v~~l~~------~~L~~isl~Ip~GeivgVtGvsGSGK 648 (943)
T PRK00349 598 ------------KK-K-IEVPK-ER--------RKGNGKFLKLKGARE------NNLKNVDVEIPLGKFTCVTGVSGSGK 648 (943)
T ss_pred ------------cc-c-ccccc-cc--------cCCCcceEEecCCcc------CCcCceEEEEeCCCEEEEEcCCCCCH
Confidence 00 0 00000 00 001224689999862 25999999999999999999999999
Q ss_pred HHHHHHHH---------cCCCCCC------c------eEEEcC------------------------------ceEEEEe
Q psy208 317 TTLLKIIM---------GIISPTA------G------TRTVHR------------------------------NLKFGYF 345 (443)
Q Consensus 317 STLlk~l~---------G~~~p~~------G------~i~~~~------------------------------~~~ig~~ 345 (443)
|||++.+. +...+.. | .|.+.. ....||.
T Consensus 649 STLl~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~vdQ~pig~~~RS~~~Ty~g~~d~iR~lfa~~~~a~~~g~~ 728 (943)
T PRK00349 649 STLINETLYKALARKLNGAKKVPGKHKEIEGLEHLDKVIDIDQSPIGRTPRSNPATYTGVFDPIRELFAGTPEAKARGYK 728 (943)
T ss_pred HHHHHHHHHHHHHHHhcccccCCCCCcccccccCCCceEEEecCCCCCCCCCCceeeccccHHHHHHhccCccccccCCC
Confidence 99998763 1111110 1 000100 0001111
Q ss_pred ccCcccc--------------------c--c------------------------------cchhHHHHHHHhCCCCCHH
Q psy208 346 SQHHVDQ--------------------L--D------------------------------MNLRCVQLLEAAFPGKPQE 373 (443)
Q Consensus 346 ~Q~~~~~--------------------l--~------------------------------~~~~~~~~~~~~~~~~~~~ 373 (443)
++....+ + + ...++.+.+..........
T Consensus 729 ~~~FS~N~~~G~C~~C~G~G~~~~~~~f~~~~~~~C~~C~G~R~~~e~l~v~~~g~~i~dvl~ltv~E~l~~f~~~~~i~ 808 (943)
T PRK00349 729 PGRFSFNVKGGRCEACQGDGVIKIEMHFLPDVYVPCDVCKGKRYNRETLEVKYKGKNIADVLDMTVEEALEFFEAIPKIA 808 (943)
T ss_pred cccCCCCCCCCCCCcccccceEEEEeccCCCccccCccccCccccccceEEEECCCCHHHHhcCcHHHHHHHHHhchhhh
Confidence 1110000 0 0 0012222221110001122
Q ss_pred HHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCC---CeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 374 EYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAP---NFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 374 ~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p---~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
...+.|..+|+.....++++.+|||||+||+.||++|+.+| +++||||||++||+..+..|.+.|.++
T Consensus 809 ~~l~~L~~vgL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l 879 (943)
T PRK00349 809 RKLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRL 879 (943)
T ss_pred HHHHHHHHCCCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHH
Confidence 34567888898644578899999999999999999999999 999999999999999999999998765
No 340
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.96 E-value=1.1e-28 Score=287.30 Aligned_cols=163 Identities=28% Similarity=0.353 Sum_probs=132.6
Q ss_pred eEEEeeeEEEeCCC--CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcC------------ceE
Q psy208 276 ILQLSEVNFEYVPG--KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR------------NLK 341 (443)
Q Consensus 276 ~l~~~~l~~~y~~~--~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~------------~~~ 341 (443)
.|+++||+|+|++. .++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.+++ +..
T Consensus 382 ~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~~~~lr~~ 461 (1466)
T PTZ00265 382 KIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSK 461 (1466)
T ss_pred cEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhCCHHHHHHh
Confidence 59999999999742 3699999999999999999999999999999999999999999999832 125
Q ss_pred EEEeccCcccccccchhHHHHHHHhCC-----------------------------------------------------
Q psy208 342 FGYFSQHHVDQLDMNLRCVQLLEAAFP----------------------------------------------------- 368 (443)
Q Consensus 342 ig~~~Q~~~~~l~~~~~~~~~~~~~~~----------------------------------------------------- 368 (443)
+||++|++. +.. .++.+++.....
T Consensus 462 Ig~V~Q~~~--LF~-~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 538 (1466)
T PTZ00265 462 IGVVSQDPL--LFS-NSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMR 538 (1466)
T ss_pred ccEeccccc--chh-ccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhcc
Confidence 899999863 222 467777653210
Q ss_pred ----CCCHHHHHHHHhcCCCChh----------hhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCCHHHHHHH
Q psy208 369 ----GKPQEEYRRQLGGFGVSGD----------LALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEAL 434 (443)
Q Consensus 369 ----~~~~~~~~~~L~~~gl~~~----------~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l 434 (443)
...++++.+.+..+++... .....+..||||||||++||||++.+|++|||||||++||+.+...+
T Consensus 539 ~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i 618 (1466)
T PTZ00265 539 KNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLV 618 (1466)
T ss_pred cccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHH
Confidence 1234556667777766421 12356789999999999999999999999999999999999999999
Q ss_pred HHHHccc
Q psy208 435 GKAINKY 441 (443)
Q Consensus 435 ~~~L~~~ 441 (443)
.++|.++
T Consensus 619 ~~~L~~~ 625 (1466)
T PTZ00265 619 QKTINNL 625 (1466)
T ss_pred HHHHHHH
Confidence 9999875
No 341
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.96 E-value=1.6e-29 Score=223.53 Aligned_cols=164 Identities=26% Similarity=0.374 Sum_probs=134.2
Q ss_pred eEEEeeeEEEeC----CC--CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcC-----------
Q psy208 276 ILQLSEVNFEYV----PG--KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR----------- 338 (443)
Q Consensus 276 ~l~~~~l~~~y~----~~--~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~----------- 338 (443)
.|.++|++|+|- ++ -++++++||+++.||++++=||+|||||||||+|.|.+.|++|+|.+..
T Consensus 4 ~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~ 83 (235)
T COG4778 4 PLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAE 83 (235)
T ss_pred eeeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccC
Confidence 588999999883 12 3799999999999999999999999999999999999999999998742
Q ss_pred --------ceEEEEeccCcccccccchhHHHHHHH-----hCC-CCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHH
Q psy208 339 --------NLKFGYFSQHHVDQLDMNLRCVQLLEA-----AFP-GKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRV 404 (443)
Q Consensus 339 --------~~~ig~~~Q~~~~~l~~~~~~~~~~~~-----~~~-~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl 404 (443)
+..+||++|... .-+....++..+. ..+ ......+..+|.++.++...+.-+|.++||||+|||
T Consensus 84 pr~vl~vRr~TiGyVSQFLR--viPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQRV 161 (235)
T COG4778 84 PREVLEVRRTTIGYVSQFLR--VIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRV 161 (235)
T ss_pred hHHHHHHHHhhhHHHHHHHH--hccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchheeh
Confidence 235889988532 2233333333321 111 112346778999999999999999999999999999
Q ss_pred HHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 405 AFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 405 ~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
.|||.++.+-+||+|||||+.||...+..+.+.|.+-
T Consensus 162 NIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~ 198 (235)
T COG4778 162 NIARGFIVDYPILLLDEPTASLDATNRAVVVELIREA 198 (235)
T ss_pred hhhhhhhccCceEEecCCcccccccchHHHHHHHHHH
Confidence 9999999999999999999999999999999998763
No 342
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.96 E-value=2.5e-27 Score=240.03 Aligned_cols=352 Identities=16% Similarity=0.218 Sum_probs=250.1
Q ss_pred hhhhhhhhcchHHHHHHHcccccc---------CC--------------CCCcceEEec------------CCceEEEEe
Q psy208 8 TVSNSIFCFSSEFYCKALTLHLHL---------EG--------------GMVSGQLRIP------------SHISVLHVE 52 (443)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~---------~~--------------~~~~G~i~~~------------~~~~i~~l~ 52 (443)
.+.+|+++|++-+-.+.+++.+.+ +| .||+|+|.+. ....||.+.
T Consensus 6 ~~~~itK~f~~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GIGMVh 85 (501)
T COG3845 6 EMRGITKRFPGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGIGMVH 85 (501)
T ss_pred EEeccEEEcCCEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcCCcEEe
Confidence 467888899887778888877776 22 2788999863 136799999
Q ss_pred cccCC-CCchHHHHHHhccHHHHHHHHHHHHHHHHHhCCCCChhhHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCCChh
Q psy208 53 QEVVG-DDTPAIDSVLECDTKRQNLLNREKTITQAINNGTADANMSTELTQVFAELEAIEADKAPARASVILAGLGFTPE 131 (443)
Q Consensus 53 Q~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~~~L~~lgl~~~ 131 (443)
|++.. +..|+.+-++-+.... ....++...+.+++.++...+||+-+
T Consensus 86 QHF~Lv~~lTV~ENiiLg~e~~--------------------------------~~~~~~~~~~~~~i~~l~~~yGl~vd 133 (501)
T COG3845 86 QHFMLVPTLTVAENIILGLEPS--------------------------------KGGLIDRRQARARIKELSERYGLPVD 133 (501)
T ss_pred eccccccccchhhhhhhcCccc--------------------------------cccccCHHHHHHHHHHHHHHhCCCCC
Confidence 99875 5567766554332100 00011122345688888999999853
Q ss_pred hhhccCCCCChHHHH--------------------------HHHHHHHHH---hhhCCCeEEEEecCHHHHhccCCcEEE
Q psy208 132 MQKRATKHFSGGWRK--------------------------MAIIWLENY---LQNWPTTLLVVSHDRHFLDSVPTDIFH 182 (443)
Q Consensus 132 ~~~~~~~~LSGGqr~--------------------------~~i~wL~~~---L~~~~~tviiVSHDr~fLd~v~~~i~~ 182 (443)
.++.+++||=|+|| ..++-|-+. |+.-++|||+|||....+-++|||+-+
T Consensus 134 -p~~~V~dLsVG~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTV 212 (501)
T COG3845 134 -PDAKVADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTV 212 (501)
T ss_pred -ccceeecCCcchhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCeeEE
Confidence 58999999999999 344444444 456789999999999999999999999
Q ss_pred EeCCeeEEEcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccccc
Q psy208 183 LHSQRIDTYRGNYEAFDKIKTEKLKNQQREIEAQRMHREHVQKFIDTFRYNANRASSVQSKIKQLERLPELKPIEKEVEV 262 (443)
Q Consensus 183 l~~g~i~~~~G~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 262 (443)
|..|+++ |.++.-.+ .-.+++.+++ +- ..+....
T Consensus 213 LR~Gkvv---gt~~~~~~--------------~t~~ela~lM--vG----------------------~~v~~~~----- 246 (501)
T COG3845 213 LRRGKVV---GTVDPVAE--------------TTEEELAELM--VG----------------------REVVLRV----- 246 (501)
T ss_pred EeCCeEE---eeecCCCC--------------CCHHHHHHHh--cC----------------------Ccccccc-----
Confidence 9999964 44442000 0000111111 00 0000000
Q ss_pred ccccCCCCCCCCCeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc---
Q psy208 263 VLKFPDTELLSPPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN--- 339 (443)
Q Consensus 263 ~~~~~~~~~~~~~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~--- 339 (443)
.. .+..++.++|+++||+..-..+.+.++++||+|..||++||.|-.|-|-+.|+.+|+|+.+|.+|+|.+.+.
T Consensus 247 --~~-~~~~pg~~vL~V~~L~v~~~~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~ 323 (501)
T COG3845 247 --VK-PPSTPGEVVLEVEDLSVKDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVL 323 (501)
T ss_pred --cc-CCCCCCCeEEEEeeeEeecCCCCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEecc
Confidence 00 112345789999999997543357899999999999999999999999999999999999999999988653
Q ss_pred ----------eEEEEeccCc-ccccccchhHHHHHHHh-CCC--------CC----HHHHHHHHhcCCCChhhhhccCCC
Q psy208 340 ----------LKFGYFSQHH-VDQLDMNLRCVQLLEAA-FPG--------KP----QEEYRRQLGGFGVSGDLALQFVGS 395 (443)
Q Consensus 340 ----------~~ig~~~Q~~-~~~l~~~~~~~~~~~~~-~~~--------~~----~~~~~~~L~~~gl~~~~~~~~~~~ 395 (443)
..++|+|.+. ...+-++.+..+++... +.. .. ...+.++++.|.+.......++.+
T Consensus 324 ~~~~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~ 403 (501)
T COG3845 324 GRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARS 403 (501)
T ss_pred ccCCHHHHHhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcchhh
Confidence 2478999874 23344555666554321 110 11 234567888898876666778999
Q ss_pred CCHHHHHHHHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 396 LSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 396 LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
||||.+||+.+||-+..+|++||+.+||.|||..+.+.+.+.|.+.
T Consensus 404 LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~ 449 (501)
T COG3845 404 LSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLEL 449 (501)
T ss_pred cCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999888653
No 343
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.96 E-value=2e-27 Score=274.17 Aligned_cols=267 Identities=22% Similarity=0.292 Sum_probs=167.8
Q ss_pred HHHHHHHHhCCCChhhhhccCCCCChHHHH----------------------------HHHHHHHHHhh---hCCCeEEE
Q psy208 117 ARASVILAGLGFTPEMQKRATKHFSGGWRK----------------------------MAIIWLENYLQ---NWPTTLLV 165 (443)
Q Consensus 117 ~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~----------------------------~~i~wL~~~L~---~~~~tvii 165 (443)
.|++.+ ..+|+....+++++.+|||||+| ..+.+|.+.|+ +.+.|||+
T Consensus 455 ~RL~~L-~~vGL~~L~ldR~~~tLSGGE~QRV~LAraL~~~p~g~lLILDEPTagLD~~~~~~L~~lL~~L~~~G~TVIv 533 (1809)
T PRK00635 455 SRLSIL-IDLGLPYLTPERALATLSGGEQERTALAKHLGAELIGITYILDEPSIGLHPQDTHKLINVIKKLRDQGNTVLL 533 (1809)
T ss_pred HHHHHH-HhccccCCCCCCchhhCCHHHHHHHHHHHHHhcCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 444433 46788754468999999999999 45666666664 45789999
Q ss_pred EecCHHHHhccCCcEEEEe------CCeeEEEcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy208 166 VSHDRHFLDSVPTDIFHLH------SQRIDTYRGNYEAFDKIKTEKLKNQQREIEAQRMHREHVQKFIDTFRYNANRASS 239 (443)
Q Consensus 166 VSHDr~fLd~v~~~i~~l~------~g~i~~~~G~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 239 (443)
||||.+++ ++||+|++|. +|++ ++.|.++.+....+. .. ..+..
T Consensus 534 VeHd~~vi-~~aDrVi~L~pGag~~gG~I-v~~G~~~eil~~~~~--------l~---------~~~l~----------- 583 (1809)
T PRK00635 534 VEHDEQMI-SLADRIIDIGPGAGIFGGEV-LFNGSPREFLAKSDS--------LT---------AKYLR----------- 583 (1809)
T ss_pred EeCcHHHH-HhCCEEEEEcCCcccCCCEE-EEecCHHHHhhChHH--------HH---------HHHhc-----------
Confidence 99999965 7999999997 4566 478887766321100 00 00000
Q ss_pred HHHHHHHHhcCCCCCCCccccccccccCCCCCCCCCeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHH
Q psy208 240 VQSKIKQLERLPELKPIEKEVEVVLKFPDTELLSPPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTL 319 (443)
Q Consensus 240 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTL 319 (443)
+..... .+.. .....+.|++++++. ..|+++||+|++|++++|+|+||||||||
T Consensus 584 ---------~~~~~~-~~~~----------~~~~~~~L~l~~~~~------~~Lk~isl~Ip~Geiv~VtG~nGSGKSTL 637 (1809)
T PRK00635 584 ---------QELTIP-IPEK----------RTNSLGTLTLSKATK------HNLKDLTISLPLGRLTVVTGVSGSGKSSL 637 (1809)
T ss_pred ---------Cccccc-Cccc----------ccCCCCeEEEecccc------CCccceEEEEcCCcEEEEEcCCCCCHHHH
Confidence 000000 0000 001123688998862 26999999999999999999999999999
Q ss_pred HH---------HHHcCCCCC------------------------CceEEEcC-------------------ceEEEEecc
Q psy208 320 LK---------IIMGIISPT------------------------AGTRTVHR-------------------NLKFGYFSQ 347 (443)
Q Consensus 320 lk---------~l~G~~~p~------------------------~G~i~~~~-------------------~~~ig~~~Q 347 (443)
++ .|.|...+. ++.+++.+ -....|.++
T Consensus 638 l~~~L~~~l~~~l~~~~~~~~~i~g~~i~~vi~idQspigr~~rS~~atY~g~fd~IR~lFA~~~~ak~~g~~~~~fsfn 717 (1809)
T PRK00635 638 INDTLVPAVEEFIEQGFCSNLSIQWGAISRLVHITRDLPGRSQRSIPLTYIKAFDDLRELFAEQPRSKRLGLTKSHFSFN 717 (1809)
T ss_pred HHHHHHHHHHHHhcCCCcccccccccccceeEEecCCCCCCCCCCCceeehhhhHHHHHHHhhChHHHHcCCCcceeeec
Confidence 99 556653221 11122100 000001111
Q ss_pred C------------------ccccc------------------ccchhHHHHHHH-------hCCCC--CHHHHHHHHhcC
Q psy208 348 H------------------HVDQL------------------DMNLRCVQLLEA-------AFPGK--PQEEYRRQLGGF 382 (443)
Q Consensus 348 ~------------------~~~~l------------------~~~~~~~~~~~~-------~~~~~--~~~~~~~~L~~~ 382 (443)
. +.... ....++.+.+.. .+... ....+ ..|..+
T Consensus 718 ~~gG~C~~c~g~g~i~v~m~~~~v~c~~C~GkRy~~e~L~~~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l-~~L~~v 796 (1809)
T PRK00635 718 TPLGACAECQGLGSITTTDNRTSIPCPSCLGKRFLPQVLEVRYKGKNIADILEMTAYEAEKFFLDEPSIHEKI-HALCSL 796 (1809)
T ss_pred CCCCCCCcceeeEEEEEecCCceEECCccCCcccCHHHHhhccCCCCHHHHHHcCHHHHHHcccChHHHHHHH-HHHHHc
Confidence 1 00000 001122222210 01100 11223 477888
Q ss_pred CCChhhhhccCCCCCHHHHHHHHHHHHhc---cCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 383 GVSGDLALQFVGSLSGGQKSRVAFARMCM---AAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 383 gl~~~~~~~~~~~LSgGekqRl~lA~al~---~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
|+..-..++++.+|||||+||++||++|+ .+|++|||||||++||+.+++.|.+.|.++
T Consensus 797 GL~~l~l~q~~~tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L 858 (1809)
T PRK00635 797 GLDYLPLGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSL 858 (1809)
T ss_pred CCcchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Confidence 98632368999999999999999999997 699999999999999999999999999765
No 344
>PRK13409 putative ATPase RIL; Provisional
Probab=99.96 E-value=1e-28 Score=265.06 Aligned_cols=157 Identities=24% Similarity=0.282 Sum_probs=125.7
Q ss_pred eeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEE-----------EcC----------
Q psy208 280 SEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRT-----------VHR---------- 338 (443)
Q Consensus 280 ~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~-----------~~~---------- 338 (443)
++++++|++...+|++++ .+++|+++||+||||||||||+|+|+|+++|++|+|. +.+
T Consensus 77 ~~~~~~yg~~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~ 155 (590)
T PRK13409 77 EEPVHRYGVNGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKL 155 (590)
T ss_pred cCceEEecCCceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHHH
Confidence 458999975456999999 9999999999999999999999999999999999986 321
Q ss_pred ---ceEEEEeccCcccccc-cchhHHHHHHHhCCCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCC
Q psy208 339 ---NLKFGYFSQHHVDQLD-MNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAP 414 (443)
Q Consensus 339 ---~~~ig~~~Q~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p 414 (443)
..++++.+|....... ...++.+++... .....+.+++..+++. ...++++.+|||||||||+||++|+.+|
T Consensus 156 ~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~---~~~~~~~~~l~~l~l~-~~~~~~~~~LSgGe~qrv~ia~al~~~p 231 (590)
T PRK13409 156 YNGEIKVVHKPQYVDLIPKVFKGKVRELLKKV---DERGKLDEVVERLGLE-NILDRDISELSGGELQRVAIAAALLRDA 231 (590)
T ss_pred hccCcceeecccchhhhhhhhcchHHHHHHhh---hHHHHHHHHHHHcCCc-hhhcCChhhCCHHHHHHHHHHHHHhcCC
Confidence 1235666664321110 112455555321 1234678889999996 5678999999999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 415 NFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 415 ~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
++|||||||++||+.++..+.+.|+++
T Consensus 232 ~lllLDEPts~LD~~~~~~l~~~i~~l 258 (590)
T PRK13409 232 DFYFFDEPTSYLDIRQRLNVARLIREL 258 (590)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999876
No 345
>PLN03211 ABC transporter G-25; Provisional
Probab=99.96 E-value=2e-28 Score=265.89 Aligned_cols=160 Identities=25% Similarity=0.401 Sum_probs=130.1
Q ss_pred EEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCC--CceEEEcCc-------eEEEEeccC
Q psy208 278 QLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPT--AGTRTVHRN-------LKFGYFSQH 348 (443)
Q Consensus 278 ~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~--~G~i~~~~~-------~~ig~~~Q~ 348 (443)
..+|++++|+ ++.+|+|+|+++++|+++||+|||||||||||++|+|..+|+ +|+|.+++. ..+||++|+
T Consensus 70 ~~~~l~~~~~-~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~~~~~~i~yv~Q~ 148 (659)
T PLN03211 70 KISDETRQIQ-ERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRTGFVTQD 148 (659)
T ss_pred ccccccccCC-CCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECchhhccceEEECcc
Confidence 4667888885 578999999999999999999999999999999999999885 899988652 358999998
Q ss_pred cccccccchhHHHHHHHh--C--C-CCCH----HHHHHHHhcCCCChhhh-----hccCCCCCHHHHHHHHHHHHhccCC
Q psy208 349 HVDQLDMNLRCVQLLEAA--F--P-GKPQ----EEYRRQLGGFGVSGDLA-----LQFVGSLSGGQKSRVAFARMCMAAP 414 (443)
Q Consensus 349 ~~~~l~~~~~~~~~~~~~--~--~-~~~~----~~~~~~L~~~gl~~~~~-----~~~~~~LSgGekqRl~lA~al~~~p 414 (443)
.. +....++.+++... . + .... +.+.+++..+|+.. .. ++.+..|||||||||+||++|+.+|
T Consensus 149 ~~--l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P 225 (659)
T PLN03211 149 DI--LYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTK-CENTIIGNSFIRGISGGERKRVSIAHEMLINP 225 (659)
T ss_pred cc--cCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChh-hcCceeCCCCCCCcChhhhhHHHHHHHHHhCC
Confidence 53 44455666665321 1 1 1122 33667888999853 22 3457789999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 415 NFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 415 ~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
++|||||||+|||+.++..+.+.|+++
T Consensus 226 ~iLlLDEPtsgLD~~~~~~l~~~L~~l 252 (659)
T PLN03211 226 SLLILDEPTSGLDATAAYRLVLTLGSL 252 (659)
T ss_pred CEEEEeCCCCCcCHHHHHHHHHHHHHH
Confidence 999999999999999999999999865
No 346
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.95 E-value=3.8e-27 Score=261.27 Aligned_cols=269 Identities=21% Similarity=0.275 Sum_probs=166.9
Q ss_pred HHHHHHHHHhCCCChhhhhccCCCCChHHHH----------------------------HHHHHHHHHhh---hCCCeEE
Q psy208 116 PARASVILAGLGFTPEMQKRATKHFSGGWRK----------------------------MAIIWLENYLQ---NWPTTLL 164 (443)
Q Consensus 116 ~~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~----------------------------~~i~wL~~~L~---~~~~tvi 164 (443)
..|++. |..+|+....+++++.+|||||+| ..+.+|.+.|+ +.+.|||
T Consensus 465 ~~rl~~-L~~vgL~~l~l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVI 543 (924)
T TIGR00630 465 KERLGF-LIDVGLDYLTLSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVI 543 (924)
T ss_pred HHHHHh-HhhccccccccCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEE
Confidence 344433 677888754468999999999999 45666666663 4577999
Q ss_pred EEecCHHHHhccCCcEEEE------eCCeeEEEcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy208 165 VVSHDRHFLDSVPTDIFHL------HSQRIDTYRGNYEAFDKIKTEKLKNQQREIEAQRMHREHVQKFIDTFRYNANRAS 238 (443)
Q Consensus 165 iVSHDr~fLd~v~~~i~~l------~~g~i~~~~G~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 238 (443)
+||||.+++. .||+|++| ++|++. +.|+++.+....+ .... .++..
T Consensus 544 vVeHd~~~i~-~aD~vi~LgpgaG~~~G~Iv-~~g~~~el~~~~~--------~lt~---------~~l~~--------- 595 (924)
T TIGR00630 544 VVEHDEETIR-AADYVIDIGPGAGIHGGEVV-ASGTPEEILANPD--------SLTG---------QYLSG--------- 595 (924)
T ss_pred EEECCHHHHh-hCCEEEEecccccCCCCEEe-eccCHHHHhcCch--------heee---------ecccc---------
Confidence 9999999997 89999999 788874 6787665422100 0000 00000
Q ss_pred HHHHHHHHHhcCCCCCCCccccccccccCCCCCCCCCeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHH
Q psy208 239 SVQSKIKQLERLPELKPIEKEVEVVLKFPDTELLSPPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTT 318 (443)
Q Consensus 239 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKST 318 (443)
+ ... +.+. . ......++|+++|++. ..|+|+||+|+.|++++|+|+|||||||
T Consensus 596 ----------~-~~~-~~~~-~--------~~~~~~~~l~l~~~~~------~~Lk~vsl~Ip~Geiv~VtGvsGSGKST 648 (924)
T TIGR00630 596 ----------K-KKI-EVPK-E--------RRPGNGKFLTLKGARE------NNLKNITVSIPLGLFTCITGVSGSGKST 648 (924)
T ss_pred ----------c-ccc-cccc-c--------ccCCCcceEEEEeCcc------CCcCceEEEEeCCCEEEEECCCCCCHHH
Confidence 0 000 0000 0 0001224789999873 2599999999999999999999999999
Q ss_pred HHH-HHH--------c-CCCCC-CceEEE-cCceEEEEeccCccc-----------------------------------
Q psy208 319 LLK-IIM--------G-IISPT-AGTRTV-HRNLKFGYFSQHHVD----------------------------------- 351 (443)
Q Consensus 319 Llk-~l~--------G-~~~p~-~G~i~~-~~~~~ig~~~Q~~~~----------------------------------- 351 (443)
|++ +|. + ..+|. ...+.- ..-..+-++.|.+..
T Consensus 649 Ll~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vdQ~pi~~~~RS~~aTy~~~~d~iR~lfa~~~~a~~~g~~~~ 728 (924)
T TIGR00630 649 LINDTLYPALARRLNGAKTQPGRYKSIEGLEHLDKVIHIDQSPIGRTPRSNPATYTGVFDEIRELFAETPEAKARGYTPG 728 (924)
T ss_pred HHHHHHHHHHHHHhcccccCCCCcCccccccCCCceEEEecCCCCCCCCCchhhhhhhHHHHHHHHhcCCccccCCCChh
Confidence 998 331 1 11111 000000 000001111111100
Q ss_pred ----------------------------------------cccc----------------chhHHHHHHHhCCC-CCHHH
Q psy208 352 ----------------------------------------QLDM----------------NLRCVQLLEAAFPG-KPQEE 374 (443)
Q Consensus 352 ----------------------------------------~l~~----------------~~~~~~~~~~~~~~-~~~~~ 374 (443)
.+.. ..++.+.+. .+.. .....
T Consensus 729 ~FSfN~~~G~C~~C~G~G~~~~~~~f~~~~~~~C~~C~G~R~~~e~l~v~~~g~~i~dvl~~tv~e~~~-f~~~~~~i~~ 807 (924)
T TIGR00630 729 RFSFNVKGGRCEACQGDGVIKIEMHFLPDVYVPCEVCKGKRYNRETLEVKYKGKNIADVLDMTVEEAYE-FFEAVPSISR 807 (924)
T ss_pred hcCCCCCCCCCCCCccceEEEEEccCCCCcccCCCCcCCceeChHHHhceeCCCCHHHHhCCcHHHHHH-HHHhccchhH
Confidence 0000 001111110 0100 01123
Q ss_pred HHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhcc---CCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 375 YRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMA---APNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 375 ~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~---~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
...+|..+|+.....++++.+|||||+||+.||++|+. +|+++||||||++||+.++..|.+.|.++
T Consensus 808 ~l~~L~~~gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l 877 (924)
T TIGR00630 808 KLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRL 877 (924)
T ss_pred HHHHHHHcCCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHH
Confidence 45677888986445788999999999999999999997 59999999999999999999999999765
No 347
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.95 E-value=7.3e-29 Score=217.28 Aligned_cols=123 Identities=37% Similarity=0.566 Sum_probs=100.5
Q ss_pred eeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcC-----------ceEEEEeccCcccccccchhHHH
Q psy208 293 LTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR-----------NLKFGYFSQHHVDQLDMNLRCVQ 361 (443)
Q Consensus 293 l~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~ig~~~Q~~~~~l~~~~~~~~ 361 (443)
|+|+||+|.+|++++|+|+||||||||+++|+|.++|++|.|.+.. ...++|++|++ .+....++.+
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~tv~~ 78 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDP--QLFPGLTVRE 78 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSH--CHHTTSBHHH
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeeccccccccccccccccccccccccccccccccccccc--cccccccccc
Confidence 6899999999999999999999999999999999999999998763 23589999984 3444445554
Q ss_pred HHHHhCCCCCHHHHHHHHhcCCCCh---hhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCC
Q psy208 362 LLEAAFPGKPQEEYRRQLGGFGVSG---DLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTN 424 (443)
Q Consensus 362 ~~~~~~~~~~~~~~~~~L~~~gl~~---~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn 424 (443)
+ ....++..++..+++.. ...++++..||+||||||+||++++.+|++||||||||
T Consensus 79 ~-------~~~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 79 N-------ESDERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp H-------HHHHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred c-------cccccccccccccccccccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 4 12345677777777642 23344459999999999999999999999999999997
No 348
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.95 E-value=6.3e-29 Score=234.69 Aligned_cols=150 Identities=25% Similarity=0.369 Sum_probs=111.9
Q ss_pred ceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCce----------EEEEeccC-ccccccc----
Q psy208 291 PILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNL----------KFGYFSQH-HVDQLDM---- 355 (443)
Q Consensus 291 ~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~----------~ig~~~Q~-~~~~l~~---- 355 (443)
++.+|+||+|++|++++++|||||||||+||+|+|++.|++|.|.+.+.. .+++++-. ....++.
T Consensus 38 ~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~~d 117 (325)
T COG4586 38 EAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPALD 117 (325)
T ss_pred hhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeechhhh
Confidence 48899999999999999999999999999999999999999999886421 13332211 1001111
Q ss_pred chhHHHHHHHhCCC-CCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCCHHHHHHH
Q psy208 356 NLRCVQLLEAAFPG-KPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEAL 434 (443)
Q Consensus 356 ~~~~~~~~~~~~~~-~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l 434 (443)
+..+...+.. .++ .-.++...+.+.+++. ...+.++..||-|||.|+.||.+|+++|+||+|||||-|||..++..+
T Consensus 118 s~~v~~~Iy~-Ipd~~F~~r~~~l~eiLdl~-~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~i 195 (325)
T COG4586 118 SLEVLKLIYE-IPDDEFAERLDFLTEILDLE-GFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANI 195 (325)
T ss_pred hHHHHHHHHh-CCHHHHHHHHHHHHHHhcch-hhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHH
Confidence 1111122211 111 1123344455566765 467899999999999999999999999999999999999999999999
Q ss_pred HHHHcccc
Q psy208 435 GKAINKYT 442 (443)
Q Consensus 435 ~~~L~~~~ 442 (443)
.++|++|.
T Consensus 196 r~Flke~n 203 (325)
T COG4586 196 REFLKEYN 203 (325)
T ss_pred HHHHHHHH
Confidence 99999885
No 349
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.95 E-value=8.3e-29 Score=221.33 Aligned_cols=167 Identities=25% Similarity=0.349 Sum_probs=140.9
Q ss_pred CeEEEeeeEEEeCCC--------CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-------
Q psy208 275 PILQLSEVNFEYVPG--------KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN------- 339 (443)
Q Consensus 275 ~~l~~~~l~~~y~~~--------~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------- 339 (443)
++|+++|++++|... ..+++.|||+++.|+.+||||.||||||||.|+|+|.++|++|+|.+++.
T Consensus 3 ~LLeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy 82 (267)
T COG4167 3 TLLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDY 82 (267)
T ss_pred chhhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccch
Confidence 468999999988521 24789999999999999999999999999999999999999999988642
Q ss_pred ----eEEEEeccCcccccccchhHHHHHHH---hCCCC----CHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHH
Q psy208 340 ----LKFGYFSQHHVDQLDMNLRCVQLLEA---AFPGK----PQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFAR 408 (443)
Q Consensus 340 ----~~ig~~~Q~~~~~l~~~~~~~~~~~~---~~~~~----~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~ 408 (443)
..|-+++|+|...+++...+-..+.. ..... ..+.+.+-|..+|+.++..+-++..||.||||||+|||
T Consensus 83 ~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRVaLAR 162 (267)
T COG4167 83 SFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALAR 162 (267)
T ss_pred HhhhhheeeeecCCccccChhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHHHHHH
Confidence 35788999998888877765544422 11122 23457778999999999999999999999999999999
Q ss_pred HhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 409 MCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 409 al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
||+.+|.++|.||..++||...+.+|.+...+.
T Consensus 163 ALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeL 195 (267)
T COG4167 163 ALILRPKIIIADEALASLDMSMRSQLINLMLEL 195 (267)
T ss_pred HHhcCCcEEEehhhhhhccHHHHHHHHHHHHHH
Confidence 999999999999999999999999999887654
No 350
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.95 E-value=1.5e-28 Score=236.25 Aligned_cols=163 Identities=22% Similarity=0.298 Sum_probs=136.4
Q ss_pred eEEEeeeEEEeCCC-----------------------CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCc
Q psy208 276 ILQLSEVNFEYVPG-----------------------KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAG 332 (443)
Q Consensus 276 ~l~~~~l~~~y~~~-----------------------~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G 332 (443)
.|+++||++-|+.. ..-+.|+||+|+.||+.+|.|-+|||||||+|+|.++++|++|
T Consensus 4 ~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G 83 (386)
T COG4175 4 KIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRG 83 (386)
T ss_pred eEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCc
Confidence 47888888888621 1247899999999999999999999999999999999999999
Q ss_pred eEEEcC---------------ceEEEEeccCcccccccchhHHHHHHHhC--CCC----CHHHHHHHHhcCCCChhhhhc
Q psy208 333 TRTVHR---------------NLKFGYFSQHHVDQLDMNLRCVQLLEAAF--PGK----PQEEYRRQLGGFGVSGDLALQ 391 (443)
Q Consensus 333 ~i~~~~---------------~~~ig~~~Q~~~~~l~~~~~~~~~~~~~~--~~~----~~~~~~~~L~~~gl~~~~~~~ 391 (443)
+|.+++ +.+++++||+. .+.+..++.++..... .+. .++.+.+.|+.+|+. ...++
T Consensus 84 ~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~F--aLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~-~~~~~ 160 (386)
T COG4175 84 EILVDGKDIAKLSAAELRELRRKKISMVFQSF--ALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLE-GYADK 160 (386)
T ss_pred eEEECCcchhcCCHHHHHHHHhhhhhhhhhhh--ccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCch-hhhhc
Confidence 998864 24689999975 4667788888765321 122 245678889999997 57889
Q ss_pred cCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 392 FVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 392 ~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
+|.+|||||||||.|||||+.+|+|||+|||+++|||--+..+.+.|.++
T Consensus 161 yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~L 210 (386)
T COG4175 161 YPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLEL 210 (386)
T ss_pred CcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999888888877654
No 351
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.95 E-value=8.3e-28 Score=243.33 Aligned_cols=164 Identities=27% Similarity=0.366 Sum_probs=129.2
Q ss_pred CeEEEeeeEEEeCCC-CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcC-----------ceEE
Q psy208 275 PILQLSEVNFEYVPG-KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR-----------NLKF 342 (443)
Q Consensus 275 ~~l~~~~l~~~y~~~-~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~i 342 (443)
-.|.++++++.=++. +++++++||++.+|+.+|||||+|||||||.|+|.|..+|.+|.|++++ ...|
T Consensus 333 g~L~Ve~l~~~PPg~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hi 412 (580)
T COG4618 333 GALSVERLTAAPPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHI 412 (580)
T ss_pred ceeeEeeeeecCCCCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhcccc
Confidence 369999999865443 5899999999999999999999999999999999999999999998864 2469
Q ss_pred EEeccCcccccccchhHHHHHHHhCCCCCHHHHHHHHhcCCCC------hhhhhcc----CCCCCHHHHHHHHHHHHhcc
Q psy208 343 GYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVS------GDLALQF----VGSLSGGQKSRVAFARMCMA 412 (443)
Q Consensus 343 g~~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~------~~~~~~~----~~~LSgGekqRl~lA~al~~ 412 (443)
||+||+- +.+ ..|+-+++...-.+.+.+.+.+....-|.. ++-.+.. ...||||||||++|||||..
T Consensus 413 GYLPQdV-eLF--~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG 489 (580)
T COG4618 413 GYLPQDV-ELF--DGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYG 489 (580)
T ss_pred CcCcccc-eec--CCcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcC
Confidence 9999985 222 457788887654444444333322222211 0111233 35799999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 413 APNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 413 ~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
+|.+++||||-++||.+...+|.++|...
T Consensus 490 ~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~ 518 (580)
T COG4618 490 DPFLVVLDEPNSNLDSEGEAALAAAILAA 518 (580)
T ss_pred CCcEEEecCCCCCcchhHHHHHHHHHHHH
Confidence 99999999999999999999999998753
No 352
>KOG0055|consensus
Probab=99.95 E-value=7.3e-28 Score=266.11 Aligned_cols=163 Identities=26% Similarity=0.364 Sum_probs=133.7
Q ss_pred eEEEeeeEEEeCCC--CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcC-----------ceEE
Q psy208 276 ILQLSEVNFEYVPG--KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR-----------NLKF 342 (443)
Q Consensus 276 ~l~~~~l~~~y~~~--~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~i 342 (443)
-|+++||+|+||.. .++|+|+||+|++|+.+|||||+||||||.+-+|-.++.|++|.|.+++ +.++
T Consensus 987 ~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i 1066 (1228)
T KOG0055|consen 987 DIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQI 1066 (1228)
T ss_pred EEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhc
Confidence 38999999999742 4699999999999999999999999999999999999999999999864 2369
Q ss_pred EEeccCcccccccchhHHHHHHHhCCCCCHHHHHHHHhcCCCC------hhhhhc----cCCCCCHHHHHHHHHHHHhcc
Q psy208 343 GYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVS------GDLALQ----FVGSLSGGQKSRVAFARMCMA 412 (443)
Q Consensus 343 g~~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~------~~~~~~----~~~~LSgGekqRl~lA~al~~ 412 (443)
|.|.|+|.. .+.|+.+++.......+++++.+.+...+.. ++-.+. +..+||||||||++||||+++
T Consensus 1067 ~lVsQEP~L---F~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilR 1143 (1228)
T KOG0055|consen 1067 GLVSQEPVL---FNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILR 1143 (1228)
T ss_pred ceeccCchh---hcccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHc
Confidence 999999842 2457888886553334666666655543321 122233 445899999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 413 APNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 413 ~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
||+||||||.|++||.+|...+.++|.+-
T Consensus 1144 nPkILLLDEATSALDseSErvVQeALd~a 1172 (1228)
T KOG0055|consen 1144 NPKILLLDEATSALDSESERVVQEALDRA 1172 (1228)
T ss_pred CCCeeeeeccchhhhhhhHHHHHHHHHHh
Confidence 99999999999999999999999999753
No 353
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=3.7e-27 Score=218.26 Aligned_cols=166 Identities=26% Similarity=0.374 Sum_probs=136.5
Q ss_pred CeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCC--CCCCceEEEcCc------------e
Q psy208 275 PILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGII--SPTAGTRTVHRN------------L 340 (443)
Q Consensus 275 ~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~--~p~~G~i~~~~~------------~ 340 (443)
.+|+++||+.+..+.+.+|++|||+|++||+.+|+||||||||||.++|+|.- .+++|+|.+.+. .
T Consensus 2 ~~L~I~dLhv~v~~~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~ 81 (251)
T COG0396 2 MMLEIKDLHVEVEGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARA 81 (251)
T ss_pred ceeEEeeeEEEecCchhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhc
Confidence 47999999999964358999999999999999999999999999999999975 779999988642 2
Q ss_pred EEEEeccCcccccccchhHHHHHHHhCC----C-----CCHHHHHHHHhcCCCChhhhhccCCC-CCHHHHHHHHHHHHh
Q psy208 341 KFGYFSQHHVDQLDMNLRCVQLLEAAFP----G-----KPQEEYRRQLGGFGVSGDLALQFVGS-LSGGQKSRVAFARMC 410 (443)
Q Consensus 341 ~ig~~~Q~~~~~l~~~~~~~~~~~~~~~----~-----~~~~~~~~~L~~~gl~~~~~~~~~~~-LSgGekqRl~lA~al 410 (443)
.+...+|.|... +..+..+++..... . .....+++.++.++++..++++.+.. +|||||+|.-|+.++
T Consensus 82 GifLafQ~P~ei--~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~~ 159 (251)
T COG0396 82 GIFLAFQYPVEI--PGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLL 159 (251)
T ss_pred CCEEeecCCccC--CCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHHHHH
Confidence 356678887542 33444444432111 1 12456778899999998899999875 999999999999999
Q ss_pred ccCCCeEEEeCCCCCCCHHHHHHHHHHHcccc
Q psy208 411 MAAPNFLVLDEPTNHLDIETIEALGKAINKYT 442 (443)
Q Consensus 411 ~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~~ 442 (443)
+.+|++.|||||-||||+++.+.+.+.++.|.
T Consensus 160 ~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr 191 (251)
T COG0396 160 LLEPKLAILDEPDSGLDIDALKIVAEGINALR 191 (251)
T ss_pred hcCCCEEEecCCCcCccHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999988764
No 354
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.95 E-value=2.9e-28 Score=230.75 Aligned_cols=144 Identities=24% Similarity=0.438 Sum_probs=124.2
Q ss_pred eeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcC---------------ceEEEEeccCcccccccchhH
Q psy208 295 NVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR---------------NLKFGYFSQHHVDQLDMNLRC 359 (443)
Q Consensus 295 ~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~---------------~~~ig~~~Q~~~~~l~~~~~~ 359 (443)
+++|.++.-.++||.|++|||||||+|+|+|+.+|+.|.|.+++ ..+|||+||+. .+++..++
T Consensus 16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDA--RLFpH~tV 93 (352)
T COG4148 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDA--RLFPHYTV 93 (352)
T ss_pred EEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeecc--ccccceEE
Confidence 67888888789999999999999999999999999999998754 24799999985 46777777
Q ss_pred HHHHHHhCCCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHc
Q psy208 360 VQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAIN 439 (443)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~ 439 (443)
..++..........+...+.+.+|+. ..++++|.+|||||||||+|+|||+..|++|+||||.+.||..-+..++-.|.
T Consensus 94 rgNL~YG~~~~~~~~fd~iv~lLGI~-hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~EilpylE 172 (352)
T COG4148 94 RGNLRYGMWKSMRAQFDQLVALLGIE-HLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLE 172 (352)
T ss_pred ecchhhhhcccchHhHHHHHHHhCcH-HHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhHHHHHHH
Confidence 77776443333456778888889985 68899999999999999999999999999999999999999999999888876
Q ss_pred cc
Q psy208 440 KY 441 (443)
Q Consensus 440 ~~ 441 (443)
+.
T Consensus 173 RL 174 (352)
T COG4148 173 RL 174 (352)
T ss_pred HH
Confidence 54
No 355
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.95 E-value=1.1e-26 Score=272.72 Aligned_cols=159 Identities=19% Similarity=0.298 Sum_probs=129.2
Q ss_pred eEEEeeeEEEeCCC-CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCceEEEEeccCcccccc
Q psy208 276 ILQLSEVNFEYVPG-KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLD 354 (443)
Q Consensus 276 ~l~~~~l~~~y~~~-~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ig~~~Q~~~~~l~ 354 (443)
.++++|++|+|++. +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++ .++|++|++. +
T Consensus 636 ~i~~~~~~~~~~~~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--~i~yv~Q~~~--l- 710 (1522)
T TIGR00957 636 SITVHNATFTWARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG--SVAYVPQQAW--I- 710 (1522)
T ss_pred cEEEEEeEEEcCCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECC--EEEEEcCCcc--c-
Confidence 69999999999643 5799999999999999999999999999999999999999999998875 6999999863 2
Q ss_pred cchhHHHHHHHhCCCCCHHHHHHHHhcCCCChh----------hhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCC
Q psy208 355 MNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGD----------LALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTN 424 (443)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~----------~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn 424 (443)
.+.++.+++....+ ..++.+.+.+...++..+ ....+..+||||||||++||||++.+|+++||||||+
T Consensus 711 ~~~Ti~eNI~~g~~-~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLDEp~s 789 (1522)
T TIGR00957 711 QNDSLRENILFGKA-LNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLS 789 (1522)
T ss_pred cCCcHHHHhhcCCc-cCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 24577777753221 233444444443332211 2345678999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHcc
Q psy208 425 HLDIETIEALGKAINK 440 (443)
Q Consensus 425 ~LD~~s~~~l~~~L~~ 440 (443)
+||+.+.+.+.+.+..
T Consensus 790 aLD~~~~~~i~~~l~~ 805 (1522)
T TIGR00957 790 AVDAHVGKHIFEHVIG 805 (1522)
T ss_pred ccCHHHHHHHHHHHhh
Confidence 9999999999988753
No 356
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.95 E-value=3.7e-27 Score=275.93 Aligned_cols=161 Identities=23% Similarity=0.389 Sum_probs=134.5
Q ss_pred eEEEeeeEEEeCC-CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcC-----------ceEEE
Q psy208 276 ILQLSEVNFEYVP-GKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR-----------NLKFG 343 (443)
Q Consensus 276 ~l~~~~l~~~y~~-~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~ig 343 (443)
.|+++||+++|++ .+++|+|+||+|++|+++||+|++|||||||+++|+|+++ ++|+|.+++ +.+++
T Consensus 1217 ~I~f~nVs~~Y~~~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~is 1295 (1490)
T TIGR01271 1217 QMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFG 1295 (1490)
T ss_pred eEEEEEEEEEeCCCCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHhceE
Confidence 5999999999974 3689999999999999999999999999999999999996 799998864 23699
Q ss_pred EeccCcccccccchhHHHHHHHhCCCCCHHHHHHHHhcCCCChhh------hhcc----CCCCCHHHHHHHHHHHHhccC
Q psy208 344 YFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDL------ALQF----VGSLSGGQKSRVAFARMCMAA 413 (443)
Q Consensus 344 ~~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~------~~~~----~~~LSgGekqRl~lA~al~~~ 413 (443)
|+||++. +. ..|+.+++.. +...+++++.++|...++.... .+.. ..+||||||||++|||||+++
T Consensus 1296 ~IpQdp~--LF-~GTIR~NLdp-~~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~ 1371 (1490)
T TIGR01271 1296 VIPQKVF--IF-SGTFRKNLDP-YEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSK 1371 (1490)
T ss_pred EEeCCCc--cC-ccCHHHHhCc-ccCCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCC
Confidence 9999974 22 3477787742 2344678888999988874211 1222 237999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 414 PNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 414 p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
|+||||||||++||.++...+.+.|++.
T Consensus 1372 ~~ILlLDEaTS~lD~~Te~~I~~~L~~~ 1399 (1490)
T TIGR01271 1372 AKILLLDEPSAHLDPVTLQIIRKTLKQS 1399 (1490)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999998764
No 357
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.95 E-value=2.3e-27 Score=275.62 Aligned_cols=163 Identities=27% Similarity=0.344 Sum_probs=135.0
Q ss_pred eEEEeeeEEEeC---CCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCC---CCCceEEEcCc-------eEE
Q psy208 276 ILQLSEVNFEYV---PGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIIS---PTAGTRTVHRN-------LKF 342 (443)
Q Consensus 276 ~l~~~~l~~~y~---~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~---p~~G~i~~~~~-------~~i 342 (443)
+++++||+++|+ +.+.+|+|+|++|++|+++||+|||||||||||++|+|..+ |++|+|.+++. ..+
T Consensus 759 ~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~~i 838 (1394)
T TIGR00956 759 IFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRSI 838 (1394)
T ss_pred eEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhhcce
Confidence 589999999994 23579999999999999999999999999999999999997 78899988652 358
Q ss_pred EEeccCcccccccchhHHHHHHHh----CC-CCC----HHHHHHHHhcCCCChhhhhccCC----CCCHHHHHHHHHHHH
Q psy208 343 GYFSQHHVDQLDMNLRCVQLLEAA----FP-GKP----QEEYRRQLGGFGVSGDLALQFVG----SLSGGQKSRVAFARM 409 (443)
Q Consensus 343 g~~~Q~~~~~l~~~~~~~~~~~~~----~~-~~~----~~~~~~~L~~~gl~~~~~~~~~~----~LSgGekqRl~lA~a 409 (443)
||++|++. +....|+.+++... .+ ... .+.+.++++.+++. +..++.++ .|||||||||+||++
T Consensus 839 ~yv~Q~~~--~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~-~~~d~~v~~~~~~LSgGqrqRl~Ia~a 915 (1394)
T TIGR00956 839 GYVQQQDL--HLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEME-SYADAVVGVPGEGLNVEQRKRLTIGVE 915 (1394)
T ss_pred eeeccccc--CCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCCh-hhCCCeeCCCCCCCCHHHhhHHHHHHH
Confidence 99999753 34456777766421 11 112 23467889999986 45677776 799999999999999
Q ss_pred hccCCC-eEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 410 CMAAPN-FLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 410 l~~~p~-lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
|+.+|+ ||||||||+|||..+...+.+.|+++
T Consensus 916 L~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~l 948 (1394)
T TIGR00956 916 LVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKL 948 (1394)
T ss_pred HHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHH
Confidence 999997 99999999999999999999999875
No 358
>KOG0062|consensus
Probab=99.95 E-value=1.5e-27 Score=241.58 Aligned_cols=159 Identities=31% Similarity=0.474 Sum_probs=121.5
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc--eEEE-EeccCcccc
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN--LKFG-YFSQHHVDQ 352 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~--~~ig-~~~Q~~~~~ 352 (443)
-|.+.+++..|+ ++.+|.+-++++..|-++||+|+||+|||||||+|+. |.|..-+. ...| +++-. ...
T Consensus 80 Di~~~~fdLa~G-~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~------~~v~~f~veqE~~g~~t~~~-~~~ 151 (582)
T KOG0062|consen 80 DIHIDNFDLAYG-GKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN------GQVSGFHVEQEVRGDDTEAL-QSV 151 (582)
T ss_pred ceeeeeeeeeec-chhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh------cCcCccCchhheeccchHHH-hhh
Confidence 378889999996 6889999999999999999999999999999999986 33322110 0111 11110 111
Q ss_pred cccchhHHHHHHHh---CCCCCHHHHHH-HHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCCH
Q psy208 353 LDMNLRCVQLLEAA---FPGKPQEEYRR-QLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDI 428 (443)
Q Consensus 353 l~~~~~~~~~~~~~---~~~~~~~~~~~-~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD~ 428 (443)
+..+....+++... .......++.. +|..+||+.+...+|+++||||.|.|++|||||..+|++|||||||||||+
T Consensus 152 l~~D~~~~dfl~~e~~l~~~~~l~ei~~~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLDv 231 (582)
T KOG0062|consen 152 LESDTERLDFLAEEKELLAGLTLEEIYDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDV 231 (582)
T ss_pred hhccHHHHHHHHhhhhhhccchHHHHHHHHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEeecCCcccchh
Confidence 22333333443321 11113344555 899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcccc
Q psy208 429 ETIEALGKAINKYT 442 (443)
Q Consensus 429 ~s~~~l~~~L~~~~ 442 (443)
.++.||++.|..|+
T Consensus 232 ~av~WLe~yL~t~~ 245 (582)
T KOG0062|consen 232 VAVAWLENYLQTWK 245 (582)
T ss_pred HHHHHHHHHHhhCC
Confidence 99999999999886
No 359
>KOG0056|consensus
Probab=99.95 E-value=9.9e-28 Score=240.75 Aligned_cols=162 Identities=29% Similarity=0.462 Sum_probs=129.6
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-----------eEEEE
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-----------LKFGY 344 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~ig~ 344 (443)
-++++||+|.|++++++|+||||++.+|+.+|||||+|+||||++|+|..++...+|.|.+++. ..||.
T Consensus 537 ~i~fsnvtF~Y~p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IGV 616 (790)
T KOG0056|consen 537 KIEFSNVTFAYDPGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIGV 616 (790)
T ss_pred eEEEEEeEEecCCCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhcCc
Confidence 4899999999998999999999999999999999999999999999999999999999999752 36999
Q ss_pred eccCcccccccchhHHHHHHHhCCCCCHHHHHHHHhc-------CCCChh---hhhccCCCCCHHHHHHHHHHHHhccCC
Q psy208 345 FSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGG-------FGVSGD---LALQFVGSLSGGQKSRVAFARMCMAAP 414 (443)
Q Consensus 345 ~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~-------~gl~~~---~~~~~~~~LSgGekqRl~lA~al~~~p 414 (443)
+||+... .+.|+..++...-+..+.+++.+.... ++|+.. ....+.-.|||||||||+|||+++..|
T Consensus 617 VPQDtvL---FNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P 693 (790)
T KOG0056|consen 617 VPQDTVL---FNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAP 693 (790)
T ss_pred ccCccee---ecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCC
Confidence 9998642 233555555444444444444433322 233321 112234479999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHcc
Q psy208 415 NFLVLDEPTNHLDIETIEALGKAINK 440 (443)
Q Consensus 415 ~lLiLDEPTn~LD~~s~~~l~~~L~~ 440 (443)
.+++|||.|++||..+..++..+|.+
T Consensus 694 ~iIlLDEATSALDT~tER~IQaaL~r 719 (790)
T KOG0056|consen 694 SIILLDEATSALDTNTERAIQAALAR 719 (790)
T ss_pred cEEEEcchhhhcCCccHHHHHHHHHH
Confidence 99999999999999999999988865
No 360
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.94 E-value=2.7e-27 Score=213.76 Aligned_cols=163 Identities=25% Similarity=0.345 Sum_probs=137.4
Q ss_pred CeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-------------eE
Q psy208 275 PILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-------------LK 341 (443)
Q Consensus 275 ~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-------------~~ 341 (443)
++|+++||+++|+ +..+++++||+|.+|+.-+|||||||||||++.+|+|..+|+.|++.+++. ..
T Consensus 4 ~iL~~~~vsVsF~-GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~G 82 (249)
T COG4674 4 IILYLDGVSVSFG-GFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAG 82 (249)
T ss_pred ceEEEeceEEEEc-ceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHhc
Confidence 5799999999996 578999999999999999999999999999999999999999999988652 24
Q ss_pred EEEeccCcccccccchhHHHHHHHh--------------CCCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHH
Q psy208 342 FGYFSQHHVDQLDMNLRCVQLLEAA--------------FPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFA 407 (443)
Q Consensus 342 ig~~~Q~~~~~l~~~~~~~~~~~~~--------------~~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA 407 (443)
||--+|.|. .....++.+++.-. .......++..+|+..|+. +..+...+.||-||||++.|+
T Consensus 83 IGRKFQ~Pt--Vfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~-~~~~~~A~~LSHGqKQwLEIG 159 (249)
T COG4674 83 IGRKFQKPT--VFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLG-DERDRLAALLSHGQKQWLEIG 159 (249)
T ss_pred cCccccCCe--ehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccc-hhhhhhhhhhccchhhhhhhh
Confidence 777788763 34556666665321 1122344688999999996 577889999999999999999
Q ss_pred HHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 408 RMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 408 ~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
..++++|++|+||||++|+--+..+...+.|+..
T Consensus 160 Mll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~l 193 (249)
T COG4674 160 MLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSL 193 (249)
T ss_pred eeeccCCcEEEecCccCCCcHHHHHHHHHHHHHH
Confidence 9999999999999999999998888888887754
No 361
>PLN03130 ABC transporter C family member; Provisional
Probab=99.94 E-value=1.2e-26 Score=272.46 Aligned_cols=159 Identities=26% Similarity=0.420 Sum_probs=130.6
Q ss_pred CeEEEeeeEEEeCC--CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCC-ceEEEcCceEEEEeccCccc
Q psy208 275 PILQLSEVNFEYVP--GKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTA-GTRTVHRNLKFGYFSQHHVD 351 (443)
Q Consensus 275 ~~l~~~~l~~~y~~--~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~-G~i~~~~~~~ig~~~Q~~~~ 351 (443)
..|+++|++|+|++ ++++|+|+||+|++|+.++|+||+|||||||+++|+|+++|++ |+|.+.+ .++|++|++.
T Consensus 613 ~~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l~~--~Iayv~Q~p~- 689 (1622)
T PLN03130 613 PAISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRG--TVAYVPQVSW- 689 (1622)
T ss_pred CceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEEcC--eEEEEcCccc-
Confidence 35999999999964 2579999999999999999999999999999999999999999 9998743 6999999973
Q ss_pred ccccchhHHHHHHHhCCCCCHHHHHHHHhcCCCChhhh----------hccCCCCCHHHHHHHHHHHHhccCCCeEEEeC
Q psy208 352 QLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLA----------LQFVGSLSGGQKSRVAFARMCMAAPNFLVLDE 421 (443)
Q Consensus 352 ~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~----------~~~~~~LSgGekqRl~lA~al~~~p~lLiLDE 421 (443)
. .+.|+.+++.-..+ .+++++.+++...++..+.. .....+|||||||||+||||++.+|++|||||
T Consensus 690 L--fngTIreNI~fg~~-~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~IlLLDE 766 (1622)
T PLN03130 690 I--FNATVRDNILFGSP-FDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDD 766 (1622)
T ss_pred c--CCCCHHHHHhCCCc-ccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEEEECC
Confidence 2 34678888764322 35677888888777753321 12345799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHH-HHHc
Q psy208 422 PTNHLDIETIEALG-KAIN 439 (443)
Q Consensus 422 PTn~LD~~s~~~l~-~~L~ 439 (443)
||++||+.+.+.+. +.+.
T Consensus 767 ptSALD~~~~~~I~~~~l~ 785 (1622)
T PLN03130 767 PLSALDAHVGRQVFDKCIK 785 (1622)
T ss_pred CccccCHHHHHHHHHHHhh
Confidence 99999999887765 4444
No 362
>PLN03232 ABC transporter C family member; Provisional
Probab=99.94 E-value=1.3e-26 Score=271.73 Aligned_cols=158 Identities=25% Similarity=0.369 Sum_probs=128.4
Q ss_pred CeEEEeeeEEEeCC--CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCceEEEEeccCcccc
Q psy208 275 PILQLSEVNFEYVP--GKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQ 352 (443)
Q Consensus 275 ~~l~~~~l~~~y~~--~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ig~~~Q~~~~~ 352 (443)
..++++|++|+|++ ++++|+|+||+|++|++++|+||+|||||||+++|+|+++|++|.+.. -+..++|++|++. .
T Consensus 613 ~~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~-~~~~Iayv~Q~p~-L 690 (1495)
T PLN03232 613 PAISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVV-IRGSVAYVPQVSW-I 690 (1495)
T ss_pred CcEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEEE-ecCcEEEEcCccc-c
Confidence 35999999999964 357999999999999999999999999999999999999999987643 2346999999973 2
Q ss_pred cccchhHHHHHHHhCCCCCHHHHHHHHhcCCCChhhh----------hccCCCCCHHHHHHHHHHHHhccCCCeEEEeCC
Q psy208 353 LDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLA----------LQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEP 422 (443)
Q Consensus 353 l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~----------~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEP 422 (443)
.+.|+.+++.-.. ..+++++.++++..++..+.. .....+||||||||++||||++++|++||||||
T Consensus 691 --f~gTIreNI~fg~-~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlLLDEp 767 (1495)
T PLN03232 691 --FNATVRENILFGS-DFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDP 767 (1495)
T ss_pred --ccccHHHHhhcCC-ccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 2457888876432 245677778887777643321 123447999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHH
Q psy208 423 TNHLDIETIEALGKA 437 (443)
Q Consensus 423 Tn~LD~~s~~~l~~~ 437 (443)
|++||..+.+.+.+.
T Consensus 768 tSaLD~~t~~~I~~~ 782 (1495)
T PLN03232 768 LSALDAHVAHQVFDS 782 (1495)
T ss_pred ccccCHHHHHHHHHH
Confidence 999999998877543
No 363
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.94 E-value=4.5e-27 Score=235.84 Aligned_cols=131 Identities=26% Similarity=0.383 Sum_probs=109.0
Q ss_pred EECCCCCcHHHHHHHHHcCCCCCCceEEEcCc---------eEEEEeccCcccccccchhHHHHHHHh--CCCCC----H
Q psy208 308 IVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN---------LKFGYFSQHHVDQLDMNLRCVQLLEAA--FPGKP----Q 372 (443)
Q Consensus 308 iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~---------~~ig~~~Q~~~~~l~~~~~~~~~~~~~--~~~~~----~ 372 (443)
|+||||||||||+|+|+|+++|++|+|.+.+. ..++|++|++. +.+..++.+++... ..... .
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~--l~~~~tv~enl~~~~~~~~~~~~~~~ 78 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYA--LFPHMTVEENVAFGLKMRKVPRAEIK 78 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEecCcc--ccCCCcHHHHHHHHHhhcCCCHHHHH
Confidence 68999999999999999999999999988542 25899999853 44556777766432 11111 2
Q ss_pred HHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 373 EEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 373 ~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
..+..+++.+++. +..++++.+|||||||||+|||+|+.+|++|||||||++||+.+++.+.+.|.++
T Consensus 79 ~~~~~~l~~~~l~-~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l 146 (325)
T TIGR01187 79 PRVLEALRLVQLE-EFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTI 146 (325)
T ss_pred HHHHHHHHHcCCc-chhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHH
Confidence 3567889999996 5678999999999999999999999999999999999999999999999998764
No 364
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.94 E-value=5.6e-27 Score=203.51 Aligned_cols=159 Identities=28% Similarity=0.402 Sum_probs=131.0
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCC---CceEEEcC---------ceEEE
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPT---AGTRTVHR---------NLKFG 343 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~---~G~i~~~~---------~~~ig 343 (443)
++.++||+...+ +..+|.++||+|.+||++-|.||+|||||||+..+.|.+.++ +|+++++. ...+|
T Consensus 2 ~l~l~nvsl~l~-g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~G 80 (213)
T COG4136 2 MLCLKNVSLRLP-GSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIG 80 (213)
T ss_pred ceeeeeeeecCC-CceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhhee
Confidence 578999999885 578999999999999999999999999999999999999875 78888764 24699
Q ss_pred EeccCcccccccchhHHHHHHHhCCC----C-CHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEE
Q psy208 344 YFSQHHVDQLDMNLRCVQLLEAAFPG----K-PQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLV 418 (443)
Q Consensus 344 ~~~Q~~~~~l~~~~~~~~~~~~~~~~----~-~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLi 418 (443)
+++|++ .+.+..++.+++.-..+. . ....+...|.+.|+. ...++.|.+||||||.||+|.|+|+..|++|+
T Consensus 81 iLFQD~--lLFphlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~-g~f~~dP~tlSGGQrARvaL~R~Lla~Pk~lL 157 (213)
T COG4136 81 ILFQDA--LLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLD-GAFHQDPATLSGGQRARVALLRALLAQPKALL 157 (213)
T ss_pred eeeccc--ccccccccccceEEecCcccccHHHHhhHHHHHHHhccc-hhhhcChhhcCcchHHHHHHHHHHHhCcceee
Confidence 999986 345555655554322221 1 233466788999987 46789999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHH
Q psy208 419 LDEPTNHLDIETIEALGKAI 438 (443)
Q Consensus 419 LDEPTn~LD~~s~~~l~~~L 438 (443)
||||++.||..-+..+.+..
T Consensus 158 LDEPFS~LD~ALR~qfR~wV 177 (213)
T COG4136 158 LDEPFSRLDVALRDQFRQWV 177 (213)
T ss_pred eCCchhHHHHHHHHHHHHHH
Confidence 99999999998888777654
No 365
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.94 E-value=2e-26 Score=227.61 Aligned_cols=169 Identities=20% Similarity=0.333 Sum_probs=140.8
Q ss_pred CCeEEEeeeEEEeC---CCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCC-----CCceEEEcC-------
Q psy208 274 PPILQLSEVNFEYV---PGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISP-----TAGTRTVHR------- 338 (443)
Q Consensus 274 ~~~l~~~~l~~~y~---~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p-----~~G~i~~~~------- 338 (443)
.++|+++|+++.|. +...++++|||+|.+||.+||||.+|||||-..+.|+|+++. -+|+|.+++
T Consensus 4 ~~lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~s 83 (534)
T COG4172 4 MPLLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAAS 83 (534)
T ss_pred CcceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCC
Confidence 46899999999995 235799999999999999999999999999999999999865 367887653
Q ss_pred --------ceEEEEeccCcccccccchhHHHHHHHh---CCCC----CHHHHHHHHhcCCCCh--hhhhccCCCCCHHHH
Q psy208 339 --------NLKFGYFSQHHVDQLDMNLRCVQLLEAA---FPGK----PQEEYRRQLGGFGVSG--DLALQFVGSLSGGQK 401 (443)
Q Consensus 339 --------~~~ig~~~Q~~~~~l~~~~~~~~~~~~~---~~~~----~~~~~~~~L~~~gl~~--~~~~~~~~~LSgGek 401 (443)
..+|+++||+|...+++-.++...+... ..+. ...++.++|..+|+.. ...+.+|++||||||
T Consensus 84 e~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGqR 163 (534)
T COG4172 84 ERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQR 163 (534)
T ss_pred HHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcchh
Confidence 2379999999988888877765544321 1122 2456778999999964 346789999999999
Q ss_pred HHHHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHcccc
Q psy208 402 SRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKYT 442 (443)
Q Consensus 402 qRl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~~ 442 (443)
|||.||.||+.+|++||.||||.+||...+.++.+.|++..
T Consensus 164 QRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq 204 (534)
T COG4172 164 QRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQ 204 (534)
T ss_pred hHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998753
No 366
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.94 E-value=1e-26 Score=251.81 Aligned_cols=150 Identities=27% Similarity=0.336 Sum_probs=124.3
Q ss_pred CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCC---CceEEEcCce--------EEEEeccCcccccccch
Q psy208 289 GKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPT---AGTRTVHRNL--------KFGYFSQHHVDQLDMNL 357 (443)
Q Consensus 289 ~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~---~G~i~~~~~~--------~ig~~~Q~~~~~l~~~~ 357 (443)
++++|+|+|++|++|+.++|+|||||||||||++|+|..+|. +|+|.+++.. .+||++|++ .+....
T Consensus 37 ~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~--~~~~~l 114 (617)
T TIGR00955 37 RKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDD--LFIPTL 114 (617)
T ss_pred ccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeecccc--ccCccC
Confidence 467999999999999999999999999999999999999885 7999886532 479999985 345566
Q ss_pred hHHHHHHH--h--CCC-CC----HHHHHHHHhcCCCChhhhhccCC------CCCHHHHHHHHHHHHhccCCCeEEEeCC
Q psy208 358 RCVQLLEA--A--FPG-KP----QEEYRRQLGGFGVSGDLALQFVG------SLSGGQKSRVAFARMCMAAPNFLVLDEP 422 (443)
Q Consensus 358 ~~~~~~~~--~--~~~-~~----~~~~~~~L~~~gl~~~~~~~~~~------~LSgGekqRl~lA~al~~~p~lLiLDEP 422 (443)
|+.+++.- . .+. .. ...+..+++.+|+. +..+++++ .|||||||||+||++|+.+|++|+||||
T Consensus 115 TV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEP 193 (617)
T TIGR00955 115 TVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLR-KCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEP 193 (617)
T ss_pred cHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCch-hcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCC
Confidence 77776642 1 111 11 23577889999986 45667776 4999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHccc
Q psy208 423 TNHLDIETIEALGKAINKY 441 (443)
Q Consensus 423 Tn~LD~~s~~~l~~~L~~~ 441 (443)
|+|||+.+...+.+.|++.
T Consensus 194 tsgLD~~~~~~l~~~L~~l 212 (617)
T TIGR00955 194 TSGLDSFMAYSVVQVLKGL 212 (617)
T ss_pred CcchhHHHHHHHHHHHHHH
Confidence 9999999999999999865
No 367
>KOG0927|consensus
Probab=99.94 E-value=2.5e-26 Score=233.90 Aligned_cols=160 Identities=28% Similarity=0.422 Sum_probs=123.4
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCceEEEEeccCcccc---
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQ--- 352 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ig~~~Q~~~~~--- 352 (443)
-+.++|++++|. +..+++|++|++.+|+++||+|+|||||||+|++|.|-..|..-.+.+. .+.++....
T Consensus 75 dvk~~sls~s~~-g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y------~ls~e~~ps~~~ 147 (614)
T KOG0927|consen 75 DVKIESLSLSFH-GVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFY------LLSREIEPSEKQ 147 (614)
T ss_pred cceeeeeeeccC-CceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchh------hhcccCCCchHH
Confidence 489999999996 5789999999999999999999999999999999999999865544221 111111000
Q ss_pred ----cc-----------------------cch----hHHHHHHHhCCCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHH
Q psy208 353 ----LD-----------------------MNL----RCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQK 401 (443)
Q Consensus 353 ----l~-----------------------~~~----~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGek 401 (443)
.. ... ...+.+........+.++..+|..+||.....++.+.+||||++
T Consensus 148 av~~v~~~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~SgGwr 227 (614)
T KOG0927|consen 148 AVQAVVMETDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLSGGWR 227 (614)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhccCchHH
Confidence 00 000 00000001111122345667888999999999999999999999
Q ss_pred HHHHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHcccc
Q psy208 402 SRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKYT 442 (443)
Q Consensus 402 qRl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~~ 442 (443)
.|++|||+|+.+|++|+|||||||||++++.+|++.|.+|.
T Consensus 228 mR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d 268 (614)
T KOG0927|consen 228 MRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYD 268 (614)
T ss_pred HHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999885
No 368
>PLN03140 ABC transporter G family member; Provisional
Probab=99.94 E-value=5.4e-26 Score=263.95 Aligned_cols=163 Identities=21% Similarity=0.274 Sum_probs=132.7
Q ss_pred eEEEeeeEEEeC------------CCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCC--CCceEEEcCc--
Q psy208 276 ILQLSEVNFEYV------------PGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISP--TAGTRTVHRN-- 339 (443)
Q Consensus 276 ~l~~~~l~~~y~------------~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p--~~G~i~~~~~-- 339 (443)
.++++||++.++ +.+.+|+|+|+.|++|++++|+|||||||||||++|+|..++ .+|+|.+++.
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~ 946 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 946 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccC
Confidence 589999999874 124699999999999999999999999999999999999763 7899987641
Q ss_pred ------eEEEEeccCcccccccchhHHHHHHHh----CC-CCCH----HHHHHHHhcCCCChhhhhccC-----CCCCHH
Q psy208 340 ------LKFGYFSQHHVDQLDMNLRCVQLLEAA----FP-GKPQ----EEYRRQLGGFGVSGDLALQFV-----GSLSGG 399 (443)
Q Consensus 340 ------~~ig~~~Q~~~~~l~~~~~~~~~~~~~----~~-~~~~----~~~~~~L~~~gl~~~~~~~~~-----~~LSgG 399 (443)
..+||++|+.. +.+..|+.+.+... .+ ..+. ..+.++++.+++. +..++.+ ..||||
T Consensus 947 ~~~~~~~~igyv~Q~d~--~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~-~~~~~~vg~~~~~~LSgG 1023 (1470)
T PLN03140 947 KQETFARISGYCEQNDI--HSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELD-NLKDAIVGLPGVTGLSTE 1023 (1470)
T ss_pred ChHHhhhheEEEccccc--cCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCCh-hHhCCccCCCCCCCcCHH
Confidence 24899999853 44566777776421 11 1122 2367889999986 4566665 589999
Q ss_pred HHHHHHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 400 QKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 400 ekqRl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
|||||+||++|+.+|++|+|||||+|||+.+...+.+.|+++
T Consensus 1024 erkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l 1065 (1470)
T PLN03140 1024 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1065 (1470)
T ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999875
No 369
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.94 E-value=1.3e-26 Score=212.38 Aligned_cols=162 Identities=27% Similarity=0.389 Sum_probs=130.3
Q ss_pred eEEEeeeEEEeCCC----CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-----------e
Q psy208 276 ILQLSEVNFEYVPG----KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-----------L 340 (443)
Q Consensus 276 ~l~~~~l~~~y~~~----~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~ 340 (443)
|+.+.|+.+.|..+ +++|.++|++|..|+++.|+|.||||||||+++|+|.++|++|+|.+++. .
T Consensus 1 Mi~~~~~~~~f~~g~~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~ 80 (263)
T COG1101 1 MISLSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRAN 80 (263)
T ss_pred CcccccceeeecCCChhHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhh
Confidence 35677777776533 57999999999999999999999999999999999999999999998642 1
Q ss_pred EEEEeccCcccccccchhHHHHHHHhC-C----CC-------CHHHHHHHHhcCC--CChhhhhccCCCCCHHHHHHHHH
Q psy208 341 KFGYFSQHHVDQLDMNLRCVQLLEAAF-P----GK-------PQEEYRRQLGGFG--VSGDLALQFVGSLSGGQKSRVAF 406 (443)
Q Consensus 341 ~ig~~~Q~~~~~l~~~~~~~~~~~~~~-~----~~-------~~~~~~~~L~~~g--l~~~~~~~~~~~LSgGekqRl~l 406 (443)
.++-++|+|.....+..|+.+++.-.. . +. .....+..+..++ +. ..++.+++-|||||||-|+|
T Consensus 81 ~larVfQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLe-nrL~~~iglLSGGQRQalsL 159 (263)
T COG1101 81 LLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLE-NRLSDRIGLLSGGQRQALSL 159 (263)
T ss_pred HHHHHhcchhhCCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchh-hhhcChhhhccchHHHHHHH
Confidence 356688998777778888888874321 1 11 1223445566544 43 46678999999999999999
Q ss_pred HHHhccCCCeEEEeCCCCCCCHHHHHHHHHHH
Q psy208 407 ARMCMAAPNFLVLDEPTNHLDIETIEALGKAI 438 (443)
Q Consensus 407 A~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L 438 (443)
+.|.+++|++|+|||-|++|||.+.+.+++.-
T Consensus 160 ~MAtl~~pkiLLLDEHTAALDPkta~~vm~lT 191 (263)
T COG1101 160 LMATLHPPKILLLDEHTAALDPKTAEFVMELT 191 (263)
T ss_pred HHHhcCCCcEEEecchhhcCCcchHHHHHHHH
Confidence 99999999999999999999999999888754
No 370
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.93 E-value=1e-25 Score=211.06 Aligned_cols=148 Identities=28% Similarity=0.328 Sum_probs=116.4
Q ss_pred CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCceEEEEeccCcccccccchhHHHHHH--HhC
Q psy208 290 KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLE--AAF 367 (443)
Q Consensus 290 ~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ig~~~Q~~~~~l~~~~~~~~~~~--~~~ 367 (443)
.++|+||||++.+||++||||+||||||||||+|+|.++|++|+|.+.++. +++..- ...+++..|..+++. ..+
T Consensus 40 ~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v--~~li~l-g~Gf~pelTGreNi~l~~~~ 116 (249)
T COG1134 40 FWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKV--APLIEL-GAGFDPELTGRENIYLRGLI 116 (249)
T ss_pred EEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceE--ehhhhc-ccCCCcccchHHHHHHHHHH
Confidence 469999999999999999999999999999999999999999999987643 322211 123455566666543 334
Q ss_pred CCCCHHHHH----HHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 368 PGKPQEEYR----RQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 368 ~~~~~~~~~----~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
.+.+.+++. .+.+--.+ ++..++|+.++|.||+.||+++.+...+|++||+||-.+--|+.-++.-.+.+.++
T Consensus 117 ~G~~~~ei~~~~~eIieFaEL-G~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~ 193 (249)
T COG1134 117 LGLTRKEIDEKVDEIIEFAEL-GDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNEL 193 (249)
T ss_pred hCccHHHHHHHHHHHHHHHHH-HHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHH
Confidence 444444333 33332233 47889999999999999999999999999999999999999999998888877765
No 371
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.93 E-value=9.1e-26 Score=264.23 Aligned_cols=142 Identities=23% Similarity=0.371 Sum_probs=113.6
Q ss_pred CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCceEEEEeccCcccccccchhHHHHHHHhCCC
Q psy208 290 KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEAAFPG 369 (443)
Q Consensus 290 ~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ig~~~Q~~~~~l~~~~~~~~~~~~~~~~ 369 (443)
+++|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|.+.+ .++|++|++. +. ..++.+++....+
T Consensus 439 ~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g--~iayv~Q~~~--l~-~~Ti~eNI~~g~~- 512 (1490)
T TIGR01271 439 TPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG--RISFSPQTSW--IM-PGTIKDNIIFGLS- 512 (1490)
T ss_pred CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC--EEEEEeCCCc--cC-CccHHHHHHhccc-
Confidence 4689999999999999999999999999999999999999999999865 6999999863 22 2477887753221
Q ss_pred CCHHHHHHHHhcCCCChh----------hhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHH
Q psy208 370 KPQEEYRRQLGGFGVSGD----------LALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKA 437 (443)
Q Consensus 370 ~~~~~~~~~L~~~gl~~~----------~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~ 437 (443)
.....+.+.+..+++..+ ....++.+|||||||||+||||++.+|+++||||||++||+.+.+.+.+.
T Consensus 513 ~~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~ 590 (1490)
T TIGR01271 513 YDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFES 590 (1490)
T ss_pred cchHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHH
Confidence 222333333333333211 23345789999999999999999999999999999999999999999874
No 372
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.93 E-value=1.5e-25 Score=213.62 Aligned_cols=150 Identities=20% Similarity=0.203 Sum_probs=102.2
Q ss_pred CCceeeeeeEEEeCCCEEEEECCCCCcHHHHH-HHHHc--------------------CCCCCCceEEEcCceEEEEecc
Q psy208 289 GKPILTNVCLGATLESRICIVGDNGAGKTTLL-KIIMG--------------------IISPTAGTRTVHRNLKFGYFSQ 347 (443)
Q Consensus 289 ~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLl-k~l~G--------------------~~~p~~G~i~~~~~~~ig~~~Q 347 (443)
+..+|+++||+|++||++||+|+||||||||+ .+|.. ...|..+.+. ....++..|
T Consensus 7 ~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 83 (226)
T cd03270 7 REHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMDKPDVDSIE---GLSPAIAID 83 (226)
T ss_pred hhhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHHhhcccchhhhhhcccCcccccccc---CCCceEEec
Confidence 45799999999999999999999999999996 33321 1112211110 012233333
Q ss_pred CcccccccchhHH------HHHHHhCCCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCC--CeEEE
Q psy208 348 HHVDQLDMNLRCV------QLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAP--NFLVL 419 (443)
Q Consensus 348 ~~~~~l~~~~~~~------~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p--~lLiL 419 (443)
++...+.+..++. ..+...+.........+.|..+++.....++++.+||||||||++||++++.+| ++|||
T Consensus 84 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~~~llll 163 (226)
T cd03270 84 QKTTSRNPRSTVGTVTEIYDYLRLLFARVGIRERLGFLVDVGLGYLTLSRSAPTLSGGEAQRIRLATQIGSGLTGVLYVL 163 (226)
T ss_pred CCCCCCCCCccHHHHHHHHHHHHHHhhhhhHHHHHHHHHHCCCCcccccCccCcCCHHHHHHHHHHHHHHhCCCCCEEEE
Confidence 3322222221211 111111121122333578899999644578999999999999999999999998 59999
Q ss_pred eCCCCCCCHHHHHHHHHHHccc
Q psy208 420 DEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 420 DEPTn~LD~~s~~~l~~~L~~~ 441 (443)
||||++||+.++..+.+.|.++
T Consensus 164 DEPt~gLD~~~~~~l~~~l~~~ 185 (226)
T cd03270 164 DEPSIGLHPRDNDRLIETLKRL 185 (226)
T ss_pred eCCccCCCHHHHHHHHHHHHHH
Confidence 9999999999999999998764
No 373
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=8.7e-26 Score=224.26 Aligned_cols=162 Identities=30% Similarity=0.428 Sum_probs=131.9
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-----------eEEEE
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-----------LKFGY 344 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~ig~ 344 (443)
.+.+.||+|.|.+.+++|+++||++.+|+.++|+|++|+||||++++|..++++.+|.|.+++. ..||.
T Consensus 262 ~v~F~~V~F~y~~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq~slR~aIg~ 341 (497)
T COG5265 262 AVAFINVSFAYDPRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGI 341 (497)
T ss_pred eEEEEEEEeeccccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhHHHHHHHHhCc
Confidence 4889999999988899999999999999999999999999999999999999999999998652 35999
Q ss_pred eccCcccccccchhHHHHHHHhCCCCCHHHHHHHHhcCCCC------hhhhhccC----CCCCHHHHHHHHHHHHhccCC
Q psy208 345 FSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVS------GDLALQFV----GSLSGGQKSRVAFARMCMAAP 414 (443)
Q Consensus 345 ~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~------~~~~~~~~----~~LSgGekqRl~lA~al~~~p 414 (443)
+||+.... +.+...++...-+..+.+++...++.+.+. ++-.+..+ -.|||||||||+|||+++.+|
T Consensus 342 VPQDtvLF---NDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~ilk~p 418 (497)
T COG5265 342 VPQDTVLF---NDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNP 418 (497)
T ss_pred Ccccceeh---hhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHHhcCC
Confidence 99987432 335555555444555566655555444332 12223333 369999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHcc
Q psy208 415 NFLVLDEPTNHLDIETIEALGKAINK 440 (443)
Q Consensus 415 ~lLiLDEPTn~LD~~s~~~l~~~L~~ 440 (443)
++|+|||.|+.||..+.+++...|+.
T Consensus 419 ~il~~deatsaldt~te~~iq~~l~~ 444 (497)
T COG5265 419 PILILDEATSALDTHTEQAIQAALRE 444 (497)
T ss_pred CEEEEehhhhHhhhhHHHHHHHHHHH
Confidence 99999999999999999999998875
No 374
>KOG0061|consensus
Probab=99.92 E-value=7e-25 Score=236.16 Aligned_cols=164 Identities=27% Similarity=0.397 Sum_probs=138.0
Q ss_pred eEEEeeeEEEeCCC----CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCC---CCceEEEcC--------ce
Q psy208 276 ILQLSEVNFEYVPG----KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISP---TAGTRTVHR--------NL 340 (443)
Q Consensus 276 ~l~~~~l~~~y~~~----~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p---~~G~i~~~~--------~~ 340 (443)
-+.++|++....+. +.+|++||..+++|+++||+||+||||||||++|+|.... .+|+|.+++ ..
T Consensus 25 ~~~~~~~~~~~~~~~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~ 104 (613)
T KOG0061|consen 25 KLSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRK 104 (613)
T ss_pred eeEEEEEEEEecCCCCccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhhh
Confidence 47788888877543 6799999999999999999999999999999999999875 789999976 23
Q ss_pred EEEEeccCcccccccchhHHHHHHH----hCCC-----CCHHHHHHHHhcCCCChhhhhccCC-----CCCHHHHHHHHH
Q psy208 341 KFGYFSQHHVDQLDMNLRCVQLLEA----AFPG-----KPQEEYRRQLGGFGVSGDLALQFVG-----SLSGGQKSRVAF 406 (443)
Q Consensus 341 ~ig~~~Q~~~~~l~~~~~~~~~~~~----~~~~-----~~~~~~~~~L~~~gl~~~~~~~~~~-----~LSgGekqRl~l 406 (443)
..||+.|+. .+.+..|+.+.+.- ..+. .....+.+++..+|+. ...+..++ .+|||||+||+|
T Consensus 105 ~s~yV~QdD--~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~-~~~~t~ig~~~~rgiSGGErkRvsi 181 (613)
T KOG0061|consen 105 ISGYVQQDD--VLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLE-KCADTLIGNPGIRGLSGGERKRVSI 181 (613)
T ss_pred eeEEEcccc--cccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCh-hhccceecCCCCCccccchhhHHHH
Confidence 589999973 56777888877642 2222 1234678899999997 56777776 499999999999
Q ss_pred HHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHcccc
Q psy208 407 ARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKYT 442 (443)
Q Consensus 407 A~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~~ 442 (443)
|.-++.+|.+|+|||||+|||..+...+.+.|+++.
T Consensus 182 a~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA 217 (613)
T KOG0061|consen 182 ALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLA 217 (613)
T ss_pred HHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHH
Confidence 999999999999999999999999999999998764
No 375
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.92 E-value=1.2e-23 Score=220.88 Aligned_cols=163 Identities=26% Similarity=0.391 Sum_probs=138.7
Q ss_pred CCeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCceEEEEeccCccccc
Q psy208 274 PPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQL 353 (443)
Q Consensus 274 ~~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ig~~~Q~~~~~l 353 (443)
...|+++|++..-+++.+++++.||+|.+|+++.|.|+||||||||+|+|+|+.|--+|+|.......+-|+||.|. +
T Consensus 390 ~~~i~~~nl~l~~p~~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~~~~lflpQ~PY--~ 467 (604)
T COG4178 390 DHGITLENLSLRTPDGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRPY--L 467 (604)
T ss_pred cceeEEeeeeEECCCCCeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCCCCceEEecCCCC--C
Confidence 46799999999988778999999999999999999999999999999999999999999998876777899999975 2
Q ss_pred ccchhHHHHHHHhCC--CCCHHHHHHHHhcCCCChhhhhc------cCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCC
Q psy208 354 DMNLRCVQLLEAAFP--GKPQEEYRRQLGGFGVSGDLALQ------FVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNH 425 (443)
Q Consensus 354 ~~~~~~~~~~~~~~~--~~~~~~~~~~L~~~gl~~~~~~~------~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~ 425 (443)
+ ..+..+.+..-.. ..+++++.+.|.++|+. +..++ =-..||+||||||++||+++++|++++|||.|++
T Consensus 468 p-~GtLre~l~YP~~~~~~~d~~l~~vL~~vgL~-~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsA 545 (604)
T COG4178 468 P-QGTLREALCYPNAAPDFSDAELVAVLHKVGLG-DLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSA 545 (604)
T ss_pred C-CccHHHHHhCCCCCCCCChHHHHHHHHHcCcH-HHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhc
Confidence 2 3366666653211 25678899999999984 22221 1247999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHcc
Q psy208 426 LDIETIEALGKAINK 440 (443)
Q Consensus 426 LD~~s~~~l~~~L~~ 440 (443)
||.++...+.+.|++
T Consensus 546 LDe~~e~~l~q~l~~ 560 (604)
T COG4178 546 LDEETEDRLYQLLKE 560 (604)
T ss_pred cChHHHHHHHHHHHh
Confidence 999999999999986
No 376
>PTZ00243 ABC transporter; Provisional
Probab=99.92 E-value=1.4e-24 Score=254.64 Aligned_cols=141 Identities=24% Similarity=0.307 Sum_probs=112.7
Q ss_pred CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCceEEEEeccCcccccccchhHHHHHHHhCC
Q psy208 289 GKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEAAFP 368 (443)
Q Consensus 289 ~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ig~~~Q~~~~~l~~~~~~~~~~~~~~~ 368 (443)
++++|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|.+. ..++|++|++. + ...++.+++....+
T Consensus 672 ~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~--~~i~yv~Q~~~--l-~~~Tv~enI~~~~~ 746 (1560)
T PTZ00243 672 PKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAE--RSIAYVPQQAW--I-MNATVRGNILFFDE 746 (1560)
T ss_pred CceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEEC--CeEEEEeCCCc--c-CCCcHHHHHHcCCh
Confidence 3569999999999999999999999999999999999999999999875 36999999863 2 24577777653211
Q ss_pred CCCHHHHHHH---------HhcC--CCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHH
Q psy208 369 GKPQEEYRRQ---------LGGF--GVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGK 436 (443)
Q Consensus 369 ~~~~~~~~~~---------L~~~--gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~ 436 (443)
...+.+... +..+ |+. ....+++.+|||||||||+||||++.+|++|||||||++||+.+.+.+.+
T Consensus 747 -~~~~~~~~~~~~~~l~~~l~~l~~g~~-t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~ 823 (1560)
T PTZ00243 747 -EDAARLADAVRVSQLEADLAQLGGGLE-TEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVE 823 (1560)
T ss_pred -hhHHHHHHHHHHhhhHHHHHHhhccch-HHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHH
Confidence 122222222 3333 443 24567789999999999999999999999999999999999998887765
No 377
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.92 E-value=8.4e-25 Score=254.37 Aligned_cols=149 Identities=22% Similarity=0.217 Sum_probs=119.6
Q ss_pred CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCC----CCCCceEEEcCc----------eEEEEeccCccccccc
Q psy208 290 KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGII----SPTAGTRTVHRN----------LKFGYFSQHHVDQLDM 355 (443)
Q Consensus 290 ~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~----~p~~G~i~~~~~----------~~ig~~~Q~~~~~l~~ 355 (443)
+++|+|+|+.+++|++++|+||||||||||||+|+|.. +|++|+|.+++. ..++|++|+. .+.+
T Consensus 74 ~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d--~~~~ 151 (1394)
T TIGR00956 74 FDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETD--VHFP 151 (1394)
T ss_pred ceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEecccc--ccCC
Confidence 56999999999999999999999999999999999986 579999988641 2489999974 2445
Q ss_pred chhHHHHHHH--h--CC-----CCCHH----H-HHHHHhcCCCChhhhhcc-----CCCCCHHHHHHHHHHHHhccCCCe
Q psy208 356 NLRCVQLLEA--A--FP-----GKPQE----E-YRRQLGGFGVSGDLALQF-----VGSLSGGQKSRVAFARMCMAAPNF 416 (443)
Q Consensus 356 ~~~~~~~~~~--~--~~-----~~~~~----~-~~~~L~~~gl~~~~~~~~-----~~~LSgGekqRl~lA~al~~~p~l 416 (443)
..|+.+.+.- . .+ ....+ . ...+++.+|+. +..+++ +..|||||||||+||++|+.+|++
T Consensus 152 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~v 230 (1394)
T TIGR00956 152 HLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLS-HTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKI 230 (1394)
T ss_pred CCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcc-cccCceeCCCcCCCCCcccchHHHHHHHHHhCCCE
Confidence 5677666532 1 11 11221 2 24578889986 344444 567999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 417 LVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 417 LiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
|+|||||+|||+.+...+.+.|+++
T Consensus 231 lllDEPTsgLD~~~~~~i~~~L~~l 255 (1394)
T TIGR00956 231 QCWDNATRGLDSATALEFIRALKTS 255 (1394)
T ss_pred EEEeCCCCCcCHHHHHHHHHHHHHH
Confidence 9999999999999999999999875
No 378
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.92 E-value=7.1e-25 Score=204.71 Aligned_cols=129 Identities=19% Similarity=0.252 Sum_probs=101.9
Q ss_pred eeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCc---------eEEEcC--------ceEEEEeccCcccccccc
Q psy208 294 TNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAG---------TRTVHR--------NLKFGYFSQHHVDQLDMN 356 (443)
Q Consensus 294 ~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G---------~i~~~~--------~~~ig~~~Q~~~~~l~~~ 356 (443)
++++|++.+| +++|+||||||||||+++|+|+++|..| .+.+.+ ...++|++|++..++.
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~~~-- 90 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGRYS-- 90 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCcee--
Confidence 6789999999 9999999999999999999999877643 232211 2468999998754311
Q ss_pred hhHHHHHHHhCCCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhc----cCCCeEEEeCCCCCCCHHHHH
Q psy208 357 LRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCM----AAPNFLVLDEPTNHLDIETIE 432 (443)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~----~~p~lLiLDEPTn~LD~~s~~ 432 (443)
.....++.++++. .+..++++.+||||||||++||++++ .+|+++||||||++||+.++.
T Consensus 91 ------------~~~~~~~~~~l~~----~~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~~~~ 154 (197)
T cd03278 91 ------------IISQGDVSEIIEA----PGKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVE 154 (197)
T ss_pred ------------EEehhhHHHHHhC----CCccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHHHHH
Confidence 0012345556665 23467889999999999999999986 567999999999999999999
Q ss_pred HHHHHHccc
Q psy208 433 ALGKAINKY 441 (443)
Q Consensus 433 ~l~~~L~~~ 441 (443)
.+.+.|.++
T Consensus 155 ~l~~~l~~~ 163 (197)
T cd03278 155 RFARLLKEF 163 (197)
T ss_pred HHHHHHHHh
Confidence 999998875
No 379
>KOG0059|consensus
Probab=99.91 E-value=2.6e-24 Score=240.87 Aligned_cols=164 Identities=27% Similarity=0.386 Sum_probs=138.1
Q ss_pred CeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc------------eEE
Q psy208 275 PILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN------------LKF 342 (443)
Q Consensus 275 ~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------------~~i 342 (443)
..+.++|+++.|+..+.+++++||.|++||+.|+.|+|||||||++|+|+|..+|++|++.+.+. ..+
T Consensus 563 ~~~~~~~L~k~y~~~~~Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~i 642 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGKDGAVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQL 642 (885)
T ss_pred ceEEEcceeeeecchhhhhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhhhc
Confidence 56899999999964333999999999999999999999999999999999999999999988431 239
Q ss_pred EEeccCcccccccchhHHHHHH--HhCCCC----CHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCe
Q psy208 343 GYFSQHHVDQLDMNLRCVQLLE--AAFPGK----PQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNF 416 (443)
Q Consensus 343 g~~~Q~~~~~l~~~~~~~~~~~--~~~~~~----~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~l 416 (443)
||.||.. .+....|..+.+. ....+. -.+.+...++.+++. +..+++++.+|||+|+|+++|.|++.+|++
T Consensus 643 GyCPQ~d--~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~-~~~~~~~~~ySgG~kRkLs~aialig~p~v 719 (885)
T KOG0059|consen 643 GYCPQFD--ALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLG-PYANKQVRTYSGGNKRRLSFAIALIGDPSV 719 (885)
T ss_pred ccCCchh--hhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCCh-hhhccchhhCCCcchhhHHHHHHHhcCCCE
Confidence 9999973 4566666666553 222222 234567889999997 578899999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 417 LVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 417 LiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
++|||||+|+||.++..+.+++.+.
T Consensus 720 i~LDEPstGmDP~arr~lW~ii~~~ 744 (885)
T KOG0059|consen 720 ILLDEPSTGLDPKARRHLWDIIARL 744 (885)
T ss_pred EEecCCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999998764
No 380
>PLN03140 ABC transporter G family member; Provisional
Probab=99.91 E-value=1.9e-24 Score=251.07 Aligned_cols=151 Identities=24% Similarity=0.271 Sum_probs=120.7
Q ss_pred CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCC---CceEEEcC--------ceEEEEeccCcccccccch
Q psy208 289 GKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPT---AGTRTVHR--------NLKFGYFSQHHVDQLDMNL 357 (443)
Q Consensus 289 ~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~---~G~i~~~~--------~~~ig~~~Q~~~~~l~~~~ 357 (443)
.+.+|+|+|+.|++|++++|+||||||||||||+|+|.++|+ +|+|.+++ ...++|++|+.. +.+..
T Consensus 177 ~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~--~~~~l 254 (1470)
T PLN03140 177 KLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDV--HVGVM 254 (1470)
T ss_pred cceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEeccccc--CCCcC
Confidence 357999999999999999999999999999999999999998 99998864 235899999742 34455
Q ss_pred hHHHHHHH--hCC--C--------CCH----------------------------HHHHHHHhcCCCChh----hhhccC
Q psy208 358 RCVQLLEA--AFP--G--------KPQ----------------------------EEYRRQLGGFGVSGD----LALQFV 393 (443)
Q Consensus 358 ~~~~~~~~--~~~--~--------~~~----------------------------~~~~~~L~~~gl~~~----~~~~~~ 393 (443)
|+.+.+.- ... . ... ..+..+++.+|+... ..+..+
T Consensus 255 TV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~ 334 (1470)
T PLN03140 255 TVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMI 334 (1470)
T ss_pred cHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccc
Confidence 66665531 110 0 000 013457888998531 124567
Q ss_pred CCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 394 GSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 394 ~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
..|||||||||+||++++.+|++|+|||||+|||..+...+.+.|+++
T Consensus 335 rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~l 382 (1470)
T PLN03140 335 RGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQI 382 (1470)
T ss_pred cCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999875
No 381
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.89 E-value=5.8e-23 Score=197.53 Aligned_cols=144 Identities=23% Similarity=0.321 Sum_probs=97.1
Q ss_pred EEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHc----------------CCCCCCc--------
Q psy208 277 LQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMG----------------IISPTAG-------- 332 (443)
Q Consensus 277 l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G----------------~~~p~~G-------- 332 (443)
|+++|.. +|+ +..++.+++ |++++|+||||||||||+++|++ ++.+.+|
T Consensus 4 i~~~nfk-sy~-~~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~v 76 (243)
T cd03272 4 VIIQGFK-SYK-DQTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSAYV 76 (243)
T ss_pred EEEeCcc-Ccc-cCcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceEEE
Confidence 5677763 674 456788876 78999999999999999999984 3444444
Q ss_pred eEEEcCc--------------eEEEEeccCcccccccchhHHHHHHHhCCCCCHHHHHHHHhcCCCCh------------
Q psy208 333 TRTVHRN--------------LKFGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSG------------ 386 (443)
Q Consensus 333 ~i~~~~~--------------~~ig~~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~------------ 386 (443)
++.+... ..++|++++.. +... ..+.+++...+..+|+..
T Consensus 77 ~i~~~~~~~~~~~~~~~~~i~r~ig~~~~~~~--l~~~------------~~t~~ei~~~l~~~gl~~~~~~~~~~qg~i 142 (243)
T cd03272 77 EIIFDNSDNRFPIDKEEVRLRRTIGLKKDEYF--LDKK------------NVTKNDVMNLLESAGFSRSNPYYIVPQGKI 142 (243)
T ss_pred EEEEEcCCCccCCCCCEEEEEEEEECCCCEEE--ECCe------------EcCHHHHHHHHHHcCCCCCCCcEEEEcCch
Confidence 2221110 01333333211 1110 012233333444433321
Q ss_pred -------hhhhccCCCCCHHHHHHHHHHHHhc----cCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 387 -------DLALQFVGSLSGGQKSRVAFARMCM----AAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 387 -------~~~~~~~~~LSgGekqRl~lA~al~----~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
...++++..||||||||++||++++ .+|++|||||||++||+.+++.+.+.|.++
T Consensus 143 ~~l~~l~~~~~~~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~ 208 (243)
T cd03272 143 NSLTNMKQDEQQEMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKEL 208 (243)
T ss_pred HHhhhccccccccccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHH
Confidence 1345788999999999999999996 368999999999999999999999998775
No 382
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.88 E-value=4.2e-21 Score=203.64 Aligned_cols=263 Identities=21% Similarity=0.261 Sum_probs=164.1
Q ss_pred HHhCCCChhhhhccCCCCChHHHH-------------------------------HHHHHHHHHhhhCCCeEEEEecCHH
Q psy208 123 LAGLGFTPEMQKRATKHFSGGWRK-------------------------------MAIIWLENYLQNWPTTLLVVSHDRH 171 (443)
Q Consensus 123 L~~lgl~~~~~~~~~~~LSGGqr~-------------------------------~~i~wL~~~L~~~~~tviiVSHDr~ 171 (443)
|-.+||+-.-++|...+|||||.| +.+.-...-|++.+.|||||+||-+
T Consensus 465 L~~VGL~YLtL~R~a~TLSGGEaQRIRLAtqiGS~LtGVlYVLDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVEHDed 544 (935)
T COG0178 465 LVDVGLGYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEHDED 544 (935)
T ss_pred HHHcCcCcccccccCCCcChhHHHHHHHHHHhcccceeeEEEecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEecCHH
Confidence 445788866789999999999988 1222222335788999999999999
Q ss_pred HHhccCCcEEEEeC-----CeeEEEcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy208 172 FLDSVPTDIFHLHS-----QRIDTYRGNYEAFDKIKTEKLKNQQREIEAQRMHREHVQKFIDTFRYNANRASSVQSKIKQ 246 (443)
Q Consensus 172 fLd~v~~~i~~l~~-----g~i~~~~G~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 246 (443)
-+. .||+|++|-. |+=.+|.|++++.....+ ...- ++
T Consensus 545 ti~-~AD~iIDiGPgAG~~GGeIv~~Gtp~~i~~~~~--------SlTG---------~Y-------------------- 586 (935)
T COG0178 545 TIR-AADHIIDIGPGAGEHGGEIVAEGTPEELLANPE--------SLTG---------QY-------------------- 586 (935)
T ss_pred HHh-hcCEEEeeCCCCCcCCCEEEEccCHHHHHhCCc--------chhh---------Hh--------------------
Confidence 875 4899999953 344568999988743221 0000 00
Q ss_pred HhcCCCCCCCccccccccccCCCCCCC-CCeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHH----
Q psy208 247 LERLPELKPIEKEVEVVLKFPDTELLS-PPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLK---- 321 (443)
Q Consensus 247 l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk---- 321 (443)
|..-.. +..|..++.+ ...|++++.+. .=|+||+.+|+-|-.++|+|-+|||||||++
T Consensus 587 Lsg~~~-----------i~vP~~rr~~~~~~L~l~gA~~------nNLkni~v~iPLg~~t~VTGVSGSGKSTLIn~tL~ 649 (935)
T COG0178 587 LSGKKT-----------IEVPKKRRAPNGKWLELKGARR------NNLKNIDVEIPLGVFTCVTGVSGSGKSTLINDTLV 649 (935)
T ss_pred hcCCcc-----------cCCcccccCCCCCeEEEecccc------cCcccceeecccccEEEEEecCCCCHHHhHHHHHH
Confidence 000001 1111222221 22688888763 1489999999999999999999999999982
Q ss_pred -----HHHcC-CCCCCc-eEEEc-CceEEEEeccCcccc-----------------------------------------
Q psy208 322 -----IIMGI-ISPTAG-TRTVH-RNLKFGYFSQHHVDQ----------------------------------------- 352 (443)
Q Consensus 322 -----~l~G~-~~p~~G-~i~~~-~~~~ig~~~Q~~~~~----------------------------------------- 352 (443)
.|.+. ..|... .|.-. .-.++-+++|.|.-.
T Consensus 650 ~a~~~~l~~~~~~p~~~~~i~G~e~idkvI~IdQsPIGRTpRSNPATYtg~Fd~IR~lFA~tpeAK~rGyk~grFSFNvk 729 (935)
T COG0178 650 PALARHLNGTKEEPGPYKKIEGLEHIDKVIDIDQSPIGRTPRSNPATYTGVFDDIRELFAGTPEAKARGYKPGRFSFNVK 729 (935)
T ss_pred HHHHHHhccCCCCCCCcceeechhhcCeEEEecCCCCCCCCCCCccchhcchHHHHHHHhcChHHHHcCCCcccccccCC
Confidence 22231 112111 11000 000122222222100
Q ss_pred ---------------------------------------cc-----------cchhHHHHHHHhCCCC-CHHHHHHHHhc
Q psy208 353 ---------------------------------------LD-----------MNLRCVQLLEAAFPGK-PQEEYRRQLGG 381 (443)
Q Consensus 353 ---------------------------------------l~-----------~~~~~~~~~~~~~~~~-~~~~~~~~L~~ 381 (443)
+. .++++.+.. ..|... ...+..+.|-.
T Consensus 730 GGRCe~C~GdG~ikIeM~FLpdVyv~CevC~GkRYn~EtLev~ykGK~IadVL~MTveEA~-~FF~~~p~I~rkLqtL~d 808 (935)
T COG0178 730 GGRCEACQGDGVIKIEMHFLPDVYVPCEVCHGKRYNRETLEVKYKGKNIADVLDMTVEEAL-EFFEAIPKIARKLQTLVD 808 (935)
T ss_pred CcCCccccCCceEEEEeccCCCceeeCCCcCCcccccceEEEEECCccHHHHHhccHHHHH-HHHhcchHHHHHHHHHHH
Confidence 00 001111111 011111 12233455677
Q ss_pred CCCChhhhhccCCCCCHHHHHHHHHHHHhccCC---CeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 382 FGVSGDLALQFVGSLSGGQKSRVAFARMCMAAP---NFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 382 ~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p---~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
+|+..-.+-++..+|||||.|||-||.-|.... -++||||||.||-+..++.|.+.|.+.
T Consensus 809 VGLgYi~LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rL 871 (935)
T COG0178 809 VGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRL 871 (935)
T ss_pred cCcceEecCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHHHHHH
Confidence 888776778999999999999999999998877 899999999999999999999988764
No 383
>KOG0054|consensus
Probab=99.88 E-value=1.1e-21 Score=221.72 Aligned_cols=159 Identities=21% Similarity=0.343 Sum_probs=133.5
Q ss_pred CCCeEEEeeeEEEeCC--CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCceEEEEeccCcc
Q psy208 273 SPPILQLSEVNFEYVP--GKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHV 350 (443)
Q Consensus 273 ~~~~l~~~~l~~~y~~--~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ig~~~Q~~~ 350 (443)
+...++++|.++++++ ..+.|+||||+|++|+.+||+|+-|||||+||.+|.|..+..+|.+.+++. ++|++|.+
T Consensus 515 ~~~~i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gs--iaYv~Q~p- 591 (1381)
T KOG0054|consen 515 GENAIEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGS--VAYVPQQP- 591 (1381)
T ss_pred CCceEEEeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCe--EEEecccc-
Confidence 4567999999999864 245999999999999999999999999999999999999999999998764 99999986
Q ss_pred cccccchhHHHHHHHhCCCCCHHHHHHHHhcCCCChhhhh----------ccCCCCCHHHHHHHHHHHHhccCCCeEEEe
Q psy208 351 DQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLAL----------QFVGSLSGGQKSRVAFARMCMAAPNFLVLD 420 (443)
Q Consensus 351 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~----------~~~~~LSgGekqRl~lA~al~~~p~lLiLD 420 (443)
. -.+.|+.+++.-.. ..+++++++.++...+..|..- .+.-+||||||||++||||+.+++++++||
T Consensus 592 W--I~ngTvreNILFG~-~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLD 668 (1381)
T KOG0054|consen 592 W--IQNGTVRENILFGS-PYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLD 668 (1381)
T ss_pred H--hhCCcHHHhhhcCc-cccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEc
Confidence 2 33567777775322 3467888899988888655332 345589999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHH
Q psy208 421 EPTNHLDIETIEALGKA 437 (443)
Q Consensus 421 EPTn~LD~~s~~~l~~~ 437 (443)
.|.+++|...-..|.+-
T Consensus 669 DplSAVDahvg~~if~~ 685 (1381)
T KOG0054|consen 669 DPLSAVDAHVGKHIFEE 685 (1381)
T ss_pred CcchhhhHhhhHHHHHH
Confidence 99999999987777653
No 384
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.87 E-value=5.2e-22 Score=187.55 Aligned_cols=151 Identities=21% Similarity=0.216 Sum_probs=104.6
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEe-CCCEEEEECCCCCcHHHHHHHHHcCC-CCCCceEEEc----------CceEEE
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGAT-LESRICIVGDNGAGKTTLLKIIMGII-SPTAGTRTVH----------RNLKFG 343 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~-~Ge~i~iiG~NGsGKSTLlk~l~G~~-~p~~G~i~~~----------~~~~ig 343 (443)
-|+++|+. +|.+ . .+++|+.. +|++++|+||||||||||+++|++.+ -+..+..... ....++
T Consensus 5 ~i~l~nf~-~y~~-~---~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~~~~~~~~~~~~~~~v~ 79 (213)
T cd03279 5 KLELKNFG-PFRE-E---QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVFAPGEDTAEVS 79 (213)
T ss_pred EEEEECCc-CcCC-c---eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccchhHHHHhcCCCccEEEE
Confidence 37889988 7743 2 55666544 58899999999999999999999643 3333333211 123577
Q ss_pred EeccCcccccccchhHHHHHHHhCCCCCHHHHHHH--HhcCCCChhhhhccCCCCCHHHHHHHHHHHHhcc---------
Q psy208 344 YFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQ--LGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMA--------- 412 (443)
Q Consensus 344 ~~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~--------- 412 (443)
+.+|+...... ... ..+.+.+...+. +...++ ....++++..||+||+||++||++++.
T Consensus 80 ~~f~~~~~~~~-~~r--------~~gl~~~~~~~~~~l~~g~l-~~~l~~~~~~lS~G~~~r~~la~al~~~p~~~~~~~ 149 (213)
T cd03279 80 FTFQLGGKKYR-VER--------SRGLDYDQFTRIVLLPQGEF-DRFLARPVSTLSGGETFLASLSLALALSEVLQNRGG 149 (213)
T ss_pred EEEEECCeEEE-EEE--------ecCCCHHHHHHhhhhhhcch-HHHhcCCccccCHHHHHHHHHHHHHHhHHHhhhccC
Confidence 77776532111 111 112333333322 233333 256678999999999999999999974
Q ss_pred -CCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 413 -APNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 413 -~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
+|++|||||||++||+.+.+.+.+.|.++
T Consensus 150 ~~~~~lllDEp~~~lD~~~~~~~~~~l~~~ 179 (213)
T cd03279 150 ARLEALFIDEGFGTLDPEALEAVATALELI 179 (213)
T ss_pred CCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 57899999999999999999999988765
No 385
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.87 E-value=3.2e-22 Score=193.63 Aligned_cols=158 Identities=18% Similarity=0.233 Sum_probs=109.8
Q ss_pred EEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCC-ceEEEcC--------------ceE
Q psy208 277 LQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTA-GTRTVHR--------------NLK 341 (443)
Q Consensus 277 l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~-G~i~~~~--------------~~~ 341 (443)
|.++|. ++|. ...++.++ ...+++|+||||||||||+++|++++.|.. |++.... ...
T Consensus 6 ~~~~~f-~~~~-~~~~~~~~-----~~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~ 78 (251)
T cd03273 6 IILDGF-KSYA-TRTVISGF-----DPQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKAS 78 (251)
T ss_pred EEEeCc-cccC-cCEeeccC-----CCCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEE
Confidence 556666 4563 22222222 256999999999999999999999998863 4544311 236
Q ss_pred EEEeccCccc-------ccccchhHHHHHH----H-h-CC--CCCHHHHHHHHhcCCCCh-------------------h
Q psy208 342 FGYFSQHHVD-------QLDMNLRCVQLLE----A-A-FP--GKPQEEYRRQLGGFGVSG-------------------D 387 (443)
Q Consensus 342 ig~~~Q~~~~-------~l~~~~~~~~~~~----~-~-~~--~~~~~~~~~~L~~~gl~~-------------------~ 387 (443)
+++++|++.. .+++..++...+. . . .. .....++..+|..+|+.. +
T Consensus 79 v~~~fq~~~~~~~~~~~~~~~~ltV~r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~ 158 (251)
T cd03273 79 VTIVFDNSDKSQSPIGFENYPEITVTRQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGG 158 (251)
T ss_pred EEEEEEcCCcccCcccccCCceEEEEEEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHH
Confidence 8888887421 1111222111110 0 0 11 123467888999999852 3
Q ss_pred hhhccCCCCCHHHHHHHHHHHHhc----cCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 388 LALQFVGSLSGGQKSRVAFARMCM----AAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 388 ~~~~~~~~LSgGekqRl~lA~al~----~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
..++++.+||+|||||++||++++ .+|+++||||||++||+.+++.+.+.|.++
T Consensus 159 ~~~~~~~~lS~G~~qr~~la~al~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~ 216 (251)
T cd03273 159 VWKESLTELSGGQRSLVALSLILALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTH 216 (251)
T ss_pred hhcccccccCHHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHH
Confidence 456789999999999999999997 588999999999999999999999998765
No 386
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.87 E-value=2.5e-20 Score=215.87 Aligned_cols=246 Identities=17% Similarity=0.193 Sum_probs=159.2
Q ss_pred HHhCCCChhhhhccCCCCChHHHH-------------------------------HHHHHHHHHhhhCCCeEEEEecCHH
Q psy208 123 LAGLGFTPEMQKRATKHFSGGWRK-------------------------------MAIIWLENYLQNWPTTLLVVSHDRH 171 (443)
Q Consensus 123 L~~lgl~~~~~~~~~~~LSGGqr~-------------------------------~~i~wL~~~L~~~~~tviiVSHDr~ 171 (443)
|..+||...-++|+..+|||||-| +.+.-..+-|++.+.|||||+||.+
T Consensus 1371 l~~vGL~YLtL~R~~~TLSGGE~QRirLa~~lgs~L~gvlYVLDEPSiGLHp~D~~~Li~~L~~Lrd~GNTvivVEHd~~ 1450 (1809)
T PRK00635 1371 IDKVGLSYITLGQEQDTLSDGEHYRLHLAKKISSNLTDIIYLLEDPLSGLHPQDAPTLLQLIKELVTNNNTVIATDRSGS 1450 (1809)
T ss_pred HHhCCCCcccccCCCCCCcchHHHHHHHHHHhcCCCceeEEEeCCCCcCCChhHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 445899877789999999999988 2333334446778999999999999
Q ss_pred HHhccCCcEEEEeC-----CeeEEEcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy208 172 FLDSVPTDIFHLHS-----QRIDTYRGNYEAFDKIKTEKLKNQQREIEAQRMHREHVQKFIDTFRYNANRASSVQSKIKQ 246 (443)
Q Consensus 172 fLd~v~~~i~~l~~-----g~i~~~~G~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 246 (443)
.+.. ||+|++|=+ |+-.+|.|.|.+... . . . .
T Consensus 1451 ~i~~-AD~iidiGPgAG~~GG~iv~~G~~~~l~~--~---------~-----------------~--~------------ 1487 (1809)
T PRK00635 1451 LAEH-ADHLIHLGPGSGPQGGYLLSTSALKQSQP--D---------L-----------------H--N------------ 1487 (1809)
T ss_pred HHHh-CCEEEEeCCCccCCCCEEEecCCHHHHhh--h---------c-----------------c--c------------
Confidence 9865 899999952 344568999876520 0 0 0 0
Q ss_pred HhcCCCCCCCccccccccccCCCCCCCCCeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHH--
Q psy208 247 LERLPELKPIEKEVEVVLKFPDTELLSPPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIM-- 324 (443)
Q Consensus 247 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~-- 324 (443)
.. .. .. .+.|++ +++. .=|+|++++|+-|-.++|+|.+|||||||++-+.
T Consensus 1488 -------~~--~~----~~--------~~~l~l-~a~~------nNLk~v~v~iPlg~l~~vTGVSGSGKStLi~~~l~~ 1539 (1809)
T PRK00635 1488 -------TR--SS----EE--------TPTLSV-SLSI------HTIQNLNVSAPLHSLVAISGVSGSGKTSLLLEGFYK 1539 (1809)
T ss_pred -------cc--cc----cc--------CcEEEE-eccc------ccCCcceeeccCCcEEEEeCCCCCcHHHHHHHHHHH
Confidence 00 00 00 013666 5432 2489999999999999999999999999997443
Q ss_pred --------cCCCCCCceEEEcC-------------------------------------------c--------------
Q psy208 325 --------GIISPTAGTRTVHR-------------------------------------------N-------------- 339 (443)
Q Consensus 325 --------G~~~p~~G~i~~~~-------------------------------------------~-------------- 339 (443)
|.... +--|.++. |
T Consensus 1540 ~l~~~l~~g~~~~-~~vi~vdQspIgrt~RS~paTY~g~fd~IR~lFA~~~~ak~rg~~~~~FSfN~~~GrC~~C~G~G~ 1618 (1809)
T PRK00635 1540 QACALIEKGPSVF-SEIIFLDSHPQISSQRSDISTYFDIAPSLRNFYASLTQAKALNISASMFSTNTKQGQCSDCWGLGY 1618 (1809)
T ss_pred HHHHHhccccccc-CcEEEEeCCCCCCCCCCchhhhhhhHHHHHHHHhcCHHHHHcCCCcccccccCCCCCCCCCccCce
Confidence 22110 00111110 0
Q ss_pred --eEEEEeccCcc-------cccc----------------cchhHHHHHHHhCCCC-CHHHHHHHHhcCCCChhhhhccC
Q psy208 340 --LKFGYFSQHHV-------DQLD----------------MNLRCVQLLEAAFPGK-PQEEYRRQLGGFGVSGDLALQFV 393 (443)
Q Consensus 340 --~~ig~~~Q~~~-------~~l~----------------~~~~~~~~~~~~~~~~-~~~~~~~~L~~~gl~~~~~~~~~ 393 (443)
..+.|++.-.. ..+. .++++-+.+ ..|... .-....+.|..+|+..-.+.++.
T Consensus 1619 i~i~m~fl~dv~~~C~~C~G~R~~~e~L~v~~~gk~I~dvL~mtv~ea~-~~F~~~~~i~~~L~~L~~vGLgYl~LGq~~ 1697 (1809)
T PRK00635 1619 QWIDRAFYALEKRPCPTCSGFRIQPLAQEVVYEGKHFGQLLQTPIEEVA-ETFPFLKKIQKPLQALIDNGLGYLPLGQNL 1697 (1809)
T ss_pred EEEecccCCCcccCCCCCCCcCCCHHHHhheeCCCCHHHHhcCCHHHHH-HHhhccHHHHHHHHHHHHcCCCeeeCCCcC
Confidence 00111111000 0000 001111111 112111 12334567888999777778999
Q ss_pred CCCCHHHHHHHHHHHHhccC---CCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 394 GSLSGGQKSRVAFARMCMAA---PNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 394 ~~LSgGekqRl~lA~al~~~---p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
.+|||||.||+-||.-|..+ +.++||||||+||++...+.|.+.|.+.
T Consensus 1698 ~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d~~~Ll~~l~~L 1748 (1809)
T PRK00635 1698 SSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALLVQLRTL 1748 (1809)
T ss_pred CccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999875 7899999999999999999999997654
No 387
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.85 E-value=2.8e-21 Score=187.42 Aligned_cols=151 Identities=21% Similarity=0.241 Sum_probs=102.0
Q ss_pred ceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHH-----c---C--CCCCCceEEEcC--ceEEEEeccCcccc-----c
Q psy208 291 PILTNVCLGATLESRICIVGDNGAGKTTLLKIIM-----G---I--ISPTAGTRTVHR--NLKFGYFSQHHVDQ-----L 353 (443)
Q Consensus 291 ~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~-----G---~--~~p~~G~i~~~~--~~~ig~~~Q~~~~~-----l 353 (443)
.-|+|+|++|+.|..++|+|++|||||||++.+. . . ..|..+....+. -..+-+++|.|... .
T Consensus 9 ~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~~ 88 (261)
T cd03271 9 NNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSNP 88 (261)
T ss_pred hcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCcH
Confidence 3689999999999999999999999999998662 1 1 113322221110 11234455543210 0
Q ss_pred ---------------------------------------ccchhHHHHHHHhCCCCCHHHHHHHHhcCCCChhhhhccCC
Q psy208 354 ---------------------------------------DMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVG 394 (443)
Q Consensus 354 ---------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~~~ 394 (443)
....++.+.+.............+.|..+|+.....++++.
T Consensus 89 ~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~~~~~~~~~L~~vgL~~l~l~~~~~ 168 (261)
T cd03271 89 ATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIPKIARKLQTLCDVGLGYIKLGQPAT 168 (261)
T ss_pred HHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhhhHHHHHHHHHHcCCchhhhcCccc
Confidence 00111111111000000123456678889996545789999
Q ss_pred CCCHHHHHHHHHHHHhccC---CCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 395 SLSGGQKSRVAFARMCMAA---PNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 395 ~LSgGekqRl~lA~al~~~---p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
+|||||+||++||++|+.+ |+++||||||++||+..++.+.+.|.++
T Consensus 169 ~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l 218 (261)
T cd03271 169 TLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRL 218 (261)
T ss_pred cCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999996 7999999999999999999999998765
No 388
>KOG0060|consensus
Probab=99.85 E-value=1.1e-20 Score=194.07 Aligned_cols=163 Identities=24% Similarity=0.339 Sum_probs=127.3
Q ss_pred CCeEEEeeeEEEeCC-CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCce---EEEEeccCc
Q psy208 274 PPILQLSEVNFEYVP-GKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNL---KFGYFSQHH 349 (443)
Q Consensus 274 ~~~l~~~~l~~~y~~-~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~---~ig~~~Q~~ 349 (443)
..+|++++|++.=|+ +..+++|+||+|..|+-+.|+||||||||+|+|+|+|+.+..+|++...... .+-|+||.|
T Consensus 431 Dn~i~~e~v~l~tPt~g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~~~lfflPQrP 510 (659)
T KOG0060|consen 431 DNAIEFEEVSLSTPTNGDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGPKDLFFLPQRP 510 (659)
T ss_pred cceEEeeeeeecCCCCCceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCCCCceEEecCCC
Confidence 468999999999776 5668889999999999999999999999999999999999999999875433 388999988
Q ss_pred ccccccchhHHHHHHH-------hCCCCCHHHHHHHHhcCCCChhhhh-----------ccCCCCCHHHHHHHHHHHHhc
Q psy208 350 VDQLDMNLRCVQLLEA-------AFPGKPQEEYRRQLGGFGVSGDLAL-----------QFVGSLSGGQKSRVAFARMCM 411 (443)
Q Consensus 350 ~~~l~~~~~~~~~~~~-------~~~~~~~~~~~~~L~~~gl~~~~~~-----------~~~~~LSgGekqRl~lA~al~ 411 (443)
...+ .|..+.+.. .....+++++...|+.+++.. .+. .=...||+||+||+++||.+.
T Consensus 511 Ymt~---GTLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~h-l~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLfy 586 (659)
T KOG0060|consen 511 YMTL---GTLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGH-LLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLFY 586 (659)
T ss_pred Cccc---cchhheeeccCccccccccCCCHHHHHHHHHHhhhhh-HHHHhCCCCchhhccHHhhcCHHHHHHHHHHHHHh
Confidence 5221 133333211 011234566777776665531 111 113479999999999999999
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHcc
Q psy208 412 AAPNFLVLDEPTNHLDIETIEALGKAINK 440 (443)
Q Consensus 412 ~~p~lLiLDEPTn~LD~~s~~~l~~~L~~ 440 (443)
++|++-||||-|+++|.+...++.+.+++
T Consensus 587 ~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~ 615 (659)
T KOG0060|consen 587 HKPKFAILDECTSAVTEDVEGALYRKCRE 615 (659)
T ss_pred cCCceEEeechhhhccHHHHHHHHHHHHH
Confidence 99999999999999999999999888765
No 389
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.85 E-value=3.6e-21 Score=180.72 Aligned_cols=131 Identities=27% Similarity=0.335 Sum_probs=95.9
Q ss_pred eeEEEeCCCEEEEECCCCCcHHHHHHHHH----cCCCCCCceEEEc--------CceEEEEeccCc-cccccc--chhHH
Q psy208 296 VCLGATLESRICIVGDNGAGKTTLLKIIM----GIISPTAGTRTVH--------RNLKFGYFSQHH-VDQLDM--NLRCV 360 (443)
Q Consensus 296 vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~----G~~~p~~G~i~~~--------~~~~ig~~~Q~~-~~~l~~--~~~~~ 360 (443)
.++++.+| +++|+||||||||||+++|. |..+|+.|.+... ....+++.+|++ ...+.. ..+++
T Consensus 16 ~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~~~~ 94 (204)
T cd03240 16 SEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSLAIL 94 (204)
T ss_pred eEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEhhHh
Confidence 34566677 99999999999999999995 9999988754311 134688888875 222221 12444
Q ss_pred HHHHHhCCCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHH------HHHHHHhccCCCeEEEeCCCCCCCHHHHH-H
Q psy208 361 QLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSR------VAFARMCMAAPNFLVLDEPTNHLDIETIE-A 433 (443)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqR------l~lA~al~~~p~lLiLDEPTn~LD~~s~~-~ 433 (443)
+.+... ...++... .++++..||+||+|| ++||++++.+|+++||||||++||+.+++ .
T Consensus 95 ~~~~~~----~~~~~~~~----------~~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~~~~~~ 160 (204)
T cd03240 95 ENVIFC----HQGESNWP----------LLDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEES 160 (204)
T ss_pred hceeee----chHHHHHH----------HhcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHHHHHHH
Confidence 433211 12222222 267889999999996 78999999999999999999999999999 9
Q ss_pred HHHHHccc
Q psy208 434 LGKAINKY 441 (443)
Q Consensus 434 l~~~L~~~ 441 (443)
+.+.|.++
T Consensus 161 l~~~l~~~ 168 (204)
T cd03240 161 LAEIIEER 168 (204)
T ss_pred HHHHHHHH
Confidence 99988764
No 390
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.84 E-value=1.4e-22 Score=191.34 Aligned_cols=153 Identities=21% Similarity=0.278 Sum_probs=99.9
Q ss_pred EEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCceEEEEeccCcccccccc
Q psy208 277 LQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMN 356 (443)
Q Consensus 277 l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ig~~~Q~~~~~l~~~ 356 (443)
|+++|.. +|+ +..++++++| ++++|+||||||||||+++|+-..-.+.... ...+++|+++.... .+.
T Consensus 6 l~l~nfk-~~~-~~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~~~~G~~~~~~---~~~~i~~~~~~~~~--~~~ 73 (212)
T cd03274 6 LVLENFK-SYA-GEQVIGPFHK-----SFSAIVGPNGSGKSNVIDSMLFVFGFRASKM---RQKKLSDLIHNSAG--HPN 73 (212)
T ss_pred EEEECcc-cCC-CCeeeccCCC-----CeEEEECCCCCCHHHHHHHHHHHhccCHHHh---hhhhHHHHhcCCCC--CCC
Confidence 7788886 785 5679999987 7999999999999999999983211110000 11234555544211 110
Q ss_pred hhH------------HHHHHH-hCCCCCHH---HHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhcc----CCCe
Q psy208 357 LRC------------VQLLEA-AFPGKPQE---EYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMA----APNF 416 (443)
Q Consensus 357 ~~~------------~~~~~~-~~~~~~~~---~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~----~p~l 416 (443)
.+. ...+.. ........ ....++..+++. +..++++..||+|||||++||++++. +|++
T Consensus 74 ~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~-~~~~~~~~~lS~G~~~r~~la~al~~~~~~~p~i 152 (212)
T cd03274 74 LDSCSVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMP-KKSWKNISNLSGGEKTLSSLALVFALHHYKPTPL 152 (212)
T ss_pred CceEEEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeeccc-cccccchhhcCHHHHHHHHHHHHHHhcccCCCCE
Confidence 000 001100 00000000 013344566664 45677899999999999999999963 5899
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHcccc
Q psy208 417 LVLDEPTNHLDIETIEALGKAINKYT 442 (443)
Q Consensus 417 LiLDEPTn~LD~~s~~~l~~~L~~~~ 442 (443)
+||||||++||+.++..+.+.|.++.
T Consensus 153 lilDEPt~gLD~~~~~~l~~~l~~~~ 178 (212)
T cd03274 153 YVMDEIDAALDFRNVSIVANYIKERT 178 (212)
T ss_pred EEEcCCCcCCCHHHHHHHHHHHHHHc
Confidence 99999999999999999999998764
No 391
>KOG0066|consensus
Probab=99.84 E-value=4.6e-21 Score=190.77 Aligned_cols=160 Identities=29% Similarity=0.420 Sum_probs=121.0
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCceEEEEeccCccccccc
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDM 355 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ig~~~Q~~~~~l~~ 355 (443)
-|.++|.+++-. ++.+|-+.||.|-.|-++|||||||-||||||+.|+.--- .+.+++.+-|+.|+....-..
T Consensus 264 DIKiEnF~ISA~-Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~Ral------aIPpnIDvLlCEQEvvad~t~ 336 (807)
T KOG0066|consen 264 DIKIENFDISAQ-GKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARAL------AIPPNIDVLLCEQEVVADSTS 336 (807)
T ss_pred cceeeeeeeecc-cceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhc------cCCCCCceEeeeeeeeecCcH
Confidence 388999999874 5789999999999999999999999999999999986321 112233334444432110000
Q ss_pred -----------------------------chhH-------HHHHHHhCCCCCHHHHHHHHhcCCCChhhhhccCCCCCHH
Q psy208 356 -----------------------------NLRC-------VQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGG 399 (443)
Q Consensus 356 -----------------------------~~~~-------~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgG 399 (443)
+.++ ++.+...-....+.+++++|+.+||+.+..++|...+|||
T Consensus 337 Ai~tvl~aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELraiGA~sAEarARRILAGLGFskEMQ~rPt~kFSGG 416 (807)
T KOG0066|consen 337 AIDTVLKADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAIGADSAEARARRILAGLGFSKEMQERPTTKFSGG 416 (807)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhccccchhHHHHHHhhcCCChhHhcCCccccCCc
Confidence 0011 1111111112235568899999999999999999999999
Q ss_pred HHHHHHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHcccc
Q psy208 400 QKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKYT 442 (443)
Q Consensus 400 ekqRl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~~ 442 (443)
.|.||+|||||...|-+|.|||||||||...+-||-+.|..|+
T Consensus 417 WRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWk 459 (807)
T KOG0066|consen 417 WRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWK 459 (807)
T ss_pred eeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhhh
Confidence 9999999999999999999999999999999999999998774
No 392
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.83 E-value=5.9e-20 Score=181.37 Aligned_cols=157 Identities=22% Similarity=0.251 Sum_probs=116.5
Q ss_pred CeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCceEEEEeccCcccccc
Q psy208 275 PILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLD 354 (443)
Q Consensus 275 ~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ig~~~Q~~~~~l~ 354 (443)
.-|+++|+.|.|.+...-+.+||++|++||++-|+|.||||||||+++|+|+++|++|+|.++++.. +.+ +++
T Consensus 321 ~~lelrnvrfay~~~~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV----~~e---~le 393 (546)
T COG4615 321 KTLELRNVRFAYQDNAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPV----SAE---QLE 393 (546)
T ss_pred cceeeeeeeeccCcccceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccC----CCC---CHH
Confidence 3599999999997544667899999999999999999999999999999999999999999876431 111 111
Q ss_pred cchhHHHH----------HHHhCCCCCHHHHHHHHhcCCCChh--hhh--ccCCCCCHHHHHHHHHHHHhccCCCeEEEe
Q psy208 355 MNLRCVQL----------LEAAFPGKPQEEYRRQLGGFGVSGD--LAL--QFVGSLSGGQKSRVAFARMCMAAPNFLVLD 420 (443)
Q Consensus 355 ~~~~~~~~----------~~~~~~~~~~~~~~~~L~~~gl~~~--~~~--~~~~~LSgGekqRl~lA~al~~~p~lLiLD 420 (443)
.....+.. +...-...+++.+..+|.++.+... ..+ -..-.||.|||+|+++..|++.+.+|++||
T Consensus 394 dYR~LfSavFsDyhLF~~ll~~e~~as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~Ilv~D 473 (546)
T COG4615 394 DYRKLFSAVFSDYHLFDQLLGPEGKASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLD 473 (546)
T ss_pred HHHHHHHHHhhhHhhhHhhhCCccCCChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhCCeEEee
Confidence 11111111 1111111345667777776654211 111 234579999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHH
Q psy208 421 EPTNHLDIETIEALGKAI 438 (443)
Q Consensus 421 EPTn~LD~~s~~~l~~~L 438 (443)
|=-+.-||.-+.++.+.+
T Consensus 474 EWAADQDPaFRR~FY~~l 491 (546)
T COG4615 474 EWAADQDPAFRREFYQVL 491 (546)
T ss_pred hhhccCChHHHHHHHHHH
Confidence 999999999999887655
No 393
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.83 E-value=1.2e-20 Score=182.20 Aligned_cols=157 Identities=20% Similarity=0.265 Sum_probs=101.6
Q ss_pred EEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcC------------------
Q psy208 277 LQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR------------------ 338 (443)
Q Consensus 277 l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~------------------ 338 (443)
|+++|. ++|.+ ... |...++ +++|+|||||||||||.+|++.+.+..|.+....
T Consensus 4 i~l~nf-~~~~~-~~~-----~~~~~~-~~~i~G~NGsGKStll~ai~~~l~~~~~~~r~~~~~~~i~~~~~~~~~~~~~ 75 (247)
T cd03275 4 LELENF-KSYKG-RHV-----IGPFDR-FTCIIGPNGSGKSNLMDAISFVLGEKSSHLRSKNLKDLIYRARVGKPDSNSA 75 (247)
T ss_pred EEEECc-cccCC-Cee-----ecCCCC-eEEEECCCCCCHHHHHHHHHHHhCCCcccccccchhhhcccCccccCCCceE
Confidence 677776 46642 222 222333 8999999999999999999999987766653211
Q ss_pred ceEEEEeccCcccccccchhHHHHHHH-h--CCCCCHHHHHHHHhcCCCChh---------------------hhhccCC
Q psy208 339 NLKFGYFSQHHVDQLDMNLRCVQLLEA-A--FPGKPQEEYRRQLGGFGVSGD---------------------LALQFVG 394 (443)
Q Consensus 339 ~~~ig~~~Q~~~~~l~~~~~~~~~~~~-~--~~~~~~~~~~~~L~~~gl~~~---------------------~~~~~~~ 394 (443)
...+.|..+++..... .......... . .......++.+++..+|+..+ ..++++.
T Consensus 76 ~v~~~f~~~~~~~~~~-~~~~~~~~~~~~ingk~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~ 154 (247)
T cd03275 76 YVTAVYEDDDGEEKTF-RRIITGGSSSYRINGKVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMD 154 (247)
T ss_pred EEEEEEEcCCCcEEEE-EEEEECCceEEEECCEEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHH
Confidence 1223343333211100 0000000000 0 011235566777777777421 2234568
Q ss_pred CCCHHHHHHHHHHHHhcc----CCCeEEEeCCCCCCCHHHHHHHHHHHcccc
Q psy208 395 SLSGGQKSRVAFARMCMA----APNFLVLDEPTNHLDIETIEALGKAINKYT 442 (443)
Q Consensus 395 ~LSgGekqRl~lA~al~~----~p~lLiLDEPTn~LD~~s~~~l~~~L~~~~ 442 (443)
.||+|||||++||++++. +|+++||||||++||+.++..+.+.|.++.
T Consensus 155 ~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~ 206 (247)
T cd03275 155 NLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQA 206 (247)
T ss_pred HcCHHHHHHHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHHHHHHHhc
Confidence 999999999999999986 489999999999999999999999988763
No 394
>KOG0064|consensus
Probab=99.82 E-value=3.1e-20 Score=188.71 Aligned_cols=163 Identities=21% Similarity=0.270 Sum_probs=129.0
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCceEEEEeccCccccc--
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQL-- 353 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ig~~~Q~~~~~l-- 353 (443)
-|.++|+-+--+.+..++..++|.|.+|-.+.|+||||||||+|+|+|.|+.|...|.....+..++-|+||.|.-..
T Consensus 481 gI~lenIpvItP~~~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P~~~~mFYIPQRPYms~gt 560 (728)
T KOG0064|consen 481 GIILENIPVITPAGDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIPRPNNIFYIPQRPYMSGGT 560 (728)
T ss_pred ceEEecCceeccCcceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCeeecCCCcceEeccCCCccCcCc
Confidence 488999988877777899999999999999999999999999999999999999999988887778999999885221
Q ss_pred -----ccchhHHHHHHHhCCCCCHHHHHHHHhcCCCChhhhhcc---------CCCCCHHHHHHHHHHHHhccCCCeEEE
Q psy208 354 -----DMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQF---------VGSLSGGQKSRVAFARMCMAAPNFLVL 419 (443)
Q Consensus 354 -----~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~---------~~~LSgGekqRl~lA~al~~~p~lLiL 419 (443)
-...+..+... .+..+++...+|..+.+. ..+.+- -..||||||||+++||++.++|..-+|
T Consensus 561 lRDQIIYPdS~e~~~~---kg~~d~dL~~iL~~v~L~-~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~yHrPkyalL 636 (728)
T KOG0064|consen 561 LRDQIIYPDSSEQMKR---KGYTDQDLEAILDIVHLE-HILQREGGWDAVRDWKDVLSGGEKQRMGMARMFYHRPKYALL 636 (728)
T ss_pred ccceeecCCcHHHHHh---cCCCHHHHHHHHHHhhHH-HHHHhccChhhhccHHhhccchHHHHHHHHHHHhcCcchhhh
Confidence 11112222221 234566777776655542 111111 136999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHcccc
Q psy208 420 DEPTNHLDIETIEALGKAINKYT 442 (443)
Q Consensus 420 DEPTn~LD~~s~~~l~~~L~~~~ 442 (443)
||-||+..++....+.++.+++.
T Consensus 637 DEcTsAvsidvE~~i~~~ak~~g 659 (728)
T KOG0064|consen 637 DECTSAVSIDVEGKIFQAAKDAG 659 (728)
T ss_pred hhhhcccccchHHHHHHHHHhcC
Confidence 99999999999999999988763
No 395
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.82 E-value=5.9e-20 Score=171.66 Aligned_cols=134 Identities=22% Similarity=0.214 Sum_probs=93.8
Q ss_pred eeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCC-----ce-----EEEc-CceEEEEeccCcccccccchhHH
Q psy208 292 ILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTA-----GT-----RTVH-RNLKFGYFSQHHVDQLDMNLRCV 360 (443)
Q Consensus 292 il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~-----G~-----i~~~-~~~~ig~~~Q~~~~~l~~~~~~~ 360 (443)
.++++++++.+| +.+|+||||||||||+..|.-.+.... |. +..+ ....+.+.+++.. +...
T Consensus 11 ~~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~~~~~r~~~~~~~i~~~~~~~~i~~~~~~~~--~~~~---- 83 (198)
T cd03276 11 CHRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKASDTNRGSSLKDLIKDGESSAKITVTLKNQG--LDAN---- 83 (198)
T ss_pred ceeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCcccccccccHHHHhhCCCCeEEEEEEEEcCC--ccCC----
Confidence 346677787776 779999999999999999975433221 11 0000 1234556665532 1110
Q ss_pred HHHHHhCCCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHh----ccCCCeEEEeCCCCCCCHHHHHHHHH
Q psy208 361 QLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMC----MAAPNFLVLDEPTNHLDIETIEALGK 436 (443)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al----~~~p~lLiLDEPTn~LD~~s~~~l~~ 436 (443)
.........+.+++.. .+..++++.+||+|||||++||+++ +.+|+++||||||++||+.++..+.+
T Consensus 84 -----~~~~~~~~~~~~~l~~----~~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~~~ 154 (198)
T cd03276 84 -----PLCVLSQDMARSFLTS----NKAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKISTD 154 (198)
T ss_pred -----cCCHHHHHHHHHHhcc----ccccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHHHHH
Confidence 0111123455666665 3456789999999999999999999 68999999999999999999999999
Q ss_pred HHccc
Q psy208 437 AINKY 441 (443)
Q Consensus 437 ~L~~~ 441 (443)
.|.++
T Consensus 155 ~l~~~ 159 (198)
T cd03276 155 LLVKE 159 (198)
T ss_pred HHHHH
Confidence 88664
No 396
>KOG2355|consensus
Probab=99.81 E-value=2.4e-19 Score=163.52 Aligned_cols=163 Identities=25% Similarity=0.326 Sum_probs=120.4
Q ss_pred CCeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCce-----------EE
Q psy208 274 PPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNL-----------KF 342 (443)
Q Consensus 274 ~~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~-----------~i 342 (443)
.-.|+++++.|+|+...|++-|+|++++.|++..++|.||||||||||+|+|-.-.-.|.|.+.+.. ..
T Consensus 11 ~~aievsgl~f~y~~~dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~~Sgdl 90 (291)
T KOG2355|consen 11 DFAIEVSGLQFKYKVSDPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLESSGDL 90 (291)
T ss_pred cceEEEeccEEecccCCceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCccccccccccCce
Confidence 3469999999999877899999999999999999999999999999999999887777887764321 23
Q ss_pred EEeccCcc--------cccccchhHHHHHHHhCCCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCC
Q psy208 343 GYFSQHHV--------DQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAP 414 (443)
Q Consensus 343 g~~~Q~~~--------~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p 414 (443)
.|+--+-. -.+..+.++...+... .+...++-..++..+.++ ..-+.+.+|-|||+||.||.-|+.+=
T Consensus 91 ~YLGgeW~~~~~~agevplq~D~sae~mifgV-~g~dp~Rre~LI~iLDId---l~WRmHkvSDGqrRRVQicMGLL~Pf 166 (291)
T KOG2355|consen 91 SYLGGEWSKTVGIAGEVPLQGDISAEHMIFGV-GGDDPERREKLIDILDID---LRWRMHKVSDGQRRRVQICMGLLKPF 166 (291)
T ss_pred eEecccccccccccccccccccccHHHHHhhc-cCCChhHhhhhhhheecc---ceEEEeeccccchhhhHHHHhcccce
Confidence 33332210 0011223333333221 222233334444444442 34567889999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHcc
Q psy208 415 NFLVLDEPTNHLDIETIEALGKAINK 440 (443)
Q Consensus 415 ~lLiLDEPTn~LD~~s~~~l~~~L~~ 440 (443)
++|+|||.|-.||.-++..|.+.|+.
T Consensus 167 kVLLLDEVTVDLDVlARadLLeFlke 192 (291)
T KOG2355|consen 167 KVLLLDEVTVDLDVLARADLLEFLKE 192 (291)
T ss_pred eEEEeeeeEeehHHHHHHHHHHHHHH
Confidence 99999999999999999999998864
No 397
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.79 E-value=3e-20 Score=165.48 Aligned_cols=157 Identities=27% Similarity=0.403 Sum_probs=118.2
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCce-----------EEEE
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNL-----------KFGY 344 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~-----------~ig~ 344 (443)
++.++||+.+- -|-.+|.++..|+++-+||||||||||||-.++|++ |-+|+|.+.+.. .-+|
T Consensus 3 l~qln~v~~~t-----RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~-~~sGsi~~~G~~l~~~~~~eLArhRAY 76 (248)
T COG4138 3 LMQLNDVAEST-----RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAWSATELARHRAY 76 (248)
T ss_pred eeeeccccccc-----cccccccccccceEEEEECCCCccHHHHHHHHhCCC-CCCceEEECCcchhHHhHhHHHHHHHH
Confidence 57888888642 466789999999999999999999999999999986 678999886421 2357
Q ss_pred eccCcccccccchhHHHHHHHhCCCCC-HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhcc-----CC--Ce
Q psy208 345 FSQHHVDQLDMNLRCVQLLEAAFPGKP-QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMA-----AP--NF 416 (443)
Q Consensus 345 ~~Q~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~-----~p--~l 416 (443)
+.|.... .....++.++.-..|... ...+..+...+++. +...+.++.|||||-|||-||..++. || ++
T Consensus 77 LsQqq~p--~f~mpV~~YL~L~qP~~~~a~~i~~i~~~L~l~-DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~L 153 (248)
T COG4138 77 LSQQQTP--PFAMPVWHYLTLHQPDKTRTELLNDVAGALALD-DKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQL 153 (248)
T ss_pred HhhccCC--cchhhhhhhhhhcCchHHHHHHHHHHHhhhccc-chhhhhhhhcCcccceeeEEeEEEEEecCCCCcccee
Confidence 7765422 222344444443333322 23455566677775 67889999999999999999988765 44 69
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 417 LVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 417 LiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
||||||.|+||+.....|-..|.++
T Consensus 154 LllDEP~~~LDvAQ~~aLdrll~~~ 178 (248)
T COG4138 154 LLLDEPMNSLDVAQQSALDRLLSAL 178 (248)
T ss_pred EEecCCCcchhHHHHHHHHHHHHHH
Confidence 9999999999999988888777655
No 398
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.79 E-value=2.7e-19 Score=163.69 Aligned_cols=169 Identities=21% Similarity=0.299 Sum_probs=134.0
Q ss_pred CeEEEeeeEEEeCC---CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCC----CceEEEcC---------
Q psy208 275 PILQLSEVNFEYVP---GKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPT----AGTRTVHR--------- 338 (443)
Q Consensus 275 ~~l~~~~l~~~y~~---~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~----~G~i~~~~--------- 338 (443)
++|.++|++..+.. ...+++++|+++..||+-|+||.+|||||-..|.|+|..+-. .-...++.
T Consensus 2 ~LLDIrnL~IE~~TsqG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr 81 (330)
T COG4170 2 PLLDIRNLTIEFKTSQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPR 81 (330)
T ss_pred CcccccceEEEEecCCCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChH
Confidence 46888999988742 246899999999999999999999999999999999986531 11111110
Q ss_pred ------ceEEEEeccCcccccccchhHHHHHHHhCC------------CCCHHHHHHHHhcCCCCh--hhhhccCCCCCH
Q psy208 339 ------NLKFGYFSQHHVDQLDMNLRCVQLLEAAFP------------GKPQEEYRRQLGGFGVSG--DLALQFVGSLSG 398 (443)
Q Consensus 339 ------~~~ig~~~Q~~~~~l~~~~~~~~~~~~~~~------------~~~~~~~~~~L~~~gl~~--~~~~~~~~~LSg 398 (443)
...+++++|+|..-+++..++-..+....+ +....++.++|.++|+.. +....++.+|--
T Consensus 82 ~RRk~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP~ElTe 161 (330)
T COG4170 82 ERRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPYELTE 161 (330)
T ss_pred HhhhhhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCcchhcc
Confidence 124788999998888887776554433222 234567889999999953 456678999999
Q ss_pred HHHHHHHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccccC
Q psy208 399 GQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKYTF 443 (443)
Q Consensus 399 GekqRl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~~~ 443 (443)
||-|+|.||.|++.+|.+||.|||||.+|+.++.++...|....|
T Consensus 162 GE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQ 206 (330)
T COG4170 162 GECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQ 206 (330)
T ss_pred CcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999999999999877643
No 399
>KOG0063|consensus
Probab=99.79 E-value=1.1e-18 Score=173.68 Aligned_cols=153 Identities=25% Similarity=0.383 Sum_probs=113.9
Q ss_pred EEeCCCCceeeeeeEEEeCCC-----EEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCceEEEEeccCcccccccchh
Q psy208 284 FEYVPGKPILTNVCLGATLES-----RICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLR 358 (443)
Q Consensus 284 ~~y~~~~~il~~vsl~i~~Ge-----~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ig~~~Q~~~~~l~~~~~ 358 (443)
++|++-+..+.++.|.|..|+ ++..+|.||.|||||+++++|.++|+.|.= -+...++|-||.... ....+
T Consensus 343 y~Yp~m~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~~~e--~p~lnVSykpqkisp--K~~~t 418 (592)
T KOG0063|consen 343 YSYPKMKKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEGGE--IPVLNVSYKPQKISP--KREGT 418 (592)
T ss_pred eccCcceeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCccCc--ccccceeccccccCc--cccch
Confidence 567665667788888888775 789999999999999999999999998742 123568888886432 22334
Q ss_pred HHHHHHHhCCC--CCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHH
Q psy208 359 CVQLLEAAFPG--KPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGK 436 (443)
Q Consensus 359 ~~~~~~~~~~~--~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~ 436 (443)
+...+.....+ ...+-+...+..+.+. ...++.+..|||||.||++||.+|-..+++++.|||.+.||.+.+-.-..
T Consensus 419 vR~ll~~kIr~ay~~pqF~~dvmkpL~ie-~i~dqevq~lSggelQRval~KOGGKpAdvYliDEpsAylDSeQRi~Ask 497 (592)
T KOG0063|consen 419 VRQLLHTKIRDAYMHPQFVNDVMKPLQIE-NIIDQEVQGLSGGELQRVALALCLGKPADVYLIDEPSAYLDSEQRIIASK 497 (592)
T ss_pred HHHHHHHHhHhhhcCHHHHHhhhhhhhHH-HHHhHHhhcCCchhhHHHHHHHhcCCCCceEEecCchhhcChHHHHHHHH
Confidence 44443322111 2344455566666654 56788899999999999999999999999999999999999998876666
Q ss_pred HHccc
Q psy208 437 AINKY 441 (443)
Q Consensus 437 ~L~~~ 441 (443)
.+++|
T Consensus 498 vikRf 502 (592)
T KOG0063|consen 498 VIKRF 502 (592)
T ss_pred HHHHH
Confidence 55543
No 400
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.77 E-value=1.4e-18 Score=172.67 Aligned_cols=147 Identities=27% Similarity=0.384 Sum_probs=119.8
Q ss_pred ceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcC--------CCCCCceEEEcCceEEEEeccCcccccccchhHHHH
Q psy208 291 PILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGI--------ISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQL 362 (443)
Q Consensus 291 ~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~--------~~p~~G~i~~~~~~~ig~~~Q~~~~~l~~~~~~~~~ 362 (443)
.+++|+||+|++||+++|+|++||||||||++|+|. ++|++|.|.+..+..-+.+|......+. ..++.+.
T Consensus 397 yvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~~a~iPge~Ep~f~-~~tileh 475 (593)
T COG2401 397 YVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVSALIPGEYEPEFG-EVTILEH 475 (593)
T ss_pred eeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccchhhccCcccccccC-chhHHHH
Confidence 589999999999999999999999999999999996 5799999988766644556655433344 5567777
Q ss_pred HHHhCCCCCHHHHHHHHhcCCCChhhh-hccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHcc
Q psy208 363 LEAAFPGKPQEEYRRQLGGFGVSGDLA-LQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINK 440 (443)
Q Consensus 363 ~~~~~~~~~~~~~~~~L~~~gl~~~~~-~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~ 440 (443)
+.+... +...+..+|...|++...+ .++++.||.|||-|+.||+++...|++++.||--+|||..+...+..-|.+
T Consensus 476 l~s~tG--D~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkise 552 (593)
T COG2401 476 LRSKTG--DLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISE 552 (593)
T ss_pred HhhccC--chhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHH
Confidence 765433 2334678899999865433 467899999999999999999999999999999999999999988876654
No 401
>KOG0065|consensus
Probab=99.75 E-value=2.3e-18 Score=191.45 Aligned_cols=163 Identities=26% Similarity=0.366 Sum_probs=121.9
Q ss_pred eEEEeeeEEEe---CCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCC--CCCceEEEcC--------ceEE
Q psy208 276 ILQLSEVNFEY---VPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIIS--PTAGTRTVHR--------NLKF 342 (443)
Q Consensus 276 ~l~~~~l~~~y---~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~--p~~G~i~~~~--------~~~i 342 (443)
+...+|+.+.. ++.+.+|+||+=-+.||-.+||+|+|||||||||++|+|-.. ..+|.|.+.+ ...+
T Consensus 787 V~~w~dl~~~~~~qG~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~ 866 (1391)
T KOG0065|consen 787 VFYWVDLPYEMPIQGGTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFARVS 866 (1391)
T ss_pred eEEEEeCCccccccccceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhcccc
Confidence 45556666544 134679999999999999999999999999999999999742 2345666654 2358
Q ss_pred EEeccCcccccccchhHHHHHH--Hh--CC-CCC---H-HHHHHHHhcCCCChhhhhccCCC----CCHHHHHHHHHHHH
Q psy208 343 GYFSQHHVDQLDMNLRCVQLLE--AA--FP-GKP---Q-EEYRRQLGGFGVSGDLALQFVGS----LSGGQKSRVAFARM 409 (443)
Q Consensus 343 g~~~Q~~~~~l~~~~~~~~~~~--~~--~~-~~~---~-~~~~~~L~~~gl~~~~~~~~~~~----LSgGekqRl~lA~a 409 (443)
||+.|+..+. +..|+.+-+. +. .+ ..+ + +-++++++.+++. +..+.-++. ||..||+||.||--
T Consensus 867 GYvqQ~DiH~--~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~-~~~daiVG~~G~GLs~eQRKrLTIgVE 943 (1391)
T KOG0065|consen 867 GYVEQQDIHS--PELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELK-EYADALVGLPGSGLSTEQRKRLTIGVE 943 (1391)
T ss_pred ceeecccccC--cccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCch-hhhhhhccCCCCCCCHHHhceeeEEEE
Confidence 9999975432 4566666553 11 11 111 1 3456777777775 344544554 99999999999999
Q ss_pred hccCC-CeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 410 CMAAP-NFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 410 l~~~p-~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
|+.+| .||+|||||||||..+...+++++++.
T Consensus 944 LvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkl 976 (1391)
T KOG0065|consen 944 LVANPSSILFLDEPTSGLDSQAAAIVMRFLRKL 976 (1391)
T ss_pred EecCCceeEEecCCCCCccHHHHHHHHHHHHHH
Confidence 99999 899999999999999999999998864
No 402
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.73 E-value=5.3e-18 Score=170.28 Aligned_cols=155 Identities=25% Similarity=0.315 Sum_probs=105.1
Q ss_pred eeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEc-----------------------
Q psy208 281 EVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVH----------------------- 337 (443)
Q Consensus 281 ~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~----------------------- 337 (443)
++..+|+.+..-|..+= ...+|.++||+|+||.||||-+|+|+|.+.|.=|...-.
T Consensus 79 e~vHRYg~NgFkL~~LP-~pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~~~pp~wdeVi~~FrGtELq~YF~~l~ 157 (591)
T COG1245 79 EVVHRYGVNGFKLYRLP-TPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTELQNYFKKLY 157 (591)
T ss_pred cceeeccCCceEEecCC-CCCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCCCCCCCHHHHHHHhhhhHHHHHHHHHH
Confidence 45677854322222211 245899999999999999999999999999987753210
Q ss_pred -CceEEEEeccCcccccc--cchhHHHHHHHhCCCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCC
Q psy208 338 -RNLKFGYFSQHHVDQLD--MNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAP 414 (443)
Q Consensus 338 -~~~~ig~~~Q~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p 414 (443)
++.++..-+|-- +.++ ...++.+.+.... ......++.+.+++. ..+++.+++|||||-||++||.++++++
T Consensus 158 ~g~~r~v~K~QYV-d~iPk~~KG~v~elLk~~d---e~g~~devve~l~L~-nvl~r~v~~LSGGELQr~aIaa~l~rdA 232 (591)
T COG1245 158 EGELRAVHKPQYV-DLIPKVVKGKVGELLKKVD---ERGKFDEVVERLGLE-NVLDRDVSELSGGELQRVAIAAALLRDA 232 (591)
T ss_pred cCCcceecchHHH-HHHHHHhcchHHHHHHhhh---hcCcHHHHHHHhcch-hhhhhhhhhcCchHHHHHHHHHHHhccC
Confidence 111222222210 0000 1112222222110 112355677788886 5789999999999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 415 NFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 415 ~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
+++++||||+.||+..+-...+.++++
T Consensus 233 DvY~FDEpsSyLDi~qRl~~ar~Irel 259 (591)
T COG1245 233 DVYFFDEPSSYLDIRQRLNAARVIREL 259 (591)
T ss_pred CEEEEcCCcccccHHHHHHHHHHHHHH
Confidence 999999999999999998888887764
No 403
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.73 E-value=4.6e-18 Score=159.06 Aligned_cols=110 Identities=20% Similarity=0.215 Sum_probs=81.7
Q ss_pred eeeeeeEEEeCCC-EEEEECCCCCcHHHHHHHHH--------cCCCCCCceEEEcCceEEEEeccCcccccccchhHHHH
Q psy208 292 ILTNVCLGATLES-RICIVGDNGAGKTTLLKIIM--------GIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQL 362 (443)
Q Consensus 292 il~~vsl~i~~Ge-~i~iiG~NGsGKSTLlk~l~--------G~~~p~~G~i~~~~~~~ig~~~Q~~~~~l~~~~~~~~~ 362 (443)
-+-++||++.+|+ +++|+||||||||||||+|+ |...|... ...++|++|... .
T Consensus 16 ~~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~------~~~~~~~~~~~~-~---------- 78 (200)
T cd03280 16 KVVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAE------GSSLPVFENIFA-D---------- 78 (200)
T ss_pred ceEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccccc------cccCcCccEEEE-e----------
Confidence 3557899999996 69999999999999999998 65555432 223555555421 1
Q ss_pred HHHhCCCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHH-HHc
Q psy208 363 LEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGK-AIN 439 (443)
Q Consensus 363 ~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~-~L~ 439 (443)
++.. +.....++.+|+|++|++.+++++ .+|+++|+||||++||+.....+.. .+.
T Consensus 79 -------------------lg~~-~~l~~~~s~fs~g~~~~~~i~~~~-~~p~llllDEp~~glD~~~~~~i~~~~l~ 135 (200)
T cd03280 79 -------------------IGDE-QSIEQSLSTFSSHMKNIARILQHA-DPDSLVLLDELGSGTDPVEGAALAIAILE 135 (200)
T ss_pred -------------------cCch-hhhhcCcchHHHHHHHHHHHHHhC-CCCcEEEEcCCCCCCCHHHHHHHHHHHHH
Confidence 1111 223455678999999999999874 8999999999999999999887753 443
No 404
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.65 E-value=2.5e-16 Score=148.86 Aligned_cols=144 Identities=14% Similarity=0.064 Sum_probs=82.1
Q ss_pred eeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCce----------EEEcC-ceEEEEeccCcccccccch----
Q psy208 293 LTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGT----------RTVHR-NLKFGYFSQHHVDQLDMNL---- 357 (443)
Q Consensus 293 l~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~----------i~~~~-~~~ig~~~Q~~~~~l~~~~---- 357 (443)
++++.+.+.+| ..+|+|+|||||||||..|.-.+-..... +..+. ...+-.........+..+.
T Consensus 14 ~~~~~i~~~~g-~n~i~G~NgsGKS~lleAi~~~l~~~~~~~~r~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~n~~~~ 92 (213)
T cd03277 14 YDETEFRPGPS-LNMIIGPNGSGKSSIVCAICLGLGGKPKLLGRAKKVGEFVKRGCDEGTIEIELYGNPGNIQVDNLCQF 92 (213)
T ss_pred cceeEEecCCC-eEEEECCCCCCHHHHHHHHHHHhcCCccccccccCHHHHhhCCCCcEEEEEEEEeCCCccccCCceEE
Confidence 35556666554 67999999999999999987655221110 11111 0111111111000000000
Q ss_pred hHHHHHHHhCCCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHh----ccCCCeEEEeCCCCCCCHHHHHH
Q psy208 358 RCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMC----MAAPNFLVLDEPTNHLDIETIEA 433 (443)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al----~~~p~lLiLDEPTn~LD~~s~~~ 433 (443)
..-+.... +...... +.+..+.......+.++.+||+||||++.+|.++ +.+|+++|+||||++||+.++..
T Consensus 93 ~~q~~~~~-~~~~~~~---e~l~~~~~~~~~~~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~ 168 (213)
T cd03277 93 LPQDRVGE-FAKLSPI---ELLVKFREGEQLQELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERK 168 (213)
T ss_pred EchHHHHH-HHhCChH---hHheeeecCCCccccchhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHH
Confidence 00000000 0111121 2233333322334667899999999998877554 58999999999999999999999
Q ss_pred HHHHHccc
Q psy208 434 LGKAINKY 441 (443)
Q Consensus 434 l~~~L~~~ 441 (443)
+.+.|.++
T Consensus 169 i~~~l~~~ 176 (213)
T cd03277 169 VFDMLVET 176 (213)
T ss_pred HHHHHHHH
Confidence 99988765
No 405
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.64 E-value=3.5e-16 Score=141.51 Aligned_cols=112 Identities=25% Similarity=0.231 Sum_probs=78.6
Q ss_pred eeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCceEEEEeccCcccccccchhHHHHHHHhCCCCCHH
Q psy208 294 TNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQE 373 (443)
Q Consensus 294 ~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ig~~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~ 373 (443)
...++.+.++.+++|+|||||||||+++.+....-...|.+......+.|+.... .....
T Consensus 12 ~~~~i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~------------------ 71 (162)
T cd03227 12 VPNDVTFGEGSLTIITGPNGSGKSTILDAIGLALGGAQSATRRRSGVKAGCIVAA--VSAEL------------------ 71 (162)
T ss_pred eccEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHhcchhhhccCcccCCCccee--eEEEE------------------
Confidence 3345555566799999999999999999988766665554433221112211100 00000
Q ss_pred HHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhcc----CCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 374 EYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMA----APNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 374 ~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~----~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
+ .....||+||++|+.||+++.. +|+++|||||++++|+.....+.++|.++
T Consensus 72 ----------i------~~~~~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~ 127 (162)
T cd03227 72 ----------I------FTRLQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEH 127 (162)
T ss_pred ----------e------hheeeccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Confidence 0 0012399999999999999986 78999999999999999999999988765
No 406
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.61 E-value=2.2e-15 Score=138.46 Aligned_cols=46 Identities=35% Similarity=0.429 Sum_probs=43.0
Q ss_pred CCHHHHHHHHHHHHhc----cCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 396 LSGGQKSRVAFARMCM----AAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 396 LSgGekqRl~lA~al~----~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
||+||+||++||++++ .+|+++|+||||++||+.....+.+.|.++
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~ 144 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEM 144 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999985 699999999999999999999999988764
No 407
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.59 E-value=1e-15 Score=143.47 Aligned_cols=110 Identities=13% Similarity=0.049 Sum_probs=73.4
Q ss_pred eeeEEEeCCCEEEEECCCCCcHHHHHHHHHcC-CCCCCceEEEcCceEEEEeccCcccccccchhHHHHHHHhCCCCCHH
Q psy208 295 NVCLGATLESRICIVGDNGAGKTTLLKIIMGI-ISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQE 373 (443)
Q Consensus 295 ~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~-~~p~~G~i~~~~~~~ig~~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~ 373 (443)
..++++.+|++++|+||||||||||||+|++. +.+..|.........++|++|... .
T Consensus 21 ~~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~~~~~~i~~~dqi~~-~--------------------- 78 (202)
T cd03243 21 PNDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVPAESASIPLVDRIFT-R--------------------- 78 (202)
T ss_pred eeeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHHHHcCCCccccccccCCcCEEEE-E---------------------
Confidence 34667779999999999999999999999943 334445433333334444333211 1
Q ss_pred HHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHH
Q psy208 374 EYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGK 436 (443)
Q Consensus 374 ~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~ 436 (443)
++.. +......+.+|+++++ +..+..++.+|+++||||||+++|+.....+..
T Consensus 79 --------~~~~-d~i~~~~s~~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~ 131 (202)
T cd03243 79 --------IGAE-DSISDGRSTFMAELLE-LKEILSLATPRSLVLIDELGRGTSTAEGLAIAY 131 (202)
T ss_pred --------ecCc-ccccCCceeHHHHHHH-HHHHHHhccCCeEEEEecCCCCCCHHHHHHHHH
Confidence 1110 1122344567777665 666677889999999999999999988776644
No 408
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.55 E-value=3.5e-14 Score=139.47 Aligned_cols=49 Identities=29% Similarity=0.373 Sum_probs=43.6
Q ss_pred CCCCCHHHHHHHHHHHHhcc----CCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 393 VGSLSGGQKSRVAFARMCMA----APNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 393 ~~~LSgGekqRl~lA~al~~----~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
...|||||+||++||++++. +|+++||||||++||+..+..+.+.|.++
T Consensus 168 ~~~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~ 220 (276)
T cd03241 168 AKIASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKEL 220 (276)
T ss_pred hhhcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHH
Confidence 34599999999999986543 99999999999999999999999998765
No 409
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=99.53 E-value=2.5e-13 Score=149.96 Aligned_cols=130 Identities=21% Similarity=0.269 Sum_probs=89.6
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCC-CEEEEECCCCCcHHHHHHHHHcC-CCCCCc-eEEEcCceEEEEeccCcccc
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLE-SRICIVGDNGAGKTTLLKIIMGI-ISPTAG-TRTVHRNLKFGYFSQHHVDQ 352 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~G-e~i~iiG~NGsGKSTLlk~l~G~-~~p~~G-~i~~~~~~~ig~~~Q~~~~~ 352 (443)
++.++++..-+-. ..-+-.+|+.+.++ ++++|+||||+|||||||+|+|. +.+..| .|.......++|++|... .
T Consensus 295 ~i~l~~~rhPll~-~~~~vp~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G~~Vpa~~~~~~~~~d~i~~-~ 372 (771)
T TIGR01069 295 KIILENARHPLLK-EPKVVPFTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQSGIPIPANEHSEIPYFEEIFA-D 372 (771)
T ss_pred CEEEccccCceec-CCceEeceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHHhCCCccCCccccccchhheee-e
Confidence 5777766542211 11123478899887 89999999999999999999998 566666 333332334555444321 0
Q ss_pred cccchhHHHHHHHhCCCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCCHHHHH
Q psy208 353 LDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIE 432 (443)
Q Consensus 353 l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD~~s~~ 432 (443)
+ +. .+.....++++|+|+++++.+++.+ .+|.++|||||++|+|+....
T Consensus 373 i-----------------------------~~-~~si~~~LStfS~~m~~~~~il~~~-~~~sLvLlDE~g~GtD~~eg~ 421 (771)
T TIGR01069 373 I-----------------------------GD-EQSIEQNLSTFSGHMKNISAILSKT-TENSLVLFDELGAGTDPDEGS 421 (771)
T ss_pred c-----------------------------Ch-HhHHhhhhhHHHHHHHHHHHHHHhc-CCCcEEEecCCCCCCCHHHHH
Confidence 1 00 0122244678999999999988776 789999999999999999999
Q ss_pred HHHHHH
Q psy208 433 ALGKAI 438 (443)
Q Consensus 433 ~l~~~L 438 (443)
.|...+
T Consensus 422 ala~ai 427 (771)
T TIGR01069 422 ALAISI 427 (771)
T ss_pred HHHHHH
Confidence 885433
No 410
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.52 E-value=3.5e-14 Score=135.09 Aligned_cols=116 Identities=19% Similarity=0.153 Sum_probs=83.4
Q ss_pred CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCceEEE-EeccCcccccccchhHHHHHHHhC
Q psy208 289 GKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFG-YFSQHHVDQLDMNLRCVQLLEAAF 367 (443)
Q Consensus 289 ~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ig-~~~Q~~~~~l~~~~~~~~~~~~~~ 367 (443)
...+.+|+++++.++++++|+||||+|||||+++|+-. .+ -..+| |+|.+.. .+.
T Consensus 16 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~--------~~--la~~g~~vpa~~~-~~~------------- 71 (222)
T cd03285 16 VAFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGVI--------VL--MAQIGCFVPCDSA-DIP------------- 71 (222)
T ss_pred CCeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHHH--------HH--HHHhCCCcCcccE-EEe-------------
Confidence 35689999999999999999999999999999999721 00 01122 3333211 000
Q ss_pred CCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHh--ccCCCeEEEeCC---CCCCCHHHHHHHH-HHH
Q psy208 368 PGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMC--MAAPNFLVLDEP---TNHLDIETIEALG-KAI 438 (443)
Q Consensus 368 ~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al--~~~p~lLiLDEP---Tn~LD~~s~~~l~-~~L 438 (443)
.+..++..+++... ....+|.|+++++.+++++ +.+|+++||||| ||+||+.+..+.. +.|
T Consensus 72 ------~~~~il~~~~l~d~----~~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD~~~~~~~il~~l 138 (222)
T cd03285 72 ------IVDCILARVGASDS----QLKGVSTFMAEMLETAAILKSATENSLIIIDELGRGTSTYDGFGLAWAIAEYI 138 (222)
T ss_pred ------ccceeEeeeccccc----hhcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChHHHHHHHHHHHHHH
Confidence 11234455665422 2568999999999999999 899999999999 9999999886544 444
No 411
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.52 E-value=1.1e-13 Score=132.33 Aligned_cols=143 Identities=21% Similarity=0.227 Sum_probs=96.3
Q ss_pred HHHHHHccccccCCCCCcceEEecC--------CceEEEEecccCCC---CchHHHHHHhccHHHHHHHHHHHHHHHHHh
Q psy208 20 FYCKALTLHLHLEGGMVSGQLRIPS--------HISVLHVEQEVVGD---DTPAIDSVLECDTKRQNLLNREKTITQAIN 88 (443)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~G~i~~~~--------~~~i~~l~Q~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~ 88 (443)
+|+|.+-|.+.| .+|+|.+.+ +.+|||+||....+ +.||.+.|..+........+
T Consensus 45 TLlK~iLGll~p----~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~---------- 110 (254)
T COG1121 45 TLLKAILGLLKP----SSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFR---------- 110 (254)
T ss_pred HHHHHHhCCCcC----CcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCcccccccc----------
Confidence 344444444444 559998532 36899999976443 45777777654211111100
Q ss_pred CCCCChhhHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCCChhhhhccCCCCChHHHH----------------------
Q psy208 89 NGTADANMSTELTQVFAELEAIEADKAPARASVILAGLGFTPEMQKRATKHFSGGWRK---------------------- 146 (443)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~---------------------- 146 (443)
+ ....+ .+++.++|+.+|+.+ ..+|++.+|||||+|
T Consensus 111 ----------~----------~~~~d-~~~v~~aL~~Vgm~~-~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~ 168 (254)
T COG1121 111 ----------R----------LNKKD-KEKVDEALERVGMED-LRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFT 168 (254)
T ss_pred ----------c----------ccHHH-HHHHHHHHHHcCchh-hhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcc
Confidence 0 00011 357999999999985 579999999999999
Q ss_pred -------HHHHHHHHHhhhCCCeEEEEecCHHHHhccCCcEEEEeCCeeEEEcCChhHHHH
Q psy208 147 -------MAIIWLENYLQNWPTTLLVVSHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAFDK 200 (443)
Q Consensus 147 -------~~i~wL~~~L~~~~~tviiVSHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y~~ 200 (443)
..+.-|.+.|++-+.|||+||||...+.+.||+|+.|+..-+ +.|+.++...
T Consensus 169 gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln~~~~--~~G~~~~~~~ 227 (254)
T COG1121 169 GVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLNRHLI--ASGPPEEVLT 227 (254)
T ss_pred cCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEEcCeeE--eccChhhccC
Confidence 344445555655588999999999999999999999965543 5688776643
No 412
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.52 E-value=2.9e-14 Score=131.74 Aligned_cols=157 Identities=18% Similarity=0.242 Sum_probs=116.0
Q ss_pred hhhhhhhhcchHHHHHHHcccccc---------CC--------------CCCcceEEecCC-c-----------eEEEEe
Q psy208 8 TVSNSIFCFSSEFYCKALTLHLHL---------EG--------------GMVSGQLRIPSH-I-----------SVLHVE 52 (443)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~---------~~--------------~~~~G~i~~~~~-~-----------~i~~l~ 52 (443)
.+.|+...||..-..|.|++.+.. .| .+++|+|.+.+. + ++|++.
T Consensus 4 ~i~~l~K~fg~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVF 83 (240)
T COG1126 4 EIKNLSKSFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVGMVF 83 (240)
T ss_pred EEEeeeEEeCCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcCeec
Confidence 356888888888888888887776 11 258899988651 1 478999
Q ss_pred cccCC-CCchHHHHHHhccHHHHHHHHHHHHHHHHHhCCCCChhhHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCCChh
Q psy208 53 QEVVG-DDTPAIDSVLECDTKRQNLLNREKTITQAINNGTADANMSTELTQVFAELEAIEADKAPARASVILAGLGFTPE 131 (443)
Q Consensus 53 Q~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~~~L~~lgl~~~ 131 (443)
|+... +..|+++-+.-+.-.+ -.....+++.++.+.|..+|+.+.
T Consensus 84 Q~fnLFPHlTvleNv~lap~~v----------------------------------~~~~k~eA~~~A~~lL~~VGL~~k 129 (240)
T COG1126 84 QQFNLFPHLTVLENVTLAPVKV----------------------------------KKLSKAEAREKALELLEKVGLADK 129 (240)
T ss_pred ccccccccchHHHHHHhhhHHH----------------------------------cCCCHHHHHHHHHHHHHHcCchhh
Confidence 99864 6677776665432111 112223456789999999999864
Q ss_pred hhhccCCCCChHHHH-----------------------------HHHHHHHHHhhhCCCeEEEEecCHHHHhccCCcEEE
Q psy208 132 MQKRATKHFSGGWRK-----------------------------MAIIWLENYLQNWPTTLLVVSHDRHFLDSVPTDIFH 182 (443)
Q Consensus 132 ~~~~~~~~LSGGqr~-----------------------------~~i~wL~~~L~~~~~tviiVSHDr~fLd~v~~~i~~ 182 (443)
.+..+++||||||| ..+.-+..-|.+-+.|.|+|+|+..|..+|||||+.
T Consensus 130 -a~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviF 208 (240)
T COG1126 130 -ADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIF 208 (240)
T ss_pred -hhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEE
Confidence 58899999999999 233344455667789999999999999999999999
Q ss_pred EeCCeeEEEcCChhHHHH
Q psy208 183 LHSQRIDTYRGNYEAFDK 200 (443)
Q Consensus 183 l~~g~i~~~~G~y~~y~~ 200 (443)
+++|.+..- |..+++..
T Consensus 209 md~G~iie~-g~p~~~f~ 225 (240)
T COG1126 209 MDQGKIIEE-GPPEEFFD 225 (240)
T ss_pred eeCCEEEEe-cCHHHHhc
Confidence 999988764 57666543
No 413
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.52 E-value=2.5e-14 Score=134.92 Aligned_cols=155 Identities=17% Similarity=0.237 Sum_probs=112.7
Q ss_pred hhhhhhhhcchHHHHHHHcccccc-----------CC------------CCCcceEEecC-----------CceEEEEec
Q psy208 8 TVSNSIFCFSSEFYCKALTLHLHL-----------EG------------GMVSGQLRIPS-----------HISVLHVEQ 53 (443)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~-----------~~------------~~~~G~i~~~~-----------~~~i~~l~Q 53 (443)
.|.||++.|+.....+.+++.+.+ +| .|++|+|.+.. .-+|||+=|
T Consensus 3 ~~~nvsk~y~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGYviQ 82 (309)
T COG1125 3 EFENVSKRYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGYVIQ 82 (309)
T ss_pred eeeeeehhcCCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhhhhh
Confidence 477888888888888888887766 11 26889998642 136899888
Q ss_pred ccCC-CCchHHHHHHhccHHHHHHHHHHHHHHHHHhCCCCChhhHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCCCh-h
Q psy208 54 EVVG-DDTPAIDSVLECDTKRQNLLNREKTITQAINNGTADANMSTELTQVFAELEAIEADKAPARASVILAGLGFTP-E 131 (443)
Q Consensus 54 ~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~~~L~~lgl~~-~ 131 (443)
.... +..|+.+-+.-. -++..|+...++.|+.++|..+|+++ +
T Consensus 83 qigLFPh~Tv~eNIa~V-----------------------------------P~L~~w~k~~i~~r~~ELl~lvgL~p~~ 127 (309)
T COG1125 83 QIGLFPHLTVAENIATV-----------------------------------PKLLGWDKERIKKRADELLDLVGLDPSE 127 (309)
T ss_pred hcccCCCccHHHHHHhh-----------------------------------hhhcCCCHHHHHHHHHHHHHHhCCCHHH
Confidence 8764 444543322110 11223444457789999999999986 5
Q ss_pred hhhccCCCCChHHHH--------------------------HHHHHHHHHh----hhCCCeEEEEecCHHHHhccCCcEE
Q psy208 132 MQKRATKHFSGGWRK--------------------------MAIIWLENYL----QNWPTTLLVVSHDRHFLDSVPTDIF 181 (443)
Q Consensus 132 ~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L----~~~~~tviiVSHDr~fLd~v~~~i~ 181 (443)
+.+|.+++|||||+| -.+..|.+.+ ++.+.|||+||||.+..-..+|||+
T Consensus 128 ~~~RyP~eLSGGQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~ 207 (309)
T COG1125 128 YADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIA 207 (309)
T ss_pred HhhcCchhcCcchhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEE
Confidence 789999999999999 1233343333 5689999999999999999999999
Q ss_pred EEeCCeeEEEcCChhHH
Q psy208 182 HLHSQRIDTYRGNYEAF 198 (443)
Q Consensus 182 ~l~~g~i~~~~G~y~~y 198 (443)
+|+.|++..| ++.+..
T Consensus 208 vm~~G~i~Q~-~~P~~i 223 (309)
T COG1125 208 VMDAGEIVQY-DTPDEI 223 (309)
T ss_pred EecCCeEEEe-CCHHHH
Confidence 9999999988 554443
No 414
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.49 E-value=3.6e-14 Score=133.19 Aligned_cols=114 Identities=18% Similarity=0.172 Sum_probs=79.6
Q ss_pred CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCceEEEEe-ccCcccccccchhHHHHHHHhC
Q psy208 289 GKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYF-SQHHVDQLDMNLRCVQLLEAAF 367 (443)
Q Consensus 289 ~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ig~~-~Q~~~~~l~~~~~~~~~~~~~~ 367 (443)
...+.+|++|++.+|++++|+||||+|||||+|+|+++.- . .++|++ |-. ....+.+
T Consensus 15 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~-------l---a~~G~~vpa~-----~~~l~~~------- 72 (204)
T cd03282 15 KNFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLAI-------M---AQIGCFVPAE-----YATLPIF------- 72 (204)
T ss_pred CcEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHHH-------H---HHcCCCcchh-----hcCccCh-------
Confidence 4579999999999999999999999999999999987631 0 012221 111 0111111
Q ss_pred CCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCCHHHHHHH
Q psy208 368 PGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEAL 434 (443)
Q Consensus 368 ~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l 434 (443)
..++..++.. +...+..+.+|+|+++. ..+..++.+|+++|||||++|+|+.....+
T Consensus 73 --------d~I~~~~~~~-d~~~~~~S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt~~~~~~~l 129 (204)
T cd03282 73 --------NRLLSRLSND-DSMERNLSTFASEMSET-AYILDYADGDSLVLIDELGRGTSSADGFAI 129 (204)
T ss_pred --------hheeEecCCc-cccchhhhHHHHHHHHH-HHHHHhcCCCcEEEeccccCCCCHHHHHHH
Confidence 2223344443 34556778999999975 555667899999999999999999764444
No 415
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.48 E-value=6.1e-13 Score=125.18 Aligned_cols=147 Identities=20% Similarity=0.271 Sum_probs=105.2
Q ss_pred hhhhhhhcchHH----HHHHHcccccc-----------C----------C--CCCcceEEecC------------CceEE
Q psy208 9 VSNSIFCFSSEF----YCKALTLHLHL-----------E----------G--GMVSGQLRIPS------------HISVL 49 (443)
Q Consensus 9 ~~~~~~~~~~~~----~~~~~~~~~~~-----------~----------~--~~~~G~i~~~~------------~~~i~ 49 (443)
+.|+.+.|++.. ..+.+++.+.+ + | .+++|+|.+.+ --.|-
T Consensus 6 v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~VQ 85 (252)
T COG1124 6 VRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPVQ 85 (252)
T ss_pred EeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhcccee
Confidence 557777777777 77777777766 1 1 15779998653 23478
Q ss_pred EEecccCC--CCchHHHHHHhccHHHHHHHHHHHHHHHHHhCCCCChhhHHHHHHHHHHHhhcccCCHHHHHHHHHHhCC
Q psy208 50 HVEQEVVG--DDTPAIDSVLECDTKRQNLLNREKTITQAINNGTADANMSTELTQVFAELEAIEADKAPARASVILAGLG 127 (443)
Q Consensus 50 ~l~Q~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~~~L~~lg 127 (443)
++.|+|.. .+..+++..+.. .+. ..+-.+.+.|+.++|+.+|
T Consensus 86 mVFQDp~~SLnP~~tv~~~l~E----------------pl~--------------------~~~~~~~~~~i~~~L~~Vg 129 (252)
T COG1124 86 MVFQDPYSSLNPRRTVGRILSE----------------PLR--------------------PHGLSKSQQRIAELLDQVG 129 (252)
T ss_pred EEecCCccccCcchhHHHHHhh----------------hhc--------------------cCCccHHHHHHHHHHHHcC
Confidence 89999853 344333333211 010 0122345567999999999
Q ss_pred CChhhhhccCCCCChHHHH-----------------------------HHHHHHHHHh-hhCCCeEEEEecCHHHHhccC
Q psy208 128 FTPEMQKRATKHFSGGWRK-----------------------------MAIIWLENYL-QNWPTTLLVVSHDRHFLDSVP 177 (443)
Q Consensus 128 l~~~~~~~~~~~LSGGqr~-----------------------------~~i~wL~~~L-~~~~~tviiVSHDr~fLd~v~ 177 (443)
+++.+++|.+++|||||+| ..|..|...| ++++.|+|+||||...+..+|
T Consensus 130 L~~~~l~R~P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~c 209 (252)
T COG1124 130 LPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMC 209 (252)
T ss_pred CCHHHHhcCchhcChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHh
Confidence 9999999999999999999 2333344444 678999999999999999999
Q ss_pred CcEEEEeCCeeEEE
Q psy208 178 TDIFHLHSQRIDTY 191 (443)
Q Consensus 178 ~~i~~l~~g~i~~~ 191 (443)
+||++|++|+++..
T Consensus 210 dRi~Vm~~G~ivE~ 223 (252)
T COG1124 210 DRIAVMDNGQIVEI 223 (252)
T ss_pred hheeeeeCCeEEEe
Confidence 99999999999864
No 416
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.47 E-value=2.3e-13 Score=128.67 Aligned_cols=100 Identities=17% Similarity=0.118 Sum_probs=74.1
Q ss_pred eEEEeCC--CEEEEECCCCCcHHHHHHHHH--cCCCCCCceEEEcCceEEEEeccCcccccccchhHHHHHHHhCCCCCH
Q psy208 297 CLGATLE--SRICIVGDNGAGKTTLLKIIM--GIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQ 372 (443)
Q Consensus 297 sl~i~~G--e~i~iiG~NGsGKSTLlk~l~--G~~~p~~G~i~~~~~~~ig~~~Q~~~~~l~~~~~~~~~~~~~~~~~~~ 372 (443)
++.+.++ .+++|+||||+|||||||.|+ +.+ +..|.........++|++|... .+....+..+
T Consensus 21 d~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~l-a~~G~~v~a~~~~~~~~d~i~~-~l~~~~si~~----------- 87 (213)
T cd03281 21 DTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFL-AHIGSFVPADSATIGLVDKIFT-RMSSRESVSS----------- 87 (213)
T ss_pred eEEecCCCceEEEEECCCCCChHHHHHHHHHHHHH-HhCCCeeEcCCcEEeeeeeeee-eeCCccChhh-----------
Confidence 3444554 689999999999999999998 434 6778877777788999888642 2222111110
Q ss_pred HHHHHHHhcCCCChhhhhccCCCCC--HHHHHHHHHHHHhccCCCeEEEeCCCCCCCHHHH
Q psy208 373 EEYRRQLGGFGVSGDLALQFVGSLS--GGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETI 431 (443)
Q Consensus 373 ~~~~~~L~~~gl~~~~~~~~~~~LS--gGekqRl~lA~al~~~p~lLiLDEPTn~LD~~s~ 431 (443)
.+| .-+-+|++++++++.+|.++|||||++++|+...
T Consensus 88 ----------------------~~S~f~~el~~l~~~l~~~~~~slvllDE~~~gtd~~~~ 126 (213)
T cd03281 88 ----------------------GQSAFMIDLYQVSKALRLATRRSLVLIDEFGKGTDTEDG 126 (213)
T ss_pred ----------------------ccchHHHHHHHHHHHHHhCCCCcEEEeccccCCCCHHHH
Confidence 112 3567899999999999999999999999998653
No 417
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.46 E-value=7.7e-14 Score=130.51 Aligned_cols=112 Identities=19% Similarity=0.173 Sum_probs=65.0
Q ss_pred CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCC-CCceEEEcCceEEEEeccCcccccccchhHHHHHHHhCC
Q psy208 290 KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISP-TAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEAAFP 368 (443)
Q Consensus 290 ~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p-~~G~i~~~~~~~ig~~~Q~~~~~l~~~~~~~~~~~~~~~ 368 (443)
+.+++|++|+. |++++|+||||||||||+|+|+|.... ..|.- +.. ..+++| . ..+....+..+.+.....
T Consensus 14 ~~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~-v~a---~~~~~q-~-~~l~~~~~~~d~l~~~~s 85 (199)
T cd03283 14 KRVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVILAQAGAP-VCA---SSFELP-P-VKIFTSIRVSDDLRDGIS 85 (199)
T ss_pred CeecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHHHHHcCCE-Eec---CccCcc-c-ceEEEeccchhccccccC
Confidence 45777776654 799999999999999999999985531 23321 111 123344 2 222233333332211000
Q ss_pred CCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhc--cCCCeEEEeCCCCCCCHHHHHHHHH
Q psy208 369 GKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCM--AAPNFLVLDEPTNHLDIETIEALGK 436 (443)
Q Consensus 369 ~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~--~~p~lLiLDEPTn~LD~~s~~~l~~ 436 (443)
....+.+|+.-+...+ .+|+++|+||||+++|+.....+..
T Consensus 86 ---------------------------~~~~e~~~~~~iL~~~~~~~p~llllDEp~~glD~~~~~~l~~ 128 (199)
T cd03283 86 ---------------------------YFYAELRRLKEIVEKAKKGEPVLFLLDEIFKGTNSRERQAASA 128 (199)
T ss_pred ---------------------------hHHHHHHHHHHHHHhccCCCCeEEEEecccCCCCHHHHHHHHH
Confidence 0012223332222233 4999999999999999998876543
No 418
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.46 E-value=7.3e-13 Score=126.65 Aligned_cols=141 Identities=18% Similarity=0.129 Sum_probs=104.9
Q ss_pred chHHHHHHHccccccCCCCCcceEEecC------------CceEEEEecccCC--CCchHHHHHHhccHHHHHHHHHHHH
Q psy208 17 SSEFYCKALTLHLHLEGGMVSGQLRIPS------------HISVLHVEQEVVG--DDTPAIDSVLECDTKRQNLLNREKT 82 (443)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~G~i~~~~------------~~~i~~l~Q~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~ 82 (443)
|=++|++.++|.+.|.+ |.|.+.. .-++||+.|+|.. -..||.+++.-+..
T Consensus 42 GKSTL~~~l~GLl~p~~----G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~~~tV~~evafg~~----------- 106 (235)
T COG1122 42 GKSTLLKLLNGLLKPTS----GEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLE----------- 106 (235)
T ss_pred CHHHHHHHHcCcCcCCC----CEEEECCeeccchhhHHHhhcceEEEEECcccccccCcHHHHHhhchh-----------
Confidence 45788888998888887 6764321 1259999999853 35577666543210
Q ss_pred HHHHHhCCCCChhhHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCCChhhhhccCCCCChHHHH----------------
Q psy208 83 ITQAINNGTADANMSTELTQVFAELEAIEADKAPARASVILAGLGFTPEMQKRATKHFSGGWRK---------------- 146 (443)
Q Consensus 83 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~---------------- 146 (443)
...+...+++.|+..+|..+|+... +++++++|||||||
T Consensus 107 ------------------------n~g~~~~e~~~rv~~~l~~vgl~~~-~~r~p~~LSGGqkqRvaIA~vLa~~P~ili 161 (235)
T COG1122 107 ------------------------NLGLPREEIEERVAEALELVGLEEL-LDRPPFNLSGGQKQRVAIAGVLAMGPEILL 161 (235)
T ss_pred ------------------------hcCCCHHHHHHHHHHHHHHcCchhh-ccCCccccCCcceeeHHhhHHHHcCCCEEE
Confidence 0011122466799999999999864 79999999999999
Q ss_pred ----------HHHHHHHHHhhh----CCCeEEEEecCHHHHhccCCcEEEEeCCeeEEEcCChhHH
Q psy208 147 ----------MAIIWLENYLQN----WPTTLLVVSHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAF 198 (443)
Q Consensus 147 ----------~~i~wL~~~L~~----~~~tviiVSHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y 198 (443)
.+..++.+.+++ .+.|+|+||||.+++..+|+++++|++|++. +.|....+
T Consensus 162 LDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~-~~g~p~~i 226 (235)
T COG1122 162 LDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKIL-ADGDPAEI 226 (235)
T ss_pred EcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEe-ecCCHHHH
Confidence 566777776654 3579999999999999999999999999995 67775443
No 419
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.43 E-value=1.4e-12 Score=127.76 Aligned_cols=50 Identities=28% Similarity=0.226 Sum_probs=45.2
Q ss_pred CCCCCHHHHHHHHHHHHhc---------cCCCeEEEeCCCCCCCHHHHHHHHHHHcccc
Q psy208 393 VGSLSGGQKSRVAFARMCM---------AAPNFLVLDEPTNHLDIETIEALGKAINKYT 442 (443)
Q Consensus 393 ~~~LSgGekqRl~lA~al~---------~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~~ 442 (443)
...||+||+++++||++++ .+|+++||||||++||+..++.+.+.|.++.
T Consensus 181 ~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~~ 239 (270)
T cd03242 181 ADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGRV 239 (270)
T ss_pred HHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcCC
Confidence 4568999999999999975 7999999999999999999999999997653
No 420
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=99.42 E-value=1e-13 Score=128.21 Aligned_cols=99 Identities=19% Similarity=0.196 Sum_probs=67.4
Q ss_pred EEEECCCCCcHHHHHHHHH-cCCCCCCceEEEcCceEEEEeccCcccccccchhHHHHHHHhCCCCCHHHHHHHHhcCCC
Q psy208 306 ICIVGDNGAGKTTLLKIIM-GIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGV 384 (443)
Q Consensus 306 i~iiG~NGsGKSTLlk~l~-G~~~p~~G~i~~~~~~~ig~~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl 384 (443)
++|+||||+|||||+|.|+ ..+.+..|.........++++.+-. ..++.
T Consensus 2 ~~ltG~N~~GKst~l~~i~~~~~la~~G~~v~a~~~~~~~~d~il------------------------------~~~~~ 51 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVGLIVIMAQIGSFVPAESAELPVFDRIF------------------------------TRIGA 51 (185)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHHHhCCCeeehheEecccceEE------------------------------EEeCC
Confidence 6899999999999999998 4444555654444444555544321 12222
Q ss_pred ChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHH
Q psy208 385 SGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGK 436 (443)
Q Consensus 385 ~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~ 436 (443)
. +...+..+++|+|+++...++. .+.+|+++|+|||++++|+.....+..
T Consensus 52 ~-d~~~~~~s~fs~~~~~l~~~l~-~~~~~~llllDEp~~g~d~~~~~~~~~ 101 (185)
T smart00534 52 S-DSLAQGLSTFMVEMKETANILK-NATENSLVLLDELGRGTSTYDGVAIAA 101 (185)
T ss_pred C-CchhccccHHHHHHHHHHHHHH-hCCCCeEEEEecCCCCCCHHHHHHHHH
Confidence 1 2345667889998887444333 345999999999999999997766643
No 421
>KOG0065|consensus
Probab=99.40 E-value=4.4e-13 Score=149.82 Aligned_cols=149 Identities=26% Similarity=0.319 Sum_probs=112.0
Q ss_pred CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCC---CCceEEEcC--------ceEEEEeccCcccccccchh
Q psy208 290 KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISP---TAGTRTVHR--------NLKFGYFSQHHVDQLDMNLR 358 (443)
Q Consensus 290 ~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p---~~G~i~~~~--------~~~ig~~~Q~~~~~l~~~~~ 358 (443)
..+++|+|.-+++|+.+.++||.||||||||+.|+|.+.- ..|+|.+++ +..++|.+|+..+. +..|
T Consensus 128 ~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~--p~lT 205 (1391)
T KOG0065|consen 128 IQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHF--PELT 205 (1391)
T ss_pred ceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEecccccccc--ceeE
Confidence 4799999999999999999999999999999999998753 245676653 24588999875432 2333
Q ss_pred HHH---HHH-HhCC-----CCCHHH-----HHHHHhcCCCChhhhhc-----cCCCCCHHHHHHHHHHHHhccCCCeEEE
Q psy208 359 CVQ---LLE-AAFP-----GKPQEE-----YRRQLGGFGVSGDLALQ-----FVGSLSGGQKSRVAFARMCMAAPNFLVL 419 (443)
Q Consensus 359 ~~~---~~~-~~~~-----~~~~~~-----~~~~L~~~gl~~~~~~~-----~~~~LSgGekqRl~lA~al~~~p~lLiL 419 (443)
+.+ ... ...+ +..+.+ ...+++.+|+.. -.+. -+.-.|||||+||.+|-+++.+|.++.+
T Consensus 206 VreTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~-~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~ 284 (1391)
T KOG0065|consen 206 VRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDH-CADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFW 284 (1391)
T ss_pred EeehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchh-hccceecccccccccCcccceeeeeeeeecCcceeee
Confidence 322 222 1111 222222 335788889852 3333 3457899999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHccc
Q psy208 420 DEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 420 DEPTn~LD~~s~~~l~~~L~~~ 441 (443)
||+|+|||..+.-.+.++|+..
T Consensus 285 De~t~GLDSsTal~iik~lr~~ 306 (1391)
T KOG0065|consen 285 DEITRGLDSSTAFQIIKALRQL 306 (1391)
T ss_pred ecccccccHHHHHHHHHHHHHH
Confidence 9999999999999999998764
No 422
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.39 E-value=4.8e-12 Score=126.12 Aligned_cols=156 Identities=17% Similarity=0.123 Sum_probs=107.7
Q ss_pred hhhhhhhhhhcchHHHHHHHcccccc---------CC--------------CCCcceEEecC----------CceEEEEe
Q psy208 6 VNTVSNSIFCFSSEFYCKALTLHLHL---------EG--------------GMVSGQLRIPS----------HISVLHVE 52 (443)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~--------------~~~~G~i~~~~----------~~~i~~l~ 52 (443)
+=.+.|+++.|+....++.+++.+.+ +| .|++|+|.+.+ .-++||++
T Consensus 7 ~i~i~~l~k~~~~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~ig~v~ 86 (306)
T PRK13537 7 PIDFRNVEKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGVVP 86 (306)
T ss_pred eEEEEeEEEEECCeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcEEEEe
Confidence 33566777777665566666666555 21 25779987631 13699999
Q ss_pred cccCCC-CchHHHHHHhccHHHHHHHHHHHHHHHHHhCCCCChhhHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCCChh
Q psy208 53 QEVVGD-DTPAIDSVLECDTKRQNLLNREKTITQAINNGTADANMSTELTQVFAELEAIEADKAPARASVILAGLGFTPE 131 (443)
Q Consensus 53 Q~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~~~L~~lgl~~~ 131 (443)
|++... ..|+.+.+... ..+ ......+...++..+++.+|+.+
T Consensus 87 q~~~~~~~~tv~e~l~~~---------------~~~--------------------~~~~~~~~~~~~~~~l~~~~l~~- 130 (306)
T PRK13537 87 QFDNLDPDFTVRENLLVF---------------GRY--------------------FGLSAAAARALVPPLLEFAKLEN- 130 (306)
T ss_pred ccCcCCCCCcHHHHHHHH---------------HHH--------------------cCCCHHHHHHHHHHHHHHcCCch-
Confidence 998654 34554433210 000 00011123347888899999975
Q ss_pred hhhccCCCCChHHHH--------------------------HHHHHHHHHhhhC---CCeEEEEecCHHHHhccCCcEEE
Q psy208 132 MQKRATKHFSGGWRK--------------------------MAIIWLENYLQNW---PTTLLVVSHDRHFLDSVPTDIFH 182 (443)
Q Consensus 132 ~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L~~~---~~tviiVSHDr~fLd~v~~~i~~ 182 (443)
..++++.+||||||+ .++.++.+.|+++ +.|||++|||.+++..+||+|+.
T Consensus 131 ~~~~~~~~LS~G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~i 210 (306)
T PRK13537 131 KADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCV 210 (306)
T ss_pred HhcCchhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEE
Confidence 468999999999999 6777888877543 67999999999999999999999
Q ss_pred EeCCeeEEEcCChhHH
Q psy208 183 LHSQRIDTYRGNYEAF 198 (443)
Q Consensus 183 l~~g~i~~~~G~y~~y 198 (443)
|++|++. +.|..+.+
T Consensus 211 l~~G~i~-~~g~~~~l 225 (306)
T PRK13537 211 IEEGRKI-AEGAPHAL 225 (306)
T ss_pred EECCEEE-EECCHHHH
Confidence 9999996 56886654
No 423
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.39 E-value=6.2e-12 Score=122.08 Aligned_cols=83 Identities=27% Similarity=0.352 Sum_probs=69.5
Q ss_pred HHHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------HHHHHHHHHhhh---CCCeEEEE
Q psy208 116 PARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAIIWLENYLQN---WPTTLLVV 166 (443)
Q Consensus 116 ~~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L~~---~~~tviiV 166 (443)
+.++.++++.+|+.....++++.+||||||+ .+..+|.+.|++ .+.|||+|
T Consensus 129 ~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiiv 208 (257)
T PRK10619 129 RERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVV 208 (257)
T ss_pred HHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 4578888999999854347889999999999 677788887643 46899999
Q ss_pred ecCHHHHhccCCcEEEEeCCeeEEEcCChhHHH
Q psy208 167 SHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAFD 199 (443)
Q Consensus 167 SHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y~ 199 (443)
|||.+++..+||+|++|++|++. +.|+++++.
T Consensus 209 sH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~ 240 (257)
T PRK10619 209 THEMGFARHVSSHVIFLHQGKIE-EEGAPEQLF 240 (257)
T ss_pred eCCHHHHHHhcCEEEEEECCEEE-EeCCHHHhh
Confidence 99999999999999999999997 568877653
No 424
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.39 E-value=5.8e-12 Score=125.39 Aligned_cols=80 Identities=19% Similarity=0.143 Sum_probs=66.8
Q ss_pred HHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------HHHHHHHHHhhhC---CCeEEEEe
Q psy208 117 ARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAIIWLENYLQNW---PTTLLVVS 167 (443)
Q Consensus 117 ~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L~~~---~~tviiVS 167 (443)
.++..+++.+|+++ ..++++.+||||||+ .+..++.+.|+++ +.|||+||
T Consensus 114 ~~~~~ll~~~~l~~-~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~s 192 (303)
T TIGR01288 114 AVIPSLLEFARLES-KADVRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTT 192 (303)
T ss_pred HHHHHHHHHCCChh-HhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 35677888899975 468999999999999 5777888877543 67999999
Q ss_pred cCHHHHhccCCcEEEEeCCeeEEEcCChhHH
Q psy208 168 HDRHFLDSVPTDIFHLHSQRIDTYRGNYEAF 198 (443)
Q Consensus 168 HDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y 198 (443)
||.+++..+||+|+.|++|++. +.|..++.
T Consensus 193 H~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~ 222 (303)
T TIGR01288 193 HFMEEAERLCDRLCVLESGRKI-AEGRPHAL 222 (303)
T ss_pred CCHHHHHHhCCEEEEEECCEEE-EEcCHHHH
Confidence 9999999999999999999986 56776543
No 425
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.39 E-value=5.8e-12 Score=120.59 Aligned_cols=81 Identities=20% Similarity=0.233 Sum_probs=67.8
Q ss_pred HHHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------HHHHHHHHHhhh----CCCeEEE
Q psy208 116 PARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAIIWLENYLQN----WPTTLLV 165 (443)
Q Consensus 116 ~~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L~~----~~~tvii 165 (443)
..++..+++.+|+.+ ..++++.+||||||+ .+..++.++|++ .+.|||+
T Consensus 114 ~~~~~~~l~~~~l~~-~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~ 192 (235)
T cd03261 114 REIVLEKLEAVGLRG-AEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIM 192 (235)
T ss_pred HHHHHHHHHHcCCch-hhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEE
Confidence 346788899999975 458999999999999 567777777754 4689999
Q ss_pred EecCHHHHhccCCcEEEEeCCeeEEEcCChhHH
Q psy208 166 VSHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAF 198 (443)
Q Consensus 166 VSHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y 198 (443)
||||.+++..+||+|+.|++|++. +.|.++.+
T Consensus 193 vsH~~~~~~~~~d~v~~l~~G~i~-~~g~~~~~ 224 (235)
T cd03261 193 VTHDLDTAFAIADRIAVLYDGKIV-AEGTPEEL 224 (235)
T ss_pred EecCHHHHHHhcCEEEEEECCeEE-EecCHHHH
Confidence 999999999999999999999986 56776655
No 426
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.39 E-value=1.5e-12 Score=125.05 Aligned_cols=83 Identities=25% Similarity=0.353 Sum_probs=68.7
Q ss_pred HHHHHHHHHhCCCChhhhhccCC-CCChHHHH--------------------------HHHHHHHHHhhhC---CCeEEE
Q psy208 116 PARASVILAGLGFTPEMQKRATK-HFSGGWRK--------------------------MAIIWLENYLQNW---PTTLLV 165 (443)
Q Consensus 116 ~~rv~~~L~~lgl~~~~~~~~~~-~LSGGqr~--------------------------~~i~wL~~~L~~~---~~tvii 165 (443)
..++..++..+|++....++++. +||||||+ .+..++.++|+++ +.|||+
T Consensus 120 ~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~ 199 (243)
T TIGR01978 120 LKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLI 199 (243)
T ss_pred HHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEE
Confidence 45788999999997544577887 59999999 5778888888654 579999
Q ss_pred EecCHHHHhcc-CCcEEEEeCCeeEEEcCChhHHH
Q psy208 166 VSHDRHFLDSV-PTDIFHLHSQRIDTYRGNYEAFD 199 (443)
Q Consensus 166 VSHDr~fLd~v-~~~i~~l~~g~i~~~~G~y~~y~ 199 (443)
||||.+++..+ ||+|+.|++|++. +.|+++.+.
T Consensus 200 vsH~~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~ 233 (243)
T TIGR01978 200 ITHYQRLLNYIKPDYVHVLLDGRIV-KSGDVELAK 233 (243)
T ss_pred EEecHHHHHhhcCCeEEEEeCCEEE-EecCHHHhc
Confidence 99999999998 8999999999996 568877553
No 427
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.39 E-value=5.3e-12 Score=125.78 Aligned_cols=83 Identities=17% Similarity=0.244 Sum_probs=67.9
Q ss_pred HHHHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------HHHHHHHHHhh---hCCCeEEE
Q psy208 115 APARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAIIWLENYLQ---NWPTTLLV 165 (443)
Q Consensus 115 ~~~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L~---~~~~tvii 165 (443)
+..++.+++..+||+....++++.+||||||+ .+..++.+.|+ +.+.|||+
T Consensus 141 ~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiii 220 (305)
T PRK13651 141 AKKRAAKYIELVGLDESYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIIL 220 (305)
T ss_pred HHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence 34578899999999755678999999999999 46666666664 34789999
Q ss_pred EecCHHHHhccCCcEEEEeCCeeEEEcCChhHH
Q psy208 166 VSHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAF 198 (443)
Q Consensus 166 VSHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y 198 (443)
||||.+++..+||+|++|++|++.. .|.....
T Consensus 221 vtHd~~~~~~~adrv~vl~~G~i~~-~g~~~~~ 252 (305)
T PRK13651 221 VTHDLDNVLEWTKRTIFFKDGKIIK-DGDTYDI 252 (305)
T ss_pred EeeCHHHHHHhCCEEEEEECCEEEE-ECCHHHH
Confidence 9999999999999999999999864 4655443
No 428
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.38 E-value=5.2e-12 Score=125.67 Aligned_cols=141 Identities=22% Similarity=0.242 Sum_probs=99.3
Q ss_pred chHHHHHHHccccccCCCCCcceEEecC----------CceEEEEecccCCC-CchHHHHHHhccHHHHHHHHHHHHHHH
Q psy208 17 SSEFYCKALTLHLHLEGGMVSGQLRIPS----------HISVLHVEQEVVGD-DTPAIDSVLECDTKRQNLLNREKTITQ 85 (443)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~G~i~~~~----------~~~i~~l~Q~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~l~~ 85 (443)
|=++|++.++|.+.|+. |+|.+.+ .-++||++|++... ..|+.+.+... .
T Consensus 31 GKSTLl~~l~Gl~~p~~----G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~---------------~ 91 (302)
T TIGR01188 31 GKTTTIRMLTTLLRPTS----GTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGRENLEMM---------------G 91 (302)
T ss_pred CHHHHHHHHhCCCCCCc----eEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcHHHHHHHH---------------H
Confidence 34677788888777665 8887632 12489999997653 34554332110 0
Q ss_pred HHhCCCCChhhHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCCChhhhhccCCCCChHHHH-------------------
Q psy208 86 AINNGTADANMSTELTQVFAELEAIEADKAPARASVILAGLGFTPEMQKRATKHFSGGWRK------------------- 146 (443)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~------------------- 146 (443)
.+. + ....+...++.++|..+|+.+ ..++++.+||||||+
T Consensus 92 ~~~-~-------------------~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDE 150 (302)
T TIGR01188 92 RLY-G-------------------LPKDEAEERAEELLELFELGE-AADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDE 150 (302)
T ss_pred HHc-C-------------------CCHHHHHHHHHHHHHHcCChh-HhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 000 0 001122347888999999985 468999999999999
Q ss_pred -------HHHHHHHHHhhhC---CCeEEEEecCHHHHhccCCcEEEEeCCeeEEEcCChhHH
Q psy208 147 -------MAIIWLENYLQNW---PTTLLVVSHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAF 198 (443)
Q Consensus 147 -------~~i~wL~~~L~~~---~~tviiVSHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y 198 (443)
.+..++.+.|+++ +.|||++|||.+++..+||+|+.|++|++. +.|+.+.+
T Consensus 151 Pt~gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~-~~g~~~~l 211 (302)
T TIGR01188 151 PTTGLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRII-AEGTPEEL 211 (302)
T ss_pred CCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEE-EECCHHHH
Confidence 5777777777543 579999999999999999999999999996 46776554
No 429
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.37 E-value=7.9e-12 Score=123.54 Aligned_cols=84 Identities=19% Similarity=0.171 Sum_probs=69.7
Q ss_pred HHHHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------HHHHHHHHHhh---hCCCeEEE
Q psy208 115 APARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAIIWLENYLQ---NWPTTLLV 165 (443)
Q Consensus 115 ~~~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L~---~~~~tvii 165 (443)
.+.++.++|..+|+.+...++++.+||||||+ .+..+|.+.|+ +.+.|||+
T Consensus 120 ~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~ 199 (288)
T PRK13643 120 AEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVL 199 (288)
T ss_pred HHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence 34578899999999754568999999999999 56667776664 34689999
Q ss_pred EecCHHHHhccCCcEEEEeCCeeEEEcCChhHHH
Q psy208 166 VSHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAFD 199 (443)
Q Consensus 166 VSHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y~ 199 (443)
||||.+++..+||+|++|++|++. +.|..+++.
T Consensus 200 vtHd~~~~~~~~dri~~l~~G~i~-~~g~~~~~~ 232 (288)
T PRK13643 200 VTHLMDDVADYADYVYLLEKGHII-SCGTPSDVF 232 (288)
T ss_pred EecCHHHHHHhCCEEEEEECCEEE-EECCHHHHH
Confidence 999999999999999999999997 568877654
No 430
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.37 E-value=8.6e-12 Score=118.19 Aligned_cols=78 Identities=21% Similarity=0.318 Sum_probs=65.1
Q ss_pred HHHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------HHHHHHHHHhhh----CCCeEEE
Q psy208 116 PARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAIIWLENYLQN----WPTTLLV 165 (443)
Q Consensus 116 ~~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L~~----~~~tvii 165 (443)
+.++.++++.+|+++ ..++++.+||||||+ .+..++.+.|++ ++.|||+
T Consensus 109 ~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~ 187 (220)
T cd03265 109 RERIDELLDFVGLLE-AADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILL 187 (220)
T ss_pred HHHHHHHHHHcCCHH-HhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 347888999999975 468999999999999 566777776643 4789999
Q ss_pred EecCHHHHhccCCcEEEEeCCeeEEEcCCh
Q psy208 166 VSHDRHFLDSVPTDIFHLHSQRIDTYRGNY 195 (443)
Q Consensus 166 VSHDr~fLd~v~~~i~~l~~g~i~~~~G~y 195 (443)
||||.+++..+|++|++|++|++.. .|+.
T Consensus 188 ~tH~~~~~~~~~d~i~~l~~G~i~~-~~~~ 216 (220)
T cd03265 188 TTHYMEEAEQLCDRVAIIDHGRIIA-EGTP 216 (220)
T ss_pred EeCCHHHHHHhCCEEEEEeCCEEEE-eCCh
Confidence 9999999999999999999999964 3553
No 431
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.37 E-value=3.1e-12 Score=124.27 Aligned_cols=82 Identities=17% Similarity=0.224 Sum_probs=67.7
Q ss_pred HHHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------HHHHHHHHHhh----hCCCeEEE
Q psy208 116 PARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAIIWLENYLQ----NWPTTLLV 165 (443)
Q Consensus 116 ~~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L~----~~~~tvii 165 (443)
+.++.+++..+|+.....++++.+||||||+ .+..++.+.|+ +++.|||+
T Consensus 128 ~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~ 207 (258)
T PRK11701 128 RATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVI 207 (258)
T ss_pred HHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEE
Confidence 3467888999999754578999999999999 56777777764 34789999
Q ss_pred EecCHHHHhccCCcEEEEeCCeeEEEcCChhHH
Q psy208 166 VSHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAF 198 (443)
Q Consensus 166 VSHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y 198 (443)
||||.+++..+||+|+.|++|++. +.|..+++
T Consensus 208 isH~~~~~~~~~d~i~~l~~g~i~-~~~~~~~~ 239 (258)
T PRK11701 208 VTHDLAVARLLAHRLLVMKQGRVV-ESGLTDQV 239 (258)
T ss_pred EeCCHHHHHHhcCEEEEEECCEEE-EeCCHHHH
Confidence 999999999999999999999996 45766554
No 432
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.36 E-value=9.4e-12 Score=117.10 Aligned_cols=74 Identities=19% Similarity=0.255 Sum_probs=63.9
Q ss_pred HHHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------HHHHHHHHHhhhC--CCeEEEEe
Q psy208 116 PARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAIIWLENYLQNW--PTTLLVVS 167 (443)
Q Consensus 116 ~~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L~~~--~~tviiVS 167 (443)
+.++..++..+|+++ ..++++.+||||||+ .+..++.++|+++ +.|||+||
T Consensus 108 ~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vs 186 (211)
T cd03264 108 KARVDEVLELVNLGD-RAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILST 186 (211)
T ss_pred HHHHHHHHHHCCCHH-HHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEc
Confidence 346788899999975 468899999999999 6788888888654 58999999
Q ss_pred cCHHHHhccCCcEEEEeCCeeEE
Q psy208 168 HDRHFLDSVPTDIFHLHSQRIDT 190 (443)
Q Consensus 168 HDr~fLd~v~~~i~~l~~g~i~~ 190 (443)
||.+++.++||+++.|++|++..
T Consensus 187 H~~~~~~~~~d~i~~l~~g~i~~ 209 (211)
T cd03264 187 HIVEDVESLCNQVAVLNKGKLVF 209 (211)
T ss_pred CCHHHHHHhCCEEEEEECCEEEe
Confidence 99999999999999999999863
No 433
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.36 E-value=5.9e-12 Score=118.93 Aligned_cols=72 Identities=21% Similarity=0.313 Sum_probs=61.5
Q ss_pred HHHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------HHHHHHHHHhhhC---CCeEEEE
Q psy208 116 PARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAIIWLENYLQNW---PTTLLVV 166 (443)
Q Consensus 116 ~~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L~~~---~~tviiV 166 (443)
+.++.++++.+|+.+ ..++++.+||||||+ .+..++.+.|+++ +.|||+|
T Consensus 116 ~~~~~~~l~~~~l~~-~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~v 194 (216)
T TIGR00960 116 NERVSAALEKVGLEG-KAHALPMQLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVA 194 (216)
T ss_pred HHHHHHHHHHcCChh-hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 357888999999975 468899999999999 5777777777543 6799999
Q ss_pred ecCHHHHhccCCcEEEEeCCee
Q psy208 167 SHDRHFLDSVPTDIFHLHSQRI 188 (443)
Q Consensus 167 SHDr~fLd~v~~~i~~l~~g~i 188 (443)
|||.+++..+||+|+.|++|++
T Consensus 195 sH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 195 THDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred eCCHHHHHHhCCEEEEEeCCcC
Confidence 9999999999999999999874
No 434
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.36 E-value=6.5e-12 Score=121.66 Aligned_cols=157 Identities=18% Similarity=0.175 Sum_probs=111.9
Q ss_pred hhhhhhhhcchHHHHHHHcccccc---------CC--------------CCCcceEEecC------------CceEEEEe
Q psy208 8 TVSNSIFCFSSEFYCKALTLHLHL---------EG--------------GMVSGQLRIPS------------HISVLHVE 52 (443)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~---------~~--------------~~~~G~i~~~~------------~~~i~~l~ 52 (443)
++.|++..|++..-++.|++++.- +| .||+|.|.... .-+||++-
T Consensus 4 ~i~~~~~~~~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VGfvF 83 (345)
T COG1118 4 RINNVKKRFGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVGFVF 83 (345)
T ss_pred eehhhhhhcccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcceeEEE
Confidence 345677777776666655555432 22 15778887532 24799999
Q ss_pred cccC-CCCchHHHHHHhccHHHHHHHHHHHHHHHHHhCCCCChhhHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCCChh
Q psy208 53 QEVV-GDDTPAIDSVLECDTKRQNLLNREKTITQAINNGTADANMSTELTQVFAELEAIEADKAPARASVILAGLGFTPE 131 (443)
Q Consensus 53 Q~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~~~L~~lgl~~~ 131 (443)
|+.. +...||.+.+--+.. +. ....+..++..|+.+.|..+.++..
T Consensus 84 Q~YALF~HmtVa~NIAFGl~-~~--------------------------------~~~p~~~~~r~rv~elL~lvqL~~l 130 (345)
T COG1118 84 QHYALFPHMTVADNIAFGLK-VR--------------------------------KERPSEAEIRARVEELLRLVQLEGL 130 (345)
T ss_pred echhhcccchHHhhhhhccc-cc--------------------------------ccCCChhhHHHHHHHHHHHhcccch
Confidence 9975 356666655432210 00 0011223456789999999999853
Q ss_pred hhhccCCCCChHHHH------------------------------HHHHHHHHHhhhCCCeEEEEecCHHHHhccCCcEE
Q psy208 132 MQKRATKHFSGGWRK------------------------------MAIIWLENYLQNWPTTLLVVSHDRHFLDSVPTDIF 181 (443)
Q Consensus 132 ~~~~~~~~LSGGqr~------------------------------~~i~wL~~~L~~~~~tviiVSHDr~fLd~v~~~i~ 181 (443)
-++.+.+||||||| +-..||.+...+++.|.|+||||.++.-.+|+||+
T Consensus 131 -a~ryP~QLSGGQrQRVALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvv 209 (345)
T COG1118 131 -ADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVV 209 (345)
T ss_pred -hhcCchhcChHHHHHHHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEE
Confidence 47999999999999 45568888888899999999999999999999999
Q ss_pred EEeCCeeEEEcCChhHH
Q psy208 182 HLHSQRIDTYRGNYEAF 198 (443)
Q Consensus 182 ~l~~g~i~~~~G~y~~y 198 (443)
+|++|+|....-..+.|
T Consensus 210 vl~~G~Ieqvg~p~ev~ 226 (345)
T COG1118 210 VLNQGRIEQVGPPDEVY 226 (345)
T ss_pred EecCCeeeeeCCHHHHh
Confidence 99999998775555555
No 435
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.36 E-value=1e-11 Score=122.88 Aligned_cols=82 Identities=16% Similarity=0.192 Sum_probs=67.9
Q ss_pred HHHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------HHHHHHHHHhhh----CCCeEEE
Q psy208 116 PARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAIIWLENYLQN----WPTTLLV 165 (443)
Q Consensus 116 ~~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L~~----~~~tvii 165 (443)
..++.++|+.+|+.....++++.+||||||+ .+..++.+.|++ ++.|||+
T Consensus 122 ~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tvii 201 (290)
T PRK13634 122 KQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVL 201 (290)
T ss_pred HHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 3578889999999754568999999999999 466666666643 4789999
Q ss_pred EecCHHHHhccCCcEEEEeCCeeEEEcCChhHH
Q psy208 166 VSHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAF 198 (443)
Q Consensus 166 VSHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y 198 (443)
||||.+++..+||+|+.|++|++. +.|+.++.
T Consensus 202 itHd~~~~~~~~drv~~l~~G~i~-~~g~~~~~ 233 (290)
T PRK13634 202 VTHSMEDAARYADQIVVMHKGTVF-LQGTPREI 233 (290)
T ss_pred EeCCHHHHHHhCCEEEEEECCEEE-EECCHHHH
Confidence 999999999999999999999996 56776654
No 436
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.36 E-value=1.7e-11 Score=117.93 Aligned_cols=78 Identities=17% Similarity=0.230 Sum_probs=65.4
Q ss_pred HHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------HHHHHHHHHhhh----CCCeEEEE
Q psy208 117 ARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAIIWLENYLQN----WPTTLLVV 166 (443)
Q Consensus 117 ~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L~~----~~~tviiV 166 (443)
.++..+++.+|++....++++.+||||||+ .+..++.+.|+. .+.|||+|
T Consensus 109 ~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~ 188 (241)
T PRK14250 109 VDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWI 188 (241)
T ss_pred HHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 467788999999744568899999999999 577777777754 47899999
Q ss_pred ecCHHHHhccCCcEEEEeCCeeEEEcCC
Q psy208 167 SHDRHFLDSVPTDIFHLHSQRIDTYRGN 194 (443)
Q Consensus 167 SHDr~fLd~v~~~i~~l~~g~i~~~~G~ 194 (443)
|||.+++..+||+|+.|++|++......
T Consensus 189 sH~~~~~~~~~d~i~~l~~G~i~~~~~~ 216 (241)
T PRK14250 189 THNMEQAKRIGDYTAFLNKGILVEYAKT 216 (241)
T ss_pred eccHHHHHHhCCEEEEEeCCEEEEeCCH
Confidence 9999999999999999999999765433
No 437
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.35 E-value=1e-11 Score=116.99 Aligned_cols=73 Identities=23% Similarity=0.260 Sum_probs=63.0
Q ss_pred HHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------HHHHHHHHHhhh----CCCeEEEE
Q psy208 117 ARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAIIWLENYLQN----WPTTLLVV 166 (443)
Q Consensus 117 ~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L~~----~~~tviiV 166 (443)
.++.++++.+|+.+ ..++++.+||||||+ .+..++.+.|++ .+.|||+|
T Consensus 109 ~~~~~~l~~~~l~~-~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~ 187 (213)
T cd03259 109 ARVRELLELVGLEG-LLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYV 187 (213)
T ss_pred HHHHHHHHHcCChh-hhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEE
Confidence 46788899999985 468899999999999 677788888754 36799999
Q ss_pred ecCHHHHhccCCcEEEEeCCeeEE
Q psy208 167 SHDRHFLDSVPTDIFHLHSQRIDT 190 (443)
Q Consensus 167 SHDr~fLd~v~~~i~~l~~g~i~~ 190 (443)
|||.+++..+||+|+.|++|++..
T Consensus 188 sH~~~~~~~~~d~v~~l~~G~i~~ 211 (213)
T cd03259 188 THDQEEALALADRIAVMNEGRIVQ 211 (213)
T ss_pred ecCHHHHHHhcCEEEEEECCEEEe
Confidence 999999999999999999999863
No 438
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.35 E-value=1.4e-11 Score=122.53 Aligned_cols=81 Identities=16% Similarity=0.350 Sum_probs=70.4
Q ss_pred HHHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------HHHHHHHHHhhhC--CCeEEEEe
Q psy208 116 PARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAIIWLENYLQNW--PTTLLVVS 167 (443)
Q Consensus 116 ~~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L~~~--~~tviiVS 167 (443)
..++..++..+|+.+. .++++.+||||||+ .++.|+.+.|+.+ +.|||++|
T Consensus 111 ~~~~~~~l~~~gl~~~-~~~~~~~LS~G~~qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~s 189 (301)
T TIGR03522 111 KQRVEEMIELVGLRPE-QHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILST 189 (301)
T ss_pred HHHHHHHHHHCCCchH-hcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEc
Confidence 4578889999999854 68999999999999 6778888888655 58999999
Q ss_pred cCHHHHhccCCcEEEEeCCeeEEEcCChhHH
Q psy208 168 HDRHFLDSVPTDIFHLHSQRIDTYRGNYEAF 198 (443)
Q Consensus 168 HDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y 198 (443)
||.+.+.++||||+.|++|++. +.|+.+++
T Consensus 190 H~l~~~~~~~d~i~~l~~G~i~-~~g~~~~~ 219 (301)
T TIGR03522 190 HIMQEVEAICDRVIIINKGKIV-ADKKLDEL 219 (301)
T ss_pred CCHHHHHHhCCEEEEEECCEEE-EeCCHHHH
Confidence 9999999999999999999997 67887765
No 439
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.35 E-value=1.8e-11 Score=119.85 Aligned_cols=147 Identities=19% Similarity=0.202 Sum_probs=102.5
Q ss_pred chHHHHHHHccccc-cCCCCCcceEEec---------------CCceEEEEecccC--CCCchHHHHHHhccHHHHHHHH
Q psy208 17 SSEFYCKALTLHLH-LEGGMVSGQLRIP---------------SHISVLHVEQEVV--GDDTPAIDSVLECDTKRQNLLN 78 (443)
Q Consensus 17 ~~~~~~~~~~~~~~-~~~~~~~G~i~~~---------------~~~~i~~l~Q~~~--~~~~~~~~~~~~~~~~~~~l~~ 78 (443)
|=+++.++|-+.+. +.+.-.+|+|.+. +|-+|++++|++- +++.. .+..
T Consensus 43 GKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~p~~sLnPv~-------------~Ig~ 109 (316)
T COG0444 43 GKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVM-------------TIGD 109 (316)
T ss_pred CHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEEcCchhhcCChh-------------hHHH
Confidence 34788999999887 5555566777542 3568999999973 22221 1222
Q ss_pred HHHHHHHHHhCCCCChhhHHHHHHHHHHHhhc-ccCCHHHHHHHHHHhCCCChh--hhhccCCCCChHHHH---------
Q psy208 79 REKTITQAINNGTADANMSTELTQVFAELEAI-EADKAPARASVILAGLGFTPE--MQKRATKHFSGGWRK--------- 146 (443)
Q Consensus 79 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~rv~~~L~~lgl~~~--~~~~~~~~LSGGqr~--------- 146 (443)
++.+ ....+... ...++..++.++|+.+||++. .+++.+++|||||||
T Consensus 110 Qi~E--------------------~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQRV~IAmala 169 (316)
T COG0444 110 QIAE--------------------VLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMALA 169 (316)
T ss_pred HHHH--------------------HHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHHHHHHHHHHh
Confidence 2111 11111111 112355789999999999854 678999999999999
Q ss_pred --------------------HHHHHHHHHh-hhCCCeEEEEecCHHHHhccCCcEEEEeCCeeEEEcCChhH
Q psy208 147 --------------------MAIIWLENYL-QNWPTTLLVVSHDRHFLDSVPTDIFHLHSQRIDTYRGNYEA 197 (443)
Q Consensus 147 --------------------~~i~wL~~~L-~~~~~tviiVSHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~ 197 (443)
..|..|.+-| ++++.|+|+||||..++.++||||++|..|++..+ |+..+
T Consensus 170 ~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG~iVE~-g~~~~ 240 (316)
T COG0444 170 LNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIVEE-GPVEE 240 (316)
T ss_pred CCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECcEEEEe-CCHHH
Confidence 3344455555 45899999999999999999999999999999876 55443
No 440
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.35 E-value=1.6e-11 Score=121.24 Aligned_cols=83 Identities=14% Similarity=0.259 Sum_probs=67.9
Q ss_pred HHHHHHHHHHhCCCCh-hhhhccCCCCChHHHH--------------------------HHHHHHHHHhhh----CCCeE
Q psy208 115 APARASVILAGLGFTP-EMQKRATKHFSGGWRK--------------------------MAIIWLENYLQN----WPTTL 163 (443)
Q Consensus 115 ~~~rv~~~L~~lgl~~-~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L~~----~~~tv 163 (443)
...++.++|+.+|+.. ...++++.+||||||+ .+..+|.+.|++ .+.||
T Consensus 119 ~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tv 198 (287)
T PRK13637 119 IENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTI 198 (287)
T ss_pred HHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEE
Confidence 3457889999999972 3568999999999999 566677776643 46799
Q ss_pred EEEecCHHHHhccCCcEEEEeCCeeEEEcCChhHH
Q psy208 164 LVVSHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAF 198 (443)
Q Consensus 164 iiVSHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y 198 (443)
|+||||.+++..+||+|++|++|++.. .|....+
T Consensus 199 i~vtHd~~~~~~~~drv~~l~~G~i~~-~g~~~~~ 232 (287)
T PRK13637 199 ILVSHSMEDVAKLADRIIVMNKGKCEL-QGTPREV 232 (287)
T ss_pred EEEeCCHHHHHHhCCEEEEEECCEEEE-ECCHHHH
Confidence 999999999999999999999999974 5776654
No 441
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.34 E-value=1.6e-11 Score=121.20 Aligned_cols=82 Identities=13% Similarity=0.250 Sum_probs=68.3
Q ss_pred HHHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------HHHHHHHHHhhhC---CCeEEEE
Q psy208 116 PARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAIIWLENYLQNW---PTTLLVV 166 (443)
Q Consensus 116 ~~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L~~~---~~tviiV 166 (443)
..++.++|..+|+.....++++.+||||||+ .+..++.+.|+++ +.|||+|
T Consensus 122 ~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvliv 201 (287)
T PRK13641 122 KEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILV 201 (287)
T ss_pred HHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 3578889999999744568999999999999 5777777777543 5799999
Q ss_pred ecCHHHHhccCCcEEEEeCCeeEEEcCChhHH
Q psy208 167 SHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAF 198 (443)
Q Consensus 167 SHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y 198 (443)
|||.+++..+||+|+.|++|++. ..|..+.+
T Consensus 202 sH~~~~~~~~~d~v~~l~~G~i~-~~g~~~~~ 232 (287)
T PRK13641 202 THNMDDVAEYADDVLVLEHGKLI-KHASPKEI 232 (287)
T ss_pred eCCHHHHHHhCCEEEEEECCEEE-EeCCHHHH
Confidence 99999999999999999999986 45776654
No 442
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.34 E-value=1.7e-11 Score=115.51 Aligned_cols=75 Identities=21% Similarity=0.256 Sum_probs=63.5
Q ss_pred HHHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------HHHHHHHHHhhh----CCCeEEE
Q psy208 116 PARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAIIWLENYLQN----WPTTLLV 165 (443)
Q Consensus 116 ~~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L~~----~~~tvii 165 (443)
+.++..++..+|+.+ ..++++.+||||||+ .+..++.+.|++ .+.|||+
T Consensus 108 ~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~ 186 (213)
T cd03301 108 DERVREVAELLQIEH-LLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIY 186 (213)
T ss_pred HHHHHHHHHHcCCHH-HHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 346788899999974 468999999999999 567777777743 4789999
Q ss_pred EecCHHHHhccCCcEEEEeCCeeEEE
Q psy208 166 VSHDRHFLDSVPTDIFHLHSQRIDTY 191 (443)
Q Consensus 166 VSHDr~fLd~v~~~i~~l~~g~i~~~ 191 (443)
||||.+++..+|++|+.|++|++..+
T Consensus 187 ~sH~~~~~~~~~d~i~~l~~g~~~~~ 212 (213)
T cd03301 187 VTHDQVEAMTMADRIAVMNDGQIQQI 212 (213)
T ss_pred EeCCHHHHHHhcCeEEEEECCEEEec
Confidence 99999999999999999999998754
No 443
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.33 E-value=1.7e-11 Score=115.23 Aligned_cols=74 Identities=14% Similarity=0.268 Sum_probs=63.3
Q ss_pred HHHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------HHHHHHHHHhhhC---CCeEEEE
Q psy208 116 PARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAIIWLENYLQNW---PTTLLVV 166 (443)
Q Consensus 116 ~~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L~~~---~~tviiV 166 (443)
+.++.++++.+|++. ..++++.+||||||+ .+..++.+.|+++ +.|||+|
T Consensus 106 ~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrl~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~ 184 (210)
T cd03269 106 RRRIDEWLERLELSE-YANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILS 184 (210)
T ss_pred HHHHHHHHHHcCChH-HHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 346888899999974 467899999999999 5777888877543 5799999
Q ss_pred ecCHHHHhccCCcEEEEeCCeeEE
Q psy208 167 SHDRHFLDSVPTDIFHLHSQRIDT 190 (443)
Q Consensus 167 SHDr~fLd~v~~~i~~l~~g~i~~ 190 (443)
|||.+++..+||+|+.|++|++..
T Consensus 185 sH~~~~~~~~~d~i~~l~~g~i~~ 208 (210)
T cd03269 185 THQMELVEELCDRVLLLNKGRAVL 208 (210)
T ss_pred CCCHHHHHHhhhEEEEEeCCEEEe
Confidence 999999999999999999999864
No 444
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.33 E-value=2.3e-11 Score=120.06 Aligned_cols=83 Identities=18% Similarity=0.247 Sum_probs=68.8
Q ss_pred HHHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------HHHHHHHHHhhh----CCCeEEE
Q psy208 116 PARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAIIWLENYLQN----WPTTLLV 165 (443)
Q Consensus 116 ~~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L~~----~~~tvii 165 (443)
..++.++|..+|+.....++++.+||||||+ .+..++.+.|++ .+.|||+
T Consensus 122 ~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~ 201 (286)
T PRK13646 122 KNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIIL 201 (286)
T ss_pred HHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 4578889999999744568899999999999 577777777753 3679999
Q ss_pred EecCHHHHhccCCcEEEEeCCeeEEEcCChhHHH
Q psy208 166 VSHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAFD 199 (443)
Q Consensus 166 VSHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y~ 199 (443)
||||.+++..+||+|++|++|++. +.|...+..
T Consensus 202 vtH~~~~~~~~~dri~~l~~G~i~-~~g~~~~~~ 234 (286)
T PRK13646 202 VSHDMNEVARYADEVIVMKEGSIV-SQTSPKELF 234 (286)
T ss_pred EecCHHHHHHhCCEEEEEECCEEE-EECCHHHHH
Confidence 999999999999999999999997 457766643
No 445
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.33 E-value=6.1e-12 Score=118.14 Aligned_cols=161 Identities=17% Similarity=0.126 Sum_probs=117.3
Q ss_pred cchhhhhhhhhhcchHHHHHHHcccccc---------CC--------------CCCcceEEecC--------------Cc
Q psy208 4 QRVNTVSNSIFCFSSEFYCKALTLHLHL---------EG--------------GMVSGQLRIPS--------------HI 46 (443)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~--------------~~~~G~i~~~~--------------~~ 46 (443)
+.+=++.++++.||..++++.+++.+.. .| .|++|+|.+-+ .-
T Consensus 6 ~~~I~vr~v~~~fG~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~ 85 (263)
T COG1127 6 EPLIEVRGVTKSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRK 85 (263)
T ss_pred cceEEEeeeeeecCCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHh
Confidence 5566788999999999888888887766 11 26889997631 12
Q ss_pred eEEEEecccC-CCCchHHHHHHhccHHHHHHHHHHHHHHHHHhCCCCChhhHHHHHHHHHHHhhcccCCHHHHHHHHHHh
Q psy208 47 SVLHVEQEVV-GDDTPAIDSVLECDTKRQNLLNREKTITQAINNGTADANMSTELTQVFAELEAIEADKAPARASVILAG 125 (443)
Q Consensus 47 ~i~~l~Q~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~~~L~~ 125 (443)
++|++.|.-. +++.||++-|.-- +.++..+....++..+..-|+.
T Consensus 86 r~GvlFQ~gALFssltV~eNVafp----------------------------------lre~~~lp~~~i~~lv~~KL~~ 131 (263)
T COG1127 86 RMGVLFQQGALFSSLTVFENVAFP----------------------------------LREHTKLPESLIRELVLMKLEL 131 (263)
T ss_pred heeEEeeccccccccchhHhhhee----------------------------------hHhhccCCHHHHHHHHHHHHHh
Confidence 4888888754 3555665544210 0111112222344456667888
Q ss_pred CCCChhhhhccCCCCChHHHH-----------------------------HHHHHHHHHhh-hCCCeEEEEecCHHHHhc
Q psy208 126 LGFTPEMQKRATKHFSGGWRK-----------------------------MAIIWLENYLQ-NWPTTLLVVSHDRHFLDS 175 (443)
Q Consensus 126 lgl~~~~~~~~~~~LSGGqr~-----------------------------~~i~wL~~~L~-~~~~tviiVSHDr~fLd~ 175 (443)
+|++....++.+++||||+++ ..+.-|..-|+ +.+.|+|+||||.+-+..
T Consensus 132 VGL~~~~~~~~PsELSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~ 211 (263)
T COG1127 132 VGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLT 211 (263)
T ss_pred cCCChhhhhhCchhhcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHh
Confidence 999976678999999999998 46667777774 578999999999999999
Q ss_pred cCCcEEEEeCCeeEEEcCChhHHH
Q psy208 176 VPTDIFHLHSQRIDTYRGNYEAFD 199 (443)
Q Consensus 176 v~~~i~~l~~g~i~~~~G~y~~y~ 199 (443)
+||+|+.|.+|++. +.|.+++..
T Consensus 212 i~Drv~~L~~gkv~-~~Gt~~el~ 234 (263)
T COG1127 212 IADRVAVLADGKVI-AEGTPEELL 234 (263)
T ss_pred hhceEEEEeCCEEE-EeCCHHHHH
Confidence 99999999999996 679987764
No 446
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.33 E-value=1.8e-11 Score=120.07 Aligned_cols=81 Identities=19% Similarity=0.236 Sum_probs=67.0
Q ss_pred HHHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------HHHHHHHHHhhh---CCCeEEEE
Q psy208 116 PARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAIIWLENYLQN---WPTTLLVV 166 (443)
Q Consensus 116 ~~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L~~---~~~tviiV 166 (443)
+.++..+|..+|+.+ ..++++.+||||||+ .+..++.+.|++ .+.|||+|
T Consensus 116 ~~~~~~~l~~~~L~~-~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~ 194 (274)
T PRK13647 116 ERRVEEALKAVRMWD-FRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVA 194 (274)
T ss_pred HHHHHHHHHHCCCHH-HhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 357888999999974 578999999999999 566677777643 36899999
Q ss_pred ecCHHHHhccCCcEEEEeCCeeEEEcCChhHH
Q psy208 167 SHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAF 198 (443)
Q Consensus 167 SHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y 198 (443)
|||.+++.++||+|+.|++|++.. .|..+.+
T Consensus 195 tH~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~ 225 (274)
T PRK13647 195 THDVDLAAEWADQVIVLKEGRVLA-EGDKSLL 225 (274)
T ss_pred eCCHHHHHHhCCEEEEEECCEEEE-ECCHHHh
Confidence 999999999999999999999964 5666544
No 447
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.33 E-value=1.4e-11 Score=116.12 Aligned_cols=51 Identities=20% Similarity=0.251 Sum_probs=44.7
Q ss_pred cCCCCCHH--HHHHHHHHHHhccCCCeEEEeCCC-----CCCCHHHHHHHHHHHcccc
Q psy208 392 FVGSLSGG--QKSRVAFARMCMAAPNFLVLDEPT-----NHLDIETIEALGKAINKYT 442 (443)
Q Consensus 392 ~~~~LSgG--ekqRl~lA~al~~~p~lLiLDEPT-----n~LD~~s~~~l~~~L~~~~ 442 (443)
..+..||+ +++++.||++++.+|++++||||| ++||+.+++.+.+.|.++.
T Consensus 147 e~Sa~~~~~v~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~ 204 (215)
T PTZ00132 147 DISAKSNYNFEKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAA 204 (215)
T ss_pred EEeCCCCCCHHHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHh
Confidence 34455555 999999999999999999999999 9999999999999998763
No 448
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.33 E-value=2.4e-11 Score=122.83 Aligned_cols=82 Identities=13% Similarity=0.250 Sum_probs=68.0
Q ss_pred HHHHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------HHHHHHHHHhhh----CCCeEE
Q psy208 115 APARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAIIWLENYLQN----WPTTLL 164 (443)
Q Consensus 115 ~~~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L~~----~~~tvi 164 (443)
.+.|+.++|+.+|+.+ ..++++.+||||||| .+..++.+.|++ .+.|||
T Consensus 117 ~~~~v~e~l~~vgL~~-~~~~~~~~LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tii 195 (343)
T TIGR02314 117 IKRKVTELLALVGLGD-KHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTIL 195 (343)
T ss_pred HHHHHHHHHHHcCCch-hhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEE
Confidence 3457889999999985 468999999999999 455666666543 478999
Q ss_pred EEecCHHHHhccCCcEEEEeCCeeEEEcCChhHH
Q psy208 165 VVSHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAF 198 (443)
Q Consensus 165 iVSHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y 198 (443)
+||||.+++.++||+|+.|++|++.. .|+.++.
T Consensus 196 liTH~~~~v~~~~d~v~vl~~G~iv~-~g~~~~v 228 (343)
T TIGR02314 196 LITHEMDVVKRICDCVAVISNGELIE-QGTVSEI 228 (343)
T ss_pred EEeCCHHHHHHhCCEEEEEECCEEEE-EcCHHHH
Confidence 99999999999999999999999974 5776655
No 449
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.33 E-value=1.4e-11 Score=118.52 Aligned_cols=139 Identities=20% Similarity=0.199 Sum_probs=94.5
Q ss_pred HHHHHHHccccccCCCCCcceEEecC-----------CceEEEEecccCC-CCchHHHHHHhccHHHHHHHHHHHHHHHH
Q psy208 19 EFYCKALTLHLHLEGGMVSGQLRIPS-----------HISVLHVEQEVVG-DDTPAIDSVLECDTKRQNLLNREKTITQA 86 (443)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~G~i~~~~-----------~~~i~~l~Q~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~l~~~ 86 (443)
++|.+.+++.+.| .+|+|...+ .-+++|+||.+.. ...+|.+.|..+.......
T Consensus 42 STLLk~l~g~l~p----~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~---------- 107 (258)
T COG1120 42 STLLKCLAGLLKP----KSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGL---------- 107 (258)
T ss_pred HHHHHHHhccCCC----CCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCccccc----------
Confidence 3444444444444 448887542 1279999999754 4567877776553211000
Q ss_pred HhCCCCChhhHHHHHHHHHHHhhcccCC--HHHHHHHHHHhCCCChhhhhccCCCCChHHHH------------------
Q psy208 87 INNGTADANMSTELTQVFAELEAIEADK--APARASVILAGLGFTPEMQKRATKHFSGGWRK------------------ 146 (443)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~------------------ 146 (443)
+..|. -++.+.++|+.+|+.+ ..+|++.+|||||||
T Consensus 108 -----------------------~~~~~~~D~~~v~~aL~~~~~~~-la~r~~~~LSGGerQrv~iArALaQ~~~iLLLD 163 (258)
T COG1120 108 -----------------------FGRPSKEDEEIVEEALELLGLEH-LADRPVDELSGGERQRVLIARALAQETPILLLD 163 (258)
T ss_pred -----------------------ccCCCHhHHHHHHHHHHHhCcHH-HhcCcccccChhHHHHHHHHHHHhcCCCEEEeC
Confidence 00111 1236888999999986 468999999999999
Q ss_pred -----------HHHHHHHHHh-hhCCCeEEEEecCHHHHhccCCcEEEEeCCeeEEEcCChh
Q psy208 147 -----------MAIIWLENYL-QNWPTTLLVVSHDRHFLDSVPTDIFHLHSQRIDTYRGNYE 196 (443)
Q Consensus 147 -----------~~i~wL~~~L-~~~~~tviiVSHDr~fLd~v~~~i~~l~~g~i~~~~G~y~ 196 (443)
-.+.-|...| ++.+.|||+|.||..+....||+++.|++|++.. .|...
T Consensus 164 EPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a-~G~p~ 224 (258)
T COG1120 164 EPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVA-QGTPE 224 (258)
T ss_pred CCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEe-ecCcc
Confidence 1233344444 4668999999999999999999999999999975 56654
No 450
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.32 E-value=2.8e-11 Score=116.46 Aligned_cols=82 Identities=23% Similarity=0.314 Sum_probs=67.6
Q ss_pred HHHHHHHHHhCCCCh-hhhhccCCCCChHHHH--------------------------HHHHHHHHHhhh----CCCeEE
Q psy208 116 PARASVILAGLGFTP-EMQKRATKHFSGGWRK--------------------------MAIIWLENYLQN----WPTTLL 164 (443)
Q Consensus 116 ~~rv~~~L~~lgl~~-~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L~~----~~~tvi 164 (443)
..++.++++.+|+.. ...++++.+||||||+ .+..++.+.|++ .+.|||
T Consensus 111 ~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvi 190 (242)
T cd03295 111 RERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIV 190 (242)
T ss_pred HHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 357888999999985 3568999999999999 567777777754 367999
Q ss_pred EEecCHHHHhccCCcEEEEeCCeeEEEcCChhHH
Q psy208 165 VVSHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAF 198 (443)
Q Consensus 165 iVSHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y 198 (443)
+||||.+++..+||+|+.|++|++.. .|..+.+
T Consensus 191 i~sH~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~ 223 (242)
T cd03295 191 FVTHDIDEAFRLADRIAIMKNGEIVQ-VGTPDEI 223 (242)
T ss_pred EEecCHHHHHHhCCEEEEEECCEEEE-ecCHHHH
Confidence 99999999999999999999999964 4665544
No 451
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.32 E-value=1.7e-11 Score=115.87 Aligned_cols=74 Identities=23% Similarity=0.331 Sum_probs=62.9
Q ss_pred HHHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------HHHHHHHHHhhhC---CCeEEEE
Q psy208 116 PARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAIIWLENYLQNW---PTTLLVV 166 (443)
Q Consensus 116 ~~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L~~~---~~tviiV 166 (443)
..++.++++.+|+++ ..++++.+||||||+ .+..++.++|+++ +.|||+|
T Consensus 114 ~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~ 192 (218)
T cd03266 114 TARLEELADRLGMEE-LLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFS 192 (218)
T ss_pred HHHHHHHHHHcCCHH-HHhhhhhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 357788899999974 468899999999999 5667777777543 6799999
Q ss_pred ecCHHHHhccCCcEEEEeCCeeEE
Q psy208 167 SHDRHFLDSVPTDIFHLHSQRIDT 190 (443)
Q Consensus 167 SHDr~fLd~v~~~i~~l~~g~i~~ 190 (443)
|||.+++..+||+|+.|++|++..
T Consensus 193 tH~~~~~~~~~d~i~~l~~G~i~~ 216 (218)
T cd03266 193 THIMQEVERLCDRVVVLHRGRVVY 216 (218)
T ss_pred eCCHHHHHHhcCEEEEEECCEEee
Confidence 999999999999999999999864
No 452
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.32 E-value=2.3e-11 Score=122.86 Aligned_cols=80 Identities=18% Similarity=0.152 Sum_probs=67.1
Q ss_pred HHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------HHHHHHHHHhhh---CCCeEEEEe
Q psy208 117 ARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAIIWLENYLQN---WPTTLLVVS 167 (443)
Q Consensus 117 ~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L~~---~~~tviiVS 167 (443)
.++..+++.+|+++ ..++++.+||||||+ .+..++.++|++ .+.|||++|
T Consensus 151 ~~~~~ll~~~~L~~-~~~~~~~~LS~G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisS 229 (340)
T PRK13536 151 AVIPSLLEFARLES-KADARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTT 229 (340)
T ss_pred HHHHHHHHHcCCch-hhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 46777888899985 468999999999999 567777777754 378999999
Q ss_pred cCHHHHhccCCcEEEEeCCeeEEEcCChhHH
Q psy208 168 HDRHFLDSVPTDIFHLHSQRIDTYRGNYEAF 198 (443)
Q Consensus 168 HDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y 198 (443)
||.+.+.++||+|+.|++|++. +.|..+..
T Consensus 230 H~l~e~~~~~d~i~il~~G~i~-~~g~~~~l 259 (340)
T PRK13536 230 HFMEEAERLCDRLCVLEAGRKI-AEGRPHAL 259 (340)
T ss_pred CCHHHHHHhCCEEEEEECCEEE-EEcCHHHH
Confidence 9999999999999999999996 56776654
No 453
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.32 E-value=3.3e-11 Score=115.16 Aligned_cols=82 Identities=21% Similarity=0.265 Sum_probs=67.4
Q ss_pred HHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------HHHHHHHHHh----hhCCCeEEEE
Q psy208 117 ARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAIIWLENYL----QNWPTTLLVV 166 (443)
Q Consensus 117 ~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L----~~~~~tviiV 166 (443)
.++.++++.+|+.+ ..++++.+||||||+ .+...+.++| ++.+.|||+|
T Consensus 108 ~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~ 186 (232)
T PRK10771 108 EKLHAIARQMGIED-LLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMV 186 (232)
T ss_pred HHHHHHHHHcCcHH-HHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 56888999999974 578999999999999 4554555544 3347799999
Q ss_pred ecCHHHHhccCCcEEEEeCCeeEEEcCChhHHHH
Q psy208 167 SHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAFDK 200 (443)
Q Consensus 167 SHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y~~ 200 (443)
|||.+++..+||+|+.|++|++. +.|+++++..
T Consensus 187 sH~~~~~~~~~d~i~~l~~g~i~-~~g~~~~~~~ 219 (232)
T PRK10771 187 SHSLEDAARIAPRSLVVADGRIA-WDGPTDELLS 219 (232)
T ss_pred ECCHHHHHHhCCEEEEEECCEEE-EeCCHHHHHh
Confidence 99999999999999999999996 5688877643
No 454
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.32 E-value=3e-11 Score=121.49 Aligned_cols=146 Identities=15% Similarity=0.169 Sum_probs=97.3
Q ss_pred chHHHHHHHccccccCCCCCcceEEecCC---------------ceEEEEecccC--CCC-chHHHHHHhccHHHHHHHH
Q psy208 17 SSEFYCKALTLHLHLEGGMVSGQLRIPSH---------------ISVLHVEQEVV--GDD-TPAIDSVLECDTKRQNLLN 78 (443)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~G~i~~~~~---------------~~i~~l~Q~~~--~~~-~~~~~~~~~~~~~~~~l~~ 78 (443)
|=++|.+.+.|.+.|.+.+++|+|.+.+. -.|+|++|++. ... .++.+.+...
T Consensus 45 GKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~--------- 115 (326)
T PRK11022 45 GKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEA--------- 115 (326)
T ss_pred hHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHH---------
Confidence 34688888888887666677898876421 14999999973 222 2322221110
Q ss_pred HHHHHHHHHhCCCCChhhHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCCCh--hhhhccCCCCChHHHH----------
Q psy208 79 REKTITQAINNGTADANMSTELTQVFAELEAIEADKAPARASVILAGLGFTP--EMQKRATKHFSGGWRK---------- 146 (443)
Q Consensus 79 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~~~L~~lgl~~--~~~~~~~~~LSGGqr~---------- 146 (443)
+ ..+......+...++.++|+.+|+++ ..+++.+++|||||||
T Consensus 116 --------l-----------------~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv~iArAL~~ 170 (326)
T PRK11022 116 --------I-----------------KVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRVMIAMAIAC 170 (326)
T ss_pred --------H-----------------HHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHh
Confidence 0 00000011123457889999999974 3568899999999999
Q ss_pred ----------------H----HHHHHHHHhhhCCCeEEEEecCHHHHhccCCcEEEEeCCeeEEEcCChhH
Q psy208 147 ----------------M----AIIWLENYLQNWPTTLLVVSHDRHFLDSVPTDIFHLHSQRIDTYRGNYEA 197 (443)
Q Consensus 147 ----------------~----~i~wL~~~L~~~~~tviiVSHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~ 197 (443)
. -+.+|.++-++.+.|+|+||||..++..+||+|++|.+|++... |+..+
T Consensus 171 ~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive~-g~~~~ 240 (326)
T PRK11022 171 RPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVET-GKAHD 240 (326)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE-CCHHH
Confidence 2 22334443334678999999999999999999999999999764 66444
No 455
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.31 E-value=2.1e-11 Score=114.32 Aligned_cols=71 Identities=21% Similarity=0.404 Sum_probs=61.9
Q ss_pred HHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------HHHHHHHHHhhhC---CCeEEEEe
Q psy208 117 ARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAIIWLENYLQNW---PTTLLVVS 167 (443)
Q Consensus 117 ~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L~~~---~~tviiVS 167 (443)
.++.++++.+|+.+ ..++++.+||||||+ .+..++.++|+++ +.|||+||
T Consensus 105 ~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~s 183 (205)
T cd03226 105 EQAETVLKDLDLYA-LKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVIT 183 (205)
T ss_pred HHHHHHHHHcCCch-hcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEe
Confidence 57888999999985 468999999999999 5777888877544 67999999
Q ss_pred cCHHHHhccCCcEEEEeCCee
Q psy208 168 HDRHFLDSVPTDIFHLHSQRI 188 (443)
Q Consensus 168 HDr~fLd~v~~~i~~l~~g~i 188 (443)
||.+++..+||+|+.|++|++
T Consensus 184 H~~~~~~~~~d~i~~l~~G~i 204 (205)
T cd03226 184 HDYEFLAKVCDRVLLLANGAI 204 (205)
T ss_pred CCHHHHHHhCCEEEEEECCEE
Confidence 999999999999999999986
No 456
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=99.31 E-value=3.4e-12 Score=120.91 Aligned_cols=112 Identities=22% Similarity=0.268 Sum_probs=70.0
Q ss_pred CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCC-CCCceEEEcCceEEEEeccCcccccccchhHHHHHHHhCC
Q psy208 290 KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIIS-PTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEAAFP 368 (443)
Q Consensus 290 ~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~-p~~G~i~~~~~~~ig~~~Q~~~~~l~~~~~~~~~~~~~~~ 368 (443)
..+.+|++|++.+ ++++|+||||||||||||+|++..- ...|.........++|+++-. ..
T Consensus 18 ~~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l~~~g~~vp~~~~~i~~~~~i~-----~~------------ 79 (216)
T cd03284 18 PFVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALLAQIGSFVPASKAEIGVVDRIF-----TR------------ 79 (216)
T ss_pred ceEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHHhccCCeeccccceecceeeEe-----cc------------
Confidence 4588899999887 8999999999999999999986431 123332222223444443210 00
Q ss_pred CCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHH----HHHHHHh--ccCCCeEEEeCC---CCCCCHHHH-HHHHHHH
Q psy208 369 GKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSR----VAFARMC--MAAPNFLVLDEP---TNHLDIETI-EALGKAI 438 (443)
Q Consensus 369 ~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqR----l~lA~al--~~~p~lLiLDEP---Tn~LD~~s~-~~l~~~L 438 (443)
++. ..++|.|+.+. +.|+.++ +.+|.++||||| |+++|..+. ..+.+.|
T Consensus 80 -------------~~~--------~~~ls~g~s~f~~e~~~l~~~l~~~~~~~llllDEp~~gt~~lD~~~~~~~il~~l 138 (216)
T cd03284 80 -------------IGA--------SDDLAGGRSTFMVEMVETANILNNATERSLVLLDEIGRGTSTYDGLSIAWAIVEYL 138 (216)
T ss_pred -------------CCc--------hhhhccCcchHHHHHHHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHH
Confidence 111 11344444332 2344444 579999999999 999998763 5555555
Q ss_pred cc
Q psy208 439 NK 440 (443)
Q Consensus 439 ~~ 440 (443)
.+
T Consensus 139 ~~ 140 (216)
T cd03284 139 HE 140 (216)
T ss_pred Hh
Confidence 44
No 457
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.31 E-value=3.1e-11 Score=116.53 Aligned_cols=80 Identities=24% Similarity=0.349 Sum_probs=66.9
Q ss_pred HHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------HHHHHHHHHhhh---CCCeEEEEe
Q psy208 117 ARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAIIWLENYLQN---WPTTLLVVS 167 (443)
Q Consensus 117 ~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L~~---~~~tviiVS 167 (443)
.++.+++..+|+.. ..++++.+||||||+ .+..++.++|++ .+.|||+||
T Consensus 123 ~~~~~~l~~~gl~~-~~~~~~~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~t 201 (250)
T PRK11264 123 ARARELLAKVGLAG-KETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVT 201 (250)
T ss_pred HHHHHHHHHcCCcc-hhhCChhhCChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 46778889999974 468899999999999 577788777743 467999999
Q ss_pred cCHHHHhccCCcEEEEeCCeeEEEcCChhHH
Q psy208 168 HDRHFLDSVPTDIFHLHSQRIDTYRGNYEAF 198 (443)
Q Consensus 168 HDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y 198 (443)
||.+++..+||+|++|++|++. +.|+.+++
T Consensus 202 H~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~ 231 (250)
T PRK11264 202 HEMSFARDVADRAIFMDQGRIV-EQGPAKAL 231 (250)
T ss_pred CCHHHHHHhcCEEEEEECCEEE-EeCCHHHH
Confidence 9999999999999999999986 45776655
No 458
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.31 E-value=3.2e-11 Score=115.83 Aligned_cols=81 Identities=20% Similarity=0.305 Sum_probs=68.2
Q ss_pred HHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------HHHHHHHHHhhh---CCCeEEEEe
Q psy208 117 ARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAIIWLENYLQN---WPTTLLVVS 167 (443)
Q Consensus 117 ~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L~~---~~~tviiVS 167 (443)
.++.++++.+|+++ .+++++.+||||||+ .+..++.++|++ .+.|||+||
T Consensus 115 ~~~~~~l~~~gl~~-~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~s 193 (240)
T PRK09493 115 KQARELLAKVGLAE-RAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVT 193 (240)
T ss_pred HHHHHHHHHcCChH-HHhcChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 46788899999974 468999999999999 577777777743 368999999
Q ss_pred cCHHHHhccCCcEEEEeCCeeEEEcCChhHHH
Q psy208 168 HDRHFLDSVPTDIFHLHSQRIDTYRGNYEAFD 199 (443)
Q Consensus 168 HDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y~ 199 (443)
||.+++..+||+|+.|++|++. +.|+++++.
T Consensus 194 H~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~ 224 (240)
T PRK09493 194 HEIGFAEKVASRLIFIDKGRIA-EDGDPQVLI 224 (240)
T ss_pred CCHHHHHHhCCEEEEEECCEEE-eeCCHHHHh
Confidence 9999999999999999999996 568877653
No 459
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.31 E-value=3.8e-11 Score=122.73 Aligned_cols=81 Identities=20% Similarity=0.274 Sum_probs=65.4
Q ss_pred HHHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------HHHHHHHHHh----hhCCCeEEE
Q psy208 116 PARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAIIWLENYL----QNWPTTLLV 165 (443)
Q Consensus 116 ~~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L----~~~~~tvii 165 (443)
..++.++|+.+|+.+ ..++++.+||||||| .+..++.+.| ++.+.|+|+
T Consensus 111 ~~~~~~~l~~lgL~~-~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~ 189 (369)
T PRK11000 111 NQRVNQVAEVLQLAH-LLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIY 189 (369)
T ss_pred HHHHHHHHHHcCChh-hhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEE
Confidence 457888999999975 468999999999999 4445555544 345789999
Q ss_pred EecCHHHHhccCCcEEEEeCCeeEEEcCChhHH
Q psy208 166 VSHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAF 198 (443)
Q Consensus 166 VSHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y 198 (443)
||||.+++..+||+|++|++|++..+ |..++.
T Consensus 190 vTHd~~~~~~~~d~i~vl~~G~i~~~-g~~~~i 221 (369)
T PRK11000 190 VTHDQVEAMTLADKIVVLDAGRVAQV-GKPLEL 221 (369)
T ss_pred EeCCHHHHHHhCCEEEEEECCEEEEE-cCHHHH
Confidence 99999999999999999999999754 665443
No 460
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.31 E-value=2.9e-11 Score=118.30 Aligned_cols=80 Identities=21% Similarity=0.300 Sum_probs=65.5
Q ss_pred HHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------HHHHHHHHHhhh----CCCeEEEE
Q psy208 117 ARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAIIWLENYLQN----WPTTLLVV 166 (443)
Q Consensus 117 ~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L~~----~~~tviiV 166 (443)
.++..+|..+|+.. ..++++.+||||||+ .+..++.+.|++ .+.|||+|
T Consensus 122 ~~~~~~l~~~gl~~-~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiiv 200 (269)
T PRK11831 122 STVMMKLEAVGLRG-AAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVV 200 (269)
T ss_pred HHHHHHHHHcCChh-hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEE
Confidence 46777889999975 468899999999999 466666666643 36799999
Q ss_pred ecCHHHHhccCCcEEEEeCCeeEEEcCChhHH
Q psy208 167 SHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAF 198 (443)
Q Consensus 167 SHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y 198 (443)
|||++++..+||+|++|++|++. +.|..+++
T Consensus 201 sH~~~~~~~~~d~v~~l~~G~i~-~~g~~~~~ 231 (269)
T PRK11831 201 SHDVPEVLSIADHAYIVADKKIV-AHGSAQAL 231 (269)
T ss_pred ecCHHHHHHhhCEEEEEECCEEE-EeCCHHHH
Confidence 99999999999999999999986 45776654
No 461
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.31 E-value=3.6e-11 Score=117.52 Aligned_cols=83 Identities=12% Similarity=0.181 Sum_probs=69.4
Q ss_pred HHHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------HHHHHHHHHhhh----CCCeEEE
Q psy208 116 PARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAIIWLENYLQN----WPTTLLV 165 (443)
Q Consensus 116 ~~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L~~----~~~tvii 165 (443)
+.++..+++.+|+.+...++++.+||||||+ .+..++.+.|++ .+.|||+
T Consensus 126 ~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii 205 (267)
T PRK15112 126 EKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIY 205 (267)
T ss_pred HHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEE
Confidence 3467889999999644567889999999999 577777777754 4679999
Q ss_pred EecCHHHHhccCCcEEEEeCCeeEEEcCChhHHH
Q psy208 166 VSHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAFD 199 (443)
Q Consensus 166 VSHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y~ 199 (443)
||||.+++..+||+|+.|++|++. ..|.++++.
T Consensus 206 vsH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~ 238 (267)
T PRK15112 206 VTQHLGMMKHISDQVLVMHQGEVV-ERGSTADVL 238 (267)
T ss_pred EeCCHHHHHHhcCEEEEEECCEEE-ecCCHHHHh
Confidence 999999999999999999999996 568877664
No 462
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.31 E-value=3.8e-11 Score=122.11 Aligned_cols=142 Identities=14% Similarity=0.153 Sum_probs=101.6
Q ss_pred chHHHHHHHccccccCCCCCcceEEecC---------------CceEEEEecccCC-CCchHHHHHHhccHHHHHHHHHH
Q psy208 17 SSEFYCKALTLHLHLEGGMVSGQLRIPS---------------HISVLHVEQEVVG-DDTPAIDSVLECDTKRQNLLNRE 80 (443)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~G~i~~~~---------------~~~i~~l~Q~~~~-~~~~~~~~~~~~~~~~~~l~~~~ 80 (443)
|=++|.+.|.|.+.|++ |+|.+.. .-.++|++|++.. ...|+.+.+.... +
T Consensus 31 GKSTLLr~L~Gl~~p~~----G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~~TV~eNi~~~~--------~- 97 (363)
T TIGR01186 31 GKSTTVRMLNRLIEPTA----GQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPHMTILQNTSLGP--------E- 97 (363)
T ss_pred hHHHHHHHHhCCCCCCc----eEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCCCCHHHHHHHHH--------H-
Confidence 45788899999888766 7877532 1269999999865 3456654332110 0
Q ss_pred HHHHHHHhCCCCChhhHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCCChhhhhccCCCCChHHHH--------------
Q psy208 81 KTITQAINNGTADANMSTELTQVFAELEAIEADKAPARASVILAGLGFTPEMQKRATKHFSGGWRK-------------- 146 (443)
Q Consensus 81 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~-------------- 146 (443)
+ ..+...+...++.++|+.+|++. ..++++.+|||||||
T Consensus 98 ------~--------------------~~~~~~~~~~~~~~~l~~vgL~~-~~~~~p~~LSGGq~QRV~lARAL~~~p~i 150 (363)
T TIGR01186 98 ------L--------------------LGWPEQERKEKALELLKLVGLEE-YEHRYPDELSGGMQQRVGLARALAAEPDI 150 (363)
T ss_pred ------H--------------------cCCCHHHHHHHHHHHHHhcCCch-hhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 0 00111123457889999999974 578999999999999
Q ss_pred ------------HHHHHHHHHhh----hCCCeEEEEecCHHHHhccCCcEEEEeCCeeEEEcCChhHHH
Q psy208 147 ------------MAIIWLENYLQ----NWPTTLLVVSHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAFD 199 (443)
Q Consensus 147 ------------~~i~wL~~~L~----~~~~tviiVSHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y~ 199 (443)
.+..++.+.|. ..+.|||+||||.+++..+||+|+.|++|++.. .|..+++.
T Consensus 151 LLlDEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~-~g~~~ei~ 218 (363)
T TIGR01186 151 LLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQ-VGTPDEIL 218 (363)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEe-eCCHHHHH
Confidence 45666666653 347899999999999999999999999999864 57766553
No 463
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.31 E-value=2.9e-11 Score=115.74 Aligned_cols=81 Identities=21% Similarity=0.294 Sum_probs=67.5
Q ss_pred HHHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------HHHHHHHHHhhh---CCCeEEEE
Q psy208 116 PARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAIIWLENYLQN---WPTTLLVV 166 (443)
Q Consensus 116 ~~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L~~---~~~tviiV 166 (443)
..++.++++.+|++. ..++++.+||||||+ .+..++.++|++ .+.|||+|
T Consensus 121 ~~~~~~~l~~~~l~~-~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~v 199 (236)
T cd03219 121 RERAEELLERVGLAD-LADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLV 199 (236)
T ss_pred HHHHHHHHHHcCccc-hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 346888899999975 468999999999999 577777777754 46799999
Q ss_pred ecCHHHHhccCCcEEEEeCCeeEEEcCChhHH
Q psy208 167 SHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAF 198 (443)
Q Consensus 167 SHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y 198 (443)
|||.+++..+||+|++|++|++. +.|+.+++
T Consensus 200 sH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~ 230 (236)
T cd03219 200 EHDMDVVMSLADRVTVLDQGRVI-AEGTPDEV 230 (236)
T ss_pred ecCHHHHHHhCCEEEEEeCCEEE-eecCHHHh
Confidence 99999999999999999999996 45766554
No 464
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.30 E-value=4.8e-11 Score=113.10 Aligned_cols=72 Identities=25% Similarity=0.316 Sum_probs=60.9
Q ss_pred HHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------HHHHHHHHHhhh----CCCeEEEE
Q psy208 117 ARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAIIWLENYLQN----WPTTLLVV 166 (443)
Q Consensus 117 ~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L~~----~~~tviiV 166 (443)
.++..+++.+|+.+ ..++++.+||||||+ .+..++.++|++ .+.|||+|
T Consensus 110 ~~~~~~l~~~~l~~-~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~ 188 (220)
T cd03293 110 ERAEELLELVGLSG-FENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLV 188 (220)
T ss_pred HHHHHHHHHcCChh-hhhCCcccCCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEE
Confidence 46788999999974 468899999999999 566677776643 36799999
Q ss_pred ecCHHHHhccCCcEEEEe--CCeeE
Q psy208 167 SHDRHFLDSVPTDIFHLH--SQRID 189 (443)
Q Consensus 167 SHDr~fLd~v~~~i~~l~--~g~i~ 189 (443)
|||.+++..+||+|+.|+ +|++.
T Consensus 189 sH~~~~~~~~~d~i~~l~~~~G~i~ 213 (220)
T cd03293 189 THDIDEAVFLADRVVVLSARPGRIV 213 (220)
T ss_pred ecCHHHHHHhCCEEEEEECCCCEEE
Confidence 999999999999999999 68875
No 465
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.29 E-value=3.9e-11 Score=118.02 Aligned_cols=81 Identities=17% Similarity=0.180 Sum_probs=67.2
Q ss_pred HHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------HHHHHHHHHhhh---CCCeEEEEe
Q psy208 117 ARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAIIWLENYLQN---WPTTLLVVS 167 (443)
Q Consensus 117 ~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L~~---~~~tviiVS 167 (443)
.++..+++.+|+.....++++.+||||||+ .+..++.+.|++ .+.|||+||
T Consensus 123 ~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivs 202 (280)
T PRK13649 123 ALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVT 202 (280)
T ss_pred HHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEe
Confidence 467788889999754568999999999999 577788877754 367999999
Q ss_pred cCHHHHhccCCcEEEEeCCeeEEEcCChhHH
Q psy208 168 HDRHFLDSVPTDIFHLHSQRIDTYRGNYEAF 198 (443)
Q Consensus 168 HDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y 198 (443)
||.+++..+||+|+.|++|++.. .|..++.
T Consensus 203 H~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~ 232 (280)
T PRK13649 203 HLMDDVANYADFVYVLEKGKLVL-SGKPKDI 232 (280)
T ss_pred ccHHHHHHhCCEEEEEECCEEEE-eCCHHHH
Confidence 99999999999999999999874 4665544
No 466
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.29 E-value=4.5e-11 Score=116.27 Aligned_cols=146 Identities=16% Similarity=0.130 Sum_probs=102.0
Q ss_pred hhhhhhhhhhcchHHHHHHHcccccc---------C------------C--CCCcceEEecC------CceEEEEecccC
Q psy208 6 VNTVSNSIFCFSSEFYCKALTLHLHL---------E------------G--GMVSGQLRIPS------HISVLHVEQEVV 56 (443)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~---------~------------~--~~~~G~i~~~~------~~~i~~l~Q~~~ 56 (443)
+=.+.|+++.|+...+++.+++.+.+ + | .+++|+|.+.. .-.++|++|++.
T Consensus 12 ~l~i~~l~~~~~~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~ 91 (257)
T PRK11247 12 PLLLNAVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMFQDAR 91 (257)
T ss_pred cEEEEEEEEEECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEEecCcc
Confidence 34567777777776677777777766 1 1 25779997632 125899999975
Q ss_pred CC-CchHHHHHHhccHHHHHHHHHHHHHHHHHhCCCCChhhHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCCChhhhhc
Q psy208 57 GD-DTPAIDSVLECDTKRQNLLNREKTITQAINNGTADANMSTELTQVFAELEAIEADKAPARASVILAGLGFTPEMQKR 135 (443)
Q Consensus 57 ~~-~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~~~L~~lgl~~~~~~~ 135 (443)
.. ..++.+.+.... . ...+.++..++..+|+.+ ..++
T Consensus 92 l~~~~tv~enl~~~~---------------------~--------------------~~~~~~~~~~l~~~gl~~-~~~~ 129 (257)
T PRK11247 92 LLPWKKVIDNVGLGL---------------------K--------------------GQWRDAALQALAAVGLAD-RANE 129 (257)
T ss_pred CCCCCcHHHHHHhcc---------------------c--------------------chHHHHHHHHHHHcCChh-HhcC
Confidence 43 234443322100 0 001246778888999975 4688
Q ss_pred cCCCCChHHHH--------------------------HHHHHHHHHhh----hCCCeEEEEecCHHHHhccCCcEEEEeC
Q psy208 136 ATKHFSGGWRK--------------------------MAIIWLENYLQ----NWPTTLLVVSHDRHFLDSVPTDIFHLHS 185 (443)
Q Consensus 136 ~~~~LSGGqr~--------------------------~~i~wL~~~L~----~~~~tviiVSHDr~fLd~v~~~i~~l~~ 185 (443)
++.+||||||+ .+..++.++|+ +.+.|||+||||.+++..+||+|+.|++
T Consensus 130 ~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~ 209 (257)
T PRK11247 130 WPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEE 209 (257)
T ss_pred ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 99999999999 56666666663 3478999999999999999999999999
Q ss_pred CeeEEEcCC
Q psy208 186 QRIDTYRGN 194 (443)
Q Consensus 186 g~i~~~~G~ 194 (443)
|++.. .|.
T Consensus 210 G~i~~-~~~ 217 (257)
T PRK11247 210 GKIGL-DLT 217 (257)
T ss_pred CEEEe-ecc
Confidence 99864 444
No 467
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.29 E-value=4.1e-11 Score=120.16 Aligned_cols=84 Identities=15% Similarity=0.198 Sum_probs=69.3
Q ss_pred HHHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------HHHHHHHHHhhh---CCCeEEEE
Q psy208 116 PARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAIIWLENYLQN---WPTTLLVV 166 (443)
Q Consensus 116 ~~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L~~---~~~tviiV 166 (443)
..++..++..+|++....++++.+||||||+ .+..++.+.|++ .+.|||+|
T Consensus 153 ~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~Tiiiv 232 (320)
T PRK13631 153 KKLAKFYLNKMGLDDSYLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVI 232 (320)
T ss_pred HHHHHHHHHHcCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 3478889999999754578999999999999 567777777743 46799999
Q ss_pred ecCHHHHhccCCcEEEEeCCeeEEEcCChhHHHH
Q psy208 167 SHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAFDK 200 (443)
Q Consensus 167 SHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y~~ 200 (443)
|||.+++..+||+|++|++|++. ..|..+++..
T Consensus 233 tHd~~~~~~~adri~vl~~G~i~-~~g~~~~~~~ 265 (320)
T PRK13631 233 THTMEHVLEVADEVIVMDKGKIL-KTGTPYEIFT 265 (320)
T ss_pred ecCHHHHHHhCCEEEEEECCEEE-EeCCHHHHhc
Confidence 99999999999999999999997 4577766543
No 468
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.29 E-value=4.9e-11 Score=121.22 Aligned_cols=81 Identities=19% Similarity=0.238 Sum_probs=66.3
Q ss_pred HHHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------HHHHHHHHHh----hhCCCeEEE
Q psy208 116 PARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAIIWLENYL----QNWPTTLLV 165 (443)
Q Consensus 116 ~~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L----~~~~~tvii 165 (443)
..++.++|+.+|+.+ ..++++.+||||||| ....+|.+.| ++++.|+|+
T Consensus 112 ~~~~~~~l~~~gL~~-~~~~~~~~LSgGq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~ 190 (356)
T PRK11650 112 EERVAEAARILELEP-LLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLY 190 (356)
T ss_pred HHHHHHHHHHcCChh-HhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 457889999999975 578999999999999 3445555544 345789999
Q ss_pred EecCHHHHhccCCcEEEEeCCeeEEEcCChhHH
Q psy208 166 VSHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAF 198 (443)
Q Consensus 166 VSHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y 198 (443)
||||.+.+..+||+|+.|++|++..+ |..++.
T Consensus 191 vTHd~~ea~~l~D~i~vl~~G~i~~~-g~~~~~ 222 (356)
T PRK11650 191 VTHDQVEAMTLADRVVVMNGGVAEQI-GTPVEV 222 (356)
T ss_pred EeCCHHHHHHhCCEEEEEeCCEEEEE-CCHHHH
Confidence 99999999999999999999999754 666543
No 469
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.29 E-value=3.3e-11 Score=115.80 Aligned_cols=81 Identities=19% Similarity=0.267 Sum_probs=67.3
Q ss_pred HHHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------HHHHHHHHHhhh----CCCeEEE
Q psy208 116 PARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAIIWLENYLQN----WPTTLLV 165 (443)
Q Consensus 116 ~~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L~~----~~~tvii 165 (443)
..++.++++.+|+.. ..++++.+||||||+ .+..++.+.|++ .+.|||+
T Consensus 123 ~~~~~~~l~~~~l~~-~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii 201 (243)
T TIGR02315 123 KERALSALERVGLAD-KAYQRADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVII 201 (243)
T ss_pred HHHHHHHHHHcCcHh-hhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 357888899999974 468999999999999 567777777754 3679999
Q ss_pred EecCHHHHhccCCcEEEEeCCeeEEEcCChhHH
Q psy208 166 VSHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAF 198 (443)
Q Consensus 166 VSHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y 198 (443)
||||.+++.++||+|+.|++|++. +.|+++..
T Consensus 202 ~tH~~~~~~~~~d~v~~l~~G~i~-~~~~~~~~ 233 (243)
T TIGR02315 202 NLHQVDLAKKYADRIVGLKAGEIV-FDGAPSEL 233 (243)
T ss_pred EeCCHHHHHHhcCeEEEEECCEEE-ecCCHHHh
Confidence 999999999999999999999986 56776654
No 470
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.29 E-value=2.8e-11 Score=114.75 Aligned_cols=130 Identities=17% Similarity=0.123 Sum_probs=94.2
Q ss_pred chHHHHHHHccccccCCCCCcceEEec------CCceEEEEecccCC-CCchHHHHHHhccHHHHHHHHHHHHHHHHHhC
Q psy208 17 SSEFYCKALTLHLHLEGGMVSGQLRIP------SHISVLHVEQEVVG-DDTPAIDSVLECDTKRQNLLNREKTITQAINN 89 (443)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~G~i~~~------~~~~i~~l~Q~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~ 89 (443)
|=++|++.|.|...|++ |+|.+. ++-.++|+.|+... +=.|+.+-|.-+.. +
T Consensus 41 GKSTLLriiAGL~~p~~----G~V~~~g~~v~~p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~---------------~-- 99 (248)
T COG1116 41 GKSTLLRLIAGLEKPTS----GEVLLDGRPVTGPGPDIGYVFQEDALLPWLTVLDNVALGLE---------------L-- 99 (248)
T ss_pred CHHHHHHHHhCCCCCCC----ceEEECCcccCCCCCCEEEEeccCcccchhhHHhhheehhh---------------c--
Confidence 34566667776666665 777653 35589999999764 33455544432100 0
Q ss_pred CCCChhhHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCCChhhhhccCCCCChHHHH-----------------------
Q psy208 90 GTADANMSTELTQVFAELEAIEADKAPARASVILAGLGFTPEMQKRATKHFSGGWRK----------------------- 146 (443)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~----------------------- 146 (443)
......+.++++.++|+.+|+.. ..++.+++|||||||
T Consensus 100 ------------------~~~~~~e~~~~a~~~L~~VgL~~-~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgA 160 (248)
T COG1116 100 ------------------RGKSKAEARERAKELLELVGLAG-FEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGA 160 (248)
T ss_pred ------------------cccchHhHHHHHHHHHHHcCCcc-hhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCCcch
Confidence 00122334458999999999985 468999999999999
Q ss_pred -------HHHHHHHHHhhhCCCeEEEEecCHHHHhccCCcEEEEeCC
Q psy208 147 -------MAIIWLENYLQNWPTTLLVVSHDRHFLDSVPTDIFHLHSQ 186 (443)
Q Consensus 147 -------~~i~wL~~~L~~~~~tviiVSHDr~fLd~v~~~i~~l~~g 186 (443)
..-+||.+..++.+.|||+||||.+..-.++|||+.|.++
T Consensus 161 LDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~ 207 (248)
T COG1116 161 LDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNR 207 (248)
T ss_pred hhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCC
Confidence 3555788877888999999999999999999999999873
No 471
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.29 E-value=5.5e-11 Score=120.42 Aligned_cols=80 Identities=16% Similarity=0.313 Sum_probs=66.2
Q ss_pred HHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------HHHHHHHHHhhh----CCCeEEEE
Q psy208 117 ARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAIIWLENYLQN----WPTTLLVV 166 (443)
Q Consensus 117 ~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L~~----~~~tviiV 166 (443)
.++..+++.+|+++ ..++++.+||||||| .+..++.++|++ .+.|||+|
T Consensus 119 ~~~~~~l~~~gL~~-~~~~~~~~LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilv 197 (343)
T PRK11153 119 ARVTELLELVGLSD-KADRYPAQLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLI 197 (343)
T ss_pred HHHHHHHHHcCCch-hhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 47888899999975 468999999999999 566677777754 36799999
Q ss_pred ecCHHHHhccCCcEEEEeCCeeEEEcCChhHH
Q psy208 167 SHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAF 198 (443)
Q Consensus 167 SHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y 198 (443)
|||.+++..+||+|+.|++|++. +.|...+.
T Consensus 198 tH~~~~i~~~~d~v~~l~~G~i~-~~g~~~~~ 228 (343)
T PRK11153 198 THEMDVVKRICDRVAVIDAGRLV-EQGTVSEV 228 (343)
T ss_pred eCCHHHHHHhCCEEEEEECCEEE-EEcCHHHH
Confidence 99999999999999999999996 45665443
No 472
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.29 E-value=2.7e-11 Score=117.59 Aligned_cols=133 Identities=17% Similarity=0.214 Sum_probs=97.6
Q ss_pred CCcceEEecC--------------CceEEEEecccCC-CCchHHHHHHhccHHHHHHHHHHHHHHHHHhCCCCChhhHHH
Q psy208 35 MVSGQLRIPS--------------HISVLHVEQEVVG-DDTPAIDSVLECDTKRQNLLNREKTITQAINNGTADANMSTE 99 (443)
Q Consensus 35 ~~~G~i~~~~--------------~~~i~~l~Q~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~ 99 (443)
|++|+|.+.. .-+||++.|++.. ...||.+-+.- .|+
T Consensus 58 PtsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLLssrTV~~NvA~------PLe---------------------- 109 (339)
T COG1135 58 PTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAF------PLE---------------------- 109 (339)
T ss_pred CCCceEEEcCEecccCChHHHHHHHhhccEEeccccccccchHHhhhhh------hHh----------------------
Confidence 6779988643 1368999999875 45666654421 110
Q ss_pred HHHHHHHHhhcccCCHHHHHHHHHHhCCCChhhhhccCCCCChHHHH-----------------------------HHHH
Q psy208 100 LTQVFAELEAIEADKAPARASVILAGLGFTPEMQKRATKHFSGGWRK-----------------------------MAII 150 (443)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~-----------------------------~~i~ 150 (443)
+..+...++++|+.+.|+-+|+++ ..++.+++||||||| ++|.
T Consensus 110 -------iag~~k~ei~~RV~elLelVgL~d-k~~~yP~qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL 181 (339)
T COG1135 110 -------LAGVPKAEIKQRVAELLELVGLSD-KADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSIL 181 (339)
T ss_pred -------hcCCCHHHHHHHHHHHHHHcCChh-hhccCchhcCcchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHH
Confidence 011223356789999999999994 678999999999999 3444
Q ss_pred HHHHHh-hhCCCeEEEEecCHHHHhccCCcEEEEeCCeeEEEcCChhHHHHHHH
Q psy208 151 WLENYL-QNWPTTLLVVSHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAFDKIKT 203 (443)
Q Consensus 151 wL~~~L-~~~~~tviiVSHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y~~~~~ 203 (443)
-|..-+ ++.+.||++|+|-.+++..+|+|+.+|+.|++....--.+-|...+.
T Consensus 182 ~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF~~Pk~ 235 (339)
T COG1135 182 ELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVFANPKH 235 (339)
T ss_pred HHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHhhcCcch
Confidence 444444 57899999999999999999999999999999886555566655433
No 473
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.29 E-value=6.6e-11 Score=115.51 Aligned_cols=82 Identities=20% Similarity=0.289 Sum_probs=64.9
Q ss_pred HHHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------HHHH----HHHHHhhhCCCeEEE
Q psy208 116 PARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAII----WLENYLQNWPTTLLV 165 (443)
Q Consensus 116 ~~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i~----wL~~~L~~~~~tvii 165 (443)
+.++..+++.+|+.....++++.+||||||+ .+.. +|.++.++++.|||+
T Consensus 127 ~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii 206 (265)
T TIGR02769 127 KARIAELLDMVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLF 206 (265)
T ss_pred HHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEE
Confidence 3568888999999644568899999999999 3333 444443445789999
Q ss_pred EecCHHHHhccCCcEEEEeCCeeEEEcCChhHH
Q psy208 166 VSHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAF 198 (443)
Q Consensus 166 VSHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y 198 (443)
||||.+++..+||+++.|++|++. +.|..++.
T Consensus 207 vsH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~ 238 (265)
T TIGR02769 207 ITHDLRLVQSFCQRVAVMDKGQIV-EECDVAQL 238 (265)
T ss_pred EeCCHHHHHHHhcEEEEEeCCEEE-EECCHHHH
Confidence 999999999999999999999996 55776554
No 474
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.29 E-value=4.1e-11 Score=121.65 Aligned_cols=80 Identities=19% Similarity=0.275 Sum_probs=66.0
Q ss_pred HHHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------HHHHHHHHHh----hhCCCeEEE
Q psy208 116 PARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAIIWLENYL----QNWPTTLLV 165 (443)
Q Consensus 116 ~~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L----~~~~~tvii 165 (443)
..++.++++.+|+.+ ..++++.+||||||| ....+|.+.| ++++.|+|+
T Consensus 112 ~~~~~~~l~~l~L~~-~~~~~~~~LSgGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~ 190 (353)
T TIGR03265 112 AERVAELLDLVGLPG-SERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIM 190 (353)
T ss_pred HHHHHHHHHHcCCCc-hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 458899999999985 578999999999999 3455555555 346889999
Q ss_pred EecCHHHHhccCCcEEEEeCCeeEEEcCChhH
Q psy208 166 VSHDRHFLDSVPTDIFHLHSQRIDTYRGNYEA 197 (443)
Q Consensus 166 VSHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~ 197 (443)
||||.+.+..+||+|+.|++|++..+ |..++
T Consensus 191 vTHd~~ea~~l~d~i~vl~~G~i~~~-g~~~~ 221 (353)
T TIGR03265 191 VTHDQEEALSMADRIVVMNHGVIEQV-GTPQE 221 (353)
T ss_pred EcCCHHHHHHhCCEEEEEECCEEEEE-cCHHH
Confidence 99999999999999999999999755 55443
No 475
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.29 E-value=4.8e-11 Score=114.71 Aligned_cols=81 Identities=21% Similarity=0.336 Sum_probs=69.3
Q ss_pred HHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------HHHHHHHHHhhh---CCCeEEEEe
Q psy208 117 ARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAIIWLENYLQN---WPTTLLVVS 167 (443)
Q Consensus 117 ~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L~~---~~~tviiVS 167 (443)
.++..+++.+|++. ..++++.+||||||+ .++.||.+.|++ .+.|+|+||
T Consensus 120 ~~~~~~l~~~gl~~-~~~~~~~~LS~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~s 198 (242)
T PRK11124 120 ARAEKLLERLRLKP-YADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVT 198 (242)
T ss_pred HHHHHHHHHcCChh-hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 46888899999974 568999999999999 678888888854 468999999
Q ss_pred cCHHHHhccCCcEEEEeCCeeEEEcCChhHHH
Q psy208 168 HDRHFLDSVPTDIFHLHSQRIDTYRGNYEAFD 199 (443)
Q Consensus 168 HDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y~ 199 (443)
||.+++..+|++|+.|++|++. +.|+++.+.
T Consensus 199 h~~~~~~~~~d~i~~l~~g~i~-~~~~~~~~~ 229 (242)
T PRK11124 199 HEVEVARKTASRVVYMENGHIV-EQGDASCFT 229 (242)
T ss_pred CCHHHHHHhcCEEEEEECCEEE-EeCCHHHhc
Confidence 9999999999999999999996 568877653
No 476
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.28 E-value=4.7e-11 Score=114.74 Aligned_cols=82 Identities=13% Similarity=0.218 Sum_probs=66.8
Q ss_pred HHHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------HHHHHHHHHh---hhCCCeEEEE
Q psy208 116 PARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAIIWLENYL---QNWPTTLLVV 166 (443)
Q Consensus 116 ~~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L---~~~~~tviiV 166 (443)
+.++.++++.+|+.. ..++++.+||||||+ .+..++.+.| ++.+.|||+|
T Consensus 115 ~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~ 193 (241)
T PRK10895 115 EDRANELMEEFHIEH-LRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLIT 193 (241)
T ss_pred HHHHHHHHHHcCCHH-HhhcchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 356788899999975 468899999999999 4555665555 3457899999
Q ss_pred ecCHHHHhccCCcEEEEeCCeeEEEcCChhHHH
Q psy208 167 SHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAFD 199 (443)
Q Consensus 167 SHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y~ 199 (443)
|||.+++..+||+|+.|++|++. +.|+++++.
T Consensus 194 sH~~~~~~~~~d~v~~l~~G~i~-~~~~~~~~~ 225 (241)
T PRK10895 194 DHNVRETLAVCERAYIVSQGHLI-AHGTPTEIL 225 (241)
T ss_pred EcCHHHHHHhcCEEEEEeCCeEE-eeCCHHHHh
Confidence 99999999999999999999986 468877663
No 477
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.28 E-value=5.9e-11 Score=113.96 Aligned_cols=80 Identities=21% Similarity=0.280 Sum_probs=65.8
Q ss_pred HHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------HHHHHHHHHhhh----CCCeEEEE
Q psy208 117 ARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAIIWLENYLQN----WPTTLLVV 166 (443)
Q Consensus 117 ~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L~~----~~~tviiV 166 (443)
.++..+++.+|+.+ ..++++.+||||||+ .+..++.++|++ .+.|||+|
T Consensus 115 ~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~ 193 (239)
T cd03296 115 AKVHELLKLVQLDW-LADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFV 193 (239)
T ss_pred HHHHHHHHHcCChh-hhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEE
Confidence 46778899999974 468899999999999 566777777754 36799999
Q ss_pred ecCHHHHhccCCcEEEEeCCeeEEEcCChhHH
Q psy208 167 SHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAF 198 (443)
Q Consensus 167 SHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y 198 (443)
|||.+++..+||+|+.|++|++. +.|..+.+
T Consensus 194 sH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~ 224 (239)
T cd03296 194 THDQEEALEVADRVVVMNKGRIE-QVGTPDEV 224 (239)
T ss_pred eCCHHHHHHhCCEEEEEECCeEE-EecCHHHH
Confidence 99999999999999999999986 45665544
No 478
>PRK10908 cell division protein FtsE; Provisional
Probab=99.28 E-value=5e-11 Score=113.09 Aligned_cols=73 Identities=18% Similarity=0.231 Sum_probs=59.1
Q ss_pred HHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------HHHHHHHHHh---hhCCCeEEEEe
Q psy208 117 ARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAIIWLENYL---QNWPTTLLVVS 167 (443)
Q Consensus 117 ~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L---~~~~~tviiVS 167 (443)
.++..+++.+|+.+ ..++++.+||||||+ .+...+.+.| ++.+.|+|+||
T Consensus 116 ~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~s 194 (222)
T PRK10908 116 RRVSAALDKVGLLD-KAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMAT 194 (222)
T ss_pred HHHHHHHHHcCChh-hhhCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEe
Confidence 35778889999975 468999999999999 3444444444 33468999999
Q ss_pred cCHHHHhccCCcEEEEeCCeeEE
Q psy208 168 HDRHFLDSVPTDIFHLHSQRIDT 190 (443)
Q Consensus 168 HDr~fLd~v~~~i~~l~~g~i~~ 190 (443)
||.+++..+||+|+.|++|++.-
T Consensus 195 H~~~~~~~~~d~i~~l~~G~i~~ 217 (222)
T PRK10908 195 HDIGLISRRSYRMLTLSDGHLHG 217 (222)
T ss_pred CCHHHHHHhCCEEEEEECCEEcc
Confidence 99999999999999999999854
No 479
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.28 E-value=5.6e-11 Score=120.59 Aligned_cols=153 Identities=18% Similarity=0.183 Sum_probs=103.7
Q ss_pred hhhhhhhhcchHHHHHHHcccccc---------C------------C--CCCcceEEecC---------CceEEEEeccc
Q psy208 8 TVSNSIFCFSSEFYCKALTLHLHL---------E------------G--GMVSGQLRIPS---------HISVLHVEQEV 55 (443)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~---------~------------~--~~~~G~i~~~~---------~~~i~~l~Q~~ 55 (443)
.+.|+++.|+....++.+++.+.+ + | .+++|+|.+.. .-++||++|++
T Consensus 8 ~~~~l~~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~ 87 (351)
T PRK11432 8 VLKNITKRFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDICMVFQSY 87 (351)
T ss_pred EEEeEEEEECCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCc
Confidence 456677777655555555555554 1 1 14678887532 13699999998
Q ss_pred CC-CCchHHHHHHhccHHHHHHHHHHHHHHHHHhCCCCChhhHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCCChhhhh
Q psy208 56 VG-DDTPAIDSVLECDTKRQNLLNREKTITQAINNGTADANMSTELTQVFAELEAIEADKAPARASVILAGLGFTPEMQK 134 (443)
Q Consensus 56 ~~-~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~~~L~~lgl~~~~~~ 134 (443)
.. ...|+.+.+.-. +. + . ..+..+...++.++++.+|+.. ..+
T Consensus 88 ~lfp~~tv~eNi~~~------l~---------~-~-------------------~~~~~~~~~~v~~~l~~~gl~~-~~~ 131 (351)
T PRK11432 88 ALFPHMSLGENVGYG------LK---------M-L-------------------GVPKEERKQRVKEALELVDLAG-FED 131 (351)
T ss_pred ccCCCCCHHHHHHHH------Hh---------H-c-------------------CCCHHHHHHHHHHHHHHcCCch-hhc
Confidence 64 445665443211 00 0 0 0011123458889999999985 568
Q ss_pred ccCCCCChHHHH--------------------------HHHHHHHHHh----hhCCCeEEEEecCHHHHhccCCcEEEEe
Q psy208 135 RATKHFSGGWRK--------------------------MAIIWLENYL----QNWPTTLLVVSHDRHFLDSVPTDIFHLH 184 (443)
Q Consensus 135 ~~~~~LSGGqr~--------------------------~~i~wL~~~L----~~~~~tviiVSHDr~fLd~v~~~i~~l~ 184 (443)
+++.+||||||| ..+.++.+.| ++++.|+|+||||.+.+..+||+|++|+
T Consensus 132 r~~~~LSgGq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~ 211 (351)
T PRK11432 132 RYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMN 211 (351)
T ss_pred CChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEE
Confidence 999999999999 4555555555 4457899999999999999999999999
Q ss_pred CCeeEEEcCChhH
Q psy208 185 SQRIDTYRGNYEA 197 (443)
Q Consensus 185 ~g~i~~~~G~y~~ 197 (443)
+|++... |..++
T Consensus 212 ~G~i~~~-g~~~~ 223 (351)
T PRK11432 212 KGKIMQI-GSPQE 223 (351)
T ss_pred CCEEEEE-cCHHH
Confidence 9999764 66544
No 480
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.28 E-value=6.3e-11 Score=119.18 Aligned_cols=81 Identities=23% Similarity=0.368 Sum_probs=66.0
Q ss_pred HHHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------HHHHHHHHHh----hhCCCeEEE
Q psy208 116 PARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAIIWLENYL----QNWPTTLLV 165 (443)
Q Consensus 116 ~~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L----~~~~~tvii 165 (443)
..++.++|..+|+++..+++++++||||||| .+..++.+.| ++++.|+|+
T Consensus 131 ~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~ 210 (327)
T PRK11308 131 REKALAMMAKVGLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVF 210 (327)
T ss_pred HHHHHHHHHHCCCChHHhcCCCccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 4578999999999765678999999999999 3444555544 335789999
Q ss_pred EecCHHHHhccCCcEEEEeCCeeEEEcCChhH
Q psy208 166 VSHDRHFLDSVPTDIFHLHSQRIDTYRGNYEA 197 (443)
Q Consensus 166 VSHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~ 197 (443)
||||..++..+||+|++|++|++..+ |.-++
T Consensus 211 iTHdl~~~~~~adrv~vm~~G~ive~-g~~~~ 241 (327)
T PRK11308 211 ISHDLSVVEHIADEVMVMYLGRCVEK-GTKEQ 241 (327)
T ss_pred EeCCHHHHHHhCCEEEEEECCEEEEE-CCHHH
Confidence 99999999999999999999999764 65443
No 481
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.28 E-value=8.1e-11 Score=115.17 Aligned_cols=80 Identities=19% Similarity=0.250 Sum_probs=66.2
Q ss_pred HHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------HHHHHHHHHhhh----CCCeEEEE
Q psy208 117 ARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAIIWLENYLQN----WPTTLLVV 166 (443)
Q Consensus 117 ~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L~~----~~~tviiV 166 (443)
.++.++++.+|+.+ ..++++.+||||||+ .+..++.+.|++ .+.|||+|
T Consensus 139 ~~~~~~l~~~~l~~-~~~~~~~~LS~Gq~qrv~lAral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~ 217 (269)
T cd03294 139 ERAAEALELVGLEG-WEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFI 217 (269)
T ss_pred HHHHHHHHHcCCHh-HhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 46788899999974 468999999999999 566777776643 36799999
Q ss_pred ecCHHHHhccCCcEEEEeCCeeEEEcCChhHH
Q psy208 167 SHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAF 198 (443)
Q Consensus 167 SHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y 198 (443)
|||.+++..+||+|+.|++|++.. .|..+++
T Consensus 218 tH~~~~~~~~~d~v~~l~~G~i~~-~g~~~~~ 248 (269)
T cd03294 218 THDLDEALRLGDRIAIMKDGRLVQ-VGTPEEI 248 (269)
T ss_pred eCCHHHHHHhcCEEEEEECCEEEE-eCCHHHH
Confidence 999999999999999999999974 4665554
No 482
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.28 E-value=5.8e-11 Score=115.30 Aligned_cols=73 Identities=22% Similarity=0.291 Sum_probs=62.3
Q ss_pred HHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------HHHHHHHHHhhhC----CCeEEEE
Q psy208 117 ARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAIIWLENYLQNW----PTTLLVV 166 (443)
Q Consensus 117 ~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L~~~----~~tviiV 166 (443)
.++.+++..+|+.+ ..++++.+||||||+ .+..++.+.|+++ +.|||+|
T Consensus 107 ~~~~~~l~~~gl~~-~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviiv 185 (255)
T PRK11248 107 EIAHQMLKKVGLEG-AEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLI 185 (255)
T ss_pred HHHHHHHHHcCChh-HhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 47888999999975 468899999999999 6777888877543 6799999
Q ss_pred ecCHHHHhccCCcEEEEe--CCeeEE
Q psy208 167 SHDRHFLDSVPTDIFHLH--SQRIDT 190 (443)
Q Consensus 167 SHDr~fLd~v~~~i~~l~--~g~i~~ 190 (443)
|||.+++..+||+|+.|+ +|++..
T Consensus 186 sH~~~~~~~~~d~i~~l~~~~G~i~~ 211 (255)
T PRK11248 186 THDIEEAVFMATELVLLSPGPGRVVE 211 (255)
T ss_pred eCCHHHHHHhCCEEEEEeCCCcEEEE
Confidence 999999999999999998 488754
No 483
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.28 E-value=6.3e-11 Score=115.38 Aligned_cols=81 Identities=20% Similarity=0.283 Sum_probs=69.6
Q ss_pred HHHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------HHHHHHHHHhhhC----CCeEEE
Q psy208 116 PARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAIIWLENYLQNW----PTTLLV 165 (443)
Q Consensus 116 ~~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L~~~----~~tvii 165 (443)
+.++..+++.+|+.. ..++++.+||||||+ .++.+|.+.|+++ +.|||+
T Consensus 130 ~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii 208 (262)
T PRK09984 130 KQRALQALTRVGMVH-FAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVV 208 (262)
T ss_pred HHHHHHHHHHcCCHH-HHhCCccccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 457889999999974 568999999999999 5777888877543 579999
Q ss_pred EecCHHHHhccCCcEEEEeCCeeEEEcCChhHH
Q psy208 166 VSHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAF 198 (443)
Q Consensus 166 VSHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y 198 (443)
||||.+++..+|++|++|++|++. +.|+++++
T Consensus 209 ~tH~~~~~~~~~d~i~~l~~g~i~-~~g~~~~~ 240 (262)
T PRK09984 209 TLHQVDYALRYCERIVALRQGHVF-YDGSSQQF 240 (262)
T ss_pred EeCCHHHHHHhCCEEEEEECCEEE-EeCCHHHh
Confidence 999999999999999999999995 67888776
No 484
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.28 E-value=3.9e-11 Score=113.41 Aligned_cols=71 Identities=24% Similarity=0.327 Sum_probs=59.7
Q ss_pred HHHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------HHHHHHHHHhhh----CCCeEEE
Q psy208 116 PARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAIIWLENYLQN----WPTTLLV 165 (443)
Q Consensus 116 ~~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L~~----~~~tvii 165 (443)
+.++..+++.+|+.+ ..++++.+||||||+ .+..++.+.|++ .+.|||+
T Consensus 118 ~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~ 196 (218)
T cd03255 118 RERAEELLERVGLGD-RLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVV 196 (218)
T ss_pred HHHHHHHHHHcCCch-hhhcChhhcCHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEE
Confidence 357888999999975 468899999999999 567777777754 3679999
Q ss_pred EecCHHHHhccCCcEEEEeCCee
Q psy208 166 VSHDRHFLDSVPTDIFHLHSQRI 188 (443)
Q Consensus 166 VSHDr~fLd~v~~~i~~l~~g~i 188 (443)
||||.++++ +||+|+.|++|++
T Consensus 197 ~sH~~~~~~-~~d~v~~l~~G~i 218 (218)
T cd03255 197 VTHDPELAE-YADRIIELRDGKI 218 (218)
T ss_pred EECCHHHHh-hhcEEEEeeCCcC
Confidence 999999998 9999999999864
No 485
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=99.28 E-value=8.5e-12 Score=118.09 Aligned_cols=64 Identities=31% Similarity=0.450 Sum_probs=50.2
Q ss_pred HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHh----ccCCCeEEEeCCCCCCCHHHHHHHHHHHcccc
Q psy208 372 QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMC----MAAPNFLVLDEPTNHLDIETIEALGKAINKYT 442 (443)
Q Consensus 372 ~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al----~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~~ 442 (443)
..++...+...++..+ .||||||..++||..| ..+++++|||||.++||...+..+.+.|.++.
T Consensus 120 ~~~~~~~l~~~~i~~~-------~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~ 187 (220)
T PF02463_consen 120 LKDLEELLPEVGISPE-------FLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELS 187 (220)
T ss_dssp HHHHHHHHHCTTTTTT-------GS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHT
T ss_pred cccccccccccccccc-------cccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 4567777887777543 8999999999999765 35789999999999999999999999998754
No 486
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.27 E-value=8.3e-11 Score=118.45 Aligned_cols=82 Identities=18% Similarity=0.352 Sum_probs=65.5
Q ss_pred HHHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------HHHHHHHHHh----hhCCCeEEE
Q psy208 116 PARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAIIWLENYL----QNWPTTLLV 165 (443)
Q Consensus 116 ~~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L----~~~~~tvii 165 (443)
..++.++|+.+|+++...++.+++|||||+| .+...+.+.| ++++.|+|+
T Consensus 138 ~~~~~~~l~~vgl~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~ 217 (331)
T PRK15079 138 KDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIF 217 (331)
T ss_pred HHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 3578889999999755678999999999999 3444444444 335789999
Q ss_pred EecCHHHHhccCCcEEEEeCCeeEEEcCChhHH
Q psy208 166 VSHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAF 198 (443)
Q Consensus 166 VSHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y 198 (443)
||||..++..+||+|++|++|++.. .|..++.
T Consensus 218 iTHdl~~~~~~~dri~vl~~G~ive-~g~~~~i 249 (331)
T PRK15079 218 IAHDLAVVKHISDRVLVMYLGHAVE-LGTYDEV 249 (331)
T ss_pred EeCCHHHHHHhCCEEEEEECCEEEE-EcCHHHH
Confidence 9999999999999999999999975 4665543
No 487
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.27 E-value=4.4e-11 Score=112.48 Aligned_cols=70 Identities=21% Similarity=0.340 Sum_probs=59.6
Q ss_pred HHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------HHHHHHHHHhhhC---CCeEEEEe
Q psy208 117 ARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAIIWLENYLQNW---PTTLLVVS 167 (443)
Q Consensus 117 ~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L~~~---~~tviiVS 167 (443)
.++.+++..+|++. ..++++.+||||||+ .+..++.++|+++ +.|||+||
T Consensus 113 ~~~~~~l~~~~l~~-~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~s 191 (211)
T cd03225 113 ERVEEALELVGLEG-LRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVT 191 (211)
T ss_pred HHHHHHHHHcCcHh-hhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 46788889999974 568999999999999 5777888877543 56999999
Q ss_pred cCHHHHhccCCcEEEEeCCe
Q psy208 168 HDRHFLDSVPTDIFHLHSQR 187 (443)
Q Consensus 168 HDr~fLd~v~~~i~~l~~g~ 187 (443)
||.+++..+||+|+.|++|+
T Consensus 192 H~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 192 HDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred CCHHHHHHhCCEEEEEeCCC
Confidence 99999999999999998874
No 488
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.27 E-value=1.5e-10 Score=116.57 Aligned_cols=152 Identities=16% Similarity=0.095 Sum_probs=99.7
Q ss_pred chHHHHHHHccccccCCCCCcceEEecC---------------CceEEEEecccC--CCC-chHHHHHHhccHHHHHHHH
Q psy208 17 SSEFYCKALTLHLHLEGGMVSGQLRIPS---------------HISVLHVEQEVV--GDD-TPAIDSVLECDTKRQNLLN 78 (443)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~G~i~~~~---------------~~~i~~l~Q~~~--~~~-~~~~~~~~~~~~~~~~l~~ 78 (443)
|=++|++.|.|.+.+.+.+++|+|.+.+ +-.|+|++|++. ... .++.+.+...
T Consensus 45 GKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~--------- 115 (330)
T PRK15093 45 GKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQN--------- 115 (330)
T ss_pred CHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCcchhcCccccHHHHHHHH---------
Confidence 5578889998888766556789887632 125999999974 222 2333222110
Q ss_pred HHHHHHHHHhCCCCChhhHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCCCh--hhhhccCCCCChHHHH----------
Q psy208 79 REKTITQAINNGTADANMSTELTQVFAELEAIEADKAPARASVILAGLGFTP--EMQKRATKHFSGGWRK---------- 146 (443)
Q Consensus 79 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~~~L~~lgl~~--~~~~~~~~~LSGGqr~---------- 146 (443)
+. ....... . . ........++.++|+.+||.+ ..+++.+++|||||||
T Consensus 116 ----~~-~~~~~~~----------~---~--~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSgG~~QRv~iArAL~~ 175 (330)
T PRK15093 116 ----IP-GWTYKGR----------W---W--QRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTEGECQKVMIAIALAN 175 (330)
T ss_pred ----HH-hhhcccc----------c---c--ccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHC
Confidence 00 0000000 0 0 000012357889999999974 3467899999999999
Q ss_pred ----------------HHHHHHHHHhh----hCCCeEEEEecCHHHHhccCCcEEEEeCCeeEEEcCChhHH
Q psy208 147 ----------------MAIIWLENYLQ----NWPTTLLVVSHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAF 198 (443)
Q Consensus 147 ----------------~~i~wL~~~L~----~~~~tviiVSHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y 198 (443)
.+..++.+.|+ +++.|+|+||||..++..+||+|++|++|++.. .|...++
T Consensus 176 ~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~G~ive-~g~~~~i 246 (330)
T PRK15093 176 QPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCGQTVE-TAPSKEL 246 (330)
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEE-ECCHHHH
Confidence 35555555553 357899999999999999999999999999964 5665443
No 489
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.27 E-value=7.4e-11 Score=113.15 Aligned_cols=81 Identities=20% Similarity=0.254 Sum_probs=67.1
Q ss_pred HHHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------HHHHHHHHHhhh----CCCeEEE
Q psy208 116 PARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAIIWLENYLQN----WPTTLLV 165 (443)
Q Consensus 116 ~~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L~~----~~~tvii 165 (443)
..++..+++.+|+.. ..++++.+||||||+ .+..++.+.|++ .+.|||+
T Consensus 122 ~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~ 200 (241)
T cd03256 122 KQRALAALERVGLLD-KAYQRADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIV 200 (241)
T ss_pred HHHHHHHHHHcCChh-hhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 356788899999974 468899999999999 566677776643 4689999
Q ss_pred EecCHHHHhccCCcEEEEeCCeeEEEcCChhHH
Q psy208 166 VSHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAF 198 (443)
Q Consensus 166 VSHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y 198 (443)
||||.+++..+||+|+.|++|++. +.|.++++
T Consensus 201 ~tH~~~~~~~~~d~v~~l~~G~i~-~~~~~~~~ 232 (241)
T cd03256 201 SLHQVDLAREYADRIVGLKDGRIV-FDGPPAEL 232 (241)
T ss_pred EeCCHHHHHHhCCEEEEEECCEEE-eecCHHHh
Confidence 999999999999999999999986 45777665
No 490
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.27 E-value=8e-11 Score=112.57 Aligned_cols=80 Identities=19% Similarity=0.216 Sum_probs=66.5
Q ss_pred HHHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------HHHHHHHHHhhh----CCCeEEE
Q psy208 116 PARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAIIWLENYLQN----WPTTLLV 165 (443)
Q Consensus 116 ~~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L~~----~~~tvii 165 (443)
+.++..+++.+|+.+ ..++.+.+|||||++ .+..|+.+.|++ .+.|||+
T Consensus 108 ~~~~~~~l~~~~l~~-~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii 186 (232)
T cd03300 108 KERVAEALDLVQLEG-YANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVF 186 (232)
T ss_pred HHHHHHHHHHcCCch-hhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 347788899999974 568899999999999 577788877754 3689999
Q ss_pred EecCHHHHhccCCcEEEEeCCeeEEEcCChhH
Q psy208 166 VSHDRHFLDSVPTDIFHLHSQRIDTYRGNYEA 197 (443)
Q Consensus 166 VSHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~ 197 (443)
||||.+++..+||+|+.|++|++..+ |....
T Consensus 187 ~sh~~~~~~~~~d~i~~l~~G~~~~~-~~~~~ 217 (232)
T cd03300 187 VTHDQEEALTMSDRIAVMNKGKIQQI-GTPEE 217 (232)
T ss_pred EeCCHHHHHHhcCEEEEEECCEEEec-CCHHH
Confidence 99999999999999999999999754 55443
No 491
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.27 E-value=8.1e-11 Score=114.19 Aligned_cols=80 Identities=20% Similarity=0.201 Sum_probs=66.5
Q ss_pred HHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------HHHHHHHHHhhhC---CCeEEEEe
Q psy208 117 ARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAIIWLENYLQNW---PTTLLVVS 167 (443)
Q Consensus 117 ~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L~~~---~~tviiVS 167 (443)
.++.+++..+|+.+ ..++++.+||||||+ .+..++.+.|++. +.|||+||
T Consensus 116 ~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~s 194 (256)
T TIGR03873 116 AVVDRALARTELSH-LADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAAL 194 (256)
T ss_pred HHHHHHHHHcCcHh-hhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 46888899999974 568999999999999 5677777777543 67999999
Q ss_pred cCHHHHhccCCcEEEEeCCeeEEEcCChhHH
Q psy208 168 HDRHFLDSVPTDIFHLHSQRIDTYRGNYEAF 198 (443)
Q Consensus 168 HDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y 198 (443)
||.+++..+||+|+.|++|++. ..|..+++
T Consensus 195 H~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~ 224 (256)
T TIGR03873 195 HDLNLAASYCDHVVVLDGGRVV-AAGPPREV 224 (256)
T ss_pred CCHHHHHHhCCEEEEEeCCCEE-EecCHHHh
Confidence 9999999999999999999986 45776554
No 492
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.27 E-value=2.6e-11 Score=117.38 Aligned_cols=81 Identities=16% Similarity=0.184 Sum_probs=65.4
Q ss_pred HHHHHHHHhCCCCh---hhhhccCCCCChHHHH--------------------------HHHHHHHHHhhhC--CCeEEE
Q psy208 117 ARASVILAGLGFTP---EMQKRATKHFSGGWRK--------------------------MAIIWLENYLQNW--PTTLLV 165 (443)
Q Consensus 117 ~rv~~~L~~lgl~~---~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L~~~--~~tvii 165 (443)
.++..++..+|+.+ ...++++.+||||||+ .+..++.++|+++ +.|||+
T Consensus 124 ~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii 203 (253)
T PRK14242 124 ERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIII 203 (253)
T ss_pred HHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEE
Confidence 45667777778742 2457889999999999 5777888888643 479999
Q ss_pred EecCHHHHhccCCcEEEEeCCeeEEEcCChhHH
Q psy208 166 VSHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAF 198 (443)
Q Consensus 166 VSHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y 198 (443)
||||.+++..+||+|++|++|++. ..|..+++
T Consensus 204 ~tH~~~~~~~~~d~v~~l~~G~i~-~~g~~~~~ 235 (253)
T PRK14242 204 VTHNMQQAARVSDVTAFFYMGKLI-EVGPTEQI 235 (253)
T ss_pred EEecHHHHHHhCCEEEEEECCEEE-EeCCHHHH
Confidence 999999999999999999999996 45776554
No 493
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.26 E-value=8.4e-11 Score=113.80 Aligned_cols=81 Identities=20% Similarity=0.281 Sum_probs=67.3
Q ss_pred HHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------HHHHHHHHHhhh----CCCeEEEE
Q psy208 117 ARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAIIWLENYLQN----WPTTLLVV 166 (443)
Q Consensus 117 ~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L~~----~~~tviiV 166 (443)
.++.++++.+|+++ ..++.+.+|||||++ .+..++.+.|++ .+.|+|+|
T Consensus 125 ~~~~~~l~~~gl~~-~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiiv 203 (252)
T TIGR03005 125 KRAMELLDMVGLAD-KADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLV 203 (252)
T ss_pred HHHHHHHHHcCChh-HhhcChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEE
Confidence 46778899999974 468899999999999 566777777743 46799999
Q ss_pred ecCHHHHhccCCcEEEEeCCeeEEEcCChhHHH
Q psy208 167 SHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAFD 199 (443)
Q Consensus 167 SHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y~ 199 (443)
|||.+++..+||++++|++|++. ..|+++.+.
T Consensus 204 sH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~ 235 (252)
T TIGR03005 204 THEMGFAREFADRVCFFDKGRIV-EQGKPDEIF 235 (252)
T ss_pred eCCHHHHHHhcCEEEEEECCEEE-EeCCHHHHh
Confidence 99999999999999999999996 457776653
No 494
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.26 E-value=1e-10 Score=115.32 Aligned_cols=83 Identities=19% Similarity=0.294 Sum_probs=67.0
Q ss_pred HHHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------HHHHHHHHHh----hhCCCeEEE
Q psy208 116 PARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAIIWLENYL----QNWPTTLLV 165 (443)
Q Consensus 116 ~~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L----~~~~~tvii 165 (443)
..++..+++.+|+.. ..++++.+||||||+ .+...+.++| ++.+.|||+
T Consensus 119 ~~~~~~~l~~~gL~~-~~~~~~~~LS~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~till 197 (283)
T PRK13636 119 RKRVDNALKRTGIEH-LKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIII 197 (283)
T ss_pred HHHHHHHHHHCCChh-hhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 346888899999974 568999999999999 4554444444 334789999
Q ss_pred EecCHHHHhccCCcEEEEeCCeeEEEcCChhHHHH
Q psy208 166 VSHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAFDK 200 (443)
Q Consensus 166 VSHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y~~ 200 (443)
||||.+++..+||+|+.|++|++. +.|.+++...
T Consensus 198 vsH~~~~~~~~~dri~~l~~G~i~-~~g~~~~~~~ 231 (283)
T PRK13636 198 ATHDIDIVPLYCDNVFVMKEGRVI-LQGNPKEVFA 231 (283)
T ss_pred EecCHHHHHHhCCEEEEEECCEEE-EeCCHHHHhc
Confidence 999999999999999999999996 5688776643
No 495
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.26 E-value=4.9e-11 Score=112.28 Aligned_cols=72 Identities=21% Similarity=0.326 Sum_probs=61.4
Q ss_pred HHHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------HHHHHHHHHhhh---CCCeEEEE
Q psy208 116 PARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAIIWLENYLQN---WPTTLLVV 166 (443)
Q Consensus 116 ~~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L~~---~~~tviiV 166 (443)
+.++.++++.+|+++ ..++++.+|||||++ .+..++.+.|++ .+.|||+|
T Consensus 113 ~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~ 191 (213)
T cd03262 113 EERALELLEKVGLAD-KADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVV 191 (213)
T ss_pred HHHHHHHHHHcCCHh-HhhhCccccCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEE
Confidence 346778889999975 468999999999999 677888888864 36799999
Q ss_pred ecCHHHHhccCCcEEEEeCCee
Q psy208 167 SHDRHFLDSVPTDIFHLHSQRI 188 (443)
Q Consensus 167 SHDr~fLd~v~~~i~~l~~g~i 188 (443)
|||.+++..+||+|++|++|++
T Consensus 192 sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 192 THEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred eCCHHHHHHhCCEEEEEeCCcC
Confidence 9999999999999999998864
No 496
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.26 E-value=5.2e-11 Score=112.23 Aligned_cols=71 Identities=23% Similarity=0.326 Sum_probs=60.8
Q ss_pred HHHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------HHHHHHHHHhhh---CCCeEEEE
Q psy208 116 PARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAIIWLENYLQN---WPTTLLVV 166 (443)
Q Consensus 116 ~~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L~~---~~~tviiV 166 (443)
+.++..+++.+|+.+ ..++++.+||||||+ .+..++.+.|++ .+.|||+|
T Consensus 115 ~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~ 193 (214)
T TIGR02673 115 QRRVGAALRQVGLEH-KADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVA 193 (214)
T ss_pred HHHHHHHHHHcCChh-hhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEE
Confidence 347888999999985 468899999999999 677788887754 36899999
Q ss_pred ecCHHHHhccCCcEEEEeCCe
Q psy208 167 SHDRHFLDSVPTDIFHLHSQR 187 (443)
Q Consensus 167 SHDr~fLd~v~~~i~~l~~g~ 187 (443)
|||.+++..+||+|+.|++|+
T Consensus 194 tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 194 THDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred eCCHHHHHHhcCEEEEecCCC
Confidence 999999999999999998874
No 497
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.26 E-value=1.3e-10 Score=119.74 Aligned_cols=140 Identities=17% Similarity=0.196 Sum_probs=96.6
Q ss_pred hHHHHHHHccccccCCCCCcceEEecC---------------CceEEEEecccCC-CCchHHHHHHhccHHHHHHHHHHH
Q psy208 18 SEFYCKALTLHLHLEGGMVSGQLRIPS---------------HISVLHVEQEVVG-DDTPAIDSVLECDTKRQNLLNREK 81 (443)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~G~i~~~~---------------~~~i~~l~Q~~~~-~~~~~~~~~~~~~~~~~~l~~~~~ 81 (443)
=++|++.+.|.+.|++ |+|.+.. .-++||++|++.. ...|+.+.+....
T Consensus 67 KSTLLr~I~Gl~~p~s----G~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~----------- 131 (400)
T PRK10070 67 KSTMVRLLNRLIEPTR----GQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGM----------- 131 (400)
T ss_pred HHHHHHHHHcCCCCCC----CEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHHH-----------
Confidence 3677777777777665 8886532 1259999999754 3345544332110
Q ss_pred HHHHHHhCCCCChhhHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCCChhhhhccCCCCChHHHH---------------
Q psy208 82 TITQAINNGTADANMSTELTQVFAELEAIEADKAPARASVILAGLGFTPEMQKRATKHFSGGWRK--------------- 146 (443)
Q Consensus 82 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------- 146 (443)
.+. + +...+...++.++|+.+|+.+ ..++++.+|||||||
T Consensus 132 ----~~~-~-------------------~~~~~~~~~~~e~L~~~gL~~-~~~~~~~~LSgGq~QRv~LArAL~~~P~iL 186 (400)
T PRK10070 132 ----ELA-G-------------------INAEERREKALDALRQVGLEN-YAHSYPDELSGGMRQRVGLARALAINPDIL 186 (400)
T ss_pred ----Hhc-C-------------------CCHHHHHHHHHHHHHHcCCCh-hhhcCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 000 0 000112347888999999975 568999999999999
Q ss_pred -----------HHHHHHHHHhh----hCCCeEEEEecCHHHHhccCCcEEEEeCCeeEEEcCChhHH
Q psy208 147 -----------MAIIWLENYLQ----NWPTTLLVVSHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAF 198 (443)
Q Consensus 147 -----------~~i~wL~~~L~----~~~~tviiVSHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y 198 (443)
.+...+.+.|+ +.+.|||+||||.+++..+||+|+.|++|++. ..|..+++
T Consensus 187 LLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~-~~g~~~~l 252 (400)
T PRK10070 187 LMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVV-QVGTPDEI 252 (400)
T ss_pred EEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEE-ecCCHHHH
Confidence 45556666553 34789999999999999999999999999996 45765554
No 498
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.26 E-value=8.3e-11 Score=120.41 Aligned_cols=81 Identities=20% Similarity=0.264 Sum_probs=66.1
Q ss_pred HHHHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------HHHHHHH----HHhhhCCCeEE
Q psy208 115 APARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAIIWLE----NYLQNWPTTLL 164 (443)
Q Consensus 115 ~~~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i~wL~----~~L~~~~~tvi 164 (443)
...++.++++.+|+.+ ..++.+.+||||||| ....+|. +++++++.|+|
T Consensus 126 ~~~~v~~~l~~l~L~~-~~~~~~~~LSgGq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii 204 (377)
T PRK11607 126 IASRVNEMLGLVHMQE-FAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCV 204 (377)
T ss_pred HHHHHHHHHHHcCCch-hhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEE
Confidence 3457889999999985 568999999999999 3444444 55556789999
Q ss_pred EEecCHHHHhccCCcEEEEeCCeeEEEcCChhH
Q psy208 165 VVSHDRHFLDSVPTDIFHLHSQRIDTYRGNYEA 197 (443)
Q Consensus 165 iVSHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~ 197 (443)
+||||.+++..+||+|+.|++|++..+ |...+
T Consensus 205 ~vTHd~~ea~~laDri~vl~~G~i~~~-g~~~~ 236 (377)
T PRK11607 205 MVTHDQEEAMTMAGRIAIMNRGKFVQI-GEPEE 236 (377)
T ss_pred EEcCCHHHHHHhCCEEEEEeCCEEEEE-cCHHH
Confidence 999999999999999999999999865 66544
No 499
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.26 E-value=1.1e-10 Score=111.11 Aligned_cols=73 Identities=21% Similarity=0.256 Sum_probs=61.5
Q ss_pred HHHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------HHHHHHHHHhhh----CCCeEEE
Q psy208 116 PARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAIIWLENYLQN----WPTTLLV 165 (443)
Q Consensus 116 ~~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L~~----~~~tvii 165 (443)
..++.++++.+|+.+ ..++++.+||||||+ .+..++.+.|++ ++.|||+
T Consensus 124 ~~~~~~~l~~~~l~~-~~~~~~~~LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~ 202 (228)
T PRK10584 124 RNGAKALLEQLGLGK-RLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLIL 202 (228)
T ss_pred HHHHHHHHHHcCCHh-HhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 457888999999974 468899999999999 577788887743 4679999
Q ss_pred EecCHHHHhccCCcEEEEeCCeeEE
Q psy208 166 VSHDRHFLDSVPTDIFHLHSQRIDT 190 (443)
Q Consensus 166 VSHDr~fLd~v~~~i~~l~~g~i~~ 190 (443)
||||.++++. ||+|+.|++|++..
T Consensus 203 ~sH~~~~~~~-~d~i~~l~~g~i~~ 226 (228)
T PRK10584 203 VTHDLQLAAR-CDRRLRLVNGQLQE 226 (228)
T ss_pred EecCHHHHHh-CCEEEEEECCEEEe
Confidence 9999999965 99999999999853
No 500
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.26 E-value=9e-11 Score=110.74 Aligned_cols=73 Identities=19% Similarity=0.267 Sum_probs=62.0
Q ss_pred HHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------HHHHHHHHHhhh----CCCeEEEE
Q psy208 117 ARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAIIWLENYLQN----WPTTLLVV 166 (443)
Q Consensus 117 ~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L~~----~~~tviiV 166 (443)
.++.++++.+|++. ..++++.+||||||+ .+..++.+.|++ .+.|||+|
T Consensus 110 ~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~ 188 (214)
T cd03297 110 ISVDELLDLLGLDH-LLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFV 188 (214)
T ss_pred HHHHHHHHHcCCHh-HhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEE
Confidence 46778899999974 468899999999999 577777777743 36799999
Q ss_pred ecCHHHHhccCCcEEEEeCCeeEE
Q psy208 167 SHDRHFLDSVPTDIFHLHSQRIDT 190 (443)
Q Consensus 167 SHDr~fLd~v~~~i~~l~~g~i~~ 190 (443)
|||.+++..+|+++++|++|++..
T Consensus 189 sH~~~~~~~~~d~i~~l~~G~i~~ 212 (214)
T cd03297 189 THDLSEAEYLADRIVVMEDGRLQY 212 (214)
T ss_pred ecCHHHHHHhcCEEEEEECCEEEe
Confidence 999999999999999999999863
Done!