Query psy208
Match_columns 443
No_of_seqs 404 out of 3293
Neff 7.5
Searched_HMMs 29240
Date Fri Aug 16 23:47:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy208.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/208hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2iw3_A Elongation factor 3A; a 100.0 3.1E-47 1.1E-51 422.5 28.0 280 116-441 525-947 (986)
2 1yqt_A RNAse L inhibitor; ATP- 100.0 1.8E-44 6.1E-49 382.8 24.0 276 117-441 137-447 (538)
3 3bk7_A ABC transporter ATP-bin 100.0 2.9E-43 9.8E-48 377.7 24.4 276 117-441 207-517 (607)
4 3ozx_A RNAse L inhibitor; ATP 100.0 4.2E-42 1.4E-46 364.1 24.5 282 117-441 117-431 (538)
5 3j16_B RLI1P; ribosome recycli 100.0 5.2E-40 1.8E-44 352.1 25.3 279 114-441 197-513 (608)
6 3g5u_A MCG1178, multidrug resi 100.0 1.3E-38 4.4E-43 367.6 27.1 163 276-441 1030-1217(1284)
7 3gfo_A Cobalt import ATP-bindi 100.0 5.1E-39 1.7E-43 313.4 19.3 165 275-441 6-189 (275)
8 3tif_A Uncharacterized ABC tra 100.0 2.7E-39 9.3E-44 308.6 15.9 164 276-441 1-191 (235)
9 2pcj_A ABC transporter, lipopr 100.0 2.6E-38 9E-43 299.7 18.9 163 275-441 3-186 (224)
10 2ihy_A ABC transporter, ATP-bi 100.0 1.1E-38 3.7E-43 311.9 15.7 167 273-441 18-207 (279)
11 2olj_A Amino acid ABC transpor 100.0 6E-38 2.1E-42 304.0 20.6 163 275-441 23-205 (263)
12 1b0u_A Histidine permease; ABC 100.0 8.2E-38 2.8E-42 303.1 20.7 163 275-441 5-199 (262)
13 1g6h_A High-affinity branched- 100.0 5.5E-38 1.9E-42 303.5 19.4 164 274-441 5-199 (257)
14 1sgw_A Putative ABC transporte 100.0 3.5E-38 1.2E-42 296.7 17.3 162 274-441 8-179 (214)
15 1ji0_A ABC transporter; ATP bi 100.0 3.8E-38 1.3E-42 301.7 17.5 164 274-441 4-185 (240)
16 3tui_C Methionine import ATP-b 100.0 4.2E-38 1.4E-42 316.9 16.8 166 273-441 21-209 (366)
17 2nq2_C Hypothetical ABC transp 100.0 7.5E-38 2.6E-42 301.9 17.5 161 276-441 4-174 (253)
18 4g1u_C Hemin import ATP-bindin 100.0 1.5E-37 5.1E-42 301.8 19.5 164 274-441 9-193 (266)
19 2yz2_A Putative ABC transporte 100.0 1.9E-37 6.5E-42 301.2 20.3 165 276-441 2-184 (266)
20 1vpl_A ABC transporter, ATP-bi 100.0 1.4E-37 4.9E-42 300.3 18.9 164 274-441 13-192 (256)
21 3fvq_A Fe(3+) IONS import ATP- 100.0 2E-37 6.8E-42 311.7 19.2 161 276-440 4-183 (359)
22 1z47_A CYSA, putative ABC-tran 100.0 2.5E-37 8.7E-42 310.9 17.6 167 272-441 10-191 (355)
23 2ff7_A Alpha-hemolysin translo 100.0 5.5E-37 1.9E-41 294.8 18.3 162 276-441 7-191 (247)
24 2pjz_A Hypothetical protein ST 100.0 4E-37 1.4E-41 298.2 16.9 161 276-442 1-175 (263)
25 3rlf_A Maltose/maltodextrin im 100.0 3.7E-37 1.3E-41 311.7 16.9 162 276-441 3-179 (381)
26 2onk_A Molybdate/tungstate ABC 100.0 5.9E-37 2E-41 293.3 17.3 159 276-441 1-172 (240)
27 2yyz_A Sugar ABC transporter, 100.0 1.2E-36 4.3E-41 306.5 19.7 162 276-441 3-179 (359)
28 2zu0_C Probable ATP-dependent 100.0 6.6E-37 2.3E-41 297.5 16.5 166 274-442 18-211 (267)
29 3d31_A Sulfate/molybdate ABC t 100.0 1.5E-36 5E-41 304.9 17.9 161 276-441 1-173 (348)
30 2vf7_A UVRA2, excinuclease ABC 100.0 3.1E-36 1E-40 331.6 21.3 270 113-441 354-779 (842)
31 1oxx_K GLCV, glucose, ABC tran 100.0 1.7E-36 5.7E-41 305.4 17.7 162 276-441 3-186 (353)
32 2ixe_A Antigen peptide transpo 100.0 1.6E-36 5.5E-41 295.4 16.7 163 275-441 15-202 (271)
33 2it1_A 362AA long hypothetical 100.0 1.6E-36 5.5E-41 306.0 17.2 162 276-441 3-179 (362)
34 2d2e_A SUFC protein; ABC-ATPas 100.0 4.8E-37 1.6E-41 295.8 12.7 163 276-441 3-189 (250)
35 1v43_A Sugar-binding transport 100.0 2.5E-36 8.6E-41 305.6 18.5 163 275-441 10-187 (372)
36 3nh6_A ATP-binding cassette SU 100.0 1.9E-36 6.6E-41 299.2 16.7 164 275-441 52-236 (306)
37 1mv5_A LMRA, multidrug resista 100.0 5.2E-37 1.8E-41 294.3 12.0 162 276-441 1-185 (243)
38 1g29_1 MALK, maltose transport 100.0 3.3E-36 1.1E-40 305.0 18.4 162 276-441 3-185 (372)
39 2pze_A Cystic fibrosis transme 100.0 8.6E-36 2.9E-40 283.4 20.0 161 275-441 5-177 (229)
40 2cbz_A Multidrug resistance-as 100.0 3.2E-36 1.1E-40 287.8 16.3 158 276-439 3-171 (237)
41 2ghi_A Transport protein; mult 100.0 9.8E-36 3.3E-40 288.2 18.2 163 275-441 16-201 (260)
42 2qi9_C Vitamin B12 import ATP- 100.0 1.1E-35 3.7E-40 286.0 17.3 157 276-441 4-179 (249)
43 4f4c_A Multidrug resistance pr 100.0 5.9E-34 2E-38 329.6 31.7 163 276-441 1076-1263(1321)
44 3ux8_A Excinuclease ABC, A sub 100.0 5.9E-35 2E-39 317.9 20.3 265 121-441 184-592 (670)
45 2ygr_A Uvrabc system protein A 100.0 6.1E-35 2.1E-39 323.1 20.4 272 114-441 497-912 (993)
46 2r6f_A Excinuclease ABC subuni 100.0 1.9E-35 6.5E-40 326.0 15.5 271 114-441 480-894 (972)
47 3pih_A Uvrabc system protein A 100.0 3.8E-34 1.3E-38 317.3 24.1 268 118-441 443-854 (916)
48 3gd7_A Fusion complex of cysti 100.0 2.1E-34 7.1E-39 293.3 15.5 161 275-441 18-201 (390)
49 3b5x_A Lipid A export ATP-bind 100.0 2.8E-33 9.6E-38 300.0 23.0 163 275-441 340-526 (582)
50 3b60_A Lipid A export ATP-bind 100.0 3.7E-33 1.3E-37 299.0 21.1 163 275-441 340-526 (582)
51 2bbs_A Cystic fibrosis transme 100.0 1.6E-33 5.5E-38 276.5 16.0 154 275-438 39-202 (290)
52 2yl4_A ATP-binding cassette SU 100.0 9.8E-33 3.4E-37 296.5 21.7 162 277-441 342-529 (595)
53 4a82_A Cystic fibrosis transme 100.0 4.8E-33 1.6E-37 297.9 19.1 164 275-441 338-523 (578)
54 3qf4_B Uncharacterized ABC tra 100.0 3.5E-33 1.2E-37 300.1 17.6 162 276-441 354-537 (598)
55 3qf4_A ABC transporter, ATP-bi 100.0 2.8E-32 9.7E-37 292.4 20.4 164 275-441 340-525 (587)
56 3g5u_A MCG1178, multidrug resi 100.0 6.3E-30 2.1E-34 295.3 21.9 163 276-441 387-572 (1284)
57 4f4c_A Multidrug resistance pr 100.0 7.7E-30 2.6E-34 295.3 21.0 163 276-441 415-600 (1321)
58 1yqt_A RNAse L inhibitor; ATP- 100.0 1.2E-30 4E-35 276.8 11.9 160 277-441 21-204 (538)
59 3bk7_A ABC transporter ATP-bin 100.0 1.6E-30 5.6E-35 278.8 12.7 161 276-441 83-274 (607)
60 2iw3_A Elongation factor 3A; a 100.0 6.1E-29 2.1E-33 276.2 18.2 158 276-440 435-593 (986)
61 3j16_B RLI1P; ribosome recycli 99.9 3.9E-28 1.3E-32 260.1 13.8 159 280-442 81-268 (608)
62 3ozx_A RNAse L inhibitor; ATP 99.9 2.8E-27 9.7E-32 250.5 10.6 157 280-442 3-185 (538)
63 3ux8_A Excinuclease ABC, A sub 99.9 1.7E-26 5.8E-31 251.3 12.2 153 289-441 30-250 (670)
64 4aby_A DNA repair protein RECN 99.9 2.6E-23 8.9E-28 213.1 11.7 47 396-442 296-344 (415)
65 2npi_A Protein CLP1; CLP1-PCF1 99.9 6.9E-27 2.4E-31 243.0 -15.4 157 274-441 116-287 (460)
66 3b85_A Phosphate starvation-in 99.9 6.7E-26 2.3E-30 212.0 -7.3 126 289-441 12-146 (208)
67 4gp7_A Metallophosphoesterase; 99.9 1.2E-22 4.1E-27 183.8 3.3 129 295-441 1-145 (171)
68 1tf7_A KAIC; homohexamer, hexa 99.8 1.5E-22 5.1E-27 214.3 3.4 142 275-440 256-402 (525)
69 1tq4_A IIGP1, interferon-induc 99.8 5.9E-24 2E-28 217.7 -11.0 143 290-441 36-212 (413)
70 1ye8_A Protein THEP1, hypothet 99.8 4.3E-22 1.5E-26 181.7 1.4 114 305-441 2-129 (178)
71 3aez_A Pantothenate kinase; tr 99.8 2.2E-23 7.7E-28 206.5 -11.6 139 275-427 42-208 (312)
72 3qf7_A RAD50; ABC-ATPase, ATPa 99.8 1.3E-20 4.5E-25 190.6 7.8 53 390-442 274-332 (365)
73 2v9p_A Replication protein E1; 99.8 9.1E-23 3.1E-27 201.0 -14.5 132 276-435 101-233 (305)
74 1e69_A Chromosome segregation 99.8 4.6E-19 1.6E-23 176.2 10.7 53 389-441 213-269 (322)
75 1z6g_A Guanylate kinase; struc 99.8 1.3E-21 4.6E-26 183.9 -8.4 141 290-440 10-172 (218)
76 3b9q_A Chloroplast SRP recepto 99.7 2.6E-20 8.9E-25 183.7 -3.2 129 293-431 90-238 (302)
77 3sop_A Neuronal-specific septi 99.7 4.8E-20 1.6E-24 179.0 -4.0 123 305-437 4-137 (270)
78 2og2_A Putative signal recogni 99.7 1.7E-19 5.9E-24 181.5 -2.3 129 294-432 148-296 (359)
79 2pt7_A CAG-ALFA; ATPase, prote 99.7 5.5E-19 1.9E-23 176.3 0.9 93 291-424 159-251 (330)
80 3qkt_A DNA double-strand break 99.7 2.9E-17 1E-21 164.3 9.3 53 389-441 242-300 (339)
81 2i3b_A HCR-ntpase, human cance 99.7 1.7E-18 6E-23 159.3 -1.0 114 303-441 1-135 (189)
82 2dpy_A FLII, flagellum-specifi 99.7 9E-18 3.1E-22 173.5 4.1 146 275-441 130-294 (438)
83 1pui_A ENGB, probable GTP-bind 99.7 9.2E-18 3.1E-22 154.8 3.3 161 276-441 3-196 (210)
84 2o8b_B DNA mismatch repair pro 99.7 4.6E-17 1.6E-21 183.4 9.2 134 274-439 748-895 (1022)
85 2jeo_A Uridine-cytidine kinase 99.7 4.3E-18 1.5E-22 162.4 0.0 131 288-429 10-149 (245)
86 2eyu_A Twitching motility prot 99.7 9.3E-18 3.2E-22 162.1 0.7 114 276-437 5-119 (261)
87 2obl_A ESCN; ATPase, hydrolase 99.6 4.8E-17 1.6E-21 163.3 4.0 146 275-441 44-207 (347)
88 3thx_B DNA mismatch repair pro 99.6 4.3E-16 1.5E-20 173.2 11.1 128 276-435 640-774 (918)
89 2o5v_A DNA replication and rep 99.6 6.4E-16 2.2E-20 155.6 10.9 52 390-441 259-320 (359)
90 1ewq_A DNA mismatch repair pro 99.6 6.3E-16 2.1E-20 169.4 11.5 128 276-440 550-686 (765)
91 3thx_A DNA mismatch repair pro 99.6 9.9E-16 3.4E-20 170.8 10.6 120 276-436 631-764 (934)
92 3asz_A Uridine kinase; cytidin 99.6 2.8E-18 9.5E-23 159.3 -8.6 129 300-440 3-145 (211)
93 2qnr_A Septin-2, protein NEDD5 99.6 7.9E-18 2.7E-22 165.8 -6.5 139 280-435 2-150 (301)
94 1znw_A Guanylate kinase, GMP k 99.6 2.2E-18 7.4E-23 160.2 -10.5 136 290-441 9-173 (207)
95 1cr0_A DNA primase/helicase; R 99.5 1.1E-15 3.8E-20 149.4 3.2 142 290-441 22-182 (296)
96 2qag_C Septin-7; cell cycle, c 99.5 4.1E-16 1.4E-20 160.0 -3.4 140 275-436 10-163 (418)
97 1tf7_A KAIC; homohexamer, hexa 99.5 8.6E-17 3E-21 170.0 -9.6 142 276-441 12-171 (525)
98 1nlf_A Regulatory protein REPA 99.5 3.3E-14 1.1E-18 138.0 7.3 132 299-441 26-166 (279)
99 2bbw_A Adenylate kinase 4, AK4 99.5 1.2E-15 4E-20 145.4 -4.2 131 302-441 26-196 (246)
100 1wb9_A DNA mismatch repair pro 99.5 1.1E-13 3.6E-18 152.6 10.6 113 289-434 594-707 (800)
101 2ehv_A Hypothetical protein PH 99.5 2.6E-14 8.7E-19 135.1 4.5 146 276-440 6-167 (251)
102 3szr_A Interferon-induced GTP- 99.4 7E-16 2.4E-20 165.7 -7.8 140 275-441 9-180 (608)
103 2w0m_A SSO2452; RECA, SSPF, un 99.4 1.5E-13 5.1E-18 128.0 7.3 138 289-441 8-153 (235)
104 1ji0_A ABC transporter; ATP bi 99.4 1.1E-13 3.6E-18 131.9 6.3 80 117-198 117-226 (240)
105 3tui_C Methionine import ATP-b 99.4 1.4E-12 4.6E-17 131.2 14.5 139 19-198 68-251 (366)
106 3gfo_A Cobalt import ATP-bindi 99.4 1.1E-12 3.7E-17 127.4 13.2 82 116-199 121-232 (275)
107 2nq2_C Hypothetical ABC transp 99.4 1.4E-12 4.8E-17 125.1 13.7 140 19-198 45-215 (253)
108 2pjz_A Hypothetical protein ST 99.4 2.1E-12 7.2E-17 124.6 14.8 135 17-197 42-212 (263)
109 1f2t_B RAD50 ABC-ATPase; DNA d 99.4 1.6E-13 5.6E-18 121.0 6.0 53 389-441 51-109 (148)
110 1rj9_A FTSY, signal recognitio 99.4 8.3E-15 2.8E-19 144.4 -3.2 117 302-429 101-237 (304)
111 2olj_A Amino acid ABC transpor 99.4 1.5E-12 5.1E-17 125.7 12.2 81 116-198 137-246 (263)
112 3jvv_A Twitching mobility prot 99.4 1.5E-13 5.1E-18 138.2 5.3 111 280-438 92-218 (356)
113 1vpl_A ABC transporter, ATP-bi 99.4 3.1E-12 1E-16 123.0 13.8 80 117-198 125-233 (256)
114 1b0u_A Histidine permease; ABC 99.4 2.7E-12 9.2E-17 123.8 13.4 82 116-198 130-240 (262)
115 1zp6_A Hypothetical protein AT 99.4 8.9E-15 3E-19 133.1 -3.9 127 299-441 5-147 (191)
116 4a74_A DNA repair and recombin 99.4 5.2E-13 1.8E-17 124.4 7.8 113 299-429 21-141 (231)
117 3tif_A Uncharacterized ABC tra 99.4 1.6E-12 5.6E-17 123.3 11.0 142 19-198 45-232 (235)
118 2pcj_A ABC transporter, lipopr 99.4 3.3E-12 1.1E-16 120.3 12.9 72 117-190 119-219 (224)
119 2onk_A Molybdate/tungstate ABC 99.4 2.1E-12 7.1E-17 123.0 11.3 138 18-198 37-214 (240)
120 3fvq_A Fe(3+) IONS import ATP- 99.4 2.4E-12 8.3E-17 129.2 12.1 80 116-197 116-225 (359)
121 2yz2_A Putative ABC transporte 99.4 4.4E-12 1.5E-16 122.5 13.4 139 19-198 47-225 (266)
122 3rlf_A Maltose/maltodextrin im 99.4 3.6E-12 1.2E-16 128.9 13.3 138 19-197 43-220 (381)
123 2qag_B Septin-6, protein NEDD5 99.4 5.1E-14 1.8E-18 144.2 -0.4 155 276-440 16-203 (427)
124 2gza_A Type IV secretion syste 99.4 8.9E-14 3E-18 140.3 1.0 104 278-424 137-263 (361)
125 1z47_A CYSA, putative ABC-tran 99.3 5.5E-12 1.9E-16 126.6 13.6 81 116-198 123-233 (355)
126 2it1_A 362AA long hypothetical 99.3 5.2E-12 1.8E-16 127.1 13.5 80 116-197 111-220 (362)
127 2qm8_A GTPase/ATPase; G protei 99.3 3.4E-15 1.1E-19 149.3 -10.4 159 276-441 29-258 (337)
128 1oxx_K GLCV, glucose, ABC tran 99.3 6.1E-12 2.1E-16 126.3 13.1 80 116-197 118-227 (353)
129 1p9r_A General secretion pathw 99.3 3.1E-15 1.1E-19 153.5 -11.4 135 276-418 143-314 (418)
130 1g29_1 MALK, maltose transport 99.3 8.2E-12 2.8E-16 126.2 13.3 81 116-198 117-227 (372)
131 2yyz_A Sugar ABC transporter, 99.3 5.1E-12 1.7E-16 127.0 11.4 80 116-197 111-220 (359)
132 1v43_A Sugar-binding transport 99.3 5.6E-12 1.9E-16 127.3 11.7 80 116-197 119-228 (372)
133 1pzn_A RAD51, DNA repair and r 99.3 1.5E-12 5E-17 130.8 7.1 120 291-429 118-247 (349)
134 1htw_A HI0065; nucleotide-bind 99.3 1.8E-14 6E-19 128.7 -6.2 59 278-338 9-67 (158)
135 3d31_A Sulfate/molybdate ABC t 99.3 1.2E-11 4.3E-16 123.7 13.7 79 117-197 106-214 (348)
136 1g6h_A High-affinity branched- 99.3 4.7E-12 1.6E-16 121.7 9.8 80 116-197 131-239 (257)
137 2ewv_A Twitching motility prot 99.3 5.6E-13 1.9E-17 134.9 3.4 97 291-437 126-230 (372)
138 2rcn_A Probable GTPase ENGC; Y 99.3 2.1E-12 7.2E-17 129.6 7.1 112 292-411 205-329 (358)
139 2ihy_A ABC transporter, ATP-bi 99.3 6.8E-12 2.3E-16 122.0 9.9 80 117-198 140-250 (279)
140 4g1u_C Hemin import ATP-bindin 99.3 4.5E-11 1.5E-15 115.5 14.6 82 115-198 118-235 (266)
141 2cvh_A DNA repair and recombin 99.3 1.2E-11 4.2E-16 114.3 10.1 109 291-429 7-121 (220)
142 1lw7_A Transcriptional regulat 99.3 3.1E-14 1.1E-18 143.6 -8.4 139 292-439 157-312 (365)
143 2zu0_C Probable ATP-dependent 99.2 3.9E-11 1.3E-15 116.0 12.5 82 116-198 140-252 (267)
144 2qi9_C Vitamin B12 import ATP- 99.2 8.2E-11 2.8E-15 112.5 13.6 81 116-198 104-220 (249)
145 2ixe_A Antigen peptide transpo 99.2 9.5E-11 3.2E-15 113.5 13.8 78 119-199 135-244 (271)
146 2d2e_A SUFC protein; ABC-ATPas 99.2 2.3E-11 7.7E-16 116.4 9.2 79 117-196 120-229 (250)
147 3pih_A Uvrabc system protein A 99.2 1E-11 3.5E-16 138.1 7.5 68 375-442 444-513 (916)
148 2f1r_A Molybdopterin-guanine d 99.2 6.6E-14 2.3E-18 126.6 -8.4 119 304-439 3-157 (171)
149 3kta_B Chromosome segregation 99.2 1.3E-11 4.3E-16 111.7 6.3 52 390-441 59-114 (173)
150 1udx_A The GTP-binding protein 99.2 1.1E-12 3.9E-17 134.3 -1.6 131 293-432 147-285 (416)
151 1odf_A YGR205W, hypothetical 3 99.2 1E-12 3.5E-17 128.6 -2.2 121 301-429 29-168 (290)
152 2cbz_A Multidrug resistance-as 99.2 2.1E-10 7.2E-15 108.8 12.8 137 19-199 45-216 (237)
153 2ff7_A Alpha-hemolysin translo 99.2 2.5E-10 8.6E-15 109.0 13.0 64 133-198 139-230 (247)
154 2pze_A Cystic fibrosis transme 99.1 5.6E-10 1.9E-14 105.3 14.9 139 19-198 48-216 (229)
155 1sq5_A Pantothenate kinase; P- 99.1 2.5E-13 8.7E-18 133.9 -8.6 59 275-336 36-115 (308)
156 3c8u_A Fructokinase; YP_612366 99.1 1.3E-13 4.5E-18 127.9 -10.1 112 300-423 19-140 (208)
157 1s96_A Guanylate kinase, GMP k 99.1 2.2E-12 7.4E-17 121.2 -2.1 110 297-439 10-128 (219)
158 2yv5_A YJEQ protein; hydrolase 99.1 4.2E-12 1.4E-16 124.9 -1.1 107 300-408 162-300 (302)
159 3ec2_A DNA replication protein 99.1 1.3E-11 4.6E-16 111.2 2.1 96 297-440 32-128 (180)
160 2r6f_A Excinuclease ABC subuni 99.1 3.6E-11 1.2E-15 133.3 5.5 65 377-441 486-552 (972)
161 2vf7_A UVRA2, excinuclease ABC 99.1 5.4E-11 1.8E-15 131.2 6.9 64 378-441 362-427 (842)
162 2yhs_A FTSY, cell division pro 99.1 3.6E-12 1.2E-16 132.3 -2.8 126 293-429 283-428 (503)
163 2ygr_A Uvrabc system protein A 99.1 4.6E-11 1.6E-15 132.8 5.9 64 378-441 504-569 (993)
164 3nh6_A ATP-binding cassette SU 99.1 1.6E-09 5.6E-14 106.5 15.9 66 133-200 184-277 (306)
165 1vma_A Cell division protein F 99.1 3.8E-11 1.3E-15 118.2 4.1 98 296-424 97-197 (306)
166 1ls1_A Signal recognition part 99.1 5.9E-11 2E-15 116.3 5.4 115 294-438 91-206 (295)
167 1mv5_A LMRA, multidrug resista 99.1 1E-09 3.5E-14 104.4 13.3 64 134-199 134-225 (243)
168 1sgw_A Putative ABC transporte 99.1 2E-10 6.8E-15 107.4 8.0 126 19-188 49-210 (214)
169 1in4_A RUVB, holliday junction 99.1 1.9E-13 6.7E-18 136.1 -13.3 142 276-440 18-191 (334)
170 2ghi_A Transport protein; mult 99.1 1.3E-09 4.5E-14 104.7 14.0 64 134-199 150-241 (260)
171 2x8a_A Nuclear valosin-contain 99.0 1.7E-13 5.7E-18 133.1 -14.4 136 290-439 33-191 (274)
172 2kjq_A DNAA-related protein; s 99.0 7.3E-11 2.5E-15 104.0 3.8 75 302-440 35-109 (149)
173 1sxj_E Activator 1 40 kDa subu 99.0 2.4E-10 8.1E-15 113.7 7.7 115 305-442 38-162 (354)
174 3euj_A Chromosome partition pr 99.0 9.8E-11 3.4E-15 121.7 4.9 56 278-337 8-63 (483)
175 2bbs_A Cystic fibrosis transme 99.0 3.3E-09 1.1E-13 103.6 15.3 140 18-199 77-246 (290)
176 1n0w_A DNA repair protein RAD5 99.0 1.1E-09 3.6E-14 102.8 11.3 31 299-329 20-52 (243)
177 3e70_C DPA, signal recognition 99.0 2.4E-11 8.1E-16 120.9 -2.3 115 300-429 126-258 (328)
178 3b5x_A Lipid A export ATP-bind 98.9 9.9E-09 3.4E-13 109.6 16.0 65 133-199 474-566 (582)
179 1u0l_A Probable GTPase ENGC; p 98.9 4.5E-11 1.5E-15 117.4 -2.4 99 299-398 165-294 (301)
180 3gd7_A Fusion complex of cysti 98.9 6.8E-09 2.3E-13 105.3 12.8 79 117-198 123-240 (390)
181 4ad8_A DNA repair protein RECN 98.9 5.9E-10 2E-14 117.4 4.9 51 391-441 392-445 (517)
182 3qf4_A ABC transporter, ATP-bi 98.9 7.9E-09 2.7E-13 110.5 12.9 66 133-200 473-566 (587)
183 3qf4_B Uncharacterized ABC tra 98.9 8.7E-09 3E-13 110.4 12.3 64 135-200 487-578 (598)
184 3b60_A Lipid A export ATP-bind 98.9 1.8E-08 6.3E-13 107.5 14.5 65 133-199 474-566 (582)
185 1nij_A Hypothetical protein YJ 98.8 1.3E-10 4.6E-15 114.9 -3.1 34 304-337 5-46 (318)
186 4a82_A Cystic fibrosis transme 98.8 2.2E-08 7.7E-13 106.8 13.8 64 134-199 472-563 (578)
187 3lnc_A Guanylate kinase, GMP k 98.8 9.7E-10 3.3E-14 103.1 2.7 37 291-327 15-52 (231)
188 3lda_A DNA repair protein RAD5 98.8 9.6E-09 3.3E-13 104.7 10.1 34 299-332 174-209 (400)
189 2yl4_A ATP-binding cassette SU 98.8 2.5E-08 8.4E-13 106.8 13.7 62 136-199 480-569 (595)
190 2bdt_A BH3686; alpha-beta prot 98.8 2.6E-12 8.8E-17 116.8 -14.8 119 303-440 2-141 (189)
191 1t9h_A YLOQ, probable GTPase E 98.8 2.6E-10 8.7E-15 112.3 -1.7 102 299-402 169-302 (307)
192 3auy_A DNA double-strand break 98.8 4.5E-09 1.5E-13 106.0 6.4 51 391-441 276-333 (371)
193 1w1w_A Structural maintenance 98.8 4.6E-09 1.6E-13 107.9 6.1 52 390-441 328-383 (430)
194 2px0_A Flagellar biosynthesis 98.8 1.1E-08 3.9E-13 100.0 8.3 100 301-435 103-202 (296)
195 1svm_A Large T antigen; AAA+ f 98.8 2.6E-11 8.9E-16 122.7 -11.1 130 291-424 157-312 (377)
196 3nwj_A ATSK2; P loop, shikimat 98.7 7.8E-10 2.7E-14 105.8 -0.7 53 275-327 16-72 (250)
197 3k1j_A LON protease, ATP-depen 98.7 1.2E-09 4.1E-14 117.2 -1.2 153 280-440 38-227 (604)
198 1qhl_A Protein (cell division 98.7 5E-10 1.7E-14 105.5 -4.9 52 276-336 9-60 (227)
199 3tr0_A Guanylate kinase, GMP k 98.6 1.1E-08 3.8E-13 93.4 3.3 32 297-328 1-32 (205)
200 3kta_A Chromosome segregation 98.6 3E-08 1E-12 89.1 5.6 52 278-333 3-56 (182)
201 1oix_A RAS-related protein RAB 98.6 9.4E-09 3.2E-13 93.3 2.4 36 403-440 153-188 (191)
202 2oap_1 GSPE-2, type II secreti 98.6 8.2E-09 2.8E-13 108.4 1.0 48 291-338 248-295 (511)
203 1ni3_A YCHF GTPase, YCHF GTP-b 98.5 2.1E-09 7E-14 109.2 -5.7 118 299-441 16-169 (392)
204 1lvg_A Guanylate kinase, GMP k 98.5 3.2E-08 1.1E-12 90.9 2.5 121 301-440 2-151 (198)
205 3a00_A Guanylate kinase, GMP k 98.5 3.9E-08 1.3E-12 89.1 2.5 26 303-328 1-26 (186)
206 2j41_A Guanylate kinase; GMP, 98.4 9.2E-08 3.1E-12 87.3 4.0 35 298-332 1-35 (207)
207 2f9l_A RAB11B, member RAS onco 98.4 6.5E-08 2.2E-12 88.0 2.3 35 404-440 130-164 (199)
208 3uie_A Adenylyl-sulfate kinase 98.3 3.4E-08 1.1E-12 90.5 -1.6 53 280-334 3-55 (200)
209 4aby_A DNA repair protein RECN 98.3 1.2E-06 4.1E-11 89.0 9.0 77 114-191 240-380 (415)
210 2qtf_A Protein HFLX, GTP-bindi 98.3 4.4E-07 1.5E-11 91.3 4.9 131 305-440 181-350 (364)
211 2e87_A Hypothetical protein PH 98.3 9.5E-07 3.2E-11 88.4 7.2 106 304-439 168-275 (357)
212 4e22_A Cytidylate kinase; P-lo 98.3 1.1E-07 3.8E-12 90.6 0.3 35 301-335 25-62 (252)
213 3vaa_A Shikimate kinase, SK; s 98.3 4.2E-07 1.4E-11 83.1 3.7 38 290-327 12-49 (199)
214 1kgd_A CASK, peripheral plasma 98.3 2.9E-07 9.8E-12 82.9 2.5 33 302-334 4-37 (180)
215 4eun_A Thermoresistant glucoki 98.2 4.7E-07 1.6E-11 82.8 3.3 38 297-338 23-60 (200)
216 2dr3_A UPF0273 protein PH0284; 98.2 3.4E-06 1.2E-10 78.7 8.9 37 291-327 10-48 (247)
217 1f2t_B RAD50 ABC-ATPase; DNA d 98.2 3E-06 1E-10 74.3 7.3 51 133-184 51-136 (148)
218 2ius_A DNA translocase FTSK; n 98.1 5.3E-08 1.8E-12 101.9 -5.9 132 295-428 159-312 (512)
219 2ce7_A Cell division protein F 98.1 1.7E-06 5.7E-11 90.0 5.3 97 290-439 38-144 (476)
220 1w1w_A Structural maintenance 98.1 8.2E-07 2.8E-11 91.1 2.8 48 277-331 7-54 (430)
221 2r6a_A DNAB helicase, replicat 98.1 1.1E-06 3.9E-11 90.8 3.8 127 290-427 190-327 (454)
222 3tau_A Guanylate kinase, GMP k 98.1 1.8E-06 6.1E-11 79.6 4.2 29 301-329 6-34 (208)
223 1rz3_A Hypothetical protein rb 98.1 7.6E-07 2.6E-11 81.6 1.3 37 300-336 19-55 (201)
224 2xau_A PRE-mRNA-splicing facto 98.1 1.6E-06 5.5E-11 95.4 3.9 123 300-438 106-234 (773)
225 3qf7_A RAD50; ABC-ATPase, ATPa 98.1 3.8E-06 1.3E-10 84.4 6.3 56 133-189 273-363 (365)
226 2vp4_A Deoxynucleoside kinase; 98.1 8.8E-07 3E-11 83.0 1.4 37 297-337 14-50 (230)
227 3t34_A Dynamin-related protein 98.0 5.1E-06 1.8E-10 83.0 6.6 42 291-335 25-68 (360)
228 1zu4_A FTSY; GTPase, signal re 98.0 9.5E-07 3.2E-11 87.3 0.8 44 293-336 95-138 (320)
229 3ney_A 55 kDa erythrocyte memb 98.0 2.2E-06 7.6E-11 78.7 3.2 32 297-328 13-44 (197)
230 3tqc_A Pantothenate kinase; bi 98.0 7.9E-07 2.7E-11 87.9 0.2 53 281-334 65-125 (321)
231 1ixz_A ATP-dependent metallopr 98.0 1.4E-06 4.8E-11 82.4 1.7 57 276-337 25-81 (254)
232 3ice_A Transcription terminati 98.0 1.1E-06 3.9E-11 88.3 0.8 52 276-327 133-198 (422)
233 1iy2_A ATP-dependent metallopr 98.0 1.6E-06 5.6E-11 83.3 1.6 56 277-337 50-105 (278)
234 2zr9_A Protein RECA, recombina 97.9 2.4E-05 8.1E-10 78.1 9.5 94 299-426 57-152 (349)
235 1fnn_A CDC6P, cell division co 97.9 4.4E-05 1.5E-09 75.9 11.2 106 305-441 46-152 (389)
236 1kag_A SKI, shikimate kinase I 97.9 3.9E-06 1.3E-10 74.2 3.1 28 302-329 3-30 (173)
237 3kl4_A SRP54, signal recogniti 97.9 2.4E-05 8.3E-10 80.2 8.9 109 302-438 96-207 (433)
238 3kta_B Chromosome segregation 97.9 1.3E-05 4.4E-10 72.1 6.0 70 133-203 58-161 (173)
239 1knq_A Gluconate kinase; ALFA/ 97.9 4.2E-06 1.4E-10 74.3 2.5 33 301-337 6-38 (175)
240 1ega_A Protein (GTP-binding pr 97.9 2.8E-07 9.6E-12 90.2 -5.9 26 302-327 7-32 (301)
241 3cr8_A Sulfate adenylyltranfer 97.9 2.8E-06 9.5E-11 89.9 1.0 37 299-335 365-402 (552)
242 4a1f_A DNAB helicase, replicat 97.8 2.2E-05 7.7E-10 77.9 7.2 105 292-425 35-139 (338)
243 2qt1_A Nicotinamide riboside k 97.8 7.2E-06 2.5E-10 75.0 3.3 31 298-328 16-46 (207)
244 1f2t_A RAD50 ABC-ATPase; DNA d 97.8 8.9E-06 3E-10 71.1 3.7 30 294-324 15-44 (149)
245 2p67_A LAO/AO transport system 97.8 2.4E-06 8.2E-11 85.0 -1.0 58 278-336 32-89 (341)
246 3qkt_A DNA double-strand break 97.8 3.7E-06 1.3E-10 83.5 0.1 52 132-184 241-327 (339)
247 1cke_A CK, MSSA, protein (cyti 97.7 4.2E-06 1.4E-10 77.4 -0.4 34 303-336 5-41 (227)
248 4eaq_A DTMP kinase, thymidylat 97.7 1.7E-05 5.9E-10 74.3 3.0 43 292-335 12-57 (229)
249 1f6b_A SAR1; gtpases, N-termin 97.6 1.6E-05 5.6E-10 72.1 2.4 42 283-325 6-47 (198)
250 3bh0_A DNAB-like replicative h 97.6 8.6E-05 2.9E-09 72.9 7.6 108 291-425 56-163 (315)
251 2www_A Methylmalonic aciduria 97.6 1.5E-05 5E-10 79.6 1.9 35 302-336 73-107 (349)
252 3lxx_A GTPase IMAP family memb 97.6 0.00018 6E-09 67.2 8.9 29 305-333 31-59 (239)
253 2pez_A Bifunctional 3'-phospho 97.6 2E-05 6.8E-10 70.3 2.1 31 301-332 3-33 (179)
254 1e69_A Chromosome segregation 97.6 7.9E-05 2.7E-09 73.3 6.4 83 114-197 190-310 (322)
255 4ad8_A DNA repair protein RECN 97.5 1.5E-05 5.2E-10 83.6 0.9 35 291-326 49-83 (517)
256 3qks_A DNA double-strand break 97.5 4.6E-05 1.6E-09 70.0 3.7 30 294-324 15-44 (203)
257 3b9p_A CG5977-PA, isoform A; A 97.5 0.00021 7.1E-09 68.8 7.6 75 302-427 53-127 (297)
258 1jjv_A Dephospho-COA kinase; P 97.4 5.8E-05 2E-09 68.7 3.4 22 305-326 4-25 (206)
259 3m6a_A ATP-dependent protease 97.4 2E-05 6.7E-10 83.4 -0.0 58 277-336 84-141 (543)
260 2if2_A Dephospho-COA kinase; a 97.4 5.9E-05 2E-09 68.5 3.0 21 305-325 3-23 (204)
261 1v5w_A DMC1, meiotic recombina 97.4 0.00038 1.3E-08 69.1 8.7 28 299-326 118-145 (343)
262 1m2o_B GTP-binding protein SAR 97.4 0.00015 5.2E-09 65.0 5.3 34 291-325 12-45 (190)
263 2qby_A CDC6 homolog 1, cell di 97.4 8.3E-05 2.8E-09 73.5 3.6 31 301-331 43-73 (386)
264 2gj8_A MNME, tRNA modification 97.4 8.6E-05 2.9E-09 65.6 3.3 26 302-327 3-28 (172)
265 1m7g_A Adenylylsulfate kinase; 97.4 3.1E-05 1.1E-09 71.1 0.3 39 298-336 20-60 (211)
266 2ffh_A Protein (FFH); SRP54, s 97.3 5.7E-05 1.9E-09 77.3 2.2 52 280-336 80-131 (425)
267 1y63_A LMAJ004144AAA protein; 97.3 9E-05 3.1E-09 66.5 3.3 32 295-326 2-33 (184)
268 2qag_A Septin-2, protein NEDD5 97.3 1.9E-05 6.5E-10 79.2 -1.5 50 276-332 17-66 (361)
269 2yvu_A Probable adenylyl-sulfa 97.3 4.6E-05 1.6E-09 68.3 1.2 36 299-334 9-44 (186)
270 2wji_A Ferrous iron transport 97.3 0.00018 6.1E-09 62.9 4.1 24 305-328 5-28 (165)
271 1j8m_F SRP54, signal recogniti 97.2 4.2E-05 1.4E-09 74.6 -0.2 54 279-336 77-131 (297)
272 2ohf_A Protein OLA1, GTP-bindi 97.2 0.00015 5E-09 73.5 3.7 38 299-336 18-66 (396)
273 2dhr_A FTSH; AAA+ protein, hex 97.2 9.9E-05 3.4E-09 77.1 2.4 56 276-336 40-95 (499)
274 2zej_A Dardarin, leucine-rich 97.2 0.00016 5.4E-09 64.4 3.4 25 305-329 4-28 (184)
275 2qor_A Guanylate kinase; phosp 97.2 0.00013 4.3E-09 66.6 2.7 30 299-328 8-37 (204)
276 1mky_A Probable GTP-binding pr 97.2 0.00028 9.5E-09 72.4 5.0 34 305-338 182-227 (439)
277 3auy_A DNA double-strand break 97.1 0.00073 2.5E-08 67.7 7.8 68 116-184 242-359 (371)
278 2z43_A DNA repair and recombin 97.1 0.0012 4.3E-08 64.7 9.1 28 299-326 103-130 (324)
279 3llm_A ATP-dependent RNA helic 97.1 0.00025 8.6E-09 66.2 3.5 121 302-438 75-203 (235)
280 3hr8_A Protein RECA; alpha and 97.1 0.00015 5E-09 72.6 1.9 36 299-334 57-92 (356)
281 1sxj_C Activator 1 40 kDa subu 97.1 4.1E-05 1.4E-09 75.6 -2.1 44 289-332 30-75 (340)
282 2ga8_A Hypothetical 39.9 kDa p 97.1 7.8E-05 2.7E-09 74.3 -0.3 37 291-327 10-48 (359)
283 3t61_A Gluconokinase; PSI-biol 97.0 0.00027 9.2E-09 64.1 3.1 25 303-327 18-42 (202)
284 2wjg_A FEOB, ferrous iron tran 97.0 0.00032 1.1E-08 62.1 3.4 22 305-326 9-30 (188)
285 1q3t_A Cytidylate kinase; nucl 97.0 0.00035 1.2E-08 65.2 3.6 26 300-325 13-38 (236)
286 3cm0_A Adenylate kinase; ATP-b 97.0 0.00028 9.7E-09 62.8 2.8 25 301-325 2-26 (186)
287 1lv7_A FTSH; alpha/beta domain 96.8 0.00038 1.3E-08 65.5 2.4 34 293-328 37-70 (257)
288 2z4s_A Chromosomal replication 96.8 0.00074 2.5E-08 69.3 4.5 25 303-327 130-154 (440)
289 1np6_A Molybdopterin-guanine d 96.8 0.00035 1.2E-08 62.6 1.5 27 304-330 7-33 (174)
290 2npi_A Protein CLP1; CLP1-PCF1 96.8 0.00043 1.5E-08 71.5 2.3 75 118-197 217-335 (460)
291 2q6t_A DNAB replication FORK h 96.7 0.0031 1E-07 64.7 8.5 37 291-327 188-224 (444)
292 1ye8_A Protein THEP1, hypothet 96.7 0.00065 2.2E-08 61.0 3.0 32 148-179 118-152 (178)
293 3kb2_A SPBC2 prophage-derived 96.7 0.00076 2.6E-08 58.8 3.3 23 305-327 3-25 (173)
294 2dy1_A Elongation factor G; tr 96.7 0.00036 1.2E-08 75.4 1.4 38 297-334 3-42 (665)
295 1ypw_A Transitional endoplasmi 96.7 0.00059 2E-08 75.4 2.9 33 297-329 232-264 (806)
296 4ag6_A VIRB4 ATPase, type IV s 96.7 0.00056 1.9E-08 68.8 2.5 35 302-336 34-68 (392)
297 2p5t_B PEZT; postsegregational 96.6 0.00034 1.2E-08 66.1 0.4 30 299-328 28-57 (253)
298 3r20_A Cytidylate kinase; stru 96.6 0.00052 1.8E-08 64.5 1.5 32 303-334 9-43 (233)
299 1kht_A Adenylate kinase; phosp 96.6 0.0012 4.1E-08 58.6 3.7 25 303-327 3-27 (192)
300 1qhx_A CPT, protein (chloramph 96.6 0.0013 4.5E-08 57.9 3.8 27 302-328 2-28 (178)
301 1jal_A YCHF protein; nucleotid 96.5 0.0018 6.3E-08 64.7 5.0 35 303-337 2-47 (363)
302 1vht_A Dephospho-COA kinase; s 96.5 0.0011 3.8E-08 60.7 3.2 23 303-325 4-26 (218)
303 1via_A Shikimate kinase; struc 96.5 0.0011 3.8E-08 58.5 2.9 23 305-327 6-28 (175)
304 3lw7_A Adenylate kinase relate 96.5 0.0013 4.3E-08 57.2 3.2 19 305-323 3-21 (179)
305 3dm5_A SRP54, signal recogniti 96.5 0.01 3.4E-07 60.8 10.3 28 302-329 99-126 (443)
306 2jaq_A Deoxyguanosine kinase; 96.5 0.0013 4.5E-08 59.0 3.4 22 305-326 2-23 (205)
307 3k53_A Ferrous iron transport 96.5 0.0011 3.9E-08 63.0 3.1 24 305-328 5-28 (271)
308 2ze6_A Isopentenyl transferase 96.5 0.0013 4.6E-08 62.2 3.3 23 305-327 3-25 (253)
309 1gtv_A TMK, thymidylate kinase 96.5 0.00037 1.3E-08 63.4 -0.7 26 305-330 2-27 (214)
310 2rhm_A Putative kinase; P-loop 96.4 0.0012 4.1E-08 58.8 2.6 27 301-327 3-29 (193)
311 2v54_A DTMP kinase, thymidylat 96.4 0.0021 7.3E-08 57.8 3.9 26 302-327 3-28 (204)
312 1ly1_A Polynucleotide kinase; 96.4 0.0018 6.3E-08 56.8 3.4 21 305-325 4-24 (181)
313 3iij_A Coilin-interacting nucl 96.4 0.0012 4.1E-08 58.5 2.1 26 301-326 9-34 (180)
314 1ex7_A Guanylate kinase; subst 96.3 0.0018 6.2E-08 58.6 3.1 22 306-327 4-25 (186)
315 2o5v_A DNA replication and rep 96.3 0.0024 8.3E-08 63.7 4.3 58 134-196 259-352 (359)
316 3trf_A Shikimate kinase, SK; a 96.3 0.0022 7.6E-08 56.8 3.6 26 302-327 4-29 (185)
317 1uf9_A TT1252 protein; P-loop, 96.3 0.0019 6.3E-08 58.0 3.1 23 304-326 9-31 (203)
318 2c95_A Adenylate kinase 1; tra 96.2 0.0023 8E-08 57.0 3.4 26 301-326 7-32 (196)
319 2ged_A SR-beta, signal recogni 96.2 0.0028 9.5E-08 56.2 3.8 25 304-328 49-73 (193)
320 1z0j_A RAB-22, RAS-related pro 96.2 0.0035 1.2E-07 53.9 4.3 23 305-327 8-30 (170)
321 1tev_A UMP-CMP kinase; ploop, 96.2 0.0023 7.9E-08 56.8 3.2 24 303-326 3-26 (196)
322 1z2a_A RAS-related protein RAB 96.2 0.0033 1.1E-07 54.0 4.0 23 305-327 7-29 (168)
323 2plr_A DTMP kinase, probable t 96.2 0.0024 8.1E-08 57.6 3.3 28 302-329 3-30 (213)
324 3b1v_A Ferrous iron uptake tra 96.2 0.0031 1.1E-07 60.4 4.2 23 305-327 5-27 (272)
325 2wwf_A Thymidilate kinase, put 96.2 0.0025 8.7E-08 57.6 3.5 26 301-326 8-33 (212)
326 3cf0_A Transitional endoplasmi 96.2 0.0017 5.7E-08 63.0 2.2 31 298-328 44-74 (301)
327 3ake_A Cytidylate kinase; CMP 96.2 0.0025 8.5E-08 57.4 3.2 23 305-327 4-26 (208)
328 1fzq_A ADP-ribosylation factor 96.2 0.0021 7.2E-08 56.9 2.7 23 305-327 18-40 (181)
329 2nzj_A GTP-binding protein REM 96.1 0.0029 1E-07 54.8 3.4 23 305-327 6-28 (175)
330 3q72_A GTP-binding protein RAD 96.1 0.0023 7.8E-08 55.1 2.7 24 305-328 4-27 (166)
331 2dyk_A GTP-binding protein; GT 96.1 0.0029 1E-07 54.0 3.3 23 305-327 3-25 (161)
332 3q85_A GTP-binding protein REM 96.1 0.0032 1.1E-07 54.3 3.5 24 305-328 4-27 (169)
333 1nn5_A Similar to deoxythymidy 96.1 0.003 1E-07 57.2 3.4 26 301-326 7-32 (215)
334 2vli_A Antibiotic resistance p 96.1 0.0022 7.6E-08 56.6 2.5 26 302-327 4-29 (183)
335 2erx_A GTP-binding protein DI- 96.1 0.0043 1.5E-07 53.3 4.2 22 305-326 5-26 (172)
336 3ihw_A Centg3; RAS, centaurin, 96.1 0.0055 1.9E-07 54.4 5.0 28 305-332 22-54 (184)
337 2z0h_A DTMP kinase, thymidylat 96.1 0.0031 1.1E-07 56.3 3.3 23 305-327 2-24 (197)
338 1gvn_B Zeta; postsegregational 96.1 0.0025 8.6E-08 61.5 2.9 26 302-327 32-57 (287)
339 1nks_A Adenylate kinase; therm 96.1 0.0029 9.9E-08 56.1 3.1 23 305-327 3-25 (194)
340 3t1o_A Gliding protein MGLA; G 96.1 0.0033 1.1E-07 55.5 3.4 25 305-329 16-40 (198)
341 2ce2_X GTPase HRAS; signaling 96.1 0.0038 1.3E-07 53.2 3.7 23 305-327 5-27 (166)
342 1c1y_A RAS-related protein RAP 96.1 0.0043 1.5E-07 53.1 4.1 22 305-326 5-26 (167)
343 1z08_A RAS-related protein RAB 96.1 0.0043 1.5E-07 53.4 4.1 23 305-327 8-30 (170)
344 1ek0_A Protein (GTP-binding pr 96.0 0.0042 1.4E-07 53.3 4.0 23 305-327 5-27 (170)
345 3tw8_B RAS-related protein RAB 96.0 0.003 1E-07 54.9 3.0 23 305-327 11-33 (181)
346 1kao_A RAP2A; GTP-binding prot 96.0 0.0044 1.5E-07 52.9 4.0 23 305-327 5-27 (167)
347 1ky3_A GTP-binding protein YPT 96.0 0.0044 1.5E-07 53.9 4.0 23 305-327 10-32 (182)
348 1u8z_A RAS-related protein RAL 96.0 0.0044 1.5E-07 53.0 3.9 23 305-327 6-28 (168)
349 2bwj_A Adenylate kinase 5; pho 96.0 0.0013 4.4E-08 58.9 0.5 28 300-327 9-36 (199)
350 4fcw_A Chaperone protein CLPB; 96.0 0.0021 7.3E-08 61.8 2.1 31 304-334 48-78 (311)
351 1xjc_A MOBB protein homolog; s 96.0 0.0035 1.2E-07 55.8 3.3 26 304-329 5-30 (169)
352 1aky_A Adenylate kinase; ATP:A 96.0 0.0041 1.4E-07 57.0 3.8 26 302-327 3-28 (220)
353 2cxx_A Probable GTP-binding pr 96.0 0.0041 1.4E-07 54.7 3.6 23 305-327 3-25 (190)
354 1g16_A RAS-related protein SEC 96.0 0.0074 2.5E-07 51.8 5.2 23 305-327 5-27 (170)
355 1moz_A ARL1, ADP-ribosylation 96.0 0.0021 7.3E-08 56.3 1.7 22 304-325 19-40 (183)
356 3bgw_A DNAB-like replicative h 96.0 0.016 5.6E-07 59.4 8.6 34 292-325 186-219 (444)
357 1wms_A RAB-9, RAB9, RAS-relate 96.0 0.0048 1.6E-07 53.6 3.9 23 305-327 9-31 (177)
358 3fb4_A Adenylate kinase; psych 95.9 0.0038 1.3E-07 56.8 3.3 22 305-326 2-23 (216)
359 1svi_A GTP-binding protein YSX 95.9 0.0033 1.1E-07 55.7 2.9 24 304-327 24-47 (195)
360 3lxw_A GTPase IMAP family memb 95.9 0.0045 1.5E-07 58.2 3.9 24 305-328 23-46 (247)
361 3pqc_A Probable GTP-binding pr 95.9 0.0034 1.2E-07 55.4 2.9 23 305-327 25-47 (195)
362 2lkc_A Translation initiation 95.9 0.0063 2.2E-07 52.8 4.5 26 302-327 7-32 (178)
363 2fn4_A P23, RAS-related protei 95.9 0.0036 1.2E-07 54.4 3.0 22 305-326 11-32 (181)
364 4dsu_A GTPase KRAS, isoform 2B 95.9 0.0054 1.9E-07 53.8 4.1 23 305-327 6-28 (189)
365 1r2q_A RAS-related protein RAB 95.9 0.0042 1.4E-07 53.3 3.2 22 305-326 8-29 (170)
366 1zd8_A GTP:AMP phosphotransfer 95.9 0.0042 1.4E-07 57.3 3.4 27 301-327 5-31 (227)
367 2oil_A CATX-8, RAS-related pro 95.9 0.0042 1.4E-07 55.1 3.2 23 305-327 27-49 (193)
368 1upt_A ARL1, ADP-ribosylation 95.9 0.0044 1.5E-07 53.4 3.2 22 305-326 9-30 (171)
369 2pt5_A Shikimate kinase, SK; a 95.8 0.0047 1.6E-07 53.7 3.4 22 305-326 2-23 (168)
370 1r8s_A ADP-ribosylation factor 95.8 0.0045 1.5E-07 53.0 3.2 22 305-326 2-23 (164)
371 3dl0_A Adenylate kinase; phosp 95.8 0.0045 1.5E-07 56.4 3.3 23 305-327 2-24 (216)
372 3clv_A RAB5 protein, putative; 95.8 0.0059 2E-07 53.9 4.0 23 305-327 9-31 (208)
373 2hxs_A RAB-26, RAS-related pro 95.8 0.005 1.7E-07 53.5 3.5 23 305-327 8-30 (178)
374 2pbr_A DTMP kinase, thymidylat 95.8 0.0047 1.6E-07 54.8 3.3 23 305-327 2-24 (195)
375 3bc1_A RAS-related protein RAB 95.8 0.0061 2.1E-07 53.5 4.0 23 305-327 13-35 (195)
376 2cdn_A Adenylate kinase; phosp 95.8 0.0056 1.9E-07 55.2 3.8 25 302-326 19-43 (201)
377 1e6c_A Shikimate kinase; phosp 95.8 0.0044 1.5E-07 54.1 3.0 23 304-326 3-25 (173)
378 2y8e_A RAB-protein 6, GH09086P 95.8 0.0057 1.9E-07 53.0 3.7 23 305-327 16-38 (179)
379 1z0f_A RAB14, member RAS oncog 95.8 0.0066 2.3E-07 52.6 4.0 23 305-327 17-39 (179)
380 2a9k_A RAS-related protein RAL 95.8 0.0067 2.3E-07 53.0 4.0 23 305-327 20-42 (187)
381 3con_A GTPase NRAS; structural 95.7 0.005 1.7E-07 54.4 3.2 23 305-327 23-45 (190)
382 1qf9_A UMP/CMP kinase, protein 95.7 0.0049 1.7E-07 54.6 3.0 23 304-326 7-29 (194)
383 2g6b_A RAS-related protein RAB 95.7 0.0053 1.8E-07 53.5 3.2 23 305-327 12-34 (180)
384 3kkq_A RAS-related protein M-R 95.7 0.0068 2.3E-07 53.1 3.9 23 305-327 20-42 (183)
385 1m7b_A RND3/RHOE small GTP-bin 95.7 0.0062 2.1E-07 53.7 3.7 23 305-327 9-31 (184)
386 2bme_A RAB4A, RAS-related prot 95.7 0.0063 2.2E-07 53.3 3.7 23 305-327 12-34 (186)
387 3cbq_A GTP-binding protein REM 95.7 0.004 1.4E-07 55.9 2.4 22 305-326 25-46 (195)
388 1zak_A Adenylate kinase; ATP:A 95.7 0.0048 1.6E-07 56.6 3.0 26 302-327 4-29 (222)
389 3tkl_A RAS-related protein RAB 95.7 0.007 2.4E-07 53.5 3.9 23 305-327 18-40 (196)
390 2w58_A DNAI, primosome compone 95.7 0.005 1.7E-07 55.4 3.0 26 304-329 55-80 (202)
391 2efe_B Small GTP-binding prote 95.7 0.0075 2.6E-07 52.5 4.1 23 305-327 14-36 (181)
392 2iyv_A Shikimate kinase, SK; t 95.7 0.0052 1.8E-07 54.4 3.0 23 304-326 3-25 (184)
393 2cjw_A GTP-binding protein GEM 95.7 0.0056 1.9E-07 54.8 3.2 22 305-326 8-29 (192)
394 3bos_A Putative DNA replicatio 95.6 0.0063 2.2E-07 55.6 3.6 28 302-329 51-78 (242)
395 3iby_A Ferrous iron transport 95.6 0.0052 1.8E-07 58.2 3.1 23 305-327 3-25 (256)
396 1ukz_A Uridylate kinase; trans 95.6 0.006 2.1E-07 54.9 3.3 23 304-326 16-38 (203)
397 1zuh_A Shikimate kinase; alpha 95.6 0.007 2.4E-07 52.8 3.5 23 304-326 8-30 (168)
398 1ksh_A ARF-like protein 2; sma 95.6 0.0061 2.1E-07 53.6 3.1 25 303-327 18-42 (186)
399 3cnl_A YLQF, putative uncharac 95.6 0.0064 2.2E-07 57.9 3.5 29 304-332 100-128 (262)
400 1vg8_A RAS-related protein RAB 95.6 0.0082 2.8E-07 53.7 4.0 23 305-327 10-32 (207)
401 3llu_A RAS-related GTP-binding 95.6 0.0065 2.2E-07 54.3 3.3 25 305-329 22-46 (196)
402 2xb4_A Adenylate kinase; ATP-b 95.6 0.0065 2.2E-07 56.0 3.4 23 305-327 2-24 (223)
403 3a4m_A L-seryl-tRNA(SEC) kinas 95.6 0.0062 2.1E-07 57.6 3.3 25 302-326 3-27 (260)
404 1nrj_B SR-beta, signal recogni 95.6 0.008 2.7E-07 54.4 3.9 24 305-328 14-37 (218)
405 1wf3_A GTP-binding protein; GT 95.6 0.0063 2.2E-07 59.1 3.4 23 305-327 9-31 (301)
406 2dby_A GTP-binding protein; GD 95.6 0.0049 1.7E-07 61.7 2.6 22 305-326 3-24 (368)
407 2bov_A RAla, RAS-related prote 95.6 0.0084 2.9E-07 53.4 4.0 23 305-327 16-38 (206)
408 1mh1_A RAC1; GTP-binding, GTPa 95.5 0.0088 3E-07 52.2 4.0 22 305-326 7-28 (186)
409 2gf9_A RAS-related protein RAB 95.5 0.0089 3E-07 52.8 4.0 23 305-327 24-46 (189)
410 2grj_A Dephospho-COA kinase; T 95.5 0.007 2.4E-07 54.9 3.3 23 304-326 13-35 (192)
411 2fg5_A RAB-22B, RAS-related pr 95.5 0.0083 2.8E-07 53.3 3.8 23 305-327 25-47 (192)
412 3oes_A GTPase rhebl1; small GT 95.5 0.0081 2.8E-07 53.8 3.6 23 305-327 26-48 (201)
413 2gf0_A GTP-binding protein DI- 95.5 0.0085 2.9E-07 53.1 3.8 22 305-326 10-31 (199)
414 3dz8_A RAS-related protein RAB 95.5 0.0064 2.2E-07 53.9 2.9 24 305-328 25-48 (191)
415 2xtp_A GTPase IMAP family memb 95.5 0.0066 2.3E-07 57.0 3.1 23 305-327 24-46 (260)
416 2il1_A RAB12; G-protein, GDP, 95.5 0.0066 2.3E-07 54.1 3.0 23 305-327 28-50 (192)
417 2ew1_A RAS-related protein RAB 95.5 0.0084 2.9E-07 54.2 3.7 23 305-327 28-50 (201)
418 1zbd_A Rabphilin-3A; G protein 95.5 0.0076 2.6E-07 53.9 3.4 23 305-327 10-32 (203)
419 3reg_A RHO-like small GTPase; 95.5 0.0094 3.2E-07 52.9 4.0 23 305-327 25-47 (194)
420 3t5g_A GTP-binding protein RHE 95.5 0.0087 3E-07 52.2 3.7 21 305-325 8-28 (181)
421 2a5j_A RAS-related protein RAB 95.5 0.0074 2.5E-07 53.5 3.2 23 305-327 23-45 (191)
422 3a1s_A Iron(II) transport prot 95.5 0.0074 2.5E-07 57.2 3.4 23 305-327 7-29 (258)
423 2o52_A RAS-related protein RAB 95.4 0.0071 2.4E-07 54.3 3.1 23 305-327 27-49 (200)
424 2h57_A ADP-ribosylation factor 95.4 0.0055 1.9E-07 54.3 2.2 23 305-327 23-45 (190)
425 3t5d_A Septin-7; GTP-binding p 95.4 0.0063 2.1E-07 58.0 2.7 23 305-327 10-32 (274)
426 1z06_A RAS-related protein RAB 95.4 0.01 3.6E-07 52.4 4.0 23 305-327 22-44 (189)
427 1uj2_A Uridine-cytidine kinase 95.4 0.0077 2.6E-07 56.6 3.3 23 305-327 24-46 (252)
428 1zj6_A ADP-ribosylation factor 95.4 0.0075 2.6E-07 53.2 3.1 22 305-326 18-39 (187)
429 4dhe_A Probable GTP-binding pr 95.4 0.0042 1.4E-07 56.5 1.4 24 304-327 30-53 (223)
430 3bwd_D RAC-like GTP-binding pr 95.4 0.0096 3.3E-07 51.8 3.7 24 304-327 9-32 (182)
431 4bas_A ADP-ribosylation factor 95.4 0.0075 2.6E-07 53.5 3.0 22 305-326 19-40 (199)
432 2iwr_A Centaurin gamma 1; ANK 95.4 0.0062 2.1E-07 53.1 2.4 22 305-326 9-30 (178)
433 1e4v_A Adenylate kinase; trans 95.4 0.0075 2.5E-07 55.0 3.0 22 305-326 2-23 (214)
434 2atv_A RERG, RAS-like estrogen 95.4 0.0083 2.8E-07 53.4 3.3 22 305-326 30-51 (196)
435 3i8s_A Ferrous iron transport 95.4 0.0076 2.6E-07 57.6 3.1 23 305-327 5-27 (274)
436 1zd9_A ADP-ribosylation factor 95.4 0.011 3.8E-07 52.3 4.0 23 305-327 24-46 (188)
437 2p5s_A RAS and EF-hand domain 95.4 0.0084 2.9E-07 53.6 3.2 23 305-327 30-52 (199)
438 1x3s_A RAS-related protein RAB 95.3 0.011 3.8E-07 52.1 4.0 23 305-327 17-39 (195)
439 2h17_A ADP-ribosylation factor 95.3 0.007 2.4E-07 53.2 2.6 23 305-327 23-45 (181)
440 1gwn_A RHO-related GTP-binding 95.3 0.01 3.4E-07 53.8 3.7 23 305-327 30-52 (205)
441 2bcg_Y Protein YP2, GTP-bindin 95.3 0.01 3.6E-07 53.1 3.7 23 305-327 10-32 (206)
442 2fh5_B SR-beta, signal recogni 95.3 0.012 3.9E-07 53.2 4.0 24 305-328 9-32 (214)
443 2qu8_A Putative nucleolar GTP- 95.3 0.0086 2.9E-07 55.0 3.1 23 305-327 31-53 (228)
444 2f7s_A C25KG, RAS-related prot 95.3 0.0097 3.3E-07 53.8 3.4 24 305-328 27-50 (217)
445 3iev_A GTP-binding protein ERA 95.3 0.0089 3.1E-07 58.1 3.4 24 304-327 11-34 (308)
446 2q3h_A RAS homolog gene family 95.3 0.0098 3.3E-07 53.0 3.4 23 305-327 22-44 (201)
447 3tlx_A Adenylate kinase 2; str 95.3 0.0088 3E-07 56.0 3.2 25 302-326 28-52 (243)
448 3be4_A Adenylate kinase; malar 95.2 0.0099 3.4E-07 54.4 3.4 26 302-327 4-29 (217)
449 3cph_A RAS-related protein SEC 95.2 0.013 4.3E-07 52.6 4.1 23 305-327 22-44 (213)
450 2f6r_A COA synthase, bifunctio 95.2 0.0086 3E-07 57.4 3.1 22 304-325 76-97 (281)
451 2fv8_A H6, RHO-related GTP-bin 95.2 0.011 3.6E-07 53.4 3.5 23 305-327 27-49 (207)
452 3c5c_A RAS-like protein 12; GD 95.2 0.0099 3.4E-07 52.7 3.3 23 305-327 23-45 (187)
453 2j1l_A RHO-related GTP-binding 95.2 0.0093 3.2E-07 54.2 3.1 22 305-326 36-57 (214)
454 2gco_A H9, RHO-related GTP-bin 95.2 0.012 4E-07 52.8 3.7 23 305-327 27-49 (201)
455 1jwy_B Dynamin A GTPase domain 95.2 0.009 3.1E-07 57.7 3.1 24 305-328 26-49 (315)
456 2g3y_A GTP-binding protein GEM 95.1 0.011 3.8E-07 54.2 3.4 22 305-326 39-60 (211)
457 2fu5_C RAS-related protein RAB 95.1 0.0068 2.3E-07 53.0 1.9 23 305-327 10-32 (183)
458 2wsm_A Hydrogenase expression/ 95.1 0.0098 3.3E-07 54.0 3.0 23 305-327 32-54 (221)
459 3v9p_A DTMP kinase, thymidylat 95.1 0.0098 3.3E-07 55.5 3.0 28 301-328 23-50 (227)
460 1sky_E F1-ATPase, F1-ATP synth 95.1 0.01 3.6E-07 61.1 3.4 42 291-333 140-181 (473)
461 1jbk_A CLPB protein; beta barr 95.1 0.014 4.7E-07 50.9 3.7 25 303-327 43-67 (195)
462 1a7j_A Phosphoribulokinase; tr 95.1 0.0066 2.3E-07 58.7 1.7 25 303-327 5-29 (290)
463 2b6h_A ADP-ribosylation factor 95.0 0.0098 3.3E-07 53.0 2.7 24 304-327 30-53 (192)
464 1ko7_A HPR kinase/phosphatase; 95.0 0.022 7.5E-07 55.7 5.2 34 291-325 133-166 (314)
465 2atx_A Small GTP binding prote 95.0 0.015 5.1E-07 51.5 3.8 23 305-327 20-42 (194)
466 2aka_B Dynamin-1; fusion prote 95.0 0.011 3.6E-07 56.6 2.9 24 305-328 28-51 (299)
467 3def_A T7I23.11 protein; chlor 94.9 0.012 4.1E-07 55.6 3.1 23 305-327 38-60 (262)
468 4edh_A DTMP kinase, thymidylat 94.9 0.013 4.4E-07 54.0 3.2 28 301-328 4-31 (213)
469 1ak2_A Adenylate kinase isoenz 94.9 0.015 5.3E-07 53.7 3.8 26 302-327 15-40 (233)
470 1h65_A Chloroplast outer envel 94.9 0.012 4.2E-07 55.7 3.1 23 305-327 41-63 (270)
471 1sxj_D Activator 1 41 kDa subu 94.9 0.005 1.7E-07 60.2 0.3 37 292-328 45-83 (353)
472 1ltq_A Polynucleotide kinase; 94.9 0.013 4.6E-07 56.1 3.4 21 305-325 4-24 (301)
473 1l8q_A Chromosomal replication 94.9 0.012 4.1E-07 57.2 3.0 28 303-330 37-64 (324)
474 4djt_A GTP-binding nuclear pro 94.9 0.0061 2.1E-07 55.2 0.8 23 305-327 13-35 (218)
475 3lv8_A DTMP kinase, thymidylat 94.9 0.015 5E-07 54.6 3.5 27 302-328 26-52 (236)
476 2h92_A Cytidylate kinase; ross 94.9 0.014 4.8E-07 53.1 3.2 25 303-327 3-27 (219)
477 2hup_A RAS-related protein RAB 94.8 0.013 4.5E-07 52.6 3.0 23 305-327 31-53 (201)
478 3h4m_A Proteasome-activating n 94.8 0.014 4.9E-07 55.3 3.3 27 301-327 49-75 (285)
479 4tmk_A Protein (thymidylate ki 94.8 0.016 5.6E-07 53.3 3.5 27 302-328 2-28 (213)
480 1ypw_A Transitional endoplasmi 94.8 0.0058 2E-07 67.5 0.4 33 296-328 504-536 (806)
481 4gzl_A RAS-related C3 botulinu 94.8 0.018 6.1E-07 51.9 3.6 22 305-326 32-53 (204)
482 1njg_A DNA polymerase III subu 94.8 0.018 6.2E-07 52.0 3.7 24 305-328 47-70 (250)
483 2x77_A ADP-ribosylation factor 94.7 0.0098 3.4E-07 52.5 1.7 23 304-326 23-45 (189)
484 3d3q_A TRNA delta(2)-isopenten 94.7 0.016 5.4E-07 57.3 3.3 24 305-328 9-32 (340)
485 2yc2_C IFT27, small RAB-relate 94.7 0.0072 2.5E-07 53.9 0.8 22 305-326 22-43 (208)
486 3cpj_B GTP-binding protein YPT 94.7 0.021 7.3E-07 52.0 4.0 23 305-327 15-37 (223)
487 3q3j_B RHO-related GTP-binding 94.7 0.021 7.3E-07 51.8 4.0 22 305-326 29-50 (214)
488 2hf9_A Probable hydrogenase ni 94.7 0.015 5.2E-07 52.9 2.9 23 305-327 40-62 (226)
489 4dcu_A GTP-binding protein ENG 94.6 0.014 4.7E-07 60.0 2.8 22 305-326 25-46 (456)
490 2j0v_A RAC-like GTP-binding pr 94.6 0.021 7.1E-07 51.4 3.7 23 305-327 11-33 (212)
491 2ocp_A DGK, deoxyguanosine kin 94.6 0.017 5.7E-07 53.7 3.0 25 303-327 2-26 (241)
492 2p65_A Hypothetical protein PF 94.6 0.017 5.8E-07 50.3 2.9 26 303-328 43-68 (187)
493 3zvl_A Bifunctional polynucleo 94.5 0.02 6.8E-07 58.1 3.5 26 301-326 256-281 (416)
494 3crm_A TRNA delta(2)-isopenten 94.5 0.02 6.8E-07 56.2 3.4 23 305-327 7-29 (323)
495 2r62_A Cell division protease 94.5 0.0057 2E-07 57.6 -0.5 32 293-326 36-67 (268)
496 3tmk_A Thymidylate kinase; pho 94.5 0.022 7.4E-07 52.7 3.4 29 301-329 3-31 (216)
497 3ld9_A DTMP kinase, thymidylat 94.4 0.021 7.2E-07 53.0 3.2 27 302-328 20-46 (223)
498 3a8t_A Adenylate isopentenyltr 94.3 0.025 8.5E-07 55.9 3.7 27 302-328 39-65 (339)
499 1puj_A YLQF, conserved hypothe 94.3 0.025 8.4E-07 54.4 3.6 25 305-329 122-146 (282)
500 3exa_A TRNA delta(2)-isopenten 94.3 0.023 7.7E-07 55.6 3.3 25 303-327 3-27 (322)
No 1
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=3.1e-47 Score=422.47 Aligned_cols=280 Identities=30% Similarity=0.572 Sum_probs=217.7
Q ss_pred HHHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------HHHHHHHHHhhhCCCeEEEEecC
Q psy208 116 PARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAIIWLENYLQNWPTTLLVVSHD 169 (443)
Q Consensus 116 ~~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L~~~~~tviiVSHD 169 (443)
+.++..+|..+||+....++++.+||||||| .++.||.++|++.++|||+||||
T Consensus 525 ~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~~g~tvIivSHd 604 (986)
T 2iw3_A 525 KEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTCGITSITISHD 604 (986)
T ss_dssp HHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHHSCSEEEEECSC
T ss_pred HHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHhCCCEEEEEECC
Confidence 4689999999999755679999999999999 78999999998778899999999
Q ss_pred HHHHhccCCcEEEEeCCeeEEEcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy208 170 RHFLDSVPTDIFHLHSQRIDTYRGNYEAFDKIKTEKLKNQQREIEAQRMHREHVQKFIDTFRYNANRASSVQSKIKQLER 249 (443)
Q Consensus 170 r~fLd~v~~~i~~l~~g~i~~~~G~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~ 249 (443)
++++..+||+|++|++|++..|.|++++|........ .. ..
T Consensus 605 l~~l~~~adrii~L~~G~iv~~~G~~~e~~~~~~~~~------------------~~---------------------~~ 645 (986)
T 2iw3_A 605 SVFLDNVCEYIINYEGLKLRKYKGNFTEFVKKCPAAK------------------AY---------------------EE 645 (986)
T ss_dssp HHHHHHHCSEEEEEETTEEEEEESCHHHHHHHCGGGG------------------GS---------------------SS
T ss_pred HHHHHHhCCEEEEEECCeeecCCCCHHHHHhhhHHHH------------------HH---------------------Hh
Confidence 9999999999999999999878999988753211000 00 00
Q ss_pred CCCCCCCccccccccccCCC------CCCCCCeEEEeeeEEEeCCC-CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHH
Q psy208 250 LPELKPIEKEVEVVLKFPDT------ELLSPPILQLSEVNFEYVPG-KPILTNVCLGATLESRICIVGDNGAGKTTLLKI 322 (443)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~l~~~~l~~~y~~~-~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~ 322 (443)
+.. . ...+.++.+ ...++++|+++|++|+|++. +++|+|+||+|.+|++++|+||||||||||+|+
T Consensus 646 l~~-~------~~~~~~p~~~~~~~~~~~~~~mL~v~nLs~~Y~g~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLkl 718 (986)
T 2iw3_A 646 LSN-T------DLEFKFPEPGYLEGVKTKQKAIVKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINV 718 (986)
T ss_dssp TTT-C------CCCCCCCCCCCCTTCCSTTSEEEEEEEEEECCTTCSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHH
T ss_pred hhh-h------hhhccccccccccccccCCCceEEEEeeEEEeCCCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHH
Confidence 000 0 000111110 11235689999999999642 679999999999999999999999999999999
Q ss_pred HHcCCCCCCceEEEcCceEEEEeccCccccc--ccchhHHHHHH------------------------------------
Q psy208 323 IMGIISPTAGTRTVHRNLKFGYFSQHHVDQL--DMNLRCVQLLE------------------------------------ 364 (443)
Q Consensus 323 l~G~~~p~~G~i~~~~~~~ig~~~Q~~~~~l--~~~~~~~~~~~------------------------------------ 364 (443)
|+|+++|++|+|.++++..++|++|++...+ ....++.+.+.
T Consensus 719 LaGll~P~sG~I~~~~~~~I~yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~ 798 (986)
T 2iw3_A 719 LTGELLPTSGEVYTHENCRIAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGT 798 (986)
T ss_dssp HTTSSCCSEEEEEECTTCCEEEECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTE
T ss_pred HhCCCCCCceEEEEcCccceEeeccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccc
Confidence 9999999999999987778999998642100 00001111000
Q ss_pred -----------------------------------------------------------------------HhCCCCCHH
Q psy208 365 -----------------------------------------------------------------------AAFPGKPQE 373 (443)
Q Consensus 365 -----------------------------------------------------------------------~~~~~~~~~ 373 (443)
.........
T Consensus 799 ~r~~~~i~~r~~~~~~~~~e~~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~ 878 (986)
T 2iw3_A 799 PRRIAGIHSRRKFKNTYEYECSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRK 878 (986)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHH
T ss_pred hhhhhhhhhhhhhcccchhhhhhhhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHH
Confidence 001122356
Q ss_pred HHHHHHhcCCCChhh-hhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 374 EYRRQLGGFGVSGDL-ALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 374 ~~~~~L~~~gl~~~~-~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
.+.++|..+|+.... .++++.+|||||||||+|||+|+.+|++|||||||||||+.++..+.+.|+++
T Consensus 879 ~i~~~Le~lGL~~~~~~~~~~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~ 947 (986)
T 2iw3_A 879 EIEEHCSMLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF 947 (986)
T ss_dssp HHHHHHHHTTCCHHHHHHSCGGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC
T ss_pred HHHHHHHHcCCCchhhcCCCccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh
Confidence 678899999997544 68899999999999999999999999999999999999999999999999876
No 2
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=1.8e-44 Score=382.83 Aligned_cols=276 Identities=23% Similarity=0.276 Sum_probs=201.3
Q ss_pred HHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------HHHHHHHHHhhh---CCCeEEEEe
Q psy208 117 ARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAIIWLENYLQN---WPTTLLVVS 167 (443)
Q Consensus 117 ~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L~~---~~~tviiVS 167 (443)
.++.++|..+|+.. ..++++++||||||| .++.|+.++|++ .++|||+||
T Consensus 137 ~~~~~~l~~lgl~~-~~~~~~~~LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vs 215 (538)
T 1yqt_A 137 GKLEEVVKALELEN-VLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVE 215 (538)
T ss_dssp SCHHHHHHHTTCTT-TTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHHHHHcCCCh-hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 46889999999985 478999999999999 455566665543 488999999
Q ss_pred cCHHHHhccCCcEEEEeCCee--EEEcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy208 168 HDRHFLDSVPTDIFHLHSQRI--DTYRGNYEAFDKIKTEKLKNQQREIEAQRMHREHVQKFIDTFRYNANRASSVQSKIK 245 (443)
Q Consensus 168 HDr~fLd~v~~~i~~l~~g~i--~~~~G~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 245 (443)
||+++++.+||+|++|+++.. ..|...++.-.. + ...... ... . .
T Consensus 216 Hd~~~~~~~~dri~vl~~~~~~~~~~~~~~~~~~~-------------------~---~~~~~~--~~~--~-------~ 262 (538)
T 1yqt_A 216 HDLAVLDYLSDIIHVVYGEPGVYGIFSQPKGTRNG-------------------I---NEFLRG--YLK--D-------E 262 (538)
T ss_dssp SCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHHH-------------------H---HHHHHT--EET--T-------T
T ss_pred CCHHHHHHhCCEEEEEcCcccccccccchhhHHHH-------------------H---HHHhhh--ccc--h-------h
Confidence 999999999999999975421 233444432000 0 000000 000 0 0
Q ss_pred HHhcCCCCCCCccccccccccCCCC--CCCCCeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHH
Q psy208 246 QLERLPELKPIEKEVEVVLKFPDTE--LLSPPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKII 323 (443)
Q Consensus 246 ~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l 323 (443)
. .+... ....+.++... ..+.++++++|+++.|+ + ..|+++||+|.+|+++||+||||||||||+|+|
T Consensus 263 ~-~~~~~-------~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~-~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l 332 (538)
T 1yqt_A 263 N-VRFRP-------YEIKFTKTGERVEIERETLVTYPRLVKDYG-S-FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKML 332 (538)
T ss_dssp T-EECSS-------SCCCCCCSSGGGSSCCCEEEEECCEEEEET-T-EEEEECCEEEETTCEEEEECCTTSSHHHHHHHH
T ss_pred h-hcccc-------cccccccCCcccccCCCeEEEEeeEEEEEC-C-EEEEeCccccCCCCEEEEECCCCCCHHHHHHHH
Confidence 0 00000 00011111111 12456899999999995 3 579999999999999999999999999999999
Q ss_pred HcCCCCCCceEEEcCceEEEEeccCcccccccchhHHHHHHHh-CC-CCCHHHHHHHHhcCCCChhhhhccCCCCCHHHH
Q psy208 324 MGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEAA-FP-GKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQK 401 (443)
Q Consensus 324 ~G~~~p~~G~i~~~~~~~ig~~~Q~~~~~l~~~~~~~~~~~~~-~~-~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGek 401 (443)
+|+++|++|+|.+ ...+||++|++.. ....++.+.+... .. ....+.+.++++.+++. +..++++.+||||||
T Consensus 333 ~Gl~~p~~G~i~~--~~~i~~v~Q~~~~--~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSGGe~ 407 (538)
T 1yqt_A 333 AGVEEPTEGKIEW--DLTVAYKPQYIKA--DYEGTVYELLSKIDASKLNSNFYKTELLKPLGII-DLYDREVNELSGGEL 407 (538)
T ss_dssp HTSSCCSBCCCCC--CCCEEEECSSCCC--CCSSBHHHHHHHHHHHHHTCHHHHHHTTTTTTCG-GGTTSBGGGCCHHHH
T ss_pred hCCCCCCCeEEEE--CceEEEEecCCcC--CCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCCh-hhhcCChhhCCHHHH
Confidence 9999999999976 3579999998643 2334444444321 00 01345678889999996 678899999999999
Q ss_pred HHHHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 402 SRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 402 qRl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
|||+||++|+.+|++|||||||||||+.+++.+.+.|+++
T Consensus 408 qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l 447 (538)
T 1yqt_A 408 QRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHL 447 (538)
T ss_dssp HHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998765
No 3
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=2.9e-43 Score=377.69 Aligned_cols=276 Identities=22% Similarity=0.269 Sum_probs=199.7
Q ss_pred HHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------HHHHHHHHHhhh---CCCeEEEEe
Q psy208 117 ARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAIIWLENYLQN---WPTTLLVVS 167 (443)
Q Consensus 117 ~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L~~---~~~tviiVS 167 (443)
.++.++|..+|+.+ ..++++++||||||| .+..++.++|++ .+.|||+||
T Consensus 207 ~~~~~~L~~lgL~~-~~~~~~~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivs 285 (607)
T 3bk7_A 207 GKFEEVVKELELEN-VLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVE 285 (607)
T ss_dssp SCHHHHHHHTTCTT-GGGSBGGGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHHHHHcCCCc-hhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 47889999999985 478999999999999 455555555533 488999999
Q ss_pred cCHHHHhccCCcEEEEeCCee--EEEcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy208 168 HDRHFLDSVPTDIFHLHSQRI--DTYRGNYEAFDKIKTEKLKNQQREIEAQRMHREHVQKFIDTFRYNANRASSVQSKIK 245 (443)
Q Consensus 168 HDr~fLd~v~~~i~~l~~g~i--~~~~G~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 245 (443)
||+++++.+||+|++|+++.. ..+...++.- + . + ..+.... ... .
T Consensus 286 Hdl~~~~~~adri~vl~~~~~~~g~~~~~~~~~----~----~-----------i---~~~~~~~--~~~---------~ 332 (607)
T 3bk7_A 286 HDLAVLDYLSDVIHVVYGEPGVYGIFSKPKGTR----N----G-----------I---NEFLQGY--LKD---------E 332 (607)
T ss_dssp SCHHHHHHHCSEEEEEESCTTTEEEECCCEEHH----H----H-----------H---HHHHHTE--ETT---------T
T ss_pred cChHHHHhhCCEEEEECCCccccceeccchhHH----H----H-----------H---HHHHhhc--chh---------h
Confidence 999999999999999986422 1223333310 0 0 0 0000000 000 0
Q ss_pred HHhcCCCCCCCccccccccccCCCC--CCCCCeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHH
Q psy208 246 QLERLPELKPIEKEVEVVLKFPDTE--LLSPPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKII 323 (443)
Q Consensus 246 ~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l 323 (443)
. .+... ....+.+.... ..+.++++++|+++.|++ ..|+++||+|.+|+++||+||||||||||+|+|
T Consensus 333 ~-~~~~~-------~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~--~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l 402 (607)
T 3bk7_A 333 N-VRFRP-------YEIRFTKLSERVDVERETLVEYPRLVKDYGS--FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKML 402 (607)
T ss_dssp T-EECCS-------SCCCCCCSTTSCCCCCCEEEEECCEEEECSS--CEEEECCEEEETTCEEEEECCTTSSHHHHHHHH
T ss_pred h-hhccc-------cccccccCCCcccccCceEEEEeceEEEecc--eEEEecccccCCCCEEEEECCCCCCHHHHHHHH
Confidence 0 00000 00111111111 123568999999999953 479999999999999999999999999999999
Q ss_pred HcCCCCCCceEEEcCceEEEEeccCcccccccchhHHHHHHHh-CCC-CCHHHHHHHHhcCCCChhhhhccCCCCCHHHH
Q psy208 324 MGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEAA-FPG-KPQEEYRRQLGGFGVSGDLALQFVGSLSGGQK 401 (443)
Q Consensus 324 ~G~~~p~~G~i~~~~~~~ig~~~Q~~~~~l~~~~~~~~~~~~~-~~~-~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGek 401 (443)
+|+++|++|+|.+ ...+||++|++.. ....++.+.+... ... ...+.+.++++.+++. +..++++.+||||||
T Consensus 403 ~Gl~~p~~G~I~~--~~~i~~v~Q~~~~--~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSGGe~ 477 (607)
T 3bk7_A 403 AGVEEPTEGKVEW--DLTVAYKPQYIKA--EYEGTVYELLSKIDSSKLNSNFYKTELLKPLGII-DLYDRNVEDLSGGEL 477 (607)
T ss_dssp HTSSCCSBSCCCC--CCCEEEECSSCCC--CCSSBHHHHHHHHHHHHHHCHHHHHHTHHHHTCT-TTTTSBGGGCCHHHH
T ss_pred hcCCCCCceEEEE--eeEEEEEecCccC--CCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCCc-hHhcCChhhCCHHHH
Confidence 9999999999976 3569999998643 2334554444321 000 1245567889999996 678899999999999
Q ss_pred HHHHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 402 SRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 402 qRl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
|||+||++|+.+|++|||||||+|||+.++..+.+.|+++
T Consensus 478 QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l 517 (607)
T 3bk7_A 478 QRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHL 517 (607)
T ss_dssp HHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999865
No 4
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=4.2e-42 Score=364.08 Aligned_cols=282 Identities=20% Similarity=0.212 Sum_probs=200.8
Q ss_pred HHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------HHHHHHHHHhhhC--CCeEEEEec
Q psy208 117 ARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAIIWLENYLQNW--PTTLLVVSH 168 (443)
Q Consensus 117 ~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L~~~--~~tviiVSH 168 (443)
.++++++..+|+.. ..++++.+||||||| .+..||.++|+++ +.|||+|||
T Consensus 117 ~~~~~~l~~l~l~~-~~~~~~~~LSgGe~Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~g~tii~vsH 195 (538)
T 3ozx_A 117 GKKDEVKELLNMTN-LWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDH 195 (538)
T ss_dssp SCHHHHHHHTTCGG-GTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCTTSEEEEECS
T ss_pred HHHHHHHHHcCCch-hhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHhCCCEEEEEEe
Confidence 46888999999975 468999999999999 5666777776543 789999999
Q ss_pred CHHHHhccCCcEEEEeCCeeE--EEcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy208 169 DRHFLDSVPTDIFHLHSQRID--TYRGNYEAFDKIKTEKLKNQQREIEAQRMHREHVQKFIDTFRYNANRASSVQSKIKQ 246 (443)
Q Consensus 169 Dr~fLd~v~~~i~~l~~g~i~--~~~G~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 246 (443)
|+++++.+||+|++|+++... .+...|.. ++ . +..++....... .
T Consensus 196 dl~~~~~~~d~i~vl~~~~~~~g~~~~~~~~----~~--------~----------~~~~~~g~~~~~-----------~ 242 (538)
T 3ozx_A 196 DLIVLDYLTDLIHIIYGESSVYGRVSKSYAA----RV--------G----------INNFLKGYLPAE-----------N 242 (538)
T ss_dssp CHHHHHHHCSEEEEEEEETTTEEEECCCEEH----HH--------H----------HHHHHHTEETTT-----------T
T ss_pred ChHHHHhhCCEEEEecCCcccccccchhhhH----HH--------H----------HHHHHhhhchhh-----------h
Confidence 999999999999999764321 22233321 00 0 000000000000 0
Q ss_pred HhcCCCCCCCccccccccccCCCCCCCCCeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcC
Q psy208 247 LERLPELKPIEKEVEVVLKFPDTELLSPPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGI 326 (443)
Q Consensus 247 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~ 326 (443)
.+............. ........+.++++++|+++.|++ ..|.++||+|.+|+++||+||||||||||+|+|+|+
T Consensus 243 -~~~r~~~~~~~~~~~--~~~~~~~~~~~~l~~~~l~~~~~~--~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl 317 (538)
T 3ozx_A 243 -MKIRPDEIKFMLKEV--SDLDLSKDLKTKMKWTKIIKKLGD--FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGE 317 (538)
T ss_dssp -EECSSSCCCCSCC------------CCEEEEECCEEEEETT--EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred -hhccchhhhcccccc--ccccccccccceEEEcceEEEECC--EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 000000000000000 000000123568999999999953 578889999999999999999999999999999999
Q ss_pred CCCCCceEEEcCceEEEEeccCcccccccchhHHHHHHHhCCC---CCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHH
Q psy208 327 ISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEAAFPG---KPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSR 403 (443)
Q Consensus 327 ~~p~~G~i~~~~~~~ig~~~Q~~~~~l~~~~~~~~~~~~~~~~---~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqR 403 (443)
++|++|+|.+.. ..++|++|+... ....++.+++...... .....+..++..+++. +..++++.+||||||||
T Consensus 318 ~~p~~G~i~~~~-~~i~~~~q~~~~--~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSGGq~QR 393 (538)
T 3ozx_A 318 ITADEGSVTPEK-QILSYKPQRIFP--NYDGTVQQYLENASKDALSTSSWFFEEVTKRLNLH-RLLESNVNDLSGGELQK 393 (538)
T ss_dssp SCCSBCCEESSC-CCEEEECSSCCC--CCSSBHHHHHHHHCSSTTCTTSHHHHHTTTTTTGG-GCTTSBGGGCCHHHHHH
T ss_pred CCCCCcEEEECC-eeeEeechhccc--ccCCCHHHHHHHhhhhccchhHHHHHHHHHHcCCH-HHhcCChhhCCHHHHHH
Confidence 999999998654 468999998532 2345666665432211 2234567888899986 57889999999999999
Q ss_pred HHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 404 VAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 404 l~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
|+|||+|+.+|++|||||||+|||+.++..+.+.|+++
T Consensus 394 v~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l 431 (538)
T 3ozx_A 394 LYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRV 431 (538)
T ss_dssp HHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998765
No 5
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.2e-40 Score=352.07 Aligned_cols=279 Identities=20% Similarity=0.246 Sum_probs=196.1
Q ss_pred CHHHHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------HHHHHHHHHhh---hCCCeEE
Q psy208 114 KAPARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAIIWLENYLQ---NWPTTLL 164 (443)
Q Consensus 114 ~~~~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L~---~~~~tvi 164 (443)
....++.++|+.+|+.. ..++++.+||||||| .++.++.++|+ +.+.|||
T Consensus 197 ~~~~~~~~~l~~~gl~~-~~~~~~~~LSgGe~Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi 275 (608)
T 3j16_B 197 KSPEDVKRYIKILQLEN-VLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVI 275 (608)
T ss_dssp SCHHHHHHHHHHHTCTG-GGGSCTTTCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEE
T ss_pred hHHHHHHHHHHHcCCcc-hhCCChHHCCHHHHHHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEE
Confidence 34578999999999985 578999999999999 45556666554 4478999
Q ss_pred EEecCHHHHhccCCcEEEEeCCeeE--EEcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy208 165 VVSHDRHFLDSVPTDIFHLHSQRID--TYRGNYEAFDKIKTEKLKNQQREIEAQRMHREHVQKFIDTFRYNANRASSVQS 242 (443)
Q Consensus 165 iVSHDr~fLd~v~~~i~~l~~g~i~--~~~G~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 242 (443)
+||||+++++.+||+|++|+++... .+...++. ++ . ...++..
T Consensus 276 ~vtHdl~~~~~~~drv~vl~~~~~~~~~~~~~~~~----~~-----~-------------~~~~~~~------------- 320 (608)
T 3j16_B 276 CVEHDLSVLDYLSDFVCIIYGVPSVYGVVTLPASV----RE-----G-------------INIFLDG------------- 320 (608)
T ss_dssp EECSCHHHHHHHCSEEEEEESCTTTEEEECCCEEH----HH-----H-------------HHHHHHT-------------
T ss_pred EEeCCHHHHHHhCCEEEEEeCCccccceecCchhH----HH-----H-------------HHHhhcc-------------
Confidence 9999999999999999999865431 11112111 00 0 0000000
Q ss_pred HHHHHhcCCCCCCCccccccccccCCCCCCCCCeEEEeeeEEEeCCCCceeeeeeEEEeCC-----CEEEEECCCCCcHH
Q psy208 243 KIKQLERLPELKPIEKEVEVVLKFPDTELLSPPILQLSEVNFEYVPGKPILTNVCLGATLE-----SRICIVGDNGAGKT 317 (443)
Q Consensus 243 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~~il~~vsl~i~~G-----e~i~iiG~NGsGKS 317 (443)
...............+... .......+..++++++|++...+++++||++.+| |+++|+||||||||
T Consensus 321 ------~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~y~~~~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKS 392 (608)
T 3j16_B 321 ------HIPAENLRFRTEALQFRIA--DATEDLQNDSASRAFSYPSLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKT 392 (608)
T ss_dssp ------EETTTTEECSSSCCCCCCS--SSSCCCCCCSSSSCCEECCEEEECSSCEEEECCEECCTTCEEEEESCTTSSHH
T ss_pred ------ccchhhhcccccccccccc--ccccceeeeccceeEEecCcccccCceEEEEecCccccceEEEEECCCCCcHH
Confidence 0000000000000011110 1111112233678888965456899999999999 88999999999999
Q ss_pred HHHHHHHcCCCCCCceEEEcCceEEEEeccCcccccccchhHHHHHHHhCCC--CCHHHHHHHHhcCCCChhhhhccCCC
Q psy208 318 TLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEAAFPG--KPQEEYRRQLGGFGVSGDLALQFVGS 395 (443)
Q Consensus 318 TLlk~l~G~~~p~~G~i~~~~~~~ig~~~Q~~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~L~~~gl~~~~~~~~~~~ 395 (443)
||+|+|+|+++|++|+.. ....++|++|+.... ...++.+++...... .....+..++..+++. +..++++.+
T Consensus 393 TLlk~l~Gl~~p~~G~~~--~~~~i~~~~q~~~~~--~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~ 467 (608)
T 3j16_B 393 TLIKLLAGALKPDEGQDI--PKLNVSMKPQKIAPK--FPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRID-DIIDQEVQH 467 (608)
T ss_dssp HHHHHHHTSSCCSBCCCC--CSCCEEEECSSCCCC--CCSBHHHHHHHHCSSTTTSHHHHHHTHHHHTST-TTSSSBSSS
T ss_pred HHHHHHhcCCCCCCCcCc--cCCcEEEeccccccc--CCccHHHHHHHHhhcccccHHHHHHHHHHcCCh-hhhcCChhh
Confidence 999999999999999842 345699999985322 233555555433221 2345567788899986 578899999
Q ss_pred CCHHHHHHHHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 396 LSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 396 LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
|||||||||+|||+|+.+|++|||||||+|||+.++..+.+.|+++
T Consensus 468 LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l 513 (608)
T 3j16_B 468 LSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRF 513 (608)
T ss_dssp CCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999988765
No 6
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=1.3e-38 Score=367.59 Aligned_cols=163 Identities=28% Similarity=0.402 Sum_probs=132.0
Q ss_pred eEEEeeeEEEeCCC--CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcC-----------ceEE
Q psy208 276 ILQLSEVNFEYVPG--KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR-----------NLKF 342 (443)
Q Consensus 276 ~l~~~~l~~~y~~~--~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~i 342 (443)
.|+++||+|+|++. .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+++ +..+
T Consensus 1030 ~i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i 1109 (1284)
T 3g5u_A 1030 NVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQL 1109 (1284)
T ss_dssp CEEEEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTTSC
T ss_pred cEEEEEEEEECCCCCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHHhce
Confidence 59999999999642 3699999999999999999999999999999999999999999999864 2359
Q ss_pred EEeccCcccccccchhHHHHHHHhCC--CCCHHHHHHHHhcCCCCh------hhh----hccCCCCCHHHHHHHHHHHHh
Q psy208 343 GYFSQHHVDQLDMNLRCVQLLEAAFP--GKPQEEYRRQLGGFGVSG------DLA----LQFVGSLSGGQKSRVAFARMC 410 (443)
Q Consensus 343 g~~~Q~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~L~~~gl~~------~~~----~~~~~~LSgGekqRl~lA~al 410 (443)
+|+||++. + ...++.+++....+ ....+++.+.+...++.. +.. .....+|||||||||+|||||
T Consensus 1110 ~~v~Q~~~--l-~~~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal 1186 (1284)
T 3g5u_A 1110 GIVSQEPI--L-FDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARAL 1186 (1284)
T ss_dssp EEEESSCC--C-CSSBHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHH
T ss_pred EEECCCCc--c-ccccHHHHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHH
Confidence 99999973 2 24577787753222 234556666555554421 111 224568999999999999999
Q ss_pred ccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 411 MAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 411 ~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
+.+|++|||||||++||+.+.+.+.+.|.++
T Consensus 1187 ~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~ 1217 (1284)
T 3g5u_A 1187 VRQPHILLLDEATSALDTESEKVVQEALDKA 1217 (1284)
T ss_dssp HHCCSSEEEESCSSSCCHHHHHHHHHHHHHH
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999998764
No 7
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=5.1e-39 Score=313.40 Aligned_cols=165 Identities=28% Similarity=0.381 Sum_probs=140.5
Q ss_pred CeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-------------eE
Q psy208 275 PILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-------------LK 341 (443)
Q Consensus 275 ~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-------------~~ 341 (443)
++|+++||+++|+++.++|+|+||+|++|++++|+||||||||||+|+|+|+++|++|+|.+.+. ..
T Consensus 6 ~~l~i~~ls~~y~~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ 85 (275)
T 3gfo_A 6 YILKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRES 85 (275)
T ss_dssp EEEEEEEEEEECTTSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHS
T ss_pred cEEEEEEEEEEECCCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhCc
Confidence 47999999999975556999999999999999999999999999999999999999999988642 25
Q ss_pred EEEeccCcccccccchhHHHHHHH--hCCCCC----HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCC
Q psy208 342 FGYFSQHHVDQLDMNLRCVQLLEA--AFPGKP----QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPN 415 (443)
Q Consensus 342 ig~~~Q~~~~~l~~~~~~~~~~~~--~~~~~~----~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~ 415 (443)
+||++|++...+. ..++.+++.. ...... .+.+.+++..+|+. +..++++.+|||||||||+|||||+.+|+
T Consensus 86 ig~v~Q~~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGqkQRv~iAraL~~~P~ 163 (275)
T 3gfo_A 86 IGIVFQDPDNQLF-SASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIE-HLKDKPTHCLSFGQKKRVAIAGVLVMEPK 163 (275)
T ss_dssp EEEECSSGGGTCC-SSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCG-GGTTSBGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred EEEEEcCcccccc-cCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-hhhcCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 9999998743333 4577666542 122222 23577889999995 67889999999999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 416 FLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 416 lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
+|||||||++||+.++..+.+.|.++
T Consensus 164 lLlLDEPts~LD~~~~~~i~~~l~~l 189 (275)
T 3gfo_A 164 VLILDEPTAGLDPMGVSEIMKLLVEM 189 (275)
T ss_dssp EEEEECTTTTCCHHHHHHHHHHHHHH
T ss_pred EEEEECccccCCHHHHHHHHHHHHHH
Confidence 99999999999999999999998765
No 8
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=2.7e-39 Score=308.64 Aligned_cols=164 Identities=29% Similarity=0.353 Sum_probs=138.6
Q ss_pred eEEEeeeEEEeCCC---CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-------------
Q psy208 276 ILQLSEVNFEYVPG---KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN------------- 339 (443)
Q Consensus 276 ~l~~~~l~~~y~~~---~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------------- 339 (443)
+|+++||+++|+++ .++|+|+||+|.+|++++|+||||||||||+|+|+|+++|++|+|.+.+.
T Consensus 1 ~l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~ 80 (235)
T 3tif_A 1 MVKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80 (235)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHH
T ss_pred CEEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHH
Confidence 48999999999632 36999999999999999999999999999999999999999999998641
Q ss_pred --eEEEEeccCcccccccchhHHHHHHHh--CC---CCC----HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHH
Q psy208 340 --LKFGYFSQHHVDQLDMNLRCVQLLEAA--FP---GKP----QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFAR 408 (443)
Q Consensus 340 --~~ig~~~Q~~~~~l~~~~~~~~~~~~~--~~---~~~----~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~ 408 (443)
..+||++|++. +.+..++.+++... .. ... .+.+.++++.+++.....++++.+|||||||||+|||
T Consensus 81 ~~~~i~~v~Q~~~--l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAr 158 (235)
T 3tif_A 81 RRDKIGFVFQQFN--LIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIAR 158 (235)
T ss_dssp HHHHEEEECTTCC--CCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHH
T ss_pred hhccEEEEecCCc--cCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHH
Confidence 24999999863 45556777776431 11 122 2356788999999754458999999999999999999
Q ss_pred HhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 409 MCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 409 al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
||+.+|++|||||||++||+.++..+.+.|.++
T Consensus 159 al~~~p~llllDEPts~LD~~~~~~i~~~l~~l 191 (235)
T 3tif_A 159 ALANNPPIILADQPTWALDSKTGEKIMQLLKKL 191 (235)
T ss_dssp HHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHH
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999765
No 9
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=2.6e-38 Score=299.69 Aligned_cols=163 Identities=30% Similarity=0.391 Sum_probs=138.7
Q ss_pred CeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc---------------
Q psy208 275 PILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN--------------- 339 (443)
Q Consensus 275 ~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~--------------- 339 (443)
++|+++|++++|+ ++++|+|+||+|++|++++|+||||||||||+|+|+|+++|++|+|.+.+.
T Consensus 3 ~~l~~~~l~~~y~-~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 81 (224)
T 2pcj_A 3 EILRAENIKKVIR-GYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRN 81 (224)
T ss_dssp EEEEEEEEEEEET-TEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHH
T ss_pred cEEEEEeEEEEEC-CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHh
Confidence 4799999999996 478999999999999999999999999999999999999999999988531
Q ss_pred eEEEEeccCcccccccchhHHHHHHHh--CCCCC----HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccC
Q psy208 340 LKFGYFSQHHVDQLDMNLRCVQLLEAA--FPGKP----QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAA 413 (443)
Q Consensus 340 ~~ig~~~Q~~~~~l~~~~~~~~~~~~~--~~~~~----~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~ 413 (443)
..++|++|++. +....++.+++... ..... .+.+.+++..+++. +..++++.+|||||||||+||+||+.+
T Consensus 82 ~~i~~v~q~~~--l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGq~qrv~laral~~~ 158 (224)
T 2pcj_A 82 RKLGFVFQFHY--LIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLG-DKLSRKPYELSGGEQQRVAIARALANE 158 (224)
T ss_dssp HHEEEECSSCC--CCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCT-TCTTCCGGGSCHHHHHHHHHHHHTTTC
T ss_pred CcEEEEecCcc--cCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCc-hhhhCChhhCCHHHHHHHHHHHHHHcC
Confidence 24999999863 44455666665321 11111 24567889999996 567899999999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 414 PNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 414 p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
|++|||||||++||+.+++.+.+.|.++
T Consensus 159 p~lllLDEPt~~LD~~~~~~~~~~l~~l 186 (224)
T 2pcj_A 159 PILLFADEPTGNLDSANTKRVMDIFLKI 186 (224)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999998765
No 10
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=1.1e-38 Score=311.90 Aligned_cols=167 Identities=30% Similarity=0.430 Sum_probs=140.0
Q ss_pred CCCeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-------------
Q psy208 273 SPPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN------------- 339 (443)
Q Consensus 273 ~~~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------------- 339 (443)
..++|+++||+++|+ ++++|+|+||+|.+|++++|+||||||||||+|+|+|+++|++|+|.+.+.
T Consensus 18 ~~~~l~~~~l~~~y~-~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~ 96 (279)
T 2ihy_A 18 SHMLIQLDQIGRMKQ-GKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVR 96 (279)
T ss_dssp -CEEEEEEEEEEEET-TEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHH
T ss_pred CCceEEEEeEEEEEC-CEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHc
Confidence 345899999999996 568999999999999999999999999999999999999999999988641
Q ss_pred eEEEEeccCcccccccchhHHHHHHHhC-------CCCC---HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHH
Q psy208 340 LKFGYFSQHHVDQLDMNLRCVQLLEAAF-------PGKP---QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARM 409 (443)
Q Consensus 340 ~~ig~~~Q~~~~~l~~~~~~~~~~~~~~-------~~~~---~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~a 409 (443)
..+||++|++...+....++.+++.... .... .+.+.+++..+|+. +..++++.+|||||||||+||||
T Consensus 97 ~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgGqkqRv~lAra 175 (279)
T 2ihy_A 97 QHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMS-AKAQQYIGYLSTGEKQRVMIARA 175 (279)
T ss_dssp TTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCG-GGTTSBGGGSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCCh-hHhcCChhhCCHHHHHHHHHHHH
Confidence 2489999985322333457777764311 0111 23567889999995 57789999999999999999999
Q ss_pred hccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 410 CMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 410 l~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
|+.+|++|||||||++||+.+++.+.+.|.++
T Consensus 176 L~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l 207 (279)
T 2ihy_A 176 LMGQPQVLILDEPAAGLDFIARESLLSILDSL 207 (279)
T ss_dssp HHTCCSEEEEESTTTTCCHHHHHHHHHHHHHH
T ss_pred HhCCCCEEEEeCCccccCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999765
No 11
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=6e-38 Score=304.03 Aligned_cols=163 Identities=21% Similarity=0.334 Sum_probs=139.5
Q ss_pred CeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-------------eE
Q psy208 275 PILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-------------LK 341 (443)
Q Consensus 275 ~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-------------~~ 341 (443)
++|+++||+++|+ ++++|+|+||+|++|++++|+||||||||||+|+|+|+++|++|+|.+.+. ..
T Consensus 23 ~~l~i~~l~~~y~-~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~ 101 (263)
T 2olj_A 23 QMIDVHQLKKSFG-SLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREE 101 (263)
T ss_dssp CSEEEEEEEEEET-TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHH
T ss_pred heEEEEeEEEEEC-CEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCc
Confidence 4799999999995 568999999999999999999999999999999999999999999988641 14
Q ss_pred EEEeccCcccccccchhHHHHHHH---hCCCCC----HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCC
Q psy208 342 FGYFSQHHVDQLDMNLRCVQLLEA---AFPGKP----QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAP 414 (443)
Q Consensus 342 ig~~~Q~~~~~l~~~~~~~~~~~~---~~~~~~----~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p 414 (443)
+||++|++. +....++.+++.. ...... .+.+.++++.+++. +..++++.+|||||||||+|||||+.+|
T Consensus 102 i~~v~Q~~~--l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGqkQRv~lAraL~~~p 178 (263)
T 2olj_A 102 VGMVFQRFN--LFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLK-DKAHAYPDSLSGGQAQRVAIARALAMEP 178 (263)
T ss_dssp EEEECSSCC--CCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCG-GGTTSCGGGSCHHHHHHHHHHHHHTTCC
T ss_pred EEEEeCCCc--CCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCc-hHhcCChhhCCHHHHHHHHHHHHHHCCC
Confidence 999999863 4455577666643 122222 24567889999995 5678999999999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 415 NFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 415 ~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
++|||||||++||+.+++.+.+.|+++
T Consensus 179 ~lllLDEPts~LD~~~~~~~~~~l~~l 205 (263)
T 2olj_A 179 KIMLFDEPTSALDPEMVGEVLSVMKQL 205 (263)
T ss_dssp SEEEEESTTTTSCHHHHHHHHHHHHHH
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999765
No 12
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=8.2e-38 Score=303.10 Aligned_cols=163 Identities=27% Similarity=0.422 Sum_probs=139.2
Q ss_pred CeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc---------------
Q psy208 275 PILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN--------------- 339 (443)
Q Consensus 275 ~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~--------------- 339 (443)
++|+++||+++|+ ++++|+|+||+|++|++++|+||||||||||+|+|+|+++|++|+|.+.+.
T Consensus 5 ~~l~i~~l~~~y~-~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 83 (262)
T 1b0u_A 5 NKLHVIDLHKRYG-GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVA 83 (262)
T ss_dssp CCEEEEEEEEEET-TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEES
T ss_pred ceEEEeeEEEEEC-CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccccccccccccc
Confidence 4799999999995 568999999999999999999999999999999999999999999987541
Q ss_pred ---------eEEEEeccCcccccccchhHHHHHHH---hCCCCC----HHHHHHHHhcCCCChhh-hhccCCCCCHHHHH
Q psy208 340 ---------LKFGYFSQHHVDQLDMNLRCVQLLEA---AFPGKP----QEEYRRQLGGFGVSGDL-ALQFVGSLSGGQKS 402 (443)
Q Consensus 340 ---------~~ig~~~Q~~~~~l~~~~~~~~~~~~---~~~~~~----~~~~~~~L~~~gl~~~~-~~~~~~~LSgGekq 402 (443)
..+||++|++ .+....++.+++.. ...... .+.+.+++..+|+. +. .++++.+|||||||
T Consensus 84 ~~~~~~~~~~~i~~v~Q~~--~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~~LSgGq~q 160 (262)
T 1b0u_A 84 DKNQLRLLRTRLTMVFQHF--NLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGID-ERAQGKYPVHLSGGQQQ 160 (262)
T ss_dssp CHHHHHHHHHHEEEECSSC--CCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCC-HHHHTSCGGGSCHHHHH
T ss_pred ChhhHHHHhcceEEEecCc--ccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCC-chhhcCCcccCCHHHHH
Confidence 1389999985 34455677766643 122222 24567889999996 45 78999999999999
Q ss_pred HHHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 403 RVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 403 Rl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
||+|||||+.+|++|||||||++||+.+++.+.+.|.++
T Consensus 161 Rv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l 199 (262)
T 1b0u_A 161 RVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQL 199 (262)
T ss_dssp HHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998765
No 13
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=5.5e-38 Score=303.48 Aligned_cols=164 Identities=21% Similarity=0.230 Sum_probs=140.4
Q ss_pred CCeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc------------eE
Q psy208 274 PPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN------------LK 341 (443)
Q Consensus 274 ~~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------------~~ 341 (443)
.++|+++||+++|+ ++++|+|+||+|++|++++|+||||||||||+|+|+|+++|++|+|.+.+. ..
T Consensus 5 ~~~l~i~~l~~~y~-~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 83 (257)
T 1g6h_A 5 MEILRTENIVKYFG-EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYG 83 (257)
T ss_dssp CEEEEEEEEEEEET-TEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHT
T ss_pred CcEEEEeeeEEEEC-CEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 34799999999995 568999999999999999999999999999999999999999999988641 24
Q ss_pred EEEeccCcccccccchhHHHHHHHhC-C---C-----------C-C---HHHHHHHHhcCCCChhhhhccCCCCCHHHHH
Q psy208 342 FGYFSQHHVDQLDMNLRCVQLLEAAF-P---G-----------K-P---QEEYRRQLGGFGVSGDLALQFVGSLSGGQKS 402 (443)
Q Consensus 342 ig~~~Q~~~~~l~~~~~~~~~~~~~~-~---~-----------~-~---~~~~~~~L~~~gl~~~~~~~~~~~LSgGekq 402 (443)
+||++|++. +....++.+++.... . . . . ...+.+++..+|+. +..++++.+|||||||
T Consensus 84 i~~v~q~~~--l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkQ 160 (257)
T 1g6h_A 84 IVRTFQTPQ--PLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLS-HLYDRKAGELSGGQMK 160 (257)
T ss_dssp EEECCCCCG--GGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCG-GGTTSBGGGSCHHHHH
T ss_pred EEEEccCCc--cCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCc-hhhCCCchhCCHHHHH
Confidence 999999863 445667777775321 1 1 1 1 24567889999995 5778999999999999
Q ss_pred HHHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 403 RVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 403 Rl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
||+|||||+.+|++|||||||++||+.+++.+.+.|.++
T Consensus 161 rv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l 199 (257)
T 1g6h_A 161 LVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLEL 199 (257)
T ss_dssp HHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999765
No 14
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=3.5e-38 Score=296.68 Aligned_cols=162 Identities=23% Similarity=0.335 Sum_probs=139.1
Q ss_pred CCeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc------eEEEEecc
Q psy208 274 PPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN------LKFGYFSQ 347 (443)
Q Consensus 274 ~~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------~~ig~~~Q 347 (443)
..+|+++||+++|+ + ++|+|+||+|++|++++|+||||||||||+|+|+|+++|++|+|.+.+. ..++|++|
T Consensus 8 ~~~l~~~~ls~~y~-~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i~~v~q 85 (214)
T 1sgw_A 8 GSKLEIRDLSVGYD-K-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPE 85 (214)
T ss_dssp -CEEEEEEEEEESS-S-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECS
T ss_pred CceEEEEEEEEEeC-C-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcEEEEeC
Confidence 35799999999996 4 8999999999999999999999999999999999999999999998653 35999999
Q ss_pred CcccccccchhHHHHHHH---hCC-CCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCC
Q psy208 348 HHVDQLDMNLRCVQLLEA---AFP-GKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPT 423 (443)
Q Consensus 348 ~~~~~l~~~~~~~~~~~~---~~~-~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPT 423 (443)
++. +....++.+++.. ... ....+.+..+++.+|+.. . ++++.+|||||||||+||+||+.+|++|||||||
T Consensus 86 ~~~--~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gl~~-~-~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPt 161 (214)
T 1sgw_A 86 EII--VPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLD-L-KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPV 161 (214)
T ss_dssp SCC--CCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCC-T-TSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTT
T ss_pred CCc--CCCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHcCCCc-C-CCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCC
Confidence 863 3445566666532 111 223567888999999974 4 8899999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHccc
Q psy208 424 NHLDIETIEALGKAINKY 441 (443)
Q Consensus 424 n~LD~~s~~~l~~~L~~~ 441 (443)
++||+.+++.+.+.|.++
T Consensus 162 s~LD~~~~~~l~~~l~~~ 179 (214)
T 1sgw_A 162 VAIDEDSKHKVLKSILEI 179 (214)
T ss_dssp TTSCTTTHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHH
Confidence 999999999999998765
No 15
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=3.8e-38 Score=301.66 Aligned_cols=164 Identities=22% Similarity=0.335 Sum_probs=138.6
Q ss_pred CCeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc------------eE
Q psy208 274 PPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN------------LK 341 (443)
Q Consensus 274 ~~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------------~~ 341 (443)
.++|+++||+++|+ ++++|+|+||+|++|++++|+||||||||||+|+|+|+++|++|+|.+.+. ..
T Consensus 4 ~~~l~~~~l~~~y~-~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 82 (240)
T 1ji0_A 4 DIVLEVQSLHVYYG-AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMG 82 (240)
T ss_dssp SEEEEEEEEEEEET-TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTT
T ss_pred CceEEEEeEEEEEC-CeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCC
Confidence 35799999999996 468999999999999999999999999999999999999999999988641 13
Q ss_pred EEEeccCcccccccchhHHHHHHHhC-CC--CC--HHHHHHHHhcCC-CChhhhhccCCCCCHHHHHHHHHHHHhccCCC
Q psy208 342 FGYFSQHHVDQLDMNLRCVQLLEAAF-PG--KP--QEEYRRQLGGFG-VSGDLALQFVGSLSGGQKSRVAFARMCMAAPN 415 (443)
Q Consensus 342 ig~~~Q~~~~~l~~~~~~~~~~~~~~-~~--~~--~~~~~~~L~~~g-l~~~~~~~~~~~LSgGekqRl~lA~al~~~p~ 415 (443)
+||++|++ .+....++.+++.... .. .. .+.+..+++.++ +. +..++++.+|||||||||+|||||+.+|+
T Consensus 83 i~~v~q~~--~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~-~~~~~~~~~LSgGq~qrv~lAraL~~~p~ 159 (240)
T 1ji0_A 83 IALVPEGR--RIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLK-ERLKQLGGTLSGGEQQMLAIGRALMSRPK 159 (240)
T ss_dssp EEEECSSC--CCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHH-TTTTSBSSSSCHHHHHHHHHHHHHTTCCS
T ss_pred EEEEecCC--ccCCCCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHcccHh-hHhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 99999986 3445567777775421 11 11 235667888884 74 56788999999999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 416 FLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 416 lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
+|||||||++||+.+++.+.+.|.++
T Consensus 160 lllLDEPts~LD~~~~~~l~~~l~~~ 185 (240)
T 1ji0_A 160 LLMMDEPSLGLAPILVSEVFEVIQKI 185 (240)
T ss_dssp EEEEECTTTTCCHHHHHHHHHHHHHH
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999765
No 16
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=4.2e-38 Score=316.89 Aligned_cols=166 Identities=27% Similarity=0.381 Sum_probs=140.9
Q ss_pred CCCeEEEeeeEEEeCCC---CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc----------
Q psy208 273 SPPILQLSEVNFEYVPG---KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN---------- 339 (443)
Q Consensus 273 ~~~~l~~~~l~~~y~~~---~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~---------- 339 (443)
.+++|+++||+++|+++ .++|+||||+|++|+++||+||||||||||+|+|+|+++|++|+|.+.+.
T Consensus 21 ~~~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~ 100 (366)
T 3tui_C 21 DKHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESEL 100 (366)
T ss_dssp --CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHH
T ss_pred CCceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHH
Confidence 45689999999999632 36999999999999999999999999999999999999999999988642
Q ss_pred ----eEEEEeccCcccccccchhHHHHHHHh--CCCCC----HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHH
Q psy208 340 ----LKFGYFSQHHVDQLDMNLRCVQLLEAA--FPGKP----QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARM 409 (443)
Q Consensus 340 ----~~ig~~~Q~~~~~l~~~~~~~~~~~~~--~~~~~----~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~a 409 (443)
..+||++|++ .+.+..++.+++... ..... .+.+.++|+.+|+. +..++++.+|||||||||+||||
T Consensus 101 ~~~r~~Ig~v~Q~~--~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~-~~~~~~~~~LSGGqkQRVaIArA 177 (366)
T 3tui_C 101 TKARRQIGMIFQHF--NLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLG-DKHDSYPSNLSGGQKQRVAIARA 177 (366)
T ss_dssp HHHHTTEEEECSSC--CCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCG-GGTTCCTTTSCHHHHHHHHHHHH
T ss_pred HHHhCcEEEEeCCC--ccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc-hHhcCChhhCCHHHHHHHHHHHH
Confidence 2599999986 355666777776431 11222 23577889999996 57899999999999999999999
Q ss_pred hccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 410 CMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 410 l~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
|+.+|++|||||||++||+.++..+.+.|+++
T Consensus 178 L~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l 209 (366)
T 3tui_C 178 LASNPKVLLCDQATSALDPATTRSILELLKDI 209 (366)
T ss_dssp TTTCCSEEEEESTTTTSCHHHHHHHHHHHHHH
T ss_pred HhcCCCEEEEECCCccCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999765
No 17
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=7.5e-38 Score=301.86 Aligned_cols=161 Identities=22% Similarity=0.367 Sum_probs=138.1
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCceEEEEeccCccccccc
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDM 355 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ig~~~Q~~~~~l~~ 355 (443)
+|+++||+++|++++++|+|+||+|++|++++|+||||||||||+|+|+|+++|++|+|.+. ..+||++|++. +..
T Consensus 4 ~l~i~~l~~~y~~~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~--~~i~~v~q~~~--~~~ 79 (253)
T 2nq2_C 4 ALSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVY--QSIGFVPQFFS--SPF 79 (253)
T ss_dssp EEEEEEEEEEETTTTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEEC--SCEEEECSCCC--CSS
T ss_pred eEEEeeEEEEeCCCCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEe--ccEEEEcCCCc--cCC
Confidence 79999999999524689999999999999999999999999999999999999999999853 36999999863 334
Q ss_pred chhHHHHHHHhC----C---CCC---HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCC
Q psy208 356 NLRCVQLLEAAF----P---GKP---QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNH 425 (443)
Q Consensus 356 ~~~~~~~~~~~~----~---~~~---~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~ 425 (443)
..++.+++.... . ... .+.+..++..+|+. +..++++.+|||||||||+|||||+.+|++|||||||++
T Consensus 80 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~ 158 (253)
T 2nq2_C 80 AYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLT-HLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSA 158 (253)
T ss_dssp CCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCG-GGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTT
T ss_pred CCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCCh-HHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccc
Confidence 557777765321 0 011 24577889999996 567899999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHccc
Q psy208 426 LDIETIEALGKAINKY 441 (443)
Q Consensus 426 LD~~s~~~l~~~L~~~ 441 (443)
||+.+++.+.+.|.++
T Consensus 159 LD~~~~~~l~~~l~~l 174 (253)
T 2nq2_C 159 LDLANQDIVLSLLIDL 174 (253)
T ss_dssp SCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999999765
No 18
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=1.5e-37 Score=301.85 Aligned_cols=164 Identities=24% Similarity=0.401 Sum_probs=141.3
Q ss_pred CCeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-----------eEE
Q psy208 274 PPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-----------LKF 342 (443)
Q Consensus 274 ~~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~i 342 (443)
.++|+++||+++|+ ++++|+|+||+|++|+++||+||||||||||+|+|+|+++|++|+|.+.+. ..+
T Consensus 9 ~~~l~~~~l~~~~~-~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i 87 (266)
T 4g1u_C 9 VALLEASHLHYHVQ-QQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTR 87 (266)
T ss_dssp CCEEEEEEEEEEET-TEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHE
T ss_pred cceEEEEeEEEEeC-CeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheE
Confidence 35899999999995 578999999999999999999999999999999999999999999998642 248
Q ss_pred EEeccCcccccccchhHHHHHHHhC---C-CCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhcc------
Q psy208 343 GYFSQHHVDQLDMNLRCVQLLEAAF---P-GKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMA------ 412 (443)
Q Consensus 343 g~~~Q~~~~~l~~~~~~~~~~~~~~---~-~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~------ 412 (443)
+|++|++. +....++.+++.... . ....+.+.++++.+++. +..++++.+|||||||||+|||||+.
T Consensus 88 ~~v~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~ 164 (266)
T 4g1u_C 88 AVMRQYSE--LAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCL-ALAQRDYRVLSGGEQQRVQLARVLAQLWQPQP 164 (266)
T ss_dssp EEECSCCC--CCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCS-TTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSC
T ss_pred EEEecCCc--cCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCCh-hHhcCCcccCCHHHHHHHHHHHHHhcccccCC
Confidence 99999863 334567777775321 1 12245678899999996 57789999999999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 413 APNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 413 ~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
+|++|||||||++||+.++..+.+.|+++
T Consensus 165 ~p~lLllDEPts~LD~~~~~~i~~~l~~l 193 (266)
T 4g1u_C 165 TPRWLFLDEPTSALDLYHQQHTLRLLRQL 193 (266)
T ss_dssp CCEEEEECCCCSSCCHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999998765
No 19
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=1.9e-37 Score=301.17 Aligned_cols=165 Identities=29% Similarity=0.402 Sum_probs=140.4
Q ss_pred eEEEeeeEEEeC-CC---CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc--------eEEE
Q psy208 276 ILQLSEVNFEYV-PG---KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN--------LKFG 343 (443)
Q Consensus 276 ~l~~~~l~~~y~-~~---~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~--------~~ig 343 (443)
+|+++||+++|+ ++ +++|+|+||+|++|++++|+||||||||||+|+|+|+++|++|+|.+.+. ..+|
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~i~ 81 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIG 81 (266)
T ss_dssp CEEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHHHHGGGEE
T ss_pred EEEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchHHhhhhEE
Confidence 589999999996 23 57999999999999999999999999999999999999999999998652 2599
Q ss_pred EeccCcccccccchhHHHHHHHhC----C-CCCHHHHHHHHhcCCCCh-hhhhccCCCCCHHHHHHHHHHHHhccCCCeE
Q psy208 344 YFSQHHVDQLDMNLRCVQLLEAAF----P-GKPQEEYRRQLGGFGVSG-DLALQFVGSLSGGQKSRVAFARMCMAAPNFL 417 (443)
Q Consensus 344 ~~~Q~~~~~l~~~~~~~~~~~~~~----~-~~~~~~~~~~L~~~gl~~-~~~~~~~~~LSgGekqRl~lA~al~~~p~lL 417 (443)
|++|++...+ ...++.+++.... + ....+.+..++..+|+.. +..++++.+|||||||||+|||||+.+|++|
T Consensus 82 ~v~q~~~~~~-~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~ll 160 (266)
T 2yz2_A 82 IAFQYPEDQF-FAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDIL 160 (266)
T ss_dssp EECSSGGGGC-CCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCSEE
T ss_pred EEeccchhhc-CCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 9999853222 3467777775421 1 123456888999999962 5678999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHccc
Q psy208 418 VLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 418 iLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
||||||++||+.++..+.+.|.++
T Consensus 161 lLDEPts~LD~~~~~~l~~~l~~l 184 (266)
T 2yz2_A 161 ILDEPLVGLDREGKTDLLRIVEKW 184 (266)
T ss_dssp EEESTTTTCCHHHHHHHHHHHHHH
T ss_pred EEcCccccCCHHHHHHHHHHHHHH
Confidence 999999999999999999999765
No 20
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=1.4e-37 Score=300.28 Aligned_cols=164 Identities=25% Similarity=0.350 Sum_probs=139.1
Q ss_pred CCeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc----------eEEE
Q psy208 274 PPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN----------LKFG 343 (443)
Q Consensus 274 ~~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~----------~~ig 343 (443)
.++|+++||+++|+ ++++|+++||+|.+|++++|+||||||||||+|+|+|+++|++|+|.+.+. ..+|
T Consensus 13 ~~~l~i~~l~~~y~-~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~i~ 91 (256)
T 1vpl_A 13 MGAVVVKDLRKRIG-KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLIS 91 (256)
T ss_dssp -CCEEEEEEEEEET-TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEE
T ss_pred CCeEEEEEEEEEEC-CEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHHhhcEE
Confidence 46899999999995 578999999999999999999999999999999999999999999988642 2499
Q ss_pred EeccCcccccccchhHHHHHHHh--CCCCC----HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeE
Q psy208 344 YFSQHHVDQLDMNLRCVQLLEAA--FPGKP----QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFL 417 (443)
Q Consensus 344 ~~~Q~~~~~l~~~~~~~~~~~~~--~~~~~----~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lL 417 (443)
|++|++. +....++.+++... ..... .+.+.+++..+|+. +..++++.+|||||||||+||+||+.+|++|
T Consensus 92 ~v~q~~~--l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~-~~~~~~~~~LSgGq~qRv~lAraL~~~p~ll 168 (256)
T 1vpl_A 92 YLPEEAG--AYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLG-EKIKDRVSTYSKGMVRKLLIARALMVNPRLA 168 (256)
T ss_dssp EECTTCC--CCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCG-GGGGSBGGGCCHHHHHHHHHHHHHTTCCSEE
T ss_pred EEcCCCC--CCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCc-hHhcCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 9999863 34455666665321 11112 23567889999986 5678999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHccc
Q psy208 418 VLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 418 iLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
||||||++||+.++..+.+.|.++
T Consensus 169 lLDEPts~LD~~~~~~l~~~l~~l 192 (256)
T 1vpl_A 169 ILDEPTSGLDVLNAREVRKILKQA 192 (256)
T ss_dssp EEESTTTTCCHHHHHHHHHHHHHH
T ss_pred EEeCCccccCHHHHHHHHHHHHHH
Confidence 999999999999999999999765
No 21
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=2e-37 Score=311.67 Aligned_cols=161 Identities=26% Similarity=0.440 Sum_probs=140.0
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-------------eEE
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-------------LKF 342 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-------------~~i 342 (443)
+|+++||+++|+ +.++|+|+||+|.+|++++|+||||||||||||+|+|+++|++|+|.+.+. ..+
T Consensus 4 ~l~i~~ls~~y~-~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~i 82 (359)
T 3fvq_A 4 ALHIGHLSKSFQ-NTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRL 82 (359)
T ss_dssp CEEEEEEEEEET-TEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCC
T ss_pred EEEEEeEEEEEC-CEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCE
Confidence 699999999995 578999999999999999999999999999999999999999999987542 259
Q ss_pred EEeccCcccccccchhHHHHHHHhCC--CC----CHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCe
Q psy208 343 GYFSQHHVDQLDMNLRCVQLLEAAFP--GK----PQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNF 416 (443)
Q Consensus 343 g~~~Q~~~~~l~~~~~~~~~~~~~~~--~~----~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~l 416 (443)
||++|++ .+.+..++.+++..... .. ..+.+.++|+.+++. +..++++.+|||||||||+|||||+.+|++
T Consensus 83 g~vfQ~~--~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~-~~~~r~~~~LSGGq~QRValArAL~~~P~l 159 (359)
T 3fvq_A 83 GYLVQEG--VLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGIS-ELAGRYPHELSGGQQQRAALARALAPDPEL 159 (359)
T ss_dssp EEECTTC--CCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCG-GGTTSCGGGSCHHHHHHHHHHHHHTTCCSE
T ss_pred EEEeCCC--cCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCc-hHhcCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence 9999986 46667788888864221 11 134577889999996 678999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHcc
Q psy208 417 LVLDEPTNHLDIETIEALGKAINK 440 (443)
Q Consensus 417 LiLDEPTn~LD~~s~~~l~~~L~~ 440 (443)
|||||||++||+.++..+.+.|.+
T Consensus 160 LLLDEPts~LD~~~r~~l~~~l~~ 183 (359)
T 3fvq_A 160 ILLDEPFSALDEQLRRQIREDMIA 183 (359)
T ss_dssp EEEESTTTTSCHHHHHHHHHHHHH
T ss_pred EEEeCCcccCCHHHHHHHHHHHHH
Confidence 999999999999999999876654
No 22
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=2.5e-37 Score=310.89 Aligned_cols=167 Identities=25% Similarity=0.340 Sum_probs=142.2
Q ss_pred CCCCeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc---------eEE
Q psy208 272 LSPPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN---------LKF 342 (443)
Q Consensus 272 ~~~~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~---------~~i 342 (443)
.+..+|+++||+++|++++++|+|+||+|++|++++|+||||||||||||+|+|+++|++|+|.+.+. ..+
T Consensus 10 ~~~~~l~~~~l~~~y~g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~i 89 (355)
T 1z47_A 10 HGSMTIEFVGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNV 89 (355)
T ss_dssp -CCEEEEEEEEEECCTTSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSSE
T ss_pred CCCceEEEEEEEEEEcCCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChhhCcE
Confidence 35678999999999932467999999999999999999999999999999999999999999988642 359
Q ss_pred EEeccCcccccccchhHHHHHHHh--CCCCC----HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCe
Q psy208 343 GYFSQHHVDQLDMNLRCVQLLEAA--FPGKP----QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNF 416 (443)
Q Consensus 343 g~~~Q~~~~~l~~~~~~~~~~~~~--~~~~~----~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~l 416 (443)
||++|++ .+.+..++.+++... ..... .+.+.++++.+++. +..++++.+|||||||||+|||||+.+|++
T Consensus 90 g~v~Q~~--~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~-~~~~r~~~~LSGGq~QRvalArAL~~~P~l 166 (355)
T 1z47_A 90 GLVFQNY--ALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLE-SYANRFPHELSGGQQQRVALARALAPRPQV 166 (355)
T ss_dssp EEECGGG--CCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCG-GGTTSCGGGSCHHHHHHHHHHHHHTTCCSE
T ss_pred EEEecCc--ccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh-hHhcCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 9999985 355667777776431 11222 34577899999995 578899999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 417 LVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 417 LiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
|||||||++||+.+++.+.+.|+++
T Consensus 167 LLLDEP~s~LD~~~r~~l~~~l~~l 191 (355)
T 1z47_A 167 LLFDEPFAAIDTQIRRELRTFVRQV 191 (355)
T ss_dssp EEEESTTCCSSHHHHHHHHHHHHHH
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHH
Confidence 9999999999999999999998764
No 23
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=5.5e-37 Score=294.79 Aligned_cols=162 Identities=29% Similarity=0.406 Sum_probs=134.9
Q ss_pred eEEEeeeEEEeC-CCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-----------eEEE
Q psy208 276 ILQLSEVNFEYV-PGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-----------LKFG 343 (443)
Q Consensus 276 ~l~~~~l~~~y~-~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~ig 343 (443)
-++++||+++|+ +++++|+++||+|++|++++|+||||||||||+|+|+|+++|++|+|.+.+. ..+|
T Consensus 7 ~~~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i~ 86 (247)
T 2ff7_A 7 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVG 86 (247)
T ss_dssp EEEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEE
T ss_pred ceeEEEEEEEeCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcEE
Confidence 389999999993 3467999999999999999999999999999999999999999999988641 2499
Q ss_pred EeccCcccccccchhHHHHHHHhCCCCCHHHHHHHHhcCCCChhhhh-----------ccCCCCCHHHHHHHHHHHHhcc
Q psy208 344 YFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLAL-----------QFVGSLSGGQKSRVAFARMCMA 412 (443)
Q Consensus 344 ~~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~-----------~~~~~LSgGekqRl~lA~al~~ 412 (443)
|++|++. +.. .++.+++.........+.+...+..+++. +..+ +++.+|||||||||+|||||+.
T Consensus 87 ~v~Q~~~--l~~-~tv~enl~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~ 162 (247)
T 2ff7_A 87 VVLQDNV--LLN-RSIIDNISLANPGMSVEKVIYAAKLAGAH-DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVN 162 (247)
T ss_dssp EECSSCC--CTT-SBHHHHHTTTCTTCCHHHHHHHHHHHTCH-HHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTT
T ss_pred EEeCCCc--ccc-ccHHHHHhccCCCCCHHHHHHHHHHhChH-HHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhc
Confidence 9999863 222 48888875432233455667777777764 2333 4568999999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 413 APNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 413 ~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
+|++|||||||++||+.++..+.+.|.++
T Consensus 163 ~p~lllLDEPts~LD~~~~~~i~~~l~~~ 191 (247)
T 2ff7_A 163 NPKILIFDEATSALDYESEHVIMRNMHKI 191 (247)
T ss_dssp CCSEEEECCCCSCCCHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999765
No 24
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=4e-37 Score=298.24 Aligned_cols=161 Identities=22% Similarity=0.380 Sum_probs=138.4
Q ss_pred eEEEeeeEEEeCCC---CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc--------eEEE-
Q psy208 276 ILQLSEVNFEYVPG---KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN--------LKFG- 343 (443)
Q Consensus 276 ~l~~~~l~~~y~~~---~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~--------~~ig- 343 (443)
+|+++|++++|++. +++|+|+||+|+ |++++|+||||||||||+|+|+|++ |++|+|.+.+. ..++
T Consensus 1 ml~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~~~~~~i~~ 78 (263)
T 2pjz_A 1 MIQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKIRNYIRYST 78 (263)
T ss_dssp CEEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGCSCCTTEEE
T ss_pred CEEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcchHHhhheEE
Confidence 48999999999631 679999999999 9999999999999999999999999 99999998652 2589
Q ss_pred EeccCcccccccchhHHHHHHHh--CCCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeC
Q psy208 344 YFSQHHVDQLDMNLRCVQLLEAA--FPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDE 421 (443)
Q Consensus 344 ~~~Q~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDE 421 (443)
|++|++. + ..++.+++... ......+.+.+++..+++..+..++++.+|||||||||+|||||+.+|++|||||
T Consensus 79 ~v~Q~~~--l--~~tv~enl~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDE 154 (263)
T 2pjz_A 79 NLPEAYE--I--GVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDE 154 (263)
T ss_dssp CCGGGSC--T--TSBHHHHHHHHHHHTCCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEEC
T ss_pred EeCCCCc--c--CCcHHHHHHHhhhhcchHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 9999863 2 55666665421 1134566788999999996356789999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHcccc
Q psy208 422 PTNHLDIETIEALGKAINKYT 442 (443)
Q Consensus 422 PTn~LD~~s~~~l~~~L~~~~ 442 (443)
||++||+.+++.+.+.|.++.
T Consensus 155 Pts~LD~~~~~~l~~~L~~~~ 175 (263)
T 2pjz_A 155 PFENVDAARRHVISRYIKEYG 175 (263)
T ss_dssp TTTTCCHHHHHHHHHHHHHSC
T ss_pred CccccCHHHHHHHHHHHHHhc
Confidence 999999999999999998764
No 25
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=3.7e-37 Score=311.73 Aligned_cols=162 Identities=25% Similarity=0.344 Sum_probs=140.9
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc---------eEEEEec
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN---------LKFGYFS 346 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~---------~~ig~~~ 346 (443)
+|+++||+++|+ +..+|+|+||+|++|++++|+||||||||||||+|+|+++|++|+|.+++. ..+||++
T Consensus 3 ~l~~~~l~~~yg-~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig~Vf 81 (381)
T 3rlf_A 3 SVQLQNVTKAWG-EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVF 81 (381)
T ss_dssp CEEEEEEEEEET-TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCEEEEC
T ss_pred EEEEEeEEEEEC-CEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHHCCEEEEe
Confidence 589999999995 578999999999999999999999999999999999999999999998642 3599999
Q ss_pred cCcccccccchhHHHHHHHh--CCCCC----HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEe
Q psy208 347 QHHVDQLDMNLRCVQLLEAA--FPGKP----QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLD 420 (443)
Q Consensus 347 Q~~~~~l~~~~~~~~~~~~~--~~~~~----~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLD 420 (443)
|++ .+.+..++.+++... ..... .+.+.++++.+++. +..++++.+|||||||||+|||||+.+|++||||
T Consensus 82 Q~~--~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLD 158 (381)
T 3rlf_A 82 QSY--ALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLA-HLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLD 158 (381)
T ss_dssp TTC--CCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCG-GGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEE
T ss_pred cCC--cCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-hhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 986 456677887776421 11222 34577899999996 6789999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHccc
Q psy208 421 EPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 421 EPTn~LD~~s~~~l~~~L~~~ 441 (443)
|||++||+..+..+.+.|+++
T Consensus 159 EPts~LD~~~~~~l~~~l~~l 179 (381)
T 3rlf_A 159 EPLSNLDAALRVQMRIEISRL 179 (381)
T ss_dssp STTTTSCHHHHHHHHHHHHHH
T ss_pred CCCcCCCHHHHHHHHHHHHHH
Confidence 999999999999999998765
No 26
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=5.9e-37 Score=293.32 Aligned_cols=159 Identities=24% Similarity=0.359 Sum_probs=136.2
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc---------eEEEEec
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN---------LKFGYFS 346 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~---------~~ig~~~ 346 (443)
+|+++||+++|+ + +|+|+||+|++ ++++|+||||||||||+|+|+|+++|++|+|.+.+. ..+||++
T Consensus 1 ml~~~~l~~~y~-~--~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~i~~v~ 76 (240)
T 2onk_A 1 MFLKVRAEKRLG-N--FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVP 76 (240)
T ss_dssp CCEEEEEEEEET-T--EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCC
T ss_pred CEEEEEEEEEeC-C--EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCchhhCcEEEEc
Confidence 478999999995 3 59999999999 999999999999999999999999999999988642 2589999
Q ss_pred cCcccccccchhHHHHHHHhCCCC----CHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCC
Q psy208 347 QHHVDQLDMNLRCVQLLEAAFPGK----PQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEP 422 (443)
Q Consensus 347 Q~~~~~l~~~~~~~~~~~~~~~~~----~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEP 422 (443)
|++. +....++.+++....... ..+.+.++++.+|+. +..++++.+|||||||||+|||||+.+|++||||||
T Consensus 77 q~~~--l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEP 153 (240)
T 2onk_A 77 QDYA--LFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIA-HLLDRKPARLSGGERQRVALARALVIQPRLLLLDEP 153 (240)
T ss_dssp SSCC--CCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCT-TTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEEST
T ss_pred CCCc--cCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCH-HHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 9863 455667777775322111 134577899999996 567899999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHccc
Q psy208 423 TNHLDIETIEALGKAINKY 441 (443)
Q Consensus 423 Tn~LD~~s~~~l~~~L~~~ 441 (443)
|++||+.+++.+.+.|.++
T Consensus 154 ts~LD~~~~~~~~~~l~~l 172 (240)
T 2onk_A 154 LSAVDLKTKGVLMEELRFV 172 (240)
T ss_dssp TSSCCHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHH
Confidence 9999999999999998765
No 27
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=1.2e-36 Score=306.47 Aligned_cols=162 Identities=22% Similarity=0.297 Sum_probs=141.1
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc---------eEEEEec
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN---------LKFGYFS 346 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~---------~~ig~~~ 346 (443)
+|+++||+++|+ ++++|+|+||+|++|++++|+||||||||||||+|+|+++|++|+|.+++. ..+||++
T Consensus 3 ~l~~~~l~~~y~-~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~ 81 (359)
T 2yyz_A 3 SIRVVNLKKYFG-KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMVF 81 (359)
T ss_dssp CEEEEEEEEEET-TEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEEC
T ss_pred EEEEEEEEEEEC-CEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChhhCcEEEEe
Confidence 589999999995 567999999999999999999999999999999999999999999988642 2599999
Q ss_pred cCcccccccchhHHHHHHHhCC--CCC----HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEe
Q psy208 347 QHHVDQLDMNLRCVQLLEAAFP--GKP----QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLD 420 (443)
Q Consensus 347 Q~~~~~l~~~~~~~~~~~~~~~--~~~----~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLD 420 (443)
|++ .+.+..++.+++..... ... .+.+.++++.+++. +..++++.+|||||||||+|||||+.+|++||||
T Consensus 82 Q~~--~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLD 158 (359)
T 2yyz_A 82 QNY--ALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLID-NLLDRKPTQLSGGQQQRVALARALVKQPKVLLFD 158 (359)
T ss_dssp SSC--CCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCG-GGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred cCc--ccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc-hHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 986 35567788888764321 111 24578899999995 5788999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHccc
Q psy208 421 EPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 421 EPTn~LD~~s~~~l~~~L~~~ 441 (443)
|||++||+.+++.+.+.|+++
T Consensus 159 EP~s~LD~~~r~~l~~~l~~l 179 (359)
T 2yyz_A 159 EPLSNLDANLRMIMRAEIKHL 179 (359)
T ss_dssp STTTTSCHHHHHHHHHHHHHH
T ss_pred CCcccCCHHHHHHHHHHHHHH
Confidence 999999999999999998765
No 28
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=6.6e-37 Score=297.52 Aligned_cols=166 Identities=23% Similarity=0.310 Sum_probs=134.9
Q ss_pred CCeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcC--CCCCCceEEEcCc------------
Q psy208 274 PPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGI--ISPTAGTRTVHRN------------ 339 (443)
Q Consensus 274 ~~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~--~~p~~G~i~~~~~------------ 339 (443)
.++|+++||+++|+ ++++|+|+||+|++|++++|+||||||||||+|+|+|+ ++|++|+|.+.+.
T Consensus 18 ~~~l~~~~l~~~y~-~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~ 96 (267)
T 2zu0_C 18 SHMLSIKDLHVSVE-DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAG 96 (267)
T ss_dssp --CEEEEEEEEEET-TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHH
T ss_pred CceEEEEeEEEEEC-CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhh
Confidence 45799999999995 57899999999999999999999999999999999999 4689999988642
Q ss_pred eEEEEeccCcccccccchhHHHHHHH---------hCCCCC----HHHHHHHHhcCCCChhhhhccCC-CCCHHHHHHHH
Q psy208 340 LKFGYFSQHHVDQLDMNLRCVQLLEA---------AFPGKP----QEEYRRQLGGFGVSGDLALQFVG-SLSGGQKSRVA 405 (443)
Q Consensus 340 ~~ig~~~Q~~~~~l~~~~~~~~~~~~---------~~~~~~----~~~~~~~L~~~gl~~~~~~~~~~-~LSgGekqRl~ 405 (443)
..++|++|++. +....++.+++.. ...... .+.+.++++.+|+.....++++. +|||||||||+
T Consensus 97 ~~i~~v~Q~~~--l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~ 174 (267)
T 2zu0_C 97 EGIFMAFQYPV--EIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRND 174 (267)
T ss_dssp HTEEEECSSCC--CCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHH
T ss_pred CCEEEEccCcc--ccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHH
Confidence 13899999863 2334444443321 111112 23567889999996456778887 59999999999
Q ss_pred HHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHcccc
Q psy208 406 FARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKYT 442 (443)
Q Consensus 406 lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~~ 442 (443)
|||||+.+|++|||||||++||+.+++.+.+.|.++.
T Consensus 175 iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~ 211 (267)
T 2zu0_C 175 ILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLR 211 (267)
T ss_dssp HHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTC
T ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998763
No 29
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=1.5e-36 Score=304.93 Aligned_cols=161 Identities=25% Similarity=0.341 Sum_probs=139.2
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc---------eEEEEec
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN---------LKFGYFS 346 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~---------~~ig~~~ 346 (443)
||+++||+++|+ ++ +|+|+||+|++|++++|+||||||||||||+|+|+++|++|+|.+++. ..+||++
T Consensus 1 ml~~~~l~~~y~-~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~ 78 (348)
T 3d31_A 1 MIEIESLSRKWK-NF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVY 78 (348)
T ss_dssp CEEEEEEEEECS-SC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEEC
T ss_pred CEEEEEEEEEEC-CE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEEEEe
Confidence 489999999996 46 999999999999999999999999999999999999999999998652 2489999
Q ss_pred cCcccccccchhHHHHHHHh---CCCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCC
Q psy208 347 QHHVDQLDMNLRCVQLLEAA---FPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPT 423 (443)
Q Consensus 347 Q~~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPT 423 (443)
|++ .+.+..++.+++... ......+.+.++++.+++. +..++++.+|||||||||+|||||+.+|++|||||||
T Consensus 79 Q~~--~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~ 155 (348)
T 3d31_A 79 QNY--SLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIE-HLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPL 155 (348)
T ss_dssp TTC--CCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCT-TTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSS
T ss_pred cCc--ccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCc-hHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECcc
Confidence 986 355566777776431 1111236788899999996 5788999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHccc
Q psy208 424 NHLDIETIEALGKAINKY 441 (443)
Q Consensus 424 n~LD~~s~~~l~~~L~~~ 441 (443)
++||+.+++.+.+.|+++
T Consensus 156 s~LD~~~~~~l~~~l~~l 173 (348)
T 3d31_A 156 SALDPRTQENAREMLSVL 173 (348)
T ss_dssp TTSCHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHH
Confidence 999999999999998765
No 30
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=100.00 E-value=3.1e-36 Score=331.56 Aligned_cols=270 Identities=20% Similarity=0.184 Sum_probs=182.8
Q ss_pred CCHHHHHHHHHHhCCCChhhhhccCCCCChHHHH----------------------------HHHHHHHH---HhhhCCC
Q psy208 113 DKAPARASVILAGLGFTPEMQKRATKHFSGGWRK----------------------------MAIIWLEN---YLQNWPT 161 (443)
Q Consensus 113 ~~~~~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~----------------------------~~i~wL~~---~L~~~~~ 161 (443)
+++..|++ .|..+|++...+++++.+|||||+| ..+.||.+ .|+++++
T Consensus 354 ~ei~~rl~-~L~~vGL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~G~ 432 (842)
T 2vf7_A 354 ADLVKRLD-VLLHLGLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGN 432 (842)
T ss_dssp HHHHHHHH-HHHHTTCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHH-HHHhCCCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHcCC
Confidence 45678888 6889999865578999999999999 35555555 5677899
Q ss_pred eEEEEecCHHHHhccCCcEEEE------eCCeeEEEcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy208 162 TLLVVSHDRHFLDSVPTDIFHL------HSQRIDTYRGNYEAFDKIKTEKLKNQQREIEAQRMHREHVQKFIDTFRYNAN 235 (443)
Q Consensus 162 tviiVSHDr~fLd~v~~~i~~l------~~g~i~~~~G~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 235 (443)
|||+||||+++++ .||+|++| ++|++ +|.|+|+++.+.++... ..++.
T Consensus 433 TVIvVeHdl~~l~-~aD~ii~lgpgaG~~~G~i-v~~g~~~~~~~~~~~~~-----------------~~~l~------- 486 (842)
T 2vf7_A 433 SLFVVEHDLDVIR-RADWLVDVGPEAGEKGGEI-LYSGPPEGLKHVPESQT-----------------GQYLF------- 486 (842)
T ss_dssp EEEEECCCHHHHT-TCSEEEEECSSSGGGCCSE-EEEECGGGGGGCTTCHH-----------------HHHHH-------
T ss_pred EEEEEcCCHHHHH-hCCEEEEeCCCcccCCCEE-EEecCHHHHHhchHHHH-----------------HHHhh-------
Confidence 9999999999986 69999999 45555 58899998854311000 00000
Q ss_pred HHHHHHHHHHHHhcCCCCCCCccccccccccCCCCCCCCCeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCc
Q psy208 236 RASSVQSKIKQLERLPELKPIEKEVEVVLKFPDTELLSPPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAG 315 (443)
Q Consensus 236 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsG 315 (443)
.+. .. ++ . .+..+.++|+++|+++ ..|+||||+|++|+++||+|+||||
T Consensus 487 ------------~~~-~~-~~---~--------~~~~~~~~L~v~~l~~------~~L~~vsl~i~~Geiv~I~G~nGSG 535 (842)
T 2vf7_A 487 ------------ADR-HT-EP---H--------TPREPAGWLELNGVTR------NNLDNLDVRFPLGVMTSVTGVSGSG 535 (842)
T ss_dssp ------------TCC-CC-CC---C--------CCCCCSCEEEEEEEEE------TTEEEEEEEEESSSEEEEECCTTSS
T ss_pred ------------hcc-cc-cc---c--------ccCCCCceEEEEeeee------cccccceEEEcCCCEEEEEcCCCcC
Confidence 000 00 00 0 0112346899999985 1699999999999999999999999
Q ss_pred HHHHHHH-HHcCC-------CCCCceEE-------------Ec---CceEEEEeccCccccccc----------------
Q psy208 316 KTTLLKI-IMGII-------SPTAGTRT-------------VH---RNLKFGYFSQHHVDQLDM---------------- 355 (443)
Q Consensus 316 KSTLlk~-l~G~~-------~p~~G~i~-------------~~---~~~~ig~~~Q~~~~~l~~---------------- 355 (443)
||||+++ |+|++ +|+.|.+. .+ .-.++.++.|.+......
T Consensus 536 KSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~i~vdq~~i~~~~rs~~at~~~~~~~ir~~ 615 (842)
T 2vf7_A 536 KSTLVSQALVDALAAHFGQPVNPDPEDDEDPADHTAGSARLGGDLAQITRLVRVDQKPIGRTPRSNMATYTGLFDQVRKL 615 (842)
T ss_dssp HHHHCCCCCHHHHHHHTTC-----------------CCCEEEESGGGCCEEEEECSSCSCSSTTCCHHHHSSTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCccccccccccccccccccccCcccccceEEEECCeeCCCCccccchhhhhHHHHHHHH
Confidence 9999996 77543 45455431 11 011233555543210000
Q ss_pred -------------------------------------------------------------------ch--------hHH
Q psy208 356 -------------------------------------------------------------------NL--------RCV 360 (443)
Q Consensus 356 -------------------------------------------------------------------~~--------~~~ 360 (443)
.. ++.
T Consensus 616 fa~~~~~r~~g~~~~~fs~n~~~g~c~~c~g~G~~~~~~~f~~~v~~~c~~c~G~r~~~e~l~v~~~~~si~e~l~ltv~ 695 (842)
T 2vf7_A 616 FAATPLAKKRGYNAGRFSFNVKGGRCEHCQGEGWVMVELLFLPSVYAPCPVCHGTRYNAETLEVEYRGKNIADVLALTVD 695 (842)
T ss_dssp HHTSHHHHHTTCCGGGGCSSSTTTBCTTTTTCSEEEETTCSSSCEEEECTTTTTCCBCTTGGGCCBTTBCHHHHHTCBHH
T ss_pred HhcChHHHhcCCccccccccccccccccccCCCccchhhhcCCccceecccccCcccchhhHhhhhcCCCHHHHHhccHH
Confidence 00 111
Q ss_pred HHHHHhCCCC-CHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccC---CCeEEEeCCCCCCCHHHHHHHHH
Q psy208 361 QLLEAAFPGK-PQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAA---PNFLVLDEPTNHLDIETIEALGK 436 (443)
Q Consensus 361 ~~~~~~~~~~-~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~---p~lLiLDEPTn~LD~~s~~~l~~ 436 (443)
+.+. .+... ....+.++|..+|+.....++++.+|||||||||+||++|+.+ |+||||||||+|||+.+++.|.+
T Consensus 696 e~l~-~~~~~~~~~~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~ 774 (842)
T 2vf7_A 696 EAHD-FFADESAIFRALDTLREVGLGYLRLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQR 774 (842)
T ss_dssp HHHH-HTTTSHHHHHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHH
T ss_pred HHHH-HhhcchHHHHHHHHHHHcCCCcccccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHH
Confidence 1111 11111 1234577899999975456899999999999999999999996 79999999999999999999999
Q ss_pred HHccc
Q psy208 437 AINKY 441 (443)
Q Consensus 437 ~L~~~ 441 (443)
.|.++
T Consensus 775 lL~~L 779 (842)
T 2vf7_A 775 QLVKL 779 (842)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98764
No 31
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=1.7e-36 Score=305.37 Aligned_cols=162 Identities=26% Similarity=0.369 Sum_probs=140.5
Q ss_pred eEEEeeeEEEeCCCCc--eeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc--------------
Q psy208 276 ILQLSEVNFEYVPGKP--ILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-------------- 339 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~--il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-------------- 339 (443)
+|+++||+++|+ +++ +|+|+||+|++|++++|+||||||||||||+|+|+++|++|+|.+++.
T Consensus 3 ~l~i~~l~~~y~-~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~ 81 (353)
T 1oxx_K 3 RIIVKNVSKVFK-KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPED 81 (353)
T ss_dssp CEEEEEEEEEEG-GGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGG
T ss_pred EEEEEeEEEEEC-CEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhh
Confidence 589999999995 467 999999999999999999999999999999999999999999987531
Q ss_pred eEEEEeccCcccccccchhHHHHHHHhCC--CCC----HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccC
Q psy208 340 LKFGYFSQHHVDQLDMNLRCVQLLEAAFP--GKP----QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAA 413 (443)
Q Consensus 340 ~~ig~~~Q~~~~~l~~~~~~~~~~~~~~~--~~~----~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~ 413 (443)
..+||++|++ .+.+..++.+++..... ... .+.+.++++.+++. +..++++.+|||||||||+|||||+.+
T Consensus 82 r~ig~v~Q~~--~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~~~~~~LSGGq~QRvalAraL~~~ 158 (353)
T 1oxx_K 82 RKIGMVFQTW--ALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIH-HVLNHFPRELSGAQQQRVALARALVKD 158 (353)
T ss_dssp SCEEEEETTS--CCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCG-GGTTSCGGGSCHHHHHHHHHHHHHTTC
T ss_pred CCEEEEeCCC--ccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-hHhcCChhhCCHHHHHHHHHHHHHHhC
Confidence 2599999986 35667788888764221 222 24577899999995 578899999999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 414 PNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 414 p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
|++|||||||++||+.++..+.+.|+++
T Consensus 159 P~lLLLDEP~s~LD~~~r~~l~~~l~~l 186 (353)
T 1oxx_K 159 PSLLLLDEPFSNLDARMRDSARALVKEV 186 (353)
T ss_dssp CSEEEEESTTTTSCGGGHHHHHHHHHHH
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999998764
No 32
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=1.6e-36 Score=295.39 Aligned_cols=163 Identities=23% Similarity=0.365 Sum_probs=134.1
Q ss_pred CeEEEeeeEEEeCC--CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-----------eE
Q psy208 275 PILQLSEVNFEYVP--GKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-----------LK 341 (443)
Q Consensus 275 ~~l~~~~l~~~y~~--~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~ 341 (443)
.+|+++||+++|++ .+++|+++||+|++|++++|+||||||||||+|+|+|+++|++|+|.+.+. ..
T Consensus 15 ~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 94 (271)
T 2ixe_A 15 GLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQ 94 (271)
T ss_dssp CCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHH
T ss_pred ceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhcc
Confidence 47999999999964 267999999999999999999999999999999999999999999998642 24
Q ss_pred EEEeccCcccccccchhHHHHHHHhCCCCCH-HH---------HHHHHhcC--CCChhhhhccCCCCCHHHHHHHHHHHH
Q psy208 342 FGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQ-EE---------YRRQLGGF--GVSGDLALQFVGSLSGGQKSRVAFARM 409 (443)
Q Consensus 342 ig~~~Q~~~~~l~~~~~~~~~~~~~~~~~~~-~~---------~~~~L~~~--gl~~~~~~~~~~~LSgGekqRl~lA~a 409 (443)
+||++|++. +.. .++.+++......... .. +..++..+ |+. ...++++.+|||||||||+||||
T Consensus 95 i~~v~Q~~~--l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~-~~~~~~~~~LSgGq~QRv~lAra 170 (271)
T 2ixe_A 95 VAAVGQEPL--LFG-RSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYD-TEVGETGNQLSGGQRQAVALARA 170 (271)
T ss_dssp EEEECSSCC--CCS-SBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGG-SBCCGGGTTSCHHHHHHHHHHHH
T ss_pred EEEEecCCc--ccc-ccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchh-hhhcCCcCCCCHHHHHHHHHHHH
Confidence 999999863 333 4888887643221111 11 23445555 453 34678899999999999999999
Q ss_pred hccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 410 CMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 410 l~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
|+.+|++|||||||++||+.++..+.+.|.++
T Consensus 171 L~~~p~lllLDEPts~LD~~~~~~i~~~l~~~ 202 (271)
T 2ixe_A 171 LIRKPRLLILDNATSALDAGNQLRVQRLLYES 202 (271)
T ss_dssp HTTCCSEEEEESTTTTCCHHHHHHHHHHHHHC
T ss_pred HhcCCCEEEEECCccCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999876
No 33
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=1.6e-36 Score=305.98 Aligned_cols=162 Identities=25% Similarity=0.369 Sum_probs=139.9
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc---------eEEEEec
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN---------LKFGYFS 346 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~---------~~ig~~~ 346 (443)
+|+++||+++|+ ++++|+|+||+|++|++++|+||||||||||||+|+|+++|++|+|.+++. ..+||++
T Consensus 3 ~l~~~~l~~~y~-~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~ 81 (362)
T 2it1_A 3 EIKLENIVKKFG-NFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLVF 81 (362)
T ss_dssp CEEEEEEEEESS-SSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEEC
T ss_pred EEEEEeEEEEEC-CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCcEEEEe
Confidence 589999999995 568999999999999999999999999999999999999999999988642 2599999
Q ss_pred cCcccccccchhHHHHHHHh--CCCCC----HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEe
Q psy208 347 QHHVDQLDMNLRCVQLLEAA--FPGKP----QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLD 420 (443)
Q Consensus 347 Q~~~~~l~~~~~~~~~~~~~--~~~~~----~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLD 420 (443)
|++. +.+..++.+++... ..... .+.+.++++.+++. +..++++.+|||||||||+|||||+.+|++||||
T Consensus 82 Q~~~--l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLD 158 (362)
T 2it1_A 82 QNWA--LYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHID-KLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLD 158 (362)
T ss_dssp TTCC--CCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCT-TCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred cCcc--cCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc-hHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 9863 55667777776431 11122 24577889999996 5788999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHccc
Q psy208 421 EPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 421 EPTn~LD~~s~~~l~~~L~~~ 441 (443)
|||++||+.++..+.+.|+++
T Consensus 159 EP~s~LD~~~r~~l~~~l~~l 179 (362)
T 2it1_A 159 EPLSNLDALLRLEVRAELKRL 179 (362)
T ss_dssp SGGGGSCHHHHHHHHHHHHHH
T ss_pred CccccCCHHHHHHHHHHHHHH
Confidence 999999999999999998765
No 34
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=4.8e-37 Score=295.76 Aligned_cols=163 Identities=23% Similarity=0.305 Sum_probs=131.7
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcC--CCCCCceEEEcCc------------eE
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGI--ISPTAGTRTVHRN------------LK 341 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~--~~p~~G~i~~~~~------------~~ 341 (443)
+|+++||+++|+ ++++|+|+||+|++|++++|+||||||||||+|+|+|+ ++|++|+|.+.+. ..
T Consensus 3 ~l~~~~l~~~y~-~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~ 81 (250)
T 2d2e_A 3 QLEIRDLWASID-GETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKG 81 (250)
T ss_dssp EEEEEEEEEEET-TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTT
T ss_pred eEEEEeEEEEEC-CEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCc
Confidence 699999999995 57899999999999999999999999999999999998 7899999988642 13
Q ss_pred EEEeccCcccccccchhHHHHHHHh----CC-CCC----HHHHHHHHhcCCCChhhhhccCCC-CCHHHHHHHHHHHHhc
Q psy208 342 FGYFSQHHVDQLDMNLRCVQLLEAA----FP-GKP----QEEYRRQLGGFGVSGDLALQFVGS-LSGGQKSRVAFARMCM 411 (443)
Q Consensus 342 ig~~~Q~~~~~l~~~~~~~~~~~~~----~~-~~~----~~~~~~~L~~~gl~~~~~~~~~~~-LSgGekqRl~lA~al~ 411 (443)
++|++|++. +....++.+++... .. ... ...+.+++..+|+..+..++++++ |||||||||+|||||+
T Consensus 82 i~~v~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~ 159 (250)
T 2d2e_A 82 LFLAFQYPV--EVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLV 159 (250)
T ss_dssp BCCCCCCCC---CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHHH
T ss_pred EEEeccCCc--cccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHH
Confidence 789999863 33444555554311 11 111 245678899999954667899999 9999999999999999
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 412 AAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 412 ~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
.+|++|||||||++||+.+++.+.+.|.++
T Consensus 160 ~~p~lllLDEPts~LD~~~~~~l~~~l~~l 189 (250)
T 2d2e_A 160 LEPTYAVLDETDSGLDIDALKVVARGVNAM 189 (250)
T ss_dssp HCCSEEEEECGGGTTCHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999875
No 35
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=2.5e-36 Score=305.62 Aligned_cols=163 Identities=23% Similarity=0.340 Sum_probs=138.1
Q ss_pred CeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc---------eEEEEe
Q psy208 275 PILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN---------LKFGYF 345 (443)
Q Consensus 275 ~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~---------~~ig~~ 345 (443)
.+|+++||+++|+ ++++|+|+||+|++|++++|+||||||||||||+|+|+++|++|+|.+++. ..+||+
T Consensus 10 ~~l~~~~l~~~y~-~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v 88 (372)
T 1v43_A 10 VEVKLENLTKRFG-NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMV 88 (372)
T ss_dssp CCEEEEEEEEEET-TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEE
T ss_pred eeEEEEEEEEEEC-CEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChhhCcEEEE
Confidence 3699999999995 567999999999999999999999999999999999999999999988642 359999
Q ss_pred ccCcccccccchhHHHHHHHhCC--CCC----HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEE
Q psy208 346 SQHHVDQLDMNLRCVQLLEAAFP--GKP----QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVL 419 (443)
Q Consensus 346 ~Q~~~~~l~~~~~~~~~~~~~~~--~~~----~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiL 419 (443)
+|++ .+.+..++.+++..... ... .+.+.++++.+++. +..++++.+|||||||||+|||||+.+|++|||
T Consensus 89 ~Q~~--~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLL 165 (372)
T 1v43_A 89 FQSY--AVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIE-ELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLM 165 (372)
T ss_dssp EC--------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCG-GGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEE
T ss_pred ecCc--ccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCh-hHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9985 35567788888764321 122 23577889999996 578899999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHccc
Q psy208 420 DEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 420 DEPTn~LD~~s~~~l~~~L~~~ 441 (443)
||||++||+.+++.+.+.|+++
T Consensus 166 DEP~s~LD~~~r~~l~~~l~~l 187 (372)
T 1v43_A 166 DEPLSNLDAKLRVAMRAEIKKL 187 (372)
T ss_dssp ESTTTTSCHHHHHHHHHHHHHH
T ss_pred cCCCccCCHHHHHHHHHHHHHH
Confidence 9999999999999999998765
No 36
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=1.9e-36 Score=299.16 Aligned_cols=164 Identities=26% Similarity=0.383 Sum_probs=136.9
Q ss_pred CeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-----------eEEE
Q psy208 275 PILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-----------LKFG 343 (443)
Q Consensus 275 ~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~ig 343 (443)
..|+++||+|+|++++++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.+++. ..+|
T Consensus 52 ~~i~~~~vs~~y~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~ 131 (306)
T 3nh6_A 52 GRIEFENVHFSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIG 131 (306)
T ss_dssp CCEEEEEEEEESSTTCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEE
T ss_pred CeEEEEEEEEEcCCCCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceE
Confidence 35999999999975678999999999999999999999999999999999999999999998652 2599
Q ss_pred EeccCcccccccchhHHHHHHHhCCCCCHHHHHHHHhcCCCChh----------hhhccCCCCCHHHHHHHHHHHHhccC
Q psy208 344 YFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGD----------LALQFVGSLSGGQKSRVAFARMCMAA 413 (443)
Q Consensus 344 ~~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~----------~~~~~~~~LSgGekqRl~lA~al~~~ 413 (443)
|++|++. +. ..++.+++..........++...+..+++... ...+++.+|||||||||+|||||+.+
T Consensus 132 ~v~Q~~~--lf-~~Tv~eNi~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~ 208 (306)
T 3nh6_A 132 VVPQDTV--LF-NDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKA 208 (306)
T ss_dssp EECSSCC--CC-SEEHHHHHHTTSTTCCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHC
T ss_pred EEecCCc--cC-cccHHHHHHhhcccCCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhC
Confidence 9999873 33 34888888654434455666666666665321 22345579999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 414 PNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 414 p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
|+||||||||++||+.+...+.+.|.++
T Consensus 209 p~iLlLDEPts~LD~~~~~~i~~~l~~l 236 (306)
T 3nh6_A 209 PGIILLDEATSALDTSNERAIQASLAKV 236 (306)
T ss_dssp CSEEEEECCSSCCCHHHHHHHHHHHHHH
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999998764
No 37
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=5.2e-37 Score=294.28 Aligned_cols=162 Identities=27% Similarity=0.380 Sum_probs=134.8
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-----------eEEEE
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-----------LKFGY 344 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~ig~ 344 (443)
+|+++||+++|++++++|+|+||+|++|++++|+||||||||||+|+|+|+++|++|+|.+.+. ..++|
T Consensus 1 ml~~~~l~~~y~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (243)
T 1mv5_A 1 MLSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGF 80 (243)
T ss_dssp CEEEEEEEECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCE
T ss_pred CEEEEEEEEEeCCCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEE
Confidence 4899999999953567999999999999999999999999999999999999999999988541 24899
Q ss_pred eccCcccccccchhHHHHHHHh-CCCCCHHHHHHHHhcCCCChhhh-----------hccCCCCCHHHHHHHHHHHHhcc
Q psy208 345 FSQHHVDQLDMNLRCVQLLEAA-FPGKPQEEYRRQLGGFGVSGDLA-----------LQFVGSLSGGQKSRVAFARMCMA 412 (443)
Q Consensus 345 ~~Q~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~L~~~gl~~~~~-----------~~~~~~LSgGekqRl~lA~al~~ 412 (443)
++|++. +.. .++.+++... ........+...+..+++.. .. ++++.+|||||||||+|||||+.
T Consensus 81 v~q~~~--l~~-~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~ 156 (243)
T 1mv5_A 81 VSQDSA--IMA-GTIRENLTYGLEGDYTDEDLWQVLDLAFARS-FVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLR 156 (243)
T ss_dssp ECCSSC--CCC-EEHHHHTTSCTTSCSCHHHHHHHHHHHTCTT-TTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHH
T ss_pred EcCCCc--ccc-ccHHHHHhhhccCCCCHHHHHHHHHHhChHH-HHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhc
Confidence 999863 333 3788877532 12334566777788777742 22 34568999999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 413 APNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 413 ~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
+|++|||||||++||+.+++.+.+.|.++
T Consensus 157 ~p~lllLDEPts~LD~~~~~~i~~~l~~~ 185 (243)
T 1mv5_A 157 NPKILMLDEATASLDSESESMVQKALDSL 185 (243)
T ss_dssp CCSEEEEECCSCSSCSSSCCHHHHHHHHH
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999998764
No 38
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=3.3e-36 Score=305.05 Aligned_cols=162 Identities=22% Similarity=0.331 Sum_probs=139.2
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc---------------e
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN---------------L 340 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~---------------~ 340 (443)
+|+++||+++|+ ++++|+|+||+|.+|++++|+||||||||||||+|+|+++|++|+|.+++. .
T Consensus 3 ~l~~~~l~~~y~-~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~~r 81 (372)
T 1g29_1 3 GVRLVDVWKVFG-EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDR 81 (372)
T ss_dssp EEEEEEEEEEET-TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGS
T ss_pred EEEEEeEEEEEC-CEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHhHC
Confidence 589999999995 568999999999999999999999999999999999999999999987531 2
Q ss_pred EEEEeccCcccccccchhHHHHHHHh--CCCCC----HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCC
Q psy208 341 KFGYFSQHHVDQLDMNLRCVQLLEAA--FPGKP----QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAP 414 (443)
Q Consensus 341 ~ig~~~Q~~~~~l~~~~~~~~~~~~~--~~~~~----~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p 414 (443)
.+||++|++. +.+..++.+++... ..... .+.+.++++.+++. +..++++.+|||||||||+|||||+.+|
T Consensus 82 ~ig~v~Q~~~--l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~r~~~~LSGGq~QRvalArAL~~~P 158 (372)
T 1g29_1 82 DIAMVFQSYA--LYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLT-ELLNRKPRELSGGQRQRVALGRAIVRKP 158 (372)
T ss_dssp SEEEECSCCC--CCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCG-GGTTCCGGGSCHHHHHHHHHHHHHHTCC
T ss_pred CEEEEeCCCc--cCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCc-hHhcCCcccCCHHHHHHHHHHHHHhcCC
Confidence 4999999863 55667777776431 11222 24577889999995 5788999999999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 415 NFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 415 ~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
++|||||||++||+.+++.+.+.|+++
T Consensus 159 ~lLLLDEP~s~LD~~~r~~l~~~l~~l 185 (372)
T 1g29_1 159 QVFLMDEPLSNLDAKLRVRMRAELKKL 185 (372)
T ss_dssp SEEEEECTTTTSCHHHHHHHHHHHHHH
T ss_pred CEEEECCCCccCCHHHHHHHHHHHHHH
Confidence 999999999999999999999998764
No 39
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=8.6e-36 Score=283.35 Aligned_cols=161 Identities=23% Similarity=0.346 Sum_probs=129.9
Q ss_pred CeEEEeeeEEEeCC-CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCceEEEEeccCccccc
Q psy208 275 PILQLSEVNFEYVP-GKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQL 353 (443)
Q Consensus 275 ~~l~~~~l~~~y~~-~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ig~~~Q~~~~~l 353 (443)
.+|+++||+++|++ ++++|+++||+|++|++++|+||||||||||+|+|+|+++|++|+|.+.+ .++|++|++. +
T Consensus 5 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g--~i~~v~q~~~--~ 80 (229)
T 2pze_A 5 TEVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG--RISFCSQFSW--I 80 (229)
T ss_dssp EEEEEEEEEECSSTTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS--CEEEECSSCC--C
T ss_pred ceEEEEEEEEEeCCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC--EEEEEecCCc--c
Confidence 37999999999962 46799999999999999999999999999999999999999999999976 5999999863 3
Q ss_pred ccchhHHHHHHHhCCCCCHHHHHHHHhcCCCChh----------hhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCC
Q psy208 354 DMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGD----------LALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPT 423 (443)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~----------~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPT 423 (443)
... ++.+++..... .........+..+++... ..++++.+|||||||||+|||||+.+|++|||||||
T Consensus 81 ~~~-tv~enl~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lllLDEPt 158 (229)
T 2pze_A 81 MPG-TIKENIIFGVS-YDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPF 158 (229)
T ss_dssp CSB-CHHHHHHTTSC-CCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTT
T ss_pred cCC-CHHHHhhccCC-cChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcc
Confidence 333 78888754221 223334444555554211 122346899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHH-ccc
Q psy208 424 NHLDIETIEALGKAI-NKY 441 (443)
Q Consensus 424 n~LD~~s~~~l~~~L-~~~ 441 (443)
++||+.+++.+.+.+ ..+
T Consensus 159 s~LD~~~~~~i~~~l~~~~ 177 (229)
T 2pze_A 159 GYLDVLTEKEIFESCVCKL 177 (229)
T ss_dssp TTSCHHHHHHHHHHCCCCC
T ss_pred cCCCHHHHHHHHHHHHHHh
Confidence 999999999999974 443
No 40
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=3.2e-36 Score=287.80 Aligned_cols=158 Identities=18% Similarity=0.300 Sum_probs=129.0
Q ss_pred eEEEeeeEEEeCC-CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCceEEEEeccCcccccc
Q psy208 276 ILQLSEVNFEYVP-GKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLD 354 (443)
Q Consensus 276 ~l~~~~l~~~y~~-~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ig~~~Q~~~~~l~ 354 (443)
+|+++||+++|++ ++++|+++||+|.+|++++|+||||||||||+|+|+|+++|++|+|.+.+ .++|++|++. +
T Consensus 3 ~l~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g--~i~~v~Q~~~--~- 77 (237)
T 2cbz_A 3 SITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG--SVAYVPQQAW--I- 77 (237)
T ss_dssp CEEEEEEEEESCTTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS--CEEEECSSCC--C-
T ss_pred eEEEEEEEEEeCCCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC--EEEEEcCCCc--C-
Confidence 5899999999963 36799999999999999999999999999999999999999999999976 5999999863 3
Q ss_pred cchhHHHHHHHhCCCCCHHHHHHHHhcCCCC------h----hhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCC
Q psy208 355 MNLRCVQLLEAAFPGKPQEEYRRQLGGFGVS------G----DLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTN 424 (443)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~------~----~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn 424 (443)
...++.+++..... .........+..+++. + ...++++.+|||||||||+|||||+.+|++|||||||+
T Consensus 78 ~~~tv~enl~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts 156 (237)
T 2cbz_A 78 QNDSLRENILFGCQ-LEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLS 156 (237)
T ss_dssp CSEEHHHHHHTTSC-CCTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTT
T ss_pred CCcCHHHHhhCccc-cCHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCccc
Confidence 35678888754221 1112223333333321 1 12457889999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHc
Q psy208 425 HLDIETIEALGKAIN 439 (443)
Q Consensus 425 ~LD~~s~~~l~~~L~ 439 (443)
+||+.++..+.+.|.
T Consensus 157 ~LD~~~~~~i~~~l~ 171 (237)
T 2cbz_A 157 AVDAHVGKHIFENVI 171 (237)
T ss_dssp TSCHHHHHHHHHHTT
T ss_pred ccCHHHHHHHHHHHH
Confidence 999999999999984
No 41
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=9.8e-36 Score=288.20 Aligned_cols=163 Identities=22% Similarity=0.280 Sum_probs=134.4
Q ss_pred CeEEEeeeEEEeCCC--CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-----------eE
Q psy208 275 PILQLSEVNFEYVPG--KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-----------LK 341 (443)
Q Consensus 275 ~~l~~~~l~~~y~~~--~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~ 341 (443)
.+|+++||+++|++. +++|+|+||+|++|++++|+||||||||||+|+|+|+++| +|+|.+.+. ..
T Consensus 16 ~~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~ 94 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSI 94 (260)
T ss_dssp CCEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTT
T ss_pred CeEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhcc
Confidence 469999999999643 4699999999999999999999999999999999999987 899988642 24
Q ss_pred EEEeccCcccccccchhHHHHHHHhCCCCCHHHHHHHHhcCCCChhh----------hhccCCCCCHHHHHHHHHHHHhc
Q psy208 342 FGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDL----------ALQFVGSLSGGQKSRVAFARMCM 411 (443)
Q Consensus 342 ig~~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~----------~~~~~~~LSgGekqRl~lA~al~ 411 (443)
++|++|++. +.. .++.+++.........+++...+..+++.... .++++.+|||||||||+|||||+
T Consensus 95 i~~v~Q~~~--l~~-~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~ 171 (260)
T 2ghi_A 95 IGIVPQDTI--LFN-ETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLL 171 (260)
T ss_dssp EEEECSSCC--CCS-EEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHH
T ss_pred EEEEcCCCc--ccc-cCHHHHHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHH
Confidence 999999863 232 47888875432223455667777777763211 23567899999999999999999
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 412 AAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 412 ~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
.+|++|||||||++||+.++..+.+.|.++
T Consensus 172 ~~p~lllLDEPts~LD~~~~~~i~~~l~~l 201 (260)
T 2ghi_A 172 KDPKIVIFDEATSSLDSKTEYLFQKAVEDL 201 (260)
T ss_dssp HCCSEEEEECCCCTTCHHHHHHHHHHHHHH
T ss_pred cCCCEEEEECccccCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999765
No 42
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=1.1e-35 Score=286.04 Aligned_cols=157 Identities=27% Similarity=0.361 Sum_probs=136.3
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-----------eEEEE
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-----------LKFGY 344 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~ig~ 344 (443)
+|+++||+++ ++|+|+||+|.+|++++|+||||||||||+|+|+|+++|+ |+|.+.+. ..+||
T Consensus 4 ~l~~~~l~~~-----~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~~ 77 (249)
T 2qi9_C 4 VMQLQDVAES-----TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHRAY 77 (249)
T ss_dssp EEEEEEEEET-----TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHEEE
T ss_pred EEEEEceEEE-----EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceEEE
Confidence 6999999985 5999999999999999999999999999999999999999 99998652 24999
Q ss_pred eccCcccccccchhHHHHHHHhC-CCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCC-------e
Q psy208 345 FSQHHVDQLDMNLRCVQLLEAAF-PGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPN-------F 416 (443)
Q Consensus 345 ~~Q~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~-------l 416 (443)
++|++. +....++.+++.... .....+.+.+++..+|+. +..++++.+|||||||||+|||||+.+|+ +
T Consensus 78 v~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~l 154 (249)
T 2qi9_C 78 LSQQQT--PPFATPVWHYLTLHQHDKTRTELLNDVAGALALD-DKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQL 154 (249)
T ss_dssp ECSCCC--CCTTCBHHHHHHTTCSSTTCHHHHHHHHHHTTCG-GGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCE
T ss_pred ECCCCc--cCCCCcHHHHHHHhhccCCcHHHHHHHHHHcCCh-hHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeE
Confidence 999863 345567888775321 111356788899999995 57789999999999999999999999999 9
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 417 LVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 417 LiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
|||||||++||+.+++.+.+.|+++
T Consensus 155 llLDEPts~LD~~~~~~l~~~l~~l 179 (249)
T 2qi9_C 155 LLLDEPMNSLDVAQQSALDKILSAL 179 (249)
T ss_dssp EEESSTTTTCCHHHHHHHHHHHHHH
T ss_pred EEEECCcccCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999775
No 43
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=5.9e-34 Score=329.57 Aligned_cols=163 Identities=21% Similarity=0.290 Sum_probs=136.4
Q ss_pred eEEEeeeEEEeCCC--CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcC-----------ceEE
Q psy208 276 ILQLSEVNFEYVPG--KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR-----------NLKF 342 (443)
Q Consensus 276 ~l~~~~l~~~y~~~--~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~i 342 (443)
-|+++||+|+|+++ .++|+|+||+|++|+++|||||+|||||||+++|.|+++|++|+|.+++ +.++
T Consensus 1076 ~I~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i 1155 (1321)
T 4f4c_A 1076 KVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQI 1155 (1321)
T ss_dssp CEEEEEEEECCTTSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTTE
T ss_pred eEEEEEEEEeCCCCCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHhhe
Confidence 59999999999642 4799999999999999999999999999999999999999999999875 2369
Q ss_pred EEeccCcccccccchhHHHHHHHh--CCCCCHHHHHHHHhcCCCChh------hhhc----cCCCCCHHHHHHHHHHHHh
Q psy208 343 GYFSQHHVDQLDMNLRCVQLLEAA--FPGKPQEEYRRQLGGFGVSGD------LALQ----FVGSLSGGQKSRVAFARMC 410 (443)
Q Consensus 343 g~~~Q~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~L~~~gl~~~------~~~~----~~~~LSgGekqRl~lA~al 410 (443)
+|+||+|. + .+.|+.+++... .+..+++++.+.+...++... -.+. ...+||||||||++|||||
T Consensus 1156 ~~V~Qdp~--L-F~gTIreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAl 1232 (1321)
T 4f4c_A 1156 AIVSQEPT--L-FDCSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARAL 1232 (1321)
T ss_dssp EEECSSCC--C-CSEEHHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHH
T ss_pred EEECCCCE--e-eCccHHHHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHH
Confidence 99999974 2 245778887532 134567888888888776321 1223 3357999999999999999
Q ss_pred ccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 411 MAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 411 ~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
+++|+||||||||++||+++...+.+.|++.
T Consensus 1233 lr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~ 1263 (1321)
T 4f4c_A 1233 VRNPKILLLDEATSALDTESEKVVQEALDRA 1263 (1321)
T ss_dssp HSCCSEEEEESCCCSTTSHHHHHHHHHHTTT
T ss_pred HhCCCEEEEeCccccCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999764
No 44
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=5.9e-35 Score=317.88 Aligned_cols=265 Identities=20% Similarity=0.234 Sum_probs=168.7
Q ss_pred HHHHhCCCChhhhhccCCCCChHHHH----------------------------HHHHHHHHHhh---hCCCeEEEEecC
Q psy208 121 VILAGLGFTPEMQKRATKHFSGGWRK----------------------------MAIIWLENYLQ---NWPTTLLVVSHD 169 (443)
Q Consensus 121 ~~L~~lgl~~~~~~~~~~~LSGGqr~----------------------------~~i~wL~~~L~---~~~~tviiVSHD 169 (443)
.+|..+||++...++++.+||||||| ..+.|+.++|+ +.+.|||+||||
T Consensus 184 ~~l~~~gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd 263 (670)
T 3ux8_A 184 GFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHD 263 (670)
T ss_dssp HHHHHTTCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred HHHHHcCCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 46889999865568999999999999 35566666664 457899999999
Q ss_pred HHHHhccCCcEEEE------eCCeeEEEcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy208 170 RHFLDSVPTDIFHL------HSQRIDTYRGNYEAFDKIKTEKLKNQQREIEAQRMHREHVQKFIDTFRYNANRASSVQSK 243 (443)
Q Consensus 170 r~fLd~v~~~i~~l------~~g~i~~~~G~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 243 (443)
++++.. ||+|++| ++|++. +.|++++...... ... ..+
T Consensus 264 ~~~~~~-~d~ii~l~~g~~~~~G~i~-~~g~~~~~~~~~~--------~~~---------~~~----------------- 307 (670)
T 3ux8_A 264 EDTMLA-ADYLIDIGPGAGIHGGEVV-AAGTPEEVMNDPN--------SLT---------GQY----------------- 307 (670)
T ss_dssp HHHHHH-CSEEEEECSSSGGGCCSEE-EEECHHHHHTCTT--------CHH---------HHH-----------------
T ss_pred HHHHhh-CCEEEEecccccccCCEEE-EecCHHHHhcCch--------hHH---------HHH-----------------
Confidence 999875 9999999 788885 5688766432100 000 000
Q ss_pred HHHHhcCCCCCCCccccccccccCCCCCCCCCeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHH
Q psy208 244 IKQLERLPELKPIEKEVEVVLKFPDTELLSPPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKII 323 (443)
Q Consensus 244 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l 323 (443)
+... ...+.+.. ........+++.+. ...+|+||||+|++|+++||+||||||||||+++|
T Consensus 308 ---~~~~-~~~~~~~~---------~~~~~~~~~~~~~~------~~~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i 368 (670)
T 3ux8_A 308 ---LSGK-KFIPIPAE---------RRRPDGRWLEVVGA------REHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEV 368 (670)
T ss_dssp ---HTTS-SCCCCCSS---------CCCCCSCEEEEEEE------CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTT
T ss_pred ---hccc-cccccccc---------cccccccceeecCc------cccccccceeEecCCCEEEEEeeCCCCHHHHHHHH
Confidence 0000 00000000 00111234444432 24589999999999999999999999999999876
Q ss_pred H----------------------cCCCCCCceEEEcCce-----------------------------------------
Q psy208 324 M----------------------GIISPTAGTRTVHRNL----------------------------------------- 340 (443)
Q Consensus 324 ~----------------------G~~~p~~G~i~~~~~~----------------------------------------- 340 (443)
+ |+..+ .|.+.+....
T Consensus 369 ~~~~~~~~~~~~~~~~g~~~~i~gl~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (670)
T 3ux8_A 369 LYKALAQKLHRAKAKPGEHRDIRGLEHL-DKVIDIDQSPIGRTPRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSF 447 (670)
T ss_dssp HHHHHHHHHHCCCSCCCSCSEEECGGGC-SEEEECCSSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHHHTCCGGGGCT
T ss_pred HHHHHHHHhhhccccccccccccccccc-CceeEeccccCCCCCCcchhhhhhhhHHHHHHhcccchhhhcccccccccc
Confidence 4 22211 2233221100
Q ss_pred -----------EEEEeccCccc------------------------------ccccchhHHHHHHHhCCCCCHHHHHHHH
Q psy208 341 -----------KFGYFSQHHVD------------------------------QLDMNLRCVQLLEAAFPGKPQEEYRRQL 379 (443)
Q Consensus 341 -----------~ig~~~Q~~~~------------------------------~l~~~~~~~~~~~~~~~~~~~~~~~~~L 379 (443)
..|+++++... ......++.+++.............+.+
T Consensus 448 ~~~~~~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~l 527 (670)
T 3ux8_A 448 NVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVTYKGKNIAEVLDMTVEDALDFFASIPKIKRKLETL 527 (670)
T ss_dssp TSTTTBCTTTTTCCC------------CCCTTTTTCCBCHHHHTCCBTTBCHHHHHTSBHHHHHHHTTTCHHHHHHHHHH
T ss_pred cCCCCccccccccceEeeecccccccccccccccCcccChhhhheeecCCCHHHHhhCCHHHHHHHHHHhhhHHHHHHHH
Confidence 00111110000 0000123333332211111123456778
Q ss_pred hcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCC---eEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 380 GGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPN---FLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 380 ~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~---lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
..+++.....++++.+|||||||||+|||||+.+|+ +|||||||++||+.++..+.+.|+++
T Consensus 528 ~~~~l~~~~~~~~~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l 592 (670)
T 3ux8_A 528 YDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRL 592 (670)
T ss_dssp HHTTCTTSBTTCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHH
T ss_pred HHcCCchhhccCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHH
Confidence 888886556688999999999999999999998875 99999999999999999999998765
No 45
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=100.00 E-value=6.1e-35 Score=323.07 Aligned_cols=272 Identities=23% Similarity=0.273 Sum_probs=180.5
Q ss_pred CHHHHHHHHHHhCCCChhhhhccCCCCChHHHH----------------------------HHHHHHHHHh---hhCCCe
Q psy208 114 KAPARASVILAGLGFTPEMQKRATKHFSGGWRK----------------------------MAIIWLENYL---QNWPTT 162 (443)
Q Consensus 114 ~~~~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~----------------------------~~i~wL~~~L---~~~~~t 162 (443)
++..|+. .|..+||+...+++++.+|||||+| ..+.||.+.| ++.+.|
T Consensus 497 ei~~Rl~-~L~~vGL~~l~l~r~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~T 575 (993)
T 2ygr_A 497 EIRSRLG-FLLDVGLEYLSLSRAAATLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNT 575 (993)
T ss_dssp HHHHHHH-HHHHHTGGGSCTTCBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCE
T ss_pred HHHHHHH-HHhhCCCCccccCCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEeCcccCCCHHHHHHHHHHHHHHHHcCCE
Confidence 3556764 5888999854578999999999999 5667777655 567899
Q ss_pred EEEEecCHHHHhccCCcEEEE------eCCeeEEEcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy208 163 LLVVSHDRHFLDSVPTDIFHL------HSQRIDTYRGNYEAFDKIKTEKLKNQQREIEAQRMHREHVQKFIDTFRYNANR 236 (443)
Q Consensus 163 viiVSHDr~fLd~v~~~i~~l------~~g~i~~~~G~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 236 (443)
||+||||+++++ .||+|++| ++|++ +|.|+|+++...++.. . ..+
T Consensus 576 VIvVeHdl~~i~-~ADrIi~Lgp~aG~~gG~i-v~~G~~~e~~~~~~~l--------t---------~~~---------- 626 (993)
T 2ygr_A 576 LIVVEHDEDTIE-HADWIVDIGPGAGEHGGRI-VHSGPYDELLRNKDSI--------T---------GAY---------- 626 (993)
T ss_dssp EEEECCCHHHHH-TCSEEEEECSSSGGGCCSC-CEEECHHHHHHCTTCH--------H---------HHH----------
T ss_pred EEEECCCHHHHH-hCCEEEEecCccccCCCEE-EEeeCHHHhhhhhHHH--------H---------HHH----------
Confidence 999999999997 69999999 45665 5889999885431100 0 000
Q ss_pred HHHHHHHHHHHhcCCCCCCCccccccccccCCCCCCCCCeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcH
Q psy208 237 ASSVQSKIKQLERLPELKPIEKEVEVVLKFPDTELLSPPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGK 316 (443)
Q Consensus 237 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGK 316 (443)
+....... .+... ......++|++++++. ..|+||||+|++|+++||+|+|||||
T Consensus 627 ----------l~g~~~~~-~~~~~--------~~~~~~~~L~v~~l~~------~~Lk~Vsl~I~~GeivaI~G~nGSGK 681 (993)
T 2ygr_A 627 ----------LSGRESIE-IPAIR--------RSVDPRRQLTVVGARE------HNLRGIDVSFPLGVLTSVTGVSGSGK 681 (993)
T ss_dssp ----------HHTSSCCC-CCSSC--------CCCCSSSEEEEEEECS------TTCCSEEEEEESSSEEEEECSTTSSH
T ss_pred ----------hccCcccc-Ccccc--------ccCCCCceEEEecCcc------ccccCceEEECCCCEEEEEcCCCCCH
Confidence 00000000 00000 0001135799999862 26999999999999999999999999
Q ss_pred HHHHHHHH-c----CCC---CCCceE-EEcCc---eEEEEeccCcccc--------------------------------
Q psy208 317 TTLLKIIM-G----IIS---PTAGTR-TVHRN---LKFGYFSQHHVDQ-------------------------------- 352 (443)
Q Consensus 317 STLlk~l~-G----~~~---p~~G~i-~~~~~---~~ig~~~Q~~~~~-------------------------------- 352 (443)
|||+++|+ | .+. +..|.+ .+.+. .++.+++|.+...
T Consensus 682 STLl~~il~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~i~idq~pig~~~rs~paty~~~~d~ir~lfa~~p~ar~~gy~ 761 (993)
T 2ygr_A 682 STLVNDILAAVLANRLNGARQVPGRHTRVTGLDYLDKLVRIDQSPIGRTPRSNPATYTGVFDKIRTLFAATNEAKVRGYK 761 (993)
T ss_dssp HHHHTTTHHHHHHHHTTCCCCCCCSEEEECCCTTCSEEECCCCSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHTTTCC
T ss_pred HHHHHHHHHHHHHhhhcCCcCCCCceeeecCccccceEEEecCcccccCcccchhhhhhHHHHHHHHhccCHHHHHhccc
Confidence 99999853 2 222 234543 12110 1222333332100
Q ss_pred -----cc----------------------c--------------------------------chhHHHHHHHhCCCCC-H
Q psy208 353 -----LD----------------------M--------------------------------NLRCVQLLEAAFPGKP-Q 372 (443)
Q Consensus 353 -----l~----------------------~--------------------------------~~~~~~~~~~~~~~~~-~ 372 (443)
++ . ..++.+.+. .+.... .
T Consensus 762 ~~~fsfn~~~grC~~C~g~G~~~~e~~fl~~v~~~ce~c~G~r~~~e~l~v~~~g~si~dvl~ltv~e~l~-~~~~~~~~ 840 (993)
T 2ygr_A 762 PGRFSFNVKGGRCEACTGDGTIKIEMNFLPDVYVPCEVCQGARYNRETLEVHYKGKTVSEVLDMSIEEAAE-FFEPIAGV 840 (993)
T ss_dssp TTTTCTTSTTTBCTTTTSSSEEEECCTTSCCEEEECTTTTTCSBCGGGGGCCBTTBCHHHHHSSBHHHHHH-HSTTCHHH
T ss_pred ccccccccccccccccccccceeehhhccccceeeehhccccccchhhhhhhccCCCHHHHhhccHHHHHH-HhhcchHH
Confidence 00 0 011122221 111111 1
Q ss_pred HHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCC---CeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 373 EEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAP---NFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 373 ~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p---~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
....++|..+|+.....++++.+|||||||||+||++|+.+| +||||||||+|||+.++..|.+.|.++
T Consensus 841 ~~~~~~L~~lgL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L 912 (993)
T 2ygr_A 841 HRYLRTLVDVGLGYVRLGQPAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGL 912 (993)
T ss_dssp HHHHHHHHHTTGGGSBTTCCGGGSCHHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcccccCccccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHH
Confidence 234578889998644678999999999999999999999865 999999999999999999999998764
No 46
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=100.00 E-value=1.9e-35 Score=326.04 Aligned_cols=271 Identities=21% Similarity=0.278 Sum_probs=180.1
Q ss_pred CHHHHHHHHHHhCCCChhhhhccCCCCChHHHH----------------------------HHHHHHHHHh---hhCCCe
Q psy208 114 KAPARASVILAGLGFTPEMQKRATKHFSGGWRK----------------------------MAIIWLENYL---QNWPTT 162 (443)
Q Consensus 114 ~~~~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~----------------------------~~i~wL~~~L---~~~~~t 162 (443)
++..|+ ..|..+||+...++|++.+|||||+| ..+.||.+.| ++.+.|
T Consensus 480 ei~~Rl-~~L~~vGL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~T 558 (972)
T 2r6f_A 480 EIRDRL-GFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNT 558 (972)
T ss_dssp HHHHHH-HHHHHHTCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCE
T ss_pred HHHHHH-HHhhhCCCCccccCCccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCE
Confidence 355676 45899999865578999999999999 4666777665 467889
Q ss_pred EEEEecCHHHHhccCCcEEEE------eCCeeEEEcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy208 163 LLVVSHDRHFLDSVPTDIFHL------HSQRIDTYRGNYEAFDKIKTEKLKNQQREIEAQRMHREHVQKFIDTFRYNANR 236 (443)
Q Consensus 163 viiVSHDr~fLd~v~~~i~~l------~~g~i~~~~G~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 236 (443)
||+||||++++. .||+|++| ++|++ ++.|+|+++....+. .. ..+
T Consensus 559 VIvVeHdl~~i~-~ADrIi~LgpgaG~~gG~i-v~~G~~~e~~~~~~s--------lt---------~~~---------- 609 (972)
T 2r6f_A 559 LIVVEHDEDTML-AADYLIDIGPGAGIHGGEV-VAAGTPEEVMNDPNS--------LT---------GQY---------- 609 (972)
T ss_dssp EEEECCCHHHHH-SCSEEEEECSSSGGGCCSE-EEEECTTTTTTCTTC--------TT---------HHH----------
T ss_pred EEEEecCHHHHH-hCCEEEEeCCCccCCCCEE-EEecCHHHHHhhhHH--------HH---------HHH----------
Confidence 999999999997 59999999 45666 588999887542110 00 000
Q ss_pred HHHHHHHHHHHhcCCCCCCCccccccccccCCCCCCCCCeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcH
Q psy208 237 ASSVQSKIKQLERLPELKPIEKEVEVVLKFPDTELLSPPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGK 316 (443)
Q Consensus 237 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGK 316 (443)
+...... +.+.. ......++|++++++. ..|+||||+|++|+++||+|+|||||
T Consensus 610 ----------l~g~~~~-~~~~~---------~~~~~~~~L~v~~l~~------~~Lk~Vsl~I~~Geiv~I~G~nGSGK 663 (972)
T 2r6f_A 610 ----------LSGKKFI-PIPAE---------RRRPDGRWLEVVGARE------HNLKNVSVKIPLGTFVAVTGVSGSGK 663 (972)
T ss_dssp ----------HHTSSCC-CCCSS---------CCCCCSCEEEEEEECS------SSCCSEEEEEESSSEEECCBCTTSSH
T ss_pred ----------hcCCccc-cCccc---------cccccceEEEEecCcc------cccccceEEEcCCCEEEEEcCCCCCH
Confidence 0000000 00000 0011236799999862 36999999999999999999999999
Q ss_pred HHHHHHHH-cCC-------CCCCceE-EEcC---ceEEEEeccCcccc--------------------------------
Q psy208 317 TTLLKIIM-GII-------SPTAGTR-TVHR---NLKFGYFSQHHVDQ-------------------------------- 352 (443)
Q Consensus 317 STLlk~l~-G~~-------~p~~G~i-~~~~---~~~ig~~~Q~~~~~-------------------------------- 352 (443)
|||+++|+ |.+ .+..|.+ .+.+ -.++.+++|.+...
T Consensus 664 STLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~I~idq~pig~~~rs~paty~~v~d~ir~lfa~~~ear~~Gy~ 743 (972)
T 2r6f_A 664 STLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKVIDIDQSPIGRTPRSNPATYTGVFDDIRDVFASTNEAKVRGYK 743 (972)
T ss_dssp HHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSEEEEECSSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccceEEEEcCcccccCccccchhhhhHHHHHHHHhccCHHHHHhccc
Confidence 99999854 221 1234431 1111 01122233322100
Q ss_pred -----cc------------------------------------------------------cchhHHHHHHHhCCCCC-H
Q psy208 353 -----LD------------------------------------------------------MNLRCVQLLEAAFPGKP-Q 372 (443)
Q Consensus 353 -----l~------------------------------------------------------~~~~~~~~~~~~~~~~~-~ 372 (443)
++ ...++.+.+. .+.... .
T Consensus 744 ~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ce~c~G~r~~~e~l~v~~~g~sI~dvl~ltv~e~l~-~~~~~~~~ 822 (972)
T 2r6f_A 744 KGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVTYKGKNIAEVLDMTVEDALD-FFASIPKI 822 (972)
T ss_dssp TTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEECTTTTTCCBCTTGGGCCBTTBCHHHHHTSBHHHHHH-HTCSCHHH
T ss_pred ccccccccccccccccccccceeeehhccccccccccccccccccchhhhhhccCCCHHHhhhcCHHHHHH-HHhcchhH
Confidence 00 0112222221 111111 1
Q ss_pred HHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCC---CeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 373 EEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAP---NFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 373 ~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p---~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
....++|..+|+.....++++.+|||||||||+||++|+.+| +||||||||+|||+.++..|.+.|.++
T Consensus 823 ~~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L 894 (972)
T 2r6f_A 823 KRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRL 894 (972)
T ss_dssp HHHHHHHHHTTCSSSBTTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcccccCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHH
Confidence 234678899999754678999999999999999999999865 999999999999999999999998764
No 47
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=3.8e-34 Score=317.33 Aligned_cols=268 Identities=21% Similarity=0.324 Sum_probs=174.9
Q ss_pred HHHHHHHhCCCChhhhhccCCCCChHHHH----------------------------HHHHHHHHHhhh---CCCeEEEE
Q psy208 118 RASVILAGLGFTPEMQKRATKHFSGGWRK----------------------------MAIIWLENYLQN---WPTTLLVV 166 (443)
Q Consensus 118 rv~~~L~~lgl~~~~~~~~~~~LSGGqr~----------------------------~~i~wL~~~L~~---~~~tviiV 166 (443)
+....|..+|+....+++++.+|||||+| ..+.||.+.|++ .+.|||+|
T Consensus 443 ~~~~~L~~vgL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivV 522 (916)
T 3pih_A 443 KRLEFLVDVGLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVV 522 (916)
T ss_dssp HHHHHHHTTTCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEE
T ss_pred HHHHHHHHcCCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 34567888999865568999999999999 456677776654 46799999
Q ss_pred ecCHHHHhccCCcEEEE------eCCeeEEEcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy208 167 SHDRHFLDSVPTDIFHL------HSQRIDTYRGNYEAFDKIKTEKLKNQQREIEAQRMHREHVQKFIDTFRYNANRASSV 240 (443)
Q Consensus 167 SHDr~fLd~v~~~i~~l------~~g~i~~~~G~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 240 (443)
|||++++.. ||+|++| ++|++ ++.|+++++....+. ... ..+
T Consensus 523 tHd~~~~~~-aD~ii~lgpgag~~~G~i-v~~G~~~e~~~~~~~-------~~~---------~~~-------------- 570 (916)
T 3pih_A 523 EHDEEVIRN-ADHIIDIGPGGGTNGGRV-VFQGTVDELLKNPDS-------SLT---------GEY-------------- 570 (916)
T ss_dssp CCCHHHHHT-CSEEEEEESSSGGGCSEE-EEEECHHHHHHSCTT-------CHH---------HHH--------------
T ss_pred eCCHHHHHh-CCEEEEEcCCcccCCCEE-EEeechhhhhcCchh-------cch---------hhh--------------
Confidence 999999976 9999999 67777 478999887432110 000 000
Q ss_pred HHHHHHHhcCCCCCCCccccccccccCCCCCCCCCeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHH
Q psy208 241 QSKIKQLERLPELKPIEKEVEVVLKFPDTELLSPPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLL 320 (443)
Q Consensus 241 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLl 320 (443)
+....... .+.........+++++++ ...|+||||+|++|++++|+|+||||||||+
T Consensus 571 ------l~~~~~~~-----------~~~~~~~~~~~l~v~~~~------~~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl 627 (916)
T 3pih_A 571 ------LSGKRKIT-----------VNKTRRLPYASLKIKGVR------HNNLKNIDVEIPLGVFVCVTGVSGSGKSSLV 627 (916)
T ss_dssp ------HHSSSCCC-----------CCSSCCCCSSEEEEEEEC------STTCCSEEEEEESSSEEEEECSTTSSHHHHH
T ss_pred ------hhcccccc-----------cccccccccceEEEeeec------cccccccceEEcCCcEEEEEccCCCChhhhH
Confidence 00000000 001111112346666553 2479999999999999999999999999997
Q ss_pred ---------HHHHcCCCCCCceEEEcCc---eEE----------------------------------------------
Q psy208 321 ---------KIIMGIISPTAGTRTVHRN---LKF---------------------------------------------- 342 (443)
Q Consensus 321 ---------k~l~G~~~p~~G~i~~~~~---~~i---------------------------------------------- 342 (443)
+++.+...+..+...+.+. ..+
T Consensus 628 ~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~~at~~~~~~~ir~lfa~~~~a~~~g~~~~~f 707 (916)
T 3pih_A 628 METLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSNPATYTKVFDEIRSLFAMTPAAKARGYNKSRF 707 (916)
T ss_dssp HHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCCHHHHSSHHHHHHHHHTTSHHHHHSSCCGGGG
T ss_pred HHHHHHHHHHHhccccccccccccccccccccceEeeccccccccccccccchhhhHHHHHHHhccchHHHhcccccccc
Confidence 4555544333221111110 011
Q ss_pred ---------------EEeccCcccccc------------------------------cchhHHHHHHHhCCCC-CHHHHH
Q psy208 343 ---------------GYFSQHHVDQLD------------------------------MNLRCVQLLEAAFPGK-PQEEYR 376 (443)
Q Consensus 343 ---------------g~~~Q~~~~~l~------------------------------~~~~~~~~~~~~~~~~-~~~~~~ 376 (443)
|++.++.....+ ...++.+.+. .+... ......
T Consensus 708 s~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~~g~~i~~vl~~tv~eal~-f~~~~~~~~~~~ 786 (916)
T 3pih_A 708 SFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITYKGKNISDILDMTVDEALE-FFKNIPSIKRTL 786 (916)
T ss_dssp CTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCBTTBCHHHHHSSBHHHHHH-HTTTCHHHHHHH
T ss_pred cccccccccccccCcceEEEeeeccCcceeecccccccccchhhhhhhhccCCHHHHhhCCHHHHHH-HHhcchhHHHHH
Confidence 122221100000 0112222221 11111 124566
Q ss_pred HHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCC---CeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 377 RQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAP---NFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 377 ~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p---~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
+.|..+|+......+++.+|||||||||+|||+|+.+| +||||||||+|||+.+++.|.+.|.++
T Consensus 787 ~~L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L 854 (916)
T 3pih_A 787 QVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRL 854 (916)
T ss_dssp HHHHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCchhhccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHH
Confidence 78899999765678999999999999999999999875 799999999999999999999998764
No 48
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=2.1e-34 Score=293.27 Aligned_cols=161 Identities=24% Similarity=0.425 Sum_probs=139.2
Q ss_pred CeEEEeeeEEEeC-CCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-----------eEE
Q psy208 275 PILQLSEVNFEYV-PGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-----------LKF 342 (443)
Q Consensus 275 ~~l~~~~l~~~y~-~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~i 342 (443)
..|+++||+|+|+ ++.++|+|+||+|++|++++|+||||||||||||+|+|+++ ++|+|.+++. ..+
T Consensus 18 ~~i~~~~l~~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~rr~i 96 (390)
T 3gd7_A 18 GQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWRKAF 96 (390)
T ss_dssp CCEEEEEEEEESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHHHHTE
T ss_pred CeEEEEEEEEEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHHhCCE
Confidence 4699999999995 24679999999999999999999999999999999999998 8999998652 359
Q ss_pred EEeccCcccccccchhHHHHHHHhCCCCCHHHHHHHHhcCCCChhhhhccCCC-----------CCHHHHHHHHHHHHhc
Q psy208 343 GYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGS-----------LSGGQKSRVAFARMCM 411 (443)
Q Consensus 343 g~~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~~~~-----------LSgGekqRl~lA~al~ 411 (443)
||++|++. +.. .++.+++.. +.....+++.+++..+++. +..++++.. |||||||||+|||||+
T Consensus 97 g~v~Q~~~--lf~-~tv~enl~~-~~~~~~~~v~~~l~~~~L~-~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~ 171 (390)
T 3gd7_A 97 GVIPQKVF--IFS-GTFRKNLDP-NAAHSDQEIWKVADEVGLR-SVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVL 171 (390)
T ss_dssp EEESCCCC--CCS-EEHHHHHCT-TCCSCHHHHHHHHHHTTCH-HHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHH
T ss_pred EEEcCCcc--cCc-cCHHHHhhh-ccccCHHHHHHHHHHhCCH-HHHhhcccccccccccccccCCHHHHHHHHHHHHHh
Confidence 99999863 222 477777742 2334567788899999985 577888887 9999999999999999
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 412 AAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 412 ~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
.+|++|||||||++||+.++..+.+.|++.
T Consensus 172 ~~P~lLLLDEPts~LD~~~~~~l~~~l~~~ 201 (390)
T 3gd7_A 172 SKAKILLLDEPSAHLDPVTYQIIRRTLKQA 201 (390)
T ss_dssp TTCCEEEEESHHHHSCHHHHHHHHHHHHTT
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999764
No 49
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=2.8e-33 Score=299.98 Aligned_cols=163 Identities=25% Similarity=0.336 Sum_probs=138.0
Q ss_pred CeEEEeeeEEEeCCC-CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-----------eEE
Q psy208 275 PILQLSEVNFEYVPG-KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-----------LKF 342 (443)
Q Consensus 275 ~~l~~~~l~~~y~~~-~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~i 342 (443)
..|+++||+|+|+++ +++|+|+||+|++|++++|+||||||||||+|+|+|+++|++|+|.+++. ..+
T Consensus 340 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i 419 (582)
T 3b5x_A 340 GEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHF 419 (582)
T ss_pred CeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcCe
Confidence 469999999999643 67999999999999999999999999999999999999999999988651 359
Q ss_pred EEeccCcccccccchhHHHHHHHhC-CCCCHHHHHHHHhcCCCChhhhh-----------ccCCCCCHHHHHHHHHHHHh
Q psy208 343 GYFSQHHVDQLDMNLRCVQLLEAAF-PGKPQEEYRRQLGGFGVSGDLAL-----------QFVGSLSGGQKSRVAFARMC 410 (443)
Q Consensus 343 g~~~Q~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~L~~~gl~~~~~~-----------~~~~~LSgGekqRl~lA~al 410 (443)
||++|++. +.. .++.+++.... +..+++++.+.++.+++.. ..+ +++.+||||||||++||||+
T Consensus 420 ~~v~Q~~~--l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral 495 (582)
T 3b5x_A 420 ALVSQNVH--LFN-DTIANNIAYAAEGEYTREQIEQAARQAHAME-FIENMPQGLDTVIGENGTSLSGGQRQRVAIARAL 495 (582)
T ss_pred EEEcCCCc--ccc-ccHHHHHhccCCCCCCHHHHHHHHHHCCCHH-HHHhCcccccchhcCCCCcCCHHHHHHHHHHHHH
Confidence 99999873 332 48888876433 3445677888888887742 222 34579999999999999999
Q ss_pred ccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 411 MAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 411 ~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
+.+|++|||||||++||+.+.+.+.+.|.++
T Consensus 496 ~~~p~illlDEpts~LD~~~~~~i~~~l~~~ 526 (582)
T 3b5x_A 496 LRDAPVLILDEATSALDTESERAIQAALDEL 526 (582)
T ss_pred HcCCCEEEEECccccCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998765
No 50
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=3.7e-33 Score=299.03 Aligned_cols=163 Identities=25% Similarity=0.287 Sum_probs=138.7
Q ss_pred CeEEEeeeEEEeCCC-CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-----------eEE
Q psy208 275 PILQLSEVNFEYVPG-KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-----------LKF 342 (443)
Q Consensus 275 ~~l~~~~l~~~y~~~-~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~i 342 (443)
..|+++||+|+|+++ +++|+|+||+|++|++++|+||||||||||+|+|+|+++|++|+|.+++. ..+
T Consensus 340 ~~i~~~~v~~~y~~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i 419 (582)
T 3b60_A 340 GDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQV 419 (582)
T ss_dssp CCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTE
T ss_pred CcEEEEEEEEEcCCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhhC
Confidence 469999999999643 67999999999999999999999999999999999999999999998652 259
Q ss_pred EEeccCcccccccchhHHHHHHHhC-CCCCHHHHHHHHhcCCCChhhhh-----------ccCCCCCHHHHHHHHHHHHh
Q psy208 343 GYFSQHHVDQLDMNLRCVQLLEAAF-PGKPQEEYRRQLGGFGVSGDLAL-----------QFVGSLSGGQKSRVAFARMC 410 (443)
Q Consensus 343 g~~~Q~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~L~~~gl~~~~~~-----------~~~~~LSgGekqRl~lA~al 410 (443)
+|++|++. +.. .++.+++.... +...++++.+.++.+++.. ..+ +++.+||||||||++||||+
T Consensus 420 ~~v~Q~~~--l~~-~tv~eni~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral 495 (582)
T 3b60_A 420 ALVSQNVH--LFN-DTVANNIAYARTEEYSREQIEEAARMAYAMD-FINKMDNGLDTIIGENGVLLSGGQRQRIAIARAL 495 (582)
T ss_dssp EEECSSCC--CCS-SBHHHHHHTTTTSCCCHHHHHHHHHTTTCHH-HHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHH
T ss_pred eEEccCCc--CCC-CCHHHHHhccCCCCCCHHHHHHHHHHcCCHH-HHHhccccccccccCCCCCCCHHHHHHHHHHHHH
Confidence 99999874 333 48888886433 3456777888888888742 222 34679999999999999999
Q ss_pred ccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 411 MAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 411 ~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
+.+|++|||||||++||+.+.+.+.+.|.++
T Consensus 496 ~~~p~illlDEpts~LD~~~~~~i~~~l~~~ 526 (582)
T 3b60_A 496 LRDSPILILDEATSALDTESERAIQAALDEL 526 (582)
T ss_dssp HHCCSEEEEETTTSSCCHHHHHHHHHHHHHH
T ss_pred HhCCCEEEEECccccCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998764
No 51
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=1.6e-33 Score=276.54 Aligned_cols=154 Identities=23% Similarity=0.346 Sum_probs=114.8
Q ss_pred CeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCceEEEEeccCcccccc
Q psy208 275 PILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLD 354 (443)
Q Consensus 275 ~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ig~~~Q~~~~~l~ 354 (443)
++|+++||++.+ +++|+++||+|++|++++|+||||||||||+|+|+|+++|++|+|.+.+ .++|++|++. +.
T Consensus 39 ~~l~~~~l~~~~---~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g--~i~~v~Q~~~--l~ 111 (290)
T 2bbs_A 39 DSLSFSNFSLLG---TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG--RISFCSQNSW--IM 111 (290)
T ss_dssp -----------C---CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS--CEEEECSSCC--CC
T ss_pred ceEEEEEEEEcC---ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC--EEEEEeCCCc--cC
Confidence 469999999863 4799999999999999999999999999999999999999999999876 5899999863 33
Q ss_pred cchhHHHHHHHhCCCCCHHHHHHHHhcCCCChh----------hhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCC
Q psy208 355 MNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGD----------LALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTN 424 (443)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~----------~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn 424 (443)
. .++.+++. .. ......+...+..+++... ...+++.+|||||||||+|||||+.+|++|||||||+
T Consensus 112 ~-~tv~enl~-~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts 188 (290)
T 2bbs_A 112 P-GTIKENII-GV-SYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFG 188 (290)
T ss_dssp S-SBHHHHHH-TT-CCCHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEEEESTTT
T ss_pred c-ccHHHHhh-Cc-ccchHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcc
Confidence 3 37888876 32 1223334445555555321 1123458999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHH
Q psy208 425 HLDIETIEALGKAI 438 (443)
Q Consensus 425 ~LD~~s~~~l~~~L 438 (443)
+||+.++..+.+.+
T Consensus 189 ~LD~~~~~~i~~~l 202 (290)
T 2bbs_A 189 YLDVLTEKEIFESC 202 (290)
T ss_dssp TCCHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHH
Confidence 99999999999974
No 52
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=9.8e-33 Score=296.50 Aligned_cols=162 Identities=28% Similarity=0.385 Sum_probs=136.3
Q ss_pred EEEeeeEEEeCCC--CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-----------eEEE
Q psy208 277 LQLSEVNFEYVPG--KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-----------LKFG 343 (443)
Q Consensus 277 l~~~~l~~~y~~~--~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~ig 343 (443)
|+++||+|+|++. +++|+|+||+|++|+++||+||||||||||+|+|+|+++|++|+|.+++. ..++
T Consensus 342 i~~~~v~~~y~~~~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~ 421 (595)
T 2yl4_A 342 LEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIG 421 (595)
T ss_dssp EEEEEEEEECSSCTTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTEETTTBCHHHHHHSEE
T ss_pred EEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCEEhhhCCHHHHHhceE
Confidence 8999999999642 47999999999999999999999999999999999999999999998652 2599
Q ss_pred EeccCcccccccchhHHHHHHHhCCC---CCHHHHHHHHhcCCCChh------hhh----ccCCCCCHHHHHHHHHHHHh
Q psy208 344 YFSQHHVDQLDMNLRCVQLLEAAFPG---KPQEEYRRQLGGFGVSGD------LAL----QFVGSLSGGQKSRVAFARMC 410 (443)
Q Consensus 344 ~~~Q~~~~~l~~~~~~~~~~~~~~~~---~~~~~~~~~L~~~gl~~~------~~~----~~~~~LSgGekqRl~lA~al 410 (443)
|++|++. +.. .++.+++....+. ..++++.+.++.+++... ..+ .++.+||||||||++||||+
T Consensus 422 ~v~Q~~~--l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iAral 498 (595)
T 2yl4_A 422 TVSQEPI--LFS-CSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARAL 498 (595)
T ss_dssp EECSSCC--CCS-SBHHHHHHTTSSSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHHHHH
T ss_pred EEccCCc--ccC-CCHHHHHhhcCCCccccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHH
Confidence 9999874 332 4888888643332 456778888888887421 112 23489999999999999999
Q ss_pred ccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 411 MAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 411 ~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
+.+|++|||||||++||+.+.+.+.+.|.++
T Consensus 499 ~~~p~illlDEpts~LD~~~~~~i~~~l~~~ 529 (595)
T 2yl4_A 499 LKNPKILLLDEATSALDAENEYLVQEALDRL 529 (595)
T ss_dssp HHCCSEEEEECCCSSCCHHHHHHHHHHHHHH
T ss_pred HcCCCEEEEECcccCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998764
No 53
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=4.8e-33 Score=297.92 Aligned_cols=164 Identities=26% Similarity=0.363 Sum_probs=136.8
Q ss_pred CeEEEeeeEEEeCC-CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-----------eEE
Q psy208 275 PILQLSEVNFEYVP-GKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-----------LKF 342 (443)
Q Consensus 275 ~~l~~~~l~~~y~~-~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~i 342 (443)
..|+++||+|+|++ ++++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.+++. ..+
T Consensus 338 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i 417 (578)
T 4a82_A 338 GRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQI 417 (578)
T ss_dssp CCEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTE
T ss_pred CeEEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhhe
Confidence 35999999999964 357999999999999999999999999999999999999999999998752 259
Q ss_pred EEeccCcccccccchhHHHHHHHhCCCCCHHHHHHHHhcCCCChh----------hhhccCCCCCHHHHHHHHHHHHhcc
Q psy208 343 GYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGD----------LALQFVGSLSGGQKSRVAFARMCMA 412 (443)
Q Consensus 343 g~~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~----------~~~~~~~~LSgGekqRl~lA~al~~ 412 (443)
||++|++. +. ..|+.+++....+...++++.+.+...++... ....+..+||||||||++||||++.
T Consensus 418 ~~v~Q~~~--l~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~ 494 (578)
T 4a82_A 418 GLVQQDNI--LF-SDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLN 494 (578)
T ss_dssp EEECSSCC--CC-SSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHH
T ss_pred EEEeCCCc--cC-cccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHc
Confidence 99999863 33 33888888654455566777777777665321 1123456899999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 413 APNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 413 ~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
+|++|||||||++||+.+...+.+.|.++
T Consensus 495 ~p~illlDEpts~LD~~~~~~i~~~l~~~ 523 (578)
T 4a82_A 495 NPPILILDEATSALDLESESIIQEALDVL 523 (578)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHH
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999988754
No 54
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=3.5e-33 Score=300.12 Aligned_cols=162 Identities=25% Similarity=0.376 Sum_probs=136.3
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-----------eEEEE
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-----------LKFGY 344 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~ig~ 344 (443)
.|+++||+|+|++++++|+|+||+|++|+++||+||||||||||+|+|+|+++|++|+|.+++. ..+||
T Consensus 354 ~i~~~~v~~~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~ 433 (598)
T 3qf4_B 354 EIEFKNVWFSYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGI 433 (598)
T ss_dssp CEEEEEEECCSSSSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEE
T ss_pred eEEEEEEEEECCCCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhceEE
Confidence 5999999999976678999999999999999999999999999999999999999999998752 25999
Q ss_pred eccCcccccccchhHHHHHHHhCCCCCHHHHHHHHhcCCCChhhhhc-----------cCCCCCHHHHHHHHHHHHhccC
Q psy208 345 FSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQ-----------FVGSLSGGQKSRVAFARMCMAA 413 (443)
Q Consensus 345 ~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~-----------~~~~LSgGekqRl~lA~al~~~ 413 (443)
++|++. +. ..++.+++....+..+++++.+.+...++. +..++ ...+||||||||++||||++.+
T Consensus 434 v~Q~~~--lf-~~tv~eni~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~ 509 (598)
T 3qf4_B 434 VLQDTI--LF-STTVKENLKYGNPGATDEEIKEAAKLTHSD-HFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLAN 509 (598)
T ss_dssp ECTTCC--CC-SSBHHHHHHSSSTTCCTTHHHHHTTTTTCH-HHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTC
T ss_pred EeCCCc--cc-cccHHHHHhcCCCCCCHHHHHHHHHHhCCH-HHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcC
Confidence 999973 22 348888886443444556677777777663 22333 2368999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 414 PNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 414 p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
|++|||||||++||+.+...+.+.|.++
T Consensus 510 p~illlDEpts~LD~~~~~~i~~~l~~~ 537 (598)
T 3qf4_B 510 PKILILDEATSNVDTKTEKSIQAAMWKL 537 (598)
T ss_dssp CSEEEECCCCTTCCHHHHHHHHHHHHHH
T ss_pred CCEEEEECCccCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999988764
No 55
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=2.8e-32 Score=292.37 Aligned_cols=164 Identities=24% Similarity=0.340 Sum_probs=136.3
Q ss_pred CeEEEeeeEEEeCC-CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-----------eEE
Q psy208 275 PILQLSEVNFEYVP-GKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-----------LKF 342 (443)
Q Consensus 275 ~~l~~~~l~~~y~~-~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~i 342 (443)
..|+++||+|+|++ ++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++. ..+
T Consensus 340 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i 419 (587)
T 3qf4_A 340 GSVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHI 419 (587)
T ss_dssp CCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHHE
T ss_pred CcEEEEEEEEEcCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhhe
Confidence 35999999999963 467999999999999999999999999999999999999999999998642 359
Q ss_pred EEeccCcccccccchhHHHHHHHhCCCCCHHHHHHHHhcCCCCh----------hhhhccCCCCCHHHHHHHHHHHHhcc
Q psy208 343 GYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSG----------DLALQFVGSLSGGQKSRVAFARMCMA 412 (443)
Q Consensus 343 g~~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~----------~~~~~~~~~LSgGekqRl~lA~al~~ 412 (443)
+|++|++. +. ..|+.+++....+...++++.+.+...++.. ....+++.+||||||||++||||++.
T Consensus 420 ~~v~Q~~~--lf-~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~ 496 (587)
T 3qf4_A 420 SAVPQETV--LF-SGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVK 496 (587)
T ss_dssp EEECSSCC--CC-SEEHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHT
T ss_pred EEECCCCc--Cc-CccHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHc
Confidence 99999973 33 3488888764434445666666665555421 12346778999999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 413 APNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 413 ~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
+|++|||||||++||+.+...+.+.|.++
T Consensus 497 ~p~illlDEpts~LD~~~~~~i~~~l~~~ 525 (587)
T 3qf4_A 497 KPKVLILDDCTSSVDPITEKRILDGLKRY 525 (587)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999998764
No 56
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.97 E-value=6.3e-30 Score=295.31 Aligned_cols=163 Identities=26% Similarity=0.371 Sum_probs=134.8
Q ss_pred eEEEeeeEEEeCCC--CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-----------eEE
Q psy208 276 ILQLSEVNFEYVPG--KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-----------LKF 342 (443)
Q Consensus 276 ~l~~~~l~~~y~~~--~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~i 342 (443)
.|+++||+|+|++. .++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.+++. ..+
T Consensus 387 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i 466 (1284)
T 3g5u_A 387 NLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREII 466 (1284)
T ss_dssp CEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHE
T ss_pred eEEEEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhhe
Confidence 59999999999742 47999999999999999999999999999999999999999999998752 259
Q ss_pred EEeccCcccccccchhHHHHHHHhCCCCCHHHHHHHHhcCCCChh----------hhhccCCCCCHHHHHHHHHHHHhcc
Q psy208 343 GYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGD----------LALQFVGSLSGGQKSRVAFARMCMA 412 (443)
Q Consensus 343 g~~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~----------~~~~~~~~LSgGekqRl~lA~al~~ 412 (443)
||++|++. +. ..++.+++....+....+++.+.+...++... ....+..+||||||||++||||++.
T Consensus 467 ~~v~Q~~~--l~-~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~ 543 (1284)
T 3g5u_A 467 GVVSQEPV--LF-ATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVR 543 (1284)
T ss_dssp EEECSSCC--CC-SSCHHHHHHHHCSSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHH
T ss_pred EEEcCCCc--cC-CccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhc
Confidence 99999973 33 34888888755544566666666655544211 1234566899999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 413 APNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 413 ~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
+|++|||||||++||+++...+.+.|...
T Consensus 544 ~p~iliLDEpts~LD~~~~~~i~~~l~~~ 572 (1284)
T 3g5u_A 544 NPKILLLDEATSALDTESEAVVQAALDKA 572 (1284)
T ss_dssp CCSEEEEESTTCSSCHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999888653
No 57
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.97 E-value=7.7e-30 Score=295.25 Aligned_cols=163 Identities=26% Similarity=0.344 Sum_probs=138.6
Q ss_pred eEEEeeeEEEeCC--CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-----------eEE
Q psy208 276 ILQLSEVNFEYVP--GKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-----------LKF 342 (443)
Q Consensus 276 ~l~~~~l~~~y~~--~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~i 342 (443)
-|+++||+|+|++ ++++|+|+||+|++|+.+||+||+|||||||+++|.|+++|++|+|.+++. .++
T Consensus 415 ~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i 494 (1321)
T 4f4c_A 415 DITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNV 494 (1321)
T ss_dssp CEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHE
T ss_pred cEEEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHhhcc
Confidence 4899999999964 358999999999999999999999999999999999999999999999752 369
Q ss_pred EEeccCcccccccchhHHHHHHHhCCCCCHHHHHHHHhcCCCChhh----------hhccCCCCCHHHHHHHHHHHHhcc
Q psy208 343 GYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDL----------ALQFVGSLSGGQKSRVAFARMCMA 412 (443)
Q Consensus 343 g~~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~----------~~~~~~~LSgGekqRl~lA~al~~ 412 (443)
||++|++. -.+.|+.+++....+..+++++.+.+...++.... ......+||||||||++||||+++
T Consensus 495 ~~v~Q~~~---Lf~~TI~eNI~~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~ 571 (1321)
T 4f4c_A 495 AVVSQEPA---LFNCTIEENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVR 571 (1321)
T ss_dssp EEECSSCC---CCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTT
T ss_pred cccCCcce---eeCCchhHHHhhhcccchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHcc
Confidence 99999973 23568888887555566788888888877763221 113446899999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 413 APNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 413 ~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
+|++|||||||++||+.+...+.++|.++
T Consensus 572 ~~~IliLDE~tSaLD~~te~~i~~~l~~~ 600 (1321)
T 4f4c_A 572 NPKILLLDEATSALDAESEGIVQQALDKA 600 (1321)
T ss_dssp CCSEEEEESTTTTSCTTTHHHHHHHHHHH
T ss_pred CCCEEEEecccccCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999888653
No 58
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.97 E-value=1.2e-30 Score=276.77 Aligned_cols=160 Identities=23% Similarity=0.277 Sum_probs=124.6
Q ss_pred EEE-eeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceE---------EEcC--------
Q psy208 277 LQL-SEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTR---------TVHR-------- 338 (443)
Q Consensus 277 l~~-~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i---------~~~~-------- 338 (443)
.++ +||+++|++...++.++| +|.+|+++||+||||||||||+|+|+|+++|++|++ .+.+
T Consensus 21 ~~~~~~ls~~yg~~~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~~ 99 (538)
T 1yqt_A 21 EQLEEDCVHRYGVNAFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFE 99 (538)
T ss_dssp ---CCCEEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHHH
T ss_pred hhHhcCcEEEECCccccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHHH
Confidence 455 699999964335899999 999999999999999999999999999999999984 1111
Q ss_pred -----ceEEEEeccCcccccc-cchhHHHHHHHhCCCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhcc
Q psy208 339 -----NLKFGYFSQHHVDQLD-MNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMA 412 (443)
Q Consensus 339 -----~~~ig~~~Q~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~ 412 (443)
...+++++|....... ...++.+.+.... ....+.++|..+|+. ...++++.+|||||||||+||+||+.
T Consensus 100 ~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~~---~~~~~~~~l~~lgl~-~~~~~~~~~LSgGekQRv~iAraL~~ 175 (538)
T 1yqt_A 100 KLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKAD---ETGKLEEVVKALELE-NVLEREIQHLSGGELQRVAIAAALLR 175 (538)
T ss_dssp HHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHHC---SSSCHHHHHHHTTCT-TTTTSBGGGCCHHHHHHHHHHHHHHS
T ss_pred HHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhhh---HHHHHHHHHHHcCCC-hhhhCChhhCCHHHHHHHHHHHHHhc
Confidence 1346788876421111 0114444443221 123467889999996 56789999999999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 413 APNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 413 ~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
+|++|||||||||||+.+++.+.+.|+++
T Consensus 176 ~P~lLlLDEPTs~LD~~~~~~l~~~L~~l 204 (538)
T 1yqt_A 176 NATFYFFDEPSSYLDIRQRLNAARAIRRL 204 (538)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999765
No 59
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.96 E-value=1.6e-30 Score=278.81 Aligned_cols=161 Identities=21% Similarity=0.274 Sum_probs=128.8
Q ss_pred eEEE--------eeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceE---------EEc-
Q psy208 276 ILQL--------SEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTR---------TVH- 337 (443)
Q Consensus 276 ~l~~--------~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i---------~~~- 337 (443)
+|++ +||+++|++...+|.++| +|.+|++++|+||||||||||+|+|+|+++|++|++ .+.
T Consensus 83 ~i~i~~l~~~~~~~ls~~yg~~~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G 161 (607)
T 3bk7_A 83 AISIVNLPEQLDEDCVHRYGVNAFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRG 161 (607)
T ss_dssp CCEEEEECTTGGGSEEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTT
T ss_pred eEEEecCCccccCCeEEEECCCCeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCC
Confidence 5788 999999964335899999 999999999999999999999999999999999985 111
Q ss_pred ------------CceEEEEeccCcccccc-cchhHHHHHHHhCCCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHH
Q psy208 338 ------------RNLKFGYFSQHHVDQLD-MNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRV 404 (443)
Q Consensus 338 ------------~~~~ig~~~Q~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl 404 (443)
....+++++|....... ...++.+++... .....+.++|..+|+. +..++++.+|||||||||
T Consensus 162 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~---~~~~~~~~~L~~lgL~-~~~~~~~~~LSGGekQRv 237 (607)
T 3bk7_A 162 NELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKV---DEVGKFEEVVKELELE-NVLDRELHQLSGGELQRV 237 (607)
T ss_dssp STHHHHHHHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHHHT---CCSSCHHHHHHHTTCT-TGGGSBGGGCCHHHHHHH
T ss_pred EehhhhhhhhhhhhcceEEeechhhhchhhccccHHHHhhhh---HHHHHHHHHHHHcCCC-chhCCChhhCCHHHHHHH
Confidence 12346777876321111 112555555421 1123467889999996 578899999999999999
Q ss_pred HHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 405 AFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 405 ~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
+||+||+.+|++|||||||||||+.++..+.+.|+++
T Consensus 238 aIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l 274 (607)
T 3bk7_A 238 AIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRL 274 (607)
T ss_dssp HHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999865
No 60
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.96 E-value=6.1e-29 Score=276.18 Aligned_cols=158 Identities=27% Similarity=0.392 Sum_probs=127.5
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHc-CCCCCCceEEEcCceEEEEeccCcccccc
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMG-IISPTAGTRTVHRNLKFGYFSQHHVDQLD 354 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G-~~~p~~G~i~~~~~~~ig~~~Q~~~~~l~ 354 (443)
.|...|++++|+ ++++|+|+||+|.+|++++|+||||||||||+|+|+| .+ .|. .......++|++|+.. .+.
T Consensus 435 ~L~~~~ls~~yg-~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~LagG~i---~g~-~~~~~~~~~~v~q~~~-~~~ 508 (986)
T 2iw3_A 435 DLCNCEFSLAYG-AKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQV---DGF-PTQEECRTVYVEHDID-GTH 508 (986)
T ss_dssp EEEEEEEEEEET-TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHHTCS---TTC-CCTTTSCEEETTCCCC-CCC
T ss_pred eeEEeeEEEEEC-CEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc---CCC-ccccceeEEEEccccc-ccc
Confidence 466669999995 5789999999999999999999999999999999995 22 121 0011234788888642 234
Q ss_pred cchhHHHHHHHhCCCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCCHHHHHHH
Q psy208 355 MNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEAL 434 (443)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l 434 (443)
...++.+++....... .+++..+|..+|+..+..++++++|||||||||+||++|+.+|++|||||||||||+.+++.|
T Consensus 509 ~~ltv~e~l~~~~~~~-~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l 587 (986)
T 2iw3_A 509 SDTSVLDFVFESGVGT-KEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWL 587 (986)
T ss_dssp TTSBHHHHHHTTCSSC-HHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHH
T ss_pred cCCcHHHHHHHhhcCH-HHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHH
Confidence 4567777665322122 667889999999976678899999999999999999999999999999999999999999999
Q ss_pred HHHHcc
Q psy208 435 GKAINK 440 (443)
Q Consensus 435 ~~~L~~ 440 (443)
.+.|.+
T Consensus 588 ~~~L~~ 593 (986)
T 2iw3_A 588 VNYLNT 593 (986)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 999875
No 61
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.95 E-value=3.9e-28 Score=260.13 Aligned_cols=159 Identities=23% Similarity=0.316 Sum_probs=119.6
Q ss_pred eeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcC---------------------
Q psy208 280 SEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR--------------------- 338 (443)
Q Consensus 280 ~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~--------------------- 338 (443)
+|++++|+.....+++++ .+.+|+++||+||||||||||||+|+|+++|++|+|....
T Consensus 81 ~~~~~~Y~~~~~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~~ 159 (608)
T 3j16_B 81 AHVTHRYSANSFKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKM 159 (608)
T ss_dssp TTEEEECSTTSCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHHHHH
T ss_pred CCeEEEECCCceeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhhhhHH
Confidence 367899975556777777 6899999999999999999999999999999999873110
Q ss_pred ---ceEEEEeccCccccc-----ccchhHHHHHHHhCCCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHh
Q psy208 339 ---NLKFGYFSQHHVDQL-----DMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMC 410 (443)
Q Consensus 339 ---~~~ig~~~Q~~~~~l-----~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al 410 (443)
.....+.+|.. ... ....++.+.+... .......+.+++..+|+. ...++++.+|||||||||+||+||
T Consensus 160 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~l~~~-~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgGe~Qrv~iAraL 236 (608)
T 3j16_B 160 LEDDIKAIIKPQYV-DNIPRAIKGPVQKVGELLKLR-MEKSPEDVKRYIKILQLE-NVLKRDIEKLSGGELQRFAIGMSC 236 (608)
T ss_dssp HHTSCCCEEECCCT-TTHHHHCSSSSSHHHHHHHHH-CCSCHHHHHHHHHHHTCT-GGGGSCTTTCCHHHHHHHHHHHHH
T ss_pred HHHhhhhhhchhhh-hhhhhhhcchhhHHHHHHhhh-hhhHHHHHHHHHHHcCCc-chhCCChHHCCHHHHHHHHHHHHH
Confidence 00111222211 000 0001222222221 223456788899999996 578999999999999999999999
Q ss_pred ccCCCeEEEeCCCCCCCHHHHHHHHHHHcccc
Q psy208 411 MAAPNFLVLDEPTNHLDIETIEALGKAINKYT 442 (443)
Q Consensus 411 ~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~~ 442 (443)
+.+|++|||||||++||+.++..+.+.|+++.
T Consensus 237 ~~~p~llllDEPts~LD~~~~~~l~~~l~~l~ 268 (608)
T 3j16_B 237 VQEADVYMFDEPSSYLDVKQRLNAAQIIRSLL 268 (608)
T ss_dssp HSCCSEEEEECTTTTCCHHHHHHHHHHHHGGG
T ss_pred HhCCCEEEEECcccCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998763
No 62
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.94 E-value=2.8e-27 Score=250.52 Aligned_cols=157 Identities=23% Similarity=0.246 Sum_probs=114.5
Q ss_pred eeeEEEeCCCCceeeeeeEEEe-CCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEE-----------EcC---------
Q psy208 280 SEVNFEYVPGKPILTNVCLGAT-LESRICIVGDNGAGKTTLLKIIMGIISPTAGTRT-----------VHR--------- 338 (443)
Q Consensus 280 ~~l~~~y~~~~~il~~vsl~i~-~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~-----------~~~--------- 338 (443)
++++.+|+.+ -|+-..|.+. +|+++||+||||||||||+|+|+|+++|++|+|. +.+
T Consensus 3 ~~~~~~~~~~--~f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~ 80 (538)
T 3ozx_A 3 GEVIHRYKVN--GFKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKE 80 (538)
T ss_dssp CCEEEESSTT--SCEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHHH
T ss_pred CCCceecCCC--ceeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHHH
Confidence 3577889644 3444445444 9999999999999999999999999999999872 111
Q ss_pred ----ceEEEEeccCccccc-ccchhHHHHHHHhCCCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccC
Q psy208 339 ----NLKFGYFSQHHVDQL-DMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAA 413 (443)
Q Consensus 339 ----~~~ig~~~Q~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~ 413 (443)
...+....|...... ....++.+.+..... ...+..++..+++. ...++++.+|||||||||+||+||+.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~---~~~~~~~l~~l~l~-~~~~~~~~~LSgGe~Qrv~iA~aL~~~ 156 (538)
T 3ozx_A 81 LYSNELKIVHKIQYVEYASKFLKGTVNEILTKIDE---RGKKDEVKELLNMT-NLWNKDANILSGGGLQRLLVAASLLRE 156 (538)
T ss_dssp HHTTCCCEEEECSCTTGGGTTCCSBHHHHHHHHCC---SSCHHHHHHHTTCG-GGTTSBGGGCCHHHHHHHHHHHHHHSC
T ss_pred HhhcccchhhccchhhhhhhhccCcHHHHhhcchh---HHHHHHHHHHcCCc-hhhcCChhhCCHHHHHHHHHHHHHHcC
Confidence 112333333221000 011233333332211 22456788889985 577899999999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHcccc
Q psy208 414 PNFLVLDEPTNHLDIETIEALGKAINKYT 442 (443)
Q Consensus 414 p~lLiLDEPTn~LD~~s~~~l~~~L~~~~ 442 (443)
|++||||||||+||+.++..+.+.|+++.
T Consensus 157 p~illlDEPts~LD~~~~~~l~~~l~~l~ 185 (538)
T 3ozx_A 157 ADVYIFDQPSSYLDVRERMNMAKAIRELL 185 (538)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHHHHHC
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHHh
Confidence 99999999999999999999999998763
No 63
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.93 E-value=1.7e-26 Score=251.25 Aligned_cols=153 Identities=18% Similarity=0.202 Sum_probs=99.5
Q ss_pred CCceeeeeeEEEeCCCEEEEECCCCCcHHHHH---------------------HHHHcCCCCCCceEE-------EcC--
Q psy208 289 GKPILTNVCLGATLESRICIVGDNGAGKTTLL---------------------KIIMGIISPTAGTRT-------VHR-- 338 (443)
Q Consensus 289 ~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLl---------------------k~l~G~~~p~~G~i~-------~~~-- 338 (443)
...+|+||||+|++|+++||+||||||||||+ +++.|+..|+.|.|. +..
T Consensus 30 ~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~ 109 (670)
T 3ux8_A 30 RAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKT 109 (670)
T ss_dssp CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC
T ss_pred CccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCch
Confidence 35699999999999999999999999999998 999999999966543 221
Q ss_pred -----ceEEEEeccCcccc-----------------cccchhHHHHHHHh--C--CCCCH----------HHHHHHHhcC
Q psy208 339 -----NLKFGYFSQHHVDQ-----------------LDMNLRCVQLLEAA--F--PGKPQ----------EEYRRQLGGF 382 (443)
Q Consensus 339 -----~~~ig~~~Q~~~~~-----------------l~~~~~~~~~~~~~--~--~~~~~----------~~~~~~L~~~ 382 (443)
...+||++|..... .....++.+++... . ..... .+...++..+
T Consensus 110 ~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 189 (670)
T 3ux8_A 110 TSRNPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGFLQNV 189 (670)
T ss_dssp -----CCBHHHHTTCC-------------------------CC--------------------------CHHHHHHHHHT
T ss_pred hhccchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHHHHc
Confidence 11234444432100 00111222222110 0 00000 0112347889
Q ss_pred CCChhhhhccCCCCCHHHHHHHHHHHHhccCCC--eEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 383 GVSGDLALQFVGSLSGGQKSRVAFARMCMAAPN--FLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 383 gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~--lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
|+.....++++.+|||||||||+|||||+.+|+ +|||||||+|||+.++..|.+.|+++
T Consensus 190 gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l 250 (670)
T 3ux8_A 190 GLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSM 250 (670)
T ss_dssp TCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHH
T ss_pred CCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHH
Confidence 987545789999999999999999999999998 99999999999999999999999765
No 64
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.89 E-value=2.6e-23 Score=213.08 Aligned_cols=47 Identities=23% Similarity=0.297 Sum_probs=45.0
Q ss_pred CCHHHHHHHHHHHHhccCC--CeEEEeCCCCCCCHHHHHHHHHHHcccc
Q psy208 396 LSGGQKSRVAFARMCMAAP--NFLVLDEPTNHLDIETIEALGKAINKYT 442 (443)
Q Consensus 396 LSgGekqRl~lA~al~~~p--~lLiLDEPTn~LD~~s~~~l~~~L~~~~ 442 (443)
|||||||||+||++|+.+| ++|||||||||||+.+++.|.+.|+++.
T Consensus 296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~ 344 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA 344 (415)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT
T ss_pred cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh
Confidence 6999999999999999999 9999999999999999999999998763
No 65
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.89 E-value=6.9e-27 Score=243.04 Aligned_cols=157 Identities=14% Similarity=0.127 Sum_probs=118.4
Q ss_pred CCeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCc-e-EEEcC--ceEEEEeccCc
Q psy208 274 PPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAG-T-RTVHR--NLKFGYFSQHH 349 (443)
Q Consensus 274 ~~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G-~-i~~~~--~~~ig~~~Q~~ 349 (443)
.++++++||++.|+ ++||++.+|++++|+||||||||||+|+|+|+++|++| + |.++. ...++|++|+.
T Consensus 116 ~~mi~~~nl~~~y~-------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~~~~~i~~vpq~~ 188 (460)
T 2npi_A 116 HTMKYIYNLHFMLE-------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLDPQQPIFTVPGCI 188 (460)
T ss_dssp CTHHHHHHHHHHHH-------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECCTTSCSSSCSSCC
T ss_pred cchhhhhhhhehhh-------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCCccCCeeeeccch
Confidence 46789999999884 69999999999999999999999999999999999999 8 88864 34588999875
Q ss_pred ccc-cccchhHHHHHH-HhC-CC-CCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHH--hccCCCe----EEE
Q psy208 350 VDQ-LDMNLRCVQLLE-AAF-PG-KPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARM--CMAAPNF----LVL 419 (443)
Q Consensus 350 ~~~-l~~~~~~~~~~~-~~~-~~-~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~a--l~~~p~l----LiL 419 (443)
... +....++.+++. ... .. .....+..++..+|+.. ..+ +.+|||||||||+||++ |+.+|++ |||
T Consensus 189 ~l~~~~~~~tv~eni~~~~~~~~~~~~~~~~~ll~~~gl~~-~~~--~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlL 265 (460)
T 2npi_A 189 SATPISDILDAQLPTWGQSLTSGATLLHNKQPMVKNFGLER-INE--NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIV 265 (460)
T ss_dssp EEEECCSCCCTTCTTCSCBCBSSCCSSCCBCCEECCCCSSS-GGG--CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEE
T ss_pred hhcccccccchhhhhcccccccCcchHHHHHHHHHHhCCCc-ccc--hhhhhHHHHHHHHHHHHHHhccCcccCcceEEE
Confidence 211 111122222220 000 00 11123445677788753 333 88999999999999999 9999999 999
Q ss_pred eC-CCCCCCHHHHHHHHHHHccc
Q psy208 420 DE-PTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 420 DE-PTn~LD~~s~~~l~~~L~~~ 441 (443)
|| ||++||+. .+.|.++++++
T Consensus 266 DEpPts~LD~~-~~~l~~l~~~~ 287 (460)
T 2npi_A 266 DTPSISQLDEN-LAELHHIIEKL 287 (460)
T ss_dssp ECCCGGGSCSS-CHHHHHHHHHT
T ss_pred eCCcccccChh-HHHHHHHHHHh
Confidence 99 99999999 77777777654
No 66
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.89 E-value=6.7e-26 Score=212.04 Aligned_cols=126 Identities=16% Similarity=0.165 Sum_probs=89.7
Q ss_pred CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEc--------CceEEEEeccCccccc-ccchhH
Q psy208 289 GKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVH--------RNLKFGYFSQHHVDQL-DMNLRC 359 (443)
Q Consensus 289 ~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~--------~~~~ig~~~Q~~~~~l-~~~~~~ 359 (443)
.+.+|+++ .+|++++|+||||||||||+|+|+|+ +|++|+|... ....+||++|++.+.+ ......
T Consensus 12 ~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~~~~~~~~~~~~~~ig~v~q~~~enl~~~~~~~ 86 (208)
T 3b85_A 12 QKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSRIILTRPAVEAGEKLGFLPGTLNEKIDPYLRPL 86 (208)
T ss_dssp HHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSEEEEEECSCCTTCCCCSSCC------CTTTHHH
T ss_pred HHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeeeeEEecCCchhhhcceEEecCCHHHHHHHHHHHH
Confidence 35688885 89999999999999999999999999 9999998431 1235889998763333 111111
Q ss_pred HHHHHHhCCCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHc
Q psy208 360 VQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAIN 439 (443)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~ 439 (443)
...+ ........+..++.. ++ ||||||+|||||+.+|++|||||||++ ++..+.+.|.
T Consensus 87 ~~~~---~~~~~~~~~~~~l~~-gl--------------Gq~qrv~lAraL~~~p~lllLDEPts~----~~~~l~~~l~ 144 (208)
T 3b85_A 87 HDAL---RDMVEPEVIPKLMEA-GI--------------VEVAPLAYMRGRTLNDAFVILDEAQNT----TPAQMKMFLT 144 (208)
T ss_dssp HHHH---TTTSCTTHHHHHHHT-TS--------------EEEEEGGGGTTCCBCSEEEEECSGGGC----CHHHHHHHHT
T ss_pred HHHH---HHhccHHHHHHHHHh-CC--------------chHHHHHHHHHHhcCCCEEEEeCCccc----cHHHHHHHHH
Confidence 1111 111122344555544 32 999999999999999999999999999 8888998887
Q ss_pred cc
Q psy208 440 KY 441 (443)
Q Consensus 440 ~~ 441 (443)
++
T Consensus 145 ~l 146 (208)
T 3b85_A 145 RL 146 (208)
T ss_dssp TB
T ss_pred Hh
Confidence 65
No 67
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.85 E-value=1.2e-22 Score=183.75 Aligned_cols=129 Identities=17% Similarity=0.205 Sum_probs=85.6
Q ss_pred eeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCceEEEEeccCcccccccchhHHHHHHHhCCCCCHHH
Q psy208 295 NVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEE 374 (443)
Q Consensus 295 ~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ig~~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~ 374 (443)
|+||+|++|++++|+||||||||||+|++.+- ...+......|+++|++.... ......+.+.. .
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~------~~~~~~d~~~g~~~~~~~~~~-~~~~~~~~~~~--------~ 65 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKP------TEVISSDFCRGLMSDDENDQT-VTGAAFDVLHY--------I 65 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSCG------GGEEEHHHHHHHHCSSTTCGG-GHHHHHHHHHH--------H
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHccC------CeEEccHHHHHHhcCcccchh-hHHHHHHHHHH--------H
Confidence 68999999999999999999999999986532 211222122355666543221 11111221110 1
Q ss_pred HHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCCHH----------------HHHHHHHHH
Q psy208 375 YRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIE----------------TIEALGKAI 438 (443)
Q Consensus 375 ~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD~~----------------s~~~l~~~L 438 (443)
... ....|... ........|+|||||++||++++.+|++|+|||||++||+. .+..+.+.|
T Consensus 66 ~~~-~~~~g~~~--~~~~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l 142 (171)
T 4gp7_A 66 VSK-RLQLGKLT--VVDATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSI 142 (171)
T ss_dssp HHH-HHHTTCCE--EEESCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHS
T ss_pred HHH-HHhCCCeE--EEECCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhh
Confidence 111 22234321 22344567999999999999999999999999999999999 558888876
Q ss_pred ccc
Q psy208 439 NKY 441 (443)
Q Consensus 439 ~~~ 441 (443)
.+.
T Consensus 143 ~~l 145 (171)
T 4gp7_A 143 KGL 145 (171)
T ss_dssp TTH
T ss_pred hhH
Confidence 653
No 68
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.85 E-value=1.5e-22 Score=214.27 Aligned_cols=142 Identities=13% Similarity=0.044 Sum_probs=100.6
Q ss_pred CeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCceEEEEeccCcccccc
Q psy208 275 PILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLD 354 (443)
Q Consensus 275 ~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ig~~~Q~~~~~l~ 354 (443)
+.++++++++.|++-..+| +..|.+|++++|+|+||||||||+++++|...|. |. ..+.|.+|++..
T Consensus 256 ~~~~~~~l~~g~~~ld~vL---~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~------~vi~~~~ee~~~--- 322 (525)
T 1tf7_A 256 QRSSNVRVSSGVVRLDEMC---GGGFFKDSIILATGATGTGKTLLVSRFVENACAN-KE------RAILFAYEESRA--- 322 (525)
T ss_dssp CCCCCCEECCSCHHHHHHT---TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TC------CEEEEESSSCHH---
T ss_pred cccccceeecChHHHHHHh---CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CC------CEEEEEEeCCHH---
Confidence 4567888887663201233 4589999999999999999999999999998885 53 124455665421
Q ss_pred cchhHHHHHHHhCCCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCCHH-----
Q psy208 355 MNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIE----- 429 (443)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD~~----- 429 (443)
....... .+ +....+ +..+|+. ...+.++..|||||+||+++|+++..+|++||+| ||++||..
T Consensus 323 ---~l~~~~~-~~-g~~~~~----~~~~g~~-~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~ 391 (525)
T 1tf7_A 323 ---QLLRNAY-SW-GMDFEE----MERQNLL-KIVCAYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNA 391 (525)
T ss_dssp ---HHHHHHH-TT-SCCHHH----HHHTTSE-EECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHH
T ss_pred ---HHHHHHH-Hc-CCCHHH----HHhCCCE-EEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHH
Confidence 1111111 11 222222 2234432 3456778899999999999999999999999999 99999999
Q ss_pred HHHHHHHHHcc
Q psy208 430 TIEALGKAINK 440 (443)
Q Consensus 430 s~~~l~~~L~~ 440 (443)
.++.+.+.++.
T Consensus 392 ~~~~i~~ll~~ 402 (525)
T 1tf7_A 392 FRQFVIGVTGY 402 (525)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88887777654
No 69
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.83 E-value=5.9e-24 Score=217.69 Aligned_cols=143 Identities=15% Similarity=0.095 Sum_probs=108.9
Q ss_pred CceeeeeeEEEeCCC--------------------EEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCce--EEEEecc
Q psy208 290 KPILTNVCLGATLES--------------------RICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNL--KFGYFSQ 347 (443)
Q Consensus 290 ~~il~~vsl~i~~Ge--------------------~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~--~ig~~~Q 347 (443)
+.+++++||+|++|+ ++||+||||||||||+|+|+|+++|++|+|.++... ..+|++|
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q 115 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYK 115 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEE
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEecc
Confidence 468999999999999 999999999999999999999999999998765421 1267887
Q ss_pred CcccccccchhHHHHHHHhCCCCCHHHHHHHHhcCCCChhhhhccCCCCCHH--HHHHHHHHHHhcc----------CCC
Q psy208 348 HHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGG--QKSRVAFARMCMA----------APN 415 (443)
Q Consensus 348 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgG--ekqRl~lA~al~~----------~p~ 415 (443)
++. ....++.+...... ....+.+++..+++.. . +..+. ||+| |+||+.||++++. +|+
T Consensus 116 ~~~---~~~ltv~D~~g~~~---~~~~~~~~L~~~~L~~-~-~~~~~-lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpd 186 (413)
T 1tq4_A 116 HPN---IPNVVFWDLPGIGS---TNFPPDTYLEKMKFYE-Y-DFFII-ISATRFKKNDIDIAKAISMMKKEFYFVRTKVD 186 (413)
T ss_dssp CSS---CTTEEEEECCCGGG---SSCCHHHHHHHTTGGG-C-SEEEE-EESSCCCHHHHHHHHHHHHTTCEEEEEECCHH
T ss_pred ccc---cCCeeehHhhcccc---hHHHHHHHHHHcCCCc-c-CCeEE-eCCCCccHHHHHHHHHHHhcCCCeEEEEecCc
Confidence 642 11112111110001 1224567888888753 2 33333 9999 9999999999999 999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 416 FLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 416 lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
+|||||||++||+.+++.+.+.|+++
T Consensus 187 lllLDEPtsgLD~~~~~~l~~~l~~l 212 (413)
T 1tq4_A 187 SDITNEADGEPQTFDKEKVLQDIRLN 212 (413)
T ss_dssp HHHHHHHTTCCTTCCHHHHHHHHHHH
T ss_pred ccccCcccccCCHHHHHHHHHHHHHH
Confidence 99999999999999999998888765
No 70
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.83 E-value=4.3e-22 Score=181.70 Aligned_cols=114 Identities=15% Similarity=0.166 Sum_probs=82.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCC-CceEEEc-----CceEEEEeccCcccccccchhHHHHHHHhCCCCCHHHHHHH
Q psy208 305 RICIVGDNGAGKTTLLKIIMGIISPT-AGTRTVH-----RNLKFGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQ 378 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~~p~-~G~i~~~-----~~~~ig~~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (443)
+++|+||||||||||+|+|+|++... .|..... ....+||++|+.. . .. . +
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~~g~~~~~~~~~~~~~~ig~~~~~~~-~-~~--~-------------------~ 58 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTE-G-KK--K-------------------I 58 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETT-C-CE--E-------------------E
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcCCCEEhhhhccccccceeEEEeecCc-H-HH--H-------------------H
Confidence 68999999999999999999998522 2322110 1234677777531 0 00 0 0
Q ss_pred HhcCCCCh-hhhhccCCCCCHHHHHHHHHHHH-----hccCCCeEEEeC--CCCCCCHHHHHHHHHHHccc
Q psy208 379 LGGFGVSG-DLALQFVGSLSGGQKSRVAFARM-----CMAAPNFLVLDE--PTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 379 L~~~gl~~-~~~~~~~~~LSgGekqRl~lA~a-----l~~~p~lLiLDE--PTn~LD~~s~~~l~~~L~~~ 441 (443)
+..+++.. ...++++.+||||||||++||++ ++.+|++||||| ||++||+.+.+.+.+.|.++
T Consensus 59 ~~~~~~~~~~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~~ 129 (178)
T 1ye8_A 59 FSSKFFTSKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDP 129 (178)
T ss_dssp EEETTCCCSSEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTCT
T ss_pred HHhhcCCccccccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhcC
Confidence 11122211 24567888999999999999996 999999999999 99999999999999998763
No 71
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.81 E-value=2.2e-23 Score=206.51 Aligned_cols=139 Identities=17% Similarity=0.175 Sum_probs=109.1
Q ss_pred CeEEEeeeEEEeCCCCceeeeeeEE-----------------------EeCCCEEEEECCCCCcHHHHHHHHHcCCCCCC
Q psy208 275 PILQLSEVNFEYVPGKPILTNVCLG-----------------------ATLESRICIVGDNGAGKTTLLKIIMGIISPTA 331 (443)
Q Consensus 275 ~~l~~~~l~~~y~~~~~il~~vsl~-----------------------i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~ 331 (443)
..|+++||++.|. ++++++++. +.+|+++||+||||||||||+++|+|+++|+.
T Consensus 42 ~~i~~~~v~~~y~---p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~ 118 (312)
T 3aez_A 42 EQIDLLEVEEVYL---PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLARWD 118 (312)
T ss_dssp CCCCHHHHHHTHH---HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHHTST
T ss_pred CeEEeeehhhhhh---hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhhccccC
Confidence 3589999999994 577777764 89999999999999999999999999999987
Q ss_pred ceEEEcCceEEEEeccCcccccccchhHHHHHHHh----CC-CCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHH
Q psy208 332 GTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEAA----FP-GKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAF 406 (443)
Q Consensus 332 G~i~~~~~~~ig~~~Q~~~~~l~~~~~~~~~~~~~----~~-~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~l 406 (443)
|. ..++|++|+.. +... ++.+++... .+ ......+.+.|..++ . ...+.++..|||||+||+++
T Consensus 119 G~------~~v~~v~qd~~--~~~~-t~~e~~~~~~~~g~~~~~d~~~~~~~L~~l~-~-~~~~~~~~~lS~G~~qRv~~ 187 (312)
T 3aez_A 119 HH------PRVDLVTTDGF--LYPN-AELQRRNLMHRKGFPESYNRRALMRFVTSVK-S-GSDYACAPVYSHLHYDIIPG 187 (312)
T ss_dssp TC------CCEEEEEGGGG--BCCH-HHHHHTTCTTCTTSGGGBCHHHHHHHHHHHH-T-TCSCEEEEEEETTTTEEEEE
T ss_pred CC------CeEEEEecCcc--CCcc-cHHHHHHHHHhcCCChHHHHHHHHHHHHHhC-C-CcccCCcccCChhhhhhhhh
Confidence 74 35899999853 3333 555554211 11 112355677777776 3 23356788999999999999
Q ss_pred HHHhccCCCeEEEeCCCCCCC
Q psy208 407 ARMCMAAPNFLVLDEPTNHLD 427 (443)
Q Consensus 407 A~al~~~p~lLiLDEPTn~LD 427 (443)
|++++.+|+|||||||+..+|
T Consensus 188 a~al~~~p~ilIlDep~~~~d 208 (312)
T 3aez_A 188 AEQVVRHPDILILEGLNVLQT 208 (312)
T ss_dssp EEEEECSCSEEEEECTTTTCC
T ss_pred HHHhccCCCEEEECCccccCC
Confidence 999999999999999999986
No 72
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.81 E-value=1.3e-20 Score=190.62 Aligned_cols=53 Identities=19% Similarity=0.299 Sum_probs=49.4
Q ss_pred hccCCCCCHHHHHHHHHHHHhc------cCCCeEEEeCCCCCCCHHHHHHHHHHHcccc
Q psy208 390 LQFVGSLSGGQKSRVAFARMCM------AAPNFLVLDEPTNHLDIETIEALGKAINKYT 442 (443)
Q Consensus 390 ~~~~~~LSgGekqRl~lA~al~------~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~~ 442 (443)
++++.+|||||||||+||+||+ .+|++|||||||+|||+.+++.+.+.|.++.
T Consensus 274 ~~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~ 332 (365)
T 3qf7_A 274 ERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELE 332 (365)
T ss_dssp EEEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGG
T ss_pred CCCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHH
Confidence 4788999999999999999999 7999999999999999999999999998753
No 73
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.78 E-value=9.1e-23 Score=200.95 Aligned_cols=132 Identities=13% Similarity=0.176 Sum_probs=97.9
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCceEEEEeccCccccccc
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDM 355 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ig~~~Q~~~~~l~~ 355 (443)
.|+++||+|+|+ .++|+++||+|++|++++|+||||||||||+++|+|++ +|+| ++|++|.+.. +.
T Consensus 101 ~i~~~~vs~~y~--~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I-------~~~v~q~~~l-f~- 166 (305)
T 2v9p_A 101 FFNYQNIELITF--INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSV-------LSFANHKSHF-WL- 166 (305)
T ss_dssp HHHHTTCCHHHH--HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEE-------ECGGGTTSGG-GG-
T ss_pred eEEEEEEEEEcC--hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceE-------EEEecCcccc-cc-
Confidence 488999999995 67999999999999999999999999999999999998 8988 3466776421 11
Q ss_pred chhHHH-HHHHhCCCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCCHHHHHHH
Q psy208 356 NLRCVQ-LLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEAL 434 (443)
Q Consensus 356 ~~~~~~-~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l 434 (443)
.++.+ ++.. .+... ..+...+..+ +. ...+ +..|||||||| |||++.+|+||| |++||+.+...+
T Consensus 167 -~ti~~~ni~~-~~~~~-~~~~~~i~~~-L~-~gld--g~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~~~~i 232 (305)
T 2v9p_A 167 -ASLADTRAAL-VDDAT-HACWRYFDTY-LR-NALD--GYPVSIDRKHK---AAVQIKAPPLLV----TSNIDVQAEDRY 232 (305)
T ss_dssp -GGGTTCSCEE-EEEEC-HHHHHHHHHT-TT-GGGG--TCCEECCCSSC---CCCEECCCCEEE----EESSCSTTCGGG
T ss_pred -ccHHHHhhcc-Ccccc-HHHHHHHHHH-hH-ccCC--ccCcCHHHHHH---HHHHhCCCCEEE----ECCCCHHHHHHH
Confidence 12211 1110 01111 1344555553 32 2223 77999999999 999999999999 999999887766
Q ss_pred H
Q psy208 435 G 435 (443)
Q Consensus 435 ~ 435 (443)
.
T Consensus 233 ~ 233 (305)
T 2v9p_A 233 L 233 (305)
T ss_dssp G
T ss_pred H
Confidence 4
No 74
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.78 E-value=4.6e-19 Score=176.17 Aligned_cols=53 Identities=30% Similarity=0.355 Sum_probs=48.5
Q ss_pred hhccCCCCCHHHHHHHHHHHHhc----cCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 389 ALQFVGSLSGGQKSRVAFARMCM----AAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 389 ~~~~~~~LSgGekqRl~lA~al~----~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
.+.++..||||||||++||++|+ .+|++|||||||++||+..++.|.+.|.++
T Consensus 213 ~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~ 269 (322)
T 1e69_A 213 RDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKEN 269 (322)
T ss_dssp CCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHH
T ss_pred ccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh
Confidence 45678899999999999999996 689999999999999999999999998765
No 75
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.77 E-value=1.3e-21 Score=183.86 Aligned_cols=141 Identities=16% Similarity=0.140 Sum_probs=88.6
Q ss_pred CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-----------eEEEEeccCcccccccchh
Q psy208 290 KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-----------LKFGYFSQHHVDQLDMNLR 358 (443)
Q Consensus 290 ~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~ig~~~Q~~~~~l~~~~~ 358 (443)
..-|+|+||+|.+|++++|+||||||||||+++|+|++ | |.|.++.. ..++|++|++.. + ...+
T Consensus 10 ~~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~g~~~~~~~~~~~~~~~i~~~~~~~~~-~-~~~~ 84 (218)
T 1z6g_A 10 HSSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYFSVSCTTRKKREKEKEGVDYYFIDKTI-F-EDKL 84 (218)
T ss_dssp ------------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEECCCEECSCCCSSCCBTTTBEECCHHH-H-HHHH
T ss_pred cccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEEeecccCCCCCcccccCCeEEECCHHH-H-HHhh
Confidence 35799999999999999999999999999999999998 6 88876211 235677776421 1 1100
Q ss_pred HH-HHH-----HHhCCCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHH-----HHHhccCCCeEEEeCCCCCCC
Q psy208 359 CV-QLL-----EAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAF-----ARMCMAAPNFLVLDEPTNHLD 427 (443)
Q Consensus 359 ~~-~~~-----~~~~~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~l-----A~al~~~p~lLiLDEPTn~LD 427 (443)
.. +.+ .....+.....+.+++...... .. ..+|||||+||++| +++++.+|++++|||||+++|
T Consensus 85 ~~~~~l~~~~~~~~~~g~~~~~i~~~l~~~~~~--il---~~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d 159 (218)
T 1z6g_A 85 KNEDFLEYDNYANNFYGTLKSEYDKAKEQNKIC--LF---EMNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRN 159 (218)
T ss_dssp HTTCEEEEEEETTEEEEEEHHHHHHHHHTTCEE--EE---EECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTC
T ss_pred hccchhhhhhcccccCCCcHHHHHHHHhCCCcE--EE---EecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcC
Confidence 00 000 0000011234456666653321 11 15789999999999 899999999999999999999
Q ss_pred HHHHHHHHHHHcc
Q psy208 428 IETIEALGKAINK 440 (443)
Q Consensus 428 ~~s~~~l~~~L~~ 440 (443)
..+.+.+.+.|..
T Consensus 160 ~~~~~~i~~~l~~ 172 (218)
T 1z6g_A 160 TENQEQIQKRMEQ 172 (218)
T ss_dssp CCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 9888888877653
No 76
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.75 E-value=2.6e-20 Score=183.68 Aligned_cols=129 Identities=20% Similarity=0.171 Sum_probs=98.7
Q ss_pred eeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-----------------eEEEEeccCccccccc
Q psy208 293 LTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-----------------LKFGYFSQHHVDQLDM 355 (443)
Q Consensus 293 l~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------------~~ig~~~Q~~~~~l~~ 355 (443)
+.++||++.+|++++|+||||||||||+++|+|+++|++|+|.+... ..++|++|++. .+++
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~-~~~~ 168 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGD-KAKA 168 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC---CCCH
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCC-ccCH
Confidence 35678899999999999999999999999999999999999987431 14899999753 1455
Q ss_pred chhHHHHHHHh-CCCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCC--eEEEeCCCCCCCHHHH
Q psy208 356 NLRCVQLLEAA-FPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPN--FLVLDEPTNHLDIETI 431 (443)
Q Consensus 356 ~~~~~~~~~~~-~~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~--lLiLDEPTn~LD~~s~ 431 (443)
..++.+++... ..... ..++..+|+. ...++++.+|| |||++||++++.+|+ +|+|| ||++||+..+
T Consensus 169 ~~~v~e~l~~~~~~~~d----~~lldt~gl~-~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-ptsglD~~~~ 238 (302)
T 3b9q_A 169 ATVLSKAVKRGKEEGYD----VVLCDTSGRL-HTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQ 238 (302)
T ss_dssp HHHHHHHHHHHHHTTCS----EEEECCCCCS-SCCHHHHHHHH---HHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHHH
T ss_pred HHHHHHHHHHHHHcCCc----chHHhcCCCC-cchhHHHHHHH---HHHHHHHHhhccCCCeeEEEEe-CCCCcCHHHH
Confidence 55666665421 11111 1245567765 34567788999 999999999999999 99999 9999999865
No 77
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.73 E-value=4.8e-20 Score=178.99 Aligned_cols=123 Identities=14% Similarity=0.167 Sum_probs=77.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcC--------ceEEEEeccCcccccccchhHHHHHHHh--C-CCCCHH
Q psy208 305 RICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR--------NLKFGYFSQHHVDQLDMNLRCVQLLEAA--F-PGKPQE 373 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~--------~~~ig~~~Q~~~~~l~~~~~~~~~~~~~--~-~~~~~~ 373 (443)
.++|+||||||||||+|+|+|+..|++|+|.+.+ ...++|++|++. +....++.+++... . .....+
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~--~~~~ltv~d~~~~g~~~~~~~~~~ 81 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGG--VKMKLTVIDTPGFGDQINNENCWE 81 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC------CCEEEEECCCC--CCSBCTTCSH
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCC--CcCCceEEechhhhhhcccHHHHH
Confidence 4899999999999999999999999999987643 246999999753 22233332222110 0 111122
Q ss_pred HHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHH
Q psy208 374 EYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKA 437 (443)
Q Consensus 374 ~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~ 437 (443)
.+..++. ....+..+.+|||||+||+++||+++. +++|||||.+||+...+.+..+
T Consensus 82 ~i~~~~~-----~~~~~~~~~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD~~~l~~L 137 (270)
T 3sop_A 82 PIEKYIN-----EQYEKFLKEEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLDLEFMKHL 137 (270)
T ss_dssp HHHHHHH-----HHHHHHHHHHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHHHHHHHHH
T ss_pred HHHHHHH-----HHHHhhhHHhcCcccchhhhhheeeee---eEEEecCCCcCCHHHHHHHHHH
Confidence 3333333 244566778999999999999999886 9999999999999986655443
No 78
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.72 E-value=1.7e-19 Score=181.50 Aligned_cols=129 Identities=20% Similarity=0.178 Sum_probs=98.6
Q ss_pred eeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-----------------eEEEEeccCcccccccc
Q psy208 294 TNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-----------------LKFGYFSQHHVDQLDMN 356 (443)
Q Consensus 294 ~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------------~~ig~~~Q~~~~~l~~~ 356 (443)
.++||++.+|++++|+||||||||||+++|+|+++|++|+|.+... ..++|++|++. .+++.
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~-~~~p~ 226 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGD-KAKAA 226 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSS-SCCHH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEeccc-ccChh
Confidence 3578889999999999999999999999999999999999977421 24899999752 14455
Q ss_pred hhHHHHHHHhC-CCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCC--eEEEeCCCCCCCHHHHH
Q psy208 357 LRCVQLLEAAF-PGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPN--FLVLDEPTNHLDIETIE 432 (443)
Q Consensus 357 ~~~~~~~~~~~-~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~--lLiLDEPTn~LD~~s~~ 432 (443)
.++.+++.... .... ..++..+|+. ...++++.+|| +||++||++++.+|+ +|+|| ||++||+..+.
T Consensus 227 ~tv~e~l~~~~~~~~d----~~lldt~Gl~-~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pttglD~~~~~ 296 (359)
T 2og2_A 227 TVLSKAVKRGKEEGYD----VVLCDTSGRL-HTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA 296 (359)
T ss_dssp HHHHHHHHHHHHTTCS----EEEEECCCCS-SCCHHHHHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHHH
T ss_pred hhHHHHHHHHHhCCCH----HHHHHhcCCC-hhhhhHHHHHH---HHHHHHHHHHhcCCCceEEEEc-CCCCCCHHHHH
Confidence 56666654211 1111 1235566764 34567788899 999999999999999 99999 99999998653
No 79
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.72 E-value=5.5e-19 Score=176.35 Aligned_cols=93 Identities=19% Similarity=0.287 Sum_probs=73.8
Q ss_pred ceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCceEEEEeccCcccccccchhHHHHHHHhCCCC
Q psy208 291 PILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEAAFPGK 370 (443)
Q Consensus 291 ~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ig~~~Q~~~~~l~~~~~~~~~~~~~~~~~ 370 (443)
++++++||.|.+|+.++|+||||||||||+++|+|+++|++|.|.+.+...+. +++.. .
T Consensus 159 ~~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~-~~~~~-~------------------- 217 (330)
T 2pt7_A 159 QAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIV-FKHHK-N------------------- 217 (330)
T ss_dssp HHHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCC-CSSCS-S-------------------
T ss_pred HHHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccc-cccch-h-------------------
Confidence 48899999999999999999999999999999999999999999876532110 00000 0
Q ss_pred CHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCC
Q psy208 371 PQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTN 424 (443)
Q Consensus 371 ~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn 424 (443)
.+++- .. |||+||++||++|..+|++|||||||+
T Consensus 218 ----------~i~~~--------~g--gg~~~r~~la~aL~~~p~ilildE~~~ 251 (330)
T 2pt7_A 218 ----------YTQLF--------FG--GNITSADCLKSCLRMRPDRIILGELRS 251 (330)
T ss_dssp ----------EEEEE--------CB--TTBCHHHHHHHHTTSCCSEEEECCCCS
T ss_pred ----------EEEEE--------eC--CChhHHHHHHHHhhhCCCEEEEcCCCh
Confidence 00000 00 899999999999999999999999998
No 80
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.69 E-value=2.9e-17 Score=164.28 Aligned_cols=53 Identities=32% Similarity=0.431 Sum_probs=47.9
Q ss_pred hhccCCCCCHHHHH------HHHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 389 ALQFVGSLSGGQKS------RVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 389 ~~~~~~~LSgGekq------Rl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
.++++..||||||| |+++|++++.+|++|||||||+|||+.++..+.+.|.++
T Consensus 242 ~~~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~ 300 (339)
T 3qkt_A 242 KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERY 300 (339)
T ss_dssp EEECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHT
T ss_pred CcCChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHH
Confidence 35688999999999 678888899999999999999999999999999998765
No 81
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.68 E-value=1.7e-18 Score=159.27 Aligned_cols=114 Identities=18% Similarity=0.233 Sum_probs=84.1
Q ss_pred CCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcC---------ceEEEEeccCcccccccchhHHHHHHHhCCCCCHH
Q psy208 303 ESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR---------NLKFGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQE 373 (443)
Q Consensus 303 Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~---------~~~ig~~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~ 373 (443)
|++++|+||||||||||+++|+|+++ ++| |.+++ ...+||++|+.... ..
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~~~~~~~ig~~~~~~~g~----~~--------------- 59 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEVRQGGRRIGFDVVTLSGT----RG--------------- 59 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEEETTSSEEEEEEEETTSC----EE---------------
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchhHhhhceEEEEEEecccc----ee---------------
Confidence 78999999999999999999999998 888 65432 23567777753110 00
Q ss_pred HHHHHHhcCCCCh------hhhhccCCCCCHHHHHHHH-HHH---HhccCCCeEEEeC--CCCCCCHHHHHHHHHHHccc
Q psy208 374 EYRRQLGGFGVSG------DLALQFVGSLSGGQKSRVA-FAR---MCMAAPNFLVLDE--PTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 374 ~~~~~L~~~gl~~------~~~~~~~~~LSgGekqRl~-lA~---al~~~p~lLiLDE--PTn~LD~~s~~~l~~~L~~~ 441 (443)
.++.+++.. ....++...+|+|||+++. +++ |++.+|++||||| ||+++|....+.|.++|..+
T Consensus 60 ----~l~~~~~~~~~~~~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~~ 135 (189)
T 2i3b_A 60 ----PLSRVGLEPPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLSTP 135 (189)
T ss_dssp ----EEEECCCCCCSSSCCEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHHCS
T ss_pred ----hhhcccccCCccccccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHhCC
Confidence 111222211 1234455679999999884 444 5789999999999 99999999999999999876
No 82
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.68 E-value=9e-18 Score=173.50 Aligned_cols=146 Identities=13% Similarity=0.123 Sum_probs=107.5
Q ss_pred CeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc---------------
Q psy208 275 PILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN--------------- 339 (443)
Q Consensus 275 ~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~--------------- 339 (443)
++++++++++.|+.+..+|+++ |+|.+|++++|+||||||||||+++|+|+.+|++|.|.+.+.
T Consensus 130 ~~l~~~~v~~~~~tg~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~~~ 208 (438)
T 2dpy_A 130 NPLQRTPIEHVLDTGVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILGP 208 (438)
T ss_dssp CTTTSCCCCSBCCCSCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTTHH
T ss_pred CceEEeccceecCCCceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhccc
Confidence 4689999999996456799999 999999999999999999999999999999999999877542
Q ss_pred ----eEEEEeccCcccccccchhHHHHHHHhCCCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCC
Q psy208 340 ----LKFGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPN 415 (443)
Q Consensus 340 ----~~ig~~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~ 415 (443)
..++|++|+.. .+....++.++.... .++....+-.-...-..+..||+|| ||++|| +.+|+
T Consensus 209 ~~l~r~i~~v~q~~~-~~~~~~~v~~~~~~~---------ae~~~~~~~~v~~~ld~l~~lS~g~-qrvslA---l~~p~ 274 (438)
T 2dpy_A 209 DGRARSVVIAAPADV-SPLLRMQGAAYATRI---------AEDFRDRGQHVLLIMDSLTRYAMAQ-REIALA---IGEPP 274 (438)
T ss_dssp HHHHTEEEEEECTTS-CHHHHHHHHHHHHHH---------HHHHHTTTCEEEEEEECHHHHHHHH-HHHHHH---TTCCC
T ss_pred cccCceEEEEECCCC-CHHHHHHHHHHHHHH---------HHHHHhCCCCHHHHHHhHHHHHHHH-HHHHHH---hCCCc
Confidence 24789998532 223333443333210 0111111100001112366799999 999999 88888
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 416 FLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 416 lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
+ |++||+.+...+.+.|.+.
T Consensus 275 ~------t~glD~~~~~~l~~ll~r~ 294 (438)
T 2dpy_A 275 A------TKGYPPSVFAKLPALVERA 294 (438)
T ss_dssp C------SSSCCTTHHHHHHHHHTTC
T ss_pred c------cccCCHHHHHHHHHHHHHH
Confidence 8 9999999999999998765
No 83
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.68 E-value=9.2e-18 Score=154.84 Aligned_cols=161 Identities=16% Similarity=0.157 Sum_probs=96.5
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCC-----CCCCceEEEcCce----EEEEec
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGII-----SPTAGTRTVHRNL----KFGYFS 346 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~-----~p~~G~i~~~~~~----~ig~~~ 346 (443)
+|+++|++|.|+ .+++++ |.+.+|.+++|+|+||||||||++.|+|.. .|+.|++...... .+.+++
T Consensus 3 ~l~~~~~~~~~~--~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~D 78 (210)
T 1pui_A 3 NLNYQQTHFVMS--APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVD 78 (210)
T ss_dssp --------CEEE--ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEE
T ss_pred chhhhhhhheee--cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEEE
Confidence 588999999995 367887 889999999999999999999999999998 7888876431100 111111
Q ss_pred cCcccc---cccc-----hhHH-HHHHH--h----------CCCCC--HHHHHHHHhcCCCChhhhhccCCCCCHHHHHH
Q psy208 347 QHHVDQ---LDMN-----LRCV-QLLEA--A----------FPGKP--QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSR 403 (443)
Q Consensus 347 Q~~~~~---l~~~-----~~~~-~~~~~--~----------~~~~~--~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqR 403 (443)
- +... .... .... ..+.. . ..... ...+..++...++..-....++..+|+||+||
T Consensus 79 t-~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~s~~~~~~ 157 (210)
T 1pui_A 79 L-PGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLASGARKA 157 (210)
T ss_dssp C-CCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCHHHHHH
T ss_pred C-cCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecccCCCchhHHH
Confidence 0 0000 0000 0011 11110 0 00111 22455566666765333456778899999999
Q ss_pred -HHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 404 -VAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 404 -l~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
+..+++++.+|.++++||||+++|..+++.+.+.|.++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~ 196 (210)
T 1pui_A 158 QLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTW 196 (210)
T ss_dssp HHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHH
Confidence 89999999999999999999999999999999888654
No 84
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.67 E-value=4.6e-17 Score=183.41 Aligned_cols=134 Identities=18% Similarity=0.259 Sum_probs=89.9
Q ss_pred CCeEEEee-----eEEEeCCCCceeeeeeEEEeC-------CCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCceE
Q psy208 274 PPILQLSE-----VNFEYVPGKPILTNVCLGATL-------ESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLK 341 (443)
Q Consensus 274 ~~~l~~~~-----l~~~y~~~~~il~~vsl~i~~-------Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ 341 (443)
.++|+++| |++.|.++..+++|++|++.+ |++++|+||||||||||||+| |++.+- ..
T Consensus 748 ~~~l~i~~~rHP~l~~~~~~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~~---------aq 817 (1022)
T 2o8b_B 748 PPFLELKGSRHPCITKTFFGDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAVM---------AQ 817 (1022)
T ss_dssp CCCEEEEEECCCC------CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHHH---------HT
T ss_pred CceEEEEeccccEEEEEecCCceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHHH---------hh
Confidence 45799999 999995456899999999987 999999999999999999999 987652 13
Q ss_pred EE-EeccCcccccccchhHHHHHHHhCCCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEe
Q psy208 342 FG-YFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLD 420 (443)
Q Consensus 342 ig-~~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLD 420 (443)
+| |+||+.. .+ ++.+. ++..+|.. +...+..+++|+++++ +++|++++.+|.++|||
T Consensus 818 iG~~Vpq~~~-~l----~v~d~---------------I~~rig~~-d~~~~~~stf~~em~~-~a~al~la~~~sLlLLD 875 (1022)
T 2o8b_B 818 MGCYVPAEVC-RL----TPIDR---------------VFTRLGAS-DRIMSGESTFFVELSE-TASILMHATAHSLVLVD 875 (1022)
T ss_dssp TTCCEESSEE-EE----CCCSB---------------EEEECC----------CHHHHHHHH-HHHHHHHCCTTCEEEEE
T ss_pred eeEEeccCcC-CC----CHHHH---------------HHHHcCCH-HHHhhchhhhHHHHHH-HHHHHHhCCCCcEEEEE
Confidence 45 7888642 11 11110 12234443 2333455678887775 99999999999999999
Q ss_pred CCCCCCCHHHH-HHHHHHHc
Q psy208 421 EPTNHLDIETI-EALGKAIN 439 (443)
Q Consensus 421 EPTn~LD~~s~-~~l~~~L~ 439 (443)
|||+|+|+... ..+...|.
T Consensus 876 Ep~~Gtd~~dg~~~~~~il~ 895 (1022)
T 2o8b_B 876 ELGRGTATFDGTAIANAVVK 895 (1022)
T ss_dssp CTTTTSCHHHHHHHHHHHHH
T ss_pred CCCCCCChHHHHHHHHHHHH
Confidence 99999998874 33444443
No 85
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.67 E-value=4.3e-18 Score=162.38 Aligned_cols=131 Identities=18% Similarity=0.108 Sum_probs=81.4
Q ss_pred CCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEc-CceEEEEeccCcccccccchhHHHHHHHh
Q psy208 288 PGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVH-RNLKFGYFSQHHVDQLDMNLRCVQLLEAA 366 (443)
Q Consensus 288 ~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~-~~~~ig~~~Q~~~~~l~~~~~~~~~~~~~ 366 (443)
+++++|+|+||++.+|+++||+||||||||||+++|+|++ |.+.+. ....++|++|+. +....+..+.....
T Consensus 10 ~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~~~~~~i~~v~~d~---~~~~l~~~~~~~~~ 82 (245)
T 2jeo_A 10 GVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVEQRQRKVVILSQDR---FYKVLTAEQKAKAL 82 (245)
T ss_dssp -------------CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSCGGGCSEEEEEGGG---GBCCCCHHHHHHHH
T ss_pred CCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhcccccCCceEEEeCCc---CccccCHhHhhhhh
Confidence 3567999999999999999999999999999999999976 433221 123588999874 22233444433221
Q ss_pred CC--C------CCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCCHH
Q psy208 367 FP--G------KPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIE 429 (443)
Q Consensus 367 ~~--~------~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD~~ 429 (443)
.. . .....+.+.|..+. .....++..||+||+||+.+ ++++.+|+++|||||....+..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~L~~l~---~~~~~~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~ 149 (245)
T 2jeo_A 83 KGQYNFDHPDAFDNDLMHRTLKNIV---EGKTVEVPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQE 149 (245)
T ss_dssp TTCCCTTSGGGBCHHHHHHHHHHHH---TTCCEEECCEETTTTEECSS-CEEECCCSEEEEECTTTTTSHH
T ss_pred ccCCCCCCcccccHHHHHHHHHHHH---CCCCeecccccccccCccCc-eEEecCCCEEEEeCccccccHH
Confidence 11 1 12233455555431 23456788999999999988 5888899999999998887754
No 86
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.66 E-value=9.3e-18 Score=162.07 Aligned_cols=114 Identities=19% Similarity=0.296 Sum_probs=83.9
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCC-CceEEEcCceEEEEeccCcccccc
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPT-AGTRTVHRNLKFGYFSQHHVDQLD 354 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~-~G~i~~~~~~~ig~~~Q~~~~~l~ 354 (443)
+++++++++. ++|+++| +.+|++++|+||||||||||+++|+|+++|+ +|+|.+.+. .++|++|......
T Consensus 5 ~~~l~~l~~~-----~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~-~i~~~~~~~~~~v- 75 (261)
T 2eyu_A 5 IPEFKKLGLP-----DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIED-PIEYVFKHKKSIV- 75 (261)
T ss_dssp -CCGGGSSCC-----THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEES-SCCSCCCCSSSEE-
T ss_pred CCChHHCCCH-----HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCC-cceeecCCcceee-
Confidence 4567777742 5899999 8999999999999999999999999999998 999876432 2345544321100
Q ss_pred cchhHHHHHHHhCCCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCCHHHHHHH
Q psy208 355 MNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEAL 434 (443)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l 434 (443)
.. ..+|+.. ..| |++||++|..+|++||||||| |+++...+
T Consensus 76 -------------~q----------~~~gl~~-------~~l------~~~la~aL~~~p~illlDEp~---D~~~~~~~ 116 (261)
T 2eyu_A 76 -------------NQ----------REVGEDT-------KSF------ADALRAALREDPDVIFVGEMR---DLETVETA 116 (261)
T ss_dssp -------------EE----------EEBTTTB-------SCH------HHHHHHHHHHCCSEEEESCCC---SHHHHHHH
T ss_pred -------------eH----------HHhCCCH-------HHH------HHHHHHHHhhCCCEEEeCCCC---CHHHHHHH
Confidence 00 0233321 222 899999999999999999999 99987765
Q ss_pred HHH
Q psy208 435 GKA 437 (443)
Q Consensus 435 ~~~ 437 (443)
.+.
T Consensus 117 l~~ 119 (261)
T 2eyu_A 117 LRA 119 (261)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 87
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.64 E-value=4.8e-17 Score=163.26 Aligned_cols=146 Identities=16% Similarity=0.145 Sum_probs=99.3
Q ss_pred CeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc---------------
Q psy208 275 PILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN--------------- 339 (443)
Q Consensus 275 ~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~--------------- 339 (443)
++++++++++.|+.+..+++++ |.|.+|++++|+||||||||||+++|+|+.+|+.|.+.+.+.
T Consensus 44 ~~i~~~~l~~~~~tg~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~~~~~ 122 (347)
T 2obl_A 44 DPLLRQVIDQPFILGVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLALLPQS 122 (347)
T ss_dssp CSTTCCCCCSEECCSCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHTTSCHH
T ss_pred CCeeecccceecCCCCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHHhhhhh
Confidence 4689999999996456799999 999999999999999999999999999999999998765321
Q ss_pred ---eEEEEeccCcccccccchhHHHHHHHhCCCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCe
Q psy208 340 ---LKFGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNF 416 (443)
Q Consensus 340 ---~~ig~~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~l 416 (443)
..+.+++|.... ........+. ...+.+++...+-.--..-..+..||+|| ||+++| +.+|++
T Consensus 123 ~~~~~v~~~~~~~~~---~~~r~~~~~~-------~~~~ae~~~~~~~~vl~~ld~~~~lS~g~-r~v~la---l~~p~~ 188 (347)
T 2obl_A 123 TLSKCVLVVTTSDRP---ALERMKAAFT-------ATTIAEYFRDQGKNVLLMMDSVTRYARAA-RDVGLA---SGEPDV 188 (347)
T ss_dssp HHTTEEEEEECTTSC---HHHHHHHHHH-------HHHHHHHHHTTTCEEEEEEETHHHHHHHH-HHHHHH---TTCCCC
T ss_pred hhhceEEEEECCCCC---HHHHHHHHHH-------HHHHHHHHHhccccHHHHHhhHHHHHHHH-HHHHHH---cCCCCc
Confidence 013344432110 0000000000 00011111111100000114678899999 899999 577877
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 417 LVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 417 LiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
|+|||+.....+.+.+.+.
T Consensus 189 ------t~Gldp~~~~~l~~ller~ 207 (347)
T 2obl_A 189 ------RGGFPPSVFSSLPKLLERA 207 (347)
T ss_dssp ------BTTBCHHHHHHHHHHHTTC
T ss_pred ------ccCCCHHHHHHHHHHHHHH
Confidence 9999999999999998765
No 88
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.63 E-value=4.3e-16 Score=173.20 Aligned_cols=128 Identities=15% Similarity=0.144 Sum_probs=83.3
Q ss_pred eEEEeeeEEEe-----C-CCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCC-CCceEEEcCceEEEEeccC
Q psy208 276 ILQLSEVNFEY-----V-PGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISP-TAGTRTVHRNLKFGYFSQH 348 (443)
Q Consensus 276 ~l~~~~l~~~y-----~-~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p-~~G~i~~~~~~~ig~~~Q~ 348 (443)
.|.+++...-+ + +++.+++|+||++.+|++++|+||||||||||||+|+++... ..|.........++++.
T Consensus 640 ~i~i~~~rHP~le~~~~~~~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~~vpa~~~~i~~~d-- 717 (918)
T 3thx_B 640 KIVIKNGRHPVIDVLLGEQDQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMAQIGSYVPAEEATIGIVD-- 717 (918)
T ss_dssp EEEEEEECCHHHHHHTCSCSSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHHHHTCCBSSSEEEEECCS--
T ss_pred cEEEEeccchhhhhhhccCCceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHhhcCccccchhhhhhHHH--
Confidence 46666654322 1 246799999999999999999999999999999999754211 11110000001112111
Q ss_pred cccccccchhHHHHHHHhCCCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCCH
Q psy208 349 HVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDI 428 (443)
Q Consensus 349 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD~ 428 (443)
.++..+|.. +...+.++.+|+|+++++.++++ +.+|++|||||||+|||+
T Consensus 718 ----------------------------~i~~~ig~~-d~l~~~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~ 767 (918)
T 3thx_B 718 ----------------------------GIFTRMGAA-DNIYKGRSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTST 767 (918)
T ss_dssp ----------------------------EEEEEC-----------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCH
T ss_pred ----------------------------HHHHhCChH-HHHHHhHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCH
Confidence 012223332 23445667899999999999998 899999999999999999
Q ss_pred HHHHHHH
Q psy208 429 ETIEALG 435 (443)
Q Consensus 429 ~s~~~l~ 435 (443)
.....+.
T Consensus 768 ~~~~~i~ 774 (918)
T 3thx_B 768 HDGIAIA 774 (918)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9888776
No 89
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.63 E-value=6.4e-16 Score=155.58 Aligned_cols=52 Identities=23% Similarity=0.089 Sum_probs=48.1
Q ss_pred hccCC-CCCHHHHHHHHHHHHhc---------cCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 390 LQFVG-SLSGGQKSRVAFARMCM---------AAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 390 ~~~~~-~LSgGekqRl~lA~al~---------~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
++++. .||||||||++||++|+ .+|+||||||||++||+..+..|.+.|.++
T Consensus 259 ~~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~ 320 (359)
T 2o5v_A 259 DFPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASV 320 (359)
T ss_dssp TEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHS
T ss_pred CcchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhc
Confidence 35677 79999999999999999 899999999999999999999999998764
No 90
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.63 E-value=6.3e-16 Score=169.39 Aligned_cols=128 Identities=20% Similarity=0.201 Sum_probs=92.1
Q ss_pred eEEEeeeEEEeC--CCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCC-CCCceEEEcCceEEEEeccCcccc
Q psy208 276 ILQLSEVNFEYV--PGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIIS-PTAGTRTVHRNLKFGYFSQHHVDQ 352 (443)
Q Consensus 276 ~l~~~~l~~~y~--~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~-p~~G~i~~~~~~~ig~~~Q~~~~~ 352 (443)
.|.+++...-.- +++.+++|+||+ |++++|+||||||||||||+|+|+.. |+.|.+.......+++++|-.
T Consensus 550 ~i~i~~~rHP~le~~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~vpa~~~~i~~v~~i~--- 623 (765)
T 1ewq_A 550 RLQIRAGRHPVVERRTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFVPAEEAHLPLFDGIY--- 623 (765)
T ss_dssp SEEEEEECCTTGGGTSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBSSSEEEECCCSEEE---
T ss_pred cEEEEEeECceEccCCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCceeehhccceeeHHHhh---
Confidence 466766633220 235789999999 99999999999999999999999874 778875433334566665411
Q ss_pred cccchhHHHHHHHhCCCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHh--ccCCCeEEEeCC---CCCCC
Q psy208 353 LDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMC--MAAPNFLVLDEP---TNHLD 427 (443)
Q Consensus 353 l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al--~~~p~lLiLDEP---Tn~LD 427 (443)
...+..+. ....+|+|+++++.+++++ +.+|+++||||| |++||
T Consensus 624 --~~~~~~d~-----------------------------l~~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD 672 (765)
T 1ewq_A 624 --TRIGASDD-----------------------------LAGGKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLD 672 (765)
T ss_dssp --EECCC-----------------------------------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHH
T ss_pred --ccCCHHHH-----------------------------HHhcccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcC
Confidence 11111110 0124799999999999999 999999999999 99999
Q ss_pred HHHH-HHHHHHHcc
Q psy208 428 IETI-EALGKAINK 440 (443)
Q Consensus 428 ~~s~-~~l~~~L~~ 440 (443)
..+. ..+.+.|.+
T Consensus 673 ~~~~~~~i~~~L~~ 686 (765)
T 1ewq_A 673 GVAIATAVAEALHE 686 (765)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 9886 467777653
No 91
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.61 E-value=9.9e-16 Score=170.77 Aligned_cols=120 Identities=17% Similarity=0.144 Sum_probs=80.0
Q ss_pred eEEEeeeEEEeC----CCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHH--------HcCCCCCCceEEEcCceEEE
Q psy208 276 ILQLSEVNFEYV----PGKPILTNVCLGATLESRICIVGDNGAGKTTLLKII--------MGIISPTAGTRTVHRNLKFG 343 (443)
Q Consensus 276 ~l~~~~l~~~y~----~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l--------~G~~~p~~G~i~~~~~~~ig 343 (443)
.+.+++...-+- +++.+++|++|++.+|++++|+||||||||||||+| .|...|.++. .++
T Consensus 631 ~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~-------~~~ 703 (934)
T 3thx_A 631 RIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESA-------EVS 703 (934)
T ss_dssp EEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEE-------EEE
T ss_pred ceEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCccccccc-------cch
Confidence 456655443221 235689999999999999999999999999999999 6655554322 122
Q ss_pred EeccCcccccccchhHHHHHHHhCCCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHh--ccCCCeEEEeC
Q psy208 344 YFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMC--MAAPNFLVLDE 421 (443)
Q Consensus 344 ~~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al--~~~p~lLiLDE 421 (443)
.+.+ ++..+|.. + .....+|+|+.+++.+|+++ +.+|+++||||
T Consensus 704 ~~d~------------------------------i~~~ig~~-d---~l~~~lStf~~e~~~~a~il~~a~~~sLlLLDE 749 (934)
T 3thx_A 704 IVDC------------------------------ILARVGAG-D---SQLKGVSTFMAEMLETASILRSATKDSLIIIDE 749 (934)
T ss_dssp CCSE------------------------------EEEECC-------------CHHHHHHHHHHHHHHHCCTTCEEEEES
T ss_pred HHHH------------------------------HHHhcCch-h---hHHHhHhhhHHHHHHHHHHHHhccCCcEEEEeC
Confidence 1110 11222322 1 12245777777777777777 89999999999
Q ss_pred CCCCCCHHHHHHHHH
Q psy208 422 PTNHLDIETIEALGK 436 (443)
Q Consensus 422 PTn~LD~~s~~~l~~ 436 (443)
||+|+|+.....+..
T Consensus 750 p~~GlD~~~~~~i~~ 764 (934)
T 3thx_A 750 LGRGTSTYDGFGLAW 764 (934)
T ss_dssp CSCSSCHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHH
Confidence 999999988777733
No 92
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.61 E-value=2.8e-18 Score=159.25 Aligned_cols=129 Identities=14% Similarity=0.098 Sum_probs=93.8
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCceEEEEeccCcccccccchhHHHHHHHhCC---CCCHHHHH
Q psy208 300 ATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEAAFP---GKPQEEYR 376 (443)
Q Consensus 300 i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ig~~~Q~~~~~l~~~~~~~~~~~~~~~---~~~~~~~~ 376 (443)
..+|+++||+||||||||||+++|+|++.| .++|++|+.........+..+.....+. ......+.
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~-----------~i~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE-----------RVALLPMDHYYKDLGHLPLEERLRVNYDHPDAFDLALYL 71 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG-----------GEEEEEGGGCBCCCTTSCHHHHHHSCTTSGGGBCHHHHH
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC-----------CeEEEecCccccCcccccHHHhcCCCCCChhhhhHHHHH
Confidence 468999999999999999999999998765 4788888753221122333333321111 12345566
Q ss_pred HHHhcCCCChhhhhccCCCCCHHHH----HHHHHHHHhccCCCeEEEeCCCCC-------CCHHHHHHHHHHHcc
Q psy208 377 RQLGGFGVSGDLALQFVGSLSGGQK----SRVAFARMCMAAPNFLVLDEPTNH-------LDIETIEALGKAINK 440 (443)
Q Consensus 377 ~~L~~~gl~~~~~~~~~~~LSgGek----qRl~lA~al~~~p~lLiLDEPTn~-------LD~~s~~~l~~~L~~ 440 (443)
+.+..+++. +....++..+|+|++ ||+++|++++.+|.++++||||++ ||+.....+.+.+.+
T Consensus 72 ~~l~~~~~~-~~~~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~l~r 145 (211)
T 3asz_A 72 EHAQALLRG-LPVEMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIRRLKR 145 (211)
T ss_dssp HHHHHHHTT-CCEEECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHHHHH
T ss_pred HHHHHHHcC-CCcCCCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHHHHH
Confidence 777777664 345678889999974 688999999999999999999999 999888877777653
No 93
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.60 E-value=7.9e-18 Score=165.83 Aligned_cols=139 Identities=13% Similarity=0.111 Sum_probs=66.0
Q ss_pred eeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcC-CCCCCceEEEcC--------ceEEEEeccCcc
Q psy208 280 SEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGI-ISPTAGTRTVHR--------NLKFGYFSQHHV 350 (443)
Q Consensus 280 ~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~-~~p~~G~i~~~~--------~~~ig~~~Q~~~ 350 (443)
.||++.|+ ++.++++++|+| +|+|+||||||||+++|+|. +.|++| +...+ ...+++++|...
T Consensus 2 ~~l~~~~~-~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~t~~~~~~~~~~q~~~ 73 (301)
T 2qnr_A 2 SNLPNQVH-RKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIERTVQIEASTVEIEERG 73 (301)
T ss_dssp -----------------CEEE------EEEEETTSSHHHHHHHHHC-------------------------CEEEEC---
T ss_pred CCCcceEC-CEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCCcceEeeEEEEecCCC
Confidence 57899995 578999999988 99999999999999999998 888888 43211 123567776532
Q ss_pred cccccchhHHHHHHHhCCCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCC-CCHH
Q psy208 351 DQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNH-LDIE 429 (443)
Q Consensus 351 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~-LD~~ 429 (443)
. ....++.+...........+....+... + .+..++++..+|||+|||+.+||+++ +|++||||++ ||+.
T Consensus 74 ~--~~~ltv~Dt~g~~~~~~~~e~~~~l~~~--l-~~~~~~~~~~~sgg~rqrv~~ara~~----ll~ldePt~~~Ld~~ 144 (301)
T 2qnr_A 74 V--KLRLTVVDTPGYGDAINCRDCFKTIISY--I-DEQFERYLHDESGLNRRHIIDNRVHC----CFYFISPFGHGLKPL 144 (301)
T ss_dssp C--CEEEEEEEEC-----------CTTHHHH--H-HHHHHHHHHHHTSSCCTTCCCCCCCE----EEEEECSSSSSCCHH
T ss_pred c--ccCcchhhhhhhhhhcCcHHHHHHHHHH--H-HHHHHHHHHHhCHHhhhhhhhhhhhh----eeeeecCcccCCCHH
Confidence 1 1111111100000000000011111111 0 12345778899999999999998885 9999999986 9998
Q ss_pred HHHHHH
Q psy208 430 TIEALG 435 (443)
Q Consensus 430 s~~~l~ 435 (443)
..+.+.
T Consensus 145 ~~~~l~ 150 (301)
T 2qnr_A 145 DVAFMK 150 (301)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 864443
No 94
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.59 E-value=2.2e-18 Score=160.21 Aligned_cols=136 Identities=14% Similarity=0.083 Sum_probs=78.1
Q ss_pred CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEc-------CceEEEEeccCcccccccchhHHHH
Q psy208 290 KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVH-------RNLKFGYFSQHHVDQLDMNLRCVQL 362 (443)
Q Consensus 290 ~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~-------~~~~ig~~~Q~~~~~l~~~~~~~~~ 362 (443)
.++++| .+|.+|++++|+||||||||||+|+|+|++++..+.+... ....++|++|++.. ....+..+.
T Consensus 9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~--~~~~~~~~~ 84 (207)
T 1znw_A 9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAPRPGEVDGVDYHFIDPTR--FQQLIDQGE 84 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHHSTTCEECCCEESSCCCTTCCBTTTBEECCHHH--HHHHHHTTC
T ss_pred CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCceEEcccccccCCcccccCCCeeEecCHHH--HHHHHhcCC
Confidence 457777 7999999999999999999999999999986332221110 11247788887521 111111111
Q ss_pred HH------H--hCCCCCHHHHHHH----------HhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCC
Q psy208 363 LE------A--AFPGKPQEEYRRQ----------LGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTN 424 (443)
Q Consensus 363 ~~------~--~~~~~~~~~~~~~----------L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn 424 (443)
+. . ...+.....+.+. +..+|+. ...++++..|| +|+.+|++++|||||+
T Consensus 85 l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~lS-----------~l~~~p~~~~LDep~~ 152 (207)
T 1znw_A 85 LLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGAR-AIKKTMPEAVT-----------VFLAPPSWQDLQARLI 152 (207)
T ss_dssp EEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHH-HHHHHCTTSEE-----------EEEECSCHHHHHHHHH
T ss_pred ceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHH-HHHHhcCCcEE-----------EEEECCCHHHHHHHHH
Confidence 10 0 0001112222222 2233332 34456777777 8999999999999999
Q ss_pred CC----CHHHHHHHHHHHccc
Q psy208 425 HL----DIETIEALGKAINKY 441 (443)
Q Consensus 425 ~L----D~~s~~~l~~~L~~~ 441 (443)
++ |+..+..+.+.+.++
T Consensus 153 ~l~~~~d~~~~~~l~~~l~~l 173 (207)
T 1znw_A 153 GRGTETADVIQRRLDTARIEL 173 (207)
T ss_dssp TTSCSCHHHHHHHHHHHHHHH
T ss_pred hcCCCCHHHHHHHHHHHHHHH
Confidence 98 788888888877654
No 95
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.55 E-value=1.1e-15 Score=149.39 Aligned_cols=142 Identities=14% Similarity=0.131 Sum_probs=83.6
Q ss_pred CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCc-eEEEc-Cce-------EEEEeccCcccccccchhHH
Q psy208 290 KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAG-TRTVH-RNL-------KFGYFSQHHVDQLDMNLRCV 360 (443)
Q Consensus 290 ~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G-~i~~~-~~~-------~ig~~~Q~~~~~l~~~~~~~ 360 (443)
.++|+++++.|.+|++++|+||||||||||+++|+|...|++| .|.+. ... ++.++.+.. .. ...
T Consensus 22 ~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~~~~~~~~r~~~~~~~~----~~--~~~ 95 (296)
T 1cr0_A 22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEESVEETAEDLIGLHNRV----RL--RQS 95 (296)
T ss_dssp CTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSSCHHHHHHHHHHHHTTC----CG--GGC
T ss_pred HHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcCCHHHHHHHHHHHHcCC----Ch--hhc
Confidence 3589999999999999999999999999999999999999877 44321 100 000001100 00 000
Q ss_pred HHHHH-hCC-CCCHHHHHHHHhcCCCChhhhhccCCCCCHHH-HHHHHHHHHhccCCCeEEEeCCCC---C---CCH-HH
Q psy208 361 QLLEA-AFP-GKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQ-KSRVAFARMCMAAPNFLVLDEPTN---H---LDI-ET 430 (443)
Q Consensus 361 ~~~~~-~~~-~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGe-kqRl~lA~al~~~p~lLiLDEPTn---~---LD~-~s 430 (443)
..+.. ... ......+..++....+. ....+..+|.++ ++|+. |+++..+|++|||||||+ + +|. ..
T Consensus 96 ~~l~~~~~~~~~~~~~~~~~l~~~~l~---i~~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~~d~~~~ 171 (296)
T 1cr0_A 96 DSLKREIIENGKFDQWFDELFGNDTFH---LYDSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGESDERKM 171 (296)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHSSSCEE---EECCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-----------CHH
T ss_pred cccccCCCCHHHHHHHHHHHhccCCEE---EECCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCCCCHHHH
Confidence 00000 000 00011122333333321 223346789999 66666 999999999999999999 4 455 56
Q ss_pred HHHHHHHHccc
Q psy208 431 IEALGKAINKY 441 (443)
Q Consensus 431 ~~~l~~~L~~~ 441 (443)
...+.+.|+++
T Consensus 172 ~~~i~~~L~~l 182 (296)
T 1cr0_A 172 IDNLMTKLKGF 182 (296)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66677766543
No 96
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.51 E-value=4.1e-16 Score=159.96 Aligned_cols=140 Identities=13% Similarity=0.084 Sum_probs=80.3
Q ss_pred CeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCce--EEEc-----CceEEEEecc
Q psy208 275 PILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGT--RTVH-----RNLKFGYFSQ 347 (443)
Q Consensus 275 ~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~--i~~~-----~~~~ig~~~Q 347 (443)
.+|.++||+++|+ ++.+++++||+| +|+|+||||||||+++|+|...|+.|. +.+. ....++|++|
T Consensus 10 ~~l~~~~l~~~y~-~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q 82 (418)
T 2qag_C 10 GYVGFANLPNQVY-RKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIK 82 (418)
T ss_dssp -----CCCCCCTT-TTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC--
T ss_pred CcEEEEecceeEC-CEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEe
Confidence 4689999999995 578999999997 999999999999999999998765441 1110 1124677777
Q ss_pred CcccccccchhHHHHHHH--hCCC-CCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCC---eEEEeC
Q psy208 348 HHVDQLDMNLRCVQLLEA--AFPG-KPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPN---FLVLDE 421 (443)
Q Consensus 348 ~~~~~l~~~~~~~~~~~~--~~~~-~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~---lLiLDE 421 (443)
.... ....++.+.... .... ..-..+...+. ..++.++++|++||++++.+|+ +|++||
T Consensus 83 ~~~~--~~~Ltv~Dt~g~~~~~~~~~~~~~i~~~i~-------------~~~~~~l~qr~~IaRal~~d~~~~vlL~lde 147 (418)
T 2qag_C 83 EGGV--QLLLTIVDTPGFGDAVDNSNCWQPVIDYID-------------SKFEDYLNAESRVNRRQMPDNRVQCCLYFIA 147 (418)
T ss_dssp ------CEEEEEEECC-----------CHHHHHHHH-------------HHHHHHTTTSCC-CCCCCCCC-CCEEEEECC
T ss_pred cCCc--ccceeeeechhhhhhccchhhHHHHHHHHH-------------HHHHHHHHHHHHHHHHhccCCCeeEEEEEec
Confidence 5321 111111111100 0000 00011111111 1355677889999999999999 999999
Q ss_pred CC-CCCCHHHHHHHHH
Q psy208 422 PT-NHLDIETIEALGK 436 (443)
Q Consensus 422 PT-n~LD~~s~~~l~~ 436 (443)
|| ++||+...+.+..
T Consensus 148 Pt~~~L~~~d~~~lk~ 163 (418)
T 2qag_C 148 PSGHGLKPLDIEFMKR 163 (418)
T ss_dssp C-CCSCCHHHHHHHHH
T ss_pred CcccCCCHHHHHHHHH
Confidence 99 6999988655543
No 97
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.50 E-value=8.6e-17 Score=170.05 Aligned_cols=142 Identities=16% Similarity=0.128 Sum_probs=91.4
Q ss_pred eEEEeeeEEEeCCCCceeeeeeE-EEeCCCEEEEECCCCCcHHHHHHH--HHcCCCCCCceEEEcCc----------eEE
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCL-GATLESRICIVGDNGAGKTTLLKI--IMGIISPTAGTRTVHRN----------LKF 342 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl-~i~~Ge~i~iiG~NGsGKSTLlk~--l~G~~~p~~G~i~~~~~----------~~i 342 (443)
+++.+++.+ |+++.++|+++|| .|.+|++++|+||||||||||+++ ++|+++|++|.|++... ..+
T Consensus 12 ~~~~~~~~~-~~~g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~~~~~~~~~~~ 90 (525)
T 1tf7_A 12 NSEHQAIAK-MRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSF 90 (525)
T ss_dssp --CCSSCCE-ECCCCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHGGG
T ss_pred Ccccccccc-ccCCchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHc
Confidence 456666764 4456789999999 999999999999999999999999 78999999999987542 124
Q ss_pred EEeccCcccccccchhHHHHHHHhCCCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCC
Q psy208 343 GYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEP 422 (443)
Q Consensus 343 g~~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEP 422 (443)
||++|++........ ..... . .....++..+++. +..++.+..||+| +|++++||||
T Consensus 91 g~~~q~~~~~~~l~~-------~~~~~-~-~~~~~~l~~~~l~-~~~~~~~~~LS~g-------------~~~~lilDe~ 147 (525)
T 1tf7_A 91 GWDLAKLVDEGKLFI-------LDASP-D-PEGQEVVGGFDLS-ALIERINYAIQKY-------------RARRVSIDSV 147 (525)
T ss_dssp TCCHHHHHHTTSEEE-------EECCC-C-SSCCSCCSSHHHH-HHHHHHHHHHHHH-------------TCSEEEEECS
T ss_pred CCChHHhhccCcEEE-------EecCc-c-cchhhhhcccCHH-HHHHHHHHHHHHc-------------CCCEEEECCH
Confidence 555554321000000 00000 0 0001112222221 2334445555555 5889999999
Q ss_pred CCC-----CCHHHHHHHHHHHccc
Q psy208 423 TNH-----LDIETIEALGKAINKY 441 (443)
Q Consensus 423 Tn~-----LD~~s~~~l~~~L~~~ 441 (443)
|+. ||+..++.|.+.++.+
T Consensus 148 t~~~~~~~lD~~~~~~l~~ll~~l 171 (525)
T 1tf7_A 148 TSVFQQYDASSVVRRELFRLVARL 171 (525)
T ss_dssp TTTSTTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHH
Confidence 984 6899999999888754
No 98
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.48 E-value=3.3e-14 Score=137.95 Aligned_cols=132 Identities=14% Similarity=0.085 Sum_probs=85.8
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcC----ceEEEEeccCcccccccchhHHHHHHHhCCCCCHHH
Q psy208 299 GATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR----NLKFGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEE 374 (443)
Q Consensus 299 ~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~----~~~ig~~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~ 374 (443)
.|.+|++++|+||||||||||++.|++... .|.+..+. ...+.|+..+.. .. .....+...........
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~--~g~~~~g~~~~~~~~v~~~~~e~~--~~---~~~~r~~~~g~~~~~~~ 98 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA--GGPDLLEVGELPTGPVIYLPAEDP--PT---AIHHRLHALGAHLSAEE 98 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCCTTCCCCCCCCCEEEEESSSC--HH---HHHHHHHHHHTTSCHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh--cCCCcCCCccCCCccEEEEECCCC--HH---HHHHHHHHHHhhcChhh
Confidence 378999999999999999999999998654 34332211 234667665421 11 11111111111223444
Q ss_pred HHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCC--CCCHHHH---HHHHHHHccc
Q psy208 375 YRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTN--HLDIETI---EALGKAINKY 441 (443)
Q Consensus 375 ~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn--~LD~~s~---~~l~~~L~~~ 441 (443)
...++..+++. +..++++..||+|+.+++ ++++.+|+++|+||||+ ++|.... ..+.+.|..+
T Consensus 99 ~~~~~~~l~l~-~~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l 166 (279)
T 1nlf_A 99 RQAVADGLLIQ-PLIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAI 166 (279)
T ss_dssp HHHHHHHEEEC-CCTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHH
T ss_pred hhhccCceEEe-ecCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHH
Confidence 55567777664 345678999999997765 57778999999999999 9997443 5555555543
No 99
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.46 E-value=1.2e-15 Score=145.38 Aligned_cols=131 Identities=20% Similarity=0.228 Sum_probs=85.8
Q ss_pred CCCEEEEECCCCCcHHHHHHHHH---cCCCCCCceEEEcCc-------eEEEEeccCcccccccchhHHHHHHHh-----
Q psy208 302 LESRICIVGDNGAGKTTLLKIIM---GIISPTAGTRTVHRN-------LKFGYFSQHHVDQLDMNLRCVQLLEAA----- 366 (443)
Q Consensus 302 ~Ge~i~iiG~NGsGKSTLlk~l~---G~~~p~~G~i~~~~~-------~~ig~~~Q~~~~~l~~~~~~~~~~~~~----- 366 (443)
++++++|+||||||||||+++|+ |+..|+.|++.+... ..+++++|+. .+.+..++.+.+...
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~v~~~l~~~l~~~~ 103 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKS--LLVPDHVITRLMMSELENRR 103 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTTCHHHHHHHHHHHTT--CCCCHHHHHHHHHHHHHTCT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcCChHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHhcC
Confidence 47899999999999999999999 999999998755321 1122334432 122333433333210
Q ss_pred -----CCC--CCHHHHHHHHhcCCCC-------------hhhhhccCCCCCHHHHHHHHHHHHh-ccCCCeEEEe----C
Q psy208 367 -----FPG--KPQEEYRRQLGGFGVS-------------GDLALQFVGSLSGGQKSRVAFARMC-MAAPNFLVLD----E 421 (443)
Q Consensus 367 -----~~~--~~~~~~~~~L~~~gl~-------------~~~~~~~~~~LSgGekqRl~lA~al-~~~p~lLiLD----E 421 (443)
..+ ....++..+.....+. ....++++..||| |+ +++ +.+|++++|| |
T Consensus 104 ~~~~il~g~~~~~~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~~~~lSg----rv---~al~~~~P~~lllD~~~~E 176 (246)
T 2bbw_A 104 GQHWLLDGFPRTLGQAEALDKICEVDLVISLNIPFETLKDRLSRRWIHPPSG----RV---YNLDFNPPHVHGIDDVTGE 176 (246)
T ss_dssp TSCEEEESCCCSHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTT----EE---EETTTSCCSSTTBCTTTCC
T ss_pred CCeEEEECCCCCHHHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCCCcCCCC----Cc---cccccCCCccccccccccc
Confidence 001 1222333332211211 2234677889999 65 667 9999999999 9
Q ss_pred CCCCCCHHHHHHHHHHHccc
Q psy208 422 PTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 422 PTn~LD~~s~~~l~~~L~~~ 441 (443)
||++||..+.+.+.+.|..|
T Consensus 177 P~~~ld~~~~~~i~~~l~~~ 196 (246)
T 2bbw_A 177 PLVQQEDDKPEAVAARLRQY 196 (246)
T ss_dssp BCBCCGGGSHHHHHHHHHHH
T ss_pred ccccCCCCcHHHHHHHHHHH
Confidence 99999999999988888765
No 100
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.46 E-value=1.1e-13 Score=152.56 Aligned_cols=113 Identities=13% Similarity=0.044 Sum_probs=69.9
Q ss_pred CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCC-CCCceEEEcCceEEEEeccCcccccccchhHHHHHHHhC
Q psy208 289 GKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIIS-PTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEAAF 367 (443)
Q Consensus 289 ~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~-p~~G~i~~~~~~~ig~~~Q~~~~~l~~~~~~~~~~~~~~ 367 (443)
++.+++|++|+ .+|++++|+||||||||||||+|+|+.. ...|.........+++++|- ....+..+
T Consensus 594 ~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~~vpa~~~~i~~~~~i-----~~~~~~~d------ 661 (800)
T 1wb9_A 594 EPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGSYVPAQKVEIGPIDRI-----FTRVGAAD------ 661 (800)
T ss_dssp SCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTCCBSSSEEEECCCCEE-----EEEEC---------
T ss_pred Cceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcCcccchhcccceeHHHH-----HhhCCHHH------
Confidence 45799999999 9999999999999999999999999742 23342111112234444331 11111111
Q ss_pred CCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCCHHHHHHH
Q psy208 368 PGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEAL 434 (443)
Q Consensus 368 ~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l 434 (443)
......+.+|+++++ ++.+...+.+|+++||||||+|+|+.....+
T Consensus 662 --------------------~l~~~~stf~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i 707 (800)
T 1wb9_A 662 --------------------DLASGRSTFMVEMTE-TANILHNATEYSLVLMDEIGRGTSTYDGLSL 707 (800)
T ss_dssp ----------------------------CHHHHHH-HHHHHHHCCTTEEEEEESCCCCSSSSHHHHH
T ss_pred --------------------HHHhhhhhhhHHHHH-HHHHHHhccCCCEEEEECCCCCCChhHHHHH
Confidence 111223456777764 4444556899999999999888777555443
No 101
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.45 E-value=2.6e-14 Score=135.12 Aligned_cols=146 Identities=16% Similarity=0.140 Sum_probs=76.0
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHH--cCCCCCCceEEEcCceEEEEeccCccccc
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIM--GIISPTAGTRTVHRNLKFGYFSQHHVDQL 353 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~--G~~~p~~G~i~~~~~~~ig~~~Q~~~~~l 353 (443)
+++++.++..+++-..++.+ .|++|++++|+||||||||||+++|+ |..++..|.+.+... ....
T Consensus 6 ~~~~~~i~tg~~~lD~~l~G---gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~--------~~~~-- 72 (251)
T 2ehv_A 6 YQPVRRVKSGIPGFDELIEG---GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLE--------ERAR-- 72 (251)
T ss_dssp --CCCEECCSCTTTGGGTTT---SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESS--------SCHH--
T ss_pred ccccceeecCCHhHHHHhcC---CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEcc--------CCHH--
Confidence 45667777665421223322 68999999999999999999999999 664565565543221 0000
Q ss_pred ccchhHHHHHHHhCCCCCHHHHHH--HHhcC-------CCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCC
Q psy208 354 DMNLRCVQLLEAAFPGKPQEEYRR--QLGGF-------GVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTN 424 (443)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~--~L~~~-------gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn 424 (443)
...... ..+ ....+.... .+..+ ..............+.++........+-..+|++|||||||+
T Consensus 73 ----~~~~~~-~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~lilDep~~ 146 (251)
T 2ehv_A 73 ----DLRREM-ASF-GWDFEKYEKEGKIAIVDGVSSVVGLPSEEKFVLEDRFNVDNFLRYIYRVVKAINAKRLVIDSIPS 146 (251)
T ss_dssp ----HHHHHH-HTT-TCCHHHHHHTTSEEEEC-------------------CCHHHHHHHHHHHHHHTTCSEEEEECHHH
T ss_pred ----HHHHHH-HHc-CCChHHHhhcCCEEEEEccccccccccccceeccCcccHHHHHHHHHHHHHhhCCCEEEEccHHH
Confidence 000000 000 001110000 00000 000000001122334556555555555678999999999999
Q ss_pred CCC-----HHHHHHHHHHHcc
Q psy208 425 HLD-----IETIEALGKAINK 440 (443)
Q Consensus 425 ~LD-----~~s~~~l~~~L~~ 440 (443)
+|| +..++.+.+.+..
T Consensus 147 ~ld~~~d~~~~~~~l~~l~~~ 167 (251)
T 2ehv_A 147 IALRLEEERKIREVLLKLNTI 167 (251)
T ss_dssp HHHHSSSGGGHHHHHHHHHHH
T ss_pred HHhhcCCHHHHHHHHHHHHHH
Confidence 998 6666667766654
No 102
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.45 E-value=7e-16 Score=165.73 Aligned_cols=140 Identities=17% Similarity=0.282 Sum_probs=74.5
Q ss_pred CeEEEeeeEEEeCCC-Cceeeee----------eEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCC-CCceEEEcC----
Q psy208 275 PILQLSEVNFEYVPG-KPILTNV----------CLGATLESRICIVGDNGAGKTTLLKIIMGIISP-TAGTRTVHR---- 338 (443)
Q Consensus 275 ~~l~~~~l~~~y~~~-~~il~~v----------sl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p-~~G~i~~~~---- 338 (443)
+.+.++|+++.|+.. +++++.+ +|+++. +||+|||||||||||++|+|++.| ++|.|++.+
T Consensus 9 ~~i~~~~l~~~~~~~~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~ 85 (608)
T 3szr_A 9 GSVAENNLCSQYEEKVRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLK 85 (608)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEE
T ss_pred chhhhhhhhHHHHHHHHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEE
Confidence 358899999999532 2455444 355654 999999999999999999999988 799876532
Q ss_pred ----------ceEEEEeccCcccccccchhHHHHHHHhCCCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHH
Q psy208 339 ----------NLKFGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFAR 408 (443)
Q Consensus 339 ----------~~~ig~~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~ 408 (443)
...+||++|++. +....++.+++.. ....+...+ ..+| ++++.++.
T Consensus 86 ~~~~~~~~~~~~~i~~v~Q~~~--l~~~~tv~e~i~~---------~~~~~~~~~----------~~~s---~~~i~l~i 141 (608)
T 3szr_A 86 LKKLVNEDKWRGKVSYQDYEIE--ISDASEVEKEINK---------AQNAIAGEG----------MGIS---HELITLEI 141 (608)
T ss_dssp EEECSSSSCCEEEESCC---CC--CCCHHHHHTTHHH---------HHHHHHCSS----------SCCC---SCCEEEEE
T ss_pred EecCCccccceeEEeeeccccc--CCCHHHHHHHHHH---------HHHHhcCCc----------cccc---hHHHHHHh
Confidence 235788888742 3333344333321 111111111 0011 12223333
Q ss_pred HhccCCCeEEEeCC------CCCCCHHHHHHHHHHHccc
Q psy208 409 MCMAAPNFLVLDEP------TNHLDIETIEALGKAINKY 441 (443)
Q Consensus 409 al~~~p~lLiLDEP------Tn~LD~~s~~~l~~~L~~~ 441 (443)
+....|+++|+||| |++||+..+..+.+.+..|
T Consensus 142 ~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~ 180 (608)
T 3szr_A 142 SSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKY 180 (608)
T ss_dssp EESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHH
T ss_pred cCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHH
Confidence 44568999999999 9999999999999988875
No 103
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.42 E-value=1.5e-13 Score=128.05 Aligned_cols=138 Identities=12% Similarity=0.038 Sum_probs=84.8
Q ss_pred CCceeeeeeE-EEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCceEEEEeccCcccccccchhHHHHHHHhC
Q psy208 289 GKPILTNVCL-GATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEAAF 367 (443)
Q Consensus 289 ~~~il~~vsl-~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ig~~~Q~~~~~l~~~~~~~~~~~~~~ 367 (443)
+.+.|+++.. .|.+|++++|+||||||||||++.|++...+.+|.+.+ +..+.. . ......+.. .
T Consensus 8 g~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~--------~~~~~~----~-~~~~~~~~~-~ 73 (235)
T 2w0m_A 8 GILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIY--------VTTEES----R-DSIIRQAKQ-F 73 (235)
T ss_dssp SCHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEE--------EESSSC----H-HHHHHHHHH-T
T ss_pred CchHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEE--------EEcccC----H-HHHHHHHHH-h
Confidence 3567888887 89999999999999999999999999988777665533 322210 0 011111111 1
Q ss_pred CCCCHHHHH-HHHhcCCCChhh--hhccCCCCCHHHHHHHHHHHHhccCCC--eEEEeCCCCCC--CHHHHHHHHHHHcc
Q psy208 368 PGKPQEEYR-RQLGGFGVSGDL--ALQFVGSLSGGQKSRVAFARMCMAAPN--FLVLDEPTNHL--DIETIEALGKAINK 440 (443)
Q Consensus 368 ~~~~~~~~~-~~L~~~gl~~~~--~~~~~~~LSgGekqRl~lA~al~~~p~--lLiLDEPTn~L--D~~s~~~l~~~L~~ 440 (443)
..... ... ..+..+...... ........|.++.++...+.+...+|+ +||+||||+.+ |+.....+.+.|.+
T Consensus 74 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~ 152 (235)
T 2w0m_A 74 NWDFE-EYIEKKLIIIDALMKEKEDQWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKR 152 (235)
T ss_dssp TCCCG-GGBTTTEEEEECCC----CTTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHH
T ss_pred cchHH-HHhhCCEEEEeccccccCceeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHH
Confidence 00000 000 000000000000 000113459999998888888788999 99999999888 99888888777765
Q ss_pred c
Q psy208 441 Y 441 (443)
Q Consensus 441 ~ 441 (443)
+
T Consensus 153 ~ 153 (235)
T 2w0m_A 153 V 153 (235)
T ss_dssp H
T ss_pred H
Confidence 3
No 104
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.42 E-value=1.1e-13 Score=131.89 Aligned_cols=80 Identities=18% Similarity=0.138 Sum_probs=63.3
Q ss_pred HHHHHHHHhCC-CChhhhhccCCCCChHHHH--------------------------HHHHHHHHHhhh---CCCeEEEE
Q psy208 117 ARASVILAGLG-FTPEMQKRATKHFSGGWRK--------------------------MAIIWLENYLQN---WPTTLLVV 166 (443)
Q Consensus 117 ~rv~~~L~~lg-l~~~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L~~---~~~tviiV 166 (443)
.++..++..+| +.+ ..++++.+||||||| .+...+.+.|++ .+.|||+|
T Consensus 117 ~~~~~~l~~~~~l~~-~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~v 195 (240)
T 1ji0_A 117 RDLEWIFSLFPRLKE-RLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLV 195 (240)
T ss_dssp HHHHHHHHHCHHHHT-TTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHcccHhh-HhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 46677788884 754 468899999999999 455566665543 46799999
Q ss_pred ecCHHHHhccCCcEEEEeCCeeEEEcCChhHH
Q psy208 167 SHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAF 198 (443)
Q Consensus 167 SHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y 198 (443)
|||.+++..+||+|+.|++|++. +.|+.++.
T Consensus 196 tHd~~~~~~~~d~v~~l~~G~i~-~~g~~~~~ 226 (240)
T 1ji0_A 196 EQNALGALKVAHYGYVLETGQIV-LEGKASEL 226 (240)
T ss_dssp ESCHHHHHHHCSEEEEEETTEEE-EEEEHHHH
T ss_pred ecCHHHHHHhCCEEEEEECCEEE-EEcCHHHH
Confidence 99999999999999999999996 45776554
No 105
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.42 E-value=1.4e-12 Score=131.21 Aligned_cols=139 Identities=12% Similarity=0.161 Sum_probs=96.5
Q ss_pred HHHHHHHccccccCCCCCcceEEecCC--------------ceEEEEecccCC-CCchHHHHHHhccHHHHHHHHHHHHH
Q psy208 19 EFYCKALTLHLHLEGGMVSGQLRIPSH--------------ISVLHVEQEVVG-DDTPAIDSVLECDTKRQNLLNREKTI 83 (443)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~G~i~~~~~--------------~~i~~l~Q~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~l 83 (443)
++|.+.+.|...|+ +|+|.+... -+|||++|++.. ...|+.+.+... +
T Consensus 68 STLlr~i~GL~~p~----~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~------~------- 130 (366)
T 3tui_C 68 STLIRCVNLLERPT----EGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALP------L------- 130 (366)
T ss_dssp HHHHHHHHTSSCCS----EEEEEETTEECSSCCHHHHHHHHTTEEEECSSCCCCTTSCHHHHHHHH------H-------
T ss_pred HHHHHHHhcCCCCC----ceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCccCCCCCHHHHHHHH------H-------
Confidence 45556666655554 589876420 259999999865 445666554321 0
Q ss_pred HHHHhCCCCChhhHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCCChhhhhccCCCCChHHHH-----------------
Q psy208 84 TQAINNGTADANMSTELTQVFAELEAIEADKAPARASVILAGLGFTPEMQKRATKHFSGGWRK----------------- 146 (443)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~----------------- 146 (443)
.+ .+ ....+...|+.++|+.+|+.+ ..++++++|||||||
T Consensus 131 --~~-~~-------------------~~~~~~~~~v~~lL~~vgL~~-~~~~~~~~LSGGqkQRVaIArAL~~~P~lLLl 187 (366)
T 3tui_C 131 --EL-DN-------------------TPKDEVKRRVTELLSLVGLGD-KHDSYPSNLSGGQKQRVAIARALASNPKVLLC 187 (366)
T ss_dssp --HH-SC-------------------CCHHHHHHHHHHHHHHHTCGG-GTTCCTTTSCHHHHHHHHHHHHTTTCCSEEEE
T ss_pred --Hh-cC-------------------CCHHHHHHHHHHHHHHcCCch-HhcCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 00 00 011123458899999999985 468999999999999
Q ss_pred ---------HHHHHHHHHh----hhCCCeEEEEecCHHHHhccCCcEEEEeCCeeEEEcCChhHH
Q psy208 147 ---------MAIIWLENYL----QNWPTTLLVVSHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAF 198 (443)
Q Consensus 147 ---------~~i~wL~~~L----~~~~~tviiVSHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y 198 (443)
.+...+.+.| ++.+.|||+||||.+++..+||+|++|++|++. ..|...+.
T Consensus 188 DEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv-~~g~~~ev 251 (366)
T 3tui_C 188 DQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELI-EQDTVSEV 251 (366)
T ss_dssp ESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEE-ECCBHHHH
T ss_pred ECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEE-EEcCHHHH
Confidence 3444444444 345889999999999999999999999999996 56886654
No 106
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.42 E-value=1.1e-12 Score=127.44 Aligned_cols=82 Identities=20% Similarity=0.289 Sum_probs=66.7
Q ss_pred HHHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------HHHHHHHHHhh----hCCCeEEE
Q psy208 116 PARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAIIWLENYLQ----NWPTTLLV 165 (443)
Q Consensus 116 ~~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L~----~~~~tvii 165 (443)
..++.++|..+|+.+ ..++++.+||||||| .+...+.+.|+ +.+.|||+
T Consensus 121 ~~~~~~~l~~~~L~~-~~~~~~~~LSgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~ 199 (275)
T 3gfo_A 121 RKRVDNALKRTGIEH-LKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIII 199 (275)
T ss_dssp HHHHHHHHHHTTCGG-GTTSBGGGSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEE
T ss_pred HHHHHHHHHHcCCch-hhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEE
Confidence 457899999999975 568999999999999 34444444443 34789999
Q ss_pred EecCHHHHhccCCcEEEEeCCeeEEEcCChhHHH
Q psy208 166 VSHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAFD 199 (443)
Q Consensus 166 VSHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y~ 199 (443)
||||.+++..+||+|+.|++|++. +.|+..+..
T Consensus 200 vtHdl~~~~~~~drv~~l~~G~i~-~~g~~~~~~ 232 (275)
T 3gfo_A 200 ATHDIDIVPLYCDNVFVMKEGRVI-LQGNPKEVF 232 (275)
T ss_dssp EESCCSSGGGGCSEEEEEETTEEE-EEECHHHHT
T ss_pred EecCHHHHHHhCCEEEEEECCEEE-EECCHHHHh
Confidence 999999999999999999999996 568876653
No 107
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.42 E-value=1.4e-12 Score=125.13 Aligned_cols=140 Identities=19% Similarity=0.133 Sum_probs=93.8
Q ss_pred HHHHHHHccccccCCCCCcceEEecCCceEEEEecccCC-CCchHHHHHHhccHHHHHHHHHHHHHHHHHhCCCCChhhH
Q psy208 19 EFYCKALTLHLHLEGGMVSGQLRIPSHISVLHVEQEVVG-DDTPAIDSVLECDTKRQNLLNREKTITQAINNGTADANMS 97 (443)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~G~i~~~~~~~i~~l~Q~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~ 97 (443)
++|++.+.|.+.| ++|+|.+.+ +++|++|++.. ...|+.+.+.-... ...+..
T Consensus 45 STLl~~l~Gl~~p----~~G~I~~~~--~i~~v~q~~~~~~~~tv~enl~~~~~---------------~~~~~~----- 98 (253)
T 2nq2_C 45 STLLDLLLGIHRP----IQGKIEVYQ--SIGFVPQFFSSPFAYSVLDIVLMGRS---------------THINTF----- 98 (253)
T ss_dssp HHHHHHHTTSSCC----SEEEEEECS--CEEEECSCCCCSSCCBHHHHHHGGGG---------------GGSCTT-----
T ss_pred HHHHHHHhCCCCC----CCcEEEEec--cEEEEcCCCccCCCCCHHHHHHHhhh---------------hhcccc-----
Confidence 3444444444444 569998654 59999999754 34566554432100 000000
Q ss_pred HHHHHHHHHHhhcccCCHHHHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------HHHHH
Q psy208 98 TELTQVFAELEAIEADKAPARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAIIW 151 (443)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i~w 151 (443)
.......+.++.++|..+|+.+ ..++++.+||||||| .+..+
T Consensus 99 -----------~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~ 166 (253)
T 2nq2_C 99 -----------AKPKSHDYQVAMQALDYLNLTH-LAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDI 166 (253)
T ss_dssp -----------CCCCHHHHHHHHHHHHHTTCGG-GTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHH
T ss_pred -----------cCCCHHHHHHHHHHHHHcCChH-HhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHH
Confidence 0000012357888999999975 468999999999999 56666
Q ss_pred HHHHhhhC----CCeEEEEecCHHHHhccCCcEEEEeCCeeEEEcCChhHH
Q psy208 152 LENYLQNW----PTTLLVVSHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAF 198 (443)
Q Consensus 152 L~~~L~~~----~~tviiVSHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y 198 (443)
+.+.|+++ +.|||+||||.+++..+||+|+.|++|+ .+.|+.+++
T Consensus 167 l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~--~~~g~~~~~ 215 (253)
T 2nq2_C 167 VLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN--FKFGETRNI 215 (253)
T ss_dssp HHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETTE--EEEEEHHHH
T ss_pred HHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCe--EecCCHHHH
Confidence 66666432 7899999999999999999999999999 456776554
No 108
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.41 E-value=2.1e-12 Score=124.61 Aligned_cols=135 Identities=14% Similarity=0.146 Sum_probs=101.6
Q ss_pred chHHHHHHHccccccCCCCCcceEEecC--------CceEE-EEecccCCCCchHHHHHHhccHHHHHHHHHHHHHHHHH
Q psy208 17 SSEFYCKALTLHLHLEGGMVSGQLRIPS--------HISVL-HVEQEVVGDDTPAIDSVLECDTKRQNLLNREKTITQAI 87 (443)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~G~i~~~~--------~~~i~-~l~Q~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~ 87 (443)
|=++|++.+.|.+ |+. |+|.+.. .-+++ |++|++.. ..|+.+.+.... .+
T Consensus 42 GKSTLlk~l~Gl~-p~~----G~I~~~g~~~~~~~~~~~i~~~v~Q~~~l-~~tv~enl~~~~---------------~~ 100 (263)
T 2pjz_A 42 GKTTLLRAISGLL-PYS----GNIFINGMEVRKIRNYIRYSTNLPEAYEI-GVTVNDIVYLYE---------------EL 100 (263)
T ss_dssp SHHHHHHHHTTSS-CCE----EEEEETTEEGGGCSCCTTEEECCGGGSCT-TSBHHHHHHHHH---------------HH
T ss_pred CHHHHHHHHhCCC-CCC----cEEEECCEECcchHHhhheEEEeCCCCcc-CCcHHHHHHHhh---------------hh
Confidence 3468888888888 765 8887643 12599 99999866 556554432100 00
Q ss_pred hCCCCChhhHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCCChhhhhccCCCCChHHHH---------------------
Q psy208 88 NNGTADANMSTELTQVFAELEAIEADKAPARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------- 146 (443)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------- 146 (443)
. .....++.+++..+|+.....++++.+|||||||
T Consensus 101 --------------------~----~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPt 156 (263)
T 2pjz_A 101 --------------------K----GLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPF 156 (263)
T ss_dssp --------------------T----CCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTT
T ss_pred --------------------c----chHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCc
Confidence 0 0113568889999999823568999999999999
Q ss_pred -----HHHHHHHHHhhhCCCeEEEEecCHHHHhccCC-cEEEEeCCeeEEEcCChhH
Q psy208 147 -----MAIIWLENYLQNWPTTLLVVSHDRHFLDSVPT-DIFHLHSQRIDTYRGNYEA 197 (443)
Q Consensus 147 -----~~i~wL~~~L~~~~~tviiVSHDr~fLd~v~~-~i~~l~~g~i~~~~G~y~~ 197 (443)
.+..++.+.|+++..|||+||||.+++..+|| +|+.|++|++. +.|+.++
T Consensus 157 s~LD~~~~~~l~~~L~~~~~tviivtHd~~~~~~~~d~~i~~l~~G~i~-~~g~~~~ 212 (263)
T 2pjz_A 157 ENVDAARRHVISRYIKEYGKEGILVTHELDMLNLYKEYKAYFLVGNRLQ-GPISVSE 212 (263)
T ss_dssp TTCCHHHHHHHHHHHHHSCSEEEEEESCGGGGGGCTTSEEEEEETTEEE-EEEEHHH
T ss_pred cccCHHHHHHHHHHHHHhcCcEEEEEcCHHHHHHhcCceEEEEECCEEE-EecCHHH
Confidence 68889999998776699999999999999999 99999999986 4576544
No 109
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.41 E-value=1.6e-13 Score=121.03 Aligned_cols=53 Identities=30% Similarity=0.396 Sum_probs=49.1
Q ss_pred hhccCCCCCHHHHHHHHHH------HHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 389 ALQFVGSLSGGQKSRVAFA------RMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 389 ~~~~~~~LSgGekqRl~lA------~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
.++++.+||||||||++|| ++++.+|++|||||||++||+.++..+.+.|.++
T Consensus 51 ~~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~ 109 (148)
T 1f2t_B 51 KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERY 109 (148)
T ss_dssp EEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHT
T ss_pred ccCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHH
Confidence 4678999999999999876 8999999999999999999999999999999875
No 110
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.40 E-value=8.3e-15 Score=144.38 Aligned_cols=117 Identities=18% Similarity=0.114 Sum_probs=77.7
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-----------------eEEEEeccCcccccccchhHHHHHH
Q psy208 302 LESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-----------------LKFGYFSQHHVDQLDMNLRCVQLLE 364 (443)
Q Consensus 302 ~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------------~~ig~~~Q~~~~~l~~~~~~~~~~~ 364 (443)
+|++++|+||||||||||+++|+|+++|++|+|.+... ..++|++|++. +++..++.+.+.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~--~~p~~~v~~~v~ 178 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEG--TDSAALAYDAVQ 178 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTT--CCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCC--CCHHHHHHHHHH
Confidence 68999999999999999999999999999999977421 24788888752 344445555443
Q ss_pred HhC-CCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCC--eEEEeCCCCCCCHH
Q psy208 365 AAF-PGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPN--FLVLDEPTNHLDIE 429 (443)
Q Consensus 365 ~~~-~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~--lLiLDEPTn~LD~~ 429 (443)
... .... ..+++..|... ..... ++...+||++|||+++.+|+ +|.|| |+++.+..
T Consensus 179 ~~~~~~~d----~~llDt~G~~~-~~~~~---~~eLs~~r~~iaRal~~~P~~~lLvLD-a~t~~~~~ 237 (304)
T 1rj9_A 179 AMKARGYD----LLFVDTAGRLH-TKHNL---MEELKKVKRAIAKADPEEPKEVWLVLD-AVTGQNGL 237 (304)
T ss_dssp HHHHHTCS----EEEECCCCCCT-TCHHH---HHHHHHHHHHHHHHCTTCCSEEEEEEE-TTBCTHHH
T ss_pred HHHhCCCC----EEEecCCCCCC-chHHH---HHHHHHHHHHHHHhhcCCCCeEEEEEc-HHHHHHHH
Confidence 210 0000 00122334321 11222 34455899999999999999 77788 77776543
No 111
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.39 E-value=1.5e-12 Score=125.67 Aligned_cols=81 Identities=20% Similarity=0.255 Sum_probs=66.4
Q ss_pred HHHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------HHHHHHHHHhhh---CCCeEEEE
Q psy208 116 PARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAIIWLENYLQN---WPTTLLVV 166 (443)
Q Consensus 116 ~~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L~~---~~~tviiV 166 (443)
+.++.++|+.+|+.+ ..++++.+||||||| .+..++.+.|++ .+.|||+|
T Consensus 137 ~~~~~~~l~~~~L~~-~~~~~~~~LSgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~v 215 (263)
T 2olj_A 137 EAKAMELLDKVGLKD-KAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVV 215 (263)
T ss_dssp HHHHHHHHHHTTCGG-GTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHCCCch-HhcCChhhCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 357888999999974 468999999999999 455566665533 37899999
Q ss_pred ecCHHHHhccCCcEEEEeCCeeEEEcCChhHH
Q psy208 167 SHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAF 198 (443)
Q Consensus 167 SHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y 198 (443)
|||.+++..+||+|+.|++|++. +.|+.++.
T Consensus 216 tHd~~~~~~~~d~v~~l~~G~i~-~~g~~~~~ 246 (263)
T 2olj_A 216 THEMGFAREVGDRVLFMDGGYII-EEGKPEDL 246 (263)
T ss_dssp CSCHHHHHHHCSEEEEEETTEEE-EEECHHHH
T ss_pred cCCHHHHHHhCCEEEEEECCEEE-EECCHHHH
Confidence 99999999999999999999996 45777655
No 112
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.39 E-value=1.5e-13 Score=138.23 Aligned_cols=111 Identities=17% Similarity=0.236 Sum_probs=72.4
Q ss_pred eeeEEEeCC-CCceeeeeeE-------EEeCCCEEEEECCCCCcHHHHHHHHHcCCCCC-CceEEEc-CceE------EE
Q psy208 280 SEVNFEYVP-GKPILTNVCL-------GATLESRICIVGDNGAGKTTLLKIIMGIISPT-AGTRTVH-RNLK------FG 343 (443)
Q Consensus 280 ~~l~~~y~~-~~~il~~vsl-------~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~-~G~i~~~-~~~~------ig 343 (443)
..++++|.+ ..+.|+++.+ .+.+|++++|+|||||||||||++|+|+++|+ +|.|... .... .+
T Consensus 92 ~~~~iR~~~~~~~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~ 171 (356)
T 3jvv_A 92 AGAVFRTIPSKVLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKC 171 (356)
T ss_dssp EEEEEEEECCSCCCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSS
T ss_pred cEEEEEECCCCCCCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhcccc
Confidence 345555422 2345556555 67888999999999999999999999999987 5655321 1100 00
Q ss_pred EeccCcccccccchhHHHHHHHhCCCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCC
Q psy208 344 YFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPT 423 (443)
Q Consensus 344 ~~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPT 423 (443)
+++|.. .+ ...++-.+ +||++|..+|++||+||||
T Consensus 172 ~v~q~~--------------------------------~~---------~~~~~~~~----~La~aL~~~PdvillDEp~ 206 (356)
T 3jvv_A 172 LVNQRE--------------------------------VH---------RDTLGFSE----ALRSALREDPDIILVGEMR 206 (356)
T ss_dssp EEEEEE--------------------------------BT---------TTBSCHHH----HHHHHTTSCCSEEEESCCC
T ss_pred ceeeee--------------------------------ec---------cccCCHHH----HHHHHhhhCcCEEecCCCC
Confidence 111100 00 01122222 9999999999999999999
Q ss_pred CCCCHHHHHHHHHHH
Q psy208 424 NHLDIETIEALGKAI 438 (443)
Q Consensus 424 n~LD~~s~~~l~~~L 438 (443)
|.++.+.+.++.
T Consensus 207 ---d~e~~~~~~~~~ 218 (356)
T 3jvv_A 207 ---DLETIRLALTAA 218 (356)
T ss_dssp ---SHHHHHHHHHHH
T ss_pred ---CHHHHHHHHHHH
Confidence 888877766553
No 113
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.38 E-value=3.1e-12 Score=122.97 Aligned_cols=80 Identities=19% Similarity=0.153 Sum_probs=65.2
Q ss_pred HHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------HHHHHHHHHhh---hCCCeEEEEe
Q psy208 117 ARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAIIWLENYLQ---NWPTTLLVVS 167 (443)
Q Consensus 117 ~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L~---~~~~tviiVS 167 (443)
.++.++|..+|+.+ ..++++.+||||||| .+...+.+.|+ +.+.|||+||
T Consensus 125 ~~~~~~l~~~gL~~-~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivt 203 (256)
T 1vpl_A 125 EMVERATEIAGLGE-KIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSS 203 (256)
T ss_dssp HHHHHHHHHHCCGG-GGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHCCCch-HhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEc
Confidence 46888899999975 468999999999999 45555555553 3478999999
Q ss_pred cCHHHHhccCCcEEEEeCCeeEEEcCChhHH
Q psy208 168 HDRHFLDSVPTDIFHLHSQRIDTYRGNYEAF 198 (443)
Q Consensus 168 HDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y 198 (443)
||.+++..+|++|+.|++|++. +.|+.++.
T Consensus 204 Hd~~~~~~~~d~v~~l~~G~i~-~~g~~~~~ 233 (256)
T 1vpl_A 204 HNMLEVEFLCDRIALIHNGTIV-ETGTVEEL 233 (256)
T ss_dssp CCHHHHTTTCSEEEEEETTEEE-EEEEHHHH
T ss_pred CCHHHHHHHCCEEEEEECCEEE-EecCHHHH
Confidence 9999999999999999999996 45776654
No 114
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.38 E-value=2.7e-12 Score=123.76 Aligned_cols=82 Identities=27% Similarity=0.374 Sum_probs=66.2
Q ss_pred HHHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------HHHHHHHHHhh---hCCCeEEEE
Q psy208 116 PARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAIIWLENYLQ---NWPTTLLVV 166 (443)
Q Consensus 116 ~~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L~---~~~~tviiV 166 (443)
+.++.++|..+|+.+...++++.+||||||| .+...+.+.|+ +.+.|||+|
T Consensus 130 ~~~~~~~l~~~~L~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~v 209 (262)
T 1b0u_A 130 RERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVV 209 (262)
T ss_dssp HHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHHcCCCchhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 3578899999999853168999999999999 45555555553 337899999
Q ss_pred ecCHHHHhccCCcEEEEeCCeeEEEcCChhHH
Q psy208 167 SHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAF 198 (443)
Q Consensus 167 SHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y 198 (443)
|||.+++..+||+|+.|++|++. ..|+.++.
T Consensus 210 tHd~~~~~~~~d~v~~l~~G~i~-~~g~~~~~ 240 (262)
T 1b0u_A 210 THEMGFARHVSSHVIFLHQGKIE-EEGDPEQV 240 (262)
T ss_dssp CSCHHHHHHHCSEEEEEETTEEE-EEECHHHH
T ss_pred eCCHHHHHHhCCEEEEEECCEEE-EeCCHHHH
Confidence 99999999999999999999996 45777655
No 115
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.38 E-value=8.9e-15 Score=133.10 Aligned_cols=127 Identities=13% Similarity=0.079 Sum_probs=79.5
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCce---------EEEEeccCcccccccchhHHHHHHHhC--
Q psy208 299 GATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNL---------KFGYFSQHHVDQLDMNLRCVQLLEAAF-- 367 (443)
Q Consensus 299 ~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~---------~ig~~~Q~~~~~l~~~~~~~~~~~~~~-- 367 (443)
.+.+|++++|+||||||||||+++|+|. |+.|.|.+.... .++|++|... ...++.+++....
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~~~~~~~~~~~~~~~----~~~~v~~~l~~~~~~ 78 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQ----QNRMIMQIAADVAGR 78 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTCCSSCCCTTSSSHHH----HHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhhhcccccCCccchhh----hhHHHHHHHHHHHHH
Confidence 4778999999999999999999999997 788988775321 1344544321 1223333332100
Q ss_pred ---CCCCHHHHHHHHhcCCCChhhh--hccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 368 ---PGKPQEEYRRQLGGFGVSGDLA--LQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 368 ---~~~~~~~~~~~L~~~gl~~~~~--~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
.+.. ..+..++..+++. ... +.++..+|+|++++++++|++..+|+++ +|+...+.+.+.+..+
T Consensus 79 ~~~~~~~-~~~~~~~~~~~l~-~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~~~~~l 147 (191)
T 1zp6_A 79 YAKEGYF-VILDGVVRPDWLP-AFTALARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHSQFADL 147 (191)
T ss_dssp HHHTSCE-EEECSCCCTTTTH-HHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHHHTTCC
T ss_pred HhccCCe-EEEeccCcHHHHH-HHHhcCCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHHHHhcc
Confidence 0000 0000001111111 111 3456789999999999999999999876 6888888888877653
No 116
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.38 E-value=5.2e-13 Score=124.45 Aligned_cols=113 Identities=16% Similarity=0.215 Sum_probs=62.4
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCceEEEEeccCcccccccchhHHHHHHHhCCCCCHHHHHHH
Q psy208 299 GATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQ 378 (443)
Q Consensus 299 ~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ig~~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (443)
-|++|++++|+||||||||||+++|+|...|..|..... ..+-|+..... +.. .. ...+...+ ....+ .+
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~--~~~i~~~~~~~--~~~-~~-i~~~~~~~-~~~~~---~~ 90 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLN--GSVIWIDTENT--FRP-ER-IREIAQNR-GLDPD---EV 90 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCS--CEEEEEESSSC--CCH-HH-HHHHHHHT-TSCHH---HH
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCC--CEEEEEECCCC--CCH-HH-HHHHHHHc-CCCHH---HH
Confidence 689999999999999999999999999665533321111 12333333211 110 01 11111111 11111 22
Q ss_pred HhcCCCChhhhhccCCCCCHHHHH-HHHHHHHhcc-------CCCeEEEeCCCCCCCHH
Q psy208 379 LGGFGVSGDLALQFVGSLSGGQKS-RVAFARMCMA-------APNFLVLDEPTNHLDIE 429 (443)
Q Consensus 379 L~~~gl~~~~~~~~~~~LSgGekq-Rl~lA~al~~-------~p~lLiLDEPTn~LD~~ 429 (443)
++.+.+ ....+.++++ .+..+..++. +|++|+|||||+++|+.
T Consensus 91 ~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~ 141 (231)
T 4a74_A 91 LKHIYV--------ARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSE 141 (231)
T ss_dssp HHTEEE--------EECCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHH
T ss_pred hhcEEE--------EecCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccc
Confidence 222111 1234454433 3455554444 99999999999999984
No 117
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.37 E-value=1.6e-12 Score=123.27 Aligned_cols=142 Identities=15% Similarity=0.101 Sum_probs=92.9
Q ss_pred HHHHHHHccccccCCCCCcceEEecCC---------------ceEEEEecccCCC-CchHHHHHHhccHHHHHHHHHHHH
Q psy208 19 EFYCKALTLHLHLEGGMVSGQLRIPSH---------------ISVLHVEQEVVGD-DTPAIDSVLECDTKRQNLLNREKT 82 (443)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~G~i~~~~~---------------~~i~~l~Q~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~ 82 (443)
++|++.+.|.+.|++ |+|.+... -.|||++|++... ..|+.+.+....
T Consensus 45 STLl~~l~Gl~~p~~----G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~enl~~~~------------ 108 (235)
T 3tif_A 45 STMLNIIGCLDKPTE----GEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPL------------ 108 (235)
T ss_dssp HHHHHHHTTSSCCSE----EEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHH------------
T ss_pred HHHHHHHhcCCCCCc----eEEEECCEEcccCCHHHHHHHhhccEEEEecCCccCCCCcHHHHHHHHH------------
Confidence 566777777766654 99986431 1499999998653 446665543210
Q ss_pred HHHHHhCCCCChhhHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCCChhhhhccCCCCChHHHH----------------
Q psy208 83 ITQAINNGTADANMSTELTQVFAELEAIEADKAPARASVILAGLGFTPEMQKRATKHFSGGWRK---------------- 146 (443)
Q Consensus 83 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~---------------- 146 (443)
....... ....+...++.++|..+|+.+...++++++|||||||
T Consensus 109 ---~~~~~~~-----------------~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral~~~p~lll 168 (235)
T 3tif_A 109 ---IFKYRGA-----------------MSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIIL 168 (235)
T ss_dssp ---HTCSSSC-----------------CCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTCCSEEE
T ss_pred ---HhhhccC-----------------CCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence 0000000 0001123578888999999864458999999999999
Q ss_pred ----------HHHHHHHHHhh----hCCCeEEEEecCHHHHhccCCcEEEEeCCeeEEEcCChhHH
Q psy208 147 ----------MAIIWLENYLQ----NWPTTLLVVSHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAF 198 (443)
Q Consensus 147 ----------~~i~wL~~~L~----~~~~tviiVSHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y 198 (443)
.+...+.+.|+ +.+.|||+||||.+.. .+||+|+.|++|++.. .+...++
T Consensus 169 lDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~-~~~d~i~~l~~G~i~~-~~~~~~~ 232 (235)
T 3tif_A 169 ADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVA-RFGERIIYLKDGEVER-EEKLRGF 232 (235)
T ss_dssp EESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHH-TTSSEEEEEETTEEEE-EEECC--
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHH-HhCCEEEEEECCEEEE-EcChhhh
Confidence 34445555443 3478999999999965 7999999999999964 3444443
No 118
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.37 E-value=3.3e-12 Score=120.28 Aligned_cols=72 Identities=17% Similarity=0.314 Sum_probs=59.6
Q ss_pred HHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------HHHHHHHHHhhh---CCCeEEEEe
Q psy208 117 ARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAIIWLENYLQN---WPTTLLVVS 167 (443)
Q Consensus 117 ~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L~~---~~~tviiVS 167 (443)
.++.++|+.+|+.+ ..++++.+||||||| .+...+.++|++ .+.|||+||
T Consensus 119 ~~~~~~l~~~~l~~-~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vt 197 (224)
T 2pcj_A 119 ERGEYLLSELGLGD-KLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVT 197 (224)
T ss_dssp HHHHHHHHHTTCTT-CTTCCGGGSCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHHHHHcCCch-hhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEc
Confidence 57888999999975 468999999999999 455555555532 378999999
Q ss_pred cCHHHHhccCCcEEEEeCCeeEE
Q psy208 168 HDRHFLDSVPTDIFHLHSQRIDT 190 (443)
Q Consensus 168 HDr~fLd~v~~~i~~l~~g~i~~ 190 (443)
||.+++ .+||+|+.|++|++..
T Consensus 198 Hd~~~~-~~~d~v~~l~~G~i~~ 219 (224)
T 2pcj_A 198 HERELA-ELTHRTLEMKDGKVVG 219 (224)
T ss_dssp SCHHHH-TTSSEEEEEETTEEEE
T ss_pred CCHHHH-HhCCEEEEEECCEEEE
Confidence 999998 8999999999999863
No 119
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.37 E-value=2.1e-12 Score=122.97 Aligned_cols=138 Identities=15% Similarity=0.178 Sum_probs=96.8
Q ss_pred hHHHHHHHccccccCCCCCcceEEecC---------CceEEEEecccCC-CCchHHHHHHhccHHHHHHHHHHHHHHHHH
Q psy208 18 SEFYCKALTLHLHLEGGMVSGQLRIPS---------HISVLHVEQEVVG-DDTPAIDSVLECDTKRQNLLNREKTITQAI 87 (443)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~G~i~~~~---------~~~i~~l~Q~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~ 87 (443)
=++|++.+.|.+.|++ |+|.+.+ .-++||++|++.. ...|+.+.+.-...
T Consensus 37 KSTLl~~l~Gl~~p~~----G~i~~~g~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~---------------- 96 (240)
T 2onk_A 37 KSVFLELIAGIVKPDR----GEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAYGLR---------------- 96 (240)
T ss_dssp HHHHHHHHHTSSCCSE----EEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHTTCT----------------
T ss_pred HHHHHHHHhCCCCCCc----eEEEECCEECCcCchhhCcEEEEcCCCccCCCCcHHHHHHHHHH----------------
Confidence 3567777777776654 8887532 1258999999754 33466554432110
Q ss_pred hCCCCChhhHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCCChhhhhccCCCCChHHHH---------------------
Q psy208 88 NNGTADANMSTELTQVFAELEAIEADKAPARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------- 146 (443)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------- 146 (443)
... . . ..+.++.++|+.+|+.+ ..++++.+|||||||
T Consensus 97 ----~~~--~---~------------~~~~~~~~~l~~~~l~~-~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt 154 (240)
T 2onk_A 97 ----NVE--R---V------------ERDRRVREMAEKLGIAH-LLDRKPARLSGGERQRVALARALVIQPRLLLLDEPL 154 (240)
T ss_dssp ----TSC--H---H------------HHHHHHHHHHHTTTCTT-TTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTT
T ss_pred ----HcC--C---c------------hHHHHHHHHHHHcCCHH-HhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 000 0 0 00347888999999975 468999999999999
Q ss_pred -----HHHHHHHHHhhh----CCCeEEEEecCHHHHhccCCcEEEEeCCeeEEEcCChhHH
Q psy208 147 -----MAIIWLENYLQN----WPTTLLVVSHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAF 198 (443)
Q Consensus 147 -----~~i~wL~~~L~~----~~~tviiVSHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y 198 (443)
.+..++.+.|++ .+.|||+||||.+++..+||+|+.|++|++. +.|+.++.
T Consensus 155 s~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~-~~g~~~~~ 214 (240)
T 2onk_A 155 SAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIV-EKGKLKEL 214 (240)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEE-EEECHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EECCHHHH
Confidence 455566655533 3789999999999999999999999999996 45776654
No 120
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.36 E-value=2.4e-12 Score=129.18 Aligned_cols=80 Identities=20% Similarity=0.169 Sum_probs=66.5
Q ss_pred HHHHHHHHHhCCCChhhhhccCCCCChHHHH------------------------------HHHHHHHHHhhhCCCeEEE
Q psy208 116 PARASVILAGLGFTPEMQKRATKHFSGGWRK------------------------------MAIIWLENYLQNWPTTLLV 165 (443)
Q Consensus 116 ~~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~------------------------------~~i~wL~~~L~~~~~tvii 165 (443)
..|+.++|+.+|+.+ ..++++.+||||||| ..+..|.+.+++.+.|+|+
T Consensus 116 ~~~v~~~l~~~gL~~-~~~r~~~~LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~ 194 (359)
T 3fvq_A 116 RQRIEAMLELTGISE-LAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVF 194 (359)
T ss_dssp HHHHHHHHHHHTCGG-GTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHcCCch-HhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 458899999999975 578999999999999 2223456666677899999
Q ss_pred EecCHHHHhccCCcEEEEeCCeeEEEcCChhH
Q psy208 166 VSHDRHFLDSVPTDIFHLHSQRIDTYRGNYEA 197 (443)
Q Consensus 166 VSHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~ 197 (443)
||||.+.+..+||||++|++|++.. .|...+
T Consensus 195 vTHd~~ea~~~aDri~vl~~G~i~~-~g~~~e 225 (359)
T 3fvq_A 195 VSHDREEALQYADRIAVMKQGRILQ-TASPHE 225 (359)
T ss_dssp ECCCHHHHHHHCSEEEEEETTEEEE-EECHHH
T ss_pred EeCCHHHHHHHCCEEEEEECCEEEE-EeCHHH
Confidence 9999999999999999999999974 577654
No 121
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.36 E-value=4.4e-12 Score=122.55 Aligned_cols=139 Identities=13% Similarity=0.079 Sum_probs=94.9
Q ss_pred HHHHHHHccccccCCCCCcceEEecCC--------ceEEEEeccc--CCCCchHHHHHHhccHHHHHHHHHHHHHHHHHh
Q psy208 19 EFYCKALTLHLHLEGGMVSGQLRIPSH--------ISVLHVEQEV--VGDDTPAIDSVLECDTKRQNLLNREKTITQAIN 88 (443)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~G~i~~~~~--------~~i~~l~Q~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~ 88 (443)
++|++.+.|.+.|+ +|+|.+... -.+||++|++ .....|+.+.+.-...
T Consensus 47 STLl~~i~Gl~~p~----~G~I~~~g~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~----------------- 105 (266)
T 2yz2_A 47 STLLQIVAGLIEPT----SGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVK----------------- 105 (266)
T ss_dssp HHHHHHHTTSSCCS----EEEEEETTEECCHHHHGGGEEEECSSGGGGCCCSSHHHHHHHTTT-----------------
T ss_pred HHHHHHHhCCCCCC----CcEEEECCEECchHHhhhhEEEEeccchhhcCCCcHHHHHHHHHH-----------------
Confidence 45666666665554 599987431 2499999985 2334455544321100
Q ss_pred CCCCChhhHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCCCh-hhhhccCCCCChHHHH---------------------
Q psy208 89 NGTADANMSTELTQVFAELEAIEADKAPARASVILAGLGFTP-EMQKRATKHFSGGWRK--------------------- 146 (443)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~~~L~~lgl~~-~~~~~~~~~LSGGqr~--------------------- 146 (443)
.. ....+.+.++..+|..+|+.. ...++++.+|||||||
T Consensus 106 -----------------~~--~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPt 166 (266)
T 2yz2_A 106 -----------------NF--YPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPL 166 (266)
T ss_dssp -----------------TT--CTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTT
T ss_pred -----------------hc--CCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCcc
Confidence 00 011233467889999999982 3468999999999999
Q ss_pred -----HHHHHHHHHhhh---CCCeEEEEecCHHHHhccCCcEEEEeCCeeEEEcCChhHH
Q psy208 147 -----MAIIWLENYLQN---WPTTLLVVSHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAF 198 (443)
Q Consensus 147 -----~~i~wL~~~L~~---~~~tviiVSHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y 198 (443)
.+...+.+.|++ .+.|||+||||.+++..+||+|+.|++|++. +.|+..+.
T Consensus 167 s~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~~~~d~v~~l~~G~i~-~~g~~~~~ 225 (266)
T 2yz2_A 167 VGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKV-FDGTRMEF 225 (266)
T ss_dssp TTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTGGGCSEEEEEETTEEE-EEEEHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EeCCHHHH
Confidence 455555555533 3789999999999999999999999999986 45766544
No 122
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.36 E-value=3.6e-12 Score=128.86 Aligned_cols=138 Identities=17% Similarity=0.145 Sum_probs=93.6
Q ss_pred HHHHHHHccccccCCCCCcceEEecC---------CceEEEEecccCC-CCchHHHHHHhccHHHHHHHHHHHHHHHHHh
Q psy208 19 EFYCKALTLHLHLEGGMVSGQLRIPS---------HISVLHVEQEVVG-DDTPAIDSVLECDTKRQNLLNREKTITQAIN 88 (443)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~G~i~~~~---------~~~i~~l~Q~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~ 88 (443)
++|.+.|.|...| ++|+|.+.. .-.|||++|++.. ...|+.+.+.-+. .+.
T Consensus 43 STLLr~iaGl~~p----~~G~I~i~G~~~~~~~~~~r~ig~VfQ~~~l~p~ltV~eni~~~~---------------~~~ 103 (381)
T 3rlf_A 43 STLLRMIAGLETI----TSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGL---------------KLA 103 (381)
T ss_dssp HHHHHHHHTSSCC----SEEEEEETTEECTTCCGGGSCEEEECTTCCCCTTSCHHHHHTHHH---------------HHT
T ss_pred HHHHHHHHcCCCC----CCeEEEECCEECCCCCHHHCCEEEEecCCcCCCCCCHHHHHHHHH---------------HHc
Confidence 3444444444444 558987531 1359999999865 4456665543210 000
Q ss_pred CCCCChhhHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCCChhhhhccCCCCChHHHH----------------------
Q psy208 89 NGTADANMSTELTQVFAELEAIEADKAPARASVILAGLGFTPEMQKRATKHFSGGWRK---------------------- 146 (443)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~---------------------- 146 (443)
.....+.+.|+.++|+.+|+.+ ..++++++|||||||
T Consensus 104 --------------------~~~~~~~~~~v~~~l~~~~L~~-~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPts 162 (381)
T 3rlf_A 104 --------------------GAKKEVINQRVNQVAEVLQLAH-LLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLS 162 (381)
T ss_dssp --------------------TCCHHHHHHHHHHHHHHTTCGG-GTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEESTTT
T ss_pred --------------------CCCHHHHHHHHHHHHHHcCCch-hhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEECCCc
Confidence 0111123468999999999985 578999999999999
Q ss_pred ----HHHH----HHHHHhhhCCCeEEEEecCHHHHhccCCcEEEEeCCeeEEEcCChhH
Q psy208 147 ----MAII----WLENYLQNWPTTLLVVSHDRHFLDSVPTDIFHLHSQRIDTYRGNYEA 197 (443)
Q Consensus 147 ----~~i~----wL~~~L~~~~~tviiVSHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~ 197 (443)
.... .|.++.++.+.|+|+||||.+++..+||+|++|++|++... |...+
T Consensus 163 ~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~~-g~~~~ 220 (381)
T 3rlf_A 163 NLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQV-GKPLE 220 (381)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEEE-ECHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEE-eCHHH
Confidence 2333 33333345689999999999999999999999999999754 66544
No 123
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.36 E-value=5.1e-14 Score=144.18 Aligned_cols=155 Identities=14% Similarity=0.100 Sum_probs=91.1
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCE--EEEECCCCCcHHHHHHHHHcCCCCCCceEEE--c---CceEEEEeccC
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESR--ICIVGDNGAGKTTLLKIIMGIISPTAGTRTV--H---RNLKFGYFSQH 348 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~--i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~--~---~~~~ig~~~Q~ 348 (443)
.|++++ +++|+ +.+ |+++||+|.+|++ ++|+||||||||||+++|+|+.- .|.... . ....++|++|+
T Consensus 16 ~l~~~~-~~~y~-~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l--~g~~~~~~~~~~~~~~i~~v~Q~ 90 (427)
T 2qag_B 16 TVPLAG-HVGFD-SLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF--EGEPATHTQPGVQLQSNTYDLQE 90 (427)
T ss_dssp -CCCCC-CC-CC---C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC---------CCSSCEEEEEEEEEEC
T ss_pred eEEEee-EEEEC-Cee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccc--cCCcCCCCCccceEeeEEEEeec
Confidence 467777 88895 456 9999999999999 99999999999999999999842 121110 0 01258888887
Q ss_pred cccccccchhHHHHHHHhCC-----------CCCHHHHHHHHhcC-CCCh---hhhhccC-----------CCCCHHHHH
Q psy208 349 HVDQLDMNLRCVQLLEAAFP-----------GKPQEEYRRQLGGF-GVSG---DLALQFV-----------GSLSGGQKS 402 (443)
Q Consensus 349 ~~~~l~~~~~~~~~~~~~~~-----------~~~~~~~~~~L~~~-gl~~---~~~~~~~-----------~~LSgGekq 402 (443)
+.. ....++.+.+..... ......+..+|... ++.. ...+.++ ..|+...
T Consensus 91 ~~l--~~~ltv~D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D-- 166 (427)
T 2qag_B 91 SNV--RLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD-- 166 (427)
T ss_dssp --C--EEEEEEEEEECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH--
T ss_pred Ccc--ccccchhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH--
Confidence 421 111111111100000 00012334445443 3321 0011111 2466555
Q ss_pred HHHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHcc
Q psy208 403 RVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINK 440 (443)
Q Consensus 403 Rl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~ 440 (443)
+.++++|..+++++++|+||..|.+.....+.+.+.+
T Consensus 167 -ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~ 203 (427)
T 2qag_B 167 -LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITS 203 (427)
T ss_dssp -HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHH
T ss_pred -HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHH
Confidence 7899999999999999999999999888888777764
No 124
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.35 E-value=8.9e-14 Score=140.25 Aligned_cols=104 Identities=20% Similarity=0.228 Sum_probs=76.9
Q ss_pred EEeeeEEE---eCC-CCcee---------eeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCce----
Q psy208 278 QLSEVNFE---YVP-GKPIL---------TNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNL---- 340 (443)
Q Consensus 278 ~~~~l~~~---y~~-~~~il---------~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~---- 340 (443)
++++++|+ |++ +.++| +++||.|.+|+.++|+||||||||||+++|+|+++|++|.|.+.+..
T Consensus 137 ~f~~v~f~~~~Y~~~~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~~~ 216 (361)
T 2gza_A 137 FFKHVRPMSKSLTPFEQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPELFL 216 (361)
T ss_dssp TTSCCCCSCSCCCHHHHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCCCC
T ss_pred CcCccccccccccchhHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccccCc
Confidence 67888888 742 12455 99999999999999999999999999999999999999999886421
Q ss_pred -----EEEEec-cCcccccccchhHHHHHHHhCCCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCC
Q psy208 341 -----KFGYFS-QHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAP 414 (443)
Q Consensus 341 -----~ig~~~-Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p 414 (443)
.++|++ |+.. ..++++...+-.|+.++...|
T Consensus 217 ~~~~~~v~~v~~q~~~-------------------------------------------~~~~~~~t~~~~i~~~l~~~p 253 (361)
T 2gza_A 217 PDHPNHVHLFYPSEAK-------------------------------------------EEENAPVTAATLLRSCLRMKP 253 (361)
T ss_dssp TTCSSEEEEECC-----------------------------------------------------CCHHHHHHHHTTSCC
T ss_pred cccCCEEEEeecCccc-------------------------------------------cccccccCHHHHHHHHHhcCC
Confidence 122222 1100 011344457888899999999
Q ss_pred CeEEEeCCCC
Q psy208 415 NFLVLDEPTN 424 (443)
Q Consensus 415 ~lLiLDEPTn 424 (443)
+.+++|||+.
T Consensus 254 d~~l~~e~r~ 263 (361)
T 2gza_A 254 TRILLAELRG 263 (361)
T ss_dssp SEEEESCCCS
T ss_pred CEEEEcCchH
Confidence 9999999985
No 125
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.35 E-value=5.5e-12 Score=126.56 Aligned_cols=81 Identities=21% Similarity=0.283 Sum_probs=65.3
Q ss_pred HHHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------HHHHHHHHHh----hhCCCeEEE
Q psy208 116 PARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAIIWLENYL----QNWPTTLLV 165 (443)
Q Consensus 116 ~~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L----~~~~~tvii 165 (443)
+.++.++|+.+|+.+ ..++++++||||||| .....+.++| ++.+.|+|+
T Consensus 123 ~~~v~~~l~~~gL~~-~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~ 201 (355)
T 1z47_A 123 DARVRELLRFMRLES-YANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVF 201 (355)
T ss_dssp HHHHHHHHHHTTCGG-GTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHHHcCChh-HhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 457899999999975 568999999999999 3444444444 445889999
Q ss_pred EecCHHHHhccCCcEEEEeCCeeEEEcCChhHH
Q psy208 166 VSHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAF 198 (443)
Q Consensus 166 VSHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y 198 (443)
||||.+++..+||+|+.|++|++.. .|+.++.
T Consensus 202 vTHd~~~a~~~adri~vl~~G~i~~-~g~~~~l 233 (355)
T 1z47_A 202 VTHDQEEALEVADRVLVLHEGNVEQ-FGTPEEV 233 (355)
T ss_dssp ECSCHHHHHHHCSEEEEEETTEEEE-EECHHHH
T ss_pred ECCCHHHHHHhCCEEEEEECCEEEE-EcCHHHH
Confidence 9999999999999999999999974 4776543
No 126
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.35 E-value=5.2e-12 Score=127.08 Aligned_cols=80 Identities=16% Similarity=0.170 Sum_probs=64.5
Q ss_pred HHHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------HHHHHHHHHh----hhCCCeEEE
Q psy208 116 PARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAIIWLENYL----QNWPTTLLV 165 (443)
Q Consensus 116 ~~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L----~~~~~tvii 165 (443)
..|+.++|+.+|+.+ ..++++++||||||| .....+.+.| ++.+.|+|+
T Consensus 111 ~~~v~~~l~~~~L~~-~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~ 189 (362)
T 2it1_A 111 DKKVREVAKMLHIDK-LLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVY 189 (362)
T ss_dssp HHHHHHHHHHTTCTT-CTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHHHcCCch-HhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 457899999999985 468999999999999 3333343333 445889999
Q ss_pred EecCHHHHhccCCcEEEEeCCeeEEEcCChhH
Q psy208 166 VSHDRHFLDSVPTDIFHLHSQRIDTYRGNYEA 197 (443)
Q Consensus 166 VSHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~ 197 (443)
||||.+++..+||+|+.|++|++.. .|+..+
T Consensus 190 vTHd~~~a~~~adri~vl~~G~i~~-~g~~~~ 220 (362)
T 2it1_A 190 VTHDQAEALAMADRIAVIREGEILQ-VGTPDE 220 (362)
T ss_dssp EESCHHHHHHHCSEEEEEETTEEEE-EECHHH
T ss_pred ECCCHHHHHHhCCEEEEEECCEEEE-EcCHHH
Confidence 9999999999999999999999975 466544
No 127
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.34 E-value=3.4e-15 Score=149.32 Aligned_cols=159 Identities=13% Similarity=0.129 Sum_probs=104.9
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcC---------------ce
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR---------------NL 340 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~---------------~~ 340 (443)
+|+++++++.|+ ...+++++||++.+|++++|+|+||||||||+++|+|++.|++|+|.+.. ..
T Consensus 29 ~ie~~~~~~~~~-~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~ 107 (337)
T 2qm8_A 29 LAESRRADHRAA-VRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKT 107 (337)
T ss_dssp HHTCSSHHHHHH-HHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGG
T ss_pred HHeeCCcccccC-hHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhh
Confidence 467788888884 46799999999999999999999999999999999999999999987632 12
Q ss_pred EEEEeccCcccccccc----------hhHHHHH-------------------------HHh-------C-CCCCHH----
Q psy208 341 KFGYFSQHHVDQLDMN----------LRCVQLL-------------------------EAA-------F-PGKPQE---- 373 (443)
Q Consensus 341 ~ig~~~Q~~~~~l~~~----------~~~~~~~-------------------------~~~-------~-~~~~~~---- 373 (443)
.++|++|++....... ....+.+ ... . +...+.
T Consensus 108 ~i~~v~q~~~~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~~~~~~~i 187 (337)
T 2qm8_A 108 RMARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGAGDELQGI 187 (337)
T ss_dssp GSTTGGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC------C
T ss_pred hheeeccCcccccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCCCcccHHHH
Confidence 3567777643211100 0011110 000 0 000000
Q ss_pred --HHHHHHhcCCCChhhhhc-cCCCCCHHHHHHHHHHHHhcc------CCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 374 --EYRRQLGGFGVSGDLALQ-FVGSLSGGQKSRVAFARMCMA------APNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 374 --~~~~~L~~~gl~~~~~~~-~~~~LSgGekqRl~lA~al~~------~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
.+......+.++ ..+. +...+|+|+++++..|++++. .|+++. ||++|...++.|.+.|.++
T Consensus 188 ~~~i~~~~~ivvlN--K~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~ 258 (337)
T 2qm8_A 188 KKGIFELADMIAVN--KADDGDGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDH 258 (337)
T ss_dssp CTTHHHHCSEEEEE--CCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHH
T ss_pred HHHHhccccEEEEE--chhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHH
Confidence 011111122221 1221 234689999999999999887 588775 9999999999999988653
No 128
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.34 E-value=6.1e-12 Score=126.28 Aligned_cols=80 Identities=20% Similarity=0.188 Sum_probs=64.5
Q ss_pred HHHHHHHHHhCCCChhhhhccCCCCChHHHH------------------------------HHHHHHHHHhhhCCCeEEE
Q psy208 116 PARASVILAGLGFTPEMQKRATKHFSGGWRK------------------------------MAIIWLENYLQNWPTTLLV 165 (443)
Q Consensus 116 ~~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~------------------------------~~i~wL~~~L~~~~~tvii 165 (443)
+.++.++|+.+|+.+ ..++++++||||||| .-+.+|.++.++.+.|+|+
T Consensus 118 ~~~v~~~l~~~~L~~-~~~~~~~~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~ 196 (353)
T 1oxx_K 118 RKRVEEVAKILDIHH-VLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLV 196 (353)
T ss_dssp HHHHHHHHHHTTCGG-GTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEE
T ss_pred HHHHHHHHHHcCCch-HhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 457899999999975 568999999999999 2333344433456889999
Q ss_pred EecCHHHHhccCCcEEEEeCCeeEEEcCChhH
Q psy208 166 VSHDRHFLDSVPTDIFHLHSQRIDTYRGNYEA 197 (443)
Q Consensus 166 VSHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~ 197 (443)
||||.+++..+||+|+.|++|++.. .|+..+
T Consensus 197 vTHd~~~~~~~adri~vl~~G~i~~-~g~~~~ 227 (353)
T 1oxx_K 197 VSHDPADIFAIADRVGVLVKGKLVQ-VGKPED 227 (353)
T ss_dssp EESCHHHHHHHCSEEEEEETTEEEE-EECHHH
T ss_pred EeCCHHHHHHhCCEEEEEECCEEEE-EcCHHH
Confidence 9999999999999999999999974 466544
No 129
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.33 E-value=3.1e-15 Score=153.50 Aligned_cols=135 Identities=13% Similarity=0.086 Sum_probs=91.9
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-e--------------
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-L-------------- 340 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-~-------------- 340 (443)
+++++++++.|+ ...+|+++ +. .+|++++|+|||||||||||++|+|+++|++|.|.+... .
T Consensus 143 ~~~l~~Lg~~~~-~~~~L~~l-~~-~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~ 219 (418)
T 1p9r_A 143 RLDLHSLGMTAH-NHDNFRRL-IK-RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNP 219 (418)
T ss_dssp CCCGGGSCCCHH-HHHHHHHH-HT-SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBG
T ss_pred CCCHHHcCCCHH-HHHHHHHH-HH-hcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEcc
Confidence 467778877773 35688888 53 899999999999999999999999999999999876321 0
Q ss_pred EEEEec---------cCcccccccc----hhHHHHHHHhC---------CCCCHHHHHHHHhcCCCChhhhhccCCCCCH
Q psy208 341 KFGYFS---------QHHVDQLDMN----LRCVQLLEAAF---------PGKPQEEYRRQLGGFGVSGDLALQFVGSLSG 398 (443)
Q Consensus 341 ~ig~~~---------Q~~~~~l~~~----~~~~~~~~~~~---------~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSg 398 (443)
.+++.+ |++...+... .++.+.+.... .......+...|..+|+... ..+..|||
T Consensus 220 ~~g~~f~~~lr~~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~~i~rL~~lgl~~~---~~~~~LSg 296 (418)
T 1p9r_A 220 RVDMTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAVTRLRDMGIEPF---LISSSLLG 296 (418)
T ss_dssp GGTBCHHHHHHHHGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHHTCCHH---HHHHHEEE
T ss_pred ccCcCHHHHHHHHhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHHHHHHHHHcCCcHH---HHHHHHHH
Confidence 122322 5543211111 34444443211 11122344456777888642 36789999
Q ss_pred HHHHHHHHHHHhccCCCeEE
Q psy208 399 GQKSRVAFARMCMAAPNFLV 418 (443)
Q Consensus 399 GekqRl~lA~al~~~p~lLi 418 (443)
||+|| ||++++.+|+++.
T Consensus 297 g~~QR--LaraL~~~p~~~~ 314 (418)
T 1p9r_A 297 VLAQR--LVRTLCPDCKEPY 314 (418)
T ss_dssp EEEEE--EEEEECTTTCEEE
T ss_pred HHHHH--hhhhhcCCCCccC
Confidence 99999 8999999999875
No 130
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.32 E-value=8.2e-12 Score=126.18 Aligned_cols=81 Identities=20% Similarity=0.271 Sum_probs=64.8
Q ss_pred HHHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------HHHHHHHHHh----hhCCCeEEE
Q psy208 116 PARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAIIWLENYL----QNWPTTLLV 165 (443)
Q Consensus 116 ~~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L----~~~~~tvii 165 (443)
+.|+.++|+.+|+.+ ..++++++||||||| .....+.+.| ++.+.|+|+
T Consensus 117 ~~~v~~~l~~~~L~~-~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~ 195 (372)
T 1g29_1 117 DQRVREVAELLGLTE-LLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIY 195 (372)
T ss_dssp HHHHHHHHHHHTCGG-GTTCCGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHHHCCCch-HhcCCcccCCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 457889999999975 468999999999999 3333333333 445889999
Q ss_pred EecCHHHHhccCCcEEEEeCCeeEEEcCChhHH
Q psy208 166 VSHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAF 198 (443)
Q Consensus 166 VSHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y 198 (443)
||||.+++..+||+|+.|++|++.. .|+..+.
T Consensus 196 vTHd~~~a~~~adri~vl~~G~i~~-~g~~~~l 227 (372)
T 1g29_1 196 VTHDQVEAMTMGDRIAVMNRGVLQQ-VGSPDEV 227 (372)
T ss_dssp EESCHHHHHHHCSEEEEEETTEEEE-EECHHHH
T ss_pred ECCCHHHHHHhCCEEEEEeCCEEEE-eCCHHHH
Confidence 9999999999999999999999974 4776543
No 131
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.32 E-value=5.1e-12 Score=127.04 Aligned_cols=80 Identities=18% Similarity=0.206 Sum_probs=64.9
Q ss_pred HHHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------HHHHHHHHHh----hhCCCeEEE
Q psy208 116 PARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAIIWLENYL----QNWPTTLLV 165 (443)
Q Consensus 116 ~~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L----~~~~~tvii 165 (443)
+.|+.++|+.+|+.+ ..++++++||||||| .....+.+.| ++.+.|+|+
T Consensus 111 ~~~v~~~l~~~~L~~-~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~ 189 (359)
T 2yyz_A 111 EKRVVEIARKLLIDN-LLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVY 189 (359)
T ss_dssp THHHHHHHHHTTCGG-GTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEE
T ss_pred HHHHHHHHHHcCCch-HhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 357899999999975 568999999999999 3444444444 445889999
Q ss_pred EecCHHHHhccCCcEEEEeCCeeEEEcCChhH
Q psy208 166 VSHDRHFLDSVPTDIFHLHSQRIDTYRGNYEA 197 (443)
Q Consensus 166 VSHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~ 197 (443)
||||.+++..+||+|+.|++|++.. .|+..+
T Consensus 190 vTHd~~~~~~~adri~vl~~G~i~~-~g~~~~ 220 (359)
T 2yyz_A 190 VTHDQAEAMTMASRIAVFNQGKLVQ-YGTPDE 220 (359)
T ss_dssp EESCHHHHHHHCSEEEEEETTEEEE-EECHHH
T ss_pred EcCCHHHHHHhCCEEEEEECCEEEE-eCCHHH
Confidence 9999999999999999999999974 476554
No 132
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.32 E-value=5.6e-12 Score=127.28 Aligned_cols=80 Identities=18% Similarity=0.167 Sum_probs=64.7
Q ss_pred HHHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------HHHHHHHHHh----hhCCCeEEE
Q psy208 116 PARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAIIWLENYL----QNWPTTLLV 165 (443)
Q Consensus 116 ~~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L----~~~~~tvii 165 (443)
..|+.++|+.+|+.+ ..++++++||||||| .....+.+.| ++.+.|+|+
T Consensus 119 ~~~v~~~l~~~~L~~-~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~ 197 (372)
T 1v43_A 119 DKRVRWAAELLQIEE-LLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIY 197 (372)
T ss_dssp HHHHHHHHHHTTCGG-GTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHHHcCChh-HhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 357899999999975 568999999999999 3444444444 445889999
Q ss_pred EecCHHHHhccCCcEEEEeCCeeEEEcCChhH
Q psy208 166 VSHDRHFLDSVPTDIFHLHSQRIDTYRGNYEA 197 (443)
Q Consensus 166 VSHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~ 197 (443)
||||.+++..+||+|+.|++|++.. .|+..+
T Consensus 198 vTHd~~~a~~~adri~vl~~G~i~~-~g~~~~ 228 (372)
T 1v43_A 198 VTHDQVEAMTMGDRIAVMNRGQLLQ-IGSPTE 228 (372)
T ss_dssp EESCHHHHHHHCSEEEEEETTEEEE-EECHHH
T ss_pred EeCCHHHHHHhCCEEEEEECCEEEE-eCCHHH
Confidence 9999999999999999999999974 466554
No 133
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.31 E-value=1.5e-12 Score=130.75 Aligned_cols=120 Identities=20% Similarity=0.221 Sum_probs=74.2
Q ss_pred ceeeee-eEEEeCCCEEEEECCCCCcHHHHHHHHHcCC--CCCCceEEEcCceEEEEeccCcccccccchhHHHHHHHhC
Q psy208 291 PILTNV-CLGATLESRICIVGDNGAGKTTLLKIIMGII--SPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEAAF 367 (443)
Q Consensus 291 ~il~~v-sl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~--~p~~G~i~~~~~~~ig~~~Q~~~~~l~~~~~~~~~~~~~~ 367 (443)
+.|+.+ ++.|++|++++|+||||||||||++.|++.. +|++|.. ...+-|+.-+.. +.. .. +..+...+
T Consensus 118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~----~G~vi~i~~e~~--~~~-~~-i~~i~q~~ 189 (349)
T 1pzn_A 118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGL----NGSVIWIDTENT--FRP-ER-IREIAQNR 189 (349)
T ss_dssp HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSC----SCEEEEEESSSC--CCH-HH-HHHHHHTT
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCC----CCeEEEEeCCCC--CCH-HH-HHHHHHHc
Confidence 345554 6889999999999999999999999999998 6776310 011223332211 110 01 11111111
Q ss_pred CCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhc-------cCCCeEEEeCCCCCCCHH
Q psy208 368 PGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCM-------AAPNFLVLDEPTNHLDIE 429 (443)
Q Consensus 368 ~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~-------~~p~lLiLDEPTn~LD~~ 429 (443)
..... .++..+-+. . ..-|.++++++.+++.++ .+|++||+||||+++|+.
T Consensus 190 -~~~~~---~v~~ni~~~-----~--~~~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~ 247 (349)
T 1pzn_A 190 -GLDPD---EVLKHIYVA-----R--AFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSE 247 (349)
T ss_dssp -TCCHH---HHGGGEEEE-----E--CCSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHH
T ss_pred -CCCHH---HHhhCEEEE-----e--cCChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhh
Confidence 11111 222221110 0 012678999999999988 689999999999999986
No 134
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.31 E-value=1.8e-14 Score=128.69 Aligned_cols=59 Identities=22% Similarity=0.124 Sum_probs=51.6
Q ss_pred EEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcC
Q psy208 278 QLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR 338 (443)
Q Consensus 278 ~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~ 338 (443)
..+++++.|+ ++.+++++||+|.+|++++|+||||||||||+|+|+|++ |++|+|.+.+
T Consensus 9 ~~~~~~~~~g-~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g 67 (158)
T 1htw_A 9 PDEFSMLRFG-KKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPT 67 (158)
T ss_dssp CSHHHHHHHH-HHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCT
T ss_pred CCHHHHHHHH-HHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECC
Confidence 3456677784 467999999999999999999999999999999999999 9999987643
No 135
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.31 E-value=1.2e-11 Score=123.74 Aligned_cols=79 Identities=18% Similarity=0.152 Sum_probs=64.1
Q ss_pred HHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------HHHHHHHHHh----hhCCCeEEEE
Q psy208 117 ARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAIIWLENYL----QNWPTTLLVV 166 (443)
Q Consensus 117 ~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L----~~~~~tviiV 166 (443)
.++.++|+.+|+.+ ..++++++||||||| .....+.++| ++.+.|+|+|
T Consensus 106 ~~v~~~l~~~~L~~-~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~v 184 (348)
T 3d31_A 106 KRVLDTARDLKIEH-LLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHI 184 (348)
T ss_dssp HHHHHHHHHTTCTT-TTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHcCCch-HhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 57899999999985 468999999999999 3333343333 4568899999
Q ss_pred ecCHHHHhccCCcEEEEeCCeeEEEcCChhH
Q psy208 167 SHDRHFLDSVPTDIFHLHSQRIDTYRGNYEA 197 (443)
Q Consensus 167 SHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~ 197 (443)
|||.+++..+||+|+.|++|++.. .|+..+
T Consensus 185 THd~~~~~~~adri~vl~~G~i~~-~g~~~~ 214 (348)
T 3d31_A 185 THDQTEARIMADRIAVVMDGKLIQ-VGKPEE 214 (348)
T ss_dssp ESCHHHHHHHCSEEEEESSSCEEE-EECHHH
T ss_pred eCCHHHHHHhCCEEEEEECCEEEE-ECCHHH
Confidence 999999999999999999999975 466554
No 136
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.31 E-value=4.7e-12 Score=121.68 Aligned_cols=80 Identities=20% Similarity=0.177 Sum_probs=65.4
Q ss_pred HHHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------HHHHHHHHHhhh---CCCeEEEE
Q psy208 116 PARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAIIWLENYLQN---WPTTLLVV 166 (443)
Q Consensus 116 ~~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L~~---~~~tviiV 166 (443)
..++.++|..+|+.+ ..++++.+||||||| .+...+.+.|++ .+.|||+|
T Consensus 131 ~~~~~~~l~~~~l~~-~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~v 209 (257)
T 1g6h_A 131 VEKAFKILEFLKLSH-LYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLII 209 (257)
T ss_dssp HHHHHHHHHHTTCGG-GTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHcCCch-hhCCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 457889999999974 468999999999999 455555555533 37899999
Q ss_pred ecCHHHHhccCCcEEEEeCCeeEEEcCChhH
Q psy208 167 SHDRHFLDSVPTDIFHLHSQRIDTYRGNYEA 197 (443)
Q Consensus 167 SHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~ 197 (443)
|||.+++..+||+|+.|++|++. +.|+.++
T Consensus 210 tHd~~~~~~~~d~v~~l~~G~i~-~~g~~~~ 239 (257)
T 1g6h_A 210 EHRLDIVLNYIDHLYVMFNGQII-AEGRGEE 239 (257)
T ss_dssp CSCCSTTGGGCSEEEEEETTEEE-EEEESHH
T ss_pred ecCHHHHHHhCCEEEEEECCEEE-EEeCHHH
Confidence 99999999999999999999986 4566655
No 137
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.30 E-value=5.6e-13 Score=134.90 Aligned_cols=97 Identities=22% Similarity=0.298 Sum_probs=69.8
Q ss_pred ceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCC-CceEEEcC-ce------EEEEeccCcccccccchhHHHH
Q psy208 291 PILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPT-AGTRTVHR-NL------KFGYFSQHHVDQLDMNLRCVQL 362 (443)
Q Consensus 291 ~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~-~G~i~~~~-~~------~ig~~~Q~~~~~l~~~~~~~~~ 362 (443)
++|++++ +.+|+.++|+||||||||||+++|+|+++|+ +|.|.... .. .++|++|.
T Consensus 126 ~~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~-------------- 189 (372)
T 2ewv_A 126 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQR-------------- 189 (372)
T ss_dssp SSHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEE--------------
T ss_pred HHHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEee--------------
Confidence 3677665 7899999999999999999999999999998 89885421 11 01111110
Q ss_pred HHHhCCCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHH
Q psy208 363 LEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKA 437 (443)
Q Consensus 363 ~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~ 437 (443)
.+|+. +..+ +.+|+.+|..+|++||+|||| |.++...+.++
T Consensus 190 ------------------~~g~~-------~~~~------~~~l~~~L~~~pd~illdE~~---d~e~~~~~l~~ 230 (372)
T 2ewv_A 190 ------------------EVGED-------TKSF------ADALRAALREDPDVIFVGEMR---DLETVETALRA 230 (372)
T ss_dssp ------------------EBTTT-------BSCS------HHHHHHHTTSCCSEEEESCCC---SHHHHHHHHHH
T ss_pred ------------------ecCCC-------HHHH------HHHHHHHhhhCcCEEEECCCC---CHHHHHHHHHH
Confidence 12221 2344 469999999999999999999 88776654444
No 138
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.30 E-value=2.1e-12 Score=129.58 Aligned_cols=112 Identities=13% Similarity=0.053 Sum_probs=77.2
Q ss_pred eeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCC-CCCceEEEc--------CceEEEEeccCcccccccchhHHHH
Q psy208 292 ILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIIS-PTAGTRTVH--------RNLKFGYFSQHHVDQLDMNLRCVQL 362 (443)
Q Consensus 292 il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~-p~~G~i~~~--------~~~~ig~~~Q~~~~~l~~~~~~~~~ 362 (443)
-++++++. .+|++++|+||||||||||+|+|+|... |++|+|... ....+++++|+.. +..+.++.++
T Consensus 205 gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt~~~~i~~v~q~~~--l~dtpgv~e~ 281 (358)
T 2rcn_A 205 GLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARLYHFPHGGD--VIDSPGVREF 281 (358)
T ss_dssp THHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-------------CCCEEEECTTSCE--EEECHHHHTC
T ss_pred CHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccceEEEEEEEECCCCE--ecCcccHHHh
Confidence 35566654 4799999999999999999999999999 999998753 1346899998752 3333343331
Q ss_pred HHHhCCCCCHHH----HHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhc
Q psy208 363 LEAAFPGKPQEE----YRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCM 411 (443)
Q Consensus 363 ~~~~~~~~~~~~----~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~ 411 (443)
........+ +.+++..+++. ...+.++..|| ||+||++||++++
T Consensus 282 ---~l~~l~~~e~~~~~~e~l~~~gl~-~f~~~~~~~lS-G~~~r~ala~gli 329 (358)
T 2rcn_A 282 ---GLWHLEPEQITQGFVEFHDYLGHC-KYRDCKHDADP-GCAIREAVENGAI 329 (358)
T ss_dssp ---CCCCCCHHHHHHTSGGGGGGTTCS-SSTTCCSSSCT-TCHHHHHHHHTSS
T ss_pred ---hhcCCCHHHHHHHHHHHHHHcCCc-hhcCCCcccCC-HHHHHHHHHhcCC
Confidence 111223333 34566777775 46788999999 9999999999864
No 139
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.29 E-value=6.8e-12 Score=122.03 Aligned_cols=80 Identities=20% Similarity=0.175 Sum_probs=66.4
Q ss_pred HHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------HHHHHHHHHhhhC---CCeE--EE
Q psy208 117 ARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAIIWLENYLQNW---PTTL--LV 165 (443)
Q Consensus 117 ~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L~~~---~~tv--ii 165 (443)
.++.++|..+|+.+ ..++++.+||||||| .+..++.++|+++ +.|| |+
T Consensus 140 ~~~~~~l~~~gl~~-~~~~~~~~LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~ii 218 (279)
T 2ihy_A 140 NEAHQLLKLVGMSA-KAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIY 218 (279)
T ss_dssp HHHHHHHHHTTCGG-GTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEE
T ss_pred HHHHHHHHHcCChh-HhcCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEE
Confidence 47888999999974 468999999999999 5666666666433 6799 99
Q ss_pred EecCHHHHhccCCcEEEEeCCeeEEEcCChhHH
Q psy208 166 VSHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAF 198 (443)
Q Consensus 166 VSHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y 198 (443)
||||.+++..+||+|+.|++|++. +.|+.+++
T Consensus 219 vtHd~~~~~~~~d~v~~l~~G~i~-~~g~~~~~ 250 (279)
T 2ihy_A 219 VTHFIEEITANFSKILLLKDGQSI-QQGAVEDI 250 (279)
T ss_dssp EESCGGGCCTTCCEEEEEETTEEE-EEEEHHHH
T ss_pred EecCHHHHHHhCCEEEEEECCEEE-EECCHHHH
Confidence 999999999999999999999986 45776654
No 140
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.27 E-value=4.5e-11 Score=115.46 Aligned_cols=82 Identities=17% Similarity=0.178 Sum_probs=64.5
Q ss_pred HHHHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------------HHHHHHHHHhh----h
Q psy208 115 APARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------------MAIIWLENYLQ----N 158 (443)
Q Consensus 115 ~~~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------------~~i~wL~~~L~----~ 158 (443)
...++.++|+.+|+.+ ..++++.+||||||| .+...+.+.|+ +
T Consensus 118 ~~~~~~~~l~~~~l~~-~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~ 196 (266)
T 4g1u_C 118 DRQALQQVMAQTDCLA-LAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQ 196 (266)
T ss_dssp HHHHHHHHHHHTTCST-TTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChh-HhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHc
Confidence 4567889999999975 468999999999999 22233444443 2
Q ss_pred CCCeEEEEecCHHHHhccCCcEEEEeCCeeEEEcCChhHH
Q psy208 159 WPTTLLVVSHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAF 198 (443)
Q Consensus 159 ~~~tviiVSHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y 198 (443)
.+.|||+||||.+++..+||+|++|++|++. +.|..++.
T Consensus 197 ~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~-~~g~~~~~ 235 (266)
T 4g1u_C 197 EPLAVCCVLHDLNLAALYADRIMLLAQGKLV-ACGTPEEV 235 (266)
T ss_dssp SSEEEEEECSCHHHHHHHCSEEEEEETTEEE-EEECHHHH
T ss_pred CCCEEEEEEcCHHHHHHhCCEEEEEECCEEE-EEcCHHHH
Confidence 3459999999999999999999999999997 45776554
No 141
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.27 E-value=1.2e-11 Score=114.32 Aligned_cols=109 Identities=17% Similarity=0.091 Sum_probs=68.6
Q ss_pred ceeeeeeE-EEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCceEEEEeccCcccccccchhHHHHHHHhCCC
Q psy208 291 PILTNVCL-GATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEAAFPG 369 (443)
Q Consensus 291 ~il~~vsl-~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ig~~~Q~~~~~l~~~~~~~~~~~~~~~~ 369 (443)
+.|+.+.. .|.+|++++|+||||||||||++.|++ +..+ .+.|+..+. .+.. ...
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~---~~~~--------~v~~i~~~~--~~~~-~~~---------- 62 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL---LSGK--------KVAYVDTEG--GFSP-ERL---------- 62 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH---HHCS--------EEEEEESSC--CCCH-HHH----------
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH---HcCC--------cEEEEECCC--CCCH-HHH----------
Confidence 45566554 689999999999999999999999999 2222 234454332 1111 111
Q ss_pred CCHHHHHHHHhcCCCChhh--hhccCCCCCHHH--HHHHHHHHHhccC-CCeEEEeCCCCCCCHH
Q psy208 370 KPQEEYRRQLGGFGVSGDL--ALQFVGSLSGGQ--KSRVAFARMCMAA-PNFLVLDEPTNHLDIE 429 (443)
Q Consensus 370 ~~~~~~~~~L~~~gl~~~~--~~~~~~~LSgGe--kqRl~lA~al~~~-p~lLiLDEPTn~LD~~ 429 (443)
...+..+++..+. .+..+..+|+++ ++++..+++++.+ |+++|+||||+.+|..
T Consensus 63 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~ 121 (220)
T 2cvh_A 63 ------VQMAETRGLNPEEALSRFILFTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAE 121 (220)
T ss_dssp ------HHHHHTTTCCHHHHHHHEEEECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGG
T ss_pred ------HHHHHhcCCChHHHhhcEEEEecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhc
Confidence 1112222221110 011334566664 5678888889876 9999999999999974
No 142
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.26 E-value=3.1e-14 Score=143.65 Aligned_cols=139 Identities=11% Similarity=0.093 Sum_probs=81.0
Q ss_pred eeeeeeEEEeC--CCEEEEECCCCCcHHHHHHHHHcCCCCCC----ceEEEcCceEEEEeccCcccccccchhHHHHHHH
Q psy208 292 ILTNVCLGATL--ESRICIVGDNGAGKTTLLKIIMGIISPTA----GTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEA 365 (443)
Q Consensus 292 il~~vsl~i~~--Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~----G~i~~~~~~~ig~~~Q~~~~~l~~~~~~~~~~~~ 365 (443)
+...|+++|.+ |++++|+||||||||||+++|+|+++|++ |++.+.... ..... .+... .. ..+..
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~-----~~~~~-~~~~~-~~-~~I~~ 228 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKL-----GGDEQ-AMQYS-DY-PQMAL 228 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSS-----SSCTT-SSCTT-TH-HHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhc-----CCCcc-cCChh-HH-HHHHH
Confidence 45679999999 99999999999999999999999999998 766442100 00000 00000 00 11110
Q ss_pred hCCCCCHHHHHHHHhcCCC-ChhhhhccCCCCCHHHHHHHHHHHHhc-cCCCeEEEeC---CC------CCCCHHHHHHH
Q psy208 366 AFPGKPQEEYRRQLGGFGV-SGDLALQFVGSLSGGQKSRVAFARMCM-AAPNFLVLDE---PT------NHLDIETIEAL 434 (443)
Q Consensus 366 ~~~~~~~~~~~~~L~~~gl-~~~~~~~~~~~LSgGekqRl~lA~al~-~~p~lLiLDE---PT------n~LD~~s~~~l 434 (443)
.... ...........+-+ ..+..+..+..+|+|++++..+++++. .+|+++|||| |+ .++|...+..+
T Consensus 229 ~~q~-~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l 307 (365)
T 1lw7_A 229 GHQR-YIDYAVRHSHKIAFIDTDFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQF 307 (365)
T ss_dssp HHHH-HHHHHHHHCSSEEEESSCHHHHHHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHH
T ss_pred HHHH-HHHHHHhccCCEEEEeCCchHHHHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHH
Confidence 0000 00000011111111 112223344567778788888888774 6999999999 65 58999999999
Q ss_pred HHHHc
Q psy208 435 GKAIN 439 (443)
Q Consensus 435 ~~~L~ 439 (443)
.++|.
T Consensus 308 ~~~l~ 312 (365)
T 1lw7_A 308 QQLLK 312 (365)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88884
No 143
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.24 E-value=3.9e-11 Score=115.95 Aligned_cols=82 Identities=22% Similarity=0.342 Sum_probs=67.1
Q ss_pred HHHHHHHHHhCCCChhhhhccCC-CCChHHHH--------------------------HHHHHHHHHhhhC---CCeEEE
Q psy208 116 PARASVILAGLGFTPEMQKRATK-HFSGGWRK--------------------------MAIIWLENYLQNW---PTTLLV 165 (443)
Q Consensus 116 ~~rv~~~L~~lgl~~~~~~~~~~-~LSGGqr~--------------------------~~i~wL~~~L~~~---~~tvii 165 (443)
..++.++|+.+|+.....++++. +||||||| .+..++.+.|+++ +.|||+
T Consensus 140 ~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tvii 219 (267)
T 2zu0_C 140 QDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFII 219 (267)
T ss_dssp HHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEE
T ss_pred HHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEE
Confidence 35788899999997444678887 59999999 6777888888654 579999
Q ss_pred EecCHHHHhcc-CCcEEEEeCCeeEEEcCChhHH
Q psy208 166 VSHDRHFLDSV-PTDIFHLHSQRIDTYRGNYEAF 198 (443)
Q Consensus 166 VSHDr~fLd~v-~~~i~~l~~g~i~~~~G~y~~y 198 (443)
||||.+++..+ ||+|+.|++|++. +.|+.+..
T Consensus 220 vtHd~~~~~~~~~d~v~~l~~G~i~-~~g~~~~~ 252 (267)
T 2zu0_C 220 VTHYQRILDYIKPDYVHVLYQGRIV-KSGDFTLV 252 (267)
T ss_dssp ECSSGGGGGTSCCSEEEEEETTEEE-EEECTTHH
T ss_pred EeeCHHHHHhhcCCEEEEEECCEEE-EEcCHHHH
Confidence 99999999886 9999999999996 45766543
No 144
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.22 E-value=8.2e-11 Score=112.51 Aligned_cols=81 Identities=17% Similarity=0.174 Sum_probs=65.9
Q ss_pred HHHHHHHHHhCCCChhhhhccCCCCChHHHH---------------------------------HHHHHHHHHhhh---C
Q psy208 116 PARASVILAGLGFTPEMQKRATKHFSGGWRK---------------------------------MAIIWLENYLQN---W 159 (443)
Q Consensus 116 ~~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~---------------------------------~~i~wL~~~L~~---~ 159 (443)
+.++.+++..+|+.+ ..++++.+||||||| .+..++.+.|++ .
T Consensus 104 ~~~~~~~l~~~~l~~-~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~ 182 (249)
T 2qi9_C 104 TELLNDVAGALALDD-KLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQ 182 (249)
T ss_dssp HHHHHHHHHHTTCGG-GTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCChh-HhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhC
Confidence 457888999999975 468999999999999 455566666643 3
Q ss_pred CCeEEEEecCHHHHhccCCcEEEEeCCeeEEEcCChhHH
Q psy208 160 PTTLLVVSHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAF 198 (443)
Q Consensus 160 ~~tviiVSHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y 198 (443)
+.|||+||||.+++..+||+|+.|++|++. +.|+.++.
T Consensus 183 g~tviivtHd~~~~~~~~d~v~~l~~G~i~-~~g~~~~~ 220 (249)
T 2qi9_C 183 GLAIVMSSHDLNHTLRHAHRAWLLKGGKML-ASGRREEV 220 (249)
T ss_dssp TCEEEEECSCHHHHHHHCSEEEEEETTEEE-EEEEHHHH
T ss_pred CCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EeCCHHHH
Confidence 679999999999999999999999999986 45776554
No 145
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.22 E-value=9.5e-11 Score=113.46 Aligned_cols=78 Identities=17% Similarity=0.298 Sum_probs=60.7
Q ss_pred HHHHHHhC--CCChhhhhccCCCCChHHHH--------------------------HHHHHHHHHhhhC----CCeEEEE
Q psy208 119 ASVILAGL--GFTPEMQKRATKHFSGGWRK--------------------------MAIIWLENYLQNW----PTTLLVV 166 (443)
Q Consensus 119 v~~~L~~l--gl~~~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L~~~----~~tviiV 166 (443)
+..++..+ |+.. ..++++.+||||||| .+...+.+.|+++ +.|||+|
T Consensus 135 ~~~~l~~l~~gl~~-~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviiv 213 (271)
T 2ixe_A 135 AHDFISGFPQGYDT-EVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLI 213 (271)
T ss_dssp CHHHHHHSTTGGGS-BCCGGGTTSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEE
T ss_pred HHHHHHhhhcchhh-hhcCCcCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEE
Confidence 45566666 6653 357889999999999 5666777777543 5799999
Q ss_pred ecCHHHHhccCCcEEEEeCCeeEEEcCChhHHH
Q psy208 167 SHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAFD 199 (443)
Q Consensus 167 SHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y~ 199 (443)
|||.+++.. ||+|+.|++|++. ..|+.++..
T Consensus 214 tHd~~~~~~-~d~v~~l~~G~i~-~~g~~~~l~ 244 (271)
T 2ixe_A 214 TQQLSLAER-AHHILFLKEGSVC-EQGTHLQLM 244 (271)
T ss_dssp CSCHHHHTT-CSEEEEEETTEEE-EEECHHHHH
T ss_pred eCCHHHHHh-CCEEEEEECCEEE-EECCHHHHH
Confidence 999999875 9999999999986 457766553
No 146
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.22 E-value=2.3e-11 Score=116.44 Aligned_cols=79 Identities=22% Similarity=0.280 Sum_probs=60.6
Q ss_pred HHHHHHHHhCCCChhhhhccCCC-CChHHHH--------------------------HHHHHHHHHhhh---CCCeEEEE
Q psy208 117 ARASVILAGLGFTPEMQKRATKH-FSGGWRK--------------------------MAIIWLENYLQN---WPTTLLVV 166 (443)
Q Consensus 117 ~rv~~~L~~lgl~~~~~~~~~~~-LSGGqr~--------------------------~~i~wL~~~L~~---~~~tviiV 166 (443)
.++.++|..+|++....++++.+ ||||||| .+...+.+.|++ .+.|||+|
T Consensus 120 ~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~v 199 (250)
T 2d2e_A 120 TKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVI 199 (250)
T ss_dssp HHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEE
T ss_pred HHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 46888899999964456899999 9999999 566666666644 36799999
Q ss_pred ecCHHHHhcc-CCcEEEEeCCeeEEEcCChh
Q psy208 167 SHDRHFLDSV-PTDIFHLHSQRIDTYRGNYE 196 (443)
Q Consensus 167 SHDr~fLd~v-~~~i~~l~~g~i~~~~G~y~ 196 (443)
|||.+++..+ ||+|+.|++|++. +.|+.+
T Consensus 200 tHd~~~~~~~~~d~v~~l~~G~i~-~~g~~~ 229 (250)
T 2d2e_A 200 THYQRILNYIQPDKVHVMMDGRVV-ATGGPE 229 (250)
T ss_dssp CSSSGGGGTSCCSEEEEEETTEEE-EEESHH
T ss_pred ecCHHHHHHhcCCEEEEEECCEEE-EEeCHH
Confidence 9999999998 5999999999996 457655
No 147
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.21 E-value=1e-11 Score=138.05 Aligned_cols=68 Identities=28% Similarity=0.266 Sum_probs=60.8
Q ss_pred HHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCC--eEEEeCCCCCCCHHHHHHHHHHHcccc
Q psy208 375 YRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPN--FLVLDEPTNHLDIETIEALGKAINKYT 442 (443)
Q Consensus 375 ~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~--lLiLDEPTn~LD~~s~~~l~~~L~~~~ 442 (443)
....|..+|+.....++++.+|||||+|||+||++|+.+|+ +|||||||+|||+...+.|.+.|+++.
T Consensus 444 ~~~~L~~vgL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~ 513 (916)
T 3pih_A 444 RLEFLVDVGLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLR 513 (916)
T ss_dssp HHHHHHTTTCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTT
T ss_pred HHHHHHHcCCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHH
Confidence 44678889987555789999999999999999999999887 999999999999999999999998764
No 148
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.21 E-value=6.6e-14 Score=126.57 Aligned_cols=119 Identities=19% Similarity=0.224 Sum_probs=72.8
Q ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCC---CceEEEcCce---------------EEE----EeccCcccccccchhHHH
Q psy208 304 SRICIVGDNGAGKTTLLKIIMGIISPT---AGTRTVHRNL---------------KFG----YFSQHHVDQLDMNLRCVQ 361 (443)
Q Consensus 304 e~i~iiG~NGsGKSTLlk~l~G~~~p~---~G~i~~~~~~---------------~ig----~~~Q~~~~~l~~~~~~~~ 361 (443)
++++|+|+||||||||+++|+|+++|+ .|.|.+++.. .+| +++|++...+. .
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~i~-~----- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAFIR-R----- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEEEE-E-----
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEEEe-c-----
Confidence 579999999999999999999999998 8988764311 133 55554321110 0
Q ss_pred HHHHhCCCCCHH--HHHHHHhc-C-CCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeE-------EEeCCC---CCCC
Q psy208 362 LLEAAFPGKPQE--EYRRQLGG-F-GVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFL-------VLDEPT---NHLD 427 (443)
Q Consensus 362 ~~~~~~~~~~~~--~~~~~L~~-~-gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lL-------iLDEPT---n~LD 427 (443)
...+. .+.+++.. + |+.. .-...|||||+||++|||+++.+|++. +=|.|. -.+|
T Consensus 77 -------~~~~~~a~l~~~i~~~l~g~dt----~i~EglSgGq~qri~lARall~~p~i~~~~~~a~~~~~~~~~~~~f~ 145 (171)
T 2f1r_A 77 -------VSEEEGNDLDWIYERYLSDYDL----VITEGFSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDERVDGHKWFR 145 (171)
T ss_dssp -------CCHHHHTCHHHHHHHHTTTCSE----EEEESCGGGCCCEEEECSSGGGGGGGCSSCEEEEECSSCCSSSCEEC
T ss_pred -------CChhhhhCHHHHHHhhCCCCCE----EEECCcCCCCCcEEEEEecccCCCccCccceEEEEecCCcccCcccC
Confidence 00011 23334443 3 3321 112249999999999999999998773 235553 2344
Q ss_pred HHHHHHHHHHHc
Q psy208 428 IETIEALGKAIN 439 (443)
Q Consensus 428 ~~s~~~l~~~L~ 439 (443)
....+.+.+.|.
T Consensus 146 ~~~~~~~a~~i~ 157 (171)
T 2f1r_A 146 RDEVERIAEFIL 157 (171)
T ss_dssp TTCHHHHHHHHH
T ss_pred cccHHHHHHHHH
Confidence 555566666653
No 149
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.20 E-value=1.3e-11 Score=111.75 Aligned_cols=52 Identities=25% Similarity=0.421 Sum_probs=47.1
Q ss_pred hccCCCCCHHHHHHHHHHHHhc----cCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 390 LQFVGSLSGGQKSRVAFARMCM----AAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 390 ~~~~~~LSgGekqRl~lA~al~----~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
.+++..||||||||++||++++ .+|+++||||||++||+.++..+.+.|.++
T Consensus 59 ~~~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~ 114 (173)
T 3kta_B 59 VKRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKES 114 (173)
T ss_dssp CCCGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHH
T ss_pred ccccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHh
Confidence 4667899999999999999997 457999999999999999999999998765
No 150
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.19 E-value=1.1e-12 Score=134.30 Aligned_cols=131 Identities=18% Similarity=0.143 Sum_probs=77.1
Q ss_pred eeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCceEEEEeccCcccccccchh--HHHHHHHhCCCC
Q psy208 293 LTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLR--CVQLLEAAFPGK 370 (443)
Q Consensus 293 l~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ig~~~Q~~~~~l~~~~~--~~~~~~~~~~~~ 370 (443)
-++++|+++.|++++|+|+|||||||||++|+|..+...+.-.......+|++.++....+....+ ..+. .......
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~-a~~~~~L 225 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEG-ASEGKGL 225 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCC-GGGSCCS
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCcceEEEEeccccccc-hhhhhhh
Confidence 478999999999999999999999999999999842111100000112234443321000000000 0000 0000001
Q ss_pred CHHHH------HHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCCHHHHH
Q psy208 371 PQEEY------RRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIE 432 (443)
Q Consensus 371 ~~~~~------~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD~~s~~ 432 (443)
..... ..++..+++. +.++.+||+|+++++.+|++|+..|.+|+| |.+|+...+
T Consensus 226 ~~~fl~~~era~~lL~vvDls----~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~~~ 285 (416)
T 1udx_A 226 GLEFLRHIARTRVLLYVLDAA----DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLEEE 285 (416)
T ss_dssp CHHHHHHHTSSSEEEEEEETT----SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCHH
T ss_pred hHHHHHHHHHHHhhhEEeCCc----cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhhHH
Confidence 11111 1122233332 456778999999999999999999999999 999987653
No 151
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.18 E-value=1e-12 Score=128.57 Aligned_cols=121 Identities=15% Similarity=0.096 Sum_probs=77.4
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCceEEEEeccCcccccccchhHHHHHHHh-----------CCC
Q psy208 301 TLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEAA-----------FPG 369 (443)
Q Consensus 301 ~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ig~~~Q~~~~~l~~~~~~~~~~~~~-----------~~~ 369 (443)
.++.+++|+|++|||||||.++|.+++.+. |. ....+.+++|+.. .+ ..+...++... .+.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~-g~----~~~~~~iv~~D~f-~~--~~~~~~~l~~~~~~~~l~~~~g~p~ 100 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEK-YG----GEKSIGYASIDDF-YL--THEDQLKLNEQFKNNKLLQGRGLPG 100 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHH-HG----GGSCEEEEEGGGG-BC--CHHHHHHHHHHTTTCGGGSSSCSTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhc-CC----CCceEEEeccccc-cC--ChHHHHHHhccccccchhhhccCcc
Confidence 356789999999999999999999998763 20 0112344478753 22 23334443221 122
Q ss_pred -CCHHHHHHHHhcCCCCh-------hhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCCHH
Q psy208 370 -KPQEEYRRQLGGFGVSG-------DLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIE 429 (443)
Q Consensus 370 -~~~~~~~~~L~~~gl~~-------~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD~~ 429 (443)
.....+.+.+..+.-.. -....+...+||||+||+.+|++...+|+|||+||||+++|+.
T Consensus 101 a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~~~~IlIlEG~~~~ld~~ 168 (290)
T 1odf_A 101 THDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKLPVDIFILEGWFLGFNPI 168 (290)
T ss_dssp SBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEESSCSEEEEEESSTTCCCC
T ss_pred hhHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEcCCCEEEEeCccccCCcc
Confidence 23345556666553220 1122345789999999999873333399999999999999985
No 152
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.16 E-value=2.1e-10 Score=108.80 Aligned_cols=137 Identities=18% Similarity=0.188 Sum_probs=86.5
Q ss_pred HHHHHHHccccccCCCCCcceEEecCCceEEEEecccCCCCchHHHHHHhccHHHHHHHHHHHHHHHHHhCCCCChhhHH
Q psy208 19 EFYCKALTLHLHLEGGMVSGQLRIPSHISVLHVEQEVVGDDTPAIDSVLECDTKRQNLLNREKTITQAINNGTADANMST 98 (443)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~G~i~~~~~~~i~~l~Q~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ 98 (443)
++|++.+.|.+.|+ +|+|.+.+ +++|++|++.....|+.+.+.-... ...+
T Consensus 45 STLl~~l~Gl~~p~----~G~I~~~g--~i~~v~Q~~~~~~~tv~enl~~~~~--------------------~~~~--- 95 (237)
T 2cbz_A 45 SSLLSALLAEMDKV----EGHVAIKG--SVAYVPQQAWIQNDSLRENILFGCQ--------------------LEEP--- 95 (237)
T ss_dssp HHHHHHHTTCSEEE----EEEEEECS--CEEEECSSCCCCSEEHHHHHHTTSC--------------------CCTT---
T ss_pred HHHHHHHhcCCCCC----CceEEECC--EEEEEcCCCcCCCcCHHHHhhCccc--------------------cCHH---
Confidence 45666666666655 49999876 6999999976555566655532110 0000
Q ss_pred HHHHHHHHHhhcccCCHHHHHHHHHHhCCCCh----hhhhccCCCCChHHHH--------------------------HH
Q psy208 99 ELTQVFAELEAIEADKAPARASVILAGLGFTP----EMQKRATKHFSGGWRK--------------------------MA 148 (443)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~rv~~~L~~lgl~~----~~~~~~~~~LSGGqr~--------------------------~~ 148 (443)
...++.+ +..++..+++.+ ...++++.+||||||| .+
T Consensus 96 ~~~~~~~-------------~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~ 162 (237)
T 2cbz_A 96 YYRSVIQ-------------ACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHV 162 (237)
T ss_dssp HHHHHHH-------------HTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHH
T ss_pred HHHHHHH-------------HHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHH
Confidence 0000100 000111222211 1246789999999999 56
Q ss_pred HHHHHHHhh---h--CCCeEEEEecCHHHHhccCCcEEEEeCCeeEEEcCChhHHH
Q psy208 149 IIWLENYLQ---N--WPTTLLVVSHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAFD 199 (443)
Q Consensus 149 i~wL~~~L~---~--~~~tviiVSHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y~ 199 (443)
...+.+.|. . .+.|||+||||.+++. .||+|+.|++|++. ..|+++...
T Consensus 163 ~~~i~~~l~~~~~~~~~~tviivtH~~~~~~-~~d~v~~l~~G~i~-~~g~~~~~~ 216 (237)
T 2cbz_A 163 GKHIFENVIGPKGMLKNKTRILVTHSMSYLP-QVDVIIVMSGGKIS-EMGSYQELL 216 (237)
T ss_dssp HHHHHHHTTSTTSTTTTSEEEEECSCSTTGG-GSSEEEEEETTEEE-EEECHHHHH
T ss_pred HHHHHHHHHHHHhhcCCCEEEEEecChHHHH-hCCEEEEEeCCEEE-EeCCHHHHh
Confidence 677777773 2 3679999999999986 69999999999996 457776653
No 153
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.15 E-value=2.5e-10 Score=108.98 Aligned_cols=64 Identities=14% Similarity=0.217 Sum_probs=50.9
Q ss_pred hhccCCCCChHHHH--------------------------HHHHHHHHHhhh--CCCeEEEEecCHHHHhccCCcEEEEe
Q psy208 133 QKRATKHFSGGWRK--------------------------MAIIWLENYLQN--WPTTLLVVSHDRHFLDSVPTDIFHLH 184 (443)
Q Consensus 133 ~~~~~~~LSGGqr~--------------------------~~i~wL~~~L~~--~~~tviiVSHDr~fLd~v~~~i~~l~ 184 (443)
.++++.+||||||| .+...+.+.|++ .+.|||+||||.+++.. ||+|+.|+
T Consensus 139 ~~~~~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~~~~~~~-~d~v~~l~ 217 (247)
T 2ff7_A 139 VGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKN-ADRIIVME 217 (247)
T ss_dssp CSTTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTT-SSEEEEEE
T ss_pred hhCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHh-CCEEEEEE
Confidence 45678999999999 455566666643 37899999999999865 99999999
Q ss_pred CCeeEEEcCChhHH
Q psy208 185 SQRIDTYRGNYEAF 198 (443)
Q Consensus 185 ~g~i~~~~G~y~~y 198 (443)
+|++. +.|+.++.
T Consensus 218 ~G~i~-~~g~~~~l 230 (247)
T 2ff7_A 218 KGKIV-EQGKHKEL 230 (247)
T ss_dssp TTEEE-EEECHHHH
T ss_pred CCEEE-EECCHHHH
Confidence 99996 45776654
No 154
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.15 E-value=5.6e-10 Score=105.32 Aligned_cols=139 Identities=12% Similarity=0.073 Sum_probs=86.7
Q ss_pred HHHHHHHccccccCCCCCcceEEecCCceEEEEecccCCCCchHHHHHHhccHHHHHHHHHHHHHHHHHhCCCCChhhHH
Q psy208 19 EFYCKALTLHLHLEGGMVSGQLRIPSHISVLHVEQEVVGDDTPAIDSVLECDTKRQNLLNREKTITQAINNGTADANMST 98 (443)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~G~i~~~~~~~i~~l~Q~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ 98 (443)
++|++.+.|.+.|+. |+|.+.+ +|+|++|++.....|+.+.+.-+... .. .
T Consensus 48 STLl~~l~Gl~~p~~----G~i~~~g--~i~~v~q~~~~~~~tv~enl~~~~~~--------------------~~---~ 98 (229)
T 2pze_A 48 TSLLMMIMGELEPSE----GKIKHSG--RISFCSQFSWIMPGTIKENIIFGVSY--------------------DE---Y 98 (229)
T ss_dssp HHHHHHHTTSSCCSE----EEEEECS--CEEEECSSCCCCSBCHHHHHHTTSCC--------------------CH---H
T ss_pred HHHHHHHhCCCcCCc----cEEEECC--EEEEEecCCcccCCCHHHHhhccCCc--------------------Ch---H
Confidence 467777777766654 9999876 69999999865445666555432100 00 0
Q ss_pred HHHHHHHHHhhcccCCHHHHHHHHHHhCCCCh-hhhhccCCCCChHHHH--------------------------HHHHH
Q psy208 99 ELTQVFAELEAIEADKAPARASVILAGLGFTP-EMQKRATKHFSGGWRK--------------------------MAIIW 151 (443)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~rv~~~L~~lgl~~-~~~~~~~~~LSGGqr~--------------------------~~i~w 151 (443)
++.+..+. . .+...+..+.... ...++++.+||||||| .+...
T Consensus 99 ~~~~~~~~---~-------~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~ 168 (229)
T 2pze_A 99 RYRSVIKA---C-------QLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKE 168 (229)
T ss_dssp HHHHHHHH---T-------TCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHH
T ss_pred HHHHHHHH---h-------CcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHH
Confidence 00000000 0 1112233332211 1234567999999999 56777
Q ss_pred HHHHh-hhC--CCeEEEEecCHHHHhccCCcEEEEeCCeeEEEcCChhHH
Q psy208 152 LENYL-QNW--PTTLLVVSHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAF 198 (443)
Q Consensus 152 L~~~L-~~~--~~tviiVSHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y 198 (443)
+.+.+ +.. +.|||+||||.+++. .||+|+.|++|++. +.|++++.
T Consensus 169 i~~~l~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~G~i~-~~g~~~~~ 216 (229)
T 2pze_A 169 IFESCVCKLMANKTRILVTSKMEHLK-KADKILILHEGSSY-FYGTFSEL 216 (229)
T ss_dssp HHHHCCCCCTTTSEEEEECCCHHHHH-HCSEEEEEETTEEE-EEECHHHH
T ss_pred HHHHHHHHhhCCCEEEEEcCChHHHH-hCCEEEEEECCEEE-EECCHHHH
Confidence 77763 332 679999999999986 49999999999996 45777654
No 155
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=99.14 E-value=2.5e-13 Score=133.90 Aligned_cols=59 Identities=24% Similarity=0.340 Sum_probs=54.3
Q ss_pred CeEEEeeeEEEeCCCCceeeeeeEEE-------------------eCCCEEEEECCCCCcHHHHHHHHHcCCC--CCCce
Q psy208 275 PILQLSEVNFEYVPGKPILTNVCLGA-------------------TLESRICIVGDNGAGKTTLLKIIMGIIS--PTAGT 333 (443)
Q Consensus 275 ~~l~~~~l~~~y~~~~~il~~vsl~i-------------------~~Ge~i~iiG~NGsGKSTLlk~l~G~~~--p~~G~ 333 (443)
.+|+++||++.|. +++++++|.+ .+|+++||+|+||||||||+++|+|++. |++|+
T Consensus 36 ~~i~~~~v~~~y~---~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~ 112 (308)
T 1sq5_A 36 EDLSLEEVAEIYL---PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRR 112 (308)
T ss_dssp TTCCHHHHHHTHH---HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCC
T ss_pred cccchHhHHHHHH---HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCe
Confidence 3589999999993 6999999988 8999999999999999999999999988 99999
Q ss_pred EEE
Q psy208 334 RTV 336 (443)
Q Consensus 334 i~~ 336 (443)
|.+
T Consensus 113 i~v 115 (308)
T 1sq5_A 113 VEL 115 (308)
T ss_dssp EEE
T ss_pred EEE
Confidence 876
No 156
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.14 E-value=1.3e-13 Score=127.89 Aligned_cols=112 Identities=21% Similarity=0.269 Sum_probs=67.5
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCceEEEEeccCcccccccchhHHHHHH---H-hCC-CCCHHH
Q psy208 300 ATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLE---A-AFP-GKPQEE 374 (443)
Q Consensus 300 i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ig~~~Q~~~~~l~~~~~~~~~~~---~-~~~-~~~~~~ 374 (443)
..+|++++|+||||||||||+++|+|+++|+ | ..+|+++++.. .+. .+....+. . ..+ ......
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~-g-------~~~g~v~~d~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~ 87 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ-G-------LPAEVVPMDGF-HLD--NRLLEPRGLLPRKGAPETFDFEG 87 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT-T-------CCEEEEESGGG-BCC--HHHHGGGTCGGGTTSGGGBCHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc-C-------CceEEEecCCC-cCC--HHHHHHhcccccCCCCchhhHHH
Confidence 4689999999999999999999999999875 4 13555665432 111 11111100 0 000 011222
Q ss_pred HHHHHhcCC----CChhhhhccCCCCCHHHHHHHHHH-HHhccCCCeEEEeCCC
Q psy208 375 YRRQLGGFG----VSGDLALQFVGSLSGGQKSRVAFA-RMCMAAPNFLVLDEPT 423 (443)
Q Consensus 375 ~~~~L~~~g----l~~~~~~~~~~~LSgGekqRl~lA-~al~~~p~lLiLDEPT 423 (443)
+...+..+. +.... ......+|+||+||++++ ++++.++.++++|||.
T Consensus 88 ~~~~l~~l~~~~~i~~p~-~d~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~ 140 (208)
T 3c8u_A 88 FQRLCHALKHQERVIYPL-FDRARDIAIAGAAEVGPECRVAIIEGNYLLFDAPG 140 (208)
T ss_dssp HHHHHHHHHHCSCEEEEE-EETTTTEEEEEEEEECTTCCEEEEEESSTTBCSTT
T ss_pred HHHHHHHHhcCCceeccc-CCccccCCCCCceEEcCCCcEEEECCceeccCCch
Confidence 223332211 10001 112335799999999998 8899999999999985
No 157
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.14 E-value=2.2e-12 Score=121.16 Aligned_cols=110 Identities=15% Similarity=0.184 Sum_probs=63.6
Q ss_pred eEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCC--CCceEEEcCc-------eEEEEeccCcccccccchhHHHHHHHhC
Q psy208 297 CLGATLESRICIVGDNGAGKTTLLKIIMGIISP--TAGTRTVHRN-------LKFGYFSQHHVDQLDMNLRCVQLLEAAF 367 (443)
Q Consensus 297 sl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p--~~G~i~~~~~-------~~ig~~~Q~~~~~l~~~~~~~~~~~~~~ 367 (443)
.-..++|++++|+||||||||||+++|+|+++| ..|.|.+... ..++|++|++.. +..+...
T Consensus 10 ~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~--------f~~~~~~- 80 (219)
T 1s96_A 10 HHHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDE--------FKEMISR- 80 (219)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHHH--------HHHHHHT-
T ss_pred cccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcccccCceEEECCHHH--------HHHHHhc-
Confidence 456789999999999999999999999999986 5777655321 125566654310 1111000
Q ss_pred CCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHc
Q psy208 368 PGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAIN 439 (443)
Q Consensus 368 ~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~ 439 (443)
.. +++...+ .+.+.|-.+++ +..++..++++||| ||+.+...+.+.+.
T Consensus 81 ~~--------f~E~~~~--------~~~~yg~~~~~---v~~~l~~G~illLD-----LD~~~~~~i~~~l~ 128 (219)
T 1s96_A 81 DA--------FLEHAEV--------FGNYYGTSREA---IEQVLATGVDVFLD-----IDWQGAQQIRQKMP 128 (219)
T ss_dssp TC--------EEEEEEE--------TTEEEEEEHHH---HHHHHTTTCEEEEE-----CCHHHHHHHHHHCT
T ss_pred CH--------HHHHHHH--------HhccCCCCHHH---HHHHHhcCCeEEEE-----ECHHHHHHHHHHcc
Confidence 00 0000000 01111111222 34455668999999 99999999998764
No 158
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.12 E-value=4.2e-12 Score=124.86 Aligned_cols=107 Identities=10% Similarity=0.102 Sum_probs=74.5
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEE---cCc----------e-EEEEeccCcccc-cc--cchhHHHH
Q psy208 300 ATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTV---HRN----------L-KFGYFSQHHVDQ-LD--MNLRCVQL 362 (443)
Q Consensus 300 i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~---~~~----------~-~ig~~~Q~~~~~-l~--~~~~~~~~ 362 (443)
+..|++++|+||||||||||+|+|+ +++|++|+|.. .+. . .+||++|.|... +. ...++ +.
T Consensus 162 ~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~-e~ 239 (302)
T 2yv5_A 162 YLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP-RE 239 (302)
T ss_dssp HTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG-GG
T ss_pred hccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH-HH
Confidence 3468999999999999999999999 99999999886 221 1 368999986321 11 12222 21
Q ss_pred HH----------HhCC-----CCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHH
Q psy208 363 LE----------AAFP-----GKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFAR 408 (443)
Q Consensus 363 ~~----------~~~~-----~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~ 408 (443)
+. ..+. ......+.++++.+++.....++++..|||.+++++.|||
T Consensus 240 l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 240 VRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYLKIIKVYLEEIKELCR 300 (302)
T ss_dssp GGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHHHHTTCCCTTHHHHSS
T ss_pred HHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 10 1121 1223468899999999865778899999998888898886
No 159
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.11 E-value=1.3e-11 Score=111.24 Aligned_cols=96 Identities=20% Similarity=0.162 Sum_probs=62.1
Q ss_pred eEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCceEEEEeccCcccccccchhHHHHHHHhCCCCCHHHHH
Q psy208 297 CLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYR 376 (443)
Q Consensus 297 sl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ig~~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 376 (443)
+|.+.+|+.++|+||||+|||||+++|++.+.|..|.. +.|+.-. .....+ .
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~-------~~~~~~~---------~~~~~~------------~ 83 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIR-------GYFFDTK---------DLIFRL------------K 83 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCC-------CCEEEHH---------HHHHHH------------H
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCe-------EEEEEHH---------HHHHHH------------H
Confidence 46677899999999999999999999999987777631 1111100 001111 1
Q ss_pred HHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCC-CCCHHHHHHHHHHHcc
Q psy208 377 RQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTN-HLDIETIEALGKAINK 440 (443)
Q Consensus 377 ~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn-~LD~~s~~~l~~~L~~ 440 (443)
....... .. -+...+.+|++||||||++ ++|+..++.+.+.|..
T Consensus 84 ~~~~~~~------------~~--------~~~~~~~~~~llilDE~~~~~~~~~~~~~l~~ll~~ 128 (180)
T 3ec2_A 84 HLMDEGK------------DT--------KFLKTVLNSPVLVLDDLGSERLSDWQRELISYIITY 128 (180)
T ss_dssp HHHHHTC------------CS--------HHHHHHHTCSEEEEETCSSSCCCHHHHHHHHHHHHH
T ss_pred HHhcCch------------HH--------HHHHHhcCCCEEEEeCCCCCcCCHHHHHHHHHHHHH
Confidence 1111000 00 0112234899999999985 9999999998887754
No 160
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.11 E-value=3.6e-11 Score=133.27 Aligned_cols=65 Identities=25% Similarity=0.277 Sum_probs=58.1
Q ss_pred HHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCC--CeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 377 RQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAP--NFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 377 ~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p--~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
..|..+|+..-..++++.+|||||+|||+||++|..+| .+|||||||++||+...+.|.+.|+++
T Consensus 486 ~~L~~vGL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~L 552 (972)
T 2r6f_A 486 GFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSM 552 (972)
T ss_dssp HHHHHHTCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHH
T ss_pred HHhhhCCCCccccCCccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHH
Confidence 34788898644578999999999999999999999985 999999999999999999999998765
No 161
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.11 E-value=5.4e-11 Score=131.24 Aligned_cols=64 Identities=27% Similarity=0.211 Sum_probs=57.8
Q ss_pred HHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCC--CeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 378 QLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAP--NFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 378 ~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p--~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
.|..+|+..-..++++.+|||||+|||+||++|..+| .+|||||||+|||+..++.|.+.|+.+
T Consensus 362 ~L~~vGL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L 427 (842)
T 2vf7_A 362 VLLHLGLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENL 427 (842)
T ss_dssp HHHHTTCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHH
T ss_pred HHHhCCCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHH
Confidence 5778999644478999999999999999999999999 499999999999999999999988754
No 162
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.10 E-value=3.6e-12 Score=132.31 Aligned_cols=126 Identities=16% Similarity=0.099 Sum_probs=78.1
Q ss_pred eeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcC-----------------ceEEEEeccCccccccc
Q psy208 293 LTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR-----------------NLKFGYFSQHHVDQLDM 355 (443)
Q Consensus 293 l~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------------~~~ig~~~Q~~~~~l~~ 355 (443)
-+++||++.+|++++|+|+||||||||+++|+|+++|++|+|.+.. ...++|++|+.. ++.
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~--~~p 360 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTG--ADS 360 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTT--CCH
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccC--cCH
Confidence 4688999999999999999999999999999999999999998741 123788888642 344
Q ss_pred chhHHHHHHHhC-CCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhc-cCCC-eEEEeCCCCCCCHH
Q psy208 356 NLRCVQLLEAAF-PGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCM-AAPN-FLVLDEPTNHLDIE 429 (443)
Q Consensus 356 ~~~~~~~~~~~~-~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~-~~p~-lLiLDEPTn~LD~~ 429 (443)
..++.+++.... .+.+ .-++...|..... ...+..| ++++.+++++. ..|+ +||...||.+.|..
T Consensus 361 ~~tV~e~l~~a~~~~~D----vVLIDTaGrl~~~-~~lm~EL----~kiv~iar~l~~~~P~evLLvLDattGq~al 428 (503)
T 2yhs_A 361 ASVIFDAIQAAKARNID----VLIADTAGRLQNK-SHLMEEL----KKIVRVMKKLDVEAPHEVMLTIDASTGQNAV 428 (503)
T ss_dssp HHHHHHHHHHHHHTTCS----EEEECCCCSCCCH-HHHHHHH----HHHHHHHHTTCTTCSSEEEEEEEGGGTHHHH
T ss_pred HHHHHHHHHHHHhcCCC----EEEEeCCCccchh-hhHHHHH----HHHHHHHHHhccCCCCeeEEEecCcccHHHH
Confidence 445555443210 0000 0011222321110 1111223 46778888664 4463 55455588886654
No 163
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.10 E-value=4.6e-11 Score=132.78 Aligned_cols=64 Identities=23% Similarity=0.252 Sum_probs=57.1
Q ss_pred HHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccC--CCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 378 QLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAA--PNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 378 ~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~--p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
.|..+|+..-..++++.+|||||+|||+||++|..+ |.+|||||||+|||+...+.|.+.|+++
T Consensus 504 ~L~~vGL~~l~l~r~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~L 569 (993)
T 2ygr_A 504 FLLDVGLEYLSLSRAAATLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRL 569 (993)
T ss_dssp HHHHHTGGGSCTTCBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCHHHHHHHHHHHHHH
T ss_pred HHhhCCCCccccCCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEeCcccCCCHHHHHHHHHHHHHH
Confidence 477788864347899999999999999999999998 5899999999999999999999998764
No 164
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.09 E-value=1.6e-09 Score=106.49 Aligned_cols=66 Identities=21% Similarity=0.188 Sum_probs=51.1
Q ss_pred hhccCCCCChHHHH--------------------------HHHHHHHHHhhh--CCCeEEEEecCHHHHhccCCcEEEEe
Q psy208 133 QKRATKHFSGGWRK--------------------------MAIIWLENYLQN--WPTTLLVVSHDRHFLDSVPTDIFHLH 184 (443)
Q Consensus 133 ~~~~~~~LSGGqr~--------------------------~~i~wL~~~L~~--~~~tviiVSHDr~fLd~v~~~i~~l~ 184 (443)
.++...+||||||| .+...+.+.|++ .+.|+|+||||...+.. ||+|++|+
T Consensus 184 ~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~-aD~i~vl~ 262 (306)
T 3nh6_A 184 VGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVVN-ADQILVIK 262 (306)
T ss_dssp ESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHTTSEEEEECCSHHHHHT-CSEEEEEE
T ss_pred hcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEEcChHHHHc-CCEEEEEE
Confidence 45678899999999 333444444432 36899999999999987 99999999
Q ss_pred CCeeEEEcCChhHHHH
Q psy208 185 SQRIDTYRGNYEAFDK 200 (443)
Q Consensus 185 ~g~i~~~~G~y~~y~~ 200 (443)
+|++.. .|++++...
T Consensus 263 ~G~iv~-~G~~~el~~ 277 (306)
T 3nh6_A 263 DGCIVE-RGRHEALLS 277 (306)
T ss_dssp TTEEEE-EECHHHHHH
T ss_pred CCEEEE-ECCHHHHHh
Confidence 999974 588876643
No 165
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=99.09 E-value=3.8e-11 Score=118.25 Aligned_cols=98 Identities=16% Similarity=0.212 Sum_probs=71.1
Q ss_pred eeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCceEEEEeccCcccccccchhHHHHHHHhCCCCCHHHH
Q psy208 296 VCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEY 375 (443)
Q Consensus 296 vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ig~~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 375 (443)
+++...+|++++|+|+|||||||+++.|++.+.+..|+|.+ +..+.. . .... +++
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~l--------v~~D~~---r--~~a~------------eqL 151 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVL--------AAADTF---R--AAAI------------EQL 151 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEE--------EEECTT---C--HHHH------------HHH
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEE--------Eccccc---c--HHHH------------HHH
Confidence 45566789999999999999999999999999988777644 222221 0 0111 122
Q ss_pred HHHHhcCCCChhhhhccCCCCCHHHHHHH---HHHHHhccCCCeEEEeCCCC
Q psy208 376 RRQLGGFGVSGDLALQFVGSLSGGQKSRV---AFARMCMAAPNFLVLDEPTN 424 (443)
Q Consensus 376 ~~~L~~~gl~~~~~~~~~~~LSgGekqRl---~lA~al~~~p~lLiLDEPTn 424 (443)
..++..+++. .+..+|+|+.+++ +|++++..+|+++|+|+|..
T Consensus 152 ~~~~~~~gl~------~~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 152 KIWGERVGAT------VISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR 197 (306)
T ss_dssp HHHHHHHTCE------EECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC
T ss_pred HHHHHHcCCc------EEecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 3344444543 1346789999999 89999999999999999985
No 166
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=99.08 E-value=5.9e-11 Score=116.30 Aligned_cols=115 Identities=16% Similarity=0.089 Sum_probs=76.7
Q ss_pred eeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCceEEEEeccCcccccccchhHHHHHHHhCCCCCHH
Q psy208 294 TNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQE 373 (443)
Q Consensus 294 ~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ig~~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~ 373 (443)
++++|+ +|++++|+|+||+||||+++.|++.+.+..|+|.+ +..+... . .....+
T Consensus 91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l--------~~~d~~~----~-~~~~ql---------- 145 (295)
T 1ls1_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLL--------VAADTQR----P-AAREQL---------- 145 (295)
T ss_dssp CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEE--------EECCSSC----H-HHHHHH----------
T ss_pred ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEE--------ecCCccc----H-hHHHHH----------
Confidence 567777 89999999999999999999999999888887654 2222210 0 001111
Q ss_pred HHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCC-CCCCCHHHHHHHHHHH
Q psy208 374 EYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEP-TNHLDIETIEALGKAI 438 (443)
Q Consensus 374 ~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEP-Tn~LD~~s~~~l~~~L 438 (443)
..+....++.- ... ....+..+.+|.+|+.+...+++++|+||| +.++|......+..+.
T Consensus 146 --~~~~~~~~l~~--~~~-~~~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~~~~ 206 (295)
T 1ls1_A 146 --RLLGEKVGVPV--LEV-MDGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLK 206 (295)
T ss_dssp --HHHHHHHTCCE--EEC-CTTCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHH
T ss_pred --HHhcccCCeEE--EEc-CCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHHHHh
Confidence 11122233321 000 011234455788999888899999999999 9999998887776654
No 167
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.07 E-value=1e-09 Score=104.41 Aligned_cols=64 Identities=19% Similarity=0.221 Sum_probs=47.4
Q ss_pred hccCCCCChHHHH--------------------------HHHHHHHHHhhh--CCCeEEEEecCHHHHhccCCcEEEEeC
Q psy208 134 KRATKHFSGGWRK--------------------------MAIIWLENYLQN--WPTTLLVVSHDRHFLDSVPTDIFHLHS 185 (443)
Q Consensus 134 ~~~~~~LSGGqr~--------------------------~~i~wL~~~L~~--~~~tviiVSHDr~fLd~v~~~i~~l~~ 185 (443)
++++.+||||||| .+...+.+.|++ .+.|||+||||.+++. .||+|+.|++
T Consensus 134 ~~~~~~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~ 212 (243)
T 1mv5_A 134 GERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIV-DADKIYFIEK 212 (243)
T ss_dssp STTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHH-HCSEEEEEET
T ss_pred ccCcCcCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCChHHHH-hCCEEEEEEC
Confidence 4567899999999 122233333321 3789999999999986 5999999999
Q ss_pred CeeEEEcCChhHHH
Q psy208 186 QRIDTYRGNYEAFD 199 (443)
Q Consensus 186 g~i~~~~G~y~~y~ 199 (443)
|++. ..|+.++..
T Consensus 213 G~i~-~~g~~~~~~ 225 (243)
T 1mv5_A 213 GQIT-GSGKHNELV 225 (243)
T ss_dssp TEEC-CCSCHHHHH
T ss_pred CEEE-EeCCHHHHH
Confidence 9986 568876653
No 168
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.07 E-value=2e-10 Score=107.38 Aligned_cols=126 Identities=11% Similarity=0.077 Sum_probs=83.1
Q ss_pred HHHHHHHccccccCCCCCcceEEecCC------ceEEEEecccCC-CCchHHHHHHhccHHHHHHHHHHHHHHHHHhCCC
Q psy208 19 EFYCKALTLHLHLEGGMVSGQLRIPSH------ISVLHVEQEVVG-DDTPAIDSVLECDTKRQNLLNREKTITQAINNGT 91 (443)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~G~i~~~~~------~~i~~l~Q~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~ 91 (443)
++|++.+.|.+.|+ +|+|.+... -.++|++|++.. ...|+.+.+.-..
T Consensus 49 STLlk~l~Gl~~p~----~G~I~~~g~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~--------------------- 103 (214)
T 1sgw_A 49 TTLLKTISTYLKPL----KGEIIYNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVA--------------------- 103 (214)
T ss_dssp HHHHHHHTTSSCCS----EEEEEETTEEGGGGGGGEEEECSSCCCCTTSBHHHHHHHHH---------------------
T ss_pred HHHHHHHhcCCCCC----CeEEEECCEEhhhhcCcEEEEeCCCcCCCCCCHHHHHHHHH---------------------
Confidence 56667776666655 499987531 259999999864 3345554432100
Q ss_pred CChhhHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCCChhhhhccCCCCChHHHH-------------------------
Q psy208 92 ADANMSTELTQVFAELEAIEADKAPARASVILAGLGFTPEMQKRATKHFSGGWRK------------------------- 146 (443)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~------------------------- 146 (443)
.+... ..+ +.++..+++.+|++.. ++++.+|||||||
T Consensus 104 --------------~~~~~-~~~-~~~~~~~l~~~gl~~~--~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD 165 (214)
T 1sgw_A 104 --------------SLYGV-KVN-KNEIMDALESVEVLDL--KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAID 165 (214)
T ss_dssp --------------HHTTC-CCC-HHHHHHHHHHTTCCCT--TSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSC
T ss_pred --------------HhcCC-chH-HHHHHHHHHHcCCCcC--CCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCC
Confidence 00001 122 4678889999999854 8899999999999
Q ss_pred -HHHHHHHHHhhh---CCCeEEEEecCHHHHhccCCcEEEEeCCee
Q psy208 147 -MAIIWLENYLQN---WPTTLLVVSHDRHFLDSVPTDIFHLHSQRI 188 (443)
Q Consensus 147 -~~i~wL~~~L~~---~~~tviiVSHDr~fLd~v~~~i~~l~~g~i 188 (443)
.+...+.+.|++ .+.|||+||||.+++..+|++|+.+ .++|
T Consensus 166 ~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~v~~~-~~~~ 210 (214)
T 1sgw_A 166 EDSKHKVLKSILEILKEKGIVIISSREELSYCDVNENLHKY-STKI 210 (214)
T ss_dssp TTTHHHHHHHHHHHHHHHSEEEEEESSCCTTSSEEEEGGGG-BC--
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEe-CCcc
Confidence 344444444432 3679999999999999999988754 4433
No 169
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.07 E-value=1.9e-13 Score=136.12 Aligned_cols=142 Identities=24% Similarity=0.322 Sum_probs=90.8
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCC-------CEEEEECCCCCcHHHHHHHHHcCC----CCCCceEEEc-------
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLE-------SRICIVGDNGAGKTTLLKIIMGII----SPTAGTRTVH------- 337 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~G-------e~i~iiG~NGsGKSTLlk~l~G~~----~p~~G~i~~~------- 337 (443)
.++.++++..|+ ...+++++++.|.+| +.++|+||||+|||||+++|+|.+ .|++|.+...
T Consensus 18 ~lr~~~l~~~~g-~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~ 96 (334)
T 1in4_A 18 FLRPKSLDEFIG-QENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAI 96 (334)
T ss_dssp TTSCSSGGGCCS-CHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHH
T ss_pred HcCCccHHHccC-cHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHH
Confidence 355667777774 467899999999877 899999999999999999999988 6677765421
Q ss_pred ----CceEEEEeccCcccccccchhHHHHHHH---hCC-------CCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHH
Q psy208 338 ----RNLKFGYFSQHHVDQLDMNLRCVQLLEA---AFP-------GKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSR 403 (443)
Q Consensus 338 ----~~~~ig~~~Q~~~~~l~~~~~~~~~~~~---~~~-------~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqR 403 (443)
....+.|++|.+ .+.. +..+.+.. ... ......+...+..+++.. ...++..||+|+++|
T Consensus 97 ~~~~~~~~v~~iDE~~--~l~~--~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~--at~~~~~Ls~~l~sR 170 (334)
T 1in4_A 97 LTSLERGDVLFIDEIH--RLNK--AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVG--ATTRSGLLSSPLRSR 170 (334)
T ss_dssp HHHCCTTCEEEEETGG--GCCH--HHHHHHHHHHHTSCCCC---------------CCCEEEE--EESCGGGSCHHHHTT
T ss_pred HHHccCCCEEEEcchh--hcCH--HHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEE--ecCCcccCCHHHHHh
Confidence 123588888754 2332 33333321 111 111223334455566642 456788999999999
Q ss_pred HHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHcc
Q psy208 404 VAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINK 440 (443)
Q Consensus 404 l~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~ 440 (443)
+.++ .+||+.+.+.+.+.|.+
T Consensus 171 ~~l~----------------~~Ld~~~~~~l~~iL~~ 191 (334)
T 1in4_A 171 FGII----------------LELDFYTVKELKEIIKR 191 (334)
T ss_dssp CSEE----------------EECCCCCHHHHHHHHHH
T ss_pred cCce----------------eeCCCCCHHHHHHHHHH
Confidence 8554 56666666676666654
No 170
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.07 E-value=1.3e-09 Score=104.73 Aligned_cols=64 Identities=17% Similarity=0.279 Sum_probs=50.1
Q ss_pred hccCCCCChHHHH--------------------------HHHHHHHHHhhhC--CCeEEEEecCHHHHhccCCcEEEEeC
Q psy208 134 KRATKHFSGGWRK--------------------------MAIIWLENYLQNW--PTTLLVVSHDRHFLDSVPTDIFHLHS 185 (443)
Q Consensus 134 ~~~~~~LSGGqr~--------------------------~~i~wL~~~L~~~--~~tviiVSHDr~fLd~v~~~i~~l~~ 185 (443)
++++.+||||||| .+...+.+.|+++ +.|||+||||.+++. .||+|+.|++
T Consensus 150 ~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~~~~~~-~~d~i~~l~~ 228 (260)
T 2ghi_A 150 GNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTIS-SAESIILLNK 228 (260)
T ss_dssp SSSSBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSSGGGST-TCSEEEEEET
T ss_pred cCCcCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHH-hCCEEEEEEC
Confidence 4678999999999 4555555555432 679999999999986 4999999999
Q ss_pred CeeEEEcCChhHHH
Q psy208 186 QRIDTYRGNYEAFD 199 (443)
Q Consensus 186 g~i~~~~G~y~~y~ 199 (443)
|++. ..|+.++..
T Consensus 229 G~i~-~~g~~~~l~ 241 (260)
T 2ghi_A 229 GKIV-EKGTHKDLL 241 (260)
T ss_dssp TEEE-EEECHHHHH
T ss_pred CEEE-EECCHHHHH
Confidence 9996 457776653
No 171
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.05 E-value=1.7e-13 Score=133.07 Aligned_cols=136 Identities=16% Similarity=0.131 Sum_probs=82.9
Q ss_pred CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCce-----------EEEEeccCcccccccchh
Q psy208 290 KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNL-----------KFGYFSQHHVDQLDMNLR 358 (443)
Q Consensus 290 ~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~-----------~ig~~~Q~~~~~l~~~~~ 358 (443)
..+|+++++.+++| ++|+||||||||||+|+|+|...+ |.+.+.... .+++++|... ...+...
T Consensus 33 ~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~-~~~p~i~ 107 (274)
T 2x8a_A 33 PDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELLNMYVGESERAVRQVFQRAK-NSAPCVI 107 (274)
T ss_dssp HHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTCSSTTHHHHHHHHHHHHHHH-HTCSEEE
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHHhhhhhHHHHHHHHHHHHHH-hcCCCeE
Confidence 45789999999999 999999999999999999999876 555553211 1112222100 0000000
Q ss_pred HHHHHHHhCCCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCC------------CC
Q psy208 359 CVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTN------------HL 426 (443)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn------------~L 426 (443)
.++.+.......... ..+......++.+..|||||+||+.|++++..+|++| |||+. .-
T Consensus 108 ~~Deid~~~~~r~~~-------~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRfd~~i~~~~P 178 (274)
T 2x8a_A 108 FFDEVDALCPRRSDR-------ETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDII--DPAILRPGRLDKTLFVGLP 178 (274)
T ss_dssp EEETCTTTCC----------------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSSCEEEECCSC
T ss_pred eeehhhhhhcccCCC-------cchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhC--CHhhcCcccCCeEEEeCCc
Confidence 000000000000000 0111123456677889999999999999999999975 99864 34
Q ss_pred CHHHHHHHHHHHc
Q psy208 427 DIETIEALGKAIN 439 (443)
Q Consensus 427 D~~s~~~l~~~L~ 439 (443)
|...+..+.+.+.
T Consensus 179 ~~~~r~~il~~~~ 191 (274)
T 2x8a_A 179 PPADRLAILKTIT 191 (274)
T ss_dssp CHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHH
Confidence 7777877777654
No 172
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.05 E-value=7.3e-11 Score=103.98 Aligned_cols=75 Identities=23% Similarity=0.326 Sum_probs=55.1
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCceEEEEeccCcccccccchhHHHHHHHhCCCCCHHHHHHHHhc
Q psy208 302 LESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGG 381 (443)
Q Consensus 302 ~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ig~~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 381 (443)
+|+.++|+||||||||||+++|++...+ +|. .+.|++... +...
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~-------~~~~~~~~~---~~~~------------------------- 78 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALE-AGK-------NAAYIDAAS---MPLT------------------------- 78 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHT-TTC-------CEEEEETTT---SCCC-------------------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHh-cCC-------cEEEEcHHH---hhHH-------------------------
Confidence 8999999999999999999999998876 452 233444321 1000
Q ss_pred CCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHcc
Q psy208 382 FGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINK 440 (443)
Q Consensus 382 ~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~ 440 (443)
+++.+|++||||||+. ++...++.|.+.+..
T Consensus 79 ---------------------------~~~~~~~lLilDE~~~-~~~~~~~~l~~li~~ 109 (149)
T 2kjq_A 79 ---------------------------DAAFEAEYLAVDQVEK-LGNEEQALLFSIFNR 109 (149)
T ss_dssp ---------------------------GGGGGCSEEEEESTTC-CCSHHHHHHHHHHHH
T ss_pred ---------------------------HHHhCCCEEEEeCccc-cChHHHHHHHHHHHH
Confidence 2356899999999998 666558788777654
No 173
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.04 E-value=2.4e-10 Score=113.71 Aligned_cols=115 Identities=17% Similarity=0.187 Sum_probs=63.3
Q ss_pred EEEEECCCCCcHHHHHHHHHc-CCCCCCceEEEcC---------ceEEEEeccCcccccccchhHHHHHHHhCCCCCHHH
Q psy208 305 RICIVGDNGAGKTTLLKIIMG-IISPTAGTRTVHR---------NLKFGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEE 374 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G-~~~p~~G~i~~~~---------~~~ig~~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~ 374 (443)
.+.|+||||+|||||+++|++ ++.|+.|.+.+.+ ...++++++.....+..... .......
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~ 108 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDM---------GNNDRIV 108 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECSSEEEECCC-------------CCHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecccceEEecHhhc---------CCcchHH
Confidence 399999999999999999999 7899999876542 12355666543221111100 0011112
Q ss_pred HHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHcccc
Q psy208 375 YRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKYT 442 (443)
Q Consensus 375 ~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~~ 442 (443)
++..+..+.-... ..... .||| +..+|+++|||||++ ||..+...|.+.|.+++
T Consensus 109 ~~~~i~~~~~~~~-~~~~~-~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~ 162 (354)
T 1sxj_E 109 IQELLKEVAQMEQ-VDFQD-SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYS 162 (354)
T ss_dssp HHHHHHHHTTTTC-------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHhcc-ccccc-cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhc
Confidence 3333332211100 01111 4566 778999999999999 99999999999998754
No 174
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=99.04 E-value=9.8e-11 Score=121.74 Aligned_cols=56 Identities=14% Similarity=0.121 Sum_probs=47.8
Q ss_pred EEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEc
Q psy208 278 QLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVH 337 (443)
Q Consensus 278 ~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~ 337 (443)
.+.+++... ..+|+++||+|++ ++++|+|||||||||||++|+|+++|++|+|.+.
T Consensus 8 ~l~~l~~~~---~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~ 63 (483)
T 3euj_A 8 KFRSLTLIN---WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFR 63 (483)
T ss_dssp EEEEEEEEE---ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCC
T ss_pred ceeEEEEec---cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEEC
Confidence 345555432 3489999999999 9999999999999999999999999999998653
No 175
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.03 E-value=3.3e-09 Score=103.62 Aligned_cols=140 Identities=12% Similarity=0.095 Sum_probs=84.2
Q ss_pred hHHHHHHHccccccCCCCCcceEEecCCceEEEEecccCCCCchHHHHHHhccHHHHHHHHHHHHHHHHHhCCCCChhhH
Q psy208 18 SEFYCKALTLHLHLEGGMVSGQLRIPSHISVLHVEQEVVGDDTPAIDSVLECDTKRQNLLNREKTITQAINNGTADANMS 97 (443)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~G~i~~~~~~~i~~l~Q~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~ 97 (443)
=++|++.+.|.+.|+. |+|.+.+ +++|++|++.....|+.+.+. +.. . ..
T Consensus 77 KSTLlk~l~Gl~~p~~----G~I~~~g--~i~~v~Q~~~l~~~tv~enl~-~~~-~-------------------~~--- 126 (290)
T 2bbs_A 77 KTSLLMMIMGELEPSE----GKIKHSG--RISFCSQNSWIMPGTIKENII-GVS-Y-------------------DE--- 126 (290)
T ss_dssp HHHHHHHHTTSSCEEE----EEEECCS--CEEEECSSCCCCSSBHHHHHH-TTC-C-------------------CH---
T ss_pred HHHHHHHHhcCCCCCC----cEEEECC--EEEEEeCCCccCcccHHHHhh-Ccc-c-------------------ch---
Confidence 3566667766666554 9999876 699999998654346666554 210 0 00
Q ss_pred HHHHHHHHHHhhcccCCHHHHHHHHHHhCCCCh-hhhhccCCCCChHHHH--------------------------HHHH
Q psy208 98 TELTQVFAELEAIEADKAPARASVILAGLGFTP-EMQKRATKHFSGGWRK--------------------------MAII 150 (443)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~rv~~~L~~lgl~~-~~~~~~~~~LSGGqr~--------------------------~~i~ 150 (443)
..+.+..+ .. . +...+..+.... ...++++.+||||||| .+..
T Consensus 127 ~~~~~~~~---~~---~----l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~ 196 (290)
T 2bbs_A 127 YRYRSVIK---AC---Q----LEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEK 196 (290)
T ss_dssp HHHHHHHH---HT---T----CHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHH
T ss_pred HHHHHHHH---Hh---C----hHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHH
Confidence 00000000 00 0 112233332211 1134567899999999 5666
Q ss_pred HHHHHh-hh--CCCeEEEEecCHHHHhccCCcEEEEeCCeeEEEcCChhHHH
Q psy208 151 WLENYL-QN--WPTTLLVVSHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAFD 199 (443)
Q Consensus 151 wL~~~L-~~--~~~tviiVSHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y~ 199 (443)
.+.+.+ +. .+.|||+||||.+++. .||+|+.|++|++. +.|++++..
T Consensus 197 ~i~~~ll~~~~~~~tviivtHd~~~~~-~~d~i~~l~~G~i~-~~g~~~~l~ 246 (290)
T 2bbs_A 197 EIFESCVCKLMANKTRILVTSKMEHLK-KADKILILHEGSSY-FYGTFSELQ 246 (290)
T ss_dssp HHHHHCCCCCTTTSEEEEECCCHHHHH-HSSEEEEEETTEEE-EEECHHHHH
T ss_pred HHHHHHHHHhhCCCEEEEEecCHHHHH-cCCEEEEEECCeEE-EeCCHHHHh
Confidence 777753 22 2679999999999986 59999999999996 457776653
No 176
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.03 E-value=1.1e-09 Score=102.79 Aligned_cols=31 Identities=19% Similarity=0.209 Sum_probs=28.3
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHHc--CCCC
Q psy208 299 GATLESRICIVGDNGAGKTTLLKIIMG--IISP 329 (443)
Q Consensus 299 ~i~~Ge~i~iiG~NGsGKSTLlk~l~G--~~~p 329 (443)
-|++|++++|+||||||||||++.|++ ..+|
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~ 52 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPI 52 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCG
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCch
Confidence 488999999999999999999999999 5665
No 177
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.98 E-value=2.4e-11 Score=120.86 Aligned_cols=115 Identities=17% Similarity=0.128 Sum_probs=70.9
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-----------------eEEEEeccCcccccccchhHHHH
Q psy208 300 ATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-----------------LKFGYFSQHHVDQLDMNLRCVQL 362 (443)
Q Consensus 300 i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------------~~ig~~~Q~~~~~l~~~~~~~~~ 362 (443)
..+|++++|+||||||||||+++|+|+++|++|+|.+... ..+.|++|.. .+++..++.++
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~--~~~p~~~v~e~ 203 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSY--GADPAAVAYDA 203 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCT--TCCHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccc--cCCHHHHHHHH
Confidence 4689999999999999999999999999999999876421 1244777753 34455555555
Q ss_pred HHHhCC-CCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCCHH
Q psy208 363 LEAAFP-GKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIE 429 (443)
Q Consensus 363 ~~~~~~-~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD~~ 429 (443)
+..... ... .-++...|... .....+..|| .+++++..++.+++||.+|. .|..
T Consensus 204 l~~~~~~~~d----~vliDtaG~~~-~~~~l~~eL~-------~i~ral~~de~llvLDa~t~-~~~~ 258 (328)
T 3e70_C 204 IQHAKARGID----VVLIDTAGRSE-TNRNLMDEMK-------KIARVTKPNLVIFVGDALAG-NAIV 258 (328)
T ss_dssp HHHHHHHTCS----EEEEEECCSCC-TTTCHHHHHH-------HHHHHHCCSEEEEEEEGGGT-THHH
T ss_pred HHHHHhccch----hhHHhhccchh-HHHHHHHHHH-------HHHHHhcCCCCEEEEecHHH-HHHH
Confidence 432100 000 00122223211 1112223343 38899999999999996654 4443
No 178
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=98.94 E-value=9.9e-09 Score=109.61 Aligned_cols=65 Identities=20% Similarity=0.247 Sum_probs=51.0
Q ss_pred hhccCCCCChHHHH--------------------------HHHHHHHHHhhhC--CCeEEEEecCHHHHhccCCcEEEEe
Q psy208 133 QKRATKHFSGGWRK--------------------------MAIIWLENYLQNW--PTTLLVVSHDRHFLDSVPTDIFHLH 184 (443)
Q Consensus 133 ~~~~~~~LSGGqr~--------------------------~~i~wL~~~L~~~--~~tviiVSHDr~fLd~v~~~i~~l~ 184 (443)
.+....+||||||| .+...+.+.|++. +.|+|+||||.+.+. .||+|++|+
T Consensus 474 ~~~~~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~d~i~~l~ 552 (582)
T 3b5x_A 474 IGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIE-QADEILVVD 552 (582)
T ss_pred hcCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH-hCCEEEEEE
Confidence 45667899999999 4445555555432 679999999999987 699999999
Q ss_pred CCeeEEEcCChhHHH
Q psy208 185 SQRIDTYRGNYEAFD 199 (443)
Q Consensus 185 ~g~i~~~~G~y~~y~ 199 (443)
+|++. ..|++++..
T Consensus 553 ~G~i~-~~g~~~~l~ 566 (582)
T 3b5x_A 553 EGEII-ERGRHADLL 566 (582)
T ss_pred CCEEE-EECCHHHHH
Confidence 99996 468876653
No 179
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.93 E-value=4.5e-11 Score=117.43 Aligned_cols=99 Identities=11% Similarity=-0.002 Sum_probs=62.6
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEE---cCc-----------eEEEEeccCcccc------------
Q psy208 299 GATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTV---HRN-----------LKFGYFSQHHVDQ------------ 352 (443)
Q Consensus 299 ~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~---~~~-----------~~ig~~~Q~~~~~------------ 352 (443)
++..|++++|+||||||||||||+|+|+.+|++|+|.+ .+. ..+||++|.|...
T Consensus 165 ~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~~ 244 (301)
T 1u0l_A 165 EYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEEL 244 (301)
T ss_dssp HHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHHH
T ss_pred HHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHHH
Confidence 34568999999999999999999999999999999886 210 1368899886311
Q ss_pred --cccchhHHHHHHH--h-CCCCCHHHHHHHHhcCCCChhhhhccCCCCCH
Q psy208 353 --LDMNLRCVQLLEA--A-FPGKPQEEYRRQLGGFGVSGDLALQFVGSLSG 398 (443)
Q Consensus 353 --l~~~~~~~~~~~~--~-~~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSg 398 (443)
+.+..++ +++.. . ........+.++|+.+++..+..++++..||+
T Consensus 245 ~~l~~~~~~-~n~~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~lse 294 (301)
T 1u0l_A 245 KHYFKEFGD-KQCFFSDCNHVDEPECGVKEAVENGEIAESRYENYVKMFYE 294 (301)
T ss_dssp GGGSTTSSS-CCCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred HHHHHhccc-ccCcCCCCcCCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 1222222 21110 0 01122346788999999976677888888885
No 180
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=98.91 E-value=6.8e-09 Score=105.34 Aligned_cols=79 Identities=8% Similarity=0.151 Sum_probs=61.5
Q ss_pred HHHHHHHHhCCCChhhhhccCCC-----------CChHHHH--------------------------HHHHHHHHHhhhC
Q psy208 117 ARASVILAGLGFTPEMQKRATKH-----------FSGGWRK--------------------------MAIIWLENYLQNW 159 (443)
Q Consensus 117 ~rv~~~L~~lgl~~~~~~~~~~~-----------LSGGqr~--------------------------~~i~wL~~~L~~~ 159 (443)
.++.++|..+|+.+ ..++.+.. ||||||| .....+.+.|++.
T Consensus 123 ~~v~~~l~~~~L~~-~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~ 201 (390)
T 3gd7_A 123 QEIWKVADEVGLRS-VIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQA 201 (390)
T ss_dssp HHHHHHHHHTTCHH-HHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCCHH-HHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHH
Confidence 46778888899874 46788877 9999999 4555666666543
Q ss_pred --CCeEEEEecCHHHHhccCCcEEEEeCCeeEEEcCChhHH
Q psy208 160 --PTTLLVVSHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAF 198 (443)
Q Consensus 160 --~~tviiVSHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y 198 (443)
+.|+|+||||.+.+. .||+|++|++|++..+ |+..+.
T Consensus 202 ~~~~tvi~vtHd~e~~~-~aDri~vl~~G~i~~~-g~~~el 240 (390)
T 3gd7_A 202 FADCTVILCEARIEAML-ECDQFLVIEENKVRQY-DSILEL 240 (390)
T ss_dssp TTTSCEEEECSSSGGGT-TCSEEEEEETTEEEEE-SSHHHH
T ss_pred hCCCEEEEEEcCHHHHH-hCCEEEEEECCEEEEE-CCHHHH
Confidence 679999999998775 4999999999999754 776543
No 181
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=98.91 E-value=5.9e-10 Score=117.43 Aligned_cols=51 Identities=22% Similarity=0.275 Sum_probs=47.9
Q ss_pred ccCCCC-CHHHHHHHHHHHHhccCC--CeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 391 QFVGSL-SGGQKSRVAFARMCMAAP--NFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 391 ~~~~~L-SgGekqRl~lA~al~~~p--~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
+++..| ||||+|||+||++++.+| ++|||||||+|||+.+...+.+.|.++
T Consensus 392 ~~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~ 445 (517)
T 4ad8_A 392 GPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRL 445 (517)
T ss_dssp CBSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHH
T ss_pred ccHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHH
Confidence 577888 999999999999999999 999999999999999999999998764
No 182
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=98.89 E-value=7.9e-09 Score=110.48 Aligned_cols=66 Identities=17% Similarity=0.258 Sum_probs=51.9
Q ss_pred hhccCCCCChHHHH--------------------------HHHHHHHHHhhh--CCCeEEEEecCHHHHhccCCcEEEEe
Q psy208 133 QKRATKHFSGGWRK--------------------------MAIIWLENYLQN--WPTTLLVVSHDRHFLDSVPTDIFHLH 184 (443)
Q Consensus 133 ~~~~~~~LSGGqr~--------------------------~~i~wL~~~L~~--~~~tviiVSHDr~fLd~v~~~i~~l~ 184 (443)
.++...+||||||| .+...+.+.|++ .+.|+|+||||...+. .||+|++|+
T Consensus 473 ~~~~~~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~-~~d~i~vl~ 551 (587)
T 3qf4_A 473 VERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTAL-LADKILVLH 551 (587)
T ss_dssp ECSSSCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCHHHHT-TSSEEEEEE
T ss_pred hcCCCCCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhCCCCEEEEEecChHHHH-hCCEEEEEE
Confidence 46778999999999 344445555533 3689999999999986 799999999
Q ss_pred CCeeEEEcCChhHHHH
Q psy208 185 SQRIDTYRGNYEAFDK 200 (443)
Q Consensus 185 ~g~i~~~~G~y~~y~~ 200 (443)
+|++.. .|++++..+
T Consensus 552 ~G~i~~-~g~~~el~~ 566 (587)
T 3qf4_A 552 EGKVAG-FGTHKELLE 566 (587)
T ss_dssp TTEEEE-EECHHHHHH
T ss_pred CCEEEE-ECCHHHHHh
Confidence 999974 588877654
No 183
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=98.87 E-value=8.7e-09 Score=110.41 Aligned_cols=64 Identities=14% Similarity=0.141 Sum_probs=49.2
Q ss_pred ccCCCCChHHHH--------------------------HHHHHHHHHhhh--CCCeEEEEecCHHHHhccCCcEEEEeCC
Q psy208 135 RATKHFSGGWRK--------------------------MAIIWLENYLQN--WPTTLLVVSHDRHFLDSVPTDIFHLHSQ 186 (443)
Q Consensus 135 ~~~~~LSGGqr~--------------------------~~i~wL~~~L~~--~~~tviiVSHDr~fLd~v~~~i~~l~~g 186 (443)
....+||||||| .+...+.+.|++ .+.|+|+||||.+.+.. ||+|++|++|
T Consensus 487 ~~g~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G 565 (598)
T 3qf4_B 487 DNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKN-ADLIIVLRDG 565 (598)
T ss_dssp HHHTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCCTTHHHH-CSEEEEECSS
T ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc-CCEEEEEECC
Confidence 445799999999 333344444432 37899999999999976 9999999999
Q ss_pred eeEEEcCChhHHHH
Q psy208 187 RIDTYRGNYEAFDK 200 (443)
Q Consensus 187 ~i~~~~G~y~~y~~ 200 (443)
++. ..|++++...
T Consensus 566 ~i~-~~g~~~~l~~ 578 (598)
T 3qf4_B 566 EIV-EMGKHDELIQ 578 (598)
T ss_dssp SEE-ECSCHHHHHH
T ss_pred EEE-EECCHHHHHh
Confidence 996 5688877643
No 184
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=98.86 E-value=1.8e-08 Score=107.50 Aligned_cols=65 Identities=20% Similarity=0.193 Sum_probs=49.9
Q ss_pred hhccCCCCChHHHH--------------------------HHHHHHHHHhhh--CCCeEEEEecCHHHHhccCCcEEEEe
Q psy208 133 QKRATKHFSGGWRK--------------------------MAIIWLENYLQN--WPTTLLVVSHDRHFLDSVPTDIFHLH 184 (443)
Q Consensus 133 ~~~~~~~LSGGqr~--------------------------~~i~wL~~~L~~--~~~tviiVSHDr~fLd~v~~~i~~l~ 184 (443)
.+....+||||||| .+...+.+.|++ .+.|+|+||||.+.+. .||+|++|+
T Consensus 474 ~~~~~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~d~i~~l~ 552 (582)
T 3b60_A 474 IGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIE-QADEIVVVE 552 (582)
T ss_dssp CCTTSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTT-TCSEEEEEE
T ss_pred ccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEeccHHHHH-hCCEEEEEE
Confidence 34567899999999 344455555533 2789999999999886 599999999
Q ss_pred CCeeEEEcCChhHHH
Q psy208 185 SQRIDTYRGNYEAFD 199 (443)
Q Consensus 185 ~g~i~~~~G~y~~y~ 199 (443)
+|++.. .|++++..
T Consensus 553 ~G~i~~-~g~~~~l~ 566 (582)
T 3b60_A 553 DGIIVE-RGTHSELL 566 (582)
T ss_dssp TTEEEE-EECHHHHH
T ss_pred CCEEEE-ecCHHHHH
Confidence 999974 58876653
No 185
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=98.83 E-value=1.3e-10 Score=114.89 Aligned_cols=34 Identities=35% Similarity=0.398 Sum_probs=30.6
Q ss_pred CEEEEECCCCCcHHHHHHHHHcCC--------CCCCceEEEc
Q psy208 304 SRICIVGDNGAGKTTLLKIIMGII--------SPTAGTRTVH 337 (443)
Q Consensus 304 e~i~iiG~NGsGKSTLlk~l~G~~--------~p~~G~i~~~ 337 (443)
++++|+|+||||||||||+|.|.. .|+.|+|.++
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~id 46 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVD 46 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEE
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCcc
Confidence 478999999999999999999997 7899988764
No 186
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=98.83 E-value=2.2e-08 Score=106.77 Aligned_cols=64 Identities=17% Similarity=0.195 Sum_probs=49.1
Q ss_pred hccCCCCChHHHH--------------------------HHHHHHHHHhhh--CCCeEEEEecCHHHHhccCCcEEEEeC
Q psy208 134 KRATKHFSGGWRK--------------------------MAIIWLENYLQN--WPTTLLVVSHDRHFLDSVPTDIFHLHS 185 (443)
Q Consensus 134 ~~~~~~LSGGqr~--------------------------~~i~wL~~~L~~--~~~tviiVSHDr~fLd~v~~~i~~l~~ 185 (443)
+....+||||||| .+...+.+.|++ .+.|+|+||||.+++.. ||+|++|++
T Consensus 472 ~~~g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~ 550 (578)
T 4a82_A 472 GERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITH-ADKIVVIEN 550 (578)
T ss_dssp CGGGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTT-CSEEEEEET
T ss_pred ccCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc-CCEEEEEEC
Confidence 4556899999999 334444444432 36799999999999865 999999999
Q ss_pred CeeEEEcCChhHHH
Q psy208 186 QRIDTYRGNYEAFD 199 (443)
Q Consensus 186 g~i~~~~G~y~~y~ 199 (443)
|++.. .|++++..
T Consensus 551 G~i~~-~g~~~el~ 563 (578)
T 4a82_A 551 GHIVE-TGTHRELI 563 (578)
T ss_dssp TEEEE-EECHHHHH
T ss_pred CEEEE-ECCHHHHH
Confidence 99974 58877654
No 187
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.83 E-value=9.7e-10 Score=103.14 Aligned_cols=37 Identities=14% Similarity=0.150 Sum_probs=22.9
Q ss_pred ceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHH-cCC
Q psy208 291 PILTNVCLGATLESRICIVGDNGAGKTTLLKIIM-GII 327 (443)
Q Consensus 291 ~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~-G~~ 327 (443)
....++||++.+|++++|+||||||||||+++|+ |++
T Consensus 15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp -------CCEECCCEEEEECSCC----CHHHHHHC---
T ss_pred cccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 4678999999999999999999999999999999 998
No 188
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=98.82 E-value=9.6e-09 Score=104.66 Aligned_cols=34 Identities=24% Similarity=0.293 Sum_probs=28.9
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHH--HHcCCCCCCc
Q psy208 299 GATLESRICIVGDNGAGKTTLLKI--IMGIISPTAG 332 (443)
Q Consensus 299 ~i~~Ge~i~iiG~NGsGKSTLlk~--l~G~~~p~~G 332 (443)
-|.+|++++|+||||||||||++. +.+..+|+.|
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~G 209 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIG 209 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGT
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccC
Confidence 478999999999999999999994 4677777655
No 189
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=98.82 E-value=2.5e-08 Score=106.81 Aligned_cols=62 Identities=19% Similarity=0.221 Sum_probs=47.3
Q ss_pred cCCCCChHHHH--------------------------HHHHHHHHHhhh--CCCeEEEEecCHHHHhccCCcEEEEeCCe
Q psy208 136 ATKHFSGGWRK--------------------------MAIIWLENYLQN--WPTTLLVVSHDRHFLDSVPTDIFHLHSQR 187 (443)
Q Consensus 136 ~~~~LSGGqr~--------------------------~~i~wL~~~L~~--~~~tviiVSHDr~fLd~v~~~i~~l~~g~ 187 (443)
...+||||||| .+...+.+.|++ .+.|+|+||||.+.+.. ||+|++|++|+
T Consensus 480 ~~~~LSgGq~qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~-~d~i~~l~~G~ 558 (595)
T 2yl4_A 480 KGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHRLSTIKN-ANMVAVLDQGK 558 (595)
T ss_dssp SSCCCCHHHHHHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHTTSEEEEECCCHHHHHH-SSEEEEEETTE
T ss_pred CCCcCCHHHHHHHHHHHHHHcCCCEEEEECcccCCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHc-CCEEEEEECCE
Confidence 45899999999 455555555543 26899999999999865 99999999999
Q ss_pred eEEEcCChhHHH
Q psy208 188 IDTYRGNYEAFD 199 (443)
Q Consensus 188 i~~~~G~y~~y~ 199 (443)
+.. .|++++..
T Consensus 559 i~~-~g~~~~l~ 569 (595)
T 2yl4_A 559 ITE-YGKHEELL 569 (595)
T ss_dssp EEE-EECSCC--
T ss_pred EEE-ECCHHHHH
Confidence 974 47766543
No 190
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=98.82 E-value=2.6e-12 Score=116.82 Aligned_cols=119 Identities=12% Similarity=0.078 Sum_probs=66.5
Q ss_pred CCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-----eEEEEeccCcccccccchhHHHHHHHhCCCCCHHHHHH
Q psy208 303 ESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-----LKFGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRR 377 (443)
Q Consensus 303 Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----~~ig~~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 377 (443)
|++++|+||||||||||+++|++ |.+|.+.+... ...++++|.. ......++.+.+... +..
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~--------~~~ 68 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIINHMVVGGYRPPWE--SDELLALTWKNITDL--------TVN 68 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHHTTCCTTCCCGGG--CHHHHHHHHHHHHHH--------HHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchhhhhccccccCcc--chhHHHHHHHHHHHH--------HHH
Confidence 67899999999999999999997 67888776431 1234444432 111122333322210 011
Q ss_pred H--------HhcCCCChhhhhccCCCC--CHHHHHHHHHHH------HhccCCCeEEEeCCCCCCCHHHHHHHHHHHcc
Q psy208 378 Q--------LGGFGVSGDLALQFVGSL--SGGQKSRVAFAR------MCMAAPNFLVLDEPTNHLDIETIEALGKAINK 440 (443)
Q Consensus 378 ~--------L~~~gl~~~~~~~~~~~L--SgGekqRl~lA~------al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~ 440 (443)
+ +..+. . ....+.+..+ |+|+++++.++. +++.+|....+|+ +||+..+.. .+.+..
T Consensus 69 ~~~~~~~~ild~~~-~-~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~~~~~~ 141 (189)
T 2bdt_A 69 FLLAQNDVVLDYIA-F-PDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL-VEEFES 141 (189)
T ss_dssp HHHTTCEEEEESCC-C-HHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH-HHHHHH
T ss_pred HHhcCCcEEEeecc-C-HHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-HHHHhh
Confidence 1 11111 1 1111222345 888888877777 7788888777883 788877766 555543
No 191
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.82 E-value=2.6e-10 Score=112.25 Aligned_cols=102 Identities=12% Similarity=0.119 Sum_probs=56.1
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEE---cCc--------eE--EEEeccCccccc-cc-chhHHHHH
Q psy208 299 GATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTV---HRN--------LK--FGYFSQHHVDQL-DM-NLRCVQLL 363 (443)
Q Consensus 299 ~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~---~~~--------~~--ig~~~Q~~~~~l-~~-~~~~~~~~ 363 (443)
++.+|++++|+||||||||||+|+|+|..+|++|+|.. .+. .. +||++|.|.... .. ..+. +.+
T Consensus 169 ~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~-e~l 247 (307)
T 1t9h_A 169 PHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE-EEL 247 (307)
T ss_dssp GGGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH-HHH
T ss_pred hhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH-HHH
Confidence 34579999999999999999999999999999999875 110 11 589999864221 11 2233 322
Q ss_pred HH-------h-----CC-----CCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHH
Q psy208 364 EA-------A-----FP-----GKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKS 402 (443)
Q Consensus 364 ~~-------~-----~~-----~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekq 402 (443)
.. . +. ......+.++++.+++.... ......|+.|+++
T Consensus 248 ~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~r-~~~y~~lls~~~~ 302 (307)
T 1t9h_A 248 GYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYR-YDHYVEFMTEIKD 302 (307)
T ss_dssp GGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHHH-HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHHH-HHHHHHHHHHHhh
Confidence 10 0 11 12234678899999987433 3444556667766
No 192
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=98.79 E-value=4.5e-09 Score=106.02 Aligned_cols=51 Identities=31% Similarity=0.425 Sum_probs=45.9
Q ss_pred ccCCCCCHHHHHHH------HHHHHhccC-CCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 391 QFVGSLSGGQKSRV------AFARMCMAA-PNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 391 ~~~~~LSgGekqRl------~lA~al~~~-p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
+++..|||||+||+ ++|++++.+ |++|||||||++||+..+..+.+.|.++
T Consensus 276 ~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~ 333 (371)
T 3auy_A 276 LTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKV 333 (371)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHC
T ss_pred cchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHh
Confidence 56789999999988 557888899 9999999999999999999999998764
No 193
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=98.77 E-value=4.6e-09 Score=107.92 Aligned_cols=52 Identities=31% Similarity=0.462 Sum_probs=47.8
Q ss_pred hccCCCCCHHHHHHHHHHHHhc----cCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 390 LQFVGSLSGGQKSRVAFARMCM----AAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 390 ~~~~~~LSgGekqRl~lA~al~----~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
.+++..||||||+|++||++|+ .+|++|||||||++||+..+..|.+.|.++
T Consensus 328 ~~~~~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~ 383 (430)
T 1w1w_A 328 FKDMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRH 383 (430)
T ss_dssp CCCGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHH
T ss_pred ccccccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHH
Confidence 4567889999999999999999 589999999999999999999999998765
No 194
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.77 E-value=1.1e-08 Score=100.04 Aligned_cols=100 Identities=15% Similarity=0.176 Sum_probs=64.5
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCceEEEEeccCcccccccchhHHHHHHHhCCCCCHHHHHHHHh
Q psy208 301 TLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLG 380 (443)
Q Consensus 301 ~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ig~~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~ 380 (443)
.+|++++|+|+|||||||+++.|++.+.+++|. ++.++.+++.. ....+. +..+..
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~-------~V~lv~~D~~r-----~~a~eq------------L~~~~~ 158 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHK-------KIAFITTDTYR-----IAAVEQ------------LKTYAE 158 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCC-------CEEEEECCCSS-----TTHHHH------------HHHHHT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCC-------EEEEEecCccc-----chHHHH------------HHHHHH
Confidence 468999999999999999999999999887782 45666666421 111222 222223
Q ss_pred cCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCCHHHHHHHH
Q psy208 381 GFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALG 435 (443)
Q Consensus 381 ~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~ 435 (443)
.+|+... ...+ +..-+.+|++ +.+|+++|+| |+++|......+.
T Consensus 159 ~~gl~~~------~~~~-~~~l~~al~~--~~~~dlvIiD--T~G~~~~~~~~~~ 202 (296)
T 2px0_A 159 LLQAPLE------VCYT-KEEFQQAKEL--FSEYDHVFVD--TAGRNFKDPQYID 202 (296)
T ss_dssp TTTCCCC------BCSS-HHHHHHHHHH--GGGSSEEEEE--CCCCCTTSHHHHH
T ss_pred hcCCCeE------ecCC-HHHHHHHHHH--hcCCCEEEEe--CCCCChhhHHHHH
Confidence 3443210 0122 2334566664 4899999999 8899986654443
No 195
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.76 E-value=2.6e-11 Score=122.68 Aligned_cols=130 Identities=12% Similarity=0.058 Sum_probs=80.5
Q ss_pred ceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcC----c--eEEEEeccCcccccccchhHHHHHH
Q psy208 291 PILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR----N--LKFGYFSQHHVDQLDMNLRCVQLLE 364 (443)
Q Consensus 291 ~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~----~--~~ig~~~Q~~~~~l~~~~~~~~~~~ 364 (443)
.+++++++.+++|++++|+||||||||||+++|+|. .+|.+.... . ..+|+++|.... +..+.+....+.
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~---~~g~~~~~~~~~~~~~~~lg~~~q~~~~-l~dd~~~~~~~~ 232 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLEL---CGGKALNVNLPLDRLNFELGVAIDQFLV-VFEDVKGTGGES 232 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHH---HCCEEECCSSCTTTHHHHHGGGTTCSCE-EETTCCCSTTTT
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhh---cCCcEEEEeccchhHHHHHHHhcchhHH-HHHHHHHHHHHH
Confidence 589999999999999999999999999999999985 467765411 1 124444554311 000000000000
Q ss_pred HhCCCCC----HHHHHHHHh---------------cCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEE-EeCCCC
Q psy208 365 AAFPGKP----QEEYRRQLG---------------GFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLV-LDEPTN 424 (443)
Q Consensus 365 ~~~~~~~----~~~~~~~L~---------------~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLi-LDEPTn 424 (443)
....... ...+...+. ...+.+...+.....+++|+++|+..+.+++..|++++ ||+|+.
T Consensus 233 r~l~~~~~~~~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~~~~~l~~~~~~rl~~~~~l~~~pDLliyLd~~~~ 312 (377)
T 1svm_A 233 RDLPSGQGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPKDYLKHCLERSEF 312 (377)
T ss_dssp TTCCCCSHHHHHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECCCCHHHHHHHHTCTH
T ss_pred hhccccCcchHHHHHHHHhcCCCeEeeccCchhhHHHhhcCcccChhHHhhcHHHHHHHhhhhccCCCCCeEEEEeCCHH
Confidence 0000000 012233332 11222334556778899999999998888889999888 999886
No 196
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.75 E-value=7.8e-10 Score=105.76 Aligned_cols=53 Identities=23% Similarity=0.312 Sum_probs=36.1
Q ss_pred CeEEEeee-EEEeCCCCceeeeeeEEEeC---CCEEEEECCCCCcHHHHHHHHHcCC
Q psy208 275 PILQLSEV-NFEYVPGKPILTNVCLGATL---ESRICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 275 ~~l~~~~l-~~~y~~~~~il~~vsl~i~~---Ge~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
++|+++|+ +++|+++.++|+++||+|.+ |++++|+|++||||||+.++|++.+
T Consensus 16 ~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 16 ALLETGSLLHSPFDEEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp ----------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CceEEcceeeEEecCcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 57999999 99994457899999999999 9999999999999999999999854
No 197
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.70 E-value=1.2e-09 Score=117.18 Aligned_cols=153 Identities=13% Similarity=0.129 Sum_probs=98.6
Q ss_pred eeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCC-ceEEEcC------ceEEEEeccCcccc
Q psy208 280 SEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTA-GTRTVHR------NLKFGYFSQHHVDQ 352 (443)
Q Consensus 280 ~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~-G~i~~~~------~~~ig~~~Q~~~~~ 352 (443)
++++.-|+ ...+++++++.+..|+.++|+||||+|||||+++|++.+++.. |.+.+.. ...++|+++.....
T Consensus 38 ~~l~~i~G-~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~~p~i~~~p~g~~~~ 116 (604)
T 3k1j_A 38 KLIDQVIG-QEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDENMPRIKTVPACQGRR 116 (604)
T ss_dssp SHHHHCCS-CHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTTSCEEEEEETTHHHH
T ss_pred cccceEEC-chhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccccCCcEEEEecchHHH
Confidence 34444454 5678999999999999999999999999999999999999887 5555432 23567776543111
Q ss_pred cccchhHHHHHHHhCC-------------------------C-----CCHHHHHHHHhcCCCChhhhhccCCCCCHHHHH
Q psy208 353 LDMNLRCVQLLEAAFP-------------------------G-----KPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKS 402 (443)
Q Consensus 353 l~~~~~~~~~~~~~~~-------------------------~-----~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekq 402 (443)
+.. ........... . ........+++.+... ....+.+|+|+++
T Consensus 117 ~~e--~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~~----~~~~g~~~~g~~~ 190 (604)
T 3k1j_A 117 IVE--KYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHD----PFQSGGLGTPAHE 190 (604)
T ss_dssp HHH--HHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECCC----CC----CCCCGGG
T ss_pred HHH--HHHHhhccchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEec----hhhcCCccccccc
Confidence 000 00000000000 0 0001122233322111 1223569999999
Q ss_pred HHHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHcc
Q psy208 403 RVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINK 440 (443)
Q Consensus 403 Rl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~ 440 (443)
++..+++...++.+|+|||... |++..+..|.++|.+
T Consensus 191 ~i~~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 191 RVEPGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp GEECCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred cccCceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 9988888889999999999987 899999999998864
No 198
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.66 E-value=5e-10 Score=105.53 Aligned_cols=52 Identities=21% Similarity=0.235 Sum_probs=42.3
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEE
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTV 336 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~ 336 (443)
.|+++|++..|+ . +|++.+ ++++|+|||||||||||++|+|++.|++|.|.+
T Consensus 9 ~l~l~~~~~~~~--~------~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~ 60 (227)
T 1qhl_A 9 SLTLINWNGFFA--R------TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHF 60 (227)
T ss_dssp EEEEEEETTEEE--E------EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC--
T ss_pred EEEEEeeecccC--C------EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEE
Confidence 588888876552 1 466666 899999999999999999999999999998754
No 199
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.63 E-value=1.1e-08 Score=93.39 Aligned_cols=32 Identities=22% Similarity=0.361 Sum_probs=26.8
Q ss_pred eEEEeCCCEEEEECCCCCcHHHHHHHHHcCCC
Q psy208 297 CLGATLESRICIVGDNGAGKTTLLKIIMGIIS 328 (443)
Q Consensus 297 sl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~ 328 (443)
|+++.+|++++|+||||||||||+++|+|+++
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 57788999999999999999999999999974
No 200
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.62 E-value=3e-08 Score=89.08 Aligned_cols=52 Identities=19% Similarity=0.319 Sum_probs=41.2
Q ss_pred EEeeeEEEeCCCCcee--eeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCce
Q psy208 278 QLSEVNFEYVPGKPIL--TNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGT 333 (443)
Q Consensus 278 ~~~~l~~~y~~~~~il--~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~ 333 (443)
.++.|... +...+ +++++.+.+| +++|+||||||||||+++|.+++.+..|.
T Consensus 3 ~i~~l~i~---nf~~~~~~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~ 56 (182)
T 3kta_A 3 YIEKLELK---GFKSYGNKKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAK 56 (182)
T ss_dssp EEEEEEEE---SBGGGCSSCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTG
T ss_pred eEEEEEEe---CeEeecCccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCccc
Confidence 34455543 12356 7889999999 99999999999999999999988887663
No 201
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.62 E-value=9.4e-09 Score=93.29 Aligned_cols=36 Identities=22% Similarity=0.189 Sum_probs=32.3
Q ss_pred HHHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHcc
Q psy208 403 RVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINK 440 (443)
Q Consensus 403 Rl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~ 440 (443)
.+.+|++++.+|+++++| |+++|..+++.+.+.|.+
T Consensus 153 ~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~ 188 (191)
T 1oix_A 153 PTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILT 188 (191)
T ss_dssp CHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHH
Confidence 467899999999999999 999999999999988764
No 202
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=98.58 E-value=8.2e-09 Score=108.42 Aligned_cols=48 Identities=29% Similarity=0.423 Sum_probs=44.8
Q ss_pred ceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcC
Q psy208 291 PILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR 338 (443)
Q Consensus 291 ~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~ 338 (443)
.+++++++.+.+|+.++|+|||||||||||++|+|+++|++|.|++.+
T Consensus 248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied 295 (511)
T 2oap_1 248 GVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIED 295 (511)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEES
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcC
Confidence 478899999999999999999999999999999999999999998754
No 203
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.51 E-value=2.1e-09 Score=109.21 Aligned_cols=118 Identities=16% Similarity=0.135 Sum_probs=71.2
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHHc------------CCCCCCceEEEcCc------------eE---EEEeccCccc
Q psy208 299 GATLESRICIVGDNGAGKTTLLKIIMG------------IISPTAGTRTVHRN------------LK---FGYFSQHHVD 351 (443)
Q Consensus 299 ~i~~Ge~i~iiG~NGsGKSTLlk~l~G------------~~~p~~G~i~~~~~------------~~---ig~~~Q~~~~ 351 (443)
.+.+|.+++|+|+||||||||+++|+| .+.|+.|.+.+.+. .. ..++.+.+.
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pG- 94 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAG- 94 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGG-
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccc-
Confidence 456899999999999999999999999 56788898877531 11 123333332
Q ss_pred ccccchhHHHHHHHhCCCCCHHHHHHHHh-------cCCCChhhhhccCCCCCHHHHHHHHHHHHhccCC--CeEEEeCC
Q psy208 352 QLDMNLRCVQLLEAAFPGKPQEEYRRQLG-------GFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAP--NFLVLDEP 422 (443)
Q Consensus 352 ~l~~~~~~~~~~~~~~~~~~~~~~~~~L~-------~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p--~lLiLDEP 422 (443)
+....+..+ ... ..+...+. .+... .+..+..+||+. +| +++++|||
T Consensus 95 -l~~~~s~~e-------~L~-~~fl~~ir~~d~il~Vvd~~---~d~~i~~v~~~~------------dP~~di~ildee 150 (392)
T 1ni3_A 95 -LTKGASTGV-------GLG-NAFLSHVRAVDAIYQVVRAF---DDAEIIHVEGDV------------DPIRDLSIIVDE 150 (392)
T ss_dssp -GCCCCCSSS-------SSC-HHHHHHHTTCSEEEEEEECC---CTTCSSCCSSSS------------CHHHHHHHHHHH
T ss_pred -cccCCcHHH-------HHH-HHHHHHHHHHHHHHHHHhcc---ccceeeeecccc------------Ccchhhhhchhh
Confidence 111101000 000 01111111 11111 123444566653 88 99999999
Q ss_pred CCCCCHHHHHHHHHHHccc
Q psy208 423 TNHLDIETIEALGKAINKY 441 (443)
Q Consensus 423 Tn~LD~~s~~~l~~~L~~~ 441 (443)
+..+|+..++...+.+...
T Consensus 151 l~~~D~~~~~k~~~~l~~~ 169 (392)
T 1ni3_A 151 LLIKDAEFVEKHLEGLRKI 169 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 9999999998877776543
No 204
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.50 E-value=3.2e-08 Score=90.86 Aligned_cols=121 Identities=22% Similarity=0.295 Sum_probs=65.5
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHHcCCC-------------CCCceEEEcCceEEEEeccCcccccccchhHHHHHH---
Q psy208 301 TLESRICIVGDNGAGKTTLLKIIMGIIS-------------PTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLE--- 364 (443)
Q Consensus 301 ~~Ge~i~iiG~NGsGKSTLlk~l~G~~~-------------p~~G~i~~~~~~~ig~~~Q~~~~~l~~~~~~~~~~~--- 364 (443)
.+|.+++|+||||||||||+++|+|+++ |..|++ ++ +.|.++... .+ ...+.
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~~--~g---~~~~~~~~~-~~------~~~i~~~~ 69 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGEE--DG---KDYYFVTRE-MM------QRDIAAGD 69 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTCC--BT---TTBEECCHH-HH------HHHHHHTC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCccc--CC---ceEEEccHH-HH------HHHHHcCC
Confidence 5799999999999999999999999875 555542 11 112222110 00 00000
Q ss_pred --------HhCCCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHH----HHHHHH-HhccCCCeEEEeCCCCCCCHHHH
Q psy208 365 --------AAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKS----RVAFAR-MCMAAPNFLVLDEPTNHLDIETI 431 (443)
Q Consensus 365 --------~~~~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekq----Rl~lA~-al~~~p~lLiLDEPTn~LD~~s~ 431 (443)
....+.+...+.+.+..-... ..+. .+ .|-+. ++ .++ +++.+|++++|||||+++|.++.
T Consensus 70 ~l~~~~~~~n~~g~~~~~i~~~~~~~~~~--~~~~---~~-~g~~~~~~~~~-~~~~~~l~~p~~~ilde~~~~~d~~~e 142 (198)
T 1lvg_A 70 FIEHAEFSGNLYGTSKEAVRAVQAMNRIC--VLDV---DL-QGVRSIKKTDL-CPIYIFVQPPSLDVLEQRLRLRNTETE 142 (198)
T ss_dssp EEEEEEETTEEEEEEHHHHHHHHHTTCEE--EEEC---CH-HHHHHHTTSSC-CCEEEEEECSCHHHHHHHHHHHTCSCH
T ss_pred CEeeeeecCccCCCCHHHHHHHHHcCCcE--EEEC---CH-HHHHHHHhcCC-CcEEEEEeCCCHHHHHHHHHhcCCCCH
Confidence 000011334455555421100 0000 00 11111 12 455 68889999999999999999888
Q ss_pred HHHHHHHcc
Q psy208 432 EALGKAINK 440 (443)
Q Consensus 432 ~~l~~~L~~ 440 (443)
+.+.+.|..
T Consensus 143 ~~i~~~l~~ 151 (198)
T 1lvg_A 143 ESLAKRLAA 151 (198)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888777654
No 205
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.48 E-value=3.9e-08 Score=89.09 Aligned_cols=26 Identities=38% Similarity=0.576 Sum_probs=24.7
Q ss_pred CCEEEEECCCCCcHHHHHHHHHcCCC
Q psy208 303 ESRICIVGDNGAGKTTLLKIIMGIIS 328 (443)
Q Consensus 303 Ge~i~iiG~NGsGKSTLlk~l~G~~~ 328 (443)
|++++|+||||||||||+++|+|+++
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 57899999999999999999999988
No 206
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.44 E-value=9.2e-08 Score=87.26 Aligned_cols=35 Identities=26% Similarity=0.241 Sum_probs=29.8
Q ss_pred EEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCc
Q psy208 298 LGATLESRICIVGDNGAGKTTLLKIIMGIISPTAG 332 (443)
Q Consensus 298 l~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G 332 (443)
++|.+|++++|+||||||||||+++|++.+.|+.|
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~ 35 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK 35 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE
Confidence 46789999999999999999999999999977655
No 207
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.42 E-value=6.5e-08 Score=87.99 Aligned_cols=35 Identities=26% Similarity=0.220 Sum_probs=30.1
Q ss_pred HHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHcc
Q psy208 404 VAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINK 440 (443)
Q Consensus 404 l~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~ 440 (443)
...|++++.+|+++++| |+++|...++.+.+.|.+
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~ 164 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILT 164 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHH
Confidence 34588889999999999 999999999998887754
No 208
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.34 E-value=3.4e-08 Score=90.52 Aligned_cols=53 Identities=17% Similarity=0.216 Sum_probs=40.2
Q ss_pred eeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceE
Q psy208 280 SEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTR 334 (443)
Q Consensus 280 ~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i 334 (443)
+|+++.++ .....+..++..++|++++|+|+||||||||+++|++.+. ..|.+
T Consensus 3 ~~~~~~~~-~~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~ 55 (200)
T 3uie_A 3 TNIKWHEC-SVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKL 55 (200)
T ss_dssp -------C-CCCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCC
T ss_pred CCCccccc-ccCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCce
Confidence 46666653 4557778888889999999999999999999999999987 67876
No 209
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=98.31 E-value=1.2e-06 Score=88.99 Aligned_cols=77 Identities=17% Similarity=0.168 Sum_probs=59.8
Q ss_pred CHHHHHHHHHHhCCCChhhhh-----------------------------ccCCC-CChHHHH-----------------
Q psy208 114 KAPARASVILAGLGFTPEMQK-----------------------------RATKH-FSGGWRK----------------- 146 (443)
Q Consensus 114 ~~~~rv~~~L~~lgl~~~~~~-----------------------------~~~~~-LSGGqr~----------------- 146 (443)
.++..+...+..++++...+. +++.. ||||||+
T Consensus 240 ~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~L 319 (415)
T 4aby_A 240 PLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANPGEELGPLSDVASGGELSRVMLAVSTVLGADTPSV 319 (415)
T ss_dssp HHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSSSCCCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEE
T ss_pred HHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCCCCcccchhhhcCHhHHHHHHHHHHHHhCCCCCEE
Confidence 456678888999987641110 34444 5999999
Q ss_pred -----------HHHHHHHHHhhhC--CCeEEEEecCHHHHhccCCcEEEE----eCCeeEEE
Q psy208 147 -----------MAIIWLENYLQNW--PTTLLVVSHDRHFLDSVPTDIFHL----HSQRIDTY 191 (443)
Q Consensus 147 -----------~~i~wL~~~L~~~--~~tviiVSHDr~fLd~v~~~i~~l----~~g~i~~~ 191 (443)
.++.||.++|+++ ++|||+||||+++++ +||++++| ++|++...
T Consensus 320 lLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~~-~~d~i~~l~k~~~~G~~~~~ 380 (415)
T 4aby_A 320 VFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAA-RAHHHYKVEKQVEDGRTVSH 380 (415)
T ss_dssp EESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHT-TCSEEEEEEEEEETTEEEEE
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHh-hcCeEEEEEEeccCCceEEE
Confidence 6888999999876 589999999999985 69999999 88887543
No 210
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.28 E-value=4.4e-07 Score=91.27 Aligned_cols=131 Identities=20% Similarity=0.283 Sum_probs=73.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC-----------CCCceEEEcCceEE------EEeccCcccccccchhHHHHHHH--
Q psy208 305 RICIVGDNGAGKTTLLKIIMGIIS-----------PTAGTRTVHRNLKF------GYFSQHHVDQLDMNLRCVQLLEA-- 365 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~~-----------p~~G~i~~~~~~~i------g~~~Q~~~~~l~~~~~~~~~~~~-- 365 (443)
+++|+|+||||||||++.|+|... |+.|.+.+.+ ..+ |++.+.+...........+.+..
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g-~~v~l~DT~G~i~~lp~~lve~f~~tl~~~~~aD 259 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINN-RKIMLVDTVGFIRGIPPQIVDAFFVTLSEAKYSD 259 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETT-EEEEEEECCCBCSSCCGGGHHHHHHHHHGGGGSS
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECC-EEEEEEeCCCchhcCCHHHHHHHHHHHHHHHhCC
Confidence 389999999999999999999876 4556776654 222 22222111000000001111110
Q ss_pred ----hCC-CCCH----H---HHHHHHhcCCCChh---hhhccCCCCCHHHHHHHHHH----HHh-ccCCCeEEEeCCCCC
Q psy208 366 ----AFP-GKPQ----E---EYRRQLGGFGVSGD---LALQFVGSLSGGQKSRVAFA----RMC-MAAPNFLVLDEPTNH 425 (443)
Q Consensus 366 ----~~~-~~~~----~---~~~~~L~~~gl~~~---~~~~~~~~LSgGekqRl~lA----~al-~~~p~lLiLDEPTn~ 425 (443)
.+. .... . .+..++..+++... ....++..+|+|+++++.++ +.+ ..+|++ +|||+
T Consensus 260 ~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~----~~~SA 335 (364)
T 2qtf_A 260 ALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDV----IPISA 335 (364)
T ss_dssp EEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEE----EECBT
T ss_pred EEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcE----EEEEC
Confidence 000 1111 1 13455666554321 11234566888888888776 555 434444 79999
Q ss_pred CCHHHHHHHHHHHcc
Q psy208 426 LDIETIEALGKAINK 440 (443)
Q Consensus 426 LD~~s~~~l~~~L~~ 440 (443)
+|....+.|.+.|.+
T Consensus 336 ~~g~gi~~L~~~I~~ 350 (364)
T 2qtf_A 336 LKRTNLELLRDKIYQ 350 (364)
T ss_dssp TTTBSHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHH
Confidence 999999999888764
No 211
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.28 E-value=9.5e-07 Score=88.40 Aligned_cols=106 Identities=16% Similarity=0.210 Sum_probs=65.3
Q ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCCCceEE-EcCceEEEEeccCcccccccchhHHHHHHHhCCCCCHHHHHHHHhcC
Q psy208 304 SRICIVGDNGAGKTTLLKIIMGIISPTAGTRT-VHRNLKFGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGF 382 (443)
Q Consensus 304 e~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~-~~~~~~ig~~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~ 382 (443)
-+++|+|+||+|||||++.|+|.... .|... ......++.+.+... .+. +++.-
T Consensus 168 ~~v~lvG~~gvGKSTLin~L~~~~~~-~~~~~~~t~~~~~~~~~~~~~-~~~-----------------------l~Dt~ 222 (357)
T 2e87_A 168 PTVVIAGHPNVGKSTLLKALTTAKPE-IASYPFTTRGINVGQFEDGYF-RYQ-----------------------IIDTP 222 (357)
T ss_dssp CEEEEECSTTSSHHHHHHHHCSSCCE-EECCTTCSSCEEEEEEEETTE-EEE-----------------------EEECT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCc-cCCCCCeeeceeEEEEEecCc-eEE-----------------------EEeCC
Confidence 36999999999999999999987521 11100 011122333332210 000 00111
Q ss_pred CCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEe-CCCCCCCHHHHHHHHHHHc
Q psy208 383 GVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLD-EPTNHLDIETIEALGKAIN 439 (443)
Q Consensus 383 gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLD-EPTn~LD~~s~~~l~~~L~ 439 (443)
|+ .+.++..+|+|+++++. +.+...++-++++| +|++++|......+.+.+.
T Consensus 223 G~----~~~~~~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~ 275 (357)
T 2e87_A 223 GL----LDRPISERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVH 275 (357)
T ss_dssp TT----SSSCSTTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHH
T ss_pred Cc----cccchhhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHH
Confidence 21 12456679999988775 55555677789999 9999999988776666554
No 212
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.27 E-value=1.1e-07 Score=90.55 Aligned_cols=35 Identities=29% Similarity=0.338 Sum_probs=33.2
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHH---cCCCCCCceEE
Q psy208 301 TLESRICIVGDNGAGKTTLLKIIM---GIISPTAGTRT 335 (443)
Q Consensus 301 ~~Ge~i~iiG~NGsGKSTLlk~l~---G~~~p~~G~i~ 335 (443)
.+|++++|+|||||||||++++|+ |+..|++|.+.
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~ 62 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIY 62 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCcee
Confidence 689999999999999999999999 99999999876
No 213
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.25 E-value=4.2e-07 Score=83.07 Aligned_cols=38 Identities=32% Similarity=0.299 Sum_probs=24.7
Q ss_pred CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCC
Q psy208 290 KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 290 ~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
...++|+||++.+|.+++|+|++||||||+.+.|++.+
T Consensus 12 ~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 12 DLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp ------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 46899999999999999999999999999999999765
No 214
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.25 E-value=2.9e-07 Score=82.94 Aligned_cols=33 Identities=12% Similarity=0.283 Sum_probs=28.3
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHcCCCC-CCceE
Q psy208 302 LESRICIVGDNGAGKTTLLKIIMGIISP-TAGTR 334 (443)
Q Consensus 302 ~Ge~i~iiG~NGsGKSTLlk~l~G~~~p-~~G~i 334 (443)
+|++++|+||||||||||+++|++.+++ ..|.|
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i 37 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPI 37 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCccEEEee
Confidence 6899999999999999999999998764 34544
No 215
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.22 E-value=4.7e-07 Score=82.77 Aligned_cols=38 Identities=18% Similarity=0.303 Sum_probs=29.4
Q ss_pred eEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcC
Q psy208 297 CLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR 338 (443)
Q Consensus 297 sl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~ 338 (443)
.+...+|++++|+|+||||||||+++|++.+ |.+.+..
T Consensus 23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~ 60 (200)
T 4eun_A 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEA 60 (200)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEG
T ss_pred hhcCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEcc
Confidence 4566789999999999999999999999976 7776643
No 216
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.20 E-value=3.4e-06 Score=78.72 Aligned_cols=37 Identities=19% Similarity=0.289 Sum_probs=28.5
Q ss_pred ceeeee-eEEEeCCCEEEEECCCCCcHHHHHHHH-HcCC
Q psy208 291 PILTNV-CLGATLESRICIVGDNGAGKTTLLKII-MGII 327 (443)
Q Consensus 291 ~il~~v-sl~i~~Ge~i~iiG~NGsGKSTLlk~l-~G~~ 327 (443)
+.|+.+ .--+.+|+.++|+||||||||||+..+ .+..
T Consensus 10 ~~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~ 48 (247)
T 2dr3_A 10 PGVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGL 48 (247)
T ss_dssp TTHHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred hhHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 345555 557899999999999999999996544 4443
No 217
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=98.18 E-value=3e-06 Score=74.31 Aligned_cols=51 Identities=22% Similarity=0.363 Sum_probs=42.1
Q ss_pred hhccCCCCChHHHH--------------------------------HHHHHHHHHhhhC---CCeEEEEecCHHHHhccC
Q psy208 133 QKRATKHFSGGWRK--------------------------------MAIIWLENYLQNW---PTTLLVVSHDRHFLDSVP 177 (443)
Q Consensus 133 ~~~~~~~LSGGqr~--------------------------------~~i~wL~~~L~~~---~~tviiVSHDr~fLd~v~ 177 (443)
.++++.+||||||+ .+..++.+.|+++ +.|||+||||.+ +..+|
T Consensus 51 ~~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~-~~~~~ 129 (148)
T 1f2t_B 51 KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE-LKDAA 129 (148)
T ss_dssp EEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCGG-GGGGC
T ss_pred ccCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChHH-HHHhC
Confidence 46899999999998 4666788877554 579999999995 56799
Q ss_pred CcEEEEe
Q psy208 178 TDIFHLH 184 (443)
Q Consensus 178 ~~i~~l~ 184 (443)
++|+.|+
T Consensus 130 d~ii~l~ 136 (148)
T 1f2t_B 130 DHVIRIS 136 (148)
T ss_dssp SEEEEEE
T ss_pred CEEEEEE
Confidence 9999994
No 218
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=98.13 E-value=5.3e-08 Score=101.87 Aligned_cols=132 Identities=8% Similarity=0.086 Sum_probs=71.2
Q ss_pred eeeEEEeCCCEEEEECCCCCcHHHHHHHHHc--CCCCCCceEEEc---Cce-EEEEeccCccc--ccccch-hHHHHHHH
Q psy208 295 NVCLGATLESRICIVGDNGAGKTTLLKIIMG--IISPTAGTRTVH---RNL-KFGYFSQHHVD--QLDMNL-RCVQLLEA 365 (443)
Q Consensus 295 ~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G--~~~p~~G~i~~~---~~~-~ig~~~Q~~~~--~l~~~~-~~~~~~~~ 365 (443)
.+++++.++..+.|.|++||||||+++.|.. +..++.|++.+. ... .+..+..-+.. ....+. .....+..
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~~el~~~~~lPhl~~~Vvtd~~~a~~~L~~ 238 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYEGIPHLLTEVVTDMKDAANALRW 238 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSSGGGGGTTCTTBSSSCBCSHHHHHHHHHH
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCchhhhhhhccCCcccceeecCHHHHHHHHHH
Confidence 4678888999999999999999999999876 455555665431 110 00000000000 000000 01111111
Q ss_pred hCCCCCHHHHHHHHhcCCCChhh-hh-ccCCCCCHHHHHHH----------HHHHHhccCCC-eEEEeCCCCCCCH
Q psy208 366 AFPGKPQEEYRRQLGGFGVSGDL-AL-QFVGSLSGGQKSRV----------AFARMCMAAPN-FLVLDEPTNHLDI 428 (443)
Q Consensus 366 ~~~~~~~~~~~~~L~~~gl~~~~-~~-~~~~~LSgGekqRl----------~lA~al~~~p~-lLiLDEPTn~LD~ 428 (443)
.. ...+.+ .+++...|+..-. .+ +....+|+||+|+. .+++++...|. ++|+||++..++.
T Consensus 239 ~~-~EmerR-~~ll~~~Gv~~i~~yn~~~~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlvIDE~~~ll~~ 312 (512)
T 2ius_A 239 CV-NEMERR-YKLMSALGVRNLAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFADLMMT 312 (512)
T ss_dssp HH-HHHHHH-HHHHHHTTCSSHHHHHHHHHHHHHTTCCCBCTTC---------CCBCCCCCEEEEEEETHHHHHHH
T ss_pred HH-HHHHHH-HHHHHHcCCccHHHHHHHHHHHhhcCCcccccccccccchhccccccccCCcEEEEEeCHHHHHhh
Confidence 10 001122 3567777764211 11 12245788887652 34556677887 8999999998874
No 219
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.12 E-value=1.7e-06 Score=89.99 Aligned_cols=97 Identities=24% Similarity=0.243 Sum_probs=62.3
Q ss_pred CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCceEEEEeccCcccccccchhHHHHHHHhCCC
Q psy208 290 KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEAAFPG 369 (443)
Q Consensus 290 ~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ig~~~Q~~~~~l~~~~~~~~~~~~~~~~ 369 (443)
...+.++++.+++| +.|+||+|+|||||+++|++.... .+-++.- .. + ..
T Consensus 38 ~~~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~~~-----------~f~~is~--~~-~--------------~~ 87 (476)
T 2ce7_A 38 PSKFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEANV-----------PFFHISG--SD-F--------------VE 87 (476)
T ss_dssp THHHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHHTC-----------CEEEEEG--GG-T--------------TT
T ss_pred hHHHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHcCC-----------CeeeCCH--HH-H--------------HH
Confidence 34677788888877 899999999999999999985311 1111110 00 0 00
Q ss_pred CCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCC----------CCCCCHHHHHHHHHHHc
Q psy208 370 KPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEP----------TNHLDIETIEALGKAIN 439 (443)
Q Consensus 370 ~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEP----------Tn~LD~~s~~~l~~~L~ 439 (443)
. + + =+++++.|..++++....|.+|++||+ +++.|......+.++|.
T Consensus 88 ~-------------~--------~--g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~ 144 (476)
T 2ce7_A 88 L-------------F--------V--GVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLV 144 (476)
T ss_dssp C-------------C--------T--THHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHH
T ss_pred H-------------H--------h--cccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHH
Confidence 0 0 0 026778888999999999999999999 34666665555555543
No 220
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=98.12 E-value=8.2e-07 Score=91.10 Aligned_cols=48 Identities=29% Similarity=0.447 Sum_probs=37.9
Q ss_pred EEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCC
Q psy208 277 LQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTA 331 (443)
Q Consensus 277 l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~ 331 (443)
|+++|+ ++|+ +. . .+++.+|++++|+|||||||||||++|+++..|.+
T Consensus 7 l~~~~~-~~~~-~~---~--~~~~~~~~~~~i~G~nG~GKstll~ai~~~~~~~~ 54 (430)
T 1w1w_A 7 LELSNF-KSYR-GV---T--KVGFGESNFTSIIGPNGSGKSNMMDAISFVLGVRS 54 (430)
T ss_dssp EEEESC-SSCC-SE---E--EEECTTCSEEEEECSTTSSHHHHHHHHHHHTTC--
T ss_pred EEEeCE-EEEC-Cc---e--eEEecCCCEEEEECCCCCCHHHHHHHHHhhhcccc
Confidence 678888 6774 21 1 35567899999999999999999999999988865
No 221
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.11 E-value=1.1e-06 Score=90.76 Aligned_cols=127 Identities=13% Similarity=0.094 Sum_probs=73.3
Q ss_pred CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCceEEEEeccCcccccccchhHHHHHH-----
Q psy208 290 KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLE----- 364 (443)
Q Consensus 290 ~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ig~~~Q~~~~~l~~~~~~~~~~~----- 364 (443)
-+.|+++..-+.+|+.+.|.|++|+|||||+..|++...+..|. .+.|+.-+.... ...........
T Consensus 190 ~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~-------~Vl~~s~E~s~~-~l~~r~~~~~~~~~~~ 261 (454)
T 2r6a_A 190 FTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNE-------NVAIFSLEMSAQ-QLVMRMLCAEGNINAQ 261 (454)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSC-------CEEEEESSSCHH-HHHHHHHHHHHTCCHH
T ss_pred cHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCC-------cEEEEECCCCHH-HHHHHHHHHHcCCCHH
Confidence 35788888789999999999999999999999999876554442 345555432100 00000000000
Q ss_pred H-hCCCCCHHH---HHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhc--cCCCeEEEeCCCCCCC
Q psy208 365 A-AFPGKPQEE---YRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCM--AAPNFLVLDEPTNHLD 427 (443)
Q Consensus 365 ~-~~~~~~~~~---~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~--~~p~lLiLDEPTn~LD 427 (443)
. ........+ +...+..++.. ...-.....+|.++.+. .++.+. .+|+++|+|+|+...+
T Consensus 262 ~l~~g~l~~~~~~~~~~a~~~l~~~-~l~i~d~~~~s~~~i~~--~~~~l~~~~~~~livID~l~~~~~ 327 (454)
T 2r6a_A 262 NLRTGKLTPEDWGKLTMAMGSLSNA-GIYIDDTPSIRVSDIRA--KCRRLKQESGLGMIVIDYLQLIQG 327 (454)
T ss_dssp HHHTSCCCHHHHHHHHHHHHHHHSS-CEEEECCTTCCHHHHHH--HHHHHHTTTCCCEEEEECGGGSCC
T ss_pred HHhcCCCCHHHHHHHHHHHHHHhcC-CEEEECCCCCCHHHHHH--HHHHHHHHcCCCEEEEccHHHhcc
Confidence 0 001122222 22223222211 11122345799999874 445554 6899999999998874
No 222
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.08 E-value=1.8e-06 Score=79.56 Aligned_cols=29 Identities=21% Similarity=0.239 Sum_probs=27.4
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHHcCCCC
Q psy208 301 TLESRICIVGDNGAGKTTLLKIIMGIISP 329 (443)
Q Consensus 301 ~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p 329 (443)
.+|.+++|+||||||||||+++|++.++|
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 57999999999999999999999999876
No 223
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=98.07 E-value=7.6e-07 Score=81.58 Aligned_cols=37 Identities=22% Similarity=0.141 Sum_probs=33.0
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEE
Q psy208 300 ATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTV 336 (443)
Q Consensus 300 i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~ 336 (443)
..+|.+++|+|+||||||||+++|++.+++..|.+.+
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~ 55 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCV 55 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEE
Confidence 5678899999999999999999999999888887654
No 224
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=98.06 E-value=1.6e-06 Score=95.44 Aligned_cols=123 Identities=16% Similarity=0.146 Sum_probs=72.9
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCceEEEEeccCcccccccchhHHHHHHHhCCCCCHHHHHHHH
Q psy208 300 ATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQL 379 (443)
Q Consensus 300 i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ig~~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L 379 (443)
+..|+.++|+|||||||||++.++++...+..|. ...+.++. |...+. ......+........ .
T Consensus 106 l~~~~~vii~gpTGSGKTtllp~ll~~~~~~~~~-----g~~ilvl~--P~r~La--~q~~~~l~~~~~~~v-------~ 169 (773)
T 2xau_A 106 YQNNQIMVFVGETGSGKTTQIPQFVLFDEMPHLE-----NTQVACTQ--PRRVAA--MSVAQRVAEEMDVKL-------G 169 (773)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHHHHHHCGGGG-----TCEEEEEE--SCHHHH--HHHHHHHHHHTTCCB-------T
T ss_pred HhCCCeEEEECCCCCCHHHHHHHHHHHhccccCC-----CceEEecC--chHHHH--HHHHHHHHHHhCCch-------h
Confidence 5678999999999999999999997765444320 11122221 111110 011111111110000 0
Q ss_pred hcCCC----Ch-hhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCC-CCCHHHHHHHHHHH
Q psy208 380 GGFGV----SG-DLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTN-HLDIETIEALGKAI 438 (443)
Q Consensus 380 ~~~gl----~~-~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn-~LD~~s~~~l~~~L 438 (443)
..+|. .. ...+..+..+|+|+.+|..++..++.+++++|+|||.. +||......+...+
T Consensus 170 ~~vG~~i~~~~~~~~~~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l 234 (773)
T 2xau_A 170 EEVGYSIRFENKTSNKTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQV 234 (773)
T ss_dssp TTEEEEETTEEECCTTCSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHH
T ss_pred heecceeccccccCCCCCEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHH
Confidence 00110 00 01234567789999999999999999999999999996 89977665555444
No 225
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=98.06 E-value=3.8e-06 Score=84.41 Aligned_cols=56 Identities=18% Similarity=0.299 Sum_probs=46.9
Q ss_pred hhccCCCCChHHHH--------------------------------HHHHHHHHHhhh---CCCeEEEEecCHHHHhccC
Q psy208 133 QKRATKHFSGGWRK--------------------------------MAIIWLENYLQN---WPTTLLVVSHDRHFLDSVP 177 (443)
Q Consensus 133 ~~~~~~~LSGGqr~--------------------------------~~i~wL~~~L~~---~~~tviiVSHDr~fLd~v~ 177 (443)
+++++.+||||||+ .+..++.+.|++ .+.|||+||||.++ ...|
T Consensus 273 ~~~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~-~~~~ 351 (365)
T 3qf7_A 273 IERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREF-SEAF 351 (365)
T ss_dssp EEEEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHH-HTTC
T ss_pred cCCCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHH-HHhC
Confidence 35789999999998 566677777754 46899999999998 5679
Q ss_pred CcEEEEeCCeeE
Q psy208 178 TDIFHLHSQRID 189 (443)
Q Consensus 178 ~~i~~l~~g~i~ 189 (443)
++|+.|++|++.
T Consensus 352 d~~~~l~~G~i~ 363 (365)
T 3qf7_A 352 DRKLRITGGVVV 363 (365)
T ss_dssp SCEEEEETTEEC
T ss_pred CEEEEEECCEEE
Confidence 999999999885
No 226
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.05 E-value=8.8e-07 Score=82.97 Aligned_cols=37 Identities=24% Similarity=0.222 Sum_probs=31.4
Q ss_pred eEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEc
Q psy208 297 CLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVH 337 (443)
Q Consensus 297 sl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~ 337 (443)
+....+|++++|+|+||||||||+++|+|. .|.|.+.
T Consensus 14 ~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~ 50 (230)
T 2vp4_A 14 YAEGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLL 50 (230)
T ss_dssp BTTTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEE
T ss_pred cCCCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEE
Confidence 445678999999999999999999999997 6766553
No 227
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.03 E-value=5.1e-06 Score=83.05 Aligned_cols=42 Identities=26% Similarity=0.474 Sum_probs=32.8
Q ss_pred ceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHc--CCCCCCceEE
Q psy208 291 PILTNVCLGATLESRICIVGDNGAGKTTLLKIIMG--IISPTAGTRT 335 (443)
Q Consensus 291 ~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G--~~~p~~G~i~ 335 (443)
.+|++++++++ .++|+|++|||||||++.|+| ++++.+|.++
T Consensus 25 ~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT 68 (360)
T 3t34_A 25 SALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVT 68 (360)
T ss_dssp CCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCC
T ss_pred cccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCccc
Confidence 47888888887 899999999999999999999 5677777654
No 228
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.01 E-value=9.5e-07 Score=87.30 Aligned_cols=44 Identities=20% Similarity=0.175 Sum_probs=39.2
Q ss_pred eeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEE
Q psy208 293 LTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTV 336 (443)
Q Consensus 293 l~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~ 336 (443)
+.+++|++.+|++++|+|+||+||||++..|++.+.+..|+|.+
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVll 138 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLI 138 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 36788888999999999999999999999999999988887754
No 229
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.01 E-value=2.2e-06 Score=78.71 Aligned_cols=32 Identities=13% Similarity=0.286 Sum_probs=26.8
Q ss_pred eEEEeCCCEEEEECCCCCcHHHHHHHHHcCCC
Q psy208 297 CLGATLESRICIVGDNGAGKTTLLKIIMGIIS 328 (443)
Q Consensus 297 sl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~ 328 (443)
|+...+|..++|+||||||||||++.|++.++
T Consensus 13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 13 NLYFQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp ---CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred cCCCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 34456899999999999999999999999875
No 230
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=98.01 E-value=7.9e-07 Score=87.85 Aligned_cols=53 Identities=19% Similarity=0.261 Sum_probs=40.0
Q ss_pred eeEEEeCCCCceeeeeeEEEeCCC------EEEEECCCCCcHHHHHHHHHcCCC--CCCceE
Q psy208 281 EVNFEYVPGKPILTNVCLGATLES------RICIVGDNGAGKTTLLKIIMGIIS--PTAGTR 334 (443)
Q Consensus 281 ~l~~~y~~~~~il~~vsl~i~~Ge------~i~iiG~NGsGKSTLlk~l~G~~~--p~~G~i 334 (443)
.+++.|+ +...+++++..+..+. ++||+||||||||||+++|.+++. |++|.+
T Consensus 65 ll~~~~~-~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v 125 (321)
T 3tqc_A 65 LLSFYVT-ARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNV 125 (321)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCE
T ss_pred HHHHhhc-chHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeE
Confidence 3444453 3556777777777666 899999999999999999999987 455543
No 231
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.00 E-value=1.4e-06 Score=82.41 Aligned_cols=57 Identities=19% Similarity=0.165 Sum_probs=47.0
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEc
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVH 337 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~ 337 (443)
..+++++.+.|. ...+++++++.+++| ++|+||||||||||+++|++... .|.+.+.
T Consensus 25 ~~~l~~l~~~~~-~~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~ 81 (254)
T 1ixz_A 25 KEELKEIVEFLK-NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITAS 81 (254)
T ss_dssp HHHHHHHHHHHH-CHHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEE
T ss_pred HHHHHHHHHHHH-CHHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEee
Confidence 355677777774 457899999999999 99999999999999999999875 5666553
No 232
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=97.98 E-value=1.1e-06 Score=88.27 Aligned_cols=52 Identities=21% Similarity=0.139 Sum_probs=48.0
Q ss_pred eEEEeeeEEEeCCCCceee--------------eeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCC
Q psy208 276 ILQLSEVNFEYVPGKPILT--------------NVCLGATLESRICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~--------------~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
-+.++||++.|+..+..++ |+++.|.+|++++|+||+|+|||||++.|++.+
T Consensus 133 ri~Fe~ltp~yP~er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 133 KILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp SCCTTTSCEESCCSBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred CceeccccccCCCCccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 4789999999987778899 899999999999999999999999999998865
No 233
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.97 E-value=1.6e-06 Score=83.32 Aligned_cols=56 Identities=20% Similarity=0.180 Sum_probs=46.5
Q ss_pred EEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEc
Q psy208 277 LQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVH 337 (443)
Q Consensus 277 l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~ 337 (443)
.+++++.+.|. ...+++++++.+.+| ++|+||||||||||+++|++... .|.+.+.
T Consensus 50 ~~l~~l~~~~~-~~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~ 105 (278)
T 1iy2_A 50 EELKEIVEFLK-NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITAS 105 (278)
T ss_dssp HHHHHHHHHHH-CHHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEE
T ss_pred HHHHHHHHHHH-CHHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEec
Confidence 45677777774 457899999999999 99999999999999999999875 5666553
No 234
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.94 E-value=2.4e-05 Score=78.15 Aligned_cols=94 Identities=23% Similarity=0.294 Sum_probs=55.9
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCceEEEEeccCcccccccchhHHHHHHHhCCCCCHHHHHHH
Q psy208 299 GATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQ 378 (443)
Q Consensus 299 ~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ig~~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (443)
-+.+|+++.|.||||||||||+..++.......| .+.|+.-+.. +.. . .
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~--------~vlyi~~E~~--~~~--~-------------------~ 105 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGG--------IAAFIDAEHA--LDP--E-------------------Y 105 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTC--------CEEEEESSCC--CCH--H-------------------H
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCC--------eEEEEECCCC--cCH--H-------------------H
Confidence 4789999999999999999998888765443333 3455554421 111 0 0
Q ss_pred HhcCCCChhhhhccCCCCCHHHHHHHHHHHHhcc--CCCeEEEeCCCCCC
Q psy208 379 LGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMA--APNFLVLDEPTNHL 426 (443)
Q Consensus 379 L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~--~p~lLiLDEPTn~L 426 (443)
...+|+..+... .....+.. +-+.++++++. +|+++|+|+|++.+
T Consensus 106 a~~lG~~~~~l~-i~~~~~~e--~~l~~~~~l~~~~~~~lIVIDsl~~l~ 152 (349)
T 2zr9_A 106 AKKLGVDTDSLL-VSQPDTGE--QALEIADMLVRSGALDIIVIDSVAALV 152 (349)
T ss_dssp HHHTTCCGGGCE-EECCSSHH--HHHHHHHHHHTTTCCSEEEEECGGGCC
T ss_pred HHHcCCCHHHeE-EecCCCHH--HHHHHHHHHHhcCCCCEEEEcChHhhc
Confidence 122333211110 00112332 33456776654 49999999999998
No 235
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.93 E-value=4.4e-05 Score=75.95 Aligned_cols=106 Identities=16% Similarity=0.165 Sum_probs=60.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCceEEEEeccCcccccccchhHHHHHHHhCCCCCHHHHHHHHhcCCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGV 384 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ig~~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl 384 (443)
.+.|+||+|+|||||++.+++...+..+ ..+.++.-... . +.. .-+..++..++.
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~-------~~~~~i~~~~~--~----~~~------------~~~~~l~~~l~~ 100 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDKTT-------ARFVYINGFIY--R----NFT------------AIIGEIARSLNI 100 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSCC-------CEEEEEETTTC--C----SHH------------HHHHHHHHHTTC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhhcC-------eeEEEEeCccC--C----CHH------------HHHHHHHHHhCc
Confidence 7999999999999999999998776531 12333332110 0 111 111222233332
Q ss_pred ChhhhhccCCCCCHHHHHHHHHHHH-hccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 385 SGDLALQFVGSLSGGQKSRVAFARM-CMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 385 ~~~~~~~~~~~LSgGekqRl~lA~a-l~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
. .+....+.++........+ -..+|.+|+|||+... |......|...+.++
T Consensus 101 ~-----~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l-~~~~~~~L~~~~~~~ 152 (389)
T 1fnn_A 101 P-----FPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNL-APDILSTFIRLGQEA 152 (389)
T ss_dssp C-----CCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGS-CHHHHHHHHHHTTCH
T ss_pred c-----CCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECcccc-chHHHHHHHHHHHhC
Confidence 1 1112233333322211111 1345889999999876 999999988887653
No 236
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.92 E-value=3.9e-06 Score=74.23 Aligned_cols=28 Identities=29% Similarity=0.407 Sum_probs=25.1
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHcCCCC
Q psy208 302 LESRICIVGDNGAGKTTLLKIIMGIISP 329 (443)
Q Consensus 302 ~Ge~i~iiG~NGsGKSTLlk~l~G~~~p 329 (443)
.|.+++|+|+||||||||+++|++.+.+
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~ 30 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM 30 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTC
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4688999999999999999999997654
No 237
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.90 E-value=2.4e-05 Score=80.19 Aligned_cols=109 Identities=12% Similarity=0.072 Sum_probs=64.6
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCceEEEEeccCcccccccchhHHHHHHHhCCCCCHHHHHHHHhc
Q psy208 302 LESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGG 381 (443)
Q Consensus 302 ~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ig~~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 381 (443)
++.+++++|+|||||||++..|++.+.+..+.|.+ +.-+.. . ....+ ++..+-..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVll--------v~~D~~---r--~~a~e------------qL~~~~~~ 150 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGL--------VAADVY---R--PAAYD------------QLLQLGNQ 150 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEE--------EEECCS---C--HHHHH------------HHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEE--------EecCcc---c--hhHHH------------HHHHHHHh
Confidence 46789999999999999999999988876665433 332221 0 01111 12222233
Q ss_pred CCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCC-CC--CCHHHHHHHHHHH
Q psy208 382 FGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPT-NH--LDIETIEALGKAI 438 (443)
Q Consensus 382 ~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPT-n~--LD~~s~~~l~~~L 438 (443)
.+++-. ......+.-.-.+-+++.+...+++++|+|+|. .+ .|......+...+
T Consensus 151 ~gv~~~---~~~~~~dp~~i~~~al~~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~ 207 (433)
T 3kl4_A 151 IGVQVY---GEPNNQNPIEIAKKGVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMY 207 (433)
T ss_dssp TTCCEE---CCTTCSCHHHHHHHHHHHTTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHH
T ss_pred cCCcee---eccccCCHHHHHHHHHHHHHhcCCCEEEEECCCCccccCCHHHHHHHHHHH
Confidence 343210 000111222223345666667799999999998 56 7887777776644
No 238
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=97.90 E-value=1.3e-05 Score=72.09 Aligned_cols=70 Identities=11% Similarity=0.164 Sum_probs=54.7
Q ss_pred hhccCCCCChHHHH------------------------------HHHHHHHHHhhhC--CCeEEEEecCHHHHhccCCcE
Q psy208 133 QKRATKHFSGGWRK------------------------------MAIIWLENYLQNW--PTTLLVVSHDRHFLDSVPTDI 180 (443)
Q Consensus 133 ~~~~~~~LSGGqr~------------------------------~~i~wL~~~L~~~--~~tviiVSHDr~fLd~v~~~i 180 (443)
..+++..||||||+ .+..++.++|+++ ++++|+|||+...+ ..|++|
T Consensus 58 ~~~~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith~~~~~-~~ad~i 136 (173)
T 3kta_B 58 DVKRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITLRDVMM-ANADKI 136 (173)
T ss_dssp SCCCGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHH-TTCSEE
T ss_pred cccccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEecHHHH-HhCCEE
Confidence 35678999999998 4666777777543 46899999998765 689999
Q ss_pred EEE--eCCeeEEEcCChhHHHHHHH
Q psy208 181 FHL--HSQRIDTYRGNYEAFDKIKT 203 (443)
Q Consensus 181 ~~l--~~g~i~~~~G~y~~y~~~~~ 203 (443)
+.+ ++|...++..+++.+.+..+
T Consensus 137 ~~v~~~~g~s~~~~~~~~~~~~~~~ 161 (173)
T 3kta_B 137 IGVSMRDGVSKVVSLSLEKAMKILE 161 (173)
T ss_dssp EEEEEETTEEEEEECCHHHHHHHHH
T ss_pred EEEEecCCEEEEEEEEcHHHHHHHH
Confidence 865 57888888899888765544
No 239
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.88 E-value=4.2e-06 Score=74.35 Aligned_cols=33 Identities=12% Similarity=0.203 Sum_probs=27.8
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEc
Q psy208 301 TLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVH 337 (443)
Q Consensus 301 ~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~ 337 (443)
.+|++++|+|+||||||||+++|++.+ |.+.+.
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~ 38 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLD 38 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEE
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEe
Confidence 468899999999999999999999865 555554
No 240
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.87 E-value=2.8e-07 Score=90.21 Aligned_cols=26 Identities=38% Similarity=0.522 Sum_probs=23.2
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHcCC
Q psy208 302 LESRICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 302 ~Ge~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
++.+++|+|+||||||||++.|+|..
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~ 32 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQK 32 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCS
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCC
Confidence 34489999999999999999999974
No 241
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.85 E-value=2.8e-06 Score=89.91 Aligned_cols=37 Identities=24% Similarity=0.320 Sum_probs=33.9
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCc-eEE
Q psy208 299 GATLESRICIVGDNGAGKTTLLKIIMGIISPTAG-TRT 335 (443)
Q Consensus 299 ~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G-~i~ 335 (443)
.+.+|++++|+|+||||||||+++|+|.+.|++| .+.
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~ 402 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVT 402 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEE
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEE
Confidence 5789999999999999999999999999999887 564
No 242
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=97.84 E-value=2.2e-05 Score=77.94 Aligned_cols=105 Identities=18% Similarity=0.090 Sum_probs=67.0
Q ss_pred eeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCceEEEEeccCcccccccchhHHHHHHHhCCCCC
Q psy208 292 ILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEAAFPGKP 371 (443)
Q Consensus 292 il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ig~~~Q~~~~~l~~~~~~~~~~~~~~~~~~ 371 (443)
-|+.+.--+.+|+.+.|.|++|+|||||+..++..... .| ..+.|++-+. +..+..
T Consensus 35 ~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~-~g-------~~Vl~fSlEm--------s~~ql~-------- 90 (338)
T 4a1f_A 35 QLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALN-DD-------RGVAVFSLEM--------SAEQLA-------- 90 (338)
T ss_dssp HHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHH-TT-------CEEEEEESSS--------CHHHHH--------
T ss_pred HHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-cC-------CeEEEEeCCC--------CHHHHH--------
Confidence 44444446889999999999999999999888764332 12 2456655331 111110
Q ss_pred HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCC
Q psy208 372 QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNH 425 (443)
Q Consensus 372 ~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~ 425 (443)
.++..... ++...... -+.||.++.+|+..|...+.+++++|.|+|+..
T Consensus 91 -~Rlls~~~--~v~~~~l~--~g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~s 139 (338)
T 4a1f_A 91 -LRALSDLT--SINMHDLE--SGRLDDDQWENLAKCFDHLSQKKLFFYDKSYVR 139 (338)
T ss_dssp -HHHHHHHH--CCCHHHHH--HTCCCHHHHHHHHHHHHHHHHSCEEEECCTTCC
T ss_pred -HHHHHHhh--CCCHHHHh--cCCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCc
Confidence 01111112 22211111 147999999999999999999999999998644
No 243
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.83 E-value=7.2e-06 Score=75.00 Aligned_cols=31 Identities=29% Similarity=0.235 Sum_probs=27.7
Q ss_pred EEEeCCCEEEEECCCCCcHHHHHHHHHcCCC
Q psy208 298 LGATLESRICIVGDNGAGKTTLLKIIMGIIS 328 (443)
Q Consensus 298 l~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~ 328 (443)
-++.+|.+++|+|++|||||||+++|++.++
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~ 46 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTLAKNLQKHLP 46 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHHHHHHHTTST
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3567889999999999999999999999764
No 244
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.83 E-value=8.9e-06 Score=71.14 Aligned_cols=30 Identities=30% Similarity=0.507 Sum_probs=24.3
Q ss_pred eeeeEEEeCCCEEEEECCCCCcHHHHHHHHH
Q psy208 294 TNVCLGATLESRICIVGDNGAGKTTLLKIIM 324 (443)
Q Consensus 294 ~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~ 324 (443)
.+.++++.+| ..+|+|||||||||++.+|.
T Consensus 15 ~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred cceEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence 3445555554 89999999999999999986
No 245
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.78 E-value=2.4e-06 Score=85.03 Aligned_cols=58 Identities=17% Similarity=0.202 Sum_probs=46.0
Q ss_pred EEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEE
Q psy208 278 QLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTV 336 (443)
Q Consensus 278 ~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~ 336 (443)
+.+++.+.|+ ...+++++++.+.+|.+++|+|+||+|||||++.|++.+.+..|.+.+
T Consensus 32 e~~~~~~~~~-~~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v 89 (341)
T 2p67_A 32 ESRHPRHQAL-STQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAV 89 (341)
T ss_dssp HCCCHHHHHH-HHHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred hcCCchhhhH-HHHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEE
Confidence 3344444553 346888889999999999999999999999999999988777776543
No 246
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=97.76 E-value=3.7e-06 Score=83.53 Aligned_cols=52 Identities=19% Similarity=0.272 Sum_probs=39.6
Q ss_pred hhhccCCCCChHHHH--------------------------------HHHHHHHHHhhh---CCCeEEEEecCHHHHhcc
Q psy208 132 MQKRATKHFSGGWRK--------------------------------MAIIWLENYLQN---WPTTLLVVSHDRHFLDSV 176 (443)
Q Consensus 132 ~~~~~~~~LSGGqr~--------------------------------~~i~wL~~~L~~---~~~tviiVSHDr~fLd~v 176 (443)
..++++.+||||||+ ..+.+|.++|++ .+.|||+||||.++ ..+
T Consensus 241 ~~~~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~~-~~~ 319 (339)
T 3qkt_A 241 GKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEEL-KDA 319 (339)
T ss_dssp TEEECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGGG-GGG
T ss_pred cCcCChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHHH-HHh
Confidence 346889999999986 455556665543 34699999999775 578
Q ss_pred CCcEEEEe
Q psy208 177 PTDIFHLH 184 (443)
Q Consensus 177 ~~~i~~l~ 184 (443)
|++|+.|+
T Consensus 320 ~d~~~~l~ 327 (339)
T 3qkt_A 320 ADHVIRIS 327 (339)
T ss_dssp CSEEEEEE
T ss_pred CCEEEEEE
Confidence 99999986
No 247
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.71 E-value=4.2e-06 Score=77.42 Aligned_cols=34 Identities=32% Similarity=0.349 Sum_probs=28.7
Q ss_pred CCEEEEECCCCCcHHHHHHHHHcCC---CCCCceEEE
Q psy208 303 ESRICIVGDNGAGKTTLLKIIMGII---SPTAGTRTV 336 (443)
Q Consensus 303 Ge~i~iiG~NGsGKSTLlk~l~G~~---~p~~G~i~~ 336 (443)
+.+++|+|++||||||+.++|++.+ .+++|.+..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~ 41 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYR 41 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceee
Confidence 5689999999999999999999866 667777643
No 248
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.66 E-value=1.7e-05 Score=74.31 Aligned_cols=43 Identities=21% Similarity=0.176 Sum_probs=30.6
Q ss_pred eeeeeeEEEe---CCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEE
Q psy208 292 ILTNVCLGAT---LESRICIVGDNGAGKTTLLKIIMGIISPTAGTRT 335 (443)
Q Consensus 292 il~~vsl~i~---~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~ 335 (443)
-|.++||.+. +|.+++|.|++||||||+++.|+..+.+ .+.+.
T Consensus 12 ~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~ 57 (229)
T 4eaq_A 12 DLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVI 57 (229)
T ss_dssp --------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEE
T ss_pred CccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCce
Confidence 3455555555 8999999999999999999999999887 55553
No 249
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.64 E-value=1.6e-05 Score=72.05 Aligned_cols=42 Identities=26% Similarity=0.385 Sum_probs=31.7
Q ss_pred EEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHc
Q psy208 283 NFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMG 325 (443)
Q Consensus 283 ~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G 325 (443)
+++|++-..+++++|+..+++ +++|+|++|+|||||++.+.+
T Consensus 6 ~~~~~~~~~~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 6 DWIYSGFSSVLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp -------CHHHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhc
Confidence 455665567899999988776 689999999999999999987
No 250
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.63 E-value=8.6e-05 Score=72.88 Aligned_cols=108 Identities=10% Similarity=0.047 Sum_probs=65.5
Q ss_pred ceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCceEEEEeccCcccccccchhHHHHHHHhCCCC
Q psy208 291 PILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEAAFPGK 370 (443)
Q Consensus 291 ~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ig~~~Q~~~~~l~~~~~~~~~~~~~~~~~ 370 (443)
+-|+.+.--+.+|+.+.|.|+.|+|||||+..++...-- .| ..+.|+.-+. ... ....
T Consensus 56 ~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~-~g-------~~vl~~slE~----s~~-~l~~--------- 113 (315)
T 3bh0_A 56 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSD-ND-------DVVNLHSLEM----GKK-ENIK--------- 113 (315)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHT-TT-------CEEEEEESSS----CHH-HHHH---------
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-cC-------CeEEEEECCC----CHH-HHHH---------
Confidence 345555555889999999999999999998877643211 12 2456665331 100 0111
Q ss_pred CHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCC
Q psy208 371 PQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNH 425 (443)
Q Consensus 371 ~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~ 425 (443)
++.... .++........-..||.++++|+..|...+.++++++.|+|+..
T Consensus 114 ---R~~~~~--~~i~~~~l~~~~~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~ 163 (315)
T 3bh0_A 114 ---RLIVTA--GSINAQKIKAARRDFASEDWGKLSMAIGEISNSNINIFDKAGQS 163 (315)
T ss_dssp ---HHHHHH--TTCCHHHHHSCHHHHCSSCHHHHHHHHHHHHTSCEEEECCSCCB
T ss_pred ---HHHHHH--cCCCHHHHhcCCCCCCHHHHHHHHHHHHHHhCCCEEEECCCCCC
Confidence 111111 12221111111012999999999999998889999999998643
No 251
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.62 E-value=1.5e-05 Score=79.62 Aligned_cols=35 Identities=26% Similarity=0.442 Sum_probs=29.9
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEE
Q psy208 302 LESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTV 336 (443)
Q Consensus 302 ~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~ 336 (443)
++.+++|+|++|||||||++.|+|.+.|..|.|.+
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V 107 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSV 107 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEE
Confidence 34579999999999999999999988877776644
No 252
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.59 E-value=0.00018 Score=67.22 Aligned_cols=29 Identities=41% Similarity=0.583 Sum_probs=24.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCCCce
Q psy208 305 RICIVGDNGAGKTTLLKIIMGIISPTAGT 333 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~~p~~G~ 333 (443)
+++|+|++|+|||||++.|+|...+.++.
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~~~~~ 59 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVFHSGT 59 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCSCC--
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcCccCC
Confidence 58999999999999999999988777664
No 253
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.58 E-value=2e-05 Score=70.28 Aligned_cols=31 Identities=26% Similarity=0.322 Sum_probs=26.9
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHHcCCCCCCc
Q psy208 301 TLESRICIVGDNGAGKTTLLKIIMGIISPTAG 332 (443)
Q Consensus 301 ~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G 332 (443)
.+|.+++|+|++||||||++++|++.+++ .|
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g 33 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-HG 33 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh-CC
Confidence 36889999999999999999999998765 45
No 254
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.57 E-value=7.9e-05 Score=73.28 Aligned_cols=83 Identities=14% Similarity=0.198 Sum_probs=50.3
Q ss_pred CHHHHHHHHHHh-CCCC---hhhhhccCCCCChHHHH------------------------------HHHHHHHHHhhhC
Q psy208 114 KAPARASVILAG-LGFT---PEMQKRATKHFSGGWRK------------------------------MAIIWLENYLQNW 159 (443)
Q Consensus 114 ~~~~rv~~~L~~-lgl~---~~~~~~~~~~LSGGqr~------------------------------~~i~wL~~~L~~~ 159 (443)
++..++..+|.. +++. +...++++.+||||||+ ....+|.++|+++
T Consensus 190 ~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~ 269 (322)
T 1e69_A 190 NIVSEAKSILDAGFEISIRKPGRRDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKEN 269 (322)
T ss_dssp --------------CCEEECTTSCCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHH
T ss_pred EeeccccccccCCeEEEEecCccccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh
Confidence 344445555553 3321 12246788999999998 5666777777654
Q ss_pred --CCeEEEEecCHHHHhccCCcE--EEEeCCeeEEEcCChhH
Q psy208 160 --PTTLLVVSHDRHFLDSVPTDI--FHLHSQRIDTYRGNYEA 197 (443)
Q Consensus 160 --~~tviiVSHDr~fLd~v~~~i--~~l~~g~i~~~~G~y~~ 197 (443)
+.|||+||||.+ +..+||++ +.+++|...+...+.++
T Consensus 270 ~~~~~vi~~tH~~~-~~~~~d~~~~v~~~~g~s~~~~~~~~~ 310 (322)
T 1e69_A 270 SKHTQFIVITHNKI-VMEAADLLHGVTMVNGVSAIVPVEVEK 310 (322)
T ss_dssp TTTSEEEEECCCTT-GGGGCSEEEEEEESSSCEEEEECCC--
T ss_pred cCCCeEEEEECCHH-HHhhCceEEEEEEeCCEEEEEEEEcch
Confidence 569999999975 45689987 88888887776666544
No 255
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=97.55 E-value=1.5e-05 Score=83.62 Aligned_cols=35 Identities=20% Similarity=0.277 Sum_probs=31.6
Q ss_pred ceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcC
Q psy208 291 PILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGI 326 (443)
Q Consensus 291 ~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~ 326 (443)
..+++++|++.+| +.+|+|+|||||||||.+|..+
T Consensus 49 ~~~~~~~l~f~~g-~n~i~G~NGaGKS~lleAl~~l 83 (517)
T 4ad8_A 49 ATITQLELELGGG-FCAFTGETGAGKSIIVDALGLL 83 (517)
T ss_dssp TTBSCEEEECCCS-EEEEEESHHHHHHHHTHHHHHH
T ss_pred cceeeEEEecCCC-eEEEEcCCCCCHHHHHHHHHHH
Confidence 3678899999999 9999999999999999999665
No 256
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=97.52 E-value=4.6e-05 Score=69.98 Aligned_cols=30 Identities=30% Similarity=0.521 Sum_probs=23.9
Q ss_pred eeeeEEEeCCCEEEEECCCCCcHHHHHHHHH
Q psy208 294 TNVCLGATLESRICIVGDNGAGKTTLLKIIM 324 (443)
Q Consensus 294 ~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~ 324 (443)
.+.++.+.+ ...+|+|||||||||++.+|.
T Consensus 15 ~~~~i~f~~-~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 15 SDTVVEFKE-GINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SSEEEECCS-EEEEEECCTTSSHHHHHHHHH
T ss_pred cceEEEeCC-CeEEEEcCCCCCHHHHHHHHH
Confidence 344555555 489999999999999999884
No 257
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.46 E-value=0.00021 Score=68.81 Aligned_cols=75 Identities=24% Similarity=0.319 Sum_probs=50.3
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCceEEEEeccCcccccccchhHHHHHHHhCCCCCHHHHHHHHhc
Q psy208 302 LESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGG 381 (443)
Q Consensus 302 ~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ig~~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 381 (443)
++..+.|.||+|+|||||++.|++.... .+-++.- . .+.
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~~~-----------~~~~i~~--~-~l~--------------------------- 91 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATECSA-----------TFLNISA--A-SLT--------------------------- 91 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTTC-----------EEEEEES--T-TTS---------------------------
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHhCC-----------CeEEeeH--H-HHh---------------------------
Confidence 4567999999999999999999985421 1111110 0 000
Q ss_pred CCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCC
Q psy208 382 FGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD 427 (443)
Q Consensus 382 ~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD 427 (443)
... .-+++++.+..+..+...+|.+|++||+.+-++
T Consensus 92 --------~~~--~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~ 127 (297)
T 3b9p_A 92 --------SKY--VGDGEKLVRALFAVARHMQPSIIFIDEVDSLLS 127 (297)
T ss_dssp --------SSS--CSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSB
T ss_pred --------hcc--cchHHHHHHHHHHHHHHcCCcEEEeccHHHhcc
Confidence 000 124577778888888888999999999977654
No 258
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.45 E-value=5.8e-05 Score=68.73 Aligned_cols=22 Identities=27% Similarity=0.552 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGI 326 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~ 326 (443)
+++|+|+|||||||+.++|+++
T Consensus 4 ~i~l~G~~GsGKST~~~~La~l 25 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDL 25 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
Confidence 6899999999999999999983
No 259
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.43 E-value=2e-05 Score=83.38 Aligned_cols=58 Identities=19% Similarity=0.227 Sum_probs=47.0
Q ss_pred EEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEE
Q psy208 277 LQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTV 336 (443)
Q Consensus 277 l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~ 336 (443)
+-++++.+.|. ...++.++++++ +|..++|+||||+|||||+++|++.+.+..|.+..
T Consensus 84 ~G~~~vk~~i~-~~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~ 141 (543)
T 3m6a_A 84 HGLEKVKERIL-EYLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISL 141 (543)
T ss_dssp SSCHHHHHHHH-HHHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECC
T ss_pred ccHHHHHHHHH-HHHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEe
Confidence 44566666663 345778888888 89999999999999999999999999887777654
No 260
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.41 E-value=5.9e-05 Score=68.49 Aligned_cols=21 Identities=33% Similarity=0.627 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q psy208 305 RICIVGDNGAGKTTLLKIIMG 325 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G 325 (443)
+++|+|+|||||||+.++|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 699999999999999999999
No 261
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.39 E-value=0.00038 Score=69.09 Aligned_cols=28 Identities=21% Similarity=0.169 Sum_probs=25.5
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHHcC
Q psy208 299 GATLESRICIVGDNGAGKTTLLKIIMGI 326 (443)
Q Consensus 299 ~i~~Ge~i~iiG~NGsGKSTLlk~l~G~ 326 (443)
-|++|+++.|.||+|||||||+..++..
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4779999999999999999999988874
No 262
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.38 E-value=0.00015 Score=65.01 Aligned_cols=34 Identities=29% Similarity=0.461 Sum_probs=20.9
Q ss_pred ceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHc
Q psy208 291 PILTNVCLGATLESRICIVGDNGAGKTTLLKIIMG 325 (443)
Q Consensus 291 ~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G 325 (443)
.+++++++..+.. +++|+|++|+|||||++.+.+
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhc
Confidence 3778888887776 899999999999999999998
No 263
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.36 E-value=8.3e-05 Score=73.54 Aligned_cols=31 Identities=26% Similarity=0.427 Sum_probs=26.2
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHHcCCCCCC
Q psy208 301 TLESRICIVGDNGAGKTTLLKIIMGIISPTA 331 (443)
Q Consensus 301 ~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~ 331 (443)
..+..+.|.||+|+|||||++.+++...+..
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~ 73 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKF 73 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 3567899999999999999999998765543
No 264
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.36 E-value=8.6e-05 Score=65.63 Aligned_cols=26 Identities=31% Similarity=0.493 Sum_probs=23.4
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHcCC
Q psy208 302 LESRICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 302 ~Ge~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+|.+++|+|++|+|||||++.|+|..
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 57889999999999999999999875
No 265
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.36 E-value=3.1e-05 Score=71.14 Aligned_cols=39 Identities=18% Similarity=0.153 Sum_probs=33.1
Q ss_pred EEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCc--eEEE
Q psy208 298 LGATLESRICIVGDNGAGKTTLLKIIMGIISPTAG--TRTV 336 (443)
Q Consensus 298 l~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G--~i~~ 336 (443)
+.+.+|.+++|+|++||||||+.+.|++.+.|..| .+.+
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~ 60 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRL 60 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEE
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEE
Confidence 44678899999999999999999999998887777 5544
No 266
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.35 E-value=5.7e-05 Score=77.28 Aligned_cols=52 Identities=15% Similarity=0.033 Sum_probs=42.1
Q ss_pred eeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEE
Q psy208 280 SEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTV 336 (443)
Q Consensus 280 ~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~ 336 (443)
+++++.|++. . ++++|+ +|.+++|+|+|||||||++..|++.+.+..|.|.+
T Consensus 80 ~~L~~~~~~~-~--~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vll 131 (425)
T 2ffh_A 80 EALKEALGGE-A--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLL 131 (425)
T ss_dssp HHHHHHTTSS-C--CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred HHHHHHhCCC-c--ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 4566667432 2 677887 88999999999999999999999999988777654
No 267
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.35 E-value=9e-05 Score=66.52 Aligned_cols=32 Identities=25% Similarity=0.345 Sum_probs=26.5
Q ss_pred eeeEEEeCCCEEEEECCCCCcHHHHHHHHHcC
Q psy208 295 NVCLGATLESRICIVGDNGAGKTTLLKIIMGI 326 (443)
Q Consensus 295 ~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~ 326 (443)
++|+...+|.+++|+|+.||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57888889999999999999999999999875
No 268
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.34 E-value=1.9e-05 Score=79.18 Aligned_cols=50 Identities=16% Similarity=0.213 Sum_probs=36.8
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCc
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAG 332 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G 332 (443)
.+.+.|++..|+ .+.++++++|.| +|+|+||+|||||++.|.|...+..|
T Consensus 17 ~v~~~~l~~~~~-~k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~~~ 66 (361)
T 2qag_A 17 YVGFANLPNQVH-RKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPER 66 (361)
T ss_dssp ----CCHHHHHH-THHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC----
T ss_pred eEEeccchHHhC-CeeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCCCC
Confidence 478899998885 567889999875 99999999999999999887655444
No 269
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.33 E-value=4.6e-05 Score=68.30 Aligned_cols=36 Identities=17% Similarity=0.191 Sum_probs=30.7
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceE
Q psy208 299 GATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTR 334 (443)
Q Consensus 299 ~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i 334 (443)
...+|.+++|+|++||||||+.+.|++.+.+..|.+
T Consensus 9 ~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~ 44 (186)
T 2yvu_A 9 CIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRV 44 (186)
T ss_dssp CCSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 345788999999999999999999999887766655
No 270
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=97.26 E-value=0.00018 Score=62.88 Aligned_cols=24 Identities=25% Similarity=0.558 Sum_probs=21.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGIIS 328 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~~ 328 (443)
+++|+|++|+|||||++.++|...
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~~ 28 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGENV 28 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCe
Confidence 689999999999999999999653
No 271
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.24 E-value=4.2e-05 Score=74.64 Aligned_cols=54 Identities=19% Similarity=0.103 Sum_probs=41.3
Q ss_pred EeeeEEEeCCCCceeee-eeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEE
Q psy208 279 LSEVNFEYVPGKPILTN-VCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTV 336 (443)
Q Consensus 279 ~~~l~~~y~~~~~il~~-vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~ 336 (443)
.+++...|++. . .+ ++|+.. |.+++++|+||+||||++..|++.+.+..|.+.+
T Consensus 77 ~~~l~~~~~~~-~--~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l 131 (297)
T 1j8m_F 77 YDELSNLFGGD-K--EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGL 131 (297)
T ss_dssp HHHHHHHTTCS-C--CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHhccc-c--ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 34555556432 1 45 777766 8999999999999999999999998877666543
No 272
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=97.23 E-value=0.00015 Score=73.48 Aligned_cols=38 Identities=26% Similarity=0.383 Sum_probs=30.4
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHHcC-----------CCCCCceEEE
Q psy208 299 GATLESRICIVGDNGAGKTTLLKIIMGI-----------ISPTAGTRTV 336 (443)
Q Consensus 299 ~i~~Ge~i~iiG~NGsGKSTLlk~l~G~-----------~~p~~G~i~~ 336 (443)
.+..|.+++|+|+||+|||||++.|+|. +.|..|.+.+
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v 66 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPV 66 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEEC
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEE
Confidence 3457788999999999999999999998 5666777654
No 273
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.22 E-value=9.9e-05 Score=77.08 Aligned_cols=56 Identities=20% Similarity=0.169 Sum_probs=44.3
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEE
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTV 336 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~ 336 (443)
..+++++...|. ...+++++++.+++| +.|+||||+|||||+++|++... .+.+.+
T Consensus 40 k~~l~~lv~~l~-~~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i 95 (499)
T 2dhr_A 40 KEELKEIVEFLK-NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITA 95 (499)
T ss_dssp HHHHHHHHHHHH-CGGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEE
T ss_pred HHHHHHHHHHhh-chhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEE
Confidence 345566665563 456899999999999 99999999999999999999864 455544
No 274
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=97.21 E-value=0.00016 Score=64.41 Aligned_cols=25 Identities=44% Similarity=0.736 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGIISP 329 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~~p 329 (443)
+++|+|++|+|||||++.++|...+
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~~~ 28 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTKKS 28 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC---
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCc
Confidence 6899999999999999999996433
No 275
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.21 E-value=0.00013 Score=66.63 Aligned_cols=30 Identities=23% Similarity=0.408 Sum_probs=26.0
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHHcCCC
Q psy208 299 GATLESRICIVGDNGAGKTTLLKIIMGIIS 328 (443)
Q Consensus 299 ~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~ 328 (443)
...+|..++|+||+|||||||.+.|+..++
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 456889999999999999999999988663
No 276
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.16 E-value=0.00028 Score=72.40 Aligned_cols=34 Identities=26% Similarity=0.464 Sum_probs=27.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC------------CCCceEEEcC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGIIS------------PTAGTRTVHR 338 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~~------------p~~G~i~~~~ 338 (443)
+++|+|+||||||||++.|+|... |.+|.+.+.+
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g 227 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDG 227 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETT
T ss_pred eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECC
Confidence 699999999999999999999864 5566666543
No 277
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=97.15 E-value=0.00073 Score=67.65 Aligned_cols=68 Identities=13% Similarity=0.197 Sum_probs=50.5
Q ss_pred HHHHHHHHHhCCCCh---------------hhhhccCCCCChHHHH---------------------------------H
Q psy208 116 PARASVILAGLGFTP---------------EMQKRATKHFSGGWRK---------------------------------M 147 (443)
Q Consensus 116 ~~rv~~~L~~lgl~~---------------~~~~~~~~~LSGGqr~---------------------------------~ 147 (443)
..++...+..++++. ...++++..|||||++ .
T Consensus 242 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~ 321 (371)
T 3auy_A 242 QKYLNEAFSEFDLPYSFVELTKDFEVRVHAPNGVLTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDEN 321 (371)
T ss_dssp HHHHHHHHHHTTCSCSCEEECTTCCEEEEETTEEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHH
T ss_pred HHHHHHHHHHhcCcceEEEEccceeEEEEcCCCccchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHH
Confidence 345667788887654 0011678899999998 4
Q ss_pred HHHHHHHHhhhC--CCeEEEEecCHHHHhccCCcEEEEe
Q psy208 148 AIIWLENYLQNW--PTTLLVVSHDRHFLDSVPTDIFHLH 184 (443)
Q Consensus 148 ~i~wL~~~L~~~--~~tviiVSHDr~fLd~v~~~i~~l~ 184 (443)
...++.++|++. .++||+||||.+ +..+|++++.|+
T Consensus 322 ~~~~l~~~l~~~~~~~~vi~~th~~~-~~~~~d~~~~l~ 359 (371)
T 3auy_A 322 RRAKLAEIFRKVKSIPQMIIITHHRE-LEDVADVIINVK 359 (371)
T ss_dssp HHHHHHHHHHHCCSCSEEEEEESCGG-GGGGCSEEEEEE
T ss_pred HHHHHHHHHHHhccCCeEEEEEChHH-HHhhCCEEEEEE
Confidence 556777777654 359999999987 578999999997
No 278
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.12 E-value=0.0012 Score=64.70 Aligned_cols=28 Identities=25% Similarity=0.297 Sum_probs=25.4
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHHcC
Q psy208 299 GATLESRICIVGDNGAGKTTLLKIIMGI 326 (443)
Q Consensus 299 ~i~~Ge~i~iiG~NGsGKSTLlk~l~G~ 326 (443)
-+++|+++.|.|++|||||||+..++..
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~ 130 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVN 130 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHH
Confidence 5789999999999999999999888764
No 279
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.09 E-value=0.00025 Score=66.16 Aligned_cols=121 Identities=13% Similarity=0.071 Sum_probs=59.3
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCceEEEEeccCcccccccchhHHHHHHHhCCCCCHHHHHHHHhc
Q psy208 302 LESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGG 381 (443)
Q Consensus 302 ~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ig~~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 381 (443)
.|+.++|+||+||||||++.++........|. . ..++++.+.+...+ .....+.+...+.... -..
T Consensus 75 ~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~---~--~~~~~l~~~p~~~l--a~q~~~~~~~~~~~~~-------~~~ 140 (235)
T 3llm_A 75 QNSVVIIRGATGCGKTTQVPQFILDDFIQNDR---A--AECNIVVTQPRRIS--AVSVAERVAFERGEEP-------GKS 140 (235)
T ss_dssp HCSEEEEECCTTSSHHHHHHHHHHHHHHHTTC---G--GGCEEEEEESSHHH--HHHHHHHHHHTTTCCT-------TSS
T ss_pred cCCEEEEEeCCCCCcHHhHHHHHhcchhhcCC---C--CceEEEEeccchHH--HHHHHHHHHHHhcccc-------Cce
Confidence 57889999999999999888765322111121 0 11233333332111 1222233322211100 000
Q ss_pred CCCChhhh------hccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCC-CCCHHHHH-HHHHHH
Q psy208 382 FGVSGDLA------LQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTN-HLDIETIE-ALGKAI 438 (443)
Q Consensus 382 ~gl~~~~~------~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn-~LD~~s~~-~l~~~L 438 (443)
.|...... +..+--.+.|.-.+.. ...+.+.+++|+||.-. ++|..... .+...+
T Consensus 141 ~g~~~~~~~~~~~~~~~Ivv~Tpg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~ 203 (235)
T 3llm_A 141 CGYSVRFESILPRPHASIMFCTVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVVLRDVV 203 (235)
T ss_dssp EEEEETTEEECCCSSSEEEEEEHHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHHHHHHHHH
T ss_pred EEEeechhhccCCCCCeEEEECHHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHHHHHHHHH
Confidence 11000000 0112234567666653 33688999999999965 57777663 334433
No 280
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.09 E-value=0.00015 Score=72.57 Aligned_cols=36 Identities=25% Similarity=0.284 Sum_probs=31.2
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceE
Q psy208 299 GATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTR 334 (443)
Q Consensus 299 ~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i 334 (443)
-|.+|+++.|+||||||||||+..+++...+..|.+
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~V 92 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVA 92 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 378999999999999999999999998877666643
No 281
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.08 E-value=4.1e-05 Score=75.59 Aligned_cols=44 Identities=18% Similarity=0.134 Sum_probs=37.9
Q ss_pred CCceeeeeeEEEeCCCE--EEEECCCCCcHHHHHHHHHcCCCCCCc
Q psy208 289 GKPILTNVCLGATLESR--ICIVGDNGAGKTTLLKIIMGIISPTAG 332 (443)
Q Consensus 289 ~~~il~~vsl~i~~Ge~--i~iiG~NGsGKSTLlk~l~G~~~p~~G 332 (443)
...+++.++..|..|+. +.+.||+|+||||+++++++.+.+..+
T Consensus 30 ~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~ 75 (340)
T 1sxj_C 30 QNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNY 75 (340)
T ss_dssp CHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSH
T ss_pred cHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCc
Confidence 45688889999999988 999999999999999999998765543
No 282
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.07 E-value=7.8e-05 Score=74.31 Aligned_cols=37 Identities=27% Similarity=0.377 Sum_probs=33.2
Q ss_pred ceeeeeeEEEeCCCE--EEEECCCCCcHHHHHHHHHcCC
Q psy208 291 PILTNVCLGATLESR--ICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 291 ~il~~vsl~i~~Ge~--i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
.+++.+++.+.+|++ ++|+|++||||||+.++|++.+
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 467888889999998 9999999999999999998854
No 283
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.04 E-value=0.00027 Score=64.10 Aligned_cols=25 Identities=24% Similarity=0.426 Sum_probs=22.4
Q ss_pred CCEEEEECCCCCcHHHHHHHHHcCC
Q psy208 303 ESRICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 303 Ge~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
..+++|+|++||||||+.+.|++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999998765
No 284
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=97.01 E-value=0.00032 Score=62.06 Aligned_cols=22 Identities=27% Similarity=0.665 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGI 326 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~ 326 (443)
+++|+|++|+|||||++.|+|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999985
No 285
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=97.00 E-value=0.00035 Score=65.19 Aligned_cols=26 Identities=35% Similarity=0.424 Sum_probs=23.2
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHHc
Q psy208 300 ATLESRICIVGDNGAGKTTLLKIIMG 325 (443)
Q Consensus 300 i~~Ge~i~iiG~NGsGKSTLlk~l~G 325 (443)
-.+|.+++|+|++||||||+.++|++
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 35788999999999999999999986
No 286
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.99 E-value=0.00028 Score=62.76 Aligned_cols=25 Identities=24% Similarity=0.356 Sum_probs=22.0
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHHc
Q psy208 301 TLESRICIVGDNGAGKTTLLKIIMG 325 (443)
Q Consensus 301 ~~Ge~i~iiG~NGsGKSTLlk~l~G 325 (443)
.+|.+++|+|++||||||+.+.|+.
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3577899999999999999999984
No 287
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.84 E-value=0.00038 Score=65.55 Aligned_cols=34 Identities=29% Similarity=0.353 Sum_probs=24.1
Q ss_pred eeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCC
Q psy208 293 LTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIIS 328 (443)
Q Consensus 293 l~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~ 328 (443)
++++++.+.+| +.|+||+|+|||||+++|++...
T Consensus 37 ~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 37 FQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp C-----CCCCE--EEEECCTTSCHHHHHHHHHHHHT
T ss_pred HHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcC
Confidence 34444444444 89999999999999999998764
No 288
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.82 E-value=0.00074 Score=69.30 Aligned_cols=25 Identities=36% Similarity=0.469 Sum_probs=22.3
Q ss_pred CCEEEEECCCCCcHHHHHHHHHcCC
Q psy208 303 ESRICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 303 Ge~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+.-+.|.||+|+|||||+++|++.+
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l 154 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYV 154 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3568999999999999999999865
No 289
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.78 E-value=0.00035 Score=62.62 Aligned_cols=27 Identities=30% Similarity=0.443 Sum_probs=23.6
Q ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCC
Q psy208 304 SRICIVGDNGAGKTTLLKIIMGIISPT 330 (443)
Q Consensus 304 e~i~iiG~NGsGKSTLlk~l~G~~~p~ 330 (443)
.+++|+|++|||||||++.|.+.+.+.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~ 33 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCAR 33 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhcccc
Confidence 579999999999999999999876543
No 290
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=96.77 E-value=0.00043 Score=71.51 Aligned_cols=75 Identities=8% Similarity=0.139 Sum_probs=57.8
Q ss_pred HHHHHHHhCCCChhhhhccCCCCChHHHH-----HH---------------------------HHHHHHHhhhCCCeEEE
Q psy208 118 RASVILAGLGFTPEMQKRATKHFSGGWRK-----MA---------------------------IIWLENYLQNWPTTLLV 165 (443)
Q Consensus 118 rv~~~L~~lgl~~~~~~~~~~~LSGGqr~-----~~---------------------------i~wL~~~L~~~~~tvii 165 (443)
++..++..+|+... .+ +.+||||||+ .+ ..+|.+.+++++.|+|+
T Consensus 217 ~~~~ll~~~gl~~~-~~--~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~~~~l~~l~~~~~~tvii 293 (460)
T 2npi_A 217 NKQPMVKNFGLERI-NE--NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDENLAELHHIIEKLNVNIML 293 (460)
T ss_dssp CBCCEECCCCSSSG-GG--CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSSCHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHhCCCcc-cc--hhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChhHHHHHHHHHHhCCCEEE
Confidence 45556777888753 23 7899999998 11 34567777778899999
Q ss_pred EecCHH------HHhccCCc-----EEEEe-CCeeEEEcCChhH
Q psy208 166 VSHDRH------FLDSVPTD-----IFHLH-SQRIDTYRGNYEA 197 (443)
Q Consensus 166 VSHDr~------fLd~v~~~-----i~~l~-~g~i~~~~G~y~~ 197 (443)
|+||.. ++..+||+ |+.|+ +|++. .|+...
T Consensus 294 Vth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv--~g~~~~ 335 (460)
T 2npi_A 294 VLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS--AVDDVY 335 (460)
T ss_dssp EECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC--CCCHHH
T ss_pred EEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE--ECCHHH
Confidence 999987 77899999 99999 89986 677543
No 291
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.75 E-value=0.0031 Score=64.69 Aligned_cols=37 Identities=19% Similarity=0.004 Sum_probs=30.6
Q ss_pred ceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCC
Q psy208 291 PILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 291 ~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+-|+.+.--+.+|+.+.|.|++|+|||||+..++...
T Consensus 188 ~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~ 224 (444)
T 2q6t_A 188 KELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNA 224 (444)
T ss_dssp HHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred HhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 4566665558899999999999999999998887654
No 292
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.74 E-value=0.00065 Score=60.95 Aligned_cols=32 Identities=0% Similarity=-0.047 Sum_probs=26.1
Q ss_pred HHHHHHHHhhhCCCeEEEEe---cCHHHHhccCCc
Q psy208 148 AIIWLENYLQNWPTTLLVVS---HDRHFLDSVPTD 179 (443)
Q Consensus 148 ~i~wL~~~L~~~~~tviiVS---HDr~fLd~v~~~ 179 (443)
...++.+.|++.+.|+|++| ||+.|++.+|++
T Consensus 118 ~~~~l~~~l~~~~~~~i~~~H~~h~~~~~~~i~~r 152 (178)
T 1ye8_A 118 FRDLVRQIMHDPNVNVVATIPIRDVHPLVKEIRRL 152 (178)
T ss_dssp HHHHHHHHHTCTTSEEEEECCSSCCSHHHHHHHTC
T ss_pred HHHHHHHHHhcCCCeEEEEEccCCCchHHHHHHhc
Confidence 34578888877777788888 599999999997
No 293
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.72 E-value=0.00076 Score=58.85 Aligned_cols=23 Identities=17% Similarity=0.128 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+++|+|+.||||||+.+.|+..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998653
No 294
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=96.72 E-value=0.00036 Score=75.43 Aligned_cols=38 Identities=26% Similarity=0.434 Sum_probs=30.0
Q ss_pred eEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCC--CCceE
Q psy208 297 CLGATLESRICIVGDNGAGKTTLLKIIMGIISP--TAGTR 334 (443)
Q Consensus 297 sl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p--~~G~i 334 (443)
|+.+.+|.+++|+|+||+|||||++.|++...+ ..|+|
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V 42 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV 42 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee
Confidence 456788999999999999999999999976654 45654
No 295
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.70 E-value=0.00059 Score=75.35 Aligned_cols=33 Identities=21% Similarity=0.377 Sum_probs=29.5
Q ss_pred eEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCC
Q psy208 297 CLGATLESRICIVGDNGAGKTTLLKIIMGIISP 329 (443)
Q Consensus 297 sl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p 329 (443)
+|.+.+|+.++|+||||||||||+++|++.+.+
T Consensus 232 ~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~ 264 (806)
T 1ypw_A 232 AIGVKPPRGILLYGPPGTGKTLIARAVANETGA 264 (806)
T ss_dssp SSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTC
T ss_pred hcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCC
Confidence 346889999999999999999999999998754
No 296
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=96.70 E-value=0.00056 Score=68.84 Aligned_cols=35 Identities=20% Similarity=0.192 Sum_probs=29.9
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEE
Q psy208 302 LESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTV 336 (443)
Q Consensus 302 ~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~ 336 (443)
.+..++|+|++|||||||++.|++...+..+.|.+
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~ 68 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVII 68 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEE
Confidence 56679999999999999999999887777777654
No 297
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.65 E-value=0.00034 Score=66.15 Aligned_cols=30 Identities=30% Similarity=0.370 Sum_probs=25.9
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHHcCCC
Q psy208 299 GATLESRICIVGDNGAGKTTLLKIIMGIIS 328 (443)
Q Consensus 299 ~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~ 328 (443)
...++.++.|+|++||||||+.+.|+..+.
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 445677899999999999999999998764
No 298
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.62 E-value=0.00052 Score=64.47 Aligned_cols=32 Identities=19% Similarity=0.322 Sum_probs=25.2
Q ss_pred CCEEEEECCCCCcHHHHHHHHH---cCCCCCCceE
Q psy208 303 ESRICIVGDNGAGKTTLLKIIM---GIISPTAGTR 334 (443)
Q Consensus 303 Ge~i~iiG~NGsGKSTLlk~l~---G~~~p~~G~i 334 (443)
.-+++|+||+||||||+.+.|+ |....+.|.+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~ 43 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAM 43 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcH
Confidence 4589999999999999999998 5444455543
No 299
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.59 E-value=0.0012 Score=58.59 Aligned_cols=25 Identities=24% Similarity=0.403 Sum_probs=22.1
Q ss_pred CCEEEEECCCCCcHHHHHHHHHcCC
Q psy208 303 ESRICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 303 Ge~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
|-+++|.|+.||||||+.+.|+-.+
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999997643
No 300
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.57 E-value=0.0013 Score=57.89 Aligned_cols=27 Identities=19% Similarity=0.439 Sum_probs=23.5
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHcCCC
Q psy208 302 LESRICIVGDNGAGKTTLLKIIMGIIS 328 (443)
Q Consensus 302 ~Ge~i~iiG~NGsGKSTLlk~l~G~~~ 328 (443)
.|..+.|+|+.||||||+.+.|+..+.
T Consensus 2 ~~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 2 TTRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 356899999999999999999997653
No 301
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=96.54 E-value=0.0018 Score=64.69 Aligned_cols=35 Identities=29% Similarity=0.420 Sum_probs=28.4
Q ss_pred CCEEEEECCCCCcHHHHHHHHHc-----------CCCCCCceEEEc
Q psy208 303 ESRICIVGDNGAGKTTLLKIIMG-----------IISPTAGTRTVH 337 (443)
Q Consensus 303 Ge~i~iiG~NGsGKSTLlk~l~G-----------~~~p~~G~i~~~ 337 (443)
|-+++|+|.+|+|||||++.|+| .+.|..|.+.+.
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~ 47 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMP 47 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecC
Confidence 45799999999999999999998 345666766553
No 302
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.54 E-value=0.0011 Score=60.69 Aligned_cols=23 Identities=22% Similarity=0.420 Sum_probs=21.2
Q ss_pred CCEEEEECCCCCcHHHHHHHHHc
Q psy208 303 ESRICIVGDNGAGKTTLLKIIMG 325 (443)
Q Consensus 303 Ge~i~iiG~NGsGKSTLlk~l~G 325 (443)
+-+++|+|++||||||+.++|+.
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999997
No 303
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.53 E-value=0.0011 Score=58.53 Aligned_cols=23 Identities=30% Similarity=0.501 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+++|+|++||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58999999999999999998654
No 304
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.52 E-value=0.0013 Score=57.21 Aligned_cols=19 Identities=37% Similarity=0.627 Sum_probs=18.3
Q ss_pred EEEEECCCCCcHHHHHHHH
Q psy208 305 RICIVGDNGAGKTTLLKII 323 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l 323 (443)
+++|+|+.||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
No 305
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.51 E-value=0.01 Score=60.84 Aligned_cols=28 Identities=25% Similarity=0.343 Sum_probs=23.9
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHcCCCC
Q psy208 302 LESRICIVGDNGAGKTTLLKIIMGIISP 329 (443)
Q Consensus 302 ~Ge~i~iiG~NGsGKSTLlk~l~G~~~p 329 (443)
++.+++++|++||||||++..|+..+..
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~ 126 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQK 126 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHH
Confidence 3568999999999999999999876654
No 306
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.50 E-value=0.0013 Score=58.96 Aligned_cols=22 Identities=41% Similarity=0.539 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGI 326 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~ 326 (443)
+++|+|+.||||||+.+.|+..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 6899999999999999999984
No 307
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=96.50 E-value=0.0011 Score=63.05 Aligned_cols=24 Identities=29% Similarity=0.653 Sum_probs=22.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGIIS 328 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~~ 328 (443)
+++|+|++|||||||++.|+|...
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~~ 28 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLRQ 28 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTCE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 589999999999999999999754
No 308
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.46 E-value=0.0013 Score=62.16 Aligned_cols=23 Identities=26% Similarity=0.167 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
.++|+||||||||||.+.|++.+
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 58999999999999999998754
No 309
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.45 E-value=0.00037 Score=63.40 Aligned_cols=26 Identities=38% Similarity=0.580 Sum_probs=22.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGIISPT 330 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~~p~ 330 (443)
+++|+|++||||||+++.|+..+.+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~ 27 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAA 27 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 68999999999999999998876543
No 310
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.43 E-value=0.0012 Score=58.80 Aligned_cols=27 Identities=26% Similarity=0.335 Sum_probs=23.0
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHHcCC
Q psy208 301 TLESRICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 301 ~~Ge~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
.++.++.|+|+.||||||+.+.|+..+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 356789999999999999999997643
No 311
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.37 E-value=0.0021 Score=57.77 Aligned_cols=26 Identities=35% Similarity=0.271 Sum_probs=24.0
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHcCC
Q psy208 302 LESRICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 302 ~Ge~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+|-+|+|+|+.||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57889999999999999999999876
No 312
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.36 E-value=0.0018 Score=56.79 Aligned_cols=21 Identities=29% Similarity=0.457 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q psy208 305 RICIVGDNGAGKTTLLKIIMG 325 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G 325 (443)
++.|+|++||||||+.+.|+.
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHh
Confidence 689999999999999999986
No 313
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.35 E-value=0.0012 Score=58.50 Aligned_cols=26 Identities=38% Similarity=0.441 Sum_probs=22.6
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHHcC
Q psy208 301 TLESRICIVGDNGAGKTTLLKIIMGI 326 (443)
Q Consensus 301 ~~Ge~i~iiG~NGsGKSTLlk~l~G~ 326 (443)
..+..+.|+|+.||||||+.+.|+..
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 45678999999999999999999843
No 314
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.33 E-value=0.0018 Score=58.61 Aligned_cols=22 Identities=45% Similarity=0.688 Sum_probs=19.3
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q psy208 306 ICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 306 i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+.|+||+|||||||++.|....
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 7899999999999999987543
No 315
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=96.32 E-value=0.0024 Score=63.75 Aligned_cols=58 Identities=10% Similarity=0.020 Sum_probs=47.3
Q ss_pred hccCC-CCChHHHH-----------------------------------HHHHHHHHHhhhCCCeEEEEecCHHHHhccC
Q psy208 134 KRATK-HFSGGWRK-----------------------------------MAIIWLENYLQNWPTTLLVVSHDRHFLDSVP 177 (443)
Q Consensus 134 ~~~~~-~LSGGqr~-----------------------------------~~i~wL~~~L~~~~~tviiVSHDr~fLd~v~ 177 (443)
++++. .||||||+ .....|.+.|++...|+|++||+ +. .|
T Consensus 259 ~~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~qt~i~~th~-~~---~~ 334 (359)
T 2o5v_A 259 DFPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVPQAIVTGTEL-AP---GA 334 (359)
T ss_dssp TEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSSEEEEEESSC-CT---TC
T ss_pred CcchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcCcEEEEEEec-cc---cC
Confidence 46787 89999998 56778888887777899999995 33 89
Q ss_pred CcEEEEeCCeeEEEcCChh
Q psy208 178 TDIFHLHSQRIDTYRGNYE 196 (443)
Q Consensus 178 ~~i~~l~~g~i~~~~G~y~ 196 (443)
++|++|++|++.. .|+.+
T Consensus 335 ~~i~~l~~G~i~~-~g~~~ 352 (359)
T 2o5v_A 335 ALTLRAQAGRFTP-VADEE 352 (359)
T ss_dssp SEEEEEETTEEEE-CCCTT
T ss_pred CEEEEEECCEEEe-cCCHH
Confidence 9999999999964 56654
No 316
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.31 E-value=0.0022 Score=56.84 Aligned_cols=26 Identities=27% Similarity=0.353 Sum_probs=22.0
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHcCC
Q psy208 302 LESRICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 302 ~Ge~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
.+..++|+|+.||||||+.+.|+..+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999997543
No 317
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.30 E-value=0.0019 Score=58.05 Aligned_cols=23 Identities=30% Similarity=0.465 Sum_probs=21.2
Q ss_pred CEEEEECCCCCcHHHHHHHHHcC
Q psy208 304 SRICIVGDNGAGKTTLLKIIMGI 326 (443)
Q Consensus 304 e~i~iiG~NGsGKSTLlk~l~G~ 326 (443)
.+++|+|+.||||||+.+.|+..
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHC
Confidence 46999999999999999999975
No 318
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.25 E-value=0.0023 Score=57.03 Aligned_cols=26 Identities=31% Similarity=0.377 Sum_probs=22.9
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHHcC
Q psy208 301 TLESRICIVGDNGAGKTTLLKIIMGI 326 (443)
Q Consensus 301 ~~Ge~i~iiG~NGsGKSTLlk~l~G~ 326 (443)
.++-+++|+|+.||||||+.+.|+..
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~ 32 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQK 32 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 35678999999999999999999854
No 319
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=96.23 E-value=0.0028 Score=56.23 Aligned_cols=25 Identities=32% Similarity=0.461 Sum_probs=22.4
Q ss_pred CEEEEECCCCCcHHHHHHHHHcCCC
Q psy208 304 SRICIVGDNGAGKTTLLKIIMGIIS 328 (443)
Q Consensus 304 e~i~iiG~NGsGKSTLlk~l~G~~~ 328 (443)
=+++|+|+.|||||||++.|++...
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~~~ 73 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTDSV 73 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3799999999999999999998753
No 320
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=96.22 E-value=0.0035 Score=53.91 Aligned_cols=23 Identities=26% Similarity=0.712 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+++|+|+.|+|||||++.+.+..
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998865
No 321
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.21 E-value=0.0023 Score=56.82 Aligned_cols=24 Identities=29% Similarity=0.354 Sum_probs=21.1
Q ss_pred CCEEEEECCCCCcHHHHHHHHHcC
Q psy208 303 ESRICIVGDNGAGKTTLLKIIMGI 326 (443)
Q Consensus 303 Ge~i~iiG~NGsGKSTLlk~l~G~ 326 (443)
+-+|+|+|+.||||||+.+.|+..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999999753
No 322
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=96.20 E-value=0.0033 Score=53.98 Aligned_cols=23 Identities=22% Similarity=0.520 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+++|+|+.|+|||||++.+.+..
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998754
No 323
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.20 E-value=0.0024 Score=57.62 Aligned_cols=28 Identities=21% Similarity=0.296 Sum_probs=24.0
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHcCCCC
Q psy208 302 LESRICIVGDNGAGKTTLLKIIMGIISP 329 (443)
Q Consensus 302 ~Ge~i~iiG~NGsGKSTLlk~l~G~~~p 329 (443)
+|-+|+|.|+.||||||+.+.|+..+..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 4668999999999999999999875543
No 324
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=96.20 E-value=0.0031 Score=60.40 Aligned_cols=23 Identities=35% Similarity=0.704 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+++|+|++|||||||++.|+|..
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 68999999999999999999964
No 325
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.20 E-value=0.0025 Score=57.62 Aligned_cols=26 Identities=23% Similarity=0.272 Sum_probs=23.1
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHHcC
Q psy208 301 TLESRICIVGDNGAGKTTLLKIIMGI 326 (443)
Q Consensus 301 ~~Ge~i~iiG~NGsGKSTLlk~l~G~ 326 (443)
.+|-+++|+|+.||||||+.+.|+..
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 46789999999999999999999853
No 326
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.17 E-value=0.0017 Score=62.97 Aligned_cols=31 Identities=32% Similarity=0.402 Sum_probs=26.8
Q ss_pred EEEeCCCEEEEECCCCCcHHHHHHHHHcCCC
Q psy208 298 LGATLESRICIVGDNGAGKTTLLKIIMGIIS 328 (443)
Q Consensus 298 l~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~ 328 (443)
+.+.++..+.|.||+|+|||||+++|++...
T Consensus 44 ~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~ 74 (301)
T 3cf0_A 44 FGMTPSKGVLFYGPPGCGKTLLAKAIANECQ 74 (301)
T ss_dssp HCCCCCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred cCCCCCceEEEECCCCcCHHHHHHHHHHHhC
Confidence 3456788899999999999999999998753
No 327
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.17 E-value=0.0025 Score=57.44 Aligned_cols=23 Identities=17% Similarity=0.411 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+++|+|++||||||+.+.|+..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 79999999999999999998743
No 328
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=96.17 E-value=0.0021 Score=56.86 Aligned_cols=23 Identities=48% Similarity=0.573 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+++|+|++|+|||||++.+.+..
T Consensus 18 ki~ivG~~~vGKSsL~~~l~~~~ 40 (181)
T 1fzq_A 18 RILLLGLDNAGKTTLLKQLASED 40 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHCCSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 69999999999999999999863
No 329
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=96.14 E-value=0.0029 Score=54.78 Aligned_cols=23 Identities=39% Similarity=0.752 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+++|+|+.|+|||||++.+.+..
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 58999999999999999999864
No 330
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=96.14 E-value=0.0023 Score=55.06 Aligned_cols=24 Identities=29% Similarity=0.659 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGIIS 328 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~~ 328 (443)
+++|+|+.|+|||||++.++|...
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~~ 27 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVED 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC--
T ss_pred EEEEECCCCCCHHHHHHHHcCccc
Confidence 589999999999999999988653
No 331
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=96.11 E-value=0.0029 Score=53.96 Aligned_cols=23 Identities=26% Similarity=0.527 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+++|+|+.|+|||||++.+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998864
No 332
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=96.11 E-value=0.0032 Score=54.29 Aligned_cols=24 Identities=33% Similarity=0.671 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGIIS 328 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~~ 328 (443)
+++|+|+.|+|||||++.+++...
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~~~ 27 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGLQG 27 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHHhccC
Confidence 589999999999999999987543
No 333
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.11 E-value=0.003 Score=57.24 Aligned_cols=26 Identities=23% Similarity=0.276 Sum_probs=23.3
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHHcC
Q psy208 301 TLESRICIVGDNGAGKTTLLKIIMGI 326 (443)
Q Consensus 301 ~~Ge~i~iiG~NGsGKSTLlk~l~G~ 326 (443)
.+|-+|+|+|+.||||||+.+.|+..
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999999999999853
No 334
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.10 E-value=0.0022 Score=56.59 Aligned_cols=26 Identities=27% Similarity=0.269 Sum_probs=18.2
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHcCC
Q psy208 302 LESRICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 302 ~Ge~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
++.++.|+|+.||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 46789999999999999999998543
No 335
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.09 E-value=0.0043 Score=53.34 Aligned_cols=22 Identities=27% Similarity=0.546 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGI 326 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~ 326 (443)
+++|+|+.|+|||||++.+.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999874
No 336
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=96.08 E-value=0.0055 Score=54.37 Aligned_cols=28 Identities=32% Similarity=0.583 Sum_probs=21.8
Q ss_pred EEEEECCCCCcHHHHHHHHHc-C----CCCCCc
Q psy208 305 RICIVGDNGAGKTTLLKIIMG-I----ISPTAG 332 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G-~----~~p~~G 332 (443)
+++|+|+.|+|||||++.+++ . ..|+.|
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~ 54 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTGTYVQEESPEGG 54 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcc
Confidence 589999999999999975554 3 456655
No 337
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.07 E-value=0.0031 Score=56.28 Aligned_cols=23 Identities=26% Similarity=0.502 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+|+|.|+.||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998654
No 338
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.07 E-value=0.0025 Score=61.52 Aligned_cols=26 Identities=27% Similarity=0.360 Sum_probs=22.3
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHcCC
Q psy208 302 LESRICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 302 ~Ge~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
.|..+.|+||+||||||+.+.|+..+
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34579999999999999999998654
No 339
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.07 E-value=0.0029 Score=56.07 Aligned_cols=23 Identities=30% Similarity=0.414 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+|+|+|+.||||||+.+.|+..+
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998754
No 340
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=96.06 E-value=0.0033 Score=55.51 Aligned_cols=25 Identities=36% Similarity=0.404 Sum_probs=22.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGIISP 329 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~~p 329 (443)
+++|+|+.|+|||||++.+.|...+
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~~ 40 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVPE 40 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSCG
T ss_pred EEEEECCCCCCHHHHHHHHHhhccc
Confidence 5899999999999999999987643
No 341
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=96.06 E-value=0.0038 Score=53.17 Aligned_cols=23 Identities=26% Similarity=0.512 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+++++|+.|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58999999999999999998764
No 342
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=96.06 E-value=0.0043 Score=53.13 Aligned_cols=22 Identities=23% Similarity=0.496 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGI 326 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~ 326 (443)
+++|+|+.|+|||||++.+.+-
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999874
No 343
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=96.05 E-value=0.0043 Score=53.39 Aligned_cols=23 Identities=22% Similarity=0.378 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+++|+|+.|+|||||++.+.+..
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998753
No 344
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.05 E-value=0.0042 Score=53.28 Aligned_cols=23 Identities=13% Similarity=0.421 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+++|+|+.|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998754
No 345
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=96.04 E-value=0.003 Score=54.92 Aligned_cols=23 Identities=35% Similarity=0.628 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+++|+|+.|+|||||++.|.+..
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~~ 33 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADNT 33 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998754
No 346
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.04 E-value=0.0044 Score=52.91 Aligned_cols=23 Identities=22% Similarity=0.469 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+++|+|+.|+|||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999988643
No 347
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=96.02 E-value=0.0044 Score=53.90 Aligned_cols=23 Identities=35% Similarity=0.632 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+++|+|+.|||||||++.+.+..
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58999999999999999988754
No 348
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=96.02 E-value=0.0044 Score=52.97 Aligned_cols=23 Identities=30% Similarity=0.439 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+++|+|+.|+|||||++.+.+..
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58999999999999999998753
No 349
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.02 E-value=0.0013 Score=58.93 Aligned_cols=28 Identities=25% Similarity=0.275 Sum_probs=24.0
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHHcCC
Q psy208 300 ATLESRICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 300 i~~Ge~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+.++-+++|+|+.||||||+.+.|+..+
T Consensus 9 ~~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 9 LRKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4467789999999999999999998643
No 350
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.01 E-value=0.0021 Score=61.80 Aligned_cols=31 Identities=26% Similarity=0.379 Sum_probs=26.5
Q ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCCCceE
Q psy208 304 SRICIVGDNGAGKTTLLKIIMGIISPTAGTR 334 (443)
Q Consensus 304 e~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i 334 (443)
..+.|+||+|+|||||.++|++.+.+..|.+
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~~ 78 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDTEEAM 78 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSCGGGE
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCCCcce
Confidence 3689999999999999999999887766643
No 351
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.00 E-value=0.0035 Score=55.82 Aligned_cols=26 Identities=27% Similarity=0.296 Sum_probs=22.5
Q ss_pred CEEEEECCCCCcHHHHHHHHHcCCCC
Q psy208 304 SRICIVGDNGAGKTTLLKIIMGIISP 329 (443)
Q Consensus 304 e~i~iiG~NGsGKSTLlk~l~G~~~p 329 (443)
-+++|+|++|||||||+..|+..+.+
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~ 30 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVR 30 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHh
Confidence 36899999999999999999887653
No 352
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.98 E-value=0.0041 Score=56.98 Aligned_cols=26 Identities=27% Similarity=0.351 Sum_probs=22.7
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHcCC
Q psy208 302 LESRICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 302 ~Ge~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+|-+++|+|+.||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 46789999999999999999998643
No 353
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=95.97 E-value=0.0041 Score=54.69 Aligned_cols=23 Identities=30% Similarity=0.468 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+++|+|+.|+|||||++.+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCcC
Confidence 58999999999999999999864
No 354
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=95.97 E-value=0.0074 Score=51.79 Aligned_cols=23 Identities=35% Similarity=0.589 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+++|+|+.|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 58999999999999999998764
No 355
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.96 E-value=0.0021 Score=56.28 Aligned_cols=22 Identities=50% Similarity=0.593 Sum_probs=20.2
Q ss_pred CEEEEECCCCCcHHHHHHHHHc
Q psy208 304 SRICIVGDNGAGKTTLLKIIMG 325 (443)
Q Consensus 304 e~i~iiG~NGsGKSTLlk~l~G 325 (443)
=+++|+|++|+|||||++.+.+
T Consensus 19 ~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 19 LRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp EEEEEEEETTSSHHHHHHHTCC
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 3799999999999999999985
No 356
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.96 E-value=0.016 Score=59.35 Aligned_cols=34 Identities=18% Similarity=0.135 Sum_probs=27.2
Q ss_pred eeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHc
Q psy208 292 ILTNVCLGATLESRICIVGDNGAGKTTLLKIIMG 325 (443)
Q Consensus 292 il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G 325 (443)
-|+.+.--+.+|+.+.|.|+.|+|||||+--++.
T Consensus 186 ~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~ 219 (444)
T 3bgw_A 186 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 219 (444)
T ss_dssp HHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHH
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHH
Confidence 4444443588999999999999999999877664
No 357
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=95.95 E-value=0.0048 Score=53.57 Aligned_cols=23 Identities=26% Similarity=0.589 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+++|+|+.|+|||||++.+.+..
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998754
No 358
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.93 E-value=0.0038 Score=56.82 Aligned_cols=22 Identities=36% Similarity=0.466 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGI 326 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~ 326 (443)
+++|+|+.||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999653
No 359
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=95.93 E-value=0.0033 Score=55.71 Aligned_cols=24 Identities=17% Similarity=0.469 Sum_probs=21.2
Q ss_pred CEEEEECCCCCcHHHHHHHHHcCC
Q psy208 304 SRICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 304 e~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
=+++|+|+.|+|||||++.|.+..
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTC-
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 469999999999999999999864
No 360
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=95.93 E-value=0.0045 Score=58.19 Aligned_cols=24 Identities=38% Similarity=0.591 Sum_probs=21.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGIIS 328 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~~ 328 (443)
+|+|+|+.|+|||||++.|+|...
T Consensus 23 ~I~lvG~~g~GKSSlin~l~~~~~ 46 (247)
T 3lxw_A 23 RLILVGRTGAGKSATGNSILGQRR 46 (247)
T ss_dssp EEEEESSTTSSHHHHHHHHHTSCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 589999999999999999998754
No 361
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=95.93 E-value=0.0034 Score=55.42 Aligned_cols=23 Identities=26% Similarity=0.540 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+++|+|+.|+|||||++.+.+..
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 79999999999999999999864
No 362
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=95.92 E-value=0.0063 Score=52.85 Aligned_cols=26 Identities=35% Similarity=0.354 Sum_probs=22.5
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHcCC
Q psy208 302 LESRICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 302 ~Ge~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+.-+++|+|+.|+|||||++.+.+..
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~~ 32 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHSK 32 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 44579999999999999999998753
No 363
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=95.91 E-value=0.0036 Score=54.38 Aligned_cols=22 Identities=27% Similarity=0.563 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGI 326 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~ 326 (443)
+++|+|+.|+|||||++.+.+.
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999876
No 364
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=95.90 E-value=0.0054 Score=53.75 Aligned_cols=23 Identities=26% Similarity=0.538 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+++|+|+.|+|||||++.|.+..
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999998754
No 365
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=95.89 E-value=0.0042 Score=53.30 Aligned_cols=22 Identities=18% Similarity=0.486 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGI 326 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~ 326 (443)
+++|+|+.|+|||||++.+.+-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 366
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.89 E-value=0.0042 Score=57.28 Aligned_cols=27 Identities=30% Similarity=0.320 Sum_probs=22.1
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHHcCC
Q psy208 301 TLESRICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 301 ~~Ge~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
.++-+++|+|+.||||||+.+.|+..+
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 345789999999999999999998543
No 367
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=95.87 E-value=0.0042 Score=55.13 Aligned_cols=23 Identities=30% Similarity=0.595 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+++|+|+.|+|||||++.+.+..
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48999999999999999998853
No 368
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=95.86 E-value=0.0044 Score=53.41 Aligned_cols=22 Identities=50% Similarity=0.575 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGI 326 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~ 326 (443)
+++|+|+.|+|||||++.+.+-
T Consensus 9 ~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 9 RILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999764
No 369
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.85 E-value=0.0047 Score=53.69 Aligned_cols=22 Identities=27% Similarity=0.392 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGI 326 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~ 326 (443)
+++|+|+.||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRS 23 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999864
No 370
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=95.84 E-value=0.0045 Score=53.03 Aligned_cols=22 Identities=45% Similarity=0.466 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGI 326 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~ 326 (443)
+++|+|+.|+|||||++.+.+-
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999763
No 371
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.83 E-value=0.0045 Score=56.41 Aligned_cols=23 Identities=30% Similarity=0.352 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+++|+|+.||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999997543
No 372
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=95.83 E-value=0.0059 Score=53.94 Aligned_cols=23 Identities=13% Similarity=0.393 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+++|+|+.|+|||||++.|.+..
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58999999999999999999864
No 373
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=95.83 E-value=0.005 Score=53.52 Aligned_cols=23 Identities=30% Similarity=0.528 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+++|+|+.|+|||||++.+.+..
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~~ 30 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQET 30 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGGG
T ss_pred EEEEECcCCCCHHHHHHHHHhCc
Confidence 58999999999999999998754
No 374
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.81 E-value=0.0047 Score=54.78 Aligned_cols=23 Identities=35% Similarity=0.452 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+++|+|+.||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998643
No 375
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=95.81 E-value=0.0061 Score=53.50 Aligned_cols=23 Identities=30% Similarity=0.434 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+++|+|+.|+|||||++.+.+..
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~~ 35 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDGK 35 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998743
No 376
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.80 E-value=0.0056 Score=55.17 Aligned_cols=25 Identities=28% Similarity=0.343 Sum_probs=21.8
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHcC
Q psy208 302 LESRICIVGDNGAGKTTLLKIIMGI 326 (443)
Q Consensus 302 ~Ge~i~iiG~NGsGKSTLlk~l~G~ 326 (443)
.+-+|+|+|+.||||||+.+.|+..
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~ 43 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEK 43 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3457999999999999999999864
No 377
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.80 E-value=0.0044 Score=54.12 Aligned_cols=23 Identities=30% Similarity=0.436 Sum_probs=20.5
Q ss_pred CEEEEECCCCCcHHHHHHHHHcC
Q psy208 304 SRICIVGDNGAGKTTLLKIIMGI 326 (443)
Q Consensus 304 e~i~iiG~NGsGKSTLlk~l~G~ 326 (443)
.+++|+|+.||||||+.+.|+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARA 25 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999864
No 378
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=95.79 E-value=0.0057 Score=53.01 Aligned_cols=23 Identities=26% Similarity=0.476 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+++|+|+.|+|||||++.+.+..
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~~ 38 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYDS 38 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998643
No 379
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=95.75 E-value=0.0066 Score=52.58 Aligned_cols=23 Identities=35% Similarity=0.533 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+++|+|+.|+|||||++.+.+..
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998754
No 380
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=95.75 E-value=0.0067 Score=52.95 Aligned_cols=23 Identities=30% Similarity=0.439 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+++|+|+.|+|||||++.+.+..
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhhCC
Confidence 58999999999999999998753
No 381
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=95.75 E-value=0.005 Score=54.37 Aligned_cols=23 Identities=26% Similarity=0.512 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+++|+|+.|+|||||++.|++..
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998754
No 382
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.73 E-value=0.0049 Score=54.57 Aligned_cols=23 Identities=26% Similarity=0.368 Sum_probs=20.6
Q ss_pred CEEEEECCCCCcHHHHHHHHHcC
Q psy208 304 SRICIVGDNGAGKTTLLKIIMGI 326 (443)
Q Consensus 304 e~i~iiG~NGsGKSTLlk~l~G~ 326 (443)
.+++|+|+.||||||+.+.|+..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999753
No 383
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.72 E-value=0.0053 Score=53.46 Aligned_cols=23 Identities=39% Similarity=0.582 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+++|+|+.|+|||||++.+.+..
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 58999999999999999998754
No 384
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=95.72 E-value=0.0068 Score=53.08 Aligned_cols=23 Identities=35% Similarity=0.645 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+++|+|+.|+|||||++.+.+..
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~~ 42 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQKI 42 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 48999999999999999998653
No 385
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=95.72 E-value=0.0062 Score=53.69 Aligned_cols=23 Identities=39% Similarity=0.635 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+++|+|+.|+|||||++.+.+..
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~~ 31 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKDC 31 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998753
No 386
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=95.72 E-value=0.0063 Score=53.34 Aligned_cols=23 Identities=26% Similarity=0.582 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+++|+|+.|+|||||++.+.+..
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998754
No 387
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=95.71 E-value=0.004 Score=55.88 Aligned_cols=22 Identities=36% Similarity=0.754 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGI 326 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~ 326 (443)
+++|+|+.|+|||||++.++|.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5899999999999999999764
No 388
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.70 E-value=0.0048 Score=56.59 Aligned_cols=26 Identities=23% Similarity=0.246 Sum_probs=22.1
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHcCC
Q psy208 302 LESRICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 302 ~Ge~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
.+-+++|+|+.||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34679999999999999999997543
No 389
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=95.69 E-value=0.007 Score=53.54 Aligned_cols=23 Identities=30% Similarity=0.567 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+++|+|+.|+|||||++.+.+..
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998854
No 390
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=95.68 E-value=0.005 Score=55.41 Aligned_cols=26 Identities=31% Similarity=0.442 Sum_probs=22.9
Q ss_pred CEEEEECCCCCcHHHHHHHHHcCCCC
Q psy208 304 SRICIVGDNGAGKTTLLKIIMGIISP 329 (443)
Q Consensus 304 e~i~iiG~NGsGKSTLlk~l~G~~~p 329 (443)
..+.|.||+|+|||||++.|+.....
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~ 80 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAK 80 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 57899999999999999999986644
No 391
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=95.68 E-value=0.0075 Score=52.50 Aligned_cols=23 Identities=30% Similarity=0.553 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+++|+|+.|+|||||++.+.+..
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998764
No 392
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.68 E-value=0.0052 Score=54.40 Aligned_cols=23 Identities=26% Similarity=0.445 Sum_probs=20.6
Q ss_pred CEEEEECCCCCcHHHHHHHHHcC
Q psy208 304 SRICIVGDNGAGKTTLLKIIMGI 326 (443)
Q Consensus 304 e~i~iiG~NGsGKSTLlk~l~G~ 326 (443)
-+|+|+|+.||||||+.+.|+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKA 25 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999753
No 393
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=95.67 E-value=0.0056 Score=54.82 Aligned_cols=22 Identities=41% Similarity=0.936 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGI 326 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~ 326 (443)
+++|+|++|+|||||++.++|.
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5999999999999999999873
No 394
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=95.65 E-value=0.0063 Score=55.59 Aligned_cols=28 Identities=18% Similarity=0.178 Sum_probs=24.3
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHcCCCC
Q psy208 302 LESRICIVGDNGAGKTTLLKIIMGIISP 329 (443)
Q Consensus 302 ~Ge~i~iiG~NGsGKSTLlk~l~G~~~p 329 (443)
.+..+.|.||+|+|||||++.++.....
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~ 78 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANE 78 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5778999999999999999999876543
No 395
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=95.64 E-value=0.0052 Score=58.19 Aligned_cols=23 Identities=26% Similarity=0.476 Sum_probs=21.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+++|+|..|||||||++.|+|..
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 68999999999999999999974
No 396
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.63 E-value=0.006 Score=54.90 Aligned_cols=23 Identities=35% Similarity=0.433 Sum_probs=20.5
Q ss_pred CEEEEECCCCCcHHHHHHHHHcC
Q psy208 304 SRICIVGDNGAGKTTLLKIIMGI 326 (443)
Q Consensus 304 e~i~iiG~NGsGKSTLlk~l~G~ 326 (443)
-+|+|+|+.||||||+.+.|+..
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999854
No 397
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.61 E-value=0.007 Score=52.78 Aligned_cols=23 Identities=22% Similarity=0.372 Sum_probs=21.0
Q ss_pred CEEEEECCCCCcHHHHHHHHHcC
Q psy208 304 SRICIVGDNGAGKTTLLKIIMGI 326 (443)
Q Consensus 304 e~i~iiG~NGsGKSTLlk~l~G~ 326 (443)
++++|+|+.||||||+.+.|+..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999999763
No 398
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=95.60 E-value=0.0061 Score=53.62 Aligned_cols=25 Identities=44% Similarity=0.547 Sum_probs=21.8
Q ss_pred CCEEEEECCCCCcHHHHHHHHHcCC
Q psy208 303 ESRICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 303 Ge~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
.=+++|+|+.|+|||||++.+.+..
T Consensus 18 ~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 18 ELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC
Confidence 3468999999999999999998754
No 399
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=95.60 E-value=0.0064 Score=57.92 Aligned_cols=29 Identities=31% Similarity=0.574 Sum_probs=23.1
Q ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCCCc
Q psy208 304 SRICIVGDNGAGKTTLLKIIMGIISPTAG 332 (443)
Q Consensus 304 e~i~iiG~NGsGKSTLlk~l~G~~~p~~G 332 (443)
-+++|+|.+|+|||||++.|.|...+..|
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~ 128 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVG 128 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC----
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccC
Confidence 57999999999999999999997654444
No 400
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=95.59 E-value=0.0082 Score=53.67 Aligned_cols=23 Identities=35% Similarity=0.667 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+++|+|+.|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998764
No 401
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=95.58 E-value=0.0065 Score=54.31 Aligned_cols=25 Identities=32% Similarity=0.646 Sum_probs=22.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGIISP 329 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~~p 329 (443)
+++|+|+.|+|||||++.+.+...+
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~~~~ 46 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHKMSP 46 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSCCCG
T ss_pred EEEEECCCCCCHHHHHHHHHhcCCC
Confidence 5999999999999999999996543
No 402
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.57 E-value=0.0065 Score=55.99 Aligned_cols=23 Identities=35% Similarity=0.466 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+++|+|+.||||||+.+.|+-.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999997543
No 403
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.57 E-value=0.0062 Score=57.62 Aligned_cols=25 Identities=32% Similarity=0.307 Sum_probs=21.9
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHcC
Q psy208 302 LESRICIVGDNGAGKTTLLKIIMGI 326 (443)
Q Consensus 302 ~Ge~i~iiG~NGsGKSTLlk~l~G~ 326 (443)
++..|.|+|+.||||||+.+.|+..
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 3557999999999999999999864
No 404
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.56 E-value=0.008 Score=54.42 Aligned_cols=24 Identities=33% Similarity=0.475 Sum_probs=21.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGIIS 328 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~~ 328 (443)
+++|+|+.|+|||||++.|++...
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~~~ 37 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTDSV 37 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 689999999999999999998653
No 405
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=95.56 E-value=0.0063 Score=59.10 Aligned_cols=23 Identities=39% Similarity=0.689 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+++|+|++|+|||||++.|.|..
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~~ 31 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGVK 31 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 69999999999999999999863
No 406
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=95.56 E-value=0.0049 Score=61.72 Aligned_cols=22 Identities=32% Similarity=0.460 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGI 326 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~ 326 (443)
+++|+|++|+|||||++.|++.
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999985
No 407
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=95.55 E-value=0.0084 Score=53.45 Aligned_cols=23 Identities=30% Similarity=0.439 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+++|+|+.|+|||||++.+.+..
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999998653
No 408
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=95.54 E-value=0.0088 Score=52.20 Aligned_cols=22 Identities=36% Similarity=0.472 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGI 326 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~ 326 (443)
+++|+|+.|+|||||++.+.+.
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 409
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=95.54 E-value=0.0089 Score=52.83 Aligned_cols=23 Identities=22% Similarity=0.397 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+++|+|+.|+|||||++.+.+..
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998754
No 410
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.53 E-value=0.007 Score=54.89 Aligned_cols=23 Identities=30% Similarity=0.468 Sum_probs=20.8
Q ss_pred CEEEEECCCCCcHHHHHHHHHcC
Q psy208 304 SRICIVGDNGAGKTTLLKIIMGI 326 (443)
Q Consensus 304 e~i~iiG~NGsGKSTLlk~l~G~ 326 (443)
-+++|+|+.||||||+.+.|+..
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 46999999999999999999864
No 411
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=95.52 E-value=0.0083 Score=53.32 Aligned_cols=23 Identities=26% Similarity=0.699 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+++|+|+.|+|||||++.+.+..
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998754
No 412
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=95.50 E-value=0.0081 Score=53.81 Aligned_cols=23 Identities=26% Similarity=0.345 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+++|+|+.|+|||||++.+.+..
T Consensus 26 ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 26 KVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCcCHHHHHHHHHhCC
Confidence 58999999999999999998864
No 413
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.49 E-value=0.0085 Score=53.09 Aligned_cols=22 Identities=27% Similarity=0.539 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGI 326 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~ 326 (443)
+++|+|+.|+|||||++.+.+.
T Consensus 10 ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHcC
Confidence 6899999999999999999874
No 414
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.49 E-value=0.0064 Score=53.94 Aligned_cols=24 Identities=25% Similarity=0.375 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGIIS 328 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~~ 328 (443)
+++|+|+.|+|||||++.+.+...
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~~ 48 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDTF 48 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCcCHHHHHHHHhcCCC
Confidence 589999999999999999987553
No 415
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=95.49 E-value=0.0066 Score=57.02 Aligned_cols=23 Identities=35% Similarity=0.518 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+|+|+|+.|||||||++.|.|..
T Consensus 24 ~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 24 RIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEECTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 69999999999999999999864
No 416
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=95.48 E-value=0.0066 Score=54.06 Aligned_cols=23 Identities=30% Similarity=0.583 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+++|+|+.|+|||||++.+.+..
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999998754
No 417
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.48 E-value=0.0084 Score=54.22 Aligned_cols=23 Identities=30% Similarity=0.629 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+++|+|+.|+|||||++.+.+..
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~~ 50 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQGL 50 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 58999999999999999887643
No 418
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=95.47 E-value=0.0076 Score=53.87 Aligned_cols=23 Identities=30% Similarity=0.431 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+++|+|+.|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998754
No 419
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=95.47 E-value=0.0094 Score=52.89 Aligned_cols=23 Identities=39% Similarity=0.489 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+++|+|+.|+|||||++.+++..
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 59999999999999999998754
No 420
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=95.47 E-value=0.0087 Score=52.24 Aligned_cols=21 Identities=29% Similarity=0.491 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q psy208 305 RICIVGDNGAGKTTLLKIIMG 325 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G 325 (443)
+++|+|+.|+|||||++.+.+
T Consensus 8 ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 589999999999999999984
No 421
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=95.46 E-value=0.0074 Score=53.53 Aligned_cols=23 Identities=35% Similarity=0.541 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+++|+|+.|+|||||++.+.+..
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48999999999999999998754
No 422
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=95.46 E-value=0.0074 Score=57.16 Aligned_cols=23 Identities=26% Similarity=0.553 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+++|+|+.|||||||++.|+|..
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999864
No 423
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=95.45 E-value=0.0071 Score=54.29 Aligned_cols=23 Identities=26% Similarity=0.547 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+++|+|+.|+|||||++.+.+..
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIENK 49 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC--
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 58999999999999999998753
No 424
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=95.43 E-value=0.0055 Score=54.28 Aligned_cols=23 Identities=22% Similarity=0.342 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+++|+|+.|+|||||++.+.+..
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTSCGG
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998765
No 425
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=95.42 E-value=0.0063 Score=57.98 Aligned_cols=23 Identities=30% Similarity=0.566 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
.++|+|+.|+|||||++.|.|..
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~~ 32 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLTD 32 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999988754
No 426
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=95.42 E-value=0.01 Score=52.37 Aligned_cols=23 Identities=30% Similarity=0.410 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+++|+|+.|+|||||++.+.+-.
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~~ 44 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAGR 44 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48999999999999999998643
No 427
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.42 E-value=0.0077 Score=56.55 Aligned_cols=23 Identities=22% Similarity=0.458 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+|+|+|+.||||||+.+.|+..+
T Consensus 24 iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 24 LIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 69999999999999999997743
No 428
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.42 E-value=0.0075 Score=53.23 Aligned_cols=22 Identities=41% Similarity=0.465 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGI 326 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~ 326 (443)
+++|+|+.|+|||||++.+.+-
T Consensus 18 ~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 18 KVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999964
No 429
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=95.41 E-value=0.0042 Score=56.47 Aligned_cols=24 Identities=25% Similarity=0.473 Sum_probs=21.9
Q ss_pred CEEEEECCCCCcHHHHHHHHHcCC
Q psy208 304 SRICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 304 e~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
-+++|+|+.|+|||||++.|+|..
T Consensus 30 ~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 30 PEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp CEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCC
Confidence 369999999999999999999875
No 430
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=95.40 E-value=0.0096 Score=51.84 Aligned_cols=24 Identities=33% Similarity=0.369 Sum_probs=21.2
Q ss_pred CEEEEECCCCCcHHHHHHHHHcCC
Q psy208 304 SRICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 304 e~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
=+++|+|+.|+|||||++.+.+-.
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~~ 32 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSNT 32 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 469999999999999999998654
No 431
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=95.40 E-value=0.0075 Score=53.46 Aligned_cols=22 Identities=23% Similarity=0.486 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGI 326 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~ 326 (443)
+++|+|+.|+|||||++.+++.
T Consensus 19 ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 19 QVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999884
No 432
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=95.40 E-value=0.0062 Score=53.07 Aligned_cols=22 Identities=27% Similarity=0.569 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGI 326 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~ 326 (443)
+++|+|+.|+|||||++.+++.
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999875
No 433
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.39 E-value=0.0075 Score=55.01 Aligned_cols=22 Identities=41% Similarity=0.501 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGI 326 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~ 326 (443)
+++|+|+.||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEK 23 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999763
No 434
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.38 E-value=0.0083 Score=53.43 Aligned_cols=22 Identities=27% Similarity=0.561 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGI 326 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~ 326 (443)
+++|+|+.|+|||||++.+.+.
T Consensus 30 ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 30 KLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5999999999999999999875
No 435
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=95.36 E-value=0.0076 Score=57.56 Aligned_cols=23 Identities=35% Similarity=0.601 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+++|+|..|||||||++.|+|..
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999964
No 436
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=95.35 E-value=0.011 Score=52.28 Aligned_cols=23 Identities=30% Similarity=0.423 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+++|+|+.|+|||||++.+.+..
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~~ 46 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASGQ 46 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998643
No 437
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=95.35 E-value=0.0084 Score=53.60 Aligned_cols=23 Identities=26% Similarity=0.457 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+++|+|+.|+|||||++.+.+..
T Consensus 30 ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 30 KIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 58999999999999999998764
No 438
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=95.35 E-value=0.011 Score=52.07 Aligned_cols=23 Identities=35% Similarity=0.603 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+++|+|+.|+|||||++.+.+..
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998754
No 439
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=95.34 E-value=0.007 Score=53.20 Aligned_cols=23 Identities=39% Similarity=0.406 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+++|+|+.|+|||||++.+.+..
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~~ 45 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMNE 45 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999753
No 440
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=95.33 E-value=0.01 Score=53.81 Aligned_cols=23 Identities=39% Similarity=0.635 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+++|+|+.|+|||||++.+++..
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999864
No 441
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=95.31 E-value=0.01 Score=53.14 Aligned_cols=23 Identities=26% Similarity=0.521 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+++|+|+.|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998754
No 442
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=95.30 E-value=0.012 Score=53.20 Aligned_cols=24 Identities=25% Similarity=0.231 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGIIS 328 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~~ 328 (443)
+++|+|+.|+|||||++.+++...
T Consensus 9 ki~vvG~~~~GKTsli~~l~~~~~ 32 (214)
T 2fh5_B 9 AVLFVGLCDSGKTLLFVRLLTGQY 32 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 689999999999999999987543
No 443
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=95.29 E-value=0.0086 Score=54.98 Aligned_cols=23 Identities=22% Similarity=0.434 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+++|+|+.|+|||||++.+++..
T Consensus 31 kI~vvG~~~vGKSsLin~l~~~~ 53 (228)
T 2qu8_A 31 TIILSGAPNVGKSSFMNIVSRAN 53 (228)
T ss_dssp EEEEECSTTSSHHHHHHHHTTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999998863
No 444
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=95.28 E-value=0.0097 Score=53.82 Aligned_cols=24 Identities=33% Similarity=0.436 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGIIS 328 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~~ 328 (443)
+++|+|+.|+|||||++.+.+...
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~~~ 50 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDNKF 50 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCCC
Confidence 489999999999999999997643
No 445
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=95.27 E-value=0.0089 Score=58.11 Aligned_cols=24 Identities=38% Similarity=0.634 Sum_probs=21.8
Q ss_pred CEEEEECCCCCcHHHHHHHHHcCC
Q psy208 304 SRICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 304 e~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
-.++|+|+.|+|||||++.|.|..
T Consensus 11 g~v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 11 GYVAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 369999999999999999999964
No 446
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=95.27 E-value=0.0098 Score=53.03 Aligned_cols=23 Identities=30% Similarity=0.385 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+++|+|+.|+|||||++.+.+..
T Consensus 22 ki~~~G~~~~GKssl~~~l~~~~ 44 (201)
T 2q3h_A 22 KCVLVGDGAVGKTSLVVSYTTNG 44 (201)
T ss_dssp EEEEECSTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 59999999999999999998653
No 447
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.27 E-value=0.0088 Score=56.00 Aligned_cols=25 Identities=24% Similarity=0.278 Sum_probs=21.6
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHcC
Q psy208 302 LESRICIVGDNGAGKTTLLKIIMGI 326 (443)
Q Consensus 302 ~Ge~i~iiG~NGsGKSTLlk~l~G~ 326 (443)
++-+++|+|+.||||||+.+.|+..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~ 52 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKS 52 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4457999999999999999999753
No 448
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.24 E-value=0.0099 Score=54.42 Aligned_cols=26 Identities=23% Similarity=0.364 Sum_probs=22.3
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHcCC
Q psy208 302 LESRICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 302 ~Ge~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+|-+++|+|+.||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 35679999999999999999997643
No 449
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.24 E-value=0.013 Score=52.64 Aligned_cols=23 Identities=35% Similarity=0.589 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+++|+|+.|+|||||++.+.+..
T Consensus 22 ~i~v~G~~~~GKSsli~~l~~~~ 44 (213)
T 3cph_A 22 KILLIGDSGVGKSCLLVRFVEDK 44 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 68999999999999999998754
No 450
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.24 E-value=0.0086 Score=57.45 Aligned_cols=22 Identities=18% Similarity=0.386 Sum_probs=20.1
Q ss_pred CEEEEECCCCCcHHHHHHHHHc
Q psy208 304 SRICIVGDNGAGKTTLLKIIMG 325 (443)
Q Consensus 304 e~i~iiG~NGsGKSTLlk~l~G 325 (443)
-+|+|+|+.||||||+.+.|+.
T Consensus 76 ~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999999984
No 451
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.24 E-value=0.011 Score=53.37 Aligned_cols=23 Identities=35% Similarity=0.544 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+++|+|+.|+|||||++.+.+..
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 69999999999999999999854
No 452
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=95.23 E-value=0.0099 Score=52.71 Aligned_cols=23 Identities=30% Similarity=0.494 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+++|+|+.|+|||||++.+.+..
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~~ 45 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTKR 45 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCcHHHHHHHHHhCC
Confidence 58999999999999998887643
No 453
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=95.23 E-value=0.0093 Score=54.18 Aligned_cols=22 Identities=41% Similarity=0.761 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGI 326 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~ 326 (443)
+++|+|+.|+|||||++.+.+.
T Consensus 36 ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999874
No 454
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=95.20 E-value=0.012 Score=52.80 Aligned_cols=23 Identities=39% Similarity=0.569 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+++|+|+.|+|||||++.+.+..
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58999999999999999998754
No 455
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=95.19 E-value=0.009 Score=57.65 Aligned_cols=24 Identities=33% Similarity=0.577 Sum_probs=22.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGIIS 328 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~~ 328 (443)
+++|+|+.|||||||++.|+|...
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~~ 49 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRDF 49 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSCC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCCc
Confidence 699999999999999999999753
No 456
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=95.14 E-value=0.011 Score=54.15 Aligned_cols=22 Identities=41% Similarity=0.936 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGI 326 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~ 326 (443)
+++|+|+.|+|||||++.+.|.
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5999999999999999999974
No 457
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=95.14 E-value=0.0068 Score=53.05 Aligned_cols=23 Identities=30% Similarity=0.507 Sum_probs=9.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+++|+|+.|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~~ 32 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSEDA 32 (183)
T ss_dssp EEEEECCCCC-------------
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999998654
No 458
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=95.13 E-value=0.0098 Score=54.05 Aligned_cols=23 Identities=35% Similarity=0.534 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+++|+|+.|||||||++.|++..
T Consensus 32 ~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 32 AVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 58999999999999999988753
No 459
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=95.13 E-value=0.0098 Score=55.47 Aligned_cols=28 Identities=32% Similarity=0.341 Sum_probs=21.7
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHHcCCC
Q psy208 301 TLESRICIVGDNGAGKTTLLKIIMGIIS 328 (443)
Q Consensus 301 ~~Ge~i~iiG~NGsGKSTLlk~l~G~~~ 328 (443)
.+|-.|+|.|+.||||||+++.|+..+.
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4788999999999999999999986653
No 460
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=95.13 E-value=0.01 Score=61.09 Aligned_cols=42 Identities=21% Similarity=0.352 Sum_probs=32.8
Q ss_pred ceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCce
Q psy208 291 PILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGT 333 (443)
Q Consensus 291 ~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~ 333 (443)
.+++.+ +.+-+|++++|+|++|+|||||++.|+.......+.
T Consensus 140 r~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~~~~~~ 181 (473)
T 1sky_E 140 KVVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHNIAQEHGG 181 (473)
T ss_dssp HHHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHHHHHHTCC
T ss_pred hHHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhhhhhccCc
Confidence 355555 577899999999999999999999998765443343
No 461
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=95.06 E-value=0.014 Score=50.87 Aligned_cols=25 Identities=24% Similarity=0.504 Sum_probs=21.8
Q ss_pred CCEEEEECCCCCcHHHHHHHHHcCC
Q psy208 303 ESRICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 303 Ge~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+..+.|+||.|+|||||++.++..+
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHH
Confidence 4568999999999999999998754
No 462
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.06 E-value=0.0066 Score=58.67 Aligned_cols=25 Identities=28% Similarity=0.468 Sum_probs=18.8
Q ss_pred CCEEEEECCCCCcHHHHHHHHHcCC
Q psy208 303 ESRICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 303 Ge~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+-+|+|.|+.||||||+.+.|...+
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHH
Confidence 4579999999999999999998643
No 463
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=95.05 E-value=0.0098 Score=53.04 Aligned_cols=24 Identities=42% Similarity=0.371 Sum_probs=21.0
Q ss_pred CEEEEECCCCCcHHHHHHHHHcCC
Q psy208 304 SRICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 304 e~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
=+++|+|+.|+|||||++.+.+-.
T Consensus 30 ~ki~v~G~~~vGKSsLi~~l~~~~ 53 (192)
T 2b6h_A 30 MRILMVGLDAAGKTTILYKLKLGE 53 (192)
T ss_dssp EEEEEEESTTSSHHHHHHHHCSSC
T ss_pred cEEEEECCCCCCHHHHHHHHHhCC
Confidence 369999999999999999997643
No 464
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=95.02 E-value=0.022 Score=55.69 Aligned_cols=34 Identities=24% Similarity=0.346 Sum_probs=27.9
Q ss_pred ceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHc
Q psy208 291 PILTNVCLGATLESRICIVGDNGAGKTTLLKIIMG 325 (443)
Q Consensus 291 ~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G 325 (443)
..++...+.+ .|.-++|+|++|+|||||...|.+
T Consensus 133 ~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~ 166 (314)
T 1ko7_A 133 TSLHGVLVDV-YGVGVLITGDSGIGKSETALELIK 166 (314)
T ss_dssp EEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred eeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHh
Confidence 3556666666 677899999999999999998887
No 465
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.01 E-value=0.015 Score=51.46 Aligned_cols=23 Identities=35% Similarity=0.456 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+++|+|+.|+|||||++.+.+..
T Consensus 20 ki~v~G~~~~GKssli~~l~~~~ 42 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYANDA 42 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998753
No 466
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=94.98 E-value=0.011 Score=56.57 Aligned_cols=24 Identities=33% Similarity=0.555 Sum_probs=22.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGIIS 328 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~~ 328 (443)
+++|+|..|+|||||++.|+|...
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~~ 51 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRDF 51 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSCC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCCc
Confidence 699999999999999999999753
No 467
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=94.94 E-value=0.012 Score=55.57 Aligned_cols=23 Identities=22% Similarity=0.582 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+++|+|..|+|||||++.|.|..
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999999865
No 468
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=94.94 E-value=0.013 Score=53.99 Aligned_cols=28 Identities=21% Similarity=0.254 Sum_probs=23.9
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHHcCCC
Q psy208 301 TLESRICIVGDNGAGKTTLLKIIMGIIS 328 (443)
Q Consensus 301 ~~Ge~i~iiG~NGsGKSTLlk~l~G~~~ 328 (443)
.+|-.|+|.|+.||||||+++.|+..+.
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~ 31 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLR 31 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4688999999999999999999976554
No 469
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=94.94 E-value=0.015 Score=53.71 Aligned_cols=26 Identities=27% Similarity=0.303 Sum_probs=22.2
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHcCC
Q psy208 302 LESRICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 302 ~Ge~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
.+-+++|+|+.||||||+.+.|+..+
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34579999999999999999998643
No 470
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=94.91 E-value=0.012 Score=55.75 Aligned_cols=23 Identities=30% Similarity=0.602 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+++++|+.|+|||||++.|.|..
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999865
No 471
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.91 E-value=0.005 Score=60.17 Aligned_cols=37 Identities=16% Similarity=0.179 Sum_probs=26.5
Q ss_pred eeeeeeEEEeCC--CEEEEECCCCCcHHHHHHHHHcCCC
Q psy208 292 ILTNVCLGATLE--SRICIVGDNGAGKTTLLKIIMGIIS 328 (443)
Q Consensus 292 il~~vsl~i~~G--e~i~iiG~NGsGKSTLlk~l~G~~~ 328 (443)
+++.+.-.+..| ..+.|.||+|+|||||++.|++.+.
T Consensus 45 ~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 45 AVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp THHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 333333334444 3489999999999999999998753
No 472
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=94.90 E-value=0.013 Score=56.07 Aligned_cols=21 Identities=29% Similarity=0.457 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q psy208 305 RICIVGDNGAGKTTLLKIIMG 325 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G 325 (443)
++.|+|++||||||+.+.|+.
T Consensus 4 ~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999986
No 473
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=94.88 E-value=0.012 Score=57.21 Aligned_cols=28 Identities=32% Similarity=0.336 Sum_probs=23.7
Q ss_pred CCEEEEECCCCCcHHHHHHHHHcCCCCC
Q psy208 303 ESRICIVGDNGAGKTTLLKIIMGIISPT 330 (443)
Q Consensus 303 Ge~i~iiG~NGsGKSTLlk~l~G~~~p~ 330 (443)
+..+.|.||+|+|||||++.|++.+.+.
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~~ 64 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKKR 64 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 4568999999999999999999876443
No 474
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=94.88 E-value=0.0061 Score=55.21 Aligned_cols=23 Identities=39% Similarity=0.834 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+++|+|+.|+|||||++.|++..
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~~ 35 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDGR 35 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998654
No 475
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=94.88 E-value=0.015 Score=54.58 Aligned_cols=27 Identities=30% Similarity=0.480 Sum_probs=24.0
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHcCCC
Q psy208 302 LESRICIVGDNGAGKTTLLKIIMGIIS 328 (443)
Q Consensus 302 ~Ge~i~iiG~NGsGKSTLlk~l~G~~~ 328 (443)
+|-.|+|.|+.||||||+++.|+..+.
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999999977653
No 476
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=94.86 E-value=0.014 Score=53.08 Aligned_cols=25 Identities=28% Similarity=0.408 Sum_probs=21.9
Q ss_pred CCEEEEECCCCCcHHHHHHHHHcCC
Q psy208 303 ESRICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 303 Ge~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+-+++|+|+.||||||+.+.|+..+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4579999999999999999998743
No 477
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=94.85 E-value=0.013 Score=52.59 Aligned_cols=23 Identities=26% Similarity=0.449 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+++|+|+.|+|||||++.+.+..
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~~ 53 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTGA 53 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhhCC
Confidence 58999999999999999998754
No 478
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=94.84 E-value=0.014 Score=55.29 Aligned_cols=27 Identities=30% Similarity=0.332 Sum_probs=23.6
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHHcCC
Q psy208 301 TLESRICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 301 ~~Ge~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
.++.-+.|.||.|+|||||++.|+...
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 455679999999999999999999865
No 479
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=94.79 E-value=0.016 Score=53.33 Aligned_cols=27 Identities=33% Similarity=0.452 Sum_probs=23.9
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHcCCC
Q psy208 302 LESRICIVGDNGAGKTTLLKIIMGIIS 328 (443)
Q Consensus 302 ~Ge~i~iiG~NGsGKSTLlk~l~G~~~ 328 (443)
+|-.|+|.|+.||||||+++.|...+.
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999999987654
No 480
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=94.78 E-value=0.0058 Score=67.46 Aligned_cols=33 Identities=30% Similarity=0.368 Sum_probs=29.3
Q ss_pred eeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCC
Q psy208 296 VCLGATLESRICIVGDNGAGKTTLLKIIMGIIS 328 (443)
Q Consensus 296 vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~ 328 (443)
.++.+.++..++|+||+|+|||||.++|++...
T Consensus 504 ~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~ 536 (806)
T 1ypw_A 504 LKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ 536 (806)
T ss_dssp TCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHT
T ss_pred HhcCCCCCceeEEECCCCCCHHHHHHHHHHHhC
Confidence 366778999999999999999999999998764
No 481
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=94.75 E-value=0.018 Score=51.86 Aligned_cols=22 Identities=36% Similarity=0.472 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGI 326 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~ 326 (443)
+++|+|+.|+|||||++.+.+.
T Consensus 32 ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 32 KCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999888753
No 482
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=94.75 E-value=0.018 Score=51.98 Aligned_cols=24 Identities=21% Similarity=0.444 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGIIS 328 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~~ 328 (443)
.+.|.||.|+|||||++.++..+.
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 789999999999999999987543
No 483
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=94.70 E-value=0.0098 Score=52.46 Aligned_cols=23 Identities=30% Similarity=0.365 Sum_probs=20.4
Q ss_pred CEEEEECCCCCcHHHHHHHHHcC
Q psy208 304 SRICIVGDNGAGKTTLLKIIMGI 326 (443)
Q Consensus 304 e~i~iiG~NGsGKSTLlk~l~G~ 326 (443)
=+++|+|+.|+|||||++.+.+-
T Consensus 23 ~~i~v~G~~~~GKssli~~l~~~ 45 (189)
T 2x77_A 23 IRVLMLGLDNAGKTSILYRLHLG 45 (189)
T ss_dssp EEEEEEEETTSSHHHHHHHTCCS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 36999999999999999999653
No 484
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=94.70 E-value=0.016 Score=57.32 Aligned_cols=24 Identities=33% Similarity=0.385 Sum_probs=21.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGIIS 328 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~~ 328 (443)
+++|+||+|||||||.+.|+..+.
T Consensus 9 lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred eEEEECCCcCcHHHHHHHHHHHcC
Confidence 689999999999999999987653
No 485
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=94.69 E-value=0.0072 Score=53.91 Aligned_cols=22 Identities=23% Similarity=0.619 Sum_probs=4.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGI 326 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~ 326 (443)
+++|+|+.|+|||||++.+.+.
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5999999999999999998876
No 486
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=94.68 E-value=0.021 Score=52.00 Aligned_cols=23 Identities=35% Similarity=0.621 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+++|+|+.|+|||||++.+.+..
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998754
No 487
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=94.67 E-value=0.021 Score=51.84 Aligned_cols=22 Identities=32% Similarity=0.634 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGI 326 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~ 326 (443)
+++|+|+.|+|||||++.+.+.
T Consensus 29 ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999998875
No 488
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=94.65 E-value=0.015 Score=52.92 Aligned_cols=23 Identities=26% Similarity=0.483 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+++|+|..|+|||||++-++...
T Consensus 40 ~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 40 AFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 58999999999999998888654
No 489
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=94.64 E-value=0.014 Score=59.97 Aligned_cols=22 Identities=36% Similarity=0.593 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGI 326 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~ 326 (443)
+++|+|++|+|||||++.|+|.
T Consensus 25 ~V~lvG~~nvGKSTL~n~l~~~ 46 (456)
T 4dcu_A 25 VVAIVGRPNVGKSTIFNRIAGE 46 (456)
T ss_dssp EEEEECSSSSSHHHHHHHHEEE
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 7999999999999999999984
No 490
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=94.60 E-value=0.021 Score=51.37 Aligned_cols=23 Identities=30% Similarity=0.382 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+++|+|+.|+|||||++.+.+-.
T Consensus 11 ki~i~G~~~~GKTsli~~l~~~~ 33 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCMLICYTSNK 33 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998643
No 491
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=94.56 E-value=0.017 Score=53.72 Aligned_cols=25 Identities=28% Similarity=0.521 Sum_probs=22.4
Q ss_pred CCEEEEECCCCCcHHHHHHHHHcCC
Q psy208 303 ESRICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 303 Ge~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
|-.|+|.|..||||||+++.|+..+
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 5579999999999999999998765
No 492
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=94.55 E-value=0.017 Score=50.29 Aligned_cols=26 Identities=27% Similarity=0.425 Sum_probs=22.2
Q ss_pred CCEEEEECCCCCcHHHHHHHHHcCCC
Q psy208 303 ESRICIVGDNGAGKTTLLKIIMGIIS 328 (443)
Q Consensus 303 Ge~i~iiG~NGsGKSTLlk~l~G~~~ 328 (443)
+..+.|+||.|+|||||++.++..+.
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHH
Confidence 45688999999999999999987653
No 493
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=94.47 E-value=0.02 Score=58.14 Aligned_cols=26 Identities=27% Similarity=0.304 Sum_probs=22.9
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHHcC
Q psy208 301 TLESRICIVGDNGAGKTTLLKIIMGI 326 (443)
Q Consensus 301 ~~Ge~i~iiG~NGsGKSTLlk~l~G~ 326 (443)
.....+.|+|++||||||+.+.|+..
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 45678999999999999999999764
No 494
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=94.46 E-value=0.02 Score=56.21 Aligned_cols=23 Identities=30% Similarity=0.485 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
.++|+||+|||||||.+.|+..+
T Consensus 7 ~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 68999999999999999999765
No 495
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=94.46 E-value=0.0057 Score=57.60 Aligned_cols=32 Identities=31% Similarity=0.426 Sum_probs=24.7
Q ss_pred eeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcC
Q psy208 293 LTNVCLGATLESRICIVGDNGAGKTTLLKIIMGI 326 (443)
Q Consensus 293 l~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~ 326 (443)
+.++.+....| +.|.||.|+|||||++.|+..
T Consensus 36 ~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 36 YANLGAKIPKG--VLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp HHHHSCCCCSC--CCCBCSSCSSHHHHHHHHHHH
T ss_pred HHHCCCCCCce--EEEECCCCCcHHHHHHHHHHH
Confidence 34444444555 889999999999999999874
No 496
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=94.45 E-value=0.022 Score=52.67 Aligned_cols=29 Identities=31% Similarity=0.338 Sum_probs=25.8
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHHcCCCC
Q psy208 301 TLESRICIVGDNGAGKTTLLKIIMGIISP 329 (443)
Q Consensus 301 ~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p 329 (443)
.+|-.|+|.|+.||||||+++.|...+..
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 36889999999999999999999887765
No 497
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=94.39 E-value=0.021 Score=53.05 Aligned_cols=27 Identities=30% Similarity=0.330 Sum_probs=23.6
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHcCCC
Q psy208 302 LESRICIVGDNGAGKTTLLKIIMGIIS 328 (443)
Q Consensus 302 ~Ge~i~iiG~NGsGKSTLlk~l~G~~~ 328 (443)
+|-.|+|.|+.||||||+.+.|...+.
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 577899999999999999999986553
No 498
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=94.30 E-value=0.025 Score=55.86 Aligned_cols=27 Identities=22% Similarity=0.366 Sum_probs=23.2
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHcCCC
Q psy208 302 LESRICIVGDNGAGKTTLLKIIMGIIS 328 (443)
Q Consensus 302 ~Ge~i~iiG~NGsGKSTLlk~l~G~~~ 328 (443)
++..++|+||.|||||||...|+..+.
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHCC
Confidence 345799999999999999999997653
No 499
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=94.29 E-value=0.025 Score=54.38 Aligned_cols=25 Identities=28% Similarity=0.341 Sum_probs=22.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGIISP 329 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~~p 329 (443)
+++|+|..|+|||||++.|.|....
T Consensus 122 ~v~~vG~~nvGKSsliN~l~~~~~~ 146 (282)
T 1puj_A 122 RALIIGIPNVGKSTLINRLAKKNIA 146 (282)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSCCC
T ss_pred eEEEEecCCCchHHHHHHHhcCcee
Confidence 6899999999999999999997643
No 500
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=94.28 E-value=0.023 Score=55.63 Aligned_cols=25 Identities=28% Similarity=0.410 Sum_probs=21.8
Q ss_pred CCEEEEECCCCCcHHHHHHHHHcCC
Q psy208 303 ESRICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 303 Ge~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+..++|+||+|||||||...|+-.+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 3478999999999999999998654
Done!