RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy208
(443 letters)
>gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional.
Length = 718
Score = 401 bits (1033), Expect = e-134
Identities = 193/437 (44%), Positives = 265/437 (60%), Gaps = 45/437 (10%)
Query: 42 IPSHISVLHVEQEVVGDDTPAIDSVLECDTKRQNLLNREKTITQA--------------- 86
IP + +LHVEQEVVGDDT A+ VL D +R LL E +
Sbjct: 231 IPKNCQILHVEQEVVGDDTTALQCVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKG 290
Query: 87 INNGTADAN-MSTELTQVFAELEAIEADKAPARASVILAGLGFTPEMQKRATKHFSGGWR 145
N D + +S L +++ LE I+A A ARA+ ILAGL FTPEMQ +ATK FSGGWR
Sbjct: 291 ANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGLSFTPEMQVKATKTFSGGWR 350
Query: 146 KM--------------------------AIIWLENYLQNWPTTLLVVSHDRHFLDSVPTD 179
A++WLE YL WP T +VVSH R FL++V TD
Sbjct: 351 MRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKWPKTFIVVSHAREFLNTVVTD 410
Query: 180 IFHLHSQRIDTYRGNYEAFDKIKTEKLKNQQREIEAQRMHREHVQKFIDTFRYNANRASS 239
I HLH Q++ TY+G+Y+ F++ + E+LKNQQ+ E+ R H+Q FID FRYNA RAS
Sbjct: 411 ILHLHGQKLVTYKGDYDTFERTREEQLKNQQKAFESNERSRSHMQAFIDKFRYNAKRASL 470
Query: 240 VQSKIKQLERLPELKPIEKEVEVVLKFPDTE-LLSPPILQLSEVNFEYVPGKPIL-TNVC 297
VQS+IK L+RL + + + + +FP + PPI+ S+ +F Y PG P+L N+
Sbjct: 471 VQSRIKALDRLGHVDAVVNDPDYKFEFPTPDDRPGPPIISFSDASFGY-PGGPLLFKNLN 529
Query: 298 LGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNL 357
G L+SRI +VG NG GK+T+LK+I G + P++GT ++ FSQHHVD LD++
Sbjct: 530 FGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAKVRMAVFSQHHVDGLDLSS 589
Query: 358 RCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFL 417
+ + FPG P+++ R LG FGV+G+LALQ + +LSGGQKSRVAFA++ P+ L
Sbjct: 590 NPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIL 649
Query: 418 VLDEPTNHLDIETIEAL 434
+LDEP+NHLD++ +EAL
Sbjct: 650 LLDEPSNHLDLDAVEAL 666
>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated
ATPase domains [General function prediction only].
Length = 530
Score = 368 bits (946), Expect = e-123
Identities = 150/451 (33%), Positives = 234/451 (51%), Gaps = 44/451 (9%)
Query: 26 TLHLHLEGGMV---SGQLRIPSHISVLHVEQEVVGDDT-PAIDSVLECDTKRQNLLNREK 81
TL L + G + SG++ P + V ++ QE D +D V+E + + LL +
Sbjct: 44 TL-LKILAGELEPDSGEVTRPKGLRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELE 102
Query: 82 TITQAINNGTADANMSTELTQVFAELEAIEADKAPARASVILAGLGFTPEMQKRATKHFS 141
D + EL + EL+ + ARA L GLGF E + S
Sbjct: 103 EAYAL--LADPDDELLAELEALLEELDGWTLE---ARAEEALLGLGFPDEDRP--VSSLS 155
Query: 142 GGWRK--------------------------MAIIWLENYLQNWPTTLLVVSHDRHFLDS 175
GGWR+ +I WLE+YL+ +P T++VVSHDR+FLD+
Sbjct: 156 GGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRYPGTVIVVSHDRYFLDN 215
Query: 176 VPTDIFHLHSQRIDTYRGNYEAFDKIKTEKLKNQQREIEAQRMHREHVQKFIDTFRYNAN 235
V T I L ++ Y+GNY ++ + K E+L+ + E Q+ Q++I + A+
Sbjct: 216 VATHILELDRGKLTPYKGNYSSYLEQKAERLRQEAAAYEKQQKELAKEQEWIRRGKAAAS 275
Query: 236 RASSVQSKIKQLERL----PELKPIEKEVEVVLKFPDTELLSP-PILQLSEVNFEYVPGK 290
+A +S+IK+LE+L E +P+E+ + +FP +L+ V+ Y G+
Sbjct: 276 KAKKAKSRIKRLEKLEARLAEERPVEEGKPLAFRFPPPGKRLGKLVLEFENVSKGYDGGR 335
Query: 291 PILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHV 350
+L ++ RI IVG NGAGK+TLLK++ G + P +GT V +K GYF QH
Sbjct: 336 LLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHR- 394
Query: 351 DQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMC 410
D+LD + ++ L FP ++E R LG FG +G+ + VG LSGG+K+R+ A++
Sbjct: 395 DELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLL 454
Query: 411 MAAPNFLVLDEPTNHLDIETIEALGKAINKY 441
+ PN L+LDEPTNHLDIE++EAL +A+ +
Sbjct: 455 LQPPNLLLLDEPTNHLDIESLEALEEALLDF 485
Score = 135 bits (342), Expect = 7e-35
Identities = 65/202 (32%), Positives = 90/202 (44%), Gaps = 37/202 (18%)
Query: 274 PPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGT 333
++ L ++ Y +P+L NV L RI +VG NGAGK+TLLKI+ G + P +G
Sbjct: 1 MSMITLENLSLAY-GDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGE 59
Query: 334 RTVHRNLKFGYFSQHH------------------VDQLDMNLRCVQLLEAAFPGKPQEEY 375
T + L+ GY SQ + +L L L A + E
Sbjct: 60 VTRPKGLRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAEL 119
Query: 376 RRQ----------------LGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVL 419
L G G + V SLSGG + RVA AR + P+ L+L
Sbjct: 120 EALLEELDGWTLEARAEEALLGLGFPDEDRP--VSSLSGGWRRRVALARALLEEPDLLLL 177
Query: 420 DEPTNHLDIETIEALGKAINKY 441
DEPTNHLD+E+IE L + +Y
Sbjct: 178 DEPTNHLDLESIEWLEDYLKRY 199
Score = 71.1 bits (175), Expect = 3e-13
Identities = 33/127 (25%), Positives = 53/127 (41%), Gaps = 29/127 (22%)
Query: 104 FAELEAIEADKAPARASVILAGLGFTPEMQKRATKHFSGGWRK----MAIIW-------- 151
+ D+ RA L GFT E Q++ SGG + ++
Sbjct: 406 ELSEGFPDGDEQEVRA--YLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLL 463
Query: 152 --------------LENYLQNWPTTLLVVSHDRHFLDSVPTDIFHLHSQRIDTYRGNYEA 197
LE L ++ T+L+VSHDR+FLD V T I+ + +++ + G YE
Sbjct: 464 DEPTNHLDIESLEALEEALLDFEGTVLLVSHDRYFLDRVATRIWLVED-KVEEFEGGYED 522
Query: 198 FDKIKTE 204
+ + K E
Sbjct: 523 YLEQKKE 529
>gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein;
Provisional.
Length = 638
Score = 259 bits (663), Expect = 6e-80
Identities = 143/429 (33%), Positives = 225/429 (52%), Gaps = 37/429 (8%)
Query: 37 SGQLRIPSHISVLHVEQEVVGDDTPAIDSVLECDTK-RQNLLNREKTITQAINNGTADAN 95
G P + + V QE PA++ V++ D + RQ L + N+G A A
Sbjct: 55 GGSYTFPGNWQLAWVNQETPALPQPALEYVIDGDREYRQ--LEAQLHDANERNDGHAIAT 112
Query: 96 MSTELTQVFAELEAIEADKAPARASVILAGLGFTPEMQKRATKHFSGGWRKM-------- 147
+ +L+AI+A +RA+ +L GLGF+ E +R FSGGWR
Sbjct: 113 -------IHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMRLNLAQALI 165
Query: 148 ------------------AIIWLENYLQNWPTTLLVVSHDRHFLDSVPTDIFHLHSQRID 189
A+IWLE +L+++ TL+++SHDR FLD + I H+ Q +
Sbjct: 166 CRSDLLLLDEPTNHLDLDAVIWLEKWLKSYQGTLILISHDRDFLDPIVDKIIHIEQQSLF 225
Query: 190 TYRGNYEAFDKIKTEKLKNQQREIEAQRMHREHVQKFIDTFRYNANRASSVQSKIKQLER 249
Y GNY +F+ + +L QQ E+Q+ H+Q +ID FR A +A QS+IK LER
Sbjct: 226 EYTGNYSSFEVQRATRLAQQQAMYESQQERVAHLQSYIDRFRAKATKAKQAQSRIKMLER 285
Query: 250 LPELKPIEKEVEVVLKFPDTELLSPPILQLSEVNFEYVPGKPILTNVCLGATLESRICIV 309
+ + P + F E L P+L++ +V+ Y + IL ++ L SRI ++
Sbjct: 286 MELIAPAHVDNPFHFSFRAPESLPNPLLKMEKVSAGY-GDRIILDSIKLNLVPGSRIGLL 344
Query: 310 GDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEAAFPG 369
G NGAGK+TL+K++ G ++P +G + + +K GYF+QH ++ L + +Q L P
Sbjct: 345 GRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLGYFAQHQLEFLRADESPLQHLARLAPQ 404
Query: 370 KPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIE 429
+ +++ R LGGFG GD + SGG+K+R+ A + PN L+LDEPTNHLD++
Sbjct: 405 ELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLD 464
Query: 430 TIEALGKAI 438
+AL +A+
Sbjct: 465 MRQALTEAL 473
Score = 54.4 bits (131), Expect = 7e-08
Identities = 44/168 (26%), Positives = 71/168 (42%), Gaps = 30/168 (17%)
Query: 305 RICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQ-----------HHVD-- 351
++ +VG NG GK+TLL ++ IS G+ T N + + +Q + +D
Sbjct: 29 KVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQLAWVNQETPALPQPALEYVIDGD 88
Query: 352 ----QLDMNLRCVQ-------------LLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVG 394
QL+ L L+A + L G G S + + V
Sbjct: 89 REYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVS 148
Query: 395 SLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKYT 442
SGG + R+ A+ + + L+LDEPTNHLD++ + L K + Y
Sbjct: 149 DFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSYQ 196
Score = 47.5 bits (113), Expect = 1e-05
Identities = 48/196 (24%), Positives = 85/196 (43%), Gaps = 46/196 (23%)
Query: 106 ELEAIEADKAPARASVILA-------------GLGFTPEMQKRATKHFSGG--------- 143
+LE + AD++P + LA G GF + T+ FSGG
Sbjct: 384 QLEFLRADESPLQHLARLAPQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLAL 443
Query: 144 --WRKMAIIWLE---NYLQ------------NWPTTLLVVSHDRHFLDSVPTDIFHLHSQ 186
W++ ++ L+ N+L ++ L+VVSHDRH L S D++ +H
Sbjct: 444 IVWQRPNLLLLDEPTNHLDLDMRQALTEALIDFEGALVVVSHDRHLLRSTTDDLYLVHDG 503
Query: 187 RIDTYRGNYEAFDKIKTEKLKNQQREIEAQRMHREH-VQKFIDTFRYNANRASSVQSKIK 245
+++ + G+ E + + ++ K + + EA + + + Q D R A + Q K
Sbjct: 504 KVEPFDGDLEDYQQWLSDVQKQENQTDEAPKENNANSAQARKDQKRREAELRTQTQPLRK 563
Query: 246 QLERLPELKPIEKEVE 261
++ RL EKE+E
Sbjct: 564 EIARL------EKEME 573
>gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein;
Provisional.
Length = 530
Score = 161 bits (410), Expect = 3e-44
Identities = 119/397 (29%), Positives = 185/397 (46%), Gaps = 84/397 (21%)
Query: 99 ELTQVFAELEAIEADKAPARASVILAGLGFTPEMQKRATKHF------SGGWRKM----- 147
+L FAE++ A+ ARA +L G+G PE Q H+ + GW K+
Sbjct: 118 DLEVKFAEMDGYTAE---ARAGELLLGVGI-PEEQ-----HYGLMSEVAPGW-KLRVLLA 167
Query: 148 ----------------------AIIWLENYLQNWPTTLLVVSHDRHFLDSVPTDIFHLHS 185
I WLE+ L +T++++SHDRHFL+SV T + L
Sbjct: 168 QALFSNPDILLLDEPTNNLDINTIRWLEDVLNERNSTMIIISHDRHFLNSVCTHMADLDY 227
Query: 186 QRIDTYRGNYEAFDKIKTEKLKNQQREIEAQRMHREH---------VQKFIDTFRYNANR 236
+ Y GNY+ + T Q RE R+ ++ +Q F+ F NA++
Sbjct: 228 GELRVYPGNYDEYMTAAT-----QARE----RLLADNAKKKAQIAELQSFVSRFSANASK 278
Query: 237 ASSVQSKIKQLER--LPELKPIEKEVEVVLKFPDTELLSPPILQLSEVNFEYVPGKPILT 294
A S+ KQ+++ L E+KP + ++F + L L++ + + P+
Sbjct: 279 AKQATSRAKQIDKIKLEEVKPSSR-QNPFIRFEQDKKLHRNALEVENLTKGF-DNGPLFK 336
Query: 295 NVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQL- 353
N+ L R+ I+G+NG GKTTLL+ ++G + P +GT N GY++Q H
Sbjct: 337 NLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENANIGYYAQDHAYDFE 396
Query: 354 -DMNLRCVQLLEAAF--------PGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRV 404
D+ L F G ++ R LG S D + V LSGG+K R+
Sbjct: 397 NDLTL---------FDWMSQWRQEGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRM 447
Query: 405 AFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441
F ++ M PN LV+DEPTNH+D+E+IE+L A+ KY
Sbjct: 448 LFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY 484
Score = 61.1 bits (149), Expect = 5e-10
Identities = 52/176 (29%), Positives = 80/176 (45%), Gaps = 42/176 (23%)
Query: 305 RICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQL---DMN-LRCV 360
R ++G NG GK+T +KI+ G + P+AG ++ N + G Q DQ + L V
Sbjct: 29 RYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPNERLGKLRQ---DQFAFEEFTVLDTV 85
Query: 361 -----QLLEA--------AFPGKPQEEYRR---------QLGGFGV---SGDLAL----- 390
+L E A P +E+ + ++ G+ +G+L L
Sbjct: 86 IMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIP 145
Query: 391 --QFVGSLSG---GQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441
Q G +S G K RV A+ + P+ L+LDEPTN+LDI TI L +N+
Sbjct: 146 EEQHYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNER 201
Score = 48.3 bits (116), Expect = 6e-06
Identities = 16/47 (34%), Positives = 25/47 (53%)
Query: 152 LENYLQNWPTTLLVVSHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAF 198
L L+ + TL+ VSHDR F+ S+ T I + + + G YE +
Sbjct: 477 LNMALEKYEGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYEEY 523
>gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation
factor 3, subfamily F. Elongation factor 3 (EF-3) is a
cytosolic protein required by fungal ribosomes for in
vitro protein synthesis and for in vivo growth. EF-3
stimulates the binding of the EF-1: GTP: aa-tRNA ternary
complex to the ribosomal A site by facilitated release
of the deacylated tRNA from the E site. The reaction
requires ATP hydrolysis. EF-3 contains two ATP
nucleotide binding sequence (NBS) motifs. NBSI is
sufficient for the intrinsic ATPase activity. NBSII is
essential for the ribosome-stimulated functions.
Length = 144
Score = 138 bits (351), Expect = 1e-39
Identities = 56/165 (33%), Positives = 79/165 (47%), Gaps = 49/165 (29%)
Query: 277 LQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTV 336
++L ++ Y GK +L ++ L RI +VG NGAGK+TLLK+I G + P G T
Sbjct: 1 IELENLSKTY-GGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTW 59
Query: 337 HRNLKFGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSL 396
+K GYF Q L
Sbjct: 60 GSTVKIGYFEQ------------------------------------------------L 71
Query: 397 SGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441
SGG+K R+A A++ + PN L+LDEPTNHLD+E+IEAL +A+ +Y
Sbjct: 72 SGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEY 116
Score = 67.1 bits (165), Expect = 2e-13
Identities = 18/40 (45%), Positives = 26/40 (65%)
Query: 148 AIIWLENYLQNWPTTLLVVSHDRHFLDSVPTDIFHLHSQR 187
+I LE L+ +P T+++VSHDR+FLD V T I L +
Sbjct: 105 SIEALEEALKEYPGTVILVSHDRYFLDQVATKIIELEDGK 144
>gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family.
Members of this protein family have two copies of the
ABC transporter ATP-binding cassette, but are found
outside the common ABC transporter operon structure that
features integral membrane permease proteins and
substrate-binding proteins encoded next to the
ATP-binding cassette (ABC domain) protein. The member
protein ChvD from Agrobacterium tumefaciens was
identified as both a candidate to interact with VirB8,
based on yeast two-hybrid analysis, and as an apparent
regulator of VirG. The general function of this protein
family is unknown.
Length = 552
Score = 133 bits (338), Expect = 3e-34
Identities = 94/305 (30%), Positives = 155/305 (50%), Gaps = 34/305 (11%)
Query: 151 WLENYLQNWPTTLLVVSHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAFDKIKTEKLKNQQ 210
WLE +LQ +P T++ V+HDR+FLD+V I L R + GNY ++ + K ++L+ ++
Sbjct: 199 WLEQHLQEYPGTVVAVTHDRYFLDNVAGWILELDRGRGIPWEGNYSSWLEQKEKRLEQEE 258
Query: 211 REIEAQRMHREHVQKFIDTFRYNANRASSVQSKIK-QLERLPELKPIEKEVEVVLKFPDT 269
+E E+ R +++ ++ R + + Q+K K +L R EL E + +
Sbjct: 259 KE-ESARQKA--LKRELEWVRSSP---KARQAKSKARLARYEELLSQEFQK----RNETA 308
Query: 270 ELLSPPILQLSE--VNFEYVP----GKPILTNVCLGATLESRICIVGDNGAGKTTLLKII 323
E+ PP +L + + E + K ++ ++ + ++G NGAGK+TL ++I
Sbjct: 309 EIYIPPGPRLGDKVIEAENLSKGFGDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMI 368
Query: 324 MGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMN----------LRCVQLLEAAFPGKPQE 373
G P +GT + +K Y Q D LD N L +QL GK +
Sbjct: 369 TGQEQPDSGTIKIGETVKLAYVDQSR-DALDPNKTVWEEISGGLDIIQL------GKREV 421
Query: 374 EYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEA 433
R +G F G + VG LSGG+++RV A+ + N L+LDEPTN LD+ET+ A
Sbjct: 422 PSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRA 481
Query: 434 LGKAI 438
L +A+
Sbjct: 482 LEEAL 486
Score = 86.1 bits (214), Expect = 5e-18
Identities = 54/197 (27%), Positives = 83/197 (42%), Gaps = 42/197 (21%)
Query: 286 YVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYF 345
P K IL ++ L ++I ++G NGAGK+TLL+I+ G+ G +K GY
Sbjct: 14 VPPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGIKVGYL 73
Query: 346 SQHHVDQLDMNLRCVQLLEAAFP----------------GKPQEEY----RRQ------- 378
Q QLD + +E +P + Q
Sbjct: 74 PQE--PQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEII 131
Query: 379 --LGGFGVSGDL-----AL------QFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNH 425
+ + L AL V LSGG++ RVA R+ ++ P+ L+LDEPTNH
Sbjct: 132 DAADAWDLDRKLEIAMDALRCPPWDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNH 191
Query: 426 LDIETIEALGKAINKYT 442
LD E++ L + + +Y
Sbjct: 192 LDAESVAWLEQHLQEYP 208
Score = 42.6 bits (101), Expect = 3e-04
Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 8/71 (11%)
Query: 152 LENYLQNWPTTLLVVSHDRHFLDSVPTDI--FHLHSQRIDTYRGNYEAFDKIKTEKLKNQ 209
LE L + +V+SHDR FLD + T I F S ++ + GNY +++ K +L
Sbjct: 482 LEEALLEFAGCAVVISHDRWFLDRIATHILAFEGDSH-VEWFEGNYSEYEEDKKRRLGE- 539
Query: 210 QREIEAQRMHR 220
+A + HR
Sbjct: 540 ----DADQPHR 546
>gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed.
Length = 635
Score = 111 bits (280), Expect = 2e-26
Identities = 105/402 (26%), Positives = 180/402 (44%), Gaps = 82/402 (20%)
Query: 93 DANMSTELTQVFAELEAIEADKAPARASVILAGLGFTPEMQKRATKHFSGGW-RKMA--- 148
+ N++ EL ++ +L+ + R + +LA LG P+ + SGGW RK A
Sbjct: 114 EKNLN-ELAKLQEQLDHHNLWQLENRINEVLAQLGLDPDAALSS---LSGGWLRKAALGR 169
Query: 149 ----------------------IIWLENYLQNWPTTLLVVSHDRHFLDSVPTDIFHLHSQ 186
I WLE +L+ + +++ +SHDR F+ ++ T I L
Sbjct: 170 ALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQGSIIFISHDRSFIRNMATRIVDLDRG 229
Query: 187 RIDTYRGNYEAF-----DKIKTEKLKNQ-------QRE------IEAQRMHREHVQKFID 228
++ +Y GNY+ + + ++ E+L+N Q E I+A+R E + +
Sbjct: 230 KLVSYPGNYDQYLLEKEEALRVEELQNAEFDRKLAQEEVWIRQGIKARRTRNEGRVRALK 289
Query: 229 TFRYNANRASSVQSKIK-QLERLPELKPIEKEVEVVLKFPDTELLSPPILQLSEVNFEYV 287
R + V K Q+E + + ++ VN++ +
Sbjct: 290 ALRRERSERREVMGTAKMQVE-------------------EASRSGKIVFEMENVNYQ-I 329
Query: 288 PGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQ 347
GK ++ + +I ++G NG GKTTLLK+++G + +G L+ YF Q
Sbjct: 330 DGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHCGTKLEVAYFDQ 389
Query: 348 HHVDQLDMNLRCVQLLEAAFPGKPQE-----EYRRQLG---GFGVSGDLALQFVGSLSGG 399
H + LD + V ++ GK QE R LG F A+ V +LSGG
Sbjct: 390 HRAE-LDPE-KTV--MDNLAEGK-QEVMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGG 444
Query: 400 QKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441
+++R+ AR+ + N L+LDEPTN LD+ET+E L + ++ Y
Sbjct: 445 ERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSY 486
Score = 79.6 bits (197), Expect = 7e-16
Identities = 55/173 (31%), Positives = 76/173 (43%), Gaps = 51/173 (29%)
Query: 305 RICIVGDNGAGKTTLLKIIMG---------------IIS------PTAGTRTVHRNLKFG 343
R+C+VG NGAGK+TL+KI+ G I++ P TV +
Sbjct: 31 RVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLIVARLQQDPPRNVEGTV-----YD 85
Query: 344 YFSQ------------HHV------DQLDMNLRCVQLLEAAFP--GKPQEEYRRQ--LGG 381
+ ++ H + D + NL + L+ Q E R L
Sbjct: 86 FVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQ 145
Query: 382 FGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEAL 434
G+ D AL SLSGG + A R ++ P+ L+LDEPTNHLDIETIE L
Sbjct: 146 LGLDPDAALS---SLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWL 195
Score = 40.3 bits (95), Expect = 0.002
Identities = 34/118 (28%), Positives = 57/118 (48%), Gaps = 19/118 (16%)
Query: 152 LENYLQNWPTTLLVVSHDRHFLDSVPTD--IFHLHSQRIDTYRGNYEAFDKIKTEKLKNQ 209
LE L ++ T+L+VSHDR F+D+ T+ IF + + I Y G Y D Q
Sbjct: 479 LEELLDSYQGTVLLVSHDRQFVDNTVTECWIFEGNGK-IGRYVGGY--HDAR-------Q 528
Query: 210 QREIEAQRMHREHVQKFIDTFRYNANRASSVQSKI-----KQLERLPE-LKPIEKEVE 261
Q+ + + + V+K + A K+ ++LE+LP+ L+ +E E+E
Sbjct: 529 QQA-QYLALKQPAVKKKEEAAAPKAETVKRSSKKLSYKLQRELEQLPQLLEDLEAEIE 585
>gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter
nucleotide-binding domain. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide-binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 157
Score = 103 bits (258), Expect = 4e-26
Identities = 49/163 (30%), Positives = 76/163 (46%), Gaps = 38/163 (23%)
Query: 278 QLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVH 337
++ ++F Y G+ L NV L + +VG NG+GK+TLL+ I G++ PT+G
Sbjct: 1 EIENLSFRY-GGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGE---- 55
Query: 338 RNLKFGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLS 397
+ + P EE RR++G +V LS
Sbjct: 56 ----------------------ILIDGKDIAKLPLEELRRRIG-----------YVPQLS 82
Query: 398 GGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINK 440
GGQ+ RVA AR + P+ L+LDEPT+ LD + E L + + +
Sbjct: 83 GGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRE 125
>gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of
iron-siderophores, vitamin B12 and hemin transporters
and related proteins. ABC transporters, involved in the
uptake of siderophores, heme, and vitamin B12, are
widely conserved in bacteria and archaea. Only very few
species lack representatives of the siderophore family
transporters. The E. coli BtuCD protein is an ABC
transporter mediating vitamin B12 uptake. The two
ATP-binding cassettes (BtuD) are in close contact with
each other, as are the two membrane-spanning subunits
(BtuC); this arrangement is distinct from that observed
for the E. coli lipid flippase MsbA. The BtuC subunits
provide 20 transmembrane helices grouped around a
translocation pathway that is closed to the cytoplasm by
a gate region, whereas the dimer arrangement of the BtuD
subunits resembles the ATP-bound form of the Rad50 DNA
repair enzyme. A prominent cytoplasmic loop of BtuC
forms the contact region with the ATP-binding cassette
and represent a conserved motif among the ABC
transporters.
Length = 180
Score = 98.7 bits (247), Expect = 2e-24
Identities = 48/181 (26%), Positives = 75/181 (41%), Gaps = 50/181 (27%)
Query: 278 QLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVH 337
++ ++ Y G+ +L ++ L + I+G NGAGK+TLLK + G++ P++G +
Sbjct: 1 EVENLSVGY-GGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLD 59
Query: 338 -RNL----------KFGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSG 386
++L K Y Q L + L
Sbjct: 60 GKDLASLSPKELARKIAYVPQ--------ALELLGLA----------------------- 88
Query: 387 DLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDI-------ETIEALGKAIN 439
LA + LSGG++ RV AR P L+LDEPT+HLDI E + L +
Sbjct: 89 HLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERG 148
Query: 440 K 440
K
Sbjct: 149 K 149
>gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the
drug resistance transporter and related proteins,
subfamily A. This family of ATP-binding proteins
belongs to a multi-subunit transporter involved in drug
resistance (BcrA and DrrA), nodulation, lipid transport,
and lantibiotic immunity. In bacteria and archaea, these
transporters usually include an ATP-binding protein and
one or two integral membrane proteins. Eukaryotic
systems of the ABCA subfamily display ABC domains that
are quite similar to this family. The ATP-binding domain
shows the highest similarity between all members of the
ABC transporter family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 173
Score = 95.2 bits (238), Expect = 5e-23
Identities = 48/173 (27%), Positives = 79/173 (45%), Gaps = 38/173 (21%)
Query: 277 LQLSEVNFEYVPGKPILTNVCLGATLE--SRICIVGDNGAGKTTLLKIIMGIISPTAGTR 334
+++ ++ Y K L ++ L T+E ++G NGAGKTTL+KII+G++ P +G
Sbjct: 1 IEVRNLSKRY-GKKTALDDISL--TVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEI 57
Query: 335 TVHRNLKFGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLG----GFGVSGDL-A 389
V G D K EE +R++G + +L
Sbjct: 58 KV-----LGK---------D-------------IKKEPEEVKRRIGYLPEEPSLYENLTV 90
Query: 390 LQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKYT 442
+ + LSGG K R+A A+ + P L+LDEPT+ LD E+ + + +
Sbjct: 91 RENL-KLSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELK 142
>gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the
metal-type transporters. This family includes
transporters involved in the uptake of various metallic
cations such as iron, manganese, and zinc. The ATPases
of this group of transporters are very similar to
members of iron-siderophore uptake family suggesting
that they share a common ancestor. The best
characterized metal-type ABC transporters are the
YfeABCD system of Y. pestis, the SitABCD system of
Salmonella enterica serovar Typhimurium, and the SitABCD
transporter of Shigella flexneri. Moreover other
uncharacterized homologs of these metal-type
transporters are mainly found in pathogens like
Haemophilus or enteroinvasive E. coli isolates.
Length = 213
Score = 95.3 bits (238), Expect = 9e-23
Identities = 50/185 (27%), Positives = 83/185 (44%), Gaps = 30/185 (16%)
Query: 278 QLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTV- 336
++ ++ Y G P+L +V + IVG NGAGK+TLLK I+G++ PT+G+ V
Sbjct: 1 EVEDLTVSY-GGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVF 59
Query: 337 -----HRNLKFGYFSQHHVDQLDMNLRCVQLL------EAAFPGKPQEEYRRQLGGFGVS 385
+ GY Q D + ++ + + + ++
Sbjct: 60 GKPLEKERKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKV------ 113
Query: 386 GDLALQFVG----------SLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALG 435
D AL+ VG LSGGQ+ RV AR + P+ L+LDEP +D +T E +
Sbjct: 114 -DEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIY 172
Query: 436 KAINK 440
+ + +
Sbjct: 173 ELLRE 177
>gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 226
Score = 94.5 bits (236), Expect = 3e-22
Identities = 55/196 (28%), Positives = 88/196 (44%), Gaps = 37/196 (18%)
Query: 276 ILQLSEVNFEYVPGK---PILTNVCLGATLESR--ICIVGDNGAGKTTLLKIIMGIISPT 330
+++L V+ Y G L +V L +E+ + IVG +G+GK+TLL ++ G+ PT
Sbjct: 1 MIELKNVSKIYGLGGEKVEALKDVNL--EIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPT 58
Query: 331 AGTRTV---------------HRNLKFGYFSQHH--VDQLDM--NLRCVQLLEAAFPGKP 371
+G + R K G+ Q+ + L + N+ L GK
Sbjct: 59 SGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENV----ELPLLIAGKS 114
Query: 372 QEEYRRQ----LGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD 427
+R L G+ L + LSGGQ+ RVA AR + P ++ DEPT +LD
Sbjct: 115 AGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLD 174
Query: 428 IET---IEALGKAINK 440
+T + L + +NK
Sbjct: 175 SKTAKEVLELLRELNK 190
>gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase
component [Defense mechanisms].
Length = 293
Score = 95.8 bits (239), Expect = 3e-22
Identities = 55/185 (29%), Positives = 86/185 (46%), Gaps = 23/185 (12%)
Query: 275 PILQLSEVNFEYVPGKPILTNVCLGATLESR--ICIVGDNGAGKTTLLKIIMGIISPTAG 332
++++ + +Y K L V +E ++G NGAGKTTLLKI+ G++ PT+G
Sbjct: 3 EVIEVRNLTKKYGGDKTALDGVSF--EVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSG 60
Query: 333 TRTV--------HRNLK--FGYFSQHHVDQLDMNLRCVQLLE--AAF---PGKPQEEYRR 377
V ++ GY Q L L + LE A + EE
Sbjct: 61 EILVLGYDVVKEPAKVRRRIGYVPQEPS--LYPELTVRENLEFFARLYGLSKEEAEERIE 118
Query: 378 Q-LGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGK 436
+ L FG+ D A + V +LSGG K R++ A + P L+LDEPT+ LD E+ + +
Sbjct: 119 ELLELFGLE-DKANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWE 177
Query: 437 AINKY 441
+ +
Sbjct: 178 LLREL 182
>gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component
[Inorganic ion transport and metabolism].
Length = 254
Score = 95.0 bits (237), Expect = 3e-22
Identities = 50/189 (26%), Positives = 90/189 (47%), Gaps = 38/189 (20%)
Query: 273 SPPILQLSEVNFEYVPGKPILTNVCLGATLESR--ICIVGDNGAGKTTLLKIIMGIISPT 330
P++++ + Y +P+L ++ L ++E ++G NGAGK+TLLK I+G++ P+
Sbjct: 1 MMPMIEVENLTVSY-GNRPVLEDISL--SVEKGEITALIGPNGAGKSTLLKAILGLLKPS 57
Query: 331 AGT--------RTVHRNLKFGYFSQH-HVDQ------LDMNLRCVQLLEAAFPGKPQEEY 375
+G R + L+ GY Q VD+ D+ + + + + + ++
Sbjct: 58 SGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDV-VLLGRYGKKGWFRRLNKKD 116
Query: 376 RRQLGGFGVSGDLALQFVG----------SLSGGQKSRVAFARMCMAAPNFLVLDEPTNH 425
+ ++ D AL+ VG LSGGQK RV AR P+ L+LDEP
Sbjct: 117 KEKV-------DEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTG 169
Query: 426 LDIETIEAL 434
+D+ + +
Sbjct: 170 VDVAGQKEI 178
>gnl|CDD|221805 pfam12848, ABC_tran_2, ABC transporter. This domain is related to
pfam00005.
Length = 85
Score = 88.8 bits (221), Expect = 8e-22
Identities = 26/86 (30%), Positives = 53/86 (61%), Gaps = 1/86 (1%)
Query: 181 FHLHSQRIDTYRGNYEAFDKIKTEKLKNQQREIEAQRMHREHVQKFIDTFRYNANRASSV 240
L + ++ TY+GNY + + K E+L+ Q++ E Q+ + +++FID FR A++A
Sbjct: 1 LELENGKLTTYKGNYSQYLEQKEERLEQQEKAYEKQQKEIKKLEEFIDRFRAKASKAKQA 60
Query: 241 QSKIKQLERLPELKPIEKEVEVVLKF 266
QS+IK LE++ ++ ++ + ++F
Sbjct: 61 QSRIKALEKMERIEKPVEK-KPKIRF 85
>gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport
systems, ATPase components [Inorganic ion transport and
metabolism / Coenzyme metabolism].
Length = 258
Score = 91.5 bits (228), Expect = 5e-21
Identities = 51/175 (29%), Positives = 79/175 (45%), Gaps = 25/175 (14%)
Query: 275 PILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTR 334
+L++ ++F Y GKPIL ++ I+G NG+GK+TLLK + G++ P +G
Sbjct: 1 MMLEVENLSFGY-GGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEV 59
Query: 335 TVH-RNL----------KFGYFSQHHVDQLDMNLRCVQLLE-------AAFPGKPQEEYR 376
+ +++ K Y Q L +L+ F +E+
Sbjct: 60 LLDGKDIASLSPKELAKKLAYVPQSPS--APFGLTVYELVLLGRYPHLGLFGRPSKEDEE 117
Query: 377 ---RQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDI 428
L G+ LA + V LSGG++ RV AR L+LDEPT+HLDI
Sbjct: 118 IVEEALELLGLE-HLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDI 171
>gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding
cassette component of cobalt transport system. Domain I
of the ABC component of a cobalt transport family found
in bacteria, archaea, and eukaryota. The transition
metal cobalt is an essential component of many enzymes
and must be transported into cells in appropriate
amounts when needed. This ABC transport system of the
CbiMNQO family is involved in cobalt transport in
association with the cobalamin (vitamin B12)
biosynthetic pathways. Most of cobalt (Cbi) transport
systems possess a separate CbiN component, the
cobalt-binding periplasmic protein, and they are encoded
by the conserved gene cluster cbiMNQO. Both the CbiM and
CbiQ proteins are integral cytoplasmic membrane
proteins, and the CbiO protein has the linker peptide
and the Walker A and B motifs commonly found in the
ATPase components of the ABC-type transport systems.
Length = 211
Score = 90.2 bits (225), Expect = 5e-21
Identities = 58/183 (31%), Positives = 84/183 (45%), Gaps = 24/183 (13%)
Query: 278 QLSEVNFEYVPG-KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTV 336
+L ++F Y G +P L ++ L + IVG NG+GK+TLL+++ G++ PT+G V
Sbjct: 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLV 60
Query: 337 -----------HRNLKFGYFSQHHVDQLDMNLRCVQLLEAAFP----GKPQEEYRRQ--- 378
K G Q+ DQ E AF G P+EE +
Sbjct: 61 DGKDLTKLSLKELRRKVGLVFQNPDDQF-FGPTV--EEEVAFGLENLGLPEEEIEERVEE 117
Query: 379 -LGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKA 437
L G+ L + +LSGGQK RVA A + P+ L+LDEPT LD L +
Sbjct: 118 ALELVGLE-GLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLEL 176
Query: 438 INK 440
+ K
Sbjct: 177 LKK 179
Score = 28.6 bits (65), Expect = 5.6
Identities = 7/32 (21%), Positives = 15/32 (46%)
Query: 156 LQNWPTTLLVVSHDRHFLDSVPTDIFHLHSQR 187
L+ T+++V+HD L + + L +
Sbjct: 180 LKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211
>gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit. The
gene pair cydCD encodes an ABC-family transporter in
which each gene contains an N-terminal membrane-spanning
domain (pfam00664) and a C-terminal ATP-binding domain
(pfam00005). In E. coli these genes were discovered as
mutants which caused the terminal heme-copper oxidase
complex cytochrome bd to fail to assemble. Recent work
has shown that the transporter is involved in export of
redox-active thiol compounds such as cysteine and
glutathione. The linkage to assembly of the cytochrome
bd complex is further supported by the conserved operon
structure found outside the gammaproteobacteria
(cydABCD) containing both the transporter and oxidase
genes components. The genes used as the seed members for
this model are all either found in the
gammproteobacterial context or the CydABCD context. All
members of this family scoring above trusted at the time
of its creation were from genomes which encode a
cytochrome bd complex.
Length = 530
Score = 93.6 bits (233), Expect = 2e-20
Identities = 61/216 (28%), Positives = 87/216 (40%), Gaps = 37/216 (17%)
Query: 247 LERLPELKPIEKEV-EVVLKFPDTELLSPPILQLSEVNFEYVPGKPILTNVCLGATLESR 305
ER+ E+ V E L P L+L +++ Y P+L V L R
Sbjct: 304 AERIVEVLDAAGPVAEGSAPAAGAVGLGKPTLELRDLSAGYPGAPPVLDGVSLDLPPGER 363
Query: 306 ICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNL--RCVQLL 363
+ I+G +G+GK+TLL + G++ P G T+ V LD + R V +
Sbjct: 364 VAILGPSGSGKSTLLATLAGLLDPLQGEVTL---------DGVPVSSLDQDEVRRRVSVC 414
Query: 364 EA---------------AFPGKPQEEYRRQLGGFGVSGDLALQFVG----------SLSG 398
A P EE L G++ L G LSG
Sbjct: 415 AQDAHLFDTTVRENLRLARPDATDEELWAALERVGLADWLRALPDGLDTVLGEGGARLSG 474
Query: 399 GQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEAL 434
G++ R+A AR +A L+LDEPT HLD ET + L
Sbjct: 475 GERQRLALARALLADAPILLLDEPTEHLDAETADEL 510
>gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug
resistance protein-like transporters. The MRP
(Multidrug Resistance Protein)-like transporters are
involved in drug, peptide, and lipid export. They belong
to the subfamily C of the ATP-binding cassette (ABC)
superfamily of transport proteins. The ABCC subfamily
contains transporters with a diverse functional spectrum
that includes ion transport, cell surface receptor, and
toxin secretion activities. The MRP-like family, similar
to all ABC proteins, have a common four-domain core
structure constituted by two membrane-spanning domains,
each composed of six transmembrane (TM) helices, and two
nucleotide-binding domains (NBD). ABC transporters are a
subset of nucleotide hydrolases that contain a signature
motif, Q-loop, and H-loop/switch region, in addition to,
the Walker A motif/P-loop and Walker B motif commonly
found in a number of ATP- and GTP-binding and
hydrolyzing proteins.
Length = 171
Score = 87.4 bits (218), Expect = 2e-20
Identities = 49/178 (27%), Positives = 78/178 (43%), Gaps = 47/178 (26%)
Query: 277 LQLSEVNFEYVPG-KPILTNVCLGATLE--SRICIVGDNGAGKTTLLKIIMGIISPTAGT 333
++ V+F Y KP+L +V L T++ ++ IVG +G+GK+TLLK+++ + PT+G
Sbjct: 1 IEFKNVSFSYPGRPKPVLKDVSL--TIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGE 58
Query: 334 RTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQ-- 391
+ LD E R+ + Q
Sbjct: 59 ---------ILIDGVDLRDLD-----------------LESLRKNIA-------YVPQDP 85
Query: 392 --FVGS-----LSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKYT 442
F G+ LSGGQ+ R+A AR + P L+LDE T+ LD ET + +A+
Sbjct: 86 FLFSGTIRENILSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALA 143
>gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein;
Reviewed.
Length = 556
Score = 92.1 bits (230), Expect = 5e-20
Identities = 51/141 (36%), Positives = 73/141 (51%), Gaps = 17/141 (12%)
Query: 308 IVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMN----------L 357
I+G NGAGK+TL K+I G P +GT + +K Y Q D LD N L
Sbjct: 355 IIGPNGAGKSTLFKMITGQEQPDSGTIKIGETVKLAYVDQSR-DALDPNKTVWEEISGGL 413
Query: 358 RCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFL 417
+++ G + R +G F G + VG LSGG+++R+ A+ N L
Sbjct: 414 DIIKV------GNREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVL 467
Query: 418 VLDEPTNHLDIETIEALGKAI 438
+LDEPTN LD+ET+ AL +A+
Sbjct: 468 LLDEPTNDLDVETLRALEEAL 488
Score = 62.1 bits (152), Expect = 3e-10
Identities = 22/42 (52%), Positives = 30/42 (71%)
Query: 393 VGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEAL 434
V LSGG++ RVA R+ + P+ L+LDEPTNHLD E++ L
Sbjct: 161 VTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWL 202
Score = 58.6 bits (143), Expect = 3e-09
Identities = 27/74 (36%), Positives = 46/74 (62%), Gaps = 4/74 (5%)
Query: 151 WLENYLQNWPTTLLVVSHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAFDKIKTEKLKNQQ 210
WLE +L ++P T++ V+HDR+FLD+V I L R + GNY ++ + K ++L ++
Sbjct: 201 WLEQFLHDYPGTVVAVTHDRYFLDNVAGWILELDRGRGIPWEGNYSSWLEQKAKRLAQEE 260
Query: 211 REIEAQR---MHRE 221
++ EA R + RE
Sbjct: 261 KQ-EAARQKALKRE 273
Score = 49.7 bits (120), Expect = 2e-06
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 8/66 (12%)
Query: 286 YVPGKPILTNVCL----GATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLK 341
P K IL ++ L GA +I ++G NGAGK+TLL+I+ G+ G +K
Sbjct: 16 VPPKKQILKDISLSFFPGA----KIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPGIK 71
Query: 342 FGYFSQ 347
GY Q
Sbjct: 72 VGYLPQ 77
Score = 43.6 bits (104), Expect = 2e-04
Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 8/71 (11%)
Query: 152 LENYLQNWPTTLLVVSHDRHFLDSVPTDI--FHLHSQRIDTYRGNYEAFDKIKTEKLKNQ 209
LE L +P +V+SHDR FLD + T I F SQ ++ + GN++ +++ K +L
Sbjct: 484 LEEALLEFPGCAVVISHDRWFLDRIATHILAFEGDSQ-VEWFEGNFQEYEEDKKRRLGA- 541
Query: 210 QREIEAQRMHR 220
+A R HR
Sbjct: 542 ----DAARPHR 548
>gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of
PrtD, subfamily C. This family represents the ABC
component of the protease secretion system PrtD, a
60-kDa integral membrane protein sharing 37% identity
with HlyB, the ABC component of the alpha-hemolysin
secretion pathway, in the C-terminal domain. They export
degradative enzymes by using a type I protein secretion
system and lack an N-terminal signal peptide, but
contain a C-terminal secretion signal. The Type I
secretion apparatus is made up of three components, an
ABC transporter, a membrane fusion protein (MFP), and an
outer membrane protein (OMP). For the HlyA transporter
complex, HlyB (ABC transporter) and HlyD (MFP) reside in
the inner membrane of E. coli. The OMP component is
TolC, which is thought to interact with the MFP to form
a continuous channel across the periplasm from the
cytoplasm to the exterior. HlyB belongs to the family of
ABC transporters, which are ubiquitous, ATP-dependent
transmembrane pumps or channels. The spectrum of
transport substrates ranges from inorganic ions,
nutrients such as amino acids, sugars, or peptides,
hydrophobic drugs, to large polypeptides, such as HlyA.
Length = 173
Score = 85.7 bits (213), Expect = 1e-19
Identities = 59/186 (31%), Positives = 85/186 (45%), Gaps = 54/186 (29%)
Query: 259 EVE-VVLKFPDTELLSPPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKT 317
EVE V ++P E PP+L+ V+F PG+ L I+G +G+GK+
Sbjct: 2 EVENVSFRYPGAE---PPVLR--NVSFSIEPGE------SLA--------IIGPSGSGKS 42
Query: 318 TLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRR 377
TL ++I+G++ PT+G + D D++ Q E
Sbjct: 43 TLARLILGLLRPTSGRVRL--------------DGADIS----QWDP--------NELGD 76
Query: 378 QLGGFGVSGDLALQFVGS-----LSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIE 432
+G + D L F GS LSGGQ+ R+ AR P LVLDEP +HLD+E
Sbjct: 77 HVGY--LPQDDEL-FSGSIAENILSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGER 133
Query: 433 ALGKAI 438
AL +AI
Sbjct: 134 ALNQAI 139
>gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain
an N-terminal double-glycine peptidase domain [Defense
mechanisms].
Length = 709
Score = 90.8 bits (226), Expect = 2e-19
Identities = 64/240 (26%), Positives = 105/240 (43%), Gaps = 44/240 (18%)
Query: 234 ANRASSVQSKIKQ----LERLPELKPIEKEVEVVLKFPDTELLSPPILQ----LSEVNFE 285
R S + + +Q LERL ++ E E D L+ P LQ V+F
Sbjct: 426 ITRLSQLWTDFQQAKVALERLGDILDTPPEQE-----GDKTLIHLPKLQGEIEFENVSFR 480
Query: 286 YVP-GKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGT----------- 333
Y P P+L ++ L ++ IVG +G+GK+TLLK+++G+ P G
Sbjct: 481 YGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDI 540
Query: 334 --RTVHRNLKFGYFSQHHV-------DQLDM---NLRCVQLLEAAFPGKPQEEYRRQLGG 381
++ R + GY Q + + + +++EAA E G
Sbjct: 541 DLASLRRQV--GYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMG 598
Query: 382 FGVSGDLALQFVGS-LSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINK 440
+ D + G+ LSGGQ+ R+A AR ++ P L+LDE T+ LD ET + + + +
Sbjct: 599 Y----DTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQ 654
>gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the
transporters involved in export of lipoprotein and
macrolide, and cell division protein. This family is
comprised of MJ0796 ATP-binding cassette,
macrolide-specific ABC-type efflux carrier (MacAB), and
proteins involved in cell division (FtsE), and release
of lipoproteins from the cytoplasmic membrane (LolCDE).
They are clustered together phylogenetically. MacAB is
an exporter that confers resistance to macrolides, while
the LolCDE system is not a transporter at all. An FtsE
null mutants showed filamentous growth and appeared
viable on high salt medium only, indicating a role for
FtsE in cell division and/or salt transport. The LolCDE
complex catalyzes the release of lipoproteins from the
cytoplasmic membrane prior to their targeting to the
outer membrane.
Length = 218
Score = 85.2 bits (212), Expect = 4e-19
Identities = 53/179 (29%), Positives = 78/179 (43%), Gaps = 29/179 (16%)
Query: 277 LQLSEVNFEYVPGK---PILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGT 333
++L ++ Y G L V L + IVG +G+GK+TLL I+ G+ PT+G
Sbjct: 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGE 60
Query: 334 ---------------RTVHRNLKFGY-FSQHHVDQLDMNLRCVQ--LLEAAFPGKPQEEY 375
R G+ F + L +L ++ L G P++E
Sbjct: 61 VRVDGTDISKLSEKELAAFRRRHIGFVFQSFN---LLPDLTALENVELPLLLAGVPKKER 117
Query: 376 RRQ----LGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIET 430
R + L G+ GD + LSGGQ+ RVA AR P ++ DEPT +LD ET
Sbjct: 118 RERAEELLERVGL-GDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSET 175
>gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 235
Score = 85.4 bits (212), Expect = 6e-19
Identities = 55/187 (29%), Positives = 86/187 (45%), Gaps = 24/187 (12%)
Query: 275 PILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTR 334
+++ ++F Y K L +V L R+ ++G NG+GK+TLLK++ G++ PT+G
Sbjct: 2 RMIEAENLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEV 61
Query: 335 TVHRNLKFGYFSQHHVDQLDMNL------RCVQLLEA------AFP----GKPQEEYRRQ 378
V S+ + +L + QL AF G P+EE +
Sbjct: 62 LVDG---LDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEER 118
Query: 379 ----LGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEAL 434
L G+ +L + +LSGGQK RVA A + P L+LDEPT LD + L
Sbjct: 119 VAEALELVGLE-ELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRREL 177
Query: 435 GKAINKY 441
+ + K
Sbjct: 178 LELLKKL 184
>gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid
transporters, subfamily A. The ABCA subfamily mediates
the transport of a variety of lipid compounds. Mutations
of members of ABCA subfamily are associated with human
genetic diseases, such as, familial high-density
lipoprotein (HDL) deficiency, neonatal surfactant
deficiency, degenerative retinopathies, and congenital
keratinization disorders. The ABCA1 protein is involved
in disorders of cholesterol transport and high-density
lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein
transports vitamin A derivatives in the outer segments
of photoreceptor cells, and therefore, performs a
crucial step in the visual cycle. The ABCA genes are not
present in yeast. However, evolutionary studies of ABCA
genes indicate that they arose as transporters that
subsequently duplicated and that certain sets of ABCA
genes were lost in different eukaryotic lineages.
Length = 220
Score = 84.5 bits (210), Expect = 9e-19
Identities = 52/173 (30%), Positives = 81/173 (46%), Gaps = 25/173 (14%)
Query: 288 PGKPILTNVCLGATLESRI-CIVGDNGAGKTTLLKIIMGIISPTAGT------------R 334
KP + ++ L + I ++G NGAGKTT LK++ G + PT+GT +
Sbjct: 13 GTKPAVDDLSLNV-YKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRK 71
Query: 335 TVHRNLKFGYFSQHHVDQLDMNLRCVQLLE--AAFPGKPQEEYRRQ----LGGFGVSGDL 388
++L GY Q D L L + L A G P+ E + + L G D
Sbjct: 72 AARQSL--GYCPQF--DALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLG-LTDK 126
Query: 389 ALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441
A + +LSGG K +++ A + P+ L+LDEPT+ LD + A+ I +
Sbjct: 127 ANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEV 179
>gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of
bacteriocin exporters, subfamily C. Many
non-lantibiotic bacteriocins of lactic acid bacteria are
produced as precursors which have N-terminal leader
peptides that share similarities in amino acid sequence
and contain a conserved processing site of two glycine
residues in positions -1 and -2. A dedicated ATP-binding
cassette (ABC) transporter is responsible for the
proteolytic cleavage of the leader peptides and
subsequent translocation of the bacteriocins across the
cytoplasmic membrane.
Length = 220
Score = 83.4 bits (207), Expect = 2e-18
Identities = 56/200 (28%), Positives = 87/200 (43%), Gaps = 49/200 (24%)
Query: 277 LQLSEVNFEYVPGKPI--LTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGT- 333
++ V+F Y P + I L NV L ++ I+G G+GK+TLLK++ G+ PT+G+
Sbjct: 3 IEFRNVSFSY-PNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSV 61
Query: 334 ------------RTVHRNLKFGYFSQHHV-------DQLDMNLRCV---QLLEAA----- 366
+ RN+ GY Q D + + ++L AA
Sbjct: 62 LLDGTDIRQLDPADLRRNI--GYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGV 119
Query: 367 --FPGKPQEEYRRQLG--GFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEP 422
F K Q+G G G LSGGQ+ VA AR + P L+LDEP
Sbjct: 120 TDFVNKHPNGLDLQIGERGRG------------LSGGQRQAVALARALLNDPPILLLDEP 167
Query: 423 TNHLDIETIEALGKAINKYT 442
T+ +D+ + E L + + +
Sbjct: 168 TSAMDMNSEERLKERLRQLL 187
>gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding
cassette component of cobalt transport system. Domain
II of the ABC component of a cobalt transport family
found in bacteria, archaea, and eukaryota. The
transition metal cobalt is an essential component of
many enzymes and must be transported into cells in
appropriate amounts when needed. The CbiMNQO family ABC
transport system is involved in cobalt transport in
association with the cobalamin (vitamin B12)
biosynthetic pathways. Most cobalt (Cbi) transport
systems possess a separate CbiN component, the
cobalt-binding periplasmic protein, and they are encoded
by the conserved gene cluster cbiMNQO. Both the CbiM and
CbiQ proteins are integral cytoplasmic membrane
proteins, and the CbiO protein has the linker peptide
and the Walker A and B motifs commonly found in the
ATPase components of the ABC-type transport systems.
Length = 205
Score = 83.1 bits (206), Expect = 2e-18
Identities = 53/172 (30%), Positives = 83/172 (48%), Gaps = 10/172 (5%)
Query: 278 QLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVH 337
++ ++F Y G IL ++ L I + G NGAGKTTL KI+ G+I ++G+ ++
Sbjct: 1 RIENISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLN 60
Query: 338 --------RNLKFGYFSQHHVDQLDMN-LRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDL 388
R GY Q QL + +R LL E+ L + L
Sbjct: 61 GKPIKAKERRKSIGYVMQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLY-AL 119
Query: 389 ALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINK 440
+ SLSGGQK R+A A ++ + L+ DEPT+ LD + +E +G+ I +
Sbjct: 120 KERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRE 171
>gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter. ABC transporters for a large
family of proteins responsible for translocation of a
variety of compounds across biological membranes. ABC
transporters are the largest family of proteins in many
completely sequenced bacteria. ABC transporters are
composed of two copies of this domain and two copies of
a transmembrane domain pfam00664. These four domains may
belong to a single polypeptide as in human CFTR, or
belong in different polypeptide chains.
Length = 119
Score = 80.4 bits (199), Expect = 2e-18
Identities = 37/120 (30%), Positives = 53/120 (44%), Gaps = 13/120 (10%)
Query: 317 TTLLKIIMGIISPTAGTRTVH------------RNLKFGYFSQHHVDQLDMNLRCVQLLE 364
+TLLK+I G++ PT+GT + + G Q ++ +R L
Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVR-ENLFF 59
Query: 365 AAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTN 424
+ L G+ L + VG+LSGGQK RVA AR + P L+LDEPT
Sbjct: 60 GLRDKEADARAEEALERVGLPDFLDREPVGTLSGGQKQRVAIARALLKKPKLLLLDEPTA 119
Score = 31.9 bits (73), Expect = 0.22
Identities = 11/44 (25%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Query: 107 LEAIEADKAPARASVILAGLGFTPEMQKRATKHFSGGWR-KMAI 149
+ +A ARA L +G + + SGG + ++AI
Sbjct: 58 FFGLRDKEADARAEEALERVGLPDFLDREPVGTLSGGQKQRVAI 101
>gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter,
ATP-binding protein. This small clade of ABC-type
transporter ATP-binding protein components is found as a
three gene cassette along with a periplasmic
substrate-binding protein (TIGR03868) and a permease
(TIGR03869). The organisms containing this cassette are
all Actinobacteria and all contain numerous genes
requiring the coenzyme F420. This model was defined
based on five such organisms, four of which are lacking
all F420 biosynthetic capability save the final
side-chain polyglutamate attachment step (via the gene
cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and
marine actinobacterium PHSC20C1 this cassette is in an
apparent operon with the cofE gene and, in PHSC20C1,
also with a F420-dependent glucose-6-phosphate
dehydrogenase (TIGR03554). Based on these observations
we propose that this ATP-binding protein is a component
of an F420-0 (that is, F420 lacking only the
polyglutamate tail) transporter.
Length = 256
Score = 83.7 bits (207), Expect = 3e-18
Identities = 53/171 (30%), Positives = 83/171 (48%), Gaps = 21/171 (12%)
Query: 277 LQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRT- 335
L+LS V++ G+ I+ V + A S ++G NG+GK+TLL+++ G + P AGT
Sbjct: 2 LRLSRVSWS-AGGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDL 60
Query: 336 ----VH------RNLKFGYFSQHHVDQLDMNLRCVQLL-----EAAFPGKPQEEY---RR 377
+H R + Q + + +R V L + + G + R
Sbjct: 61 AGVDLHGLSRRARARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDR 120
Query: 378 QLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDI 428
L +S LA + + +LSGG++ RV AR P L+LDEPTNHLD+
Sbjct: 121 ALARTELS-HLADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDV 170
>gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase
component/photorepair protein PhrA [Inorganic ion
transport and metabolism].
Length = 257
Score = 80.8 bits (200), Expect = 3e-17
Identities = 52/191 (27%), Positives = 79/191 (41%), Gaps = 25/191 (13%)
Query: 273 SPPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTA- 331
+ P+++L V+ GK IL ++ IVG NGAGKTTLL ++ G P++
Sbjct: 28 NEPLIELKNVSVRR-NGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSG 86
Query: 332 ---------GTRTVHRNLK--FGYFS-QHHVDQLDMNLRCVQLLEAAF---PGKPQEEYR 376
G L+ G S + H ++ + F G QE+
Sbjct: 87 DVTLLGRRFGKGETIFELRKRIGLVSSELHERFRV-RETVRDVVLSGFFASIGIYQEDLT 145
Query: 377 RQ-------LGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIE 429
+ L + LA + GSLS G++ RV AR + P L+LDEP LD+
Sbjct: 146 AEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLI 205
Query: 430 TIEALGKAINK 440
E L + +
Sbjct: 206 AREQLLNRLEE 216
>gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB
family. Type I protein secretion is a system in some
Gram-negative bacteria to export proteins (often
proteases) across both inner and outer membranes to the
extracellular medium. This is one of three proteins of
the type I secretion apparatus. Targeted proteins are
not cleaved at the N-terminus, but rather carry signals
located toward the extreme C-terminus to direct type I
secretion. This model is related to models TIGR01842 and
TIGR01846, and to bacteriocin ABC transporters that
cleave their substrates during export [Protein fate,
Protein and peptide secretion and trafficking, Cellular
processes, Pathogenesis].
Length = 694
Score = 83.4 bits (207), Expect = 4e-17
Identities = 69/232 (29%), Positives = 103/232 (44%), Gaps = 65/232 (28%)
Query: 236 RASSVQSKIKQLERLPELKPIEKEVEVVLKFPDTELLSPPILQ----LSEVNFEYVPG-- 289
R ++ ++ L+ L +L P+E+ T L P LQ V+F Y PG
Sbjct: 427 RYQQAKTALQSLDELMQL-PVERP-------EGTRFLHRPRLQGEIEFRNVSFAY-PGQE 477
Query: 290 KPILTNVCLGATLE--SRICIVGDNGAGKTTLLKIIMGIISPTAGT--------RTVH-- 337
P L NV L T+ ++ I+G G+GK+TLLK+++G+ PT G+ R +
Sbjct: 478 TPALDNVSL--TIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPA 535
Query: 338 ---RNLKFGYFSQHHV-------DQLDMNLRCV---QLLEAAFPGKPQEEYRRQLGGFG- 383
RN+ GY Q D + + ++L AA +L G
Sbjct: 536 DLRRNI--GYVPQDPRLFYGTLRDNIALGAPYADDEEILRAA-----------ELAGVTE 582
Query: 384 -VSGD---LALQFVG----SLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD 427
V L +Q +G SLSGGQ+ VA AR + P L+LDEPT+ +D
Sbjct: 583 FVRRHPDGLDMQ-IGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMD 633
>gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of
the bacitracin-resistance transporter. The BcrA
subfamily represents ABC transporters involved in
peptide antibiotic resistance. Bacitracin is a
dodecapeptide antibiotic produced by B. licheniformis
and B. subtilis. The synthesis of bacitracin is
non-ribosomally catalyzed by a multi-enzyme complex
BcrABC. Bacitracin has potent antibiotic activity
against gram-positive bacteria. The inhibition of
peptidoglycan biosynthesis is the best characterized
bacterial effect of bacitracin. The bacitracin
resistance of B. licheniformis is mediated by the ABC
transporter Bcr which is composed of two identical BcrA
ATP-binding subunits and one each of the integral
membrane proteins, BcrB and BcrC. B. subtilis cells
carrying bcr genes on high-copy number plasmids develop
collateral detergent sensitivity, a similar phenomenon
in human cells with overexpressed multi-drug resistance
P-glycoprotein.
Length = 208
Score = 79.2 bits (196), Expect = 5e-17
Identities = 44/149 (29%), Positives = 63/149 (42%), Gaps = 34/149 (22%)
Query: 307 CIVGDNGAGKTTLLKIIMGIISPTAGTRTV-----HRNLK--------------FGYFSQ 347
+G NGAGKTT +KII+G+I P +G T +N++ + +
Sbjct: 30 GFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGALIEAPGFYPNLTA 89
Query: 348 HHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLG--GFGVSGDLALQFVGSLSGGQKSRVA 405
NLR L A G ++ L G S + V S G K R+
Sbjct: 90 RE------NLR----LLARLLGIRKKRIDEVLDVVGLKDSAK---KKVKGFSLGMKQRLG 136
Query: 406 FARMCMAAPNFLVLDEPTNHLDIETIEAL 434
A + P+ L+LDEPTN LD + I+ L
Sbjct: 137 IALALLGNPDLLILDEPTNGLDPDGIKEL 165
>gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 207
Score = 79.1 bits (196), Expect = 5e-17
Identities = 47/160 (29%), Positives = 73/160 (45%), Gaps = 13/160 (8%)
Query: 289 GKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQH 348
G+ + + + + + G NG+GKTTLL++I G++ P AGT + +
Sbjct: 14 GRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGT--IKLDGGDIDDPDV 71
Query: 349 --------HVDQLDMNLRCVQLLE--AAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSG 398
H + + L + LE AAF G + + L G++ L F G LS
Sbjct: 72 AEACHYLGHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAHLPF-GYLSA 130
Query: 399 GQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAI 438
GQK RVA AR+ ++ +LDEPT LD + + I
Sbjct: 131 GQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELI 170
>gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd
biosynthesis, ATPase and permease components [Energy
production and conversion / Posttranslational
modification, protein turnover, chaperones].
Length = 559
Score = 82.3 bits (204), Expect = 8e-17
Identities = 61/219 (27%), Positives = 97/219 (44%), Gaps = 31/219 (14%)
Query: 243 KIKQLERLPELKPIEKEVEVVLKFPDTELLSPPILQLSEVNFEYVPGKPILTNVCLGATL 302
K+ L P P E V P E+ L ++F Y GKP L+++ L
Sbjct: 293 KLFTLLESPVATPGSGEKAEVANEPPIEI------SLENLSFRYPDGKPALSDLNLTIKA 346
Query: 303 ESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVH----RNLK-------FGYFSQHHV- 350
+VG +GAGK+TLL +++G ++PT G V+ R+L + SQ+
Sbjct: 347 GQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYL 406
Query: 351 --DQLDMNLRCV-------QLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQK 401
+ N+ +++ A E + G V G+ LSGGQ
Sbjct: 407 FAGTIRENILLARPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGA----GLSGGQA 462
Query: 402 SRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINK 440
R+A AR ++ + L+LDEPT HLD ET + + +A+ +
Sbjct: 463 QRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQE 501
>gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system,
ATPase component [Inorganic ion transport and
metabolism].
Length = 258
Score = 79.2 bits (196), Expect = 9e-17
Identities = 49/184 (26%), Positives = 81/184 (44%), Gaps = 31/184 (16%)
Query: 275 PILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTR 334
++++ ++ Y G L +V L + I+G +GAGK+TLL+ + G++ PT+G
Sbjct: 2 MMIEVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSG-- 59
Query: 335 TVHRN----------------LKFGYFSQHH--VDQLDM--NLRCVQL-----LEAAFPG 369
+ N G Q V +L + N+ +L + F
Sbjct: 60 EILFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGL 119
Query: 370 KPQEEYRRQLGGF---GVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHL 426
+E+ + L G+ D A Q +LSGGQ+ RVA AR + P ++ DEP L
Sbjct: 120 FSKEDKAQALDALERVGIL-DKAYQRASTLSGGQQQRVAIARALVQQPKIILADEPVASL 178
Query: 427 DIET 430
D E+
Sbjct: 179 DPES 182
>gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette
domain of the molybdenum transport system. ModC is an
ABC-type transporter and the ATPase component of a
molybdate transport system that also includes the
periplasmic binding protein ModA and the membrane
protein ModB. ABC transporters are a large family of
proteins involved in the transport of a wide variety of
different compounds, like sugars, ions, peptides and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 214
Score = 77.7 bits (192), Expect = 2e-16
Identities = 48/157 (30%), Positives = 64/157 (40%), Gaps = 22/157 (14%)
Query: 303 ESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTV-HRNL--------------KFGYFSQ 347
E I G +GAGK+TLL+ I G+ P GT + L K G Q
Sbjct: 23 EEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQ 82
Query: 348 HHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQ----LGGFGVSGDLALQFVGSLSGGQKSR 403
+ L +L + L K E R L G+ L ++ LSGG+K R
Sbjct: 83 QY--ALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDH-LLNRYPAQLSGGEKQR 139
Query: 404 VAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINK 440
VA AR A P L+LDEP + LD L + +
Sbjct: 140 VALARALAAQPELLLLDEPFSALDRALRLQLLPELKQ 176
>gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport
systems, ATPase component [Amino acid transport and
metabolism].
Length = 237
Score = 78.3 bits (194), Expect = 2e-16
Identities = 51/183 (27%), Positives = 76/183 (41%), Gaps = 54/183 (29%)
Query: 275 PILQLSEVNFEYVPGK-PILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGT 333
P+L++ ++ Y GK L V L + ++G NGAGKTTLLK IMG++ P +G
Sbjct: 2 PMLEVENLSAGY--GKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGR 59
Query: 334 ---------------------------R------TVHRNLKFGYFSQHHVDQLDMNLRCV 360
R TV NL G ++ + R +
Sbjct: 60 IIFDGEDITGLPPHERARLGIAYVPEGRRIFPRLTVEENLLLGAYA---RRDKEAQERDL 116
Query: 361 QLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLD 420
+ + FP +E R Q G+LSGG++ +A AR M+ P L+LD
Sbjct: 117 EEVYELFP--RLKERRNQRA-------------GTLSGGEQQMLAIARALMSRPKLLLLD 161
Query: 421 EPT 423
EP+
Sbjct: 162 EPS 164
>gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component
[Carbohydrate transport and metabolism].
Length = 500
Score = 79.9 bits (198), Expect = 4e-16
Identities = 51/206 (24%), Positives = 76/206 (36%), Gaps = 58/206 (28%)
Query: 273 SPPILQLSEVNFEYVPGKPILTNVCLGATLES-RI-CIVGDNGAGKTTLLKIIMGIISPT 330
+PP+L+L ++ + G L V L T+ + ++G+NGAGK+TL+KI+ G+ P
Sbjct: 5 TPPLLELRGISKSF-GGVKALDGVSL--TVRPGEVHALLGENGAGKSTLMKILSGVYPPD 61
Query: 331 AGT---------------------RTVH------------RNLKFGYFSQHH---VDQLD 354
+G TVH N+ G +D+
Sbjct: 62 SGEILIDGKPVAFSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKA 121
Query: 355 MNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAP 414
M R L G+ D VG LS Q+ V AR
Sbjct: 122 MR----------------RRARELLARLGLDIDPD-TLVGDLSIAQRQMVEIARALSFDA 164
Query: 415 NFLVLDEPTNHLDIETIEALGKAINK 440
L+LDEPT L ++ E L I +
Sbjct: 165 RVLILDEPTAALTVKETERLFDLIRR 190
Score = 47.9 bits (115), Expect = 7e-06
Identities = 34/155 (21%), Positives = 56/155 (36%), Gaps = 28/155 (18%)
Query: 313 GAGKTTLLKIIMGIISPTAGT-----RTVHR-------NLKFGYFSQHHVDQ---LDMNL 357
GAG+T L + + G ++G + V Y + + LDM++
Sbjct: 295 GAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMSI 354
Query: 358 R---CVQLLEAAFPGKP------QEEYRRQLGGFGVSGDLALQFVGSLSGG--QKSRVAF 406
+ L + R + + Q +G+LSGG QK V
Sbjct: 355 AENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQK--VVL 412
Query: 407 ARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441
AR P L+LDEPT +D+ + + I +
Sbjct: 413 ARWLATDPKVLILDEPTRGIDVGAKAEIYRLIREL 447
>gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport
system, ATPase component. The biological function of
this family is not well characterized, but display ABC
domains similar to members of ABCA subfamily. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 211
Score = 75.7 bits (187), Expect = 8e-16
Identities = 55/172 (31%), Positives = 83/172 (48%), Gaps = 27/172 (15%)
Query: 277 LQLSEVNFEYVPGKPILTNVCLGATLESRIC-IVGDNGAGKTTLLKIIMGIISPTAGT-- 333
LQL + Y K L V L TL + ++G NGAGKTTL++I+ + P++GT
Sbjct: 1 LQLENLTKRY-GKKRALDGVSL--TLGPGMYGLLGPNGAGKTTLMRILATLTPPSSGTIR 57
Query: 334 ----------RTVHRNLKFGYFSQHHVDQLDMNLRCVQLLE--AAFPGKPQEEYRRQ--- 378
+ + R + GY Q + N + L+ A G P +E + +
Sbjct: 58 IDGQDVLKQPQKLRRRI--GYLPQEF--GVYPNFTVREFLDYIAWLKGIPSKEVKARVDE 113
Query: 379 -LGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIE 429
L + GD A + +GSLSGG + RV A+ + P+ L++DEPT LD E
Sbjct: 114 VLELVNL-GDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPE 164
>gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette
component of monosaccharide transport system. This
family represents the domain I of the carbohydrate
uptake proteins that transport only monosaccharides
(Monos). The Carb_Monos family is involved in the uptake
of monosaccharides, such as pentoses (such as xylose,
arabinose, and ribose) and hexoses (such as xylose,
arabinose, and ribose), that cannot be broken down to
simple sugars by hydrolysis. Pentoses include xylose,
arabinose, and ribose. Important hexoses include
glucose, galactose, and fructose. In members of the
Carb_monos family, the single hydrophobic gene product
forms a homodimer while the ABC protein represents a
fusion of two nucleotide-binding domains. However, it is
assumed that two copies of the ABC domains are present
in the assembled transporter.
Length = 163
Score = 73.6 bits (182), Expect = 2e-15
Identities = 38/134 (28%), Positives = 56/134 (41%), Gaps = 36/134 (26%)
Query: 307 CIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEAA 366
++G+NGAGK+TL+KI+ G+ P +G V G E +
Sbjct: 30 ALLGENGAGKSTLMKILSGLYKPDSGEILVD-----GK-------------------EVS 65
Query: 367 FPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHL 426
F P++ R+ G + V LS G++ V AR L+LDEPT L
Sbjct: 66 FAS-PRD--ARRAG---------IAMVYQLSVGERQMVEIARALARNARLLILDEPTAAL 113
Query: 427 DIETIEALGKAINK 440
+E L K I +
Sbjct: 114 TPAEVERLFKVIRR 127
>gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of
branched-chain amino acid transporter. LivF (TM1139) is
part of the LIV-I bacterial ABC-type two-component
transport system that imports neutral, branched-chain
amino acids. The E. coli branched-chain amino acid
transporter comprises a heterodimer of ABC transporters
(LivF and LivG), a heterodimer of six-helix TM domains
(LivM and LivH), and one of two alternative soluble
periplasmic substrate binding proteins (LivK or LivJ).
ABC transporters are a large family of proteins involved
in the transport of a wide variety of different
compounds, like sugars, ions, peptides, and more complex
organic molecules.
Length = 222
Score = 74.4 bits (184), Expect = 2e-15
Identities = 52/167 (31%), Positives = 75/167 (44%), Gaps = 27/167 (16%)
Query: 277 LQLSEVNFEYVPGK-PILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGT-- 333
L++ +N Y GK IL V L + ++G NGAGKTTLLK IMG++ P +G+
Sbjct: 1 LEVENLNAGY--GKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIR 58
Query: 334 --------RTVHRNLKFG--Y-------FSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYR 376
H + G Y F + V++ NL A K +
Sbjct: 59 FDGRDITGLPPHERARAGIGYVPEGRRIFPELTVEE---NLLLG--AYARRRAKRKARLE 113
Query: 377 RQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPT 423
R F + Q G+LSGG++ +A AR M+ P L+LDEP+
Sbjct: 114 RVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPS 160
>gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell
division and chromosome partitioning].
Length = 223
Score = 74.6 bits (184), Expect = 3e-15
Identities = 53/175 (30%), Positives = 76/175 (43%), Gaps = 23/175 (13%)
Query: 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRT 335
+++ V+ Y G+ L +V + + G +GAGK+TLLK+I G PT G
Sbjct: 1 MIRFENVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKIL 60
Query: 336 V-HRNLKFGYFSQHHVDQLDMNLRCV----QLLE-------AAFP----GKPQEEYRRQ- 378
V +L + L + V +LL A P GKP E RR+
Sbjct: 61 VNGHDL--SRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRV 118
Query: 379 ---LGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIET 430
L G+ A LSGG++ RVA AR + P L+ DEPT +LD +
Sbjct: 119 SEVLDLVGL-KHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDL 172
>gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and
permease components [Defense mechanisms].
Length = 567
Score = 77.1 bits (190), Expect = 4e-15
Identities = 52/209 (24%), Positives = 87/209 (41%), Gaps = 52/209 (24%)
Query: 267 PDTELLSPPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGI 326
PD + ++ V+F Y KP+L ++ ++ IVG +G+GK+TL+K+++ +
Sbjct: 319 PDPLKDTIGSIEFENVSFSYPGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRL 378
Query: 327 ISPTAGT-------------------------------RTVHRNLKFG--YFSQHHVDQL 353
PT+G T+ N+ G + +++
Sbjct: 379 YDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSGTIRENIALGRPDATD---EEI 435
Query: 354 DMNLRCVQLLE--AAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCM 411
+ L+ E A P Y +G GV+ LSGGQ+ R+A AR +
Sbjct: 436 EEALKLANAHEFIANLPDG----YDTIVGERGVN----------LSGGQRQRLAIARALL 481
Query: 412 AAPNFLVLDEPTNHLDIETIEALGKAINK 440
P L+LDE T+ LD ET + A+ K
Sbjct: 482 RNPPILILDEATSALDTETEALIQDALKK 510
>gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of
iron-sulfur clusters transporter, subfamily C. ATM1 is
an ABC transporter that is expressed in the
mitochondria. Although the specific function of ATM1 is
unknown, its disruption results in the accumulation of
excess mitochondrial iron, loss of mitochondrial
cytochromes, oxidative damage to mitochondrial DNA, and
decreased levels of cytosolic heme proteins. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 236
Score = 73.8 bits (182), Expect = 5e-15
Identities = 52/196 (26%), Positives = 85/196 (43%), Gaps = 46/196 (23%)
Query: 277 LQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTV 336
++ V F Y PG+P+L +V ++ IVG +G+GK+T+L+++ ++G+ +
Sbjct: 1 IEFENVTFAYDPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILI 60
Query: 337 H----RNL-------KFGYFSQHHV---DQLDMNLRC-------VQLLEAA--------- 366
R + G Q V D + N+R +++EAA
Sbjct: 61 DGQDIREVTLDSLRRAIGVVPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKI 120
Query: 367 --FPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTN 424
FP + Y +G G+ LSGG+K RVA AR + P L+LDE T+
Sbjct: 121 MRFP----DGYDTIVGERGLK----------LSGGEKQRVAIARAILKNPPILLLDEATS 166
Query: 425 HLDIETIEALGKAINK 440
LD T + A+
Sbjct: 167 ALDTHTEREIQAALRD 182
>gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of
glucan transporter and related proteins, subfamily C.
Glucan exporter ATP-binding protein. In A. tumefaciens
cyclic beta-1, 2-glucan must be transported into the
periplasmic space to exert its action as a virulence
factor. This subfamily belongs to the MRP-like family
and is involved in drug, peptide, and lipid export. The
MRP-like family, similar to all ABC proteins, have a
common four-domain core structure constituted by two
membrane-spanning domains each composed of six
transmembrane (TM) helices and two nucleotide-binding
domains (NBD). ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 229
Score = 73.0 bits (180), Expect = 8e-15
Identities = 50/192 (26%), Positives = 79/192 (41%), Gaps = 40/192 (20%)
Query: 278 QLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAG----- 332
+ VNF Y KP+L ++ + IVG GAGKTTL+ ++M P G
Sbjct: 4 EFENVNFSYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILID 63
Query: 333 -------TRTVHRNLKFGY-------FSQHHVDQLDMN---------LRCVQLLEAA-FP 368
+R R+ G FS ++ + + + + A F
Sbjct: 64 GIDIRDISRKSLRS-MIGVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFI 122
Query: 369 GKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDI 428
K Y LG G G+LS G++ +A AR + P L+LDE T+++D
Sbjct: 123 MKLPNGYDTVLGENG----------GNLSQGERQLLAIARAMLRDPKILILDEATSNIDT 172
Query: 429 ETIEALGKAINK 440
ET + + +A+ K
Sbjct: 173 ETEKLIQEALEK 184
>gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit. The
gene pair cydCD encodes an ABC-family transporter in
which each gene contains an N-terminal membrane-spanning
domain (pfam00664) and a C-terminal ATP-binding domain
(pfam00005). In E. coli these genes were discovered as
mutants which caused the terminal heme-copper oxidase
complex cytochrome bd to fail to assemble. Recent work
has shown that the transporter is involved in export of
redox-active thiol compounds such as cysteine and
glutathione. The linkage to assembly of the cytochrome
bd complex is further supported by the conserved operon
structure found outside the gammaproteobacteria
(cydABCD) containing both the transporter and oxidase
genes components. The genes used as the seed members for
this model are all either found in the
gammproteobacterial context or the CydABCD context. All
members of this family scoring above trusted at the time
of its creation were from genomes which encode a
cytochrome bd complex. Unfortunately, the gene symbol
nomenclature adopted based on this operon in B. subtilis
assigns cydC to the third gene in the operon where this
gene is actually homologous to the E. coli cydD gene. We
have chosen to name all homologs in this family in
accordance with the precedence of publication of the E.
coli name, CydD.
Length = 529
Score = 75.8 bits (187), Expect = 9e-15
Identities = 57/194 (29%), Positives = 82/194 (42%), Gaps = 30/194 (15%)
Query: 272 LSPPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTA 331
P L+ S V+ Y +P L V R+ +VG +GAGK+TLL +++G + PT
Sbjct: 317 APAPSLEFSGVSVAYPGRRPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTE 376
Query: 332 GTRTV------HRNLKF-----GYFSQHHV---DQLDMNLRCVQLLEAAFPGKPQEEYRR 377
G+ V + + QH + N+R A P E R
Sbjct: 377 GSIAVNGVPLADADADSWRDQIAWVPQHPFLFAGTIAENIRL------ARPDASDAEIRE 430
Query: 378 QLGGFGVSGDLA-----LQF-VGS----LSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD 427
L G+ +A L +G LSGGQ R+A AR + L+LDEPT HLD
Sbjct: 431 ALERAGLDEFVAALPQGLDTPIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLD 490
Query: 428 IETIEALGKAINKY 441
ET + +A+
Sbjct: 491 AETEAEVLEALRAL 504
>gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the
carbohydrate and solute transporters-like. This family
is comprised of proteins involved in the transport of
apparently unrelated solutes and proteins specific for
di- and oligosaccharides and polyols. ABC transporters
are a large family of proteins involved in the transport
of a wide variety of different compounds, like sugars,
ions, peptides and more complex organic molecules. The
nucleotide-binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 213
Score = 72.2 bits (178), Expect = 2e-14
Identities = 49/169 (28%), Positives = 72/169 (42%), Gaps = 34/169 (20%)
Query: 289 GKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAG----------TRTVHR 338
L ++ L + ++G +G GKTTLL++I G+ P +G R
Sbjct: 12 SVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPER 71
Query: 339 NLKFGYFSQH-----HVDQLDMNLRCVQLLEAAFP----GKPQEEYRRQ----LGGFGVS 385
G Q H+ + N+ AF G P+ E R + L G+
Sbjct: 72 R-NIGMVFQDYALFPHLTVAE-NI--------AFGLKLRGVPKAEIRARVRELLELVGLE 121
Query: 386 GDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEAL 434
G L ++ LSGGQ+ RVA AR P+ L+LDEP + LD + E L
Sbjct: 122 GLLN-RYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREEL 169
>gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport
system, ATPase component [Inorganic ion transport and
metabolism].
Length = 248
Score = 72.6 bits (179), Expect = 2e-14
Identities = 52/177 (29%), Positives = 76/177 (42%), Gaps = 24/177 (13%)
Query: 274 PPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGT 333
+L++ V+ + G +L ++ L + I+G +G GK+TLL++I G+ PT+G
Sbjct: 1 MALLEIEGVSKSF-GGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGE 59
Query: 334 RTVH------RNLKFGYFSQHH-------VDQLDMNLRCVQL-LEAAFPGKPQEEYR--R 377
+ GY Q V L V L LE K + R
Sbjct: 60 VLLDGRPVTGPGPDIGYVFQEDALLPWLTV------LDNVALGLELRGKSKAEARERAKE 113
Query: 378 QLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEAL 434
L G++G ++ LSGG + RVA AR P L+LDEP LD T E L
Sbjct: 114 LLELVGLAG-FEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREEL 169
>gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding
protein UrtE. Members of this protein family are ABC
transporter ATP-binding subunits associated with urea
transport and metabolism. This protein is found in a
conserved five-gene transport operon typically found
adjacent to urease genes. It was shown in Cyanobacteria
that disruption leads to the loss of high-affinity urea
transport activity [Transport and binding proteins,
Amino acids, peptides and amines].
Length = 230
Score = 72.2 bits (178), Expect = 2e-14
Identities = 51/185 (27%), Positives = 81/185 (43%), Gaps = 30/185 (16%)
Query: 277 LQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGT--- 333
L++S +N Y IL V L C++G NG GKTTLLK +MG++ +G+
Sbjct: 1 LEVSNLNVYY-GQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRL 59
Query: 334 -----------RTVHRNLKFGY-------FSQHHVDQLDMNLRCVQLLEAAFPGKPQEEY 375
+ Y F + V++ NL AA P + ++
Sbjct: 60 DGEDITKLPPHERARAGI--AYVPQGREIFPRLTVEE---NL---LTGLAALPRRSRKIP 111
Query: 376 RRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALG 435
F V ++ + G LSGGQ+ ++A AR + P L+LDEPT + I+ +G
Sbjct: 112 DEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIG 171
Query: 436 KAINK 440
+ I +
Sbjct: 172 RVIRR 176
>gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter,
ATP-binding subunit. This protein family is the
ATP-binding cassette subunit of binding
protein-dependent ABC transporter complex that strictly
co-occurs with TIGR03769. TIGRFAMs model TIGR03769
describes a protein domain that occurs singly or as one
of up to three repeats in proteins of a number of
Actinobacteria, including Propionibacterium acnes
KPA171202. The TIGR03769 domain occurs both in an
adjacent gene for the substrate-binding protein and in
additional (often nearby) proteins, often with
LPXTG-like sortase recognition signals. Homologous
ATP-binding subunits outside the scope of this family
include manganese transporter MntA in Synechocystis sp.
PCC 6803 and chelated iron transporter subunits. The
function of this transporter complex is unknown
[Transport and binding proteins, Unknown substrate].
Length = 223
Score = 71.8 bits (176), Expect = 2e-14
Identities = 50/145 (34%), Positives = 65/145 (44%), Gaps = 15/145 (10%)
Query: 306 ICIVGDNGAGKTTLLKIIMGIISPTAGTRTV------HRNLKFGYFSQHHVDQLDMNLRC 359
+ ++G NGAGKTTLL+ I+G+I P GT V GY Q H D +
Sbjct: 9 LGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISV 68
Query: 360 VQLLEAAFPGKPQEEYRRQLGGFGVSGD---------LALQFVGSLSGGQKSRVAFARMC 410
+ + G R + F D LA + VG LSGGQ+ RV AR
Sbjct: 69 AHTVMSGRTGHIGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARAL 128
Query: 411 MAAPNFLVLDEPTNHLDIETIEALG 435
P+ L+LDEP LD+ T E L
Sbjct: 129 ATRPSVLLLDEPFTGLDMPTQELLT 153
>gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the
cell division transporter. FtsE is a hydrophilic
nucleotide-binding protein that binds FtsX to form a
heterodimeric ATP-binding cassette (ABC)-type
transporter that associates with the bacterial inner
membrane. The FtsE/X transporter is thought to be
involved in cell division and is important for assembly
or stability of the septal ring.
Length = 214
Score = 71.3 bits (175), Expect = 3e-14
Identities = 55/189 (29%), Positives = 79/189 (41%), Gaps = 38/189 (20%)
Query: 281 EVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTV---- 336
V Y G L + + + + +VG +GAGK+TLLK+I PT+GT V
Sbjct: 5 NVTKTYPNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQD 64
Query: 337 ----HRNLKFGYFSQHHVDQLDMNLRCVQLL-------EAAFP----GKPQEEYRR---- 377
Y + + + + +LL AF G P E R+
Sbjct: 65 VSDLRGR-AIPYLRRK----IGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPA 119
Query: 378 ---QLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIET---I 431
+G L + LSGG++ RVA AR + +P L+ DEPT +LD +T I
Sbjct: 120 ALELVGLSHKHRALPAE----LSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEI 175
Query: 432 EALGKAINK 440
L K INK
Sbjct: 176 MNLLKKINK 184
>gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding
protein-dependent transport systems. This class is
comprised of all BPD (Binding Protein Dependent) systems
that are largely represented in archaea and eubacteria
and are primarily involved in scavenging solutes from
the environment. ABC transporters are a large family of
proteins involved in the transport of a wide variety of
different compounds, like sugars, ions, peptides, and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 178
Score = 70.3 bits (173), Expect = 3e-14
Identities = 50/177 (28%), Positives = 77/177 (43%), Gaps = 42/177 (23%)
Query: 277 LQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTV 336
L+L V+ Y K +L +V L + ++G +G+GK+TLL+ I G+ P +G+
Sbjct: 1 LELKNVSKRY-GQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGS--- 56
Query: 337 HRNLKFGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLG----------GFGVSG 386
+ L+ L RR++G V
Sbjct: 57 ------ILIDGEDLTDLEDELP---------------PLRRRIGMVFQDFALFPHLTVLE 95
Query: 387 DLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIET---IEALGKAINK 440
++AL LSGGQ+ RVA AR P+ L+LDEPT+ LD T + AL K++
Sbjct: 96 NIAL----GLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQA 148
>gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE. This
model describes FtsE, a member of the ABC transporter
ATP-binding protein family. This protein, and its
permease partner FtsX, localize to the division site. In
a number of species, the ftsEX gene pair is located next
to FtsY, the signal recognition particle-docking protein
[Cellular processes, Cell division].
Length = 214
Score = 71.1 bits (175), Expect = 4e-14
Identities = 57/190 (30%), Positives = 84/190 (44%), Gaps = 28/190 (14%)
Query: 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAG--- 332
+++ V+ Y G L +V L + + G +GAGKTTLLK++ G ++P+ G
Sbjct: 1 MIEFHNVSKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVR 60
Query: 333 ------TRTVHRNL-----KFGYFSQHHVDQLDMNLRCVQLLEAAFP----GKPQEEYRR 377
R R L + G Q D + A P GK + E +R
Sbjct: 61 IAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTV----YENVALPLEVRGKKEREIQR 116
Query: 378 QLGGFGVSGDL---ALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIET---I 431
++G L A F LSGG++ RVA AR + +P L+ DEPT +LD + I
Sbjct: 117 RVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERI 176
Query: 432 EALGKAINKY 441
L K +NK
Sbjct: 177 LDLLKRLNKR 186
>gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in
lysophospholipase L1 biosynthesis, ATPase component
[Secondary metabolites biosynthesis, transport, and
catabolism].
Length = 228
Score = 70.9 bits (174), Expect = 4e-14
Identities = 44/159 (27%), Positives = 66/159 (41%), Gaps = 20/159 (12%)
Query: 291 PILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGT----------------- 333
IL V L + IVG +G+GK+TLL ++ G+ P++G
Sbjct: 24 SILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARA 83
Query: 334 RTVHRNLKFGYFSQHHVDQLDM--NLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQ 391
R++ F + S H + L N+ L + + L G+ L
Sbjct: 84 ALRARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLT-H 142
Query: 392 FVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIET 430
+ LSGG++ RVA AR P+ L DEPT +LD T
Sbjct: 143 YPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRAT 181
>gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the
binding protein-dependent phosphonate transport system.
Phosphonates are a class of organophosphorus compounds
characterized by a chemically stable
carbon-to-phosphorus (C-P) bond. Phosphonates are
widespread among naturally occurring compounds in all
kingdoms of wildlife, but only prokaryotic
microorganisms are able to cleave this bond. Certain
bacteria such as E. coli can use alkylphosphonates as a
phosphorus source. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 241
Score = 71.1 bits (175), Expect = 4e-14
Identities = 53/183 (28%), Positives = 82/183 (44%), Gaps = 28/183 (15%)
Query: 286 YVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTV--------- 336
Y GK L +V L + ++G +GAGK+TLL+ + G++ PT+G+ +
Sbjct: 10 YPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLK 69
Query: 337 HRNL-----KFGYFSQHH--VDQLDM--NLRC-----VQLLEAAFPGKPQEEYRRQLGGF 382
+ L + G Q +++L + N+ + F P+EE +R L
Sbjct: 70 GKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAAL 129
Query: 383 GVSG--DLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALG---KA 437
G D A Q LSGGQ+ RVA AR M P ++ DEP LD + + K
Sbjct: 130 ERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKR 189
Query: 438 INK 440
IN+
Sbjct: 190 INR 192
>gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase
component [Amino acid transport and metabolism].
Length = 268
Score = 71.5 bits (176), Expect = 5e-14
Identities = 33/121 (27%), Positives = 54/121 (44%), Gaps = 22/121 (18%)
Query: 308 IVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEAAF 367
+VG++G GK+TL ++I+G+ PT+G F + +L R
Sbjct: 44 LVGESGCGKSTLGRLILGLEEPTSGEI---------LFEGKDITKLSKEER--------- 85
Query: 368 PGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD 427
+E L G+ + ++ LSGGQ+ R+ AR P +V DEP + LD
Sbjct: 86 ----RERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALD 141
Query: 428 I 428
+
Sbjct: 142 V 142
>gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit;
Provisional.
Length = 255
Score = 71.3 bits (175), Expect = 6e-14
Identities = 57/188 (30%), Positives = 77/188 (40%), Gaps = 54/188 (28%)
Query: 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIV--GDNGAGKTTLLKIIMGIISPTAGT 333
+LQ+S + +Y GKP L ++ L TLES +V G +G GKTTLL +I G + G+
Sbjct: 1 MLQISHLYADY-GGKPALEDINL--TLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGS 57
Query: 334 ---------------------------RTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEAA 366
R V N+ FG L+ A
Sbjct: 58 ITLDGKPVEGPGAERGVVFQNEGLLPWRNVQDNVAFG-------------------LQLA 98
Query: 367 FPGKPQEEY--RRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTN 424
K Q + L G+ G +++ LSGGQ+ RV AR A P L+LDEP
Sbjct: 99 GVEKMQRLEIAHQMLKKVGLEGAEK-RYIWQLSGGQRQRVGIARALAANPQLLLLDEPFG 157
Query: 425 HLDIETIE 432
LD T E
Sbjct: 158 ALDAFTRE 165
>gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter. This
model describes ABC-type bacteriocin transporter. The
amino terminal domain (pfam03412) processes the
N-terminal leader peptide from the bacteriocin while
C-terminal domains resemble ABC transporter membrane
protein and ATP-binding cassette domain. In general,
bacteriocins are agents which are responsible for
killing or inhibiting the closely related species or
even different strains of the same species. Bacteriocins
are usually encoded by bacterial plasmids. Bacteriocins
are named after the species and hence in literature one
encounters various names e.g., leucocin from Leuconostic
geldium; pedicocin from Pedicoccus acidilactici; sakacin
from Lactobacillus sake etc [Protein fate, Protein and
peptide secretion and trafficking, Protein fate, Protein
modification and repair, Transport and binding proteins,
Other].
Length = 708
Score = 73.6 bits (181), Expect = 7e-14
Identities = 55/206 (26%), Positives = 93/206 (45%), Gaps = 28/206 (13%)
Query: 248 ERLPELKPIEKEVEVVLKFPDTELLSPPILQLSEVNFEYVPGKPILTNVCLGATLESRIC 307
RL E+ ++ E K + L+ I +++V++ Y G IL+++ L + S+
Sbjct: 446 NRLNEVYLVDSEFINKKKRTELNNLNGDI-VINDVSYSYGYGSNILSDISLTIKMNSKTT 504
Query: 308 IVGDNGAGKTTLLKIIMGIISPTAGTRTV-HRNLKFGYFSQHHVDQLDMNLRCVQ----- 361
IVG +G+GK+TL K+++G +G + +LK +H + Q +N +
Sbjct: 505 IVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLK--DIDRHTLRQF-INYLPQEPYIFS 561
Query: 362 ------LLEAAFPGKPQEEYRRQLG-----------GFGVSGDLALQFVGSLSGGQKSRV 404
LL A Q+E G +L+ + S+SGGQK R+
Sbjct: 562 GSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEE-GSSISGGQKQRI 620
Query: 405 AFARMCMAAPNFLVLDEPTNHLDIET 430
A AR + L+LDE T++LD T
Sbjct: 621 ALARALLTDSKVLILDESTSNLDTIT 646
>gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase
component [Inorganic ion transport and metabolism].
Length = 345
Score = 72.0 bits (177), Expect = 7e-14
Identities = 49/141 (34%), Positives = 68/141 (48%), Gaps = 29/141 (20%)
Query: 310 GDNGAGKTTLLKIIMGIISPTAGTRTVH------------RNLKFGYFSQH-----HVDQ 352
G +GAGK+TLL+II G+ +P AG ++ R+ K G+ QH H+
Sbjct: 35 GPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPHMTV 94
Query: 353 LD-----MNLRCVQLLEAAFPGKPQEEYRR-QLGGFGVSGDLALQFVGSLSGGQKSRVAF 406
D + +R + EA + +E R QL G LA ++ LSGGQ+ RVA
Sbjct: 95 ADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEG------LADRYPAQLSGGQRQRVAL 148
Query: 407 ARMCMAAPNFLVLDEPTNHLD 427
AR P L+LDEP LD
Sbjct: 149 ARALAVEPKVLLLDEPFGALD 169
>gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to
organic solvents, ATPase component [Secondary
metabolites biosynthesis, transport, and catabolism].
Length = 263
Score = 71.1 bits (175), Expect = 8e-14
Identities = 48/177 (27%), Positives = 75/177 (42%), Gaps = 30/177 (16%)
Query: 275 PILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTR 334
P++++ V + + IL V L + I+G +G+GK+TLL++I+G++ P G
Sbjct: 7 PLIEVRGVTKSF-GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEI 65
Query: 335 TVH-RNL-------------KFGYFSQHHVDQLDMNLRCVQLLE-AAFP-----GKPQEE 374
+ ++ + G Q + + E AFP P+
Sbjct: 66 LIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVF-----ENVAFPLREHTKLPESL 120
Query: 375 YRRQ----LGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD 427
R L G+ G A + LSGG + RVA AR P L LDEPT+ LD
Sbjct: 121 IRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLD 177
>gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of
the nitrate and sulfonate transporters. NrtD and SsuB
are the ATP-binding subunits of the bacterial ABC-type
nitrate and sulfonate transport systems, respectively.
ABC transporters are a large family of proteins involved
in the transport of a wide variety of different
compounds, like sugars, ions, peptides, and more complex
organic molecules. The nucleotide binding domain shows
the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 220
Score = 69.8 bits (172), Expect = 9e-14
Identities = 46/159 (28%), Positives = 61/159 (38%), Gaps = 49/159 (30%)
Query: 306 ICIVGDNGAGKTTLLKIIMGIISPTAGT---------------------------RTVHR 338
+ +VG +G GK+TLL+II G+ PT+G TV
Sbjct: 33 VALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVFQQDALLPWLTVLD 92
Query: 339 NLKFGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQ--EEYRRQLGGFGVSGDLALQFVGSL 396
N+ G LE K + E L G+SG + L
Sbjct: 93 NVALG-------------------LELQGVPKAEARERAEELLELVGLSG-FENAYPHQL 132
Query: 397 SGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALG 435
SGG + RVA AR P+ L+LDEP + LD T E L
Sbjct: 133 SGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQ 171
>gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport
systems, contain duplicated ATPase [General function
prediction only].
Length = 539
Score = 72.6 bits (179), Expect = 9e-14
Identities = 37/142 (26%), Positives = 64/142 (45%), Gaps = 24/142 (16%)
Query: 308 IVGDNGAGKTTLLKIIMGIISPTAGTRTVH---------------RNLKFGYFSQHHVDQ 352
+VG++G+GK+TL +I+ G++ P++G+ R ++ + Q
Sbjct: 322 LVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVF--QDPYSS 379
Query: 353 LDMNLRCVQLLE---AAFPGKPQEEYRRQLGGF----GVSGDLALQFVGSLSGGQKSRVA 405
L+ + +L G E R ++ G+ + ++ LSGGQ+ RVA
Sbjct: 380 LNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVA 439
Query: 406 FARMCMAAPNFLVLDEPTNHLD 427
AR P L+LDEP + LD
Sbjct: 440 IARALALEPKLLILDEPVSALD 461
Score = 52.2 bits (126), Expect = 4e-07
Identities = 40/179 (22%), Positives = 66/179 (36%), Gaps = 41/179 (22%)
Query: 279 LSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISP--------- 329
+ +V+FE PG+ + IVG++G+GK+TL +MG++
Sbjct: 25 VRDVSFEVEPGE--------------ILGIVGESGSGKSTLALALMGLLPEGGRITSGEV 70
Query: 330 ----------TAGTRTVHRNLKFGYFSQHHVDQLD--MNLR--CVQLLEAAFPGKPQEEY 375
+ R + Q + L+ M + + L G E
Sbjct: 71 ILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEAR 130
Query: 376 RRQLGGFGVSG----DLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIET 430
+R + G + ++ LSGG + RV A P L+ DEPT LD+ T
Sbjct: 131 KRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTT 189
>gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 339
Score = 71.5 bits (176), Expect = 1e-13
Identities = 64/204 (31%), Positives = 87/204 (42%), Gaps = 54/204 (26%)
Query: 276 ILQLSEVNFEYVPGKPILTNVCLGATLE----SRICIVGDNGAGKTTLLKIIMGIISPTA 331
+++L V+ + +LE I+G +GAGK+TLL++I + PT+
Sbjct: 1 MIELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTS 60
Query: 332 GTRTVH------------RNL--KFGYFSQHHVDQLDMNL---RCVQLLEA-AFP----G 369
G+ V R L K G QH NL R V E AFP G
Sbjct: 61 GSVFVDGQDLTALSEAELRQLRQKIGMIFQH------FNLLSSRTVF--ENVAFPLELAG 112
Query: 370 KPQEEYRRQLGGFGVSGDLALQFVG----------SLSGGQKSRVAFARMCMAAPNFLVL 419
P+ E +++ V+ L+ VG LSGGQK RVA AR P L+
Sbjct: 113 VPKAEIKQR-----VAE--LLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLC 165
Query: 420 DEPTNHLDIET---IEALGKAINK 440
DE T+ LD ET I L K IN+
Sbjct: 166 DEATSALDPETTQSILELLKDINR 189
>gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed.
Length = 251
Score = 70.1 bits (172), Expect = 1e-13
Identities = 54/164 (32%), Positives = 83/164 (50%), Gaps = 20/164 (12%)
Query: 279 LSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR 338
LS+V+ E PGK ILT ++G NGAGK+TL+++++G+++P G +
Sbjct: 20 LSDVSLELKPGK-ILT-------------LLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG 65
Query: 339 NLKFGYFSQH-HVD-QLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSL 396
L+ GY Q ++D L + + L PG +E+ L +G L + L
Sbjct: 66 KLRIGYVPQKLYLDTTLPLTVNRFLRLR---PGTKKEDILPALKRVQ-AGHLIDAPMQKL 121
Query: 397 SGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINK 440
SGG+ RV AR + P LVLDEPT +D+ AL I++
Sbjct: 122 SGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQ 165
>gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of
nickel/oligopeptides specific transporters. The ABC
transporter subfamily specific for the transport of
dipeptides, oligopeptides (OppD), and nickel (NikDE).
The NikABCDE system of E. coli belongs to this family
and is composed of the periplasmic binding protein NikA,
two integral membrane components (NikB and NikC), and
two ATPase (NikD and NikE). The NikABCDE transporter is
synthesized under anaerobic conditions to meet the
increased demand for nickel resulting from hydrogenase
synthesis. The molecular mechanism of nickel uptake in
many bacteria and most archaea is not known. Many other
members of this ABC family are also involved in the
uptake of dipeptides and oligopeptides. The oligopeptide
transport system (Opp) is a five-component ABC transport
composed of a membrane-anchored substrate binding
proteins (SRP), OppA, two transmembrane proteins, OppB
and OppC, and two ATP-binding domains, OppD and OppF.
Length = 228
Score = 69.1 bits (170), Expect = 2e-13
Identities = 41/182 (22%), Positives = 77/182 (42%), Gaps = 29/182 (15%)
Query: 276 ILQLSEVNFEYVPGK---PILTNVCLGATLE--SRICIVGDNGAGKTTLLKIIMGIISPT 330
+L++ ++ + G L +V +++ + +VG++G+GK+TL + I+G++ PT
Sbjct: 1 LLEVKNLSVSFPTGGGSVKALDDVSF--SIKKGETLGLVGESGSGKSTLARAILGLLKPT 58
Query: 331 AGTRTVH--------------RNLKFGYFSQHHVDQLDMNLRC----VQLLEAAFPGKPQ 372
+G+ R + Q + L+ + + L +
Sbjct: 59 SGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKK 118
Query: 373 EEYRRQLGGFGVSGDLALQFVGS----LSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDI 428
E + + V L + + LSGGQ+ RVA AR P L+ DEPT+ LD+
Sbjct: 119 EARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALNPKLLIADEPTSALDV 178
Query: 429 ET 430
Sbjct: 179 SV 180
>gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport
system involved in resistant to organic solvents. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 235
Score = 68.7 bits (169), Expect = 3e-13
Identities = 49/168 (29%), Positives = 68/168 (40%), Gaps = 40/168 (23%)
Query: 289 GKPILTNVCL----GATLESRICIVGDNGAGKTTLLKIIMGIISPTAGT----------- 333
G+ +L V L G L I+G +G+GK+TLL++I+G++ P +G
Sbjct: 12 GRTVLKGVDLDVRRGEIL----AIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGL 67
Query: 334 ----RTVHRNLKFGYFSQHHVDQLDMNLRCVQLLE-AAFP-----GKPQEEYRRQ----L 379
R + G Q + + E AFP +EE R L
Sbjct: 68 SEAELYRLRR-RMGMLFQSGALFDSLTVF-----ENVAFPLREHTRLSEEEIREIVLEKL 121
Query: 380 GGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD 427
G+ G + LSGG K RVA AR P L+ DEPT LD
Sbjct: 122 EAVGLRGA-EDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLD 168
>gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC
transporter, PrtD family. Type I protein secretion is a
system in some Gram-negative bacteria to export proteins
(often proteases) across both inner and outer membranes
to the extracellular medium. This is one of three
proteins of the type I secretion apparatus. Targeted
proteins are not cleaved at the N-terminus, but rather
carry signals located toward the extreme C-terminus to
direct type I secretion [Protein fate, Protein and
peptide secretion and trafficking].
Length = 544
Score = 71.2 bits (175), Expect = 3e-13
Identities = 57/201 (28%), Positives = 84/201 (41%), Gaps = 44/201 (21%)
Query: 274 PPILQLSEVNFE-------YVP---GKPILTNVCLGATLESRICIVGDNGAGKTTLLKII 323
P + L E VP KP L + + I+G +G+GK+TL ++I
Sbjct: 305 DPAMPLPEPEGHLSVENVTIVPPGGKKPTLRGISFSLQAGEALAIIGPSGSGKSTLARLI 364
Query: 324 MGIISPTAGT--------RTVHRNLKFG----YFSQ----------HHVDQLDMNLRCVQ 361
+GI PT+G+ + R FG Y Q ++ + N +
Sbjct: 365 VGIWPPTSGSVRLDGADLKQWDRE-TFGKHIGYLPQDVELFPGTVAENIARFGENADPEK 423
Query: 362 LLEAAFPGKPQEEYRRQLGGF----GVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFL 417
++EAA E R G+ G G +LSGGQ+ R+A AR P +
Sbjct: 424 IIEAAKLAGVHELILRLPDGYDTVIGPGG-------ATLSGGQRQRIALARALYGDPKLV 476
Query: 418 VLDEPTNHLDIETIEALGKAI 438
VLDEP ++LD E +AL AI
Sbjct: 477 VLDEPNSNLDEEGEQALANAI 497
>gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an
uncharacterized transporter. This subgroup is related
to the subfamily A transporters involved in drug
resistance, nodulation, lipid transport, and bacteriocin
and lantibiotic immunity. In eubacteria and archaea, the
typical organization consists of one ABC and one or two
integral membranes. ABC transporters are a large family
of proteins involved in the transport of a wide variety
of different compounds, like sugars, ions, peptides and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region in addition to the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 210
Score = 68.1 bits (167), Expect = 3e-13
Identities = 45/146 (30%), Positives = 68/146 (46%), Gaps = 14/146 (9%)
Query: 308 IVGDNGAGKTTLLKIIMGIISPTAGT--------RTVHRNLKFGYFSQHHVDQLDMNLRC 359
++G NGAGKTT +++I+GII P +G RN + GY + M +
Sbjct: 31 LLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARN-RIGYLPEERGLYPKMKVID 89
Query: 360 VQLLEAAFPGKPQEEYRRQ----LGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPN 415
+ A G +EE RR+ L +S + A + V LS G + +V F + P
Sbjct: 90 QLVYLAQLKGLKKEEARRRIDEWLERLELS-EYANKRVEELSKGNQQKVQFIAAVIHDPE 148
Query: 416 FLVLDEPTNHLDIETIEALGKAINKY 441
L+LDEP + LD +E L I +
Sbjct: 149 LLILDEPFSGLDPVNVELLKDVIREL 174
>gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport
system, ATPase component [Amino acid transport and
metabolism / Inorganic ion transport and metabolism].
Length = 252
Score = 68.8 bits (169), Expect = 4e-13
Identities = 48/167 (28%), Positives = 74/167 (44%), Gaps = 32/167 (19%)
Query: 279 LSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVH- 337
L+ V+ E G+ LG IVG++G+GK+TL +++ G+ P++G+ +
Sbjct: 23 LNNVSLEIERGE------TLG--------IVGESGSGKSTLARLLAGLEKPSSGSILLDG 68
Query: 338 ---RNLKFGYFSQHHVDQL-------DMN-LRCVQ--LLEAAFP---GKPQEEYRRQLGG 381
K V Q+ +N R V L E P K Q+ L
Sbjct: 69 KPLAPKKRAKAFYRPV-QMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQ 127
Query: 382 FGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDI 428
G+ + LSGGQ+ R+A AR + P L+LDEPT+ LD+
Sbjct: 128 VGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDV 174
>gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding
protein. Phosphonates are a class of
phosphorus-containing organic compound with a stable
direct C-P bond rather than a C-O-P linkage. A number of
bacterial species have operons, typically about 14 genes
in size, with genes for ATP-dependent transport of
phosphonates, degradation, and regulation of the
expression of the system. Members of this protein family
are the ATP-binding cassette component of tripartite ABC
transporters of phosphonates [Transport and binding
proteins, Anions].
Length = 243
Score = 68.1 bits (167), Expect = 5e-13
Identities = 50/182 (27%), Positives = 85/182 (46%), Gaps = 29/182 (15%)
Query: 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRT 335
+L++ ++ Y GK L N+ L + I+G +GAGK+TLL+ I ++ P++G+
Sbjct: 1 MLEVENLSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSIL 60
Query: 336 V-HRNL-------------KFGYFSQHH--VDQLDMNLRCV-----------QLLEAAFP 368
+ ++ + G QH+ +++L + L V + L F
Sbjct: 61 LEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTV-LENVLHGRLGYKPTWRSLLGRFS 119
Query: 369 GKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDI 428
+ +E L G++ D A Q LSGGQ+ RVA AR P+ ++ DEP LD
Sbjct: 120 EEDKERALSALERVGLA-DKAYQRADQLSGGQQQRVAIARALAQQPDLILADEPIASLDP 178
Query: 429 ET 430
+T
Sbjct: 179 KT 180
>gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems,
ATPase components [Amino acid transport and metabolism].
Length = 352
Score = 69.6 bits (171), Expect = 5e-13
Identities = 46/185 (24%), Positives = 73/185 (39%), Gaps = 48/185 (25%)
Query: 273 SPPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAG 332
P L++ V+ + + ++ L + ++G +G GKTTLL++I G P++G
Sbjct: 2 PKPALEIRNVSKSF-GDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSG 60
Query: 333 T------------------------------RTVHRNLKFGYFSQHHVDQLDMNLRCVQL 362
TV N+ FG + + + ++ R +
Sbjct: 61 EILLDGEDITDVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEA 120
Query: 363 LEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEP 422
LE L GF A + LSGGQ+ RVA AR + P L+LDEP
Sbjct: 121 LE-----------LVGLEGF------ADRKPHQLSGGQQQRVALARALVPEPKVLLLDEP 163
Query: 423 TNHLD 427
+ LD
Sbjct: 164 LSALD 168
>gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport
system. The ABC transporters belonging to the YhbG
family are similar to members of the Mj1267_LivG family,
which is involved in the transport of branched-chain
amino acids. The genes yhbG and yhbN are located in a
single operon and may function together in cell envelope
during biogenesis. YhbG is the putative ATP-binding
cassette component and YhbN is the putative
periplasmic-binding protein. Depletion of each gene
product leads to growth arrest, irreversible cell damage
and loss of viability in E. coli. The YhbG homolog
(NtrA) is essential in Rhizobium meliloti, a symbiotic
nitrogen-fixing bacterium.
Length = 232
Score = 67.6 bits (166), Expect = 6e-13
Identities = 43/134 (32%), Positives = 61/134 (45%), Gaps = 27/134 (20%)
Query: 310 GDNGAGKTTLLKIIMGIISPTAG----------TRTVHR--NLKFGYFSQHH-------V 350
G NGAGKTT +I+G++ P +G +H+ L GY Q V
Sbjct: 33 GPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRKLTV 92
Query: 351 DQLDMNLRCVQLLEAAFPGKPQEEYRRQ--LGGFGVSGDLALQFVGSLSGGQKSRVAFAR 408
++ N+ V LE K + E + + L F ++ L SLSGG++ RV AR
Sbjct: 93 EE---NILAV--LEIRGLSKKEREEKLEELLEEFHIT-HLRKSKASSLSGGERRRVEIAR 146
Query: 409 MCMAAPNFLVLDEP 422
P FL+LDEP
Sbjct: 147 ALATNPKFLLLDEP 160
>gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component
of branched chain amino acids transport system. The
Mj1267/LivG ABC transporter subfamily is involved in the
transport of the hydrophobic amino acids leucine,
isoleucine and valine. MJ1267 is a branched-chain amino
acid transporter with 29% similarity to both the LivF
and LivG components of the E. coli branched-chain amino
acid transporter. MJ1267 contains an insertion from
residues 114 to 123 characteristic of LivG
(Leucine-Isoleucine-Valine) homologs. The branched-chain
amino acid transporter from E. coli comprises a
heterodimer of ABCs (LivF and LivG), a heterodimer of
six-helix TM domains (LivM and LivH), and one of two
alternative soluble periplasmic substrate binding
proteins (LivK or LivJ).
Length = 236
Score = 67.5 bits (166), Expect = 8e-13
Identities = 48/179 (26%), Positives = 67/179 (37%), Gaps = 41/179 (22%)
Query: 293 LTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGT------------------- 333
L +V ++G NGAGKTTL +I G + PT+G+
Sbjct: 16 LDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARL 75
Query: 334 ---R-----------TVHRNLKFGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQL 379
R TV N+ ++ L R + A +E L
Sbjct: 76 GIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLL--ARARREEREA-----RERAEELL 128
Query: 380 GGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAI 438
G+ DLA + G LS GQ+ R+ AR P L+LDEP L+ E E L + I
Sbjct: 129 ERVGL-ADLADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELI 186
>gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit.
This model describes the ATP binding subunit of the
multisubunit cobalt transporter in bacteria and its
equivalents in archaea. The model is restricted to ATP
subunit that is a part of the cobalt transporter, which
belongs to the ABC transporter superfamily (ATP Binding
Cassette). The model excludes ATP binding subunit that
are associated with other transporters belonging to ABC
transporter superfamily. This superfamily includes two
groups, one which catalyze the uptake of small
molecules, including ions from the external milieu and
the other group which is engaged in the efflux of small
molecular weight compounds and ions from within the
cell. Energy derived from the hydrolysis of ATP drive
the both the process of uptake and efflux [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 190
Score = 66.3 bits (162), Expect = 1e-12
Identities = 52/184 (28%), Positives = 74/184 (40%), Gaps = 44/184 (23%)
Query: 288 PGKP-ILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTV---------- 336
PG P +L + A + ++G NGAGK+TLL + G++ P +G +
Sbjct: 2 PGGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRK 61
Query: 337 ----HRNLKFGYFSQHHVDQL------------DMNLRCVQLLEAAFPGKPQEEYRRQ-- 378
R + G Q DQL +NL G + E R+
Sbjct: 62 GLLERRQ-RVGLVFQDPDDQLFAADVDQDVAFGPLNL-----------GLSEAEVERRVR 109
Query: 379 --LGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGK 436
L G SG L + LSGG+K RVA A P+ L+LDEPT LD E +
Sbjct: 110 EALTAVGASG-LRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLA 168
Query: 437 AINK 440
+ +
Sbjct: 169 ILRR 172
>gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed.
Length = 402
Score = 68.7 bits (168), Expect = 1e-12
Identities = 57/177 (32%), Positives = 82/177 (46%), Gaps = 29/177 (16%)
Query: 275 PILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTR 334
P++ +S+++ E+ +L V L S + +VG NGAGKTTLL+ I G ++PTAGT
Sbjct: 2 PMIDVSDLSVEF-GDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTV 60
Query: 335 TVH----RNLKFGYFSQH--HVDQ---LDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVS 385
V L S+ V Q L Q++E + +R + + +
Sbjct: 61 LVAGDDVEALSARAASRRVASVPQDTSLSFEFDVRQVVEMG-----RTPHRSRFDTWTET 115
Query: 386 GDLAL----------QF----VGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDI 428
A+ QF V SLSGG++ RV AR A L+LDEPT LDI
Sbjct: 116 DRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDI 172
>gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette
domain of methionine transporter. MetN (also known as
YusC) is an ABC-type transporter encoded by metN of the
metNPQ operon in Bacillus subtilis that is involved in
methionine transport. Other members of this system
include the MetP permease and the MetQ substrate binding
protein. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 233
Score = 66.5 bits (163), Expect = 2e-12
Identities = 52/171 (30%), Positives = 70/171 (40%), Gaps = 56/171 (32%)
Query: 308 IVGDNGAGKTTLLKIIMGIISPTAGTRTVH------------RNL--KFGYFSQHHVDQL 353
I+G +GAGK+TL++ I G+ PT+G+ V R + G QH
Sbjct: 36 IIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKARRRIGMIFQH----- 90
Query: 354 DMNLRCVQLLEA-------AFP----GKPQEEYRRQLGGFGVSGDLALQFVG-------- 394
LL + A P G P+ E ++ L+ VG
Sbjct: 91 ------FNLLSSRTVFENVALPLEIAGVPKAEIEERV-------LELLELVGLEDKADAY 137
Query: 395 --SLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIET---IEALGKAINK 440
LSGGQK RV AR P L+ DE T+ LD ET I AL + IN+
Sbjct: 138 PAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINR 188
>gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster
assembly, permease and ATPase components
[Posttranslational modification, protein turnover,
chaperones].
Length = 497
Score = 68.5 bits (168), Expect = 2e-12
Identities = 61/232 (26%), Positives = 96/232 (41%), Gaps = 28/232 (12%)
Query: 234 ANRASSVQSKIKQL----ERLPELKPIEKEVEVVLKFPDTELLSPPILQLSEVNFEYVPG 289
N +I+Q E++ +L +E EV P + + V+F Y P
Sbjct: 216 LNFLGFSYREIRQALTDMEKMFDLLDVEAEVSDAPDAPPLWPVRLGAVAFINVSFAYDPR 275
Query: 290 KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVH----RNLKFGYF 345
+PIL + L + IVG++GAGK+T+L+++ +G+ T+ R++
Sbjct: 276 RPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSL 335
Query: 346 -------SQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRR-----QLGGFGVSGDLALQF- 392
Q V D ++ P EE Q+ F S
Sbjct: 336 RRAIGIVPQDTVLFNDTIA---YNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTG 392
Query: 393 VGS----LSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINK 440
VG LSGG+K RVA AR + P L+LDE T+ LD T +A+ A+ +
Sbjct: 393 VGERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALRE 444
>gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 279
Score = 66.6 bits (163), Expect = 2e-12
Identities = 59/200 (29%), Positives = 87/200 (43%), Gaps = 57/200 (28%)
Query: 275 PILQLSEVNFEYVPG--KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAG 332
I+++ ++F Y P L +V + IVG NG+GK+TL K++ G++ P AG
Sbjct: 4 EIIRVEHISFRY-PDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAG 62
Query: 333 TRTV-HRNL----------KFGYFSQHHVDQL------DMNLRCVQLLEAAFP----GKP 371
T TV L + G Q+ +Q D + AF G P
Sbjct: 63 TITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQD---------DVAFGLENIGVP 113
Query: 372 QEEYRRQLGGFGVSGDLALQFVG----------SLSGGQKSRVAFARMCMAAPNFLVLDE 421
+EE ++ D AL+ VG LSGGQK RVA A + P+ ++LDE
Sbjct: 114 REEMVERV-------DQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDE 166
Query: 422 PTNHLD-------IETIEAL 434
T+ LD +ET+ L
Sbjct: 167 ATSMLDPRGRREVLETVRQL 186
>gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein
YbbL; Provisional.
Length = 225
Score = 65.5 bits (160), Expect = 4e-12
Identities = 47/187 (25%), Positives = 71/187 (37%), Gaps = 53/187 (28%)
Query: 273 SPPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAG 332
+ P+LQL V + IL N+ I G +G GK+TLLKI+ +ISPT+G
Sbjct: 4 NSPLLQLQNVGYL-AGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSG 62
Query: 333 T-------------------------------RTVHRNLKFGYFSQHHVDQLDMNLRCVQ 361
T TV+ NL F + ++
Sbjct: 63 TLLFEGEDISTLKPEIYRQQVSYCAQTPTLFGDTVYDNLIFPWQIRNQ------------ 110
Query: 362 LLEAAFPGKPQEE-YRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLD 420
+P + L F + + + + LSGG+K R++ R P L+LD
Sbjct: 111 --------QPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLD 162
Query: 421 EPTNHLD 427
E T+ LD
Sbjct: 163 EITSALD 169
>gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase
component [General function prediction only].
Length = 243
Score = 65.7 bits (161), Expect = 4e-12
Identities = 42/136 (30%), Positives = 60/136 (44%), Gaps = 29/136 (21%)
Query: 310 GDNGAGKTTLLKIIMGIISPTAGT----------RTVHR--NLKFGYFSQHH-------V 350
G NGAGKTT +I+G++ P +G +H+ L GY Q V
Sbjct: 37 GPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGIGYLPQEASIFRKLTV 96
Query: 351 DQLDMNLRCVQLLEAAFPGKPQEEYRRQLGG----FGVSGDLALQFVGSLSGGQKSRVAF 406
+ N+ V LE + E + +L F ++ L SLSGG++ RV
Sbjct: 97 ED---NIMAV--LEIREKDLKKAERKEELDALLEEFHIT-HLRDSKAYSLSGGERRRVEI 150
Query: 407 ARMCMAAPNFLVLDEP 422
AR A P F++LDEP
Sbjct: 151 ARALAANPKFILLDEP 166
>gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial
lipid flippase and related proteins, subfamily C. MsbA
is an essential ABC transporter, closely related to
eukaryotic MDR proteins. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 234
Score = 65.3 bits (160), Expect = 5e-12
Identities = 47/191 (24%), Positives = 75/191 (39%), Gaps = 45/191 (23%)
Query: 282 VNFEYVP-GKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAG-------- 332
V F Y G P+L ++ L + +VG +G+GK+TL+ +I +G
Sbjct: 6 VTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHD 65
Query: 333 -----------------------TRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEAAFPG 369
TV N+ +G ++++ R E F
Sbjct: 66 VRDYTLASLRRQIGLVSQDVFLFNDTVAENIAYGRPGATR-EEVEEAARAANAHE--FIM 122
Query: 370 KPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIE 429
+ E Y +G GV LSGGQ+ R+A AR + P L+LDE T+ LD E
Sbjct: 123 ELPEGYDTVIGERGVK----------LSGGQRQRIAIARALLKDPPILILDEATSALDTE 172
Query: 430 TIEALGKAINK 440
+ + A+ +
Sbjct: 173 SERLVQAALER 183
>gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 223
Score = 64.9 bits (158), Expect = 5e-12
Identities = 53/198 (26%), Positives = 78/198 (39%), Gaps = 51/198 (25%)
Query: 275 PILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGT- 333
+L+L +V + IL N+ L I I G +G GK+TLLKI+ +ISPT+GT
Sbjct: 2 MLLELKQVGYL-AGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTL 60
Query: 334 ------------------------------RTVHRNLKFGYFSQHHVDQLDMNLRCVQLL 363
TV NL F + Q + D + LL
Sbjct: 61 LFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTVEDNLIFPW--QIRNRRPDRA-AALDLL 117
Query: 364 EAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPT 423
R L ++ ++ LSGG+K R+A R P L+LDE T
Sbjct: 118 A-----------RFALPDSILTKNIT-----ELSGGEKQRIALIRNLQFMPKILLLDEIT 161
Query: 424 NHLDIETIEALGKAINKY 441
+ LD + + I++Y
Sbjct: 162 SALDESNKRNIEEMIHRY 179
>gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis
ATP-binding export protein. CcmA, the ATP-binding
component of the bacterial CcmAB transporter. The CCM
family is involved in bacterial cytochrome c biogenesis.
Cytochrome c maturation in E. coli requires the ccm
operon, which encodes eight membrane proteins
(CcmABCDEFGH). CcmE is a periplasmic heme chaperon that
binds heme covalently and transfers it onto
apocytochrome c in the presence of CcmF, CcmG, and CcmH.
The CcmAB proteins represent an ABC transporter and the
CcmCD proteins participate in heme transfer to CcmE.
Length = 201
Score = 64.4 bits (157), Expect = 5e-12
Identities = 45/140 (32%), Positives = 59/140 (42%), Gaps = 19/140 (13%)
Query: 308 IVGDNGAGKTTLLKIIMGIISPTAG-TRTVHRNLKFGYFSQH-------HVDQLDMNLRC 359
+ G NG+GKTTLL+I+ G+ P AG L F S H + L
Sbjct: 31 VTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLGHAPGIKTTLSV 90
Query: 360 VQLLE--AAFPGKPQEEY---RRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAP 414
++ L A Q E R L GF D V LS GQ+ RVA AR+ ++
Sbjct: 91 LENLRFWHADHSDEQVEEALARVGLNGFE---DRP---VAQLSAGQQRRVALARLLLSGR 144
Query: 415 NFLVLDEPTNHLDIETIEAL 434
+LDEPT LD +
Sbjct: 145 PLWILDEPTTALDKAGVARF 164
>gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components
[Carbohydrate transport and metabolism].
Length = 338
Score = 66.5 bits (163), Expect = 5e-12
Identities = 43/148 (29%), Positives = 66/148 (44%), Gaps = 40/148 (27%)
Query: 306 ICIVGDNGAGKTTLLKIIMGIISPTAGT-----RTV------HRNLKFGYFSQH----HV 350
+ ++G +G GK+TLL++I G+ PT+G R V R + F + H
Sbjct: 32 VVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAM-VFQNYALYPH- 89
Query: 351 DQLDMNLRCVQLLEAAFP----GKPQEEYRRQ-------LGGFGVSGDLALQFVGSLSGG 399
M + + + AF G P+ E ++ LG L + LSGG
Sbjct: 90 ----MTVY--ENI--AFGLKLRGVPKAEIDKRVKEVAKLLG----LEHLLNRKPLQLSGG 137
Query: 400 QKSRVAFARMCMAAPNFLVLDEPTNHLD 427
Q+ RVA AR + P +LDEP ++LD
Sbjct: 138 QRQRVALARALVRKPKVFLLDEPLSNLD 165
>gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 259
Score = 65.2 bits (159), Expect = 6e-12
Identities = 47/174 (27%), Positives = 76/174 (43%), Gaps = 18/174 (10%)
Query: 275 PILQLSEVNFEYVPGKP--ILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAG 332
+L +S ++ Y GKP L +V L + ++G +G GKTTLL +I G ++P+ G
Sbjct: 2 CMLNVSHLSLSY-EGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRG 60
Query: 333 TRTV-HRNLKFGYFSQHHVDQLD-----MNLRCVQLLEAAFPGKPQEEYRR------QLG 380
+ + R ++ + V Q + +N+ G + + R L
Sbjct: 61 SIQLNGRRIEGPGAERGVVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALV 120
Query: 381 GFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEAL 434
G +++ LSGG + RV AR P L+LDEP LD T E +
Sbjct: 121 GLE---GAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQM 171
>gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter
ATP-binding subunit. This model describes daunorubicin
resistance ABC transporter, ATP binding subunit in
bacteria and archaea. This model is restricted in its
scope to preferentially recognize the ATP binding
subunit associated with effux of the drug, daunorubicin.
This transport system belong to the larger ATP-Binding
Cassette (ABC) transporter superfamily. The
characteristic feature of these transporter is the
obligatory coupling of ATP hydrolysis to substrate
translocation. The minimal configuration of bacterial
ABC transport system: an ATPase or ATP binding subunit;
An integral membrane protein; a hydrophilic polypetpide,
which likely functions as substrate binding protein. In
eukaryotes proteins of similar function include p-gyco
proteins, multidrug resistance protein etc [Transport
and binding proteins, Other].
Length = 302
Score = 65.9 bits (161), Expect = 7e-12
Identities = 44/147 (29%), Positives = 67/147 (45%), Gaps = 27/147 (18%)
Query: 308 IVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGY----------------FSQHHVD 351
+G NGAGKTT ++++ ++ PT+GT V GY VD
Sbjct: 24 FLGPNGAGKTTTIRMLTTLLRPTSGTARV-----AGYDVVREPRKVRRSIGIVPQYASVD 78
Query: 352 QLDMNLRCVQLLEAAFPGKPQEEYRRQ----LGGFGVSGDLALQFVGSLSGGQKSRVAFA 407
+ D+ R + G P++E + L F + G+ A + VG+ SGG + R+ A
Sbjct: 79 E-DLTGRENLEMMGRLYGLPKDEAEERAEELLELFEL-GEAADRPVGTYSGGMRRRLDIA 136
Query: 408 RMCMAAPNFLVLDEPTNHLDIETIEAL 434
+ P+ L LDEPT LD T A+
Sbjct: 137 ASLIHQPDVLFLDEPTTGLDPRTRRAI 163
>gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in
Fe-S cluster assembly, ATPase component. Biosynthesis
of iron-sulfur clusters (Fe-S) depends on multi-protein
systems. The SUF system of E. coli and Erwinia
chrysanthemi is important for Fe-S biogenesis under
stressful conditions. The SUF system is made of six
proteins: SufC is an atypical cytoplasmic ABC-ATPase,
which forms a complex with SufB and SufD; SufA plays the
role of a scaffold protein for assembly of iron-sulfur
clusters and delivery to target proteins; SufS is a
cysteine desulfurase which mobilizes the sulfur atom
from cysteine and provides it to the cluster; SufE has
no associated function yet.
Length = 200
Score = 64.1 bits (157), Expect = 7e-12
Identities = 48/171 (28%), Positives = 69/171 (40%), Gaps = 44/171 (25%)
Query: 286 YVPGKPILTNVCL----GATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLK 341
V GK IL V L G ++G NG+GK+TL K IMG +
Sbjct: 9 SVGGKEILKGVNLTIKKGEV----HALMGPNGSGKSTLAKTIMGH----PKYEVTEGEIL 60
Query: 342 FGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGF----------GVSGDLALQ 391
F D D+ P+E R +LG F GV L+
Sbjct: 61 FK-----GEDITDLP--------------PEE--RARLGIFLAFQYPPEIPGVKNADFLR 99
Query: 392 FVG-SLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441
+V SGG+K R ++ + P+ +LDEP + LDI+ + + + INK
Sbjct: 100 YVNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKL 150
>gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA. This
model describes the cyt c biogenesis protein encoded by
ccmA in bacteria. An exception is, an arabidopsis
protein. Quite likely this is encoded by an organelle.
Bacterial c-type cytocromes are located on the
periplasmic side of the cytoplasmic membrane. Several
gene products encoded in a locus designated as 'ccm' are
implicated in the transport and assembly of the
functional cytochrome C. This cluster includes genes:
ccmA;B;C;D;E;F;G and H. The posttranslational pathway
includes the transport of heme moiety, the secretion of
the apoprotein and the covalent attachment of the heme
with the apoprotein. The proteins ccmA and B represent
an ABC transporter; ccmC and D participate in heme
transfer to ccmE, which function as a periplasmic heme
chaperone. The presence of ccmF, G and H is suggested to
be obligatory for the final functional assembly of
cytochrome c [Protein fate, Protein and peptide
secretion and trafficking, Transport and binding
proteins, Other].
Length = 198
Score = 63.9 bits (156), Expect = 8e-12
Identities = 40/160 (25%), Positives = 66/160 (41%), Gaps = 11/160 (6%)
Query: 289 GKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGT---RTVHRNLKFGYF 345
+ + + + + G NG GKTTLL+I+ G++ P +G +
Sbjct: 12 ERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEP 71
Query: 346 SQH-----HVDQLDMNLRCVQLLE--AAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSG 398
++ H+ L L ++ L AA G Q L G++G LS
Sbjct: 72 HRNILYLGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTG-FEDLPAAQLSA 130
Query: 399 GQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAI 438
GQ+ R+A AR+ ++ +LDEPT LD + L +
Sbjct: 131 GQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLL 170
>gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd
biosynthesis, fused ATPase and permease components
[Energy production and conversion / Posttranslational
modification, protein turnover, chaperones].
Length = 573
Score = 66.6 bits (163), Expect = 9e-12
Identities = 59/217 (27%), Positives = 94/217 (43%), Gaps = 31/217 (14%)
Query: 240 VQSKIKQLERLPELKPIEKEVEVVLKFPDTELLSPP-ILQLSEVNFEYVPGK--PILTNV 296
V + ++L + + KP EV FPD + + L+L V+F Y PG+ L N
Sbjct: 306 VIASARRLNDILDQKP---EVT----FPDEQTATTGQALELRNVSFTY-PGQQTKALKNF 357
Query: 297 CLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMN 356
L ++ I+G +G+GK+TLL+++ G P G+ T++ Q + + +
Sbjct: 358 NLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVL 417
Query: 357 LRCVQL--------LEAAFPGKPQEEYRRQLGGFGVSGDLALQ-------FVG----SLS 397
+ V L L A P EE L G+ L ++G LS
Sbjct: 418 TQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLE-KLLESAPDGLNTWLGEGGRRLS 476
Query: 398 GGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEAL 434
GG++ R+A AR + +LDEPT LD T +
Sbjct: 477 GGERRRLALARALLHDAPLWLLDEPTEGLDPITERQV 513
>gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 277
Score = 64.8 bits (158), Expect = 1e-11
Identities = 54/183 (29%), Positives = 82/183 (44%), Gaps = 23/183 (12%)
Query: 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGT-- 333
+++ ++ + Y K L N+ A SRI ++G NGAGK+TL + GI+ PT+G+
Sbjct: 3 LIETRDLCYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVL 62
Query: 334 --------RTVHRNLKF-GYFSQHHVDQL-------DMNLRCVQL-LEAAFPGKPQEEYR 376
+ KF G Q+ DQ+ D+ + L L+
Sbjct: 63 IRGEPITKENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSAL 122
Query: 377 RQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGK 436
LG +L + LSGG+K RVA A + P LVLDEPT LD + ++ L
Sbjct: 123 HMLG----LEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELID 178
Query: 437 AIN 439
+N
Sbjct: 179 FLN 181
>gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG
transporter subfamily. The White subfamily represents
ABC transporters homologous to the Drosophila white
gene, which acts as a dimeric importer for eye pigment
precursors. The eye pigmentation of Drosophila is
developed from the synthesis and deposition in the cells
of red pigments, which are synthesized from guanine, and
brown pigments, which are synthesized from tryptophan.
The pigment precursors are encoded by the white, brown,
and scarlet genes, respectively. Evidence from genetic
and biochemical studies suggest that the White and Brown
proteins function as heterodimers to import guanine,
while the White and Scarlet proteins function to import
tryptophan. However, a recent study also suggests that
White may be involved in the transport of a metabolite,
such as 3-hydroxykynurenine, across intracellular
membranes. Mammalian ABC transporters belonging to the
White subfamily (ABCG1, ABCG5, and ABCG8) have been
shown to be involved in the regulation of
lipid-trafficking mechanisms in macrophages,
hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8),
the human homolog of the Drosophila white gene is
induced in monocyte-derived macrophages during
cholesterol influx mediated by acetylated low-density
lipoprotein. It is possible that human ABCG1 forms
heterodimers with several heterologous partners.
Length = 226
Score = 63.8 bits (156), Expect = 1e-11
Identities = 43/140 (30%), Positives = 68/140 (48%), Gaps = 18/140 (12%)
Query: 306 ICIVGDNGAGKTTLLKIIMGII---SPTAGTRTVH-RNLKFGYFSQH--HVDQLDMNLRC 359
+ I+G +G+GKTTLL I G + T+G + + K F + +V Q D+ L
Sbjct: 36 MAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKCVAYVRQDDILLPG 95
Query: 360 VQLLEA-------AFPGKPQEEYRRQLGGFGVSGDLALQFVG-----SLSGGQKSRVAFA 407
+ + E P K + R++ + DLAL +G +SGG++ RV+ A
Sbjct: 96 LTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIA 155
Query: 408 RMCMAAPNFLVLDEPTNHLD 427
+ P L+LDEPT+ LD
Sbjct: 156 VQLLWDPKVLILDEPTSGLD 175
>gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD,
subfamily C. The CYD subfamily implicated in cytochrome
bd biogenesis. The CydC and CydD proteins are important
for the formation of cytochrome bd terminal oxidase of
E. coli and it has been proposed that they were
necessary for biosynthesis of the cytochrome bd quinol
oxidase and for periplasmic c-type cytochromes. CydCD
were proposed to determine a heterooligomeric complex
important for heme export into the periplasm or to be
involved in the maintenance of the proper redox state of
the periplasmic space. In Bacillus subtilis, the absence
of CydCD does not affect the presence of halo-cytochrome
c in the membrane and this observation suggests that
CydCD proteins are not involved in the export of heme in
this organism.
Length = 178
Score = 62.7 bits (153), Expect = 1e-11
Identities = 42/155 (27%), Positives = 70/155 (45%), Gaps = 23/155 (14%)
Query: 277 LQLSEVNFEYVP-GKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRT 335
L ++ V+F Y + +L N+ L +I ++G +G+GK+TLL+++ G + P G T
Sbjct: 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEIT 60
Query: 336 VHRNLKFGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGS 395
V L+ L + Q Y L + +L +F
Sbjct: 61 ---------LDGVPVSDLEKALS------SLISVLNQRPY---LFDTTLRNNLGRRF--- 99
Query: 396 LSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIET 430
SGG++ R+A AR+ + ++LDEPT LD T
Sbjct: 100 -SGGERQRLALARILLQDAPIVLLDEPTVGLDPIT 133
>gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 259
Score = 63.9 bits (156), Expect = 2e-11
Identities = 51/174 (29%), Positives = 79/174 (45%), Gaps = 42/174 (24%)
Query: 287 VPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFS 346
+ G+ +L V L + I+G NGAGK+TLLK + G +SP +G T +
Sbjct: 11 LAGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVT---------LN 61
Query: 347 QHHVDQL---DM-NLRCV--QLLEAAFP-----------------GKPQEEYR---RQLG 380
++ ++ R V Q AFP +P+E+ R + L
Sbjct: 62 GVPLNSWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALA 121
Query: 381 GFGVSGDLALQFVGSLSGGQKSRVAFARMC------MAAPNFLVLDEPTNHLDI 428
+SG LA + +LSGG++ RV AR+ + + +L LDEPT+ LDI
Sbjct: 122 ATDLSG-LAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDI 174
>gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c
biogenesis, ATPase component [Posttranslational
modification, protein turnover, chaperones].
Length = 209
Score = 63.1 bits (154), Expect = 2e-11
Identities = 44/144 (30%), Positives = 61/144 (42%), Gaps = 22/144 (15%)
Query: 308 IVGDNGAGKTTLLKIIMGIISPTAGT------------RTVHRNLKFGYFSQHHVDQLDM 355
I G NGAGKTTLL+I+ G++ P AG + H+ L Y + ++
Sbjct: 33 ITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQALL--YLGHQPGIKTEL 90
Query: 356 ----NLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCM 411
NL Q L G++G L G LS GQ+ RVA AR+ +
Sbjct: 91 TALENLHFWQRF---HGSGNAATIWEALAQVGLAGLEDLPV-GQLSAGQQRRVALARLWL 146
Query: 412 AAPNFLVLDEPTNHLDIETIEALG 435
+ +LDEP LD E + L
Sbjct: 147 SPAPLWILDEPFTALDKEGVALLT 170
>gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit;
Provisional.
Length = 233
Score = 63.3 bits (154), Expect = 2e-11
Identities = 49/186 (26%), Positives = 78/186 (41%), Gaps = 31/186 (16%)
Query: 275 PILQLSEVNFEYVPGK---PILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTA 331
+LQ + Y G +L NV + IVG +G+GK+TLL ++ G+ +PT+
Sbjct: 4 ILLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTS 63
Query: 332 G---------------TRTVHRNLKFGYFSQHH--------VDQLDMNLRCVQLLEAAFP 368
G + RN K G+ Q H ++ + M L L+ P
Sbjct: 64 GDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPL----LIGKKKP 119
Query: 369 GKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDI 428
+ L G+ A LSGG++ RVA AR + P ++ DEPT +LD
Sbjct: 120 AEINSRALEMLAAVGLE-HRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDA 178
Query: 429 ETIEAL 434
+++
Sbjct: 179 RNADSI 184
>gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 213
Score = 62.5 bits (152), Expect = 3e-11
Identities = 50/173 (28%), Positives = 74/173 (42%), Gaps = 29/173 (16%)
Query: 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRT 335
+L L V+ +PG +L NV + ++G +G GK+TLL ++G + AG +
Sbjct: 2 MLCLKNVSLR-LPGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGAL---AGQFS 57
Query: 336 VHRNLKFGYFSQHHVDQLDMNLRCV----------------QLLEAAFPGKPQEEYRRQ- 378
L + +D L R + Q L A P + RR
Sbjct: 58 CTGELWLN---EQRLDMLPAAQRQIGILFQDALLFPHLSVGQNLLFALPATLKGNARRNA 114
Query: 379 ----LGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD 427
L G+ G Q +LSGGQ++RVA R +A P L+LDEP + LD
Sbjct: 115 ANAALERSGLDG-AFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLD 166
>gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog
[General function prediction only].
Length = 591
Score = 65.0 bits (159), Expect = 3e-11
Identities = 43/140 (30%), Positives = 68/140 (48%), Gaps = 10/140 (7%)
Query: 306 ICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEA 365
I I+G NG GKTT +K++ G+I P G+ +LK Y Q+ D + LL +
Sbjct: 370 IGILGPNGIGKTTFVKLLAGVIKPDEGSEE---DLKVSYKPQYISPDYDGTVE--DLLRS 424
Query: 366 AFPGKPQEEYRRQ--LGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAP-NFLVLDEP 422
A Y + + + DL + V LSGG+ RVA A ++ + +LDEP
Sbjct: 425 AIRSAFGSSYFKTEIVKPLNL-EDLLERPVDELSGGELQRVAIA-AALSREADLYLLDEP 482
Query: 423 TNHLDIETIEALGKAINKYT 442
+ +LD+E + K I ++
Sbjct: 483 SAYLDVEQRIIVAKVIRRFI 502
Score = 50.8 bits (122), Expect = 8e-07
Identities = 42/147 (28%), Positives = 60/147 (40%), Gaps = 29/147 (19%)
Query: 308 IVGDNGAGKTTLLKIIMGIISPTAGT--RTVHRNLKFGYFS----QHHVDQL-DMNLRCV 360
I+G NG GK+T LKI+ G + P G + F Q++ +L + LR V
Sbjct: 105 ILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTELQNYFKKLYEGELRAV 164
Query: 361 Q------LLEAAFPGKPQE------------EYRRQLGGFGVSGDLALQFVGSLSGGQKS 402
L+ GK E E +LG V + V LSGG+
Sbjct: 165 HKPQYVDLIPKVVKGKVGELLKKVDERGKFDEVVERLGLENVLD----RDVSELSGGELQ 220
Query: 403 RVAFARMCMAAPNFLVLDEPTNHLDIE 429
RVA A + + DEP+++LDI
Sbjct: 221 RVAIAAALLRDADVYFFDEPSSYLDIR 247
>gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of
the Na+ transporter. NatA is the ATPase component of a
bacterial ABC-type Na+ transport system called NatAB,
which catalyzes ATP-dependent electrogenic Na+ extrusion
without mechanically coupled proton or K+ uptake. NatB
possess six putative membrane spanning regions at its
C-terminus. In B. subtilis, NatAB is inducible by agents
such as ethanol and protonophores, which lower the
proton-motive force across the membrane. The closest
sequence similarity to NatA is exhibited by DrrA of the
two-component daunorubicin- and doxorubicin-efflux
system. Hence, the functional NatAB is presumably
assembled with two copies of a single ATP-binding
protein and a single integral membrane protein.
Length = 218
Score = 62.4 bits (152), Expect = 3e-11
Identities = 45/152 (29%), Positives = 64/152 (42%), Gaps = 23/152 (15%)
Query: 308 IVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEAAF 367
++G NGAGKTT L+++ G++ P AG TV G+ + L V +
Sbjct: 36 LLGPNGAGKTTTLRMLAGLLEPDAGFATVD-----GFDVVKEPAEARRRLGFVSDSTGLY 90
Query: 368 PGKPQEEYRRQLGGF-GVSGD--------LALQF---------VGSLSGGQKSRVAFARM 409
E G G+ GD LA + VG S G + +VA AR
Sbjct: 91 DRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARA 150
Query: 410 CMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441
+ P L+LDEPT LD+ AL + I +
Sbjct: 151 LVHDPPVLLLDEPTTGLDVMATRALREFIRQL 182
>gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding
protein. This model represents LolD, a member of the
ABC transporter family (pfam00005). LolD is involved in
localization of lipoproteins in some bacteria. It works
with a transmembrane protein LolC, which in some species
is a paralogous pair LolC and LolE. Depending on whether
the residue immediately following the new, modified
N-terminal Cys residue, the nascent lipoprotein may be
carried further by LolA and LolB to the outer membrane,
or remain at the inner membrane. The top scoring
proteins excluded by this model include homologs from
the archaeal genus Methanosarcina [Protein fate, Protein
and peptide secretion and trafficking].
Length = 221
Score = 62.0 bits (151), Expect = 4e-11
Identities = 49/174 (28%), Positives = 75/174 (43%), Gaps = 23/174 (13%)
Query: 276 ILQLSEVNFEYVPGK---PILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAG 332
+L+ + Y GK +L V L + IVG +G+GK+TLL ++ G+ +PT+G
Sbjct: 1 LLKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSG 60
Query: 333 TRTVH---------------RNLKFGYFSQHHVDQLDMN-LRCVQ---LLEAAFPGKPQE 373
+ RN K G+ Q H D L V L+ + +E
Sbjct: 61 EVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKE 120
Query: 374 EYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD 427
L G+ LSGG++ RVA AR + P+ ++ DEPT +LD
Sbjct: 121 RAYEMLEKVGL-EHRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLD 173
>gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component
[Energy production and conversion / Inorganic ion
transport and metabolism].
Length = 245
Score = 62.4 bits (152), Expect = 4e-11
Identities = 43/143 (30%), Positives = 69/143 (48%), Gaps = 16/143 (11%)
Query: 303 ESRIC-IVGDNGAGKTTLLKIIMGIISPTAGTRTV-HRNL-KFGYFSQHHVDQL------ 353
E I ++G+NGAGKTTLL++I ++ P +G T+ + + F + + L
Sbjct: 27 EGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGVLFGERGL 86
Query: 354 --DMNLRCVQLLEAAFPGKPQEEYRRQLG----GFGVSGDLALQFVGSLSGGQKSRVAFA 407
+ R A G ++E + ++ + + + VG S G K +VA A
Sbjct: 87 YARLTARENLKYFARLNGLSRKEIKARIAELSKRLQL-LEYLDRRVGEFSTGMKQKVAIA 145
Query: 408 RMCMAAPNFLVLDEPTNHLDIET 430
R + P+ LVLDEPT+ LDI T
Sbjct: 146 RALVHDPSILVLDEPTSGLDIRT 168
>gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein.
This protein is related to a Proteobacterial ATP
transporter that exports lipid A and to eukaryotic
P-glycoproteins.
Length = 576
Score = 64.3 bits (157), Expect = 5e-11
Identities = 58/230 (25%), Positives = 91/230 (39%), Gaps = 58/230 (25%)
Query: 248 ERLPELKPIEKEVEVVLKFPDTELLSP-PI---LQLSEVNFEYV--PGKPILTNVCLGAT 301
ERL EL + E +K P P P+ ++ +VNF Y P +P L + L
Sbjct: 309 ERLIELL----QAEPDIKAPAHPKTLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVR 364
Query: 302 LESRICIVGDNGAGKTTLLKIIMGIISPTAG----------------------------- 332
+ +VG +GAGK+TL ++++ P +G
Sbjct: 365 PGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQDPV 424
Query: 333 --TRTVHRNLKFGYFSQHHVDQLDMNLR--CVQLLEAAFPGKPQEEYRRQLGGFGVSGDL 388
+V N+++G D D + F E Y LG GV+
Sbjct: 425 LFAASVMENIRYG-----RPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVT--- 476
Query: 389 ALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAI 438
LSGGQ+ R+A AR + L+LDE T+ LD E+ + + +A+
Sbjct: 477 -------LSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQAL 519
>gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional.
Length = 306
Score = 62.9 bits (153), Expect = 6e-11
Identities = 45/135 (33%), Positives = 63/135 (46%), Gaps = 17/135 (12%)
Query: 308 IVGDNGAGKTTLLKIIMGIISPTAGT----------RTVHRNLKFGYFSQHHVDQLDMNL 357
++G NGAGKTT L++++G+ P AG+ R H + G Q D LD +
Sbjct: 38 LLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGVVPQ--FDNLDPDF 95
Query: 358 RCVQ--LLEAAFPGKPQEEYRRQLGG---FGVSGDLALQFVGSLSGGQKSRVAFARMCMA 412
+ L+ + G R + F + A VG LSGG K R+ AR +
Sbjct: 96 TVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVN 155
Query: 413 APNFLVLDEPTNHLD 427
P+ LVLDEPT LD
Sbjct: 156 DPDVLVLDEPTTGLD 170
>gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase
and permease components [General function prediction
only].
Length = 580
Score = 63.8 bits (156), Expect = 6e-11
Identities = 56/185 (30%), Positives = 80/185 (43%), Gaps = 48/185 (25%)
Query: 288 PG--KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVH------RN 339
PG KPIL + + I+G +G+GK+TL ++++GI PT+G +V R
Sbjct: 345 PGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSG--SVRLDGADLRQ 402
Query: 340 LKFGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGD------------ 387
+H + L + V+L F G E R FG D
Sbjct: 403 WDREQLGRH-IGYLPQD---VEL----FDGTIAENIAR----FGEEADPEKVIEAARLAG 450
Query: 388 ---LALQF-------VG----SLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEA 433
L L+ +G +LSGGQ+ R+A AR P +VLDEP ++LD E A
Sbjct: 451 VHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAA 510
Query: 434 LGKAI 438
L AI
Sbjct: 511 LAAAI 515
>gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 283
Score = 62.6 bits (152), Expect = 7e-11
Identities = 52/172 (30%), Positives = 82/172 (47%), Gaps = 23/172 (13%)
Query: 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRT 335
IL++ E+N+ Y G L + + I+G NGAGK+TL + + GI+ P++G
Sbjct: 5 ILKVEELNYNYSDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSG--R 62
Query: 336 VHRNLKFGYFSQHHVDQLDMNLRCV------QLLEAAF----------PGKPQEEYRRQ- 378
+ + K +S+ + +L ++ V QL A+ P++E R++
Sbjct: 63 ILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRV 122
Query: 379 ---LGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD 427
L G+ L + LS GQK RVA A + + P LVLDEPT LD
Sbjct: 123 DNALKRTGIE-HLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLD 173
>gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 214
Score = 61.4 bits (149), Expect = 7e-11
Identities = 48/184 (26%), Positives = 80/184 (43%), Gaps = 17/184 (9%)
Query: 268 DTELLS--PPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMG 325
E L PP+L + F +P+ + + + GDNGAGKTTLL+++ G
Sbjct: 1 MIEPLHTAPPLLAAHALAFSR-NEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAG 59
Query: 326 IISPTAG--------TRTVHRNLKFGYFSQHHVDQLDMNLRCVQ---LLEAAFPGKPQEE 374
++ +G R+ Y H+ L +L ++ L + ++
Sbjct: 60 LLHVESGQIQIDGKTATRGDRSRFMAYLG--HLPGLKADLSTLENLHFLCGLHGRRAKQM 117
Query: 375 YRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEAL 434
L G++G V LS GQK R+A AR+ ++ +LDEP +LD+E I +
Sbjct: 118 PGSALAIVGLAG-YEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLV 176
Query: 435 GKAI 438
+ I
Sbjct: 177 NRMI 180
>gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional.
Length = 258
Score = 61.7 bits (151), Expect = 8e-11
Identities = 48/171 (28%), Positives = 71/171 (41%), Gaps = 42/171 (24%)
Query: 289 GKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAG---------------- 332
G+ +L +V L + I+G NGAGK+TLL+ + G +SP +G
Sbjct: 14 GRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAE 73
Query: 333 ---TRTV---HRNLKFGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYR---RQLGGFG 383
R V H +L F F+ V V + A E+ L
Sbjct: 74 LARRRAVLPQHSSLSFP-FTVEEV---------VAMGRAPHGLSRAEDDALVAAALAQVD 123
Query: 384 VSGDLALQFVGSLSGGQKSRVAFAR------MCMAAPNFLVLDEPTNHLDI 428
++ LA + LSGG++ RV AR P +L+LDEPT+ LD+
Sbjct: 124 LAH-LAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDL 173
>gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit,
PQQ-dependent alcohol dehydrogenase system. Members of
this protein family are the ATP-binding subunit of an
ABC transporter system that is associated with PQQ
biosynthesis and PQQ-dependent alcohol dehydrogenases.
While this family shows homology to several efflux ABC
transporter subunits, the presence of a periplasmic
substrate-binding protein and association with systems
for catabolism of alcohols suggests a role in import
rather than detoxification [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 236
Score = 61.5 bits (150), Expect = 9e-11
Identities = 51/179 (28%), Positives = 79/179 (44%), Gaps = 30/179 (16%)
Query: 277 LQLSEVNFEYVPGKPILTNVCLGATLES-RICIV-GDNGAGKTTLLKIIMGIISPTAGTR 334
L+++ ++F Y + L +V T+ R + G NGAGK+TL ++ + G
Sbjct: 2 LEVAGLSFRYGA-RRALDDVSF--TVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQEGQI 58
Query: 335 TVHRNLKFGYFSQHH----------VDQ---LDMNLRCVQLLE--AAFPGKPQEEYR--- 376
+V G+ + V Q LD++L Q L AA G + E R
Sbjct: 59 SV-----AGHDLRRAPRAALARLGVVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARARI 113
Query: 377 -RQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEAL 434
L G++ + A V L+GG + RV AR + P L+LDEPT LD + A+
Sbjct: 114 AELLARLGLA-ERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAI 171
>gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 241
Score = 61.4 bits (149), Expect = 9e-11
Identities = 53/177 (29%), Positives = 85/177 (48%), Gaps = 26/177 (14%)
Query: 277 LQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTV 336
++ EV++ GK IL ++ + + IVG +GAGK+TL+K+I +I PT G+ +
Sbjct: 4 IEFKEVSY-SSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILI 62
Query: 337 HRNLKFGYFSQHHVDQLDMNLRCVQLLEAA--FPGKPQE--EYRRQLGG----------- 381
+D +D+ + + + F G ++ EY L G
Sbjct: 63 DGV------DIKTIDVIDLRRKIGMVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLS 116
Query: 382 -FGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD---IETIEAL 434
G++ + A + V +LSGG+ RV+ AR P L+LDEPT+ LD E IE L
Sbjct: 117 IVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEEL 173
>gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an
uncharacterized transporter similar in sequence to NatA.
NatA is the ATPase component of a bacterial ABC-type
Na+ transport system called NatAB, which catalyzes
ATP-dependent electrogenic Na+ extrusion without
mechanically coupled to proton or K+ uptake. NatB
possess six putative membrane spanning regions at its
C-terminus. In B. subtilis, NatAB is inducible by agents
such as ethanol and protonophores, which lower the
proton-motive force across the membrane. The closest
sequence similarity to NatA is exhibited by DrrA of the
two-component daunorubicin- and doxorubicin-efflux
system. Hence, the functional NatAB is presumably
assembled with two copies of the single ATP-binding
protein and the single integral membrane protein.
Length = 236
Score = 61.2 bits (149), Expect = 9e-11
Identities = 43/147 (29%), Positives = 64/147 (43%), Gaps = 14/147 (9%)
Query: 309 VGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQH---------HVDQL--DMNL 357
+G NGAGKTT LKI+ G++ PT+G V + + + QL D+ +
Sbjct: 53 IGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLPV 112
Query: 358 RCVQLLEAAFPGKPQEEYRRQLGGFGVS---GDLALQFVGSLSGGQKSRVAFARMCMAAP 414
L AA P ++++L +L V LS GQ+ R A + P
Sbjct: 113 IDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEP 172
Query: 415 NFLVLDEPTNHLDIETIEALGKAINKY 441
L LDEPT LD+ E + + +Y
Sbjct: 173 EILFLDEPTIGLDVVAQENIRNFLKEY 199
>gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of
polysaccharide transport system. The KpsT/Wzt ABC
transporter subfamily is involved in extracellular
polysaccharide export. Among the variety of
membrane-linked or extracellular polysaccharides
excreted by bacteria, only capsular polysaccharides,
lipopolysaccharides, and teichoic acids have been shown
to be exported by ABC transporters. A typical system is
made of a conserved integral membrane and an ABC. In
addition to these proteins, capsular polysaccharide
exporter systems require two 'accessory' proteins to
perform their function: a periplasmic (E.coli) or a
lipid-anchored outer membrane protein called OMA
(Neisseria meningitidis and Haemophilus influenza) and a
cytoplasmic membrane protein MPA2.
Length = 224
Score = 61.0 bits (149), Expect = 9e-11
Identities = 44/150 (29%), Positives = 65/150 (43%), Gaps = 28/150 (18%)
Query: 287 VPGKPILTNVCLGATLES--RICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN----L 340
V L +V + RI ++G NGAGK+TLL+++ GI P +GT TV L
Sbjct: 32 VGEFWALKDVSF--EVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLL 89
Query: 341 KFGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRR---------QLGGFGVSGDLALQ 391
G + + N+ L G ++E +LG F DL
Sbjct: 90 GLGGGFNPELTGRE-NIY----LNGRLLGLSRKEIDEKIDEIIEFSELGDF---IDLP-- 139
Query: 392 FVGSLSGGQKSRVAFARMCMAAPNFLVLDE 421
V + S G K+R+AFA P+ L++DE
Sbjct: 140 -VKTYSSGMKARLAFAIATALEPDILLIDE 168
>gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional.
Length = 222
Score = 60.7 bits (147), Expect = 1e-10
Identities = 55/181 (30%), Positives = 82/181 (45%), Gaps = 23/181 (12%)
Query: 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAG--- 332
+++ V+ Y+ G+ L V + G +GAGK+TLLK+I GI P+AG
Sbjct: 1 MIRFEHVSKAYLGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIW 60
Query: 333 ------TRTVHRNLKF-----GYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQ--- 378
TR +R + F G Q H +D + + G ++ RR+
Sbjct: 61 FSGHDITRLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSA 120
Query: 379 -LGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKA 437
L G+ D A F LSGG++ RV AR + P L+ DEPT +LD +AL +
Sbjct: 121 ALDKVGLL-DKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLD----DALSEG 175
Query: 438 I 438
I
Sbjct: 176 I 176
>gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC
transporter ATP-binding subunit GldA. Members of this
protein family are exclusive to the Bacteroidetes phylum
(previously Cytophaga-Flavobacteria-Bacteroides). GldA
is an ABC transporter ATP-binding protein (pfam00005)
linked to a type of rapid surface gliding motility found
in certain Bacteroidetes, such as Flavobacterium
johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA
abolish the gliding phenotype. Gliding motility appears
closely linked to chitin utilization in the model
species Flavobacterium johnsoniae. Bacteroidetes with
members of this protein family appear to have all of the
genes associated with gliding motility.
Length = 301
Score = 62.1 bits (151), Expect = 1e-10
Identities = 47/153 (30%), Positives = 70/153 (45%), Gaps = 26/153 (16%)
Query: 309 VGDNGAGKTTLLKIIMGIISPTAGT------------RTVHRNLKFGYFSQHHVDQLDMN 356
+G NGAGK+T +KII G + P +G+ + V RN+ GY +H+ LDM
Sbjct: 34 LGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNI--GYLPEHNPLYLDMY 91
Query: 357 LRCVQLLEAAFPGKPQEEYRRQ------LGGFGVSGDLALQFVGSLSGGQKSRVAFARMC 410
+R A G + +++ L G + +G LS G + RV A+
Sbjct: 92 VREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPE---QHKKIGQLSKGYRQRVGLAQAL 148
Query: 411 MAAPNFLVLDEPTNHLD---IETIEALGKAINK 440
+ P L+LDEPT LD + I + K I K
Sbjct: 149 IHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGK 181
>gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding
protein. DrrA is the ATP-binding protein component of a
bacterial exporter complex that confers resistance to
the antibiotics daunorubicin and doxorubicin. In
addition to DrrA, the complex includes an integral
membrane protein called DrrB. DrrA belongs to the ABC
family of transporters and shares sequence and
functional similarities with a protein found in cancer
cells called P-glycoprotein. ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region in
addition to the Walker A motif/P-loop and Walker B motif
commonly found in a number of ATP- and GTP-binding and
hydrolyzing proteins.
Length = 220
Score = 60.8 bits (148), Expect = 1e-10
Identities = 44/149 (29%), Positives = 67/149 (44%), Gaps = 19/149 (12%)
Query: 308 IVGDNGAGKTTLLKIIMGIISPTAG------------TRTVHRNLKFGYFSQHHVDQLDM 355
++G NGAGKTT +K++ ++ PT+G R V R + G Q ++
Sbjct: 31 LLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRI--GIVFQDLSVDDEL 88
Query: 356 NLRCVQLLEAAFPGKPQEEYRRQ----LGGFGVSGDLALQFVGSLSGGQKSRVAFARMCM 411
+ A G P E R + L G+ + A + V + SGG + R+ AR +
Sbjct: 89 TGWENLYIHARLYGVPGAERRERIDELLDFVGL-LEAADRLVKTYSGGMRRRLEIARSLV 147
Query: 412 AAPNFLVLDEPTNHLDIETIEALGKAINK 440
P L LDEPT LD +T + + I K
Sbjct: 148 HRPEVLFLDEPTIGLDPQTRAHVWEYIEK 176
>gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system,
permease and ATPase components [General function
prediction only].
Length = 604
Score = 62.3 bits (152), Expect = 2e-10
Identities = 61/225 (27%), Positives = 88/225 (39%), Gaps = 44/225 (19%)
Query: 227 IDTFRYNANRASSVQSKIKQLERLPELKPIEKEVEV-------VLKFPDTELLSPP--IL 277
I +R R + + ++ + E + + L +P L
Sbjct: 349 IADWRATLLRLAEFRQALEAAQMDTEKPARTGRRIDFDDNADHGITLENLSLRTPDGQTL 408
Query: 278 QLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGT--RT 335
LSE+NFE PG R+ I G++GAGKT+LL+ + G+ +G
Sbjct: 409 -LSELNFEVRPG--------------ERLLITGESGAGKTSLLRALAGLWPWGSGRISMP 453
Query: 336 VHRNLKF----GYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLA-- 389
L F Y Q LR A P E L G+ GDLA
Sbjct: 454 ADSALLFLPQRPYLPQG-------TLREALCYPNAAPDFSDAELVAVLHKVGL-GDLAER 505
Query: 390 LQFVGS----LSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIET 430
L LSGG++ R+AFAR+ + P ++ LDE T+ LD ET
Sbjct: 506 LDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEET 550
>gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit;
Provisional.
Length = 353
Score = 61.6 bits (150), Expect = 2e-10
Identities = 50/169 (29%), Positives = 69/169 (40%), Gaps = 50/169 (29%)
Query: 292 ILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVH---------RNLKF 342
+L ++ L + ++G +G+GKTTLL+II G+ T+G H R+ K
Sbjct: 17 VLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKV 76
Query: 343 GYFSQH-----HVDQLD-------------------MNLRCVQLLEAAFPGKPQEEYRRQ 378
G+ QH H+ D + + QLLE Q
Sbjct: 77 GFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMV-----------Q 125
Query: 379 LGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD 427
L LA ++ LSGGQK RVA AR P L+LDEP LD
Sbjct: 126 LA------HLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALD 168
>gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter,
ATP-binding protein. This ABC transporter ATP-binding
protein is found in a number of genomes in operon-like
contexts strongly suggesting a substrate specificity for
2-aminoethylphosphonate (2-AEP). The characterized
PhnSTUV system is absent in the genomes in which this
system is found. These genomes encode systems for the
catabolism of 2-AEP, making the need for a
2-AEP-specific transporter likely [Transport and binding
proteins, Amino acids, peptides and amines].
Length = 353
Score = 61.6 bits (150), Expect = 2e-10
Identities = 48/166 (28%), Positives = 72/166 (43%), Gaps = 48/166 (28%)
Query: 292 ILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGT---------------R-- 334
L ++ L +C++G +G GKTTLL+II G+ TAGT R
Sbjct: 19 ALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDY 78
Query: 335 -------------TVHRNLKFGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGG 381
TV N+ +G ++ + + ++ R +LL+ L G
Sbjct: 79 GIVFQSYALFPNLTVADNIAYGLKNRG-MGRAEVAERVAELLD--------------LVG 123
Query: 382 FGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD 427
S ++ G LSGGQ+ RVA AR +P L+LDEP + LD
Sbjct: 124 LPGSER---KYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALD 166
>gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase
component [Amino acid transport and metabolism].
Length = 240
Score = 60.2 bits (147), Expect = 2e-10
Identities = 44/150 (29%), Positives = 69/150 (46%), Gaps = 28/150 (18%)
Query: 305 RICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCV-QLL 363
+ I+G +G+GK+TLL+ + G+ P +G+ TV G + + +L + V Q
Sbjct: 30 VVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVD-GEDVGD--KKDILKLRRKVGMVFQQF 86
Query: 364 EAAFP----------------GKPQEEYRRQ----LGGFGVSGDLALQFVGSLSGGQKSR 403
FP + E R + L G++ D A + LSGGQ+ R
Sbjct: 87 NL-FPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLA-DKADAYPAQLSGGQQQR 144
Query: 404 VAFAR-MCMAAPNFLVLDEPTNHLDIETIE 432
VA AR + M P ++ DEPT+ LD E +
Sbjct: 145 VAIARALAM-DPKVMLFDEPTSALDPELVG 173
>gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of
multidrug resistance-associated protein, subfamily C.
This subfamily is also known as MRP (multidrug
resistance-associated protein). Some of the MRP members
have five additional transmembrane segments in their
N-terminus, but the function of these additional
membrane-spanning domains is not clear. The MRP was
found in the multidrug-resisting lung cancer cell in
which p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions, such as
glutathione, glucuronate, and sulfate.
Length = 204
Score = 59.0 bits (144), Expect = 3e-10
Identities = 40/191 (20%), Positives = 69/191 (36%), Gaps = 60/191 (31%)
Query: 264 LKFPDTELLSPPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKII 323
+ E + L+ ++N E G+ L IVG G+GK++LL +
Sbjct: 8 FTWDSGEQETSFTLK--DINLEVPKGE--LV------------AIVGPVGSGKSSLLSAL 51
Query: 324 MGIISPTAGTRTVHRNLKFGYFSQ----------------HHVDQ--LDMNLRCVQLLE- 364
+G + +G+ +V Y SQ D+ + ++ L
Sbjct: 52 LGELEKLSGSVSVPG--SIAYVSQEPWIQNGTIRENILFGKPFDEERYEKVIKACALEPD 109
Query: 365 -AAFPGKPQEEYRRQLGGFGVSGDLALQFVG----SLSGGQKSRVAFARMCMAAPNFLVL 419
P GDL +G +LSGGQK R++ AR + + +L
Sbjct: 110 LEILPD----------------GDLTE--IGEKGINLSGGQKQRISLARAVYSDADIYLL 151
Query: 420 DEPTNHLDIET 430
D+P + +D
Sbjct: 152 DDPLSAVDAHV 162
>gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein.
[Transport and binding proteins, Anions].
Length = 237
Score = 59.8 bits (145), Expect = 3e-10
Identities = 44/142 (30%), Positives = 66/142 (46%), Gaps = 24/142 (16%)
Query: 304 SRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVH---------RNLKFGYFSQHHV---- 350
S + ++G +G+GK+TLL+II G+ P +G ++ R+ K G+ QH+
Sbjct: 27 SLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIGFVFQHYALFKH 86
Query: 351 ----DQLDMNLRCVQLLEAAFPGKPQEEYRR-QLGGFGVSGDLALQFVGSLSGGQKSRVA 405
D + L + +A + +E QL G G + LSGGQ+ RVA
Sbjct: 87 LTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDR------YPNQLSGGQRQRVA 140
Query: 406 FARMCMAAPNFLVLDEPTNHLD 427
AR P L+LDEP LD
Sbjct: 141 LARALAVEPQVLLLDEPFGALD 162
>gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC
transporter, lactococcin 972 group. A gene pair with a
fairly wide distribution consists of a polypeptide
related to the lactococcin 972 (see TIGR01653) and
multiple-membrane-spanning putative immunity protein
(see TIGR01654). This model represents a small clade
within the ABC transporters that regularly are found
adjacent to these bacteriocin system gene pairs and are
likely serve as export proteins [Cellular processes,
Toxin production and resistance, Transport and binding
proteins, Unknown substrate].
Length = 206
Score = 59.2 bits (144), Expect = 4e-10
Identities = 42/149 (28%), Positives = 69/149 (46%), Gaps = 30/149 (20%)
Query: 306 ICIVGDNGAGKTTLLKIIMGIISPTAG----------------TRTVHRNLKFGYFSQHH 349
I+G++G+GK+TLL II + +G R K GY Q+
Sbjct: 27 YAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGQETPPLNSKKASKFRRE-KLGYLFQNF 85
Query: 350 -------VDQ-LDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQK 401
V++ LD+ L+ +L + + +E+ + L G++ L Q + LSGG++
Sbjct: 86 ALIENETVEENLDLGLKYKKLSK----KEKREKKKEALEKVGLNLKLK-QKIYELSGGEQ 140
Query: 402 SRVAFARMCMAAPNFLVLDEPTNHLDIET 430
RVA AR + P ++ DEPT LD +
Sbjct: 141 QRVALARAILKPPPLILADEPTGSLDPKN 169
>gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the
histidine and glutamine transporters. HisP and GlnQ are
the ATP-binding components of the bacterial periplasmic
histidine and glutamine permeases, respectively.
Histidine permease is a multi-subunit complex containing
the HisQ and HisM integral membrane subunits and two
copies of HisP. HisP has properties intermediate between
those of integral and peripheral membrane proteins and
is accessible from both sides of the membrane,
presumably by its interaction with HisQ and HisM. The
two HisP subunits form a homodimer within the complex.
The domain structure of the amino acid uptake systems is
typical for prokaryotic extracellular solute binding
protein-dependent uptake systems. All of the amino acid
uptake systems also have at least one, and in a few
cases, two extracellular solute binding proteins located
in the periplasm of Gram-negative bacteria, or attached
to the cell membrane of Gram-positive bacteria. The
best-studied member of the PAAT (polar amino acid
transport) family is the HisJQMP system of S.
typhimurium, where HisJ is the extracellular solute
binding proteins and HisP is the ABC protein.
Length = 213
Score = 59.1 bits (144), Expect = 4e-10
Identities = 45/164 (27%), Positives = 73/164 (44%), Gaps = 25/164 (15%)
Query: 289 GKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTV--------HRNL 340
+L + L + I+G +G+GK+TLL+ I + P +GT + +N+
Sbjct: 12 DFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNI 71
Query: 341 -----KFGYFSQH-----HVDQLD---MNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGD 387
K G Q H+ L+ + V+ + A + +E L G++ D
Sbjct: 72 NELRQKVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKA---EAEERALELLEKVGLA-D 127
Query: 388 LALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETI 431
A + LSGGQ+ RVA AR P ++ DEPT+ LD E +
Sbjct: 128 KADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELV 171
>gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 252
Score = 59.6 bits (145), Expect = 5e-10
Identities = 47/172 (27%), Positives = 82/172 (47%), Gaps = 23/172 (13%)
Query: 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRT 335
++ + V+ Y K +L +V L I+G NGAGK+TLL ++ ++ +G T
Sbjct: 1 MITIENVSKSY-GTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEIT 59
Query: 336 VH-RNLKFGYFSQ---------HHVDQLDMNLRCVQLLE-AAFP---GKPQEEYRRQLGG 381
+ L S+ + ++ L L+ FP G+ +E RR +
Sbjct: 60 IDGLELT-STPSKELAKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINE 118
Query: 382 ----FGVSGDLALQFVGSLSGGQKSRVAFARMCMAA-PNFLVLDEPTNHLDI 428
+ DL+ +++ LSGGQ+ R AF M +A ++++LDEP N+LD+
Sbjct: 119 AIEYLHLE-DLSDRYLDELSGGQRQR-AFIAMVLAQDTDYVLLDEPLNNLDM 168
>gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter
membrane\ATP-binding components; Provisional.
Length = 592
Score = 60.9 bits (148), Expect = 5e-10
Identities = 55/204 (26%), Positives = 80/204 (39%), Gaps = 47/204 (23%)
Query: 267 PDTELLSPPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGI 326
D L + + V+F Y +L N+ L + +VG G+GK+TL ++MG
Sbjct: 331 NDDRPLQSGRIDIDNVSFAYRDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGY 390
Query: 327 ISPTAGT-----RTV----HRNLKFGY-----------------------FSQHHVDQLD 354
T G R + H L+ G S+ V Q
Sbjct: 391 YPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGRDISEEQVWQA- 449
Query: 355 MNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAP 414
L VQL E A P Y LG G +LS GQK +A AR+ + P
Sbjct: 450 --LETVQLAELA-RSLPDGLYTP-LGEQG----------NNLSVGQKQLLALARVLVQTP 495
Query: 415 NFLVLDEPTNHLDIETIEALGKAI 438
L+LDE T ++D T +A+ +A+
Sbjct: 496 QILILDEATANIDSGTEQAIQQAL 519
>gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 204
Score = 58.3 bits (142), Expect = 6e-10
Identities = 48/151 (31%), Positives = 68/151 (45%), Gaps = 35/151 (23%)
Query: 308 IVGDNGAGKTTLLKIIMGIISPTAGT--------RTV----HRNLKF-GYFSQHH--VDQ 352
I G NGAGKT+LL+I+ G+ P AG R H++L + G H +
Sbjct: 32 IEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLYLG----HQPGIKT 87
Query: 353 L---DMNLRCVQLLEAAFPGKPQEEYRRQ-LGGFGVSG--DLALQFVGSLSGGQKSRVAF 406
NLR Q G +E + L G++G D+ V LS GQ+ RVA
Sbjct: 88 ELTALENLRFYQ----RLHGPGDDEALWEALAQVGLAGFEDVP---VRQLSAGQQRRVAL 140
Query: 407 ARMCMAAPNFLVLDEPTNHLD---IETIEAL 434
AR+ + +LDEP +D + +EAL
Sbjct: 141 ARLWLTRAPLWILDEPFTAIDKQGVARLEAL 171
>gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the
molybdate transporter. Archaeal protein closely related
to ModC. ModC is an ABC-type transporter and the ATPase
component of a molybdate transport system that also
includes the periplasmic binding protein ModA and the
membrane protein ModB. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 235
Score = 58.9 bits (143), Expect = 6e-10
Identities = 42/155 (27%), Positives = 62/155 (40%), Gaps = 22/155 (14%)
Query: 308 IVGDNGAGKTTLLKIIMGIISPTAG---------TRTVHRNLKFGYFSQHHVDQLDMNLR 358
I+G G+GK+ LL+ I G I P +G T Y Q++ M
Sbjct: 30 ILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDISYVPQNYALFPHMT-- 87
Query: 359 CVQ------LLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMA 412
V L + K E ++ L + +LSGG++ RVA AR +
Sbjct: 88 -VYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVV 146
Query: 413 APNFLVLDEPTNHLDIET----IEALGKAINKYTF 443
P L+LDEP + LD+ T E L K ++
Sbjct: 147 NPKILLLDEPFSALDVRTKEKLREELKKIRKEFGV 181
>gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport
systems, ATPase component [Amino acid transport and
metabolism].
Length = 250
Score = 58.7 bits (143), Expect = 8e-10
Identities = 44/169 (26%), Positives = 66/169 (39%), Gaps = 42/169 (24%)
Query: 308 IVGDNGAGKTTLLKIIMGIISPTAGT--------------RTVHR--------------- 338
++G NGAGKTTL +I G P++GT R
Sbjct: 35 LIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGIARTFQITRLFPGL 94
Query: 339 ----NLKFGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVG 394
N+ G ++ + L R + A +E R L G+ G+LA + G
Sbjct: 95 TVLENVAVGAHARLGLSGLLGRPRARKEEREA-----RERARELLEFVGL-GELADRPAG 148
Query: 395 SLSGGQKSRVAFARMCMAAPNFLVLDEPT---NHLDIETIEALGKAINK 440
+LS GQ+ R+ AR P L+LDEP N + E + L + +
Sbjct: 149 NLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRD 197
>gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 267
Score = 59.1 bits (143), Expect = 8e-10
Identities = 45/147 (30%), Positives = 70/147 (47%), Gaps = 20/147 (13%)
Query: 301 TLESR--ICIVGDNGAGKTTLLKIIMGIISPTAGTRTVH-RNLKFGYFS----------Q 347
TL + I+G+NG+GK+TL K++ G+I PT+G ++ L FG +S Q
Sbjct: 35 TLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRMIFQ 94
Query: 348 HHVDQLDMNLRCVQLLEAAF-------PGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQ 400
L+ LR Q+L+ P + +++ L G+ D A + L+ GQ
Sbjct: 95 DPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQ 154
Query: 401 KSRVAFARMCMAAPNFLVLDEPTNHLD 427
K RVA AR + P ++ DE LD
Sbjct: 155 KQRVALARALILRPKIIIADEALASLD 181
>gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection
ABC transporter, ATP-binding subunit. Model TIGR03731
represents the family of all lantibiotics related to
gallidermin, including epidermin, mutatin, and nisin.
This protein family describes the ATP-binding subunit of
a gallidermin/epidermin class lantibiotic protection
transporter. It is largely restricted to
gallidermin-family lantibiotic biosynthesis and export
cassettes, but also occurs in orphan transporter
cassettes in species that lack candidate lantibiotic
precursor and synthetase genes.
Length = 223
Score = 58.2 bits (141), Expect = 9e-10
Identities = 43/155 (27%), Positives = 61/155 (39%), Gaps = 34/155 (21%)
Query: 308 IVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDM------------ 355
++G NGAGK+TLLK+I GI+ PT+G F H + D+
Sbjct: 31 LLGPNGAGKSTLLKMITGILRPTSGEI---------IFDGHPWTRKDLHKIGSLIESPPL 81
Query: 356 --------NLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFA 407
NL+ L G P L + + + S G K R+ A
Sbjct: 82 YENLTARENLKVHTTLL----GLPDSRIDEVLNIVDL-TNTGKKKAKQFSLGMKQRLGIA 136
Query: 408 RMCMAAPNFLVLDEPTNHLDIETIEALGKAINKYT 442
+ P L+LDEPTN LD I+ L + I +
Sbjct: 137 IALLNHPKLLILDEPTNGLDPIGIQELRELIRSFP 171
>gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 325
Score = 59.3 bits (144), Expect = 1e-09
Identities = 42/157 (26%), Positives = 66/157 (42%), Gaps = 22/157 (14%)
Query: 304 SRICIVGDNGAGKTTLLKIIMGIISPTAGTRTV--------------HRNLKFGYFSQHH 349
+ +G NGAGK+T LK++ G++ PT+G V L G Q
Sbjct: 51 EIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLW 110
Query: 350 VDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGF----GVSGDLALQFVGSLSGGQKSRVA 405
D L +++L+ + P +E+ +L + G L V LS GQ+ R
Sbjct: 111 WDL--PALDSLEVLKLIYE-IPDDEFAERLDFLTEILDLEGFLKWP-VRKLSLGQRMRAE 166
Query: 406 FARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKYT 442
A + P L LDEPT LD+ + + + +Y
Sbjct: 167 LAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYN 203
>gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 300
Score = 58.9 bits (143), Expect = 1e-09
Identities = 39/142 (27%), Positives = 63/142 (44%), Gaps = 12/142 (8%)
Query: 308 IVGDNGAGKTTLLKIIMGIISPTAGTRTV-------HRNLKFGYFSQHHVDQLDMNLRCV 360
++G NGAGKTT ++I+G++ PT G T + GY + M +
Sbjct: 33 LLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIGYLPEERGLYPKMTVEDQ 92
Query: 361 QLLEAAFPGKPQEEYRRQLGG----FGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNF 416
A G P+ E +++L + G + + LS G + ++ F + P
Sbjct: 93 LKYLAELKGMPKAEIQKKLQAWLERLEIVGKKT-KKIKELSKGNQQKIQFISAVIHEPEL 151
Query: 417 LVLDEPTNHLDIETIEALGKAI 438
L+LDEP + LD +E L AI
Sbjct: 152 LILDEPFSGLDPVNVELLKDAI 173
>gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 288
Score = 59.0 bits (142), Expect = 1e-09
Identities = 52/176 (29%), Positives = 79/176 (44%), Gaps = 24/176 (13%)
Query: 276 ILQLSEVNFEYVPGKPILTNVCLGATLE----SRICIVGDNGAGKTTLLKIIMGIISPTA 331
+++ +VN+ Y P P + LE S ++G G+GK+TLL+ + G++ PT
Sbjct: 1 MIKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTE 60
Query: 332 GTRTVHRNLKFGYFSQHHVDQLDMNLRCV------QLLE------AAFP----GKPQEEY 375
G TV + Q + + + V QL E AF G P+E+
Sbjct: 61 GKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKA 120
Query: 376 RR----QLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD 427
+ +L G++ + + LSGGQ RVA A + P LVLDEPT LD
Sbjct: 121 EKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLD 176
Score = 30.9 bits (69), Expect = 1.4
Identities = 11/27 (40%), Positives = 20/27 (74%)
Query: 252 ELKPIEKEVEVVLKFPDTELLSPPILQ 278
E+KP+ K+V VV +FP+++L +L+
Sbjct: 78 EIKPVRKKVGVVFQFPESQLFEETVLK 104
>gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC
transporter, HlyB family. Type I protein secretion is a
system in some Gram-negative bacteria to export proteins
(often proteases) across both inner and outer membranes
to the extracellular medium. This is one of three
proteins of the type I secretion apparatus. Targeted
proteins are not cleaved at the N-terminus, but rather
carry signals located toward the extreme C-terminus to
direct type I secretion [Protein fate, Protein and
peptide secretion and trafficking].
Length = 694
Score = 60.1 bits (146), Expect = 1e-09
Identities = 51/193 (26%), Positives = 75/193 (38%), Gaps = 51/193 (26%)
Query: 277 LQLSEVNFEYVPGKP-ILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRT 335
+ + F Y P P +L+N+ L I IVG +G+GK+TL K++ + +P G
Sbjct: 456 ITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVL 515
Query: 336 VHRNLKFGYFSQHHVDQLDMN-LR---CVQLLEAAF-------------PGKPQEE--YR 376
V + D LR V L E PG P E +
Sbjct: 516 V---------DGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHA 566
Query: 377 RQLGGFGVSGDLALQFV---------------GSLSGGQKSRVAFARMCMAAPNFLVLDE 421
+L G A F+ +LSGGQ+ R+A AR + P L+ DE
Sbjct: 567 AKLAG-------AHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDE 619
Query: 422 PTNHLDIETIEAL 434
T+ LD E+ +
Sbjct: 620 ATSALDYESEALI 632
>gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA
family. Members of this protein family are found mostly
in the Cyanobacteria, but also in the Planctomycetes.
Cyanobacterial examples are involved in heterocyst
formation, by which some fraction of members of the
colony undergo a developmental change and become capable
of nitrogen fixation. The DevBCA proteins are thought
export of either heterocyst-specific glycolipids or an
enzyme essential for formation of the laminated layer
found in heterocysts.
Length = 220
Score = 57.7 bits (140), Expect = 1e-09
Identities = 54/174 (31%), Positives = 78/174 (44%), Gaps = 40/174 (22%)
Query: 279 LSEVNFEYVPGK-PILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTV- 336
L ++N E PG+ ILT G +G+GKTTLL +I G+ S G+ V
Sbjct: 21 LFDINLEINPGEIVILT---------------GPSGSGKTTLLTLIGGLRSVQEGSLKVL 65
Query: 337 ---------------HRNLKFGYFSQHH--VDQL--DMNLR-CVQLLEAAFPGKPQEEYR 376
RN+ GY Q H + L N++ ++L + +E R
Sbjct: 66 GQELYGASEKELVQLRRNI--GYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERAR 123
Query: 377 RQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIET 430
L G+ GD + +LSGGQK RVA AR + P ++ DEPT LD ++
Sbjct: 124 AMLEAVGL-GDHLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKS 176
>gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional.
Length = 590
Score = 59.8 bits (146), Expect = 1e-09
Identities = 47/150 (31%), Positives = 66/150 (44%), Gaps = 30/150 (20%)
Query: 306 ICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEA 365
I IVG NG GKTT K++ G++ P G V LK Y Q+ ++
Sbjct: 368 IGIVGPNGIGKTTFAKLLAGVLKPDEGE--VDPELKISYKPQY--------------IKP 411
Query: 366 AFPGKPQEEYRRQLGGFGVS------------GDLALQFVGSLSGGQKSRVAFARMCMAA 413
+ G ++ R G S L + V LSGG+ RVA A C++
Sbjct: 412 DYDGTVEDLLRSITDDLGSSYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIA-ACLSR 470
Query: 414 PNFL-VLDEPTNHLDIETIEALGKAINKYT 442
L +LDEP+ HLD+E A+ KAI +
Sbjct: 471 DADLYLLDEPSAHLDVEQRLAVAKAIRRIA 500
Score = 48.3 bits (116), Expect = 5e-06
Identities = 38/150 (25%), Positives = 60/150 (40%), Gaps = 37/150 (24%)
Query: 308 IVGDNGAGKTTLLKIIMGIISPTAG--TRTVHRNLKFGYFS----QHHVDQL-DMNLRCV 360
I+G NG GKTT +KI+ G + P G + F Q++ +L + ++ V
Sbjct: 104 ILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKLYNGEIKVV 163
Query: 361 QLLEAAFPGKPQ--EEYRRQLGG-----------FGVSGDLALQF---------VGSLSG 398
KPQ + + G G ++ + + LSG
Sbjct: 164 H--------KPQYVDLIPKVFKGKVRELLKKVDERGKLDEVVERLGLENILDRDISELSG 215
Query: 399 GQKSRVAFARMCMAAPNFLVLDEPTNHLDI 428
G+ RVA A + +F DEPT++LDI
Sbjct: 216 GELQRVAIAAALLRDADFYFFDEPTSYLDI 245
>gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of
peroxisomal transporter, subfamily D. Peroxisomal
ATP-binding cassette transporter (Pat) is involved in
the import of very long-chain fatty acids (VLCFA) into
the peroxisome. The peroxisomal membrane forms a
permeability barrier for a wide variety of metabolites
required for and formed during fatty acid
beta-oxidation. To communicate with the cytoplasm and
mitochondria, peroxisomes need dedicated proteins to
transport such hydrophilic molecules across their
membranes. X-linked adrenoleukodystrophy (X-ALD) is
caused by mutations in the ALD gene, which encodes ALDP
(adrenoleukodystrophy protein ), a peroxisomal integral
membrane protein that is a member of the ATP-binding
cassette (ABC) transporter protein family. The disease
is characterized by a striking and unpredictable
variation in phenotypic expression. Phenotypes include
the rapidly progressive childhood cerebral form (CCALD),
the milder adult form, adrenomyeloneuropathy (AMN), and
variants without neurologic involvement (i.e.
asymptomatic).
Length = 166
Score = 56.4 bits (137), Expect = 1e-09
Identities = 37/137 (27%), Positives = 57/137 (41%), Gaps = 40/137 (29%)
Query: 304 SRICIVGDNGAGKTTLLKIIMGIISPTAGT--RTVHRNLKF----GYFSQHHVDQLDMNL 357
R+ I G +G GK++L + + G+ +G +L F Y L
Sbjct: 28 DRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPL-------GTL 80
Query: 358 RCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFL 417
R QL +P D+ LSGG++ R+AFAR+ + P F+
Sbjct: 81 RE-QL---IYP----------------WDDV-------LSGGEQQRLAFARLLLHKPKFV 113
Query: 418 VLDEPTNHLDIETIEAL 434
LDE T+ LD E+ + L
Sbjct: 114 FLDEATSALDEESEDRL 130
>gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin
B, subfamily C. The ABC-transporter hemolysin B is a
central component of the secretion machinery that
translocates the toxin, hemolysin A, in a
Sec-independent fashion across both membranes of E.
coli. The hemolysin A (HlyA) transport machinery is
composed of the ATP-binding cassette (ABC) transporter
HlyB located in the inner membrane, hemolysin D (HlyD),
also anchored in the inner membrane, and TolC, which
resides in the outer membrane. HlyD apparently forms a
continuous channel that bridges the entire periplasm,
interacting with TolC and HlyB. This arrangement
prevents the appearance of periplasmic intermediates of
HlyA during substrate transport. Little is known about
the molecular details of HlyA transport, but it is
evident that ATP-hydrolysis by the ABC-transporter HlyB
is a necessary source of energy.
Length = 237
Score = 57.9 bits (140), Expect = 1e-09
Identities = 51/171 (29%), Positives = 70/171 (40%), Gaps = 25/171 (14%)
Query: 282 VNFEYVPGKP-ILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN- 339
V F Y P P IL N+ L + IVG +G+GK+TL K+I P G V +
Sbjct: 6 VRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHD 65
Query: 340 ----------LKFGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQE---EYRRQLGGFGVSG 386
+ G Q + + N + A PG E E + G
Sbjct: 66 LALADPAWLRRQVGVVLQ---ENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFIS 122
Query: 387 DLAL---QFVG----SLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIET 430
+L VG LSGGQ+ R+A AR + P L+ DE T+ LD E+
Sbjct: 123 ELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYES 173
>gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 287
Score = 58.3 bits (141), Expect = 2e-09
Identities = 53/176 (30%), Positives = 80/176 (45%), Gaps = 26/176 (14%)
Query: 277 LQLSEVNFEYVPGKPI----LTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAG 332
++ V++ Y PG P+ L N+ S + +VG G+GK+TL++ ++ P++G
Sbjct: 3 IKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSG 62
Query: 333 T----------RTVHRNLK-----FGYFSQHHVDQLDMN--LRCVQLLEAAFPGKPQEEY 375
T T ++NLK Q QL N L+ V+ F G ++E
Sbjct: 63 TITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNF-GFSEDEA 121
Query: 376 RRQ----LGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD 427
+ + L G+S DL + LSGGQ RVA A + P L LDEP LD
Sbjct: 122 KEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLD 177
>gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of
the sulfate transporter. Part of the ABC transporter
complex cysAWTP involved in sulfate import. Responsible
for energy coupling to the transport system. The complex
is composed of two ATP-binding proteins (cysA), two
transmembrane proteins (cysT and cysW), and a
solute-binding protein (cysP). ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 239
Score = 57.7 bits (140), Expect = 2e-09
Identities = 41/139 (29%), Positives = 62/139 (44%), Gaps = 18/139 (12%)
Query: 306 ICIVGDNGAGKTTLLKIIMGIISPTAGTRTVH---------RNLKFGYFSQHHV------ 350
+ ++G +G+GKTTLL++I G+ P +GT + G+ QH+
Sbjct: 31 VALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFVFQHYALFRHMT 90
Query: 351 --DQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFAR 408
D + LR E + + + L + LA ++ LSGGQ+ RVA AR
Sbjct: 91 VFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDW-LADRYPAQLSGGQRQRVALAR 149
Query: 409 MCMAAPNFLVLDEPTNHLD 427
P L+LDEP LD
Sbjct: 150 ALAVEPKVLLLDEPFGALD 168
>gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 269
Score = 57.5 bits (139), Expect = 3e-09
Identities = 48/198 (24%), Positives = 78/198 (39%), Gaps = 48/198 (24%)
Query: 275 PILQLSEVNFEYVPGKPI-LTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGT 333
I+ V+F+Y L +V IVG NG+GK+T+ K+++GI +G
Sbjct: 6 SIIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGE 65
Query: 334 RTVHRNLKFGYFSQHHVDQLDM-NLR-----CVQLLEAAFPGK---------------PQ 372
+++ + + LR Q + F G P
Sbjct: 66 I---------FYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPY 116
Query: 373 EEYRRQLGGFGVSGDLALQFVG----------SLSGGQKSRVAFARMCMAAPNFLVLDEP 422
+E R++ AL+ V +LSGGQK RVA A + P+ ++LDE
Sbjct: 117 DEMHRRVSE-------ALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEA 169
Query: 423 TNHLDIETIEALGKAINK 440
T+ LD + + L + K
Sbjct: 170 TSMLDPDARQNLLDLVRK 187
>gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 280
Score = 57.4 bits (139), Expect = 3e-09
Identities = 54/176 (30%), Positives = 73/176 (41%), Gaps = 26/176 (14%)
Query: 277 LQLSEVNFEYVPGKPILTNVCLGATLE----SRICIVGDNGAGKTTLLKIIMGIISPTAG 332
+ L V++ Y G P L S +G G+GK+T+++++ G+ PT G
Sbjct: 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQG 62
Query: 333 TRTVHRNL---------------KFGYFSQHHVDQL--DMNLRCVQLLEAAFPGKPQEEY 375
+ V L K G Q QL + L+ V F G QEE
Sbjct: 63 SVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFEETVLKDVAFGPQNF-GVSQEEA 121
Query: 376 ----RRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD 427
R +L G+S L + LSGGQ RVA A + P LVLDEPT LD
Sbjct: 122 EALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLD 177
>gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 275
Score = 57.4 bits (139), Expect = 3e-09
Identities = 53/187 (28%), Positives = 77/187 (41%), Gaps = 53/187 (28%)
Query: 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRT 335
IL+ ++ + Y G L + A + ++G NGAGK+TL GI+ PT+G
Sbjct: 1 ILETRDLKYSYPDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVL 60
Query: 336 VHRN-LKF------------GYFSQHHVDQL------------DMNLRCVQLLEAAFPGK 370
+ +K+ G Q+ DQL +NL G
Sbjct: 61 IKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNL-----------GL 109
Query: 371 PQEEYRRQLGGFGVSGDLALQFVG----------SLSGGQKSRVAFARMCMAAPNFLVLD 420
+EE +++ AL+ VG LSGGQK RVA A + P +VLD
Sbjct: 110 SKEEVEKRVKE-------ALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLD 162
Query: 421 EPTNHLD 427
EPT+ LD
Sbjct: 163 EPTSGLD 169
>gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 274
Score = 57.3 bits (138), Expect = 3e-09
Identities = 52/190 (27%), Positives = 84/190 (44%), Gaps = 34/190 (17%)
Query: 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRT 335
+++L V++ Y G P L N+ L I I+G NG+GK+TL + G++ P G +
Sbjct: 1 MIRLENVSYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKG-KV 59
Query: 336 VHRNLKFGYFSQHHVDQLDMNLRCVQLLEAAFPGK---------------PQEEYRRQLG 380
+ + G FS+ + + + Q E F G+ P E R+++
Sbjct: 60 LVSGIDTGDFSKLQGIRKLVGI-VFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRV- 117
Query: 381 GFGVSGDLALQFVG----------SLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIET 430
D AL +G +LSGGQ VA A + P L+ DE T+ LD ++
Sbjct: 118 ------DRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDS 171
Query: 431 IEALGKAINK 440
A+ + I K
Sbjct: 172 GIAVLERIKK 181
>gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a
mitochondrial protein MTABC3 and related proteins.
MTABC3 (also known as ABCB6) is a mitochondrial
ATP-binding cassette protein involved in iron
homeostasis and one of four ABC transporters expressed
in the mitochondrial inner membrane, the other three
being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast
MDL1 (multidrug resistance-like protein 1) and MDL2
(multidrug resistance-like protein 2) transporters are
also included in this CD. MDL1 is an ATP-dependent
permease that acts as a high-copy suppressor of ATM1 and
is thought to have a role in resistance to oxidative
stress. Interestingly, subfamily B is more closely
related to the carboxyl-terminal component of subfamily
C than the two halves of ABCC molecules are with one
another.
Length = 238
Score = 56.8 bits (138), Expect = 3e-09
Identities = 53/201 (26%), Positives = 82/201 (40%), Gaps = 58/201 (28%)
Query: 279 LSEVNFEYV--PGKPILTNVCL----GATLESRICIVGDNGAGKTTLLKIIMGIISPTAG 332
V+F Y P PIL + L G T + +VG +G GK+T++ ++ PT+G
Sbjct: 3 FKNVSFRYPSRPDVPILKGLSLTIPPGKT----VALVGSSGCGKSTVVSLLERFYDPTSG 58
Query: 333 TRTVH----RNL-------KFGYFSQHHVDQLDMNLR-----------CVQLLEAA---- 366
+ R+L + G SQ V D + ++ EAA
Sbjct: 59 EILLDGVDIRDLNLRWLRSQIGLVSQEPV-LFDGTIAENIRYGKPDATDEEVEEAAKKAN 117
Query: 367 -------FPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVL 419
P Y +G G LSGGQK R+A AR + P L+L
Sbjct: 118 IHDFIMSLPDG----YDTLVGERG----------SQLSGGQKQRIAIARALLRNPKILLL 163
Query: 420 DEPTNHLDIETIEALGKAINK 440
DE T+ LD E+ + + +A+++
Sbjct: 164 DEATSALDAESEKLVQEALDR 184
>gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport
system, ATPase component [Carbohydrate transport and
metabolism / Cell envelope biogenesis, outer membrane].
Length = 249
Score = 56.5 bits (137), Expect = 4e-09
Identities = 41/146 (28%), Positives = 60/146 (41%), Gaps = 12/146 (8%)
Query: 283 NFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKF 342
V L ++ R+ I+G NGAGK+TLLK+I GI PT+G V +
Sbjct: 33 GGRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAP 92
Query: 343 GY-FSQHHVDQLDMNL---RCVQLLEAAFPGKPQEEYRRQLG---GFGVSGDLALQFVGS 395
D L + L G ++E ++ F GD Q V +
Sbjct: 93 LIELGA----GFDPELTGRENIYLR-GLILGLTRKEIDEKVDEIIEFAELGDFIDQPVKT 147
Query: 396 LSGGQKSRVAFARMCMAAPNFLVLDE 421
S G +R+AF+ P+ L+LDE
Sbjct: 148 YSSGMYARLAFSVATHVEPDILLLDE 173
>gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein.
This model describes the energy-transducing ATPase
subunit ThiQ of the ThiBPQ thiamine (and thiamine
pyrophosphate) ABC transporter in several
Proteobacteria. This protein is found so far only in
Proteobacteria, and is found in complete genomes only if
the ThiB and ThiP subunits are also found [Transport and
binding proteins, Other].
Length = 213
Score = 56.0 bits (135), Expect = 4e-09
Identities = 44/142 (30%), Positives = 61/142 (42%), Gaps = 26/142 (18%)
Query: 305 RICIVGDNGAGKTTLLKIIMGIISPTAG---------TRTVHRNLKFGYFSQHHVDQLDM 355
+ I+G +GAGK+TLL +I G I P +G T Q + L
Sbjct: 26 IVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQEN--NLFA 83
Query: 356 NLRCVQ---------LLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAF 406
+L Q L A + + +Q+G D + LSGGQ+ RVA
Sbjct: 84 HLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVG----IADYLDRLPEQLSGGQRQRVAL 139
Query: 407 ARMCMAAPN-FLVLDEPTNHLD 427
AR C+ PN L+LDEP + LD
Sbjct: 140 AR-CLVRPNPILLLDEPFSALD 160
>gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system,
component A2. The enzyme that catalyzes the final step
in methanogenesis, methyl coenzyme M reductase, contains
alpha, beta, and gamma chains. In older literature, the
complex of alpha, beta, and gamma chains was termed
component C, while this single chain protein was termed
methyl coenzyme M reductase system component A2 [Energy
metabolism, Methanogenesis].
Length = 520
Score = 57.9 bits (140), Expect = 4e-09
Identities = 63/231 (27%), Positives = 95/231 (41%), Gaps = 52/231 (22%)
Query: 245 KQLERLPELKPIEKEVEVVLKFPDTELLSPPILQLSEVNFEYVPGKPILTNVCLGATLES 304
+E + E++ E EVEV PI+++ V+ Y+ + +LE
Sbjct: 259 VFMEGVSEVEK-ECEVEV----------GEPIIKVRNVSKRYISVDRGVVKAVDNVSLEV 307
Query: 305 R----ICIVGDNGAGKTTLLKIIMGIISPTAGTRTVH-----------------RNLKF- 342
+ IVG +GAGKTTL KII G++ PT+G V R ++
Sbjct: 308 KEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYI 367
Query: 343 GYFSQH-----HVDQLDMNLRCVQLLEAAFPGKPQEEYRRQ----LGGFGVSGDLAL--- 390
G Q H LD L EA P E R + L G + A
Sbjct: 368 GILHQEYDLYPHRTVLD------NLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEIL 421
Query: 391 -QFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINK 440
++ LS G++ RVA A++ + P ++LDEPT +D T + +I K
Sbjct: 422 DKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILK 472
Score = 41.3 bits (97), Expect = 8e-04
Identities = 18/45 (40%), Positives = 25/45 (55%)
Query: 396 LSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINK 440
LSGG+K RV AR P + DEPT LD +T + + A+ +
Sbjct: 169 LSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEE 213
>gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 352
Score = 57.4 bits (139), Expect = 4e-09
Identities = 46/171 (26%), Positives = 70/171 (40%), Gaps = 31/171 (18%)
Query: 281 EVNFEYVPGKPILTNVCLGATLES---RIC-IVGDNGAGKTTLLKIIMGIISPTAGT--- 333
E+NF L N L A I + G +G+GKT+L+ +I G+ P G
Sbjct: 3 ELNFRQR-----LGNFALDANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIEL 57
Query: 334 --RTVH---RNL-------KFGYFSQHHVDQLDMNLRCVQLLE--AAFPGKPQEEYRRQL 379
R + + + + GY Q +L + L + Q + L
Sbjct: 58 NGRVLVDAEKGIFLPPEKRRIGYVFQDA--RLFPHYTVRGNLRYGMWKSMRAQFDQLVAL 115
Query: 380 GGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIET 430
G L ++ G+LSGG+K RVA R + AP L++DEP LD+
Sbjct: 116 LGIE---HLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPR 163
>gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems,
ATPase components [General function prediction only].
Length = 501
Score = 57.9 bits (141), Expect = 4e-09
Identities = 38/151 (25%), Positives = 64/151 (42%), Gaps = 20/151 (13%)
Query: 307 CIVGDNGAGKTTLLKIIMGIISPTAGT-----RTVH-------RNLKFGYFSQHH--VDQ 352
++G+NGAGK+TL+KI+ G+ P +G + V L G QH V
Sbjct: 34 ALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFMLVPT 93
Query: 353 LDM--NLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLAL---QFVGSLSGGQKSRVAFA 407
L + N+ + L + + + R ++ L + V LS G++ RV
Sbjct: 94 LTVAENI-ILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEIL 152
Query: 408 RMCMAAPNFLVLDEPTNHLDIETIEALGKAI 438
+ L+LDEPT L + + L + +
Sbjct: 153 KALYRGARLLILDEPTAVLTPQEADELFEIL 183
Score = 41.8 bits (99), Expect = 6e-04
Identities = 17/57 (29%), Positives = 27/57 (47%)
Query: 382 FGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAI 438
F V SLSGG + ++ AR P+ L+ +PT LD+ IE + + +
Sbjct: 390 FDVRAPSPDAPARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERL 446
>gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter;
Provisional.
Length = 588
Score = 58.0 bits (141), Expect = 5e-09
Identities = 46/206 (22%), Positives = 79/206 (38%), Gaps = 57/206 (27%)
Query: 278 QLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGT---- 333
+ +V+F Y + + +V A + IVG GAGK+TL+ ++ + P +G
Sbjct: 336 EFDDVSFSYDNSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILID 395
Query: 334 ---------------------------RTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEAA 366
R++ N++ G + + AA
Sbjct: 396 GTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRPDATDEE----------MRAAA 445
Query: 367 FPGKPQEEYRRQLGGFGVSGDLALQFVG----SLSGGQKSRVAFARMCMAAPNFLVLDEP 422
+ + R+ G+ VG LSGG++ R+A AR + P L+LDE
Sbjct: 446 ERAQAHDFIERKPDGYDT-------VVGERGRQLSGGERQRLAIARALLKDPPILILDEA 498
Query: 423 TNHLDIETIEALGKAI-----NKYTF 443
T+ LD+ET + A+ + TF
Sbjct: 499 TSALDVETEAKVKAALDELMKGRTTF 524
>gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 271
Score = 56.5 bits (137), Expect = 5e-09
Identities = 44/181 (24%), Positives = 79/181 (43%), Gaps = 34/181 (18%)
Query: 272 LSPPILQLSEVNFEYVPG-KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPT 330
++++ V+F Y L NV + I+G NG+GK+T+ KI+ G++ P
Sbjct: 3 NKSVMIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQ 62
Query: 331 AGTRTVHRNLKFGY-FSQHHVDQLDMNLRCV------QLLEA------AF--------PG 369
+G + G S+ ++ ++ + + Q + A AF P
Sbjct: 63 SGEIKI-----DGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPK 117
Query: 370 KPQ---EEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHL 426
K + ++ +++G D + +LSGGQK RVA A + P ++ DE T+ L
Sbjct: 118 KMKDIIDDLAKKVG----MEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSML 173
Query: 427 D 427
D
Sbjct: 174 D 174
>gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine
transporter. PotA is an ABC-type transporter and the
ATPase component of the
spermidine/putrescine-preferential uptake system
consisting of PotA, -B, -C, and -D. PotA has two domains
with the N-terminal domain containing the ATPase
activity and the residues required for homodimerization
with PotA and heterdimerization with PotB. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 232
Score = 56.1 bits (136), Expect = 5e-09
Identities = 42/149 (28%), Positives = 64/149 (42%), Gaps = 42/149 (28%)
Query: 306 ICIVGDNGAGKTTLLKIIMGIISPTAGTRTVH-RNL--------KFGYFSQH-----HVD 351
++G +G GKTTLL++I G +PT+G + +++ Q+ H+
Sbjct: 29 FTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVNTVFQNYALFPHLT 88
Query: 352 QLDMNLRCVQLLEAAFP----GKPQEEYRR---------QLGGFGVSGDLALQFVGSLSG 398
+ N+ AF P+ E + QL G+ A + LSG
Sbjct: 89 VFE-NI--------AFGLRLKKLPKAEIKERVAEALDLVQLEGY------ANRKPSQLSG 133
Query: 399 GQKSRVAFARMCMAAPNFLVLDEPTNHLD 427
GQ+ RVA AR + P L+LDEP LD
Sbjct: 134 GQQQRVAIARALVNEPKVLLLDEPLGALD 162
>gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC
transporter, ATP-binding protein. Members of this
protein family are ABC transporter ATP-binding subunits,
part of a three-gene putative bacteriocin transport
operon. The other subunits include another ATP-binding
subunit (TIGR03796), which has an N-terminal leader
sequence cleavage domain, and an HlyD homolog
(TIGR03794). In a number of genomes, members of protein
families related to nitrile hydratase alpha subunit or
to nif11 have undergone paralogous family expansions,
with members possessing a putative bacteriocin cleavage
region ending with a classic Gly-Gly motif. Those sets
of putative bacteriocins, members of this protein family
and its partners TIGR03794 and TIGR03796, and
cyclodehydratase/docking scaffold fusion proteins of
thiazole/oxazole biosynthesis frequently show correlated
species distribution and co-clustering within many of
those genomes [Transport and binding proteins, Amino
acids, peptides and amines, Cellular processes,
Biosynthesis of natural products].
Length = 686
Score = 58.0 bits (141), Expect = 5e-09
Identities = 64/242 (26%), Positives = 94/242 (38%), Gaps = 75/242 (30%)
Query: 234 ANRASSVQSKIKQLERLPELKPI-EKEVEVVLKFPDTELLSPPILQLSEVNFEYVP-GKP 291
+N S+ + I ER KPI E EV D LS I ++ V F Y P G
Sbjct: 412 SNTLISILAVIPLWERA---KPILEALPEVDEAKTDPGKLSGAI-EVDRVTFRYRPDGPL 467
Query: 292 ILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVD 351
IL +V L + IVG +G+GK+TLL++++G +P +G+ ++ +
Sbjct: 468 ILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSV---------FYDGQDLA 518
Query: 352 QLDMNLRCVQLLEAAFPGKPQEEYRRQLG-----GFGVSGDL-----------------A 389
LD + RRQLG G +SG + A
Sbjct: 519 GLD-----------------VQAVRRQLGVVLQNGRLMSGSIFENIAGGAPLTLDEAWEA 561
Query: 390 LQFVG---------------------SLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDI 428
+ G +LSGGQ+ R+ AR + P L+ DE T+ LD
Sbjct: 562 ARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDN 621
Query: 429 ET 430
T
Sbjct: 622 RT 623
>gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems,
ATPase components [Amino acid transport and metabolism].
Length = 309
Score = 56.9 bits (138), Expect = 6e-09
Identities = 48/175 (27%), Positives = 77/175 (44%), Gaps = 31/175 (17%)
Query: 276 ILQLSEVNFEYVPGKPILTNVCLGATLESR--ICIVGDNGAGKTTLLKIIMGIISPTAGT 333
+++ V+ Y K + +V L T+E + ++G +G+GKTT LK+I +I PT+G
Sbjct: 1 MIEFENVSKRYG-NKKAVDDVNL--TIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGE 57
Query: 334 -------------RTVHRNLKFGYFSQHH-------VDQLDMNLRCVQLLEAAFPGKPQE 373
+ R + GY Q V + N+ V L + ++
Sbjct: 58 ILIDGEDISDLDPVELRRKI--GYVIQQIGLFPHLTVAE---NIATVPKLLGWDKERIKK 112
Query: 374 EYRRQLGGFGV-SGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD 427
L G+ + A ++ LSGGQ+ RV AR A P L++DEP LD
Sbjct: 113 RADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALD 167
>gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette
domain 2 of RNase L inhibitor. The ABC ATPase, RNase L
inhibitor (RLI), is a key enzyme in ribosomal
biogenesis, formation of translation preinitiation
complexes, and assembly of HIV capsids. RLI's are not
transport proteins and thus cluster with a group of
soluble proteins that lack the transmembrane components
commonly found in other members of the family.
Structurally, RLI's have an N-terminal Fe-S domain and
two nucleotide-binding domains which are arranged to
form two composite active sites in their interface
cleft. RLI is one of the most conserved enzymes between
archaea and eukaryotes with a sequence identity of more
than 48%. The high degree of evolutionary conservation
suggests that RLI performs a central role in archaeal
and eukaryotic physiology.
Length = 246
Score = 56.3 bits (136), Expect = 6e-09
Identities = 37/150 (24%), Positives = 63/150 (42%), Gaps = 30/150 (20%)
Query: 306 ICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEA 365
I I+G NG GKTT +K++ G++ P G + + Y Q+ ++A
Sbjct: 28 IGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELD-TVSYKPQY--------------IKA 72
Query: 366 AFPGKPQEEYRRQLGGFGVSG-------------DLALQFVGSLSGGQKSRVAFARMCMA 412
+ G ++ F + + V LSGG+ RVA A C++
Sbjct: 73 DYEGTVRDLLSSITKDFYTHPYFKTEIAKPLQIEQILDREVPELSGGELQRVAIA-ACLS 131
Query: 413 AP-NFLVLDEPTNHLDIETIEALGKAINKY 441
+ +LDEP+ +LD+E K I ++
Sbjct: 132 KDADIYLLDEPSAYLDVEQRLMASKVIRRF 161
>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter. This
model describes the photoreceptor protein (rim protein)
in eukaryotes. It is the member of ABC transporter
superfamily. Rim protein is a membrane glycoprotein which
is localized in the photoreceptor outer segment discs.
Mutation/s in its genetic loci is implicated in the
recessive Stargardt's disease [Transport and binding
proteins, Other].
Length = 2272
Score = 57.7 bits (139), Expect = 8e-09
Identities = 53/173 (30%), Positives = 80/173 (46%), Gaps = 28/173 (16%)
Query: 276 ILQLSEVNFEYVPG--KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGT 333
IL+L+E+ Y G P + +C+G ++G NGAGKTT K++ G + T+G
Sbjct: 1937 ILRLNELTKVY-SGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGD 1995
Query: 334 RT------------VHRNLKFGYFSQHH-VDQLDMNLRCVQLLEAAFPGKPQEEYRR--- 377
T VH+N+ GY Q +D L + R L A G P EE +
Sbjct: 1996 ATVAGKSILTNISDVHQNM--GYCPQFDAIDDL-LTGREHLYLYARLRGVPAEEIEKVAN 2052
Query: 378 ---QLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD 427
Q G + D + G+ SGG K +++ A + P ++LDEPT +D
Sbjct: 2053 WSIQSLGLSLYAD---RLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMD 2102
Score = 51.2 bits (122), Expect = 1e-06
Identities = 43/141 (30%), Positives = 66/141 (46%), Gaps = 18/141 (12%)
Query: 303 ESRI-CIVGDNGAGKTTLLKIIMGIISPTAGT-----RTVHRNL-----KFGYFSQHHVD 351
E++I +G NGAGKTT L I+ G++ PT+GT + + NL G QH++
Sbjct: 955 ENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSLGMCPQHNIL 1014
Query: 352 QLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQF-----VGSLSGGQKSRVAF 406
+ + L A G+ EE QL + D L LSGG + +++
Sbjct: 1015 FHHLTVAEHILFYAQLKGRSWEE--AQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSV 1072
Query: 407 ARMCMAAPNFLVLDEPTNHLD 427
A + +VLDEPT+ +D
Sbjct: 1073 AIAFVGDAKVVVLDEPTSGVD 1093
>gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding
protein. This model represents the ATP-binding cassette
(ABC) protein of the three subunit molybdate ABC
transporter. The three proteins of this complex are
homologous to proteins of the sulfate ABC transporter.
Molybdenum may be used in nitrogenases of
nitrogen-fixing bacteria and in molybdopterin cofactors.
In some cases, molybdate may be transported by a sulfate
transporter rather than by a specific molybdate
transporter [Transport and binding proteins, Anions].
Length = 354
Score = 56.7 bits (137), Expect = 9e-09
Identities = 44/164 (26%), Positives = 63/164 (38%), Gaps = 36/164 (21%)
Query: 293 LTNVCLGATLES----RICIVGDNGAGKTTLLKIIMGIISPTAGT--------------- 333
L + L A I G +G+GKTTL+++I G+ P G
Sbjct: 9 LGDFSLDADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGI 68
Query: 334 -RTVHRNLKFGY-------FSQHHVDQLDMNLRC-VQLLEAAFPGKPQEEYRRQLGGFGV 384
+ + GY F V NLR ++ + E LG
Sbjct: 69 FLPPEKR-RIGYVFQEARLFPHLSVRG---NLRYGMKRARPSERRISFERVIELLG---- 120
Query: 385 SGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDI 428
G L + G LSGG+K RVA R +++P L++DEP LD
Sbjct: 121 IGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDD 164
>gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of
the osmoprotectant transporter. OpuCA is a the ATP
binding component of a bacterial solute transporter that
serves a protective role to cells growing in a
hyperosmolar environment. ABC (ATP-binding cassette)
transporter nucleotide-binding domain; ABC transporters
are a large family of proteins involved in the transport
of a wide variety of different compounds, like sugars,
ions, peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition, to the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 242
Score = 55.4 bits (134), Expect = 1e-08
Identities = 50/182 (27%), Positives = 78/182 (42%), Gaps = 32/182 (17%)
Query: 277 LQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTV 336
++ V Y GK + N+ L + ++G +G+GKTT +K+I +I PT+G +
Sbjct: 1 IEFENVTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFI 60
Query: 337 -------------HRNLKF-----GYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRR- 377
R + + G F V++ N+ V L P+E+ R
Sbjct: 61 DGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEE---NIALVPKLL----KWPKEKIRER 113
Query: 378 -----QLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIE 432
L G + A ++ LSGGQ+ RV AR A P L++DEP LD T +
Sbjct: 114 ADELLALVGLD-PAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRD 172
Query: 433 AL 434
L
Sbjct: 173 QL 174
>gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit;
Provisional.
Length = 257
Score = 55.1 bits (133), Expect = 1e-08
Identities = 43/138 (31%), Positives = 68/138 (49%), Gaps = 18/138 (13%)
Query: 306 ICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHV-DQLDMNLRCVQLLE 364
+ +VG +G GK+TLL+++ G+ +P+AG L G + + + +LL
Sbjct: 41 VAVVGRSGCGKSTLLRLLAGLETPSAGE------LLAGTAPLAEAREDTRLMFQDARLLP 94
Query: 365 ---------AAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPN 415
G+ ++ + L G++ D A ++ +LSGGQK RVA AR + P
Sbjct: 95 WKKVIDNVGLGLKGQWRDAALQALAAVGLA-DRANEWPAALSGGQKQRVALARALIHRPG 153
Query: 416 FLVLDEPTNHLDIET-IE 432
L+LDEP LD T IE
Sbjct: 154 LLLLDEPLGALDALTRIE 171
>gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase
component [General function prediction only].
Length = 249
Score = 55.0 bits (133), Expect = 1e-08
Identities = 35/141 (24%), Positives = 54/141 (38%), Gaps = 24/141 (17%)
Query: 307 CIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNL-----------------KF---GYFS 346
++G NGAGKTTL+ +I G P G + KF F
Sbjct: 35 VLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAGIGRKFQKPTVFE 94
Query: 347 QHHV-DQLDMNLRCVQLLEAAFPGKPQEEYRRQLGG-FGVSGDLALQFV--GSLSGGQKS 402
V + L++ L + + A+ + + E RR++ G + LS GQK
Sbjct: 95 NLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQ 154
Query: 403 RVAFARMCMAAPNFLVLDEPT 423
+ + P L+LDEP
Sbjct: 155 WLEIGMLLAQDPKLLLLDEPV 175
>gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI;
Provisional.
Length = 340
Score = 56.0 bits (135), Expect = 1e-08
Identities = 56/182 (30%), Positives = 78/182 (42%), Gaps = 40/182 (21%)
Query: 272 LSPPILQLSEVNFEYVPGKPILTNVCLGATLESRIC--IVGDNGAGKTTLLKIIMGIISP 329
+S + L+ V+ Y K ++ L T+ S C ++G NGAGK+T+ ++I+G+ SP
Sbjct: 37 MSTVAIDLAGVSKSY-GDKAVVNG--LSFTVASGECFGLLGPNGAGKSTIARMILGMTSP 93
Query: 330 TAGTRTV----------HRNLKFGYFSQHHVDQLDM------NL----RCVQL----LEA 365
AG TV + G Q D LD+ NL R + +EA
Sbjct: 94 DAGKITVLGVPVPARARLARARIGVVPQ--FDNLDLEFTVRENLLVFGRYFGMSTREIEA 151
Query: 366 AFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNH 425
P L F A V LSGG K R+ AR + P L+LDEPT
Sbjct: 152 VIP---------SLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILDEPTTG 202
Query: 426 LD 427
LD
Sbjct: 203 LD 204
>gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation
protein NodI. This protein is required for normal
nodulation by nitrogen-fixing root nodule bacteria such
as Mesorhizobium loti. It is a member of the family of
ABC transporter ATP binding proteins and works with NodJ
to export a nodulation signal molecule. This model does
not recognize the highly divergent NodI from
Azorhizobium caulinodans [Cellular processes, Other,
Transport and binding proteins, Other].
Length = 303
Score = 55.3 bits (133), Expect = 2e-08
Identities = 54/191 (28%), Positives = 80/191 (41%), Gaps = 28/191 (14%)
Query: 273 SPPILQLSEVNFEYVPGKPILTNVCLGATLESRIC--IVGDNGAGKTTLLKIIMGIISPT 330
S + L V+ Y G ++ N L T+ C ++G NGAGK+T+ ++++G+ISP
Sbjct: 1 SNVAIDLVGVSKSY--GDKVVVND-LSFTIARGECFGLLGPNGAGKSTIARMLLGMISPD 57
Query: 331 AGTRTV----------HRNLKFGYFSQHHVDQLDMNLRCVQLLEAAFPG---KPQEEYRR 377
G TV + G Q + +R L+ + G + E
Sbjct: 58 RGKITVLGEPVPSRARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIP 117
Query: 378 QLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD---------- 427
L F A V LSGG K R+ AR + P L+LDEPT LD
Sbjct: 118 SLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWER 177
Query: 428 IETIEALGKAI 438
+ ++ A GK I
Sbjct: 178 LRSLLARGKTI 188
>gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic
fibrosis transmembrane regulator, subfamily C. The CFTR
subfamily domain 1. The cystic fibrosis transmembrane
regulator (CFTR), the product of the gene mutated in
patients with cystic fibrosis, has adapted the ABC
transporter structural motif to form a tightly regulated
anion channel at the apical surface of many epithelia.
Use of the term assembly of a functional ion channel
implies the coming together of subunits, or at least
smaller not-yet functional components of the active
whole. In fact, on the basis of current knowledge only
the CFTR polypeptide itself is required to form an ATP-
and protein kinase A-dependent low-conductance chloride
channel of the type present in the apical membrane of
many epithelial cells. CFTR displays the typical
organization (IM-ABC)2 and carries a characteristic
hydrophilic R-domain that separates IM1-ABC1 from
IM2-ABC2.
Length = 282
Score = 54.9 bits (132), Expect = 2e-08
Identities = 45/167 (26%), Positives = 70/167 (41%), Gaps = 46/167 (27%)
Query: 289 GKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGT--------------- 333
G P+L N+ L + I G G+GKT+LL +I+G + P+ G
Sbjct: 49 GAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGRISFSSQFSW 108
Query: 334 ---RTVHRNLKFG-------YFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFG 383
T+ N+ FG Y S QL+ ++ FP E+ LG G
Sbjct: 109 IMPGTIKENIIFGVSYDEYRYKSVVKACQLEEDI-------TKFP----EKDNTVLGEGG 157
Query: 384 VSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIET 430
++ LSGGQ++R++ AR + +LD P +LD+ T
Sbjct: 158 IT----------LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFT 194
>gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of
multidrug resistance-associated protein. The ABC
subfamily C is also known as MRP (multidrug
resistance-associated protein). Some of the MRP members
have five additional transmembrane segments in their
N-terminus, but the function of these additional
membrane-spanning domains is not clear. The MRP was
found in the multidrug-resistance lung cancer cell in
which p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions, such as
glutathione, glucuronate, and sulfate.
Length = 221
Score = 54.0 bits (131), Expect = 2e-08
Identities = 44/190 (23%), Positives = 71/190 (37%), Gaps = 46/190 (24%)
Query: 281 EVNFEYVPG-KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGT------ 333
V+ Y P P+L N+ ++ IVG G+GK++LL + ++ ++G+
Sbjct: 7 NVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGV 66
Query: 334 ----------R---------------TVHRNLKFGYFSQHHVDQLDMNLRCVQLLEAAFP 368
R T+ NL F ++ ++L L V L E
Sbjct: 67 DISKIGLHDLRSRISIIPQDPVLFSGTIRSNLDP--FGEYSDEELWQALERVGLKEFVES 124
Query: 369 GKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDI 428
+ + GG +LS GQ+ + AR + LVLDE T +D
Sbjct: 125 LPGGLDTVVEEGG------------ENLSVGQRQLLCLARALLRKSKILVLDEATASVDP 172
Query: 429 ETIEALGKAI 438
ET + K I
Sbjct: 173 ETDALIQKTI 182
>gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding
protein SapF; Provisional.
Length = 267
Score = 54.4 bits (131), Expect = 3e-08
Identities = 48/151 (31%), Positives = 68/151 (45%), Gaps = 26/151 (17%)
Query: 301 TLESR--ICIVGDNGAGKTTLLKIIMGIISPTAGTRTVH-RNLKFG---YFSQ------- 347
TL + I+G+NG+GK+TL K++ G+I PT+G + L FG Y SQ
Sbjct: 35 TLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSYRSQRIRMIFQ 94
Query: 348 ---------HHVDQ-LDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLS 397
+ Q LD LR LE K E RQ+ G+ D A + L+
Sbjct: 95 DPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQV---GLLPDHASYYPHMLA 151
Query: 398 GGQKSRVAFARMCMAAPNFLVLDEPTNHLDI 428
GQK R+ AR + P ++ DE LD+
Sbjct: 152 PGQKQRLGLARALILRPKVIIADEALASLDM 182
>gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette
domain of the phosphate transport system. Phosphate
uptake is of fundamental importance in the cell
physiology of bacteria because phosphate is required as
a nutrient. The Pst system of E. coli comprises four
distinct subunits encoded by the pstS, pstA, pstB, and
pstC genes. The PstS protein is a phosphate-binding
protein located in the periplasmic space. PstA and PstC
are hydrophobic and they form the transmembrane portion
of the Pst system. PstB is the catalytic subunit, which
couples the energy of ATP hydrolysis to the import of
phosphate across cellular membranes through the Pst
system, often referred as ABC-protein. PstB belongs to
one of the largest superfamilies of proteins
characterized by a highly conserved adenosine
triphosphate (ATP) binding cassette (ABC), which is also
a nucleotide binding domain (NBD).
Length = 227
Score = 53.7 bits (130), Expect = 3e-08
Identities = 43/208 (20%), Positives = 72/208 (34%), Gaps = 58/208 (27%)
Query: 277 LQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTR-- 334
++L ++N Y L ++ L ++G +G GK+TLL+++ + G
Sbjct: 1 IELRDLNVYYGDKH-ALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDE 59
Query: 335 ------------------------------------TVHRNLKFGYFSQHHVDQLDMNLR 358
+++ N+ +G + +++ R
Sbjct: 60 GEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDER 119
Query: 359 CVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLV 418
+ L A E R LSGGQ+ R+ AR P L+
Sbjct: 120 VEEALRKA--ALWDEVKDRLHAL-------------GLSGGQQQRLCLARALANEPEVLL 164
Query: 419 LDEPTNHLDI---ETIEALGKAINK-YT 442
LDEPT+ LD IE L + K YT
Sbjct: 165 LDEPTSALDPISTAKIEELIAELKKEYT 192
>gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the
osmoprotectant proline/glycine betaine uptake system.
This family comprises the glycine betaine/L-proline ATP
binding subunit in bacteria and its equivalents in
archaea. This transport system belong to the larger
ATP-Binding Cassette (ABC) transporter superfamily. The
characteristic feature of these transporters is the
obligatory coupling of ATP hydrolysis to substrate
translocation. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 269
Score = 54.2 bits (131), Expect = 3e-08
Identities = 41/150 (27%), Positives = 59/150 (39%), Gaps = 40/150 (26%)
Query: 307 CIVGDNGAGKTTLLKIIMGIISPTAGT----------------RTVHRNLKFGYFSQH-- 348
I+G +G+GK+TLL+ I +I PT+G R + R K Q
Sbjct: 54 VIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRK-KISMVFQSFA 112
Query: 349 ---HVDQLDMNLRCVQLLEAAFP----GKPQEEYRR----QLGGFGVSGDLALQFVGSLS 397
H L+ AF G P+ E L G+ G ++ LS
Sbjct: 113 LLPHRTVLE---------NVAFGLEVQGVPRAEREERAAEALELVGLEGWEH-KYPDELS 162
Query: 398 GGQKSRVAFARMCMAAPNFLVLDEPTNHLD 427
GG + RV AR P+ L++DE + LD
Sbjct: 163 GGMQQRVGLARALAVDPDILLMDEAFSALD 192
>gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D.
This model describes the ATP binding subunits of nitrate
transport in bacteria and archaea. This protein belongs
to the ATP-binding cassette (ABC) superfamily. It is
thought that the two subunits encoded by ntrC and ntrD
form the binding surface for interaction with ATP. This
model is restricted in identifying ATP binding subunit
associated with the nitrate transport. Nitrate
assimilation is aided by other proteins derived from the
operon which among others include products of ntrA - a
regulatory protein; ntrB - a hydropbobic transmembrane
permease and narB - a reductase [Transport and binding
proteins, Anions, Transport and binding proteins,
Other].
Length = 230
Score = 53.6 bits (129), Expect = 4e-08
Identities = 44/145 (30%), Positives = 62/145 (42%), Gaps = 21/145 (14%)
Query: 306 ICIVGDNGAGKTTLLKIIMGIISPTAGTRTVH----------RNLKFGYFSQHHVDQLDM 355
I ++G +G GK+TLL +I G+ PT+G + R + F +S +
Sbjct: 14 ISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVFQNYSLLPWLTVRE 73
Query: 356 NLRCVQLLEAAFPGKPQEEYRR------QLGGFGVSGDLALQFVGSLSGGQKSRVAFARM 409
N+ ++ P + E R L G + D + G LSGG K RVA AR
Sbjct: 74 NIALA--VDRVLPDLSKSERRAIVEEHIALVGLTEAAD---KRPGQLSGGMKQRVAIARA 128
Query: 410 CMAAPNFLVLDEPTNHLDIETIEAL 434
P L+LDEP LD T L
Sbjct: 129 LSIRPKVLLLDEPFGALDALTRGNL 153
>gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease
protein; Provisional.
Length = 648
Score = 55.1 bits (133), Expect = 4e-08
Identities = 51/179 (28%), Positives = 81/179 (45%), Gaps = 31/179 (17%)
Query: 275 PILQLSEVNFEYVPGK---PILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTA 331
+L+L ++ Y G+ +L + L + IVG +G+GK+TL+ I+ + PT+
Sbjct: 3 ALLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTS 62
Query: 332 GTRTVH---------------RNLKFGY-FSQHHVDQLDMNLRCVQLLE--AAFPGKPQE 373
GT V R FG+ F ++H L +L Q +E A + G ++
Sbjct: 63 GTYRVAGQDVATLDADALAQLRREHFGFIFQRYH---LLSHLTAAQNVEVPAVYAGLERK 119
Query: 374 EYRRQ-----LGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD 427
+ R L G+ + Q LSGGQ+ RV+ AR M ++ DEPT LD
Sbjct: 120 Q-RLLRAQELLQRLGLEDRVEYQ-PSQLSGGQQQRVSIARALMNGGQVILADEPTGALD 176
>gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC
transporter, peptidase/ATP-binding protein. This
protein describes a multidomain ABC transporter subunit
that is one of three protein families associated with
some regularity with a distinctive family of putative
bacteriocins. It includes a bacteriocin-processing
peptidase domain at the N-terminus. Model TIGR03793
describes a conserved propeptide region for this
bacteriocin family, unusual because it shows obvious
homology a region of the enzyme nitrile hydratase up to
the classic Gly-Gly cleavage motif. This family is
therefore predicted to be a subunit of a bacteriocin
processing and export system characteristic to this
system that we designate NHLM, Nitrile Hydratase Leader
Microcin [Transport and binding proteins, Amino acids,
peptides and amines, Cellular processes, Biosynthesis of
natural products].
Length = 710
Score = 55.0 bits (133), Expect = 4e-08
Identities = 52/184 (28%), Positives = 80/184 (43%), Gaps = 41/184 (22%)
Query: 277 LQLSEVNFEYVP-GKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGT-- 333
++L + F Y P P++ N L R+ +VG +G+GK+T+ K++ G+ P +G
Sbjct: 478 VELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEIL 537
Query: 334 ----------RTVHRNLKFGYFSQHHVDQLDMNL-------------RCV---QLLEAAF 367
R V N S VDQ D+ L + L+ A
Sbjct: 538 FDGIPREEIPREVLAN------SVAMVDQ-DIFLFEGTVRDNLTLWDPTIPDADLVRACK 590
Query: 368 PGKPQEEYRRQLGGFGVSGDLALQFVGS-LSGGQKSRVAFARMCMAAPNFLVLDEPTNHL 426
+ + GG+ D L G+ LSGGQ+ R+ AR + P+ L+LDE T+ L
Sbjct: 591 DAAIHDVITSRPGGY----DAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSAL 646
Query: 427 DIET 430
D ET
Sbjct: 647 DPET 650
>gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit;
Provisional.
Length = 351
Score = 54.3 bits (131), Expect = 5e-08
Identities = 43/152 (28%), Positives = 67/152 (44%), Gaps = 52/152 (34%)
Query: 308 IVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLE--- 364
++G +G GKTT+L+++ G+ PT G Q +D D+ R +Q +
Sbjct: 37 LLGPSGCGKTTVLRLVAGLEKPTEG--------------QIFIDGEDVTHRSIQQRDICM 82
Query: 365 -----AAFP---------------GKPQEEYRRQ---------LGGFGVSGDLALQFVGS 395
A FP G P+EE +++ L GF ++V
Sbjct: 83 VFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFED------RYVDQ 136
Query: 396 LSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD 427
+SGGQ+ RVA AR + P L+ DEP ++LD
Sbjct: 137 ISGGQQQRVALARALILKPKVLLFDEPLSNLD 168
>gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter
subfamily G of the ATP-binding cassette superfamily.
ABCG transporters are involved in eye pigment (EP)
precursor transport, regulation of lipid-trafficking
mechanisms, and pleiotropic drug resistance (DR). DR is
a well-described phenomenon occurring in fungi and
shares several similarities with processes in bacteria
and higher eukaryotes. Compared to other members of the
ABC transporter subfamilies, the ABCG transporter family
is composed of proteins that have an ATP-binding
cassette domain at the N-terminus and a TM
(transmembrane) domain at the C-terminus.
Length = 194
Score = 52.6 bits (127), Expect = 5e-08
Identities = 42/147 (28%), Positives = 61/147 (41%), Gaps = 32/147 (21%)
Query: 289 GKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVH---RNLKFGYF 345
GK +L NV A I+G +GAGK+TLL + G + + V R L F
Sbjct: 21 GKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSF 80
Query: 346 SQH--HVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVG---SLSGGQ 400
+ +V Q D+ + + E L F LSGG+
Sbjct: 81 RKIIGYVPQDDILHPTLTVRET------------------------LMFAAKLRGLSGGE 116
Query: 401 KSRVAFARMCMAAPNFLVLDEPTNHLD 427
+ RV+ A ++ P+ L LDEPT+ LD
Sbjct: 117 RKRVSIALELVSNPSLLFLDEPTSGLD 143
>gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein. This model
describes glucan exporter ATP binding protein in
bacteria. It belongs to the larger ABC transporter
superfamily with the characteristic ATP binding motif.
The In general, this protein is in some ways implicated
in osmoregulation and suggested to participate in the
export of glucan from the cytoplasm to periplasm. The
cyclic beta-1,2-glucan in the bactrerial periplasmic
space is suggested to confer the property of high
osmolority. It has also been demonstrated that mutants
in this loci have lost functions of virulence and
motility. It is unclear as to how virulence and
osmoadaptaion are related [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 585
Score = 54.9 bits (132), Expect = 5e-08
Identities = 53/199 (26%), Positives = 83/199 (41%), Gaps = 41/199 (20%)
Query: 277 LQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAG---- 332
++ + FE+ + +V A + IVG GAGKTTL+ ++ + PT G
Sbjct: 335 VEFRHITFEFANSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILI 394
Query: 333 ----TRTVHRN----------LKFGYFSQHHVDQLDMNLRCV---QLLEAAFPGKPQEEY 375
TV R G F++ + + + ++ EAA +
Sbjct: 395 DGIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFI 454
Query: 376 RRQLGGFGVSGDLALQFVGS----LSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIET- 430
++ G+ VG LSGG++ R+A AR + LVLDE T+ LD+ET
Sbjct: 455 LKRSNGY-------DTLVGERGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETE 507
Query: 431 ------IEALGKAINKYTF 443
I+AL K N+ TF
Sbjct: 508 ARVKNAIDALRK--NRTTF 524
>gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding
protein; Provisional.
Length = 265
Score = 53.5 bits (128), Expect = 5e-08
Identities = 43/145 (29%), Positives = 68/145 (46%), Gaps = 30/145 (20%)
Query: 308 IVGDNGAGKTTLLKIIMGIISPTAG-------------TRTVHRNLKFGYFSQHHVDQLD 354
I+G NG GK+TLL+ + +++P G ++ V R + G +Q+ D
Sbjct: 38 IIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVAR--RIGLLAQNATTPGD 95
Query: 355 MNLRCVQLLEAA--FPGKP---------QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSR 403
+ VQ L A +P +P +E + + G++ LA Q V +LSGGQ+ R
Sbjct: 96 IT---VQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGIT-HLADQSVDTLSGGQRQR 151
Query: 404 VAFARMCMAAPNFLVLDEPTNHLDI 428
A + ++LDEPT LDI
Sbjct: 152 AWIAMVLAQETAIMLLDEPTTWLDI 176
>gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 274
Score = 53.6 bits (129), Expect = 6e-08
Identities = 53/181 (29%), Positives = 79/181 (43%), Gaps = 43/181 (23%)
Query: 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGT-- 333
I+++ +++F Y G L + L S+ ++G NGAGK+TLL + GI P G
Sbjct: 4 IIEVEDLHFRYKDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVK 63
Query: 334 ---RTVH-------RNLKFGYFSQHHVDQL-------DMNLRCVQLLEAAFPGKPQEEYR 376
R V+ R+ K G Q DQ+ D+ V + G ++E
Sbjct: 64 VMGREVNAENEKWVRS-KVGLVFQDPDDQVFSSTVWDDVAFGPVNM------GLDKDEVE 116
Query: 377 RQLGGFGVSGDLALQFVG----------SLSGGQKSRVAFARMCMAAPNFLVLDEPTNHL 426
R++ AL+ V LS GQK RVA A + P+ +VLDEP +L
Sbjct: 117 RRVEE-------ALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYL 169
Query: 427 D 427
D
Sbjct: 170 D 170
>gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding
subunit. This model describes the glycine
betaine/L-proline ATP binding subunit in bacteria and
its equivalents in archaea. This transport system belong
to the larger ATP-Binding Cassette (ABC) transporter
superfamily. The characteristic feature of these
transporter is the obligatory coupling of ATP hydrolysis
to substrate translocation. The minimal configuration of
bacterial ABC transport system: an ATPase or ATP binding
subunit; An integral membrane protein; a hydrophilic
polypetpide, which likely functions as substrate binding
protein. Functionally, this transport system is involved
in osmoregulation. Under conditions of stress, the
organism recruits these transport system to accumulate
glycine betaine and other solutes which offer
osmo-protection. It has been demonstrated that glycine
betaine uptake is accompanied by symport with sodium
ions. The locus has been named variously as proU or
opuA. A gene library from L.lactis functionally
complements an E.coli proU mutant. The comlementing
locus is similar to a opuA locus in B.sutlis. This
clarifies the differences in nomenclature [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 363
Score = 54.1 bits (130), Expect = 6e-08
Identities = 39/143 (27%), Positives = 60/143 (41%), Gaps = 24/143 (16%)
Query: 306 ICIVGDNGAGKTTLLKIIMGIISPTAGT----------------RTVHRNLKFGYFSQH- 348
I+G +G+GK+T ++++ +I PTAG R V R K G Q
Sbjct: 22 FVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRK-KIGMVFQQF 80
Query: 349 ----HVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRV 404
H+ L N L + +E+ L G+ ++ LSGG + RV
Sbjct: 81 ALFPHMTILQ-NTSLGPELLGWPEQERKEKALELLKLVGLEE-YEHRYPDELSGGMQQRV 138
Query: 405 AFARMCMAAPNFLVLDEPTNHLD 427
AR A P+ L++DE + LD
Sbjct: 139 GLARALAAEPDILLMDEAFSALD 161
>gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional.
Length = 1622
Score = 54.4 bits (131), Expect = 8e-08
Identities = 45/164 (27%), Positives = 67/164 (40%), Gaps = 47/164 (28%)
Query: 290 KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTR--------------- 334
+P L+N+ L + S + IVG G GKT+L+ ++G + P +
Sbjct: 630 RPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRGTVAYVPQVSW 689
Query: 335 ----TVHRNLKFG-------YFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFG 383
TV N+ FG Y V L +L LL PG E +G G
Sbjct: 690 IFNATVRDNILFGSPFDPERYERAIDVTALQHDL---DLL----PGGDLTE----IGERG 738
Query: 384 VSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD 427
V ++SGGQK RV+ AR + + + D+P + LD
Sbjct: 739 V----------NISGGQKQRVSMARAVYSNSDVYIFDDPLSALD 772
>gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT)
Family protei. [Transport and binding proteins,
Carbohydrates, organic alcohols, and acids].
Length = 659
Score = 54.0 bits (130), Expect = 9e-08
Identities = 52/262 (19%), Positives = 93/262 (35%), Gaps = 51/262 (19%)
Query: 211 REIEAQRMHREHVQKFIDTF------RYNANRASSVQSKIKQLERLPELKPIEKEVEVV- 263
R++ V + + R ++S + L P VE
Sbjct: 391 RDMTRLAGFTARVDTLLQVLDDVKSGNFKRPRVEEIESGREGGRNSN-LVPGRGIVEYQD 449
Query: 264 --LKFPDTELLSPP-ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLL 320
+KF + L++P + + ++FE G +L I G NG GK++L
Sbjct: 450 NGIKFENIPLVTPNGDVLIESLSFEVPSGNNLL--------------ICGPNGCGKSSLF 495
Query: 321 KIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCV--QLLEAAFPGKPQEEYRR- 377
+I+ + G T K Y Q M L + Q++ +P ++ RR
Sbjct: 496 RILGELWPVYGGRLTKPAKGKLFYVPQRPY----MTLGTLRDQII---YPDSSEDMKRRG 548
Query: 378 -------------QLGGF---GVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDE 421
QL ++ LSGG+K R+A AR+ P F +LDE
Sbjct: 549 LSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDE 608
Query: 422 PTNHLDIETIEALGKAINKYTF 443
T+ + ++ + + ++
Sbjct: 609 CTSAVSVDVEGYMYRLCREFGI 630
>gnl|CDD|213207 cd03240, ABC_Rad50, ATP-binding cassette domain of Rad50. The
catalytic domains of Rad50 are similar to the
ATP-binding cassette of ABC transporters, but are not
associated with membrane-spanning domains. The conserved
ATP-binding motifs common to Rad50 and the ABC
transporter family include the Walker A and Walker B
motifs, the Q loop, a histidine residue in the switch
region, a D-loop, and a conserved LSGG sequence. This
conserved sequence, LSGG, is the most specific and
characteristic motif of this family and is thus known as
the ABC signature sequence.
Length = 204
Score = 51.8 bits (125), Expect = 1e-07
Identities = 40/149 (26%), Positives = 52/149 (34%), Gaps = 41/149 (27%)
Query: 308 IVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQH----------------HVD 351
IVG NGAGKTT+++ + A T + N K G + +
Sbjct: 27 IVGQNGAGKTTIIEALK-----YALTGELPPNSKGGAHDPKLIREGEVRAQVKLAFENAN 81
Query: 352 QLDMNLR--CVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKS------R 403
+ L F Q E S L G SGG+K R
Sbjct: 82 GKKYTITRSLAILENVIF--CHQGE----------SNWPLLDMRGRCSGGEKVLASLIIR 129
Query: 404 VAFARMCMAAPNFLVLDEPTNHLDIETIE 432
+A A + L LDEPT +LD E IE
Sbjct: 130 LALAETFGSNCGILALDEPTTNLDEENIE 158
>gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase
[Posttranslational modification, protein turnover,
chaperones].
Length = 251
Score = 52.2 bits (126), Expect = 1e-07
Identities = 37/159 (23%), Positives = 64/159 (40%), Gaps = 28/159 (17%)
Query: 308 IVGDNGAGKTTLLKIIMGIIS--PTAGTRT----------VHRNLKFGYF--SQHHVD-- 351
I+G NG+GK+TL IMG T G + G F Q+ V+
Sbjct: 35 IMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARAGIFLAFQYPVEIP 94
Query: 352 --------QLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVG-SLSGGQKS 402
+ MN + + +E + + G+ + ++V SGG+K
Sbjct: 95 GVTNSDFLRAAMN---ARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKK 151
Query: 403 RVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441
R ++ + P +LDEP + LDI+ ++ + + IN
Sbjct: 152 RNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINAL 190
>gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 263
Score = 52.3 bits (126), Expect = 1e-07
Identities = 43/170 (25%), Positives = 66/170 (38%), Gaps = 26/170 (15%)
Query: 290 KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHH 349
K L + L + ++G NGAGK+TLL I G + PT+G + S
Sbjct: 19 KRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGV-DVTKKSVAK 77
Query: 350 -------VDQLDMNLRCVQL------LEAAFPGKPQ-----------EEYRRQLGGFGVS 385
V Q + +L A GK + +R +L G+
Sbjct: 78 RANLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLG 137
Query: 386 -GDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEAL 434
+ +G LSGGQ+ ++ + P L+LDE T LD +T E +
Sbjct: 138 LENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFV 187
>gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit;
Provisional.
Length = 232
Score = 51.5 bits (124), Expect = 2e-07
Identities = 49/148 (33%), Positives = 67/148 (45%), Gaps = 38/148 (25%)
Query: 305 RICIVGDNGAGKTTLLKIIMGIISPTAGTRTV----HR----------------NLKFGY 344
R+ I+G +GAGK+TLL +I G ++P +G+ T+ H NL
Sbjct: 27 RVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLFQENNL---- 82
Query: 345 FSQHHVDQ-----LDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGG 399
FS V Q L+ L+ L AA Q E + DL + G LSGG
Sbjct: 83 FSHLTVAQNIGLGLNPGLK----LNAA-----QREKLHAIARQMGIEDLLARLPGQLSGG 133
Query: 400 QKSRVAFARMCMAAPNFLVLDEPTNHLD 427
Q+ RVA AR + L+LDEP + LD
Sbjct: 134 QRQRVALARCLVREQPILLLDEPFSALD 161
>gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system,
ATP-binding component PhnT. This ATP-binding component
of an ABC transport system is found in Salmonella and
Burkholderia lineages in the vicinity of enzymes for the
breakdown of 2-aminoethylphosphonate.
Length = 362
Score = 52.7 bits (126), Expect = 2e-07
Identities = 42/141 (29%), Positives = 59/141 (41%), Gaps = 24/141 (17%)
Query: 306 ICIVGDNGAGKTTLLKIIMGIISP--------TAGTRTVH-----RNL-----KFGYFSQ 347
+ ++G +G GKTTLL+ I G + A H R L + F
Sbjct: 34 LALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGLALLFQNYALFPH 93
Query: 348 HHV-DQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAF 406
V D + LR ++ +A E L G+ GD A LSGG + R+A
Sbjct: 94 LKVEDNVAFGLRAQKMPKADI----AERVADALKLVGL-GDAAAHLPAQLSGGMQQRIAI 148
Query: 407 ARMCMAAPNFLVLDEPTNHLD 427
AR P+ L+LDEP + LD
Sbjct: 149 ARAIAIEPDVLLLDEPLSALD 169
>gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component
[Amino acid transport and metabolism].
Length = 242
Score = 51.8 bits (124), Expect = 2e-07
Identities = 51/177 (28%), Positives = 82/177 (46%), Gaps = 28/177 (15%)
Query: 277 LQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTV 336
+QL+ +N Y + L ++ L + ++G +GAGK++LL+++ + P +GT +
Sbjct: 3 IQLNGINCFYGAHQ-ALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNI 61
Query: 337 HRNLKFGYFSQHHVDQLDMNLR----------------CVQ--LLEAAFP--GKPQEEYR 376
N F FS+ D+ +LR VQ L+EA G +++
Sbjct: 62 AGN-HFD-FSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQAL 119
Query: 377 RQ----LGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIE 429
+ L + A ++ LSGGQ+ RVA AR M P L+ DEPT LD E
Sbjct: 120 ARAEKLLKRLRLK-PYADRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPE 175
>gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose
transporter, MalK. ATP binding cassette (ABC) proteins
function from bacteria to human, mediating the
translocation of substances into and out of cells or
organelles. ABC transporters contain two
transmembrane-spanning domains (TMDs) or subunits and
two nucleotide binding domains (NBDs) or subunits that
couple transport to the hydrolysis of ATP. In the
maltose transport system, the periplasmic maltose
binding protein (MBP) stimulates the ATPase activity of
the membrane-associated transporter, which consists of
two transmembrane subunits, MalF and MalG, and two
copies of the ATP binding subunit, MalK, and becomes
tightly bound to the transporter in the catalytic
transition state, ensuring that maltose is passed to the
transporter as ATP is hydrolyzed.
Length = 213
Score = 51.1 bits (123), Expect = 2e-07
Identities = 40/181 (22%), Positives = 69/181 (38%), Gaps = 49/181 (27%)
Query: 277 LQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGT--- 333
++L V + L ++ L + ++G +G GKTT L++I G+ PT+G
Sbjct: 1 VELENVTKRF-GNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYI 59
Query: 334 ---------------------------RTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEAA 366
TV+ N+ FG V + +++ R ++ E
Sbjct: 60 GGRDVTDLPPKDRDIAMVFQNYALYPHMTVYDNIAFG-LKLRKVPKDEIDERVREVAELL 118
Query: 367 FPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHL 426
+ +QL SGGQ+ RVA R + P ++DEP ++L
Sbjct: 119 QIEHLLDRKPKQL-----------------SGGQRQRVALGRAIVREPKVFLMDEPLSNL 161
Query: 427 D 427
D
Sbjct: 162 D 162
>gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit;
Provisional.
Length = 343
Score = 52.1 bits (126), Expect = 2e-07
Identities = 54/161 (33%), Positives = 75/161 (46%), Gaps = 36/161 (22%)
Query: 308 IVGDNGAGKTTLLKIIMGIISPTAGTRTVH-RNL-------------KFGYFSQHHVDQL 353
++G +GAGK+TL++ I + PT+G V ++L + G QH
Sbjct: 36 VIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKARRQIGMIFQH----- 90
Query: 354 DMNL---RCVQLLEAAFP----GKPQEEYRRQ----LGGFGVSGDLALQFVGSLSGGQKS 402
NL R V A P G P+ E + + L G+S D A ++ LSGGQK
Sbjct: 91 -FNLLSSRTV-FDNVALPLELAGTPKAEIKARVTELLELVGLS-DKADRYPAQLSGGQKQ 147
Query: 403 RVAFARMCMAAPNFLVLDEPTNHLDIET---IEALGKAINK 440
RVA AR + P L+ DE T+ LD T I L K IN+
Sbjct: 148 RVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINR 188
>gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit;
Provisional.
Length = 305
Score = 52.0 bits (125), Expect = 2e-07
Identities = 45/201 (22%), Positives = 76/201 (37%), Gaps = 56/201 (27%)
Query: 277 LQLSEVNFEYVPGKPILTNVCLGATLESR----ICIVGDNGAGKTTLLKIIMGIISPTAG 332
+++ + + P ++E I I+G G+GKTT ++ + ++ P G
Sbjct: 3 IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTG 62
Query: 333 TRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEAAFPG----KPQEEYRRQLG-------- 380
T +++ + + + + + ++ L K +E RR++G
Sbjct: 63 T------IEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEY 116
Query: 381 ----------------GFGVSGDLALQ-------FVG-----------SLSGGQKSRVAF 406
GVS + A + VG LSGGQK RVA
Sbjct: 117 QLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQRSPFELSGGQKRRVAL 176
Query: 407 ARMCMAAPNFLVLDEPTNHLD 427
A + P+FLV DEPT LD
Sbjct: 177 AGILAMEPDFLVFDEPTAGLD 197
>gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 200
Score = 50.7 bits (121), Expect = 2e-07
Identities = 48/188 (25%), Positives = 78/188 (41%), Gaps = 37/188 (19%)
Query: 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRT 335
+L + E++F+Y +P+L + + + G NGAGKTTLLK+I G+++P G
Sbjct: 1 MLDVIELDFDY-HDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEI- 58
Query: 336 VHRNLKFGYFSQHHVDQLDMNLRCVQLLEAAFPG-----KPQEEYRRQL--------GGF 382
F + + + C + F G P R G
Sbjct: 59 --------LFERQSIKK----DLCTYQKQLCFVGHRSGINPYLTLRENCLYDIHFSPGAV 106
Query: 383 GVSGDLALQF---------VGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEA 433
G++ +L F G LS GQK +VA R+ M+ +LDEP LD ++
Sbjct: 107 GIT-ELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLT 165
Query: 434 LGKAINKY 441
+ I ++
Sbjct: 166 IITKIQEH 173
>gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette
domain 1 of RNase L inhibitor. The ABC ATPase, RNase L
inhibitor (RLI), is a key enzyme in ribosomal
biogenesis, formation of translation preinitiation
complexes, and assembly of HIV capsids. RLI s are not
transport proteins and thus cluster with a group of
soluble proteins that lack the transmembrane components
commonly found in other members of the family.
Structurally, RLIs have an N-terminal Fe-S domain and
two nucleotide binding domains which are arranged to
form two composite active sites in their interface
cleft. RLI is one of the most conserved enzymes between
archaea and eukaryotes with a sequence identity more
than 48%. The high degree of evolutionary conservation
suggests that RLI performs a central role in archaeal
and eukaryotic physiology.
Length = 255
Score = 51.6 bits (124), Expect = 2e-07
Identities = 40/147 (27%), Positives = 60/147 (40%), Gaps = 31/147 (21%)
Query: 308 IVGDNGAGKTTLLKIIMGIISPTAGT-------RTVHRNLKFG-----YFSQHHVDQLD- 354
+VG NG GK+T LKI+ G + P G + + G YF++ +
Sbjct: 31 LVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFR-GSELQNYFTKLLEGDVKV 89
Query: 355 -MNLRCVQLLEAAFPGK------------PQEEYRRQLGGFGVSGDLALQFVGSLSGGQK 401
+ + V L+ A GK +E QL V + + LSGG+
Sbjct: 90 IVKPQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRHVLD----RNIDQLSGGEL 145
Query: 402 SRVAFARMCMAAPNFLVLDEPTNHLDI 428
RVA A +F DEP+++LDI
Sbjct: 146 QRVAIAAALARDADFYFFDEPSSYLDI 172
>gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase
protein; Reviewed.
Length = 375
Score = 52.3 bits (126), Expect = 2e-07
Identities = 49/190 (25%), Positives = 76/190 (40%), Gaps = 61/190 (32%)
Query: 274 PPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGT 333
P+++L ++ + GK +++N+ L + ++G +G GKTT+L++I G +P +G
Sbjct: 12 SPLVELRGISKSF-DGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGR 70
Query: 334 ------------------------------RTVHRNLKFGYFSQHHVDQLDMN------L 357
TV N+ FG Q ++ L
Sbjct: 71 IMLDGQDITHVPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQK-TPAAEITPRVMEAL 129
Query: 358 RCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFL 417
R VQL E A KP + LSGGQ+ RVA AR + P L
Sbjct: 130 RMVQLEEFA-QRKPHQ----------------------LSGGQQQRVAIARAVVNKPKVL 166
Query: 418 VLDEPTNHLD 427
+LDE + LD
Sbjct: 167 LLDESLSALD 176
>gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain
of the thiamine transport system. Part of the
binding-protein-dependent transport system tbpA-thiPQ
for thiamine and TPP. Probably responsible for the
translocation of thiamine across the membrane. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 211
Score = 51.0 bits (122), Expect = 2e-07
Identities = 43/136 (31%), Positives = 64/136 (47%), Gaps = 14/136 (10%)
Query: 305 RICIVGDNGAGKTTLLKIIMGIISPTAGTRTVH-RNLKFGYFSQHHVDQL--DMNLRCVQ 361
IVG +G+GK+TLL +I G +P +G ++ ++ + V L + NL
Sbjct: 26 ITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQENNLFAHL 85
Query: 362 LLE-----AAFPGKPQEEYRRQ-----LGGFGVSGDLALQFVGSLSGGQKSRVAFARMCM 411
+E PG RQ L G++G L + G LSGG++ RVA AR+ +
Sbjct: 86 TVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAG-LEKRLPGELSGGERQRVALARVLV 144
Query: 412 AAPNFLVLDEPTNHLD 427
L+LDEP LD
Sbjct: 145 RDKPVLLLDEPFAALD 160
>gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 290
Score = 51.6 bits (124), Expect = 2e-07
Identities = 53/184 (28%), Positives = 79/184 (42%), Gaps = 50/184 (27%)
Query: 281 EVNFEYVPGKPI----LTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTV 336
+V Y P L +V + S + I+G G+GK+TLL+ + G++ PT+GT T+
Sbjct: 7 KVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTI 66
Query: 337 ----------HRNLK---------FGYFSQHHVDQLDMNLRCVQLLEA------AF-P-- 368
++ LK F F +H QL E F P
Sbjct: 67 GERVITAGKKNKKLKPLRKKVGIVF-QFPEH------------QLFEETVEKDICFGPMN 113
Query: 369 -GKPQEEYRRQ----LGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPT 423
G +E+ +++ + G+ +L + LSGGQ RVA A + P LVLDEPT
Sbjct: 114 FGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPT 173
Query: 424 NHLD 427
LD
Sbjct: 174 AGLD 177
>gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor
regulator (CFTR). The model describes the cystis
fibrosis transmembrane conductor regulator (CFTR) in
eukaryotes. The principal role of this protein is
chloride ion conductance. The protein is predicted to
consist of 12 transmembrane domains. Mutations or
lesions in the genetic loci have been linked to the
aetiology of asthma, bronchiectasis, chronic obstructive
pulmonary disease etc. Disease-causing mutations have
been studied by 36Cl efflux assays in vitro cell
cultures and electrophysiology, all of which point to
the impairment of chloride channel stability and not the
biosynthetic processing per se [Transport and binding
proteins, Anions].
Length = 1490
Score = 53.0 bits (127), Expect = 2e-07
Identities = 44/167 (26%), Positives = 69/167 (41%), Gaps = 46/167 (27%)
Query: 289 GKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGT--------------- 333
P+L N+ + + G G+GK++LL +IMG + P+ G
Sbjct: 438 VTPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSGRISFSPQTSW 497
Query: 334 ---RTVHRNLKFG-------YFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFG 383
T+ N+ FG Y S QL+ ++ A FP K + LG G
Sbjct: 498 IMPGTIKDNIIFGLSYDEYRYTSVIKACQLEEDI-------ALFPEKD----KTVLGEGG 546
Query: 384 VSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIET 430
++ LSGGQ++R++ AR + +LD P HLD+ T
Sbjct: 547 IT----------LSGGQRARISLARAVYKDADLYLLDSPFTHLDVVT 583
Score = 40.3 bits (94), Expect = 0.002
Identities = 44/186 (23%), Positives = 78/186 (41%), Gaps = 47/186 (25%)
Query: 289 GKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQH 348
G+ +L ++ R+ ++G G+GK+TLL ++ ++S T G +
Sbjct: 1231 GRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEG--------------EI 1275
Query: 349 HVDQLDMNLRCVQLLEAAFPGKPQE------EYRRQLGGFG---------VSGDLAL--- 390
+D + N +Q AF PQ+ +R+ L + V+ ++ L
Sbjct: 1276 QIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKSV 1335
Query: 391 --QFVGSL-----------SGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKA 437
QF L S G K + AR ++ L+LDEP+ HLD T++ + K
Sbjct: 1336 IEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKT 1395
Query: 438 INKYTF 443
+ K +F
Sbjct: 1396 L-KQSF 1400
>gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein.
[Transport and binding proteins, Other].
Length = 711
Score = 52.8 bits (127), Expect = 2e-07
Identities = 53/210 (25%), Positives = 80/210 (38%), Gaps = 56/210 (26%)
Query: 266 FPDTELLSPPIL----QLSEVNFEYV--PGKPILTNVCLGATLE--SRICIVGDNGAGKT 317
P T L+P L + +V+F Y P P+L L TL + +VG +G+GK+
Sbjct: 464 IPLTGTLAPLNLEGLIEFQDVSFSYPNRPDVPVLKG--LTFTLHPGEVVALVGPSGSGKS 521
Query: 318 TLLKIIMGIISPTAGTRTV---------HRNL--KFGYFSQHHV--------------DQ 352
T+ ++ + PT G + H L + Q V
Sbjct: 522 TVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTD 581
Query: 353 LDMNLRCVQLLEAA-------FPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVA 405
+++ AA F + Y ++G G LSGGQK R+A
Sbjct: 582 TPDE----EIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQ----------LSGGQKQRIA 627
Query: 406 FARMCMAAPNFLVLDEPTNHLDIETIEALG 435
AR + P L+LDE T+ LD E + L
Sbjct: 628 IARALVRKPRVLILDEATSALDAECEQLLQ 657
>gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter
subunit; Provisional.
Length = 257
Score = 51.1 bits (122), Expect = 3e-07
Identities = 44/169 (26%), Positives = 73/169 (43%), Gaps = 29/169 (17%)
Query: 292 ILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVH---------RNLKF 342
+L V L A I I+G +G+GK+T L+ I + P+ G+ V+ ++ +
Sbjct: 20 VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQL 79
Query: 343 GYFSQHHVDQLDMNLRCV--------------QLLEAAFP--GKPQEEYR----RQLGGF 382
++ + L L V ++EA G ++E R + L
Sbjct: 80 KVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKV 139
Query: 383 GVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETI 431
G+ ++ LSGGQ+ RV+ AR P L+ DEPT+ LD E +
Sbjct: 140 GIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELV 188
>gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein
MsbA. This family consists of a single polypeptide
chain transporter in the ATP-binding cassette (ABC)
transporter family, MsbA, which exports lipid A. It may
also act in multidrug resistance. Lipid A, a part of
lipopolysaccharide, is found in the outer leaflet of the
outer membrane of most Gram-negative bacteria. Members
of this family are restricted to the Proteobacteria
(although lipid A is more broadly distributed) and often
are clustered with lipid A biosynthesis genes [Cell
envelope, Biosynthesis and degradation of surface
polysaccharides and lipopolysaccharides, Transport and
binding proteins, Other].
Length = 571
Score = 52.4 bits (126), Expect = 3e-07
Identities = 47/174 (27%), Positives = 73/174 (41%), Gaps = 30/174 (17%)
Query: 282 VNFEYVP-GKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVH--- 337
V F Y +P L ++ L + +VG +G+GK+TL+ +I P +G +
Sbjct: 336 VTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHD 395
Query: 338 ------RNLK--FGYFSQHHV---DQLDMNLRCVQLLEAAFPGKPQEEYRRQLGG----- 381
+L+ SQ V D + N+ + +A + E R L
Sbjct: 396 LADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQA-----DRAEIERALAAAYAQD 450
Query: 382 FGVSGDLALQF-VGS----LSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIET 430
F L L +G LSGGQ+ R+A AR + L+LDE T+ LD E+
Sbjct: 451 FVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNES 504
>gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit;
Provisional.
Length = 280
Score = 51.2 bits (123), Expect = 3e-07
Identities = 57/196 (29%), Positives = 84/196 (42%), Gaps = 54/196 (27%)
Query: 282 VNFEYVPG-----KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTV 336
V+++Y K L +V L + I+G NG+GK+T+ K + ++ P+ G V
Sbjct: 10 VSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYV 69
Query: 337 H-------------RNLKFGYFSQHHVDQLDMNLRCVQLLE--AAF-P---GKPQEEYRR 377
RN K G Q+ +Q+ ++E AF P G P EE R
Sbjct: 70 DGLDTSDEENLWDIRN-KAGMVFQNPDNQI-----VATIVEEDVAFGPENLGIPPEEIRE 123
Query: 378 QLGGFGVSGDLALQFVGS----------LSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD 427
++ D +L+ VG LSGGQK RVA A + P ++ DEPT LD
Sbjct: 124 RV-------DESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLD 176
Query: 428 -------IETIEALGK 436
+ TI+ L K
Sbjct: 177 PSGRREVVNTIKELNK 192
>gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein
YbbA; Provisional.
Length = 228
Score = 50.5 bits (121), Expect = 3e-07
Identities = 48/159 (30%), Positives = 70/159 (44%), Gaps = 22/159 (13%)
Query: 292 ILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAG---------------TRTV 336
ILT V L I ++G++G+GK+TLL I+ G+ ++G R
Sbjct: 25 ILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAK 84
Query: 337 HRNLKFGYFSQHHVDQLDMN-LRCVQLLEAAFPGKPQEEYRRQ----LGGFGVSGDLALQ 391
R G+ Q + +N L V+L A G+ + R L G+ G
Sbjct: 85 LRAKHVGFVFQSFMLIPTLNALENVEL-PALLRGESSRQSRNGAKALLEQLGL-GKRLDH 142
Query: 392 FVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIET 430
LSGG++ RVA AR P+ L DEPT +LD +T
Sbjct: 143 LPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQT 181
>gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein;
Provisional.
Length = 510
Score = 52.1 bits (125), Expect = 4e-07
Identities = 52/190 (27%), Positives = 82/190 (43%), Gaps = 38/190 (20%)
Query: 274 PPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGT 333
P+ L VN PG+ + A L G+NGAGK+TL+K++ GI PT GT
Sbjct: 16 GPVHALKSVNLTVYPGE-------IHALL-------GENGAGKSTLMKVLSGIHEPTKGT 61
Query: 334 RTV---------HR---NLKFGYFSQHH--VDQLDM--NLRCVQLLEAAFPGKPQEEYRR 377
T+ H+ L G Q +D+L + NL + L G ++R
Sbjct: 62 ITINNINYNKLDHKLAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWRE 121
Query: 378 Q-------LGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIET 430
L G+ DL + V +LS K + A+ M +++DEPT+ L +
Sbjct: 122 MRVRAAMMLLRVGLKVDLD-EKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKE 180
Query: 431 IEALGKAINK 440
++ L +N+
Sbjct: 181 VDYLFLIMNQ 190
Score = 32.8 bits (75), Expect = 0.36
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 391 QFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDI 428
Q + LSGG + +V ++ P ++ DEPT +D+
Sbjct: 405 QNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDV 442
>gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK.
Members of this family are the PhnK protein of C-P
lyase systems for utilization of phosphonates. These
systems resemble phosphonatase-based systems in having a
three component ABC transporter, where TIGR01097 is the
permease, TIGR01098 is the phosphonates binding protein,
and TIGR02315 is the ATP-binding cassette (ABC) protein.
They differ, however, in having, typically, ten or more
additional genes, many of which are believed to form a
membrane-associated complex. This protein (PhnK) and the
adjacent-encoded PhnL resemble transporter ATP-binding
proteins but are suggested, based on mutatgenesis
studies, to be part of this complex rather than part of
a transporter per se [Central intermediary metabolism,
Phosphorus compounds].
Length = 253
Score = 51.0 bits (122), Expect = 4e-07
Identities = 45/186 (24%), Positives = 76/186 (40%), Gaps = 36/186 (19%)
Query: 274 PPILQLSEVNFEYVPGKPILTNVCLGATLESR----ICIVGDNGAGKTTLLKIIMGIISP 329
P+LQ+S ++ Y GK C + + + IVG++G+GK+TLL + G ++P
Sbjct: 1 KPLLQVSGLSKSYGGGKG-----CRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAP 55
Query: 330 TAGTRTV-----------------HRNL---KFGYFSQHHVDQLDMNLRC-------VQL 362
GT T R L ++G+ Q+ D L M + +
Sbjct: 56 DHGTATYIMRSGAELELYQLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMA 115
Query: 363 LEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEP 422
+ A G + + L + + SGG + R+ AR + P + +DEP
Sbjct: 116 IGARHYGNIRATAQDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEP 175
Query: 423 TNHLDI 428
T LD+
Sbjct: 176 TGGLDV 181
>gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit;
Provisional.
Length = 255
Score = 50.8 bits (122), Expect = 4e-07
Identities = 44/163 (26%), Positives = 70/163 (42%), Gaps = 30/163 (18%)
Query: 290 KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVH------------ 337
K IL ++ L ++G NG GK+TLLK +++P +GT +
Sbjct: 15 KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQL 74
Query: 338 -RNLKFGYFSQHHVDQLDMNLRCVQLLE----------AAFPGKPQEEYRRQLGGFGVSG 386
R L QHH+ + +R +L+ + + + ++
Sbjct: 75 ARRLAL--LPQHHLTPEGITVR--ELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRIN- 129
Query: 387 DLALQFVGSLSGGQKSRVAFARMCMAAPNFLV-LDEPTNHLDI 428
LA + + LSGGQ+ R AF M +A +V LDEPT +LDI
Sbjct: 130 HLADRRLTDLSGGQRQR-AFLAMVLAQDTPVVLLDEPTTYLDI 171
>gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 279
Score = 50.9 bits (122), Expect = 4e-07
Identities = 52/199 (26%), Positives = 84/199 (42%), Gaps = 56/199 (28%)
Query: 276 ILQLSEVNFEYVPG--KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGT 333
I+++ + F+Y K L +V + I+G NG+GK+T +++I G++ +G
Sbjct: 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQ 63
Query: 334 RTVHRNL-----------KFGYFSQHHVDQL------DMNLRCVQLLEAAF----PGKPQ 372
+ +L K G Q+ +Q D + AF G P
Sbjct: 64 IIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVED---------DVAFGLENKGIPH 114
Query: 373 EEYRRQLGGFGVSGDLALQFVG----------SLSGGQKSRVAFARMCMAAPNFLVLDEP 422
EE + ++ + AL+ VG LSGGQK RVA A P ++LDE
Sbjct: 115 EEMKERV-------NEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEA 167
Query: 423 TNHLD-------IETIEAL 434
T+ LD I+TI+ +
Sbjct: 168 TSMLDPEGRLELIKTIKGI 186
>gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding
protein. Members of this family are the ATP-binding
protein of the D-methionine ABC transporter complex.
Known members belong to the Proteobacteria.
Length = 343
Score = 51.4 bits (123), Expect = 4e-07
Identities = 58/196 (29%), Positives = 88/196 (44%), Gaps = 39/196 (19%)
Query: 276 ILQLSEVN-FEYVPGKPI--LTNVCLGATLESRIC-IVGDNGAGKTTLLKIIMGIISPTA 331
+++LS + + K I L NV L +I ++G +GAGK+TL++ + + PT+
Sbjct: 1 MIKLSNITKVFHQGTKTIQALNNVSLHVP-AGQIYGVIGASGAGKSTLIRCVNLLERPTS 59
Query: 332 GTRTV--------------HRNLKFGYFSQHHVDQLDMNLRCVQLL--EAAFP----GKP 371
G+ V + G QH NL + + A P P
Sbjct: 60 GSVIVDGQDLTTLSNSELTKARRQIGMIFQH------FNLLSSRTVFGNVALPLELDNTP 113
Query: 372 QEEYRRQ----LGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD 427
++E +R+ L G+ GD + +LSGGQK RVA AR + P L+ DE T+ LD
Sbjct: 114 KDEIKRKVTELLALVGL-GDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALD 172
Query: 428 IET---IEALGKAINK 440
T I L K IN+
Sbjct: 173 PATTQSILELLKEINR 188
>gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE.
This family represents the NikE subunit of a
multisubunit nickel import ABC transporter complex.
Nickel, once imported, may be used in urease and in
certain classes of hydrogenase and superoxide dismutase
[Transport and binding proteins, Cations and iron
carrying compounds].
Length = 265
Score = 50.6 bits (121), Expect = 5e-07
Identities = 46/171 (26%), Positives = 71/171 (41%), Gaps = 43/171 (25%)
Query: 290 KPILTNVCLGATLESRICI--VGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQ 347
P+LTNV L ++E + +G +G GK+TL ++++G+ P GT F
Sbjct: 24 APVLTNVSL--SIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTV---------SFRG 72
Query: 348 HHVDQLDMN-----LRCVQLLEAAFP-------------GKPQEEY------RRQ----- 378
+ QLD R VQL+ P G+P ++
Sbjct: 73 QDLYQLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAE 132
Query: 379 -LGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDI 428
L G+ + A + LSGGQ R+ AR P +VLDE ++LD+
Sbjct: 133 LLDMVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDM 183
>gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional.
Length = 1560
Score = 52.1 bits (125), Expect = 5e-07
Identities = 54/174 (31%), Positives = 78/174 (44%), Gaps = 47/174 (27%)
Query: 272 LSPPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTA 331
L P +L L +V+ GK LT V LGAT G+GK+TLL+ ++ +
Sbjct: 670 LEPKVL-LRDVSVSVPRGK--LT-VVLGAT-----------GSGKSTLLQSLLSQFEISE 714
Query: 332 G------------------TRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQE 373
G TV N+ F F + +L +R QL EA
Sbjct: 715 GRVWAERSIAYVPQQAWIMNATVRGNILF--FDEEDAARLADAVRVSQL-EADL------ 765
Query: 374 EYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD 427
QLGG G+ ++ + V +LSGGQK+RV+ AR A + +LD+P + LD
Sbjct: 766 ---AQLGG-GLETEIGEKGV-NLSGGQKARVSLARAVYANRDVYLLDDPLSALD 814
>gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein;
Provisional.
Length = 352
Score = 50.6 bits (122), Expect = 6e-07
Identities = 42/159 (26%), Positives = 58/159 (36%), Gaps = 64/159 (40%)
Query: 308 IVGDNGAGKTTLLKIIMGIISPTAG-------------------------------TR-- 334
I G +GAGKT+L+ I G+ P G R
Sbjct: 29 IFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLF 88
Query: 335 ---TVHRNLKFGY--FSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLA 389
V NL++G D++ V LL G+ L
Sbjct: 89 PHYKVRGNLRYGMAKSMVAQFDKI------VALL-------------------GI-EPLL 122
Query: 390 LQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDI 428
++ GSLSGG+K RVA R + AP L++DEP LD+
Sbjct: 123 DRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDL 161
>gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional.
Length = 1495
Score = 51.5 bits (123), Expect = 7e-07
Identities = 53/215 (24%), Positives = 95/215 (44%), Gaps = 40/215 (18%)
Query: 235 NRASSVQSKIKQLERLPELKPIEKEVEVVLKFPDTELLSPPI-LQLSEVNFEYVPGKPIL 293
N S V + L+R+ EL + E ++ + P + +P I ++ +++ KP L
Sbjct: 576 NLLSQVVNANVSLQRIEEL--LLSEERILAQNPPLQPGAPAISIKNGYFSWDSKTSKPTL 633
Query: 294 TNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGT-------------------R 334
+++ L + S + IVG G GKT+L+ ++G +S +
Sbjct: 634 SDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRGSVAYVPQVSWIFNA 693
Query: 335 TVHRNLKFG--YFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQF 392
TV N+ FG + S+ + +D+ +Q PG+ E +G GV
Sbjct: 694 TVRENILFGSDFESERYWRAIDVT--ALQHDLDLLPGRDLTE----IGERGV-------- 739
Query: 393 VGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD 427
++SGGQK RV+ AR + + + D+P + LD
Sbjct: 740 --NISGGQKQRVSMARAVYSNSDIYIFDDPLSALD 772
Score = 38.8 bits (90), Expect = 0.006
Identities = 51/239 (21%), Positives = 96/239 (40%), Gaps = 52/239 (21%)
Query: 236 RASSVQSKIKQLERLPELKPIEKEVEVVLK--FPDTELLSPPILQLSEVNFEYVPG-KPI 292
+AS ++ + +ER+ + E +++ P + S ++ +V+ Y PG P+
Sbjct: 1192 QASKAENSLNSVERVGNYIDLPSEATAIIENNRPVSGWPSRGSIKFEDVHLRYRPGLPPV 1251
Query: 293 LTNVCLGATLESRICIVGDNGAGKTTLLKIIMGII------------------------- 327
L + + ++ +VG GAGK+++L + I+
Sbjct: 1252 LHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRV 1311
Query: 328 ------SPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGG 381
SP + TV N+ FS+H+ D + L EA ++ R
Sbjct: 1312 LSIIPQSPVLFSGTVRFNID--PFSEHN----DAD-----LWEALERAHIKDVIDRN--P 1358
Query: 382 FGVSGDLALQFVG--SLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAI 438
FG+ ++ G + S GQ+ ++ AR + LVLDE T +D+ T + + I
Sbjct: 1359 FGLDAEV---SEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTI 1414
>gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter
Associated with Antigen Processing, subfamily C. TAP
(Transporter Associated with Antigen Processing) is
essential for peptide delivery from the cytosol into the
lumen of the endoplasmic reticulum (ER), where these
peptides are loaded on major histocompatibility complex
(MHC) I molecules. Loaded MHC I leave the ER and display
their antigenic cargo on the cell surface to cytotoxic T
cells. Subsequently, virus-infected or malignantly
transformed cells can be eliminated. TAP belongs to the
large family of ATP-binding cassette (ABC) transporters,
which translocate a vast variety of solutes across
membranes.
Length = 226
Score = 49.4 bits (118), Expect = 8e-07
Identities = 51/195 (26%), Positives = 78/195 (40%), Gaps = 44/195 (22%)
Query: 276 ILQLSEVNFEYVPGKPILTNVCLGATLESR----ICIVGDNGAGKTTLLKIIMGIISPTA 331
I++ V F Y P +P T V + +VG +G+GK+T++ ++ P
Sbjct: 11 IVKFQNVTFAY-PTRPD-TLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQG 68
Query: 332 GTRTV---------HRNL--KFGYFSQHHV-------DQLDMNLRCVQL---LEAA---- 366
G + H+ L K Q V D + L+ EAA
Sbjct: 69 GQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAH 128
Query: 367 ---FPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPT 423
F + Y ++G G LSGGQK RVA AR + P L+LDE T
Sbjct: 129 AHSFISELASGYDTEVGEKG----------SQLSGGQKQRVAIARALIRNPQVLILDEAT 178
Query: 424 NHLDIETIEALGKAI 438
+ LD E+ + + +A+
Sbjct: 179 SALDAESEQQVQQAL 193
>gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter,
ATP-binding protein. Members of this family are the
ATP-binding protein of a conserved four gene ABC
transporter operon found next to ectoine unilization
operons and ectoine biosynthesis operons. Ectoine is a
compatible solute that protects enzymes from high
osmolarity. It is released by some species in response
to hypoosmotic shock, and it is taken up by a number of
bacteria as a compatible solute or for consumption. This
family shows strong sequence similiarity to a number of
amino acid ABC transporter ATP-binding proteins.
Length = 252
Score = 49.8 bits (119), Expect = 8e-07
Identities = 40/157 (25%), Positives = 64/157 (40%), Gaps = 30/157 (19%)
Query: 305 RICIVGDNGAGKTTLLKIIMGIISPTAGTRTVH---------RNLKFGYFSQHHVDQLDM 355
++ ++G +G+GK+T+L+I+M + G V RN + H+ Q+
Sbjct: 28 KVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRN 87
Query: 356 NLRCVQLLEAAFP----------------GKPQEEYRRQ----LGGFGVSGDLALQFVGS 395
+ V FP G + E ++ L G+ D A
Sbjct: 88 KIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGL-ADKADHMPAQ 146
Query: 396 LSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIE 432
LSGGQ+ RVA AR P ++ DE T+ LD E +
Sbjct: 147 LSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVG 183
>gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter
membrane/ATP-binding component; Reviewed.
Length = 588
Score = 51.0 bits (123), Expect = 9e-07
Identities = 58/214 (27%), Positives = 86/214 (40%), Gaps = 44/214 (20%)
Query: 250 LPELKPIEKEVE--VVLKFPDTELLSPPILQLSEVNFEYVPGKPILTNVCLGATLESRIC 307
L P+ E E +L L P +NF G RI
Sbjct: 342 LASNDPVTIEAEDLEILSPDGKTLAGP-------LNFTLPAG--------------QRIA 380
Query: 308 IVGDNGAGKTTLLKIIMGIISPTAGTRTVH----RNLKFGYFSQH--HVDQLDMNLRCVQ 361
+VG +GAGKT+LL ++G + P G+ ++ R L + +H V Q + L
Sbjct: 381 LVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSWVGQ-NPQLPHGT 438
Query: 362 LLEAAFPGKPQ---EEYRRQLGGFGVSGDLALQFVG----------SLSGGQKSRVAFAR 408
L + G P E+ ++ L VS L L G LS GQ R+A AR
Sbjct: 439 LRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALAR 498
Query: 409 MCMAAPNFLVLDEPTNHLDIETIEALGKAINKYT 442
+ L+LDEPT LD + + + +A+N +
Sbjct: 499 ALLQPCQLLLLDEPTASLDAHSEQLVMQALNAAS 532
>gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding
subunit. This model describes spermidine/putrescine ABC
transporter, ATP binding subunit in bacteria and its
equivalents in archaea. This transport system belong to
the larger ATP-Binding Cassette (ABC) transporter
superfamily. The characteristic feature of these
transporter is the obligatory coupling of ATP hydrolysis
to substrate translocation. The minimal configuration of
bacterial ABC transport system: an ATPase or ATP binding
subunit; An integral membrane protein; a hydrophilic
polypetpide, which likely functions as substrate binding
protein. Polyamines like spermidine and putrescine play
vital role in cell proliferation, differentiation, and
ion homeostasis. The concentration of polyamines within
the cell are regulated by biosynthesis, degradation and
transport (uptake and efflux included) [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 325
Score = 50.2 bits (120), Expect = 1e-06
Identities = 40/147 (27%), Positives = 59/147 (40%), Gaps = 42/147 (28%)
Query: 308 IVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLL---E 364
++G +G GKTTLL+++ G P +G+ V + +LR + ++
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIM---------LDGEDVTNVPPHLRHINMVFQSY 51
Query: 365 AAFP---------------GKPQEEYRR---------QLGGFGVSGDLALQFVGSLSGGQ 400
A FP P+ E + QL F LSGGQ
Sbjct: 52 ALFPHMTVEENVAFGLKMRKVPRAEIKPRVLEALRLVQLEEFADR------KPHQLSGGQ 105
Query: 401 KSRVAFARMCMAAPNFLVLDEPTNHLD 427
+ RVA AR + P L+LDEP + LD
Sbjct: 106 QQRVALARALVFKPKILLLDEPLSALD 132
>gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL.
Members of this family are the PhnL protein of C-P
lyase systems for utilization of phosphonates. These
systems resemble phosphonatase-based systems in having a
three component ABC transporter, where TIGR01097 is the
permease, TIGR01098 is the phosphonates binding protein,
and TIGR02315 is the ATP-binding cassette (ABC) protein.
They differ, however, in having, typically, ten or more
additional genes, many of which are believed to form a
membrane-associated C-P lysase complex. This protein
(PhnL) and the adjacent-encoded PhnK (TIGR02323)
resemble transporter ATP-binding proteins but are
suggested, based on mutatgenesis studies, to be part of
this C-P lyase complex rather than part of a transporter
per se.
Length = 224
Score = 49.3 bits (118), Expect = 1e-06
Identities = 47/168 (27%), Positives = 62/168 (36%), Gaps = 39/168 (23%)
Query: 291 PILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVH------------- 337
P+L NV L + + G +GAGK+TLLK + P +G V
Sbjct: 22 PVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASP 81
Query: 338 ------RNLKFGYFSQHHVDQLDMNLRCV-----------QLLEAAFP-GKPQEEYRRQL 379
R GY SQ LR + LLE P + R L
Sbjct: 82 REVLEVRRKTIGYVSQF--------LRVIPRVSALEVVAEPLLERGVPREAARARARELL 133
Query: 380 GGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD 427
+ L + SGG++ RV AR +A L+LDEPT LD
Sbjct: 134 ARLNIPERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLD 181
>gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug
resistance-like subfamily G of ATP-binding cassette
transporters. The pleiotropic drug resistance (PDR) is
a well-described phenomenon occurring in fungi and
shares several similarities with processes in bacteria
and higher eukaryotes. This PDR subfamily represents
domain I of its (ABC-IM)2 organization. ABC transporters
are a large family of proteins involved in the transport
of a wide variety of different compounds including
sugars, ions, peptides, and more complex organic
molecules. The nucleotide-binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 202
Score = 48.8 bits (117), Expect = 1e-06
Identities = 32/156 (20%), Positives = 55/156 (35%), Gaps = 39/156 (25%)
Query: 288 PGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFG---- 343
PIL + + ++G G+G +TLLK + V ++ +
Sbjct: 18 SKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVS---VEGDIHYNGIPY 74
Query: 344 ------------YFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQ 391
Y S+ V + +R + L+ A R G +
Sbjct: 75 KEFAEKYPGEIIYVSEEDVHFPTLTVR--ETLDFA---------LRCKGN---------E 114
Query: 392 FVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD 427
FV +SGG++ RV+ A ++ + L D T LD
Sbjct: 115 FVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLD 150
>gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 257
Score = 49.3 bits (117), Expect = 1e-06
Identities = 47/184 (25%), Positives = 79/184 (42%), Gaps = 29/184 (15%)
Query: 284 FEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFG 343
+ Y+ K IL ++ + S I+G +G+GK+TLLK++ +I V + K
Sbjct: 17 YLYINDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKV--DGKVL 74
Query: 344 YFSQH--HVDQLDMNLRCVQLLEA-------------AFPGKPQ------------EEYR 376
YF + +D + + + + A+P K EE
Sbjct: 75 YFGKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECL 134
Query: 377 RQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGK 436
R++G + D LSGGQ+ R+ AR P L++DEPT+ +DI +A+ K
Sbjct: 135 RKVGLWKEVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEK 194
Query: 437 AINK 440
I +
Sbjct: 195 LITE 198
>gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component
[Coenzyme metabolism].
Length = 231
Score = 48.9 bits (117), Expect = 1e-06
Identities = 51/179 (28%), Positives = 75/179 (41%), Gaps = 47/179 (26%)
Query: 277 LQLSEVNFEYVPGKPILTNVCLGATLES--RICIVGDNGAGKTTLLKIIMGIISPTAGTR 334
L L +V F Y + T+ + + I+G +GAGK+TLL +I G +P +G
Sbjct: 2 LALDDVRFSYGH-----LPMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEI 56
Query: 335 TVH--------------------RNLKFGYFSQHHVDQ-----LDMNLRCVQLLEAAFPG 369
++ NL F+ V Q L L+ L A
Sbjct: 57 LINGVDHTASPPAERPVSMLFQENNL----FAHLTVAQNIGLGLSPGLK----LNAE--- 105
Query: 370 KPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPN-FLVLDEPTNHLD 427
+E+ G++G L + G LSGGQ+ RVA AR C+ L+LDEP + LD
Sbjct: 106 -QREKVEAAAAQVGLAGFLK-RLPGELSGGQRQRVALAR-CLVREQPILLLDEPFSALD 161
>gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding
protein; Provisional.
Length = 241
Score = 48.7 bits (116), Expect = 2e-06
Identities = 40/156 (25%), Positives = 68/156 (43%), Gaps = 18/156 (11%)
Query: 289 GKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTV----------HR 338
G+ ++ +V L + ++G NGAGKTT +++GI+ AG + H
Sbjct: 15 GRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHA 74
Query: 339 NLK--FGYFSQH-----HVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQ 391
+ GY Q + D + +Q+ + + ++ + F + L
Sbjct: 75 RARRGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIE-HLRDS 133
Query: 392 FVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD 427
SLSGG++ RV AR A P F++LDEP +D
Sbjct: 134 MGQSLSGGERRRVEIARALAANPKFILLDEPFAGVD 169
>gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1,
subfamily C. Domain 2 of NFT1 (New full-length MRP-type
transporter 1). NFT1 belongs to the MRP (multidrug
resistance-associated protein) family of ABC
transporters. Some of the MRP members have five
additional transmembrane segments in their N-terminus,
but the function of these additional membrane-spanning
domains is not clear. The MRP was found in the
multidrug-resisting lung cancer cell in which
p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions such as
glutathione, glucuronate, and sulfate.
Length = 207
Score = 48.2 bits (115), Expect = 2e-06
Identities = 43/163 (26%), Positives = 65/163 (39%), Gaps = 27/163 (16%)
Query: 291 PILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHV 350
P+L NV +I IVG GAGK+TL+ + + G +
Sbjct: 22 PVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKI--------------EI 67
Query: 351 DQLDMNLRCVQLLEAAFPGKPQE------EYRRQLGGFGVSGDL----ALQFVGS---LS 397
D +D++ ++ L ++ PQ+ R L F D AL+ LS
Sbjct: 68 DGIDISTIPLEDLRSSLTIIPQDPTLFSGTIRSNLDPFDEYSDEEIYGALRVSEGGLNLS 127
Query: 398 GGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINK 440
GQ+ + AR + P LVLDE T +D T + K I +
Sbjct: 128 QGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIRE 170
>gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein;
Provisional.
Length = 501
Score = 49.9 bits (120), Expect = 2e-06
Identities = 47/154 (30%), Positives = 64/154 (41%), Gaps = 30/154 (19%)
Query: 310 GDNGAGKTTLLKIIMGIISPTAGTRTVH-RNLKFG-------------YFSQHHVDQLDM 355
G+NGAGK+TLLKI+ G P AG+ + + ++F Y H V ++ +
Sbjct: 37 GENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGVAIIYQELHLVPEMTV 96
Query: 356 --NLRCVQLLEAAFPGKP--------QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVA 405
NL QL P K E R QL GV D + LS GQ+ V
Sbjct: 97 AENLYLGQL-----PHKGGIVNRRLLNYEAREQLEHLGVDIDPDTP-LKYLSIGQRQMVE 150
Query: 406 FARMCMAAPNFLVLDEPTNHLDIETIEALGKAIN 439
A+ + DEPT+ L IE L + I
Sbjct: 151 IAKALARNARVIAFDEPTSSLSAREIEQLFRVIR 184
>gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding
cassette component of monosaccharide transport system.
This family represents domain II of the carbohydrate
uptake proteins that transport only monosaccharides
(Monos). The Carb_Monos family is involved in the uptake
of monosaccharides, such as pentoses (such as xylose,
arabinose, and ribose) and hexoses (such as xylose,
arabinose, and ribose), that cannot be broken down to
simple sugars by hydrolysis. In members of Carb_Monos
family the single hydrophobic gene product forms a
homodimer, while the ABC protein represents a fusion of
two nucleotide-binding domains. However, it is assumed
that two copies of the ABC domains are present in the
assembled transporter.
Length = 182
Score = 47.4 bits (114), Expect = 2e-06
Identities = 33/149 (22%), Positives = 56/149 (37%), Gaps = 42/149 (28%)
Query: 306 ICIVGDNGAGKTTLLKIIMGIISPTAGT-----RTVHR-------NLKFGYFSQHHVDQL 353
+ I G G G+T L + + G+ P +G + V R Y
Sbjct: 29 VGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIAYVP------- 81
Query: 354 DMNLRCVQLLEAAFPGKPQEEYRRQ--LGGFGVSGDLALQFVGSLSGGQKSRVAFARMCM 411
E+ +R+ + V+ ++AL + LSGG + +V AR
Sbjct: 82 -------------------EDRKREGLVLDLSVAENIALSSL--LSGGNQQKVVLARWLA 120
Query: 412 AAPNFLVLDEPTNHLDIETIEALGKAINK 440
P L+LDEPT +D+ + + I +
Sbjct: 121 RDPRVLILDEPTRGVDVGAKAEIYRLIRE 149
>gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding
protein UrtD. Members of this protein family are ABC
transporter ATP-binding subunits associated with urea
transport and metabolism. This protein is found in a
conserved five-gene transport operon typically found
adjacent to urease genes. It was shown in Cyanobacteria
that disruption leads to the loss of high-affinity urea
transport activity [Transport and binding proteins,
Amino acids, peptides and amines].
Length = 242
Score = 47.9 bits (115), Expect = 3e-06
Identities = 42/141 (29%), Positives = 58/141 (41%), Gaps = 25/141 (17%)
Query: 307 CIVGDNGAGKTTLLKIIMGIISPTAGT----------RTVHR--NL----KF---GYFSQ 347
I+G NGAGKTT++ +I G P G+ H+ KF F
Sbjct: 32 VIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFEN 91
Query: 348 HHV-DQLDMNL-RCVQLLEAAFPGKPQEEYRR---QLGGFGVSGDLALQFVGSLSGGQKS 402
V + L++ L R + + F EE R L G+ D A + G LS GQK
Sbjct: 92 LTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGL-ADEADRLAGLLSHGQKQ 150
Query: 403 RVAFARMCMAAPNFLVLDEPT 423
+ + M P L+LDEP
Sbjct: 151 WLEIGMLLMQDPKLLLLDEPV 171
>gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase
L inhibitor. The ABC ATPase RNase L inhibitor (RLI) is
a key enzyme in ribosomal biogenesis, formation of
translation preinitiation complexes, and assembly of HIV
capsids. RLI's are not transport proteins, and thus
cluster with a group of soluble proteins that lack the
transmembrane components commonly found in other members
of the family. Structurally, RLI's have an N-terminal
Fe-S domain and two nucleotide-binding domains, which
are arranged to form two composite active sites in their
interface cleft. RLI is one of the most conserved
enzymes between archaea and eukaryotes with a sequence
identity more than 48%. The high degree of evolutionary
conservation suggests that RLI performs a central role
in archaeal and eukaryotic physiology.
Length = 177
Score = 47.2 bits (112), Expect = 3e-06
Identities = 37/136 (27%), Positives = 48/136 (35%), Gaps = 46/136 (33%)
Query: 306 ICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEA 365
I IVG NG GKTT +KI+ G + P D+ D
Sbjct: 28 IGIVGPNGTGKTTAVKILAGQLIPNGDN-----------------DEWDGITPVY----- 65
Query: 366 AFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNH 425
KPQ LSGG+ RVA A + F + DEP+ +
Sbjct: 66 ----KPQYI--------------------DLSGGELQRVAIAAALLRNATFYLFDEPSAY 101
Query: 426 LDIETIEALGKAINKY 441
LDIE +AI +
Sbjct: 102 LDIEQRLNAARAIRRL 117
>gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 276
Score = 48.2 bits (114), Expect = 3e-06
Identities = 46/174 (26%), Positives = 72/174 (41%), Gaps = 24/174 (13%)
Query: 289 GKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQH 348
GK +L V +G + ++G G+GKTT L+ + + +G R L G +
Sbjct: 33 GKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFN 92
Query: 349 HVDQLDMNLRCVQLLEAA--FPGK---------------PQEEYR-------RQLGGFGV 384
+ D L+ R L + FP P++E+R ++G +
Sbjct: 93 YRDVLEFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDA 152
Query: 385 SGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAI 438
D LSGGQ+ + AR P L+LDEPT+ LD T E + + I
Sbjct: 153 VKDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFI 206
>gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular
activities. AAA - ATPases associated with a variety of
cellular activities. This profile/alignment only detects
a fraction of this vast family. The poorly conserved
N-terminal helix is missing from the alignment.
Length = 148
Score = 46.6 bits (110), Expect = 3e-06
Identities = 35/129 (27%), Positives = 44/129 (34%), Gaps = 34/129 (26%)
Query: 306 ICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEA 365
I IVG G+GKTTL + + + P G Y
Sbjct: 5 ILIVGPPGSGKTTLARALARELGPPGG--------GVIYID------------------- 37
Query: 366 AFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNH 425
EE QL V G S SG + R+A A P+ L+LDE T+
Sbjct: 38 --GEDILEEVLDQLLLIIVGGK-----KASGSGELRLRLALALARKLKPDVLILDEITSL 90
Query: 426 LDIETIEAL 434
LD E L
Sbjct: 91 LDAEQEALL 99
>gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system,
ATPase component [Amino acid transport and metabolism].
Length = 386
Score = 48.5 bits (116), Expect = 3e-06
Identities = 39/151 (25%), Positives = 58/151 (38%), Gaps = 42/151 (27%)
Query: 307 CIVGDNGAGKTTLLKIIMGIISPTAGT----------------RTVHRNL------KFGY 344
I+G +G+GK+TL++++ +I PT G R + R F
Sbjct: 58 VIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFAL 117
Query: 345 FSQHHVDQLDMNLRCVQLLEAAFP----GKPQEEYRR----QLGGFGVSGDLALQFVGSL 396
V L AF G P+ E L G+ G A ++ L
Sbjct: 118 LPHRTV-----------LENVAFGLEVQGVPKAEREERALEALELVGLEG-YADKYPNEL 165
Query: 397 SGGQKSRVAFARMCMAAPNFLVLDEPTNHLD 427
SGG + RV AR P+ L++DE + LD
Sbjct: 166 SGGMQQRVGLARALANDPDILLMDEAFSALD 196
>gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional.
Length = 272
Score = 47.9 bits (114), Expect = 4e-06
Identities = 45/156 (28%), Positives = 68/156 (43%), Gaps = 35/156 (22%)
Query: 308 IVGDNGAGKTTLLKIIMGIISPTAGTR--TVHRNLKFGYFSQHHVDQLDM-NLRCV--QL 362
++G NGAGK+TLLK + G ++ R V ++ +D + LR V Q
Sbjct: 32 LLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRLARLRAVLPQA 91
Query: 363 LEAAFPGKPQE-------EYRRQLGGFGV-SGDLALQF-------------VGSLSGGQK 401
+ AF +E + R+ G G++A Q V +LSGG+
Sbjct: 92 AQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGEL 151
Query: 402 SRVAFARM---------CMAAPNFLVLDEPTNHLDI 428
+RV FAR+ P +L+LDEPT LD+
Sbjct: 152 ARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDL 187
>gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase
component [Amino acid transport and metabolism].
Length = 256
Score = 47.8 bits (114), Expect = 4e-06
Identities = 46/178 (25%), Positives = 77/178 (43%), Gaps = 30/178 (16%)
Query: 292 ILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVH---------RNLKF 342
+L V L A I I+G +G+GK+T L+ I + P+AG+ V+ ++ +
Sbjct: 21 VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQL 80
Query: 343 GYFSQHHVDQLDMNLRCV--------------QLLEAAFP--GKPQEEYRRQ----LGGF 382
+ + +L L V ++EA G + E + L
Sbjct: 81 KPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKV 140
Query: 383 GVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINK 440
G++ + A + LSGGQ+ RVA AR P ++ DEPT+ LD E + + K +
Sbjct: 141 GIA-EKADAYPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQD 197
>gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit;
Provisional.
Length = 377
Score = 48.3 bits (115), Expect = 4e-06
Identities = 44/169 (26%), Positives = 66/169 (39%), Gaps = 48/169 (28%)
Query: 289 GKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGT--------------- 333
G+ + +V L ++G +G GK+TLL+++ G PTAG
Sbjct: 31 GQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQ 90
Query: 334 ---------------RTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQ 378
TV +N+ FG Q + + ++ R ++L QE +R+
Sbjct: 91 RPINMMFQSYALFPHMTVEQNIAFG-LKQDKLPKAEIASRVNEMLGLV---HMQEFAKRK 146
Query: 379 LGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD 427
LSGGQ+ RVA AR P L+LDEP LD
Sbjct: 147 --------------PHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALD 181
>gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding
subunit; Provisional.
Length = 265
Score = 47.9 bits (114), Expect = 4e-06
Identities = 49/180 (27%), Positives = 75/180 (41%), Gaps = 37/180 (20%)
Query: 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRIC-IVGDNGAGKTTLLKIIMGIISPTAGTR 334
L V+F VPG+ +L + L ++ ++G NG+GK+TLLK++ P+ G
Sbjct: 11 TFALRNVSFR-VPGRTLLHPLSLTFPA-GKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEI 68
Query: 335 TVHRNL-----------KFGYFSQHHVDQLDMNLRCVQLLEAA-FPGKPQEEYRRQLGGF 382
+ K Y Q M +R +L+ +P + LG F
Sbjct: 69 LLDAQPLESWSSKAFARKVAYLPQQLPAAEGMTVR--ELVAIGRYP------WHGALGRF 120
Query: 383 GVSG--------------DLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDI 428
G + LA + V SLSGG++ R A + L+LDEPT+ LDI
Sbjct: 121 GAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDI 180
>gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding
protein YecC; Provisional.
Length = 250
Score = 47.4 bits (113), Expect = 5e-06
Identities = 51/163 (31%), Positives = 71/163 (43%), Gaps = 38/163 (23%)
Query: 306 ICIVGDNGAGKTTLLKIIMGIISPTAGTRTV-------HRNLKFGYFSQHHVDQLDMNLR 358
+ I+G +G+GKTTLL+ I + P AGT V R+L + + QL ++
Sbjct: 32 VAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQ---QKGLIRQLRQHVG 88
Query: 359 CVQLLEAAFP----------------GKPQEEY----RRQLGGFGVSGDLALQFVGSLSG 398
V FP G+P+EE R L G++G + LSG
Sbjct: 89 FVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGK-ETSYPRRLSG 147
Query: 399 GQKSRVAFARMCMAAPNFLVLDEPTNHLDIE-------TIEAL 434
GQ+ RVA AR P ++ DEPT+ LD E TI L
Sbjct: 148 GQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQL 190
>gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP)
Family protein. [Transport and binding proteins,
Other].
Length = 617
Score = 48.5 bits (116), Expect = 5e-06
Identities = 43/166 (25%), Positives = 68/166 (40%), Gaps = 33/166 (19%)
Query: 290 KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISP---TAGTRTVH---RNLKFG 343
K +L NV A + ++G +GAGKTTL+ + +G+ ++ + K
Sbjct: 38 KHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEM 97
Query: 344 YFSQHHVDQLDMNLRCVQLLEA-------------AFPGKPQ--EEYRRQLG-------G 381
+V Q D+ + + + E K + +E + LG
Sbjct: 98 RAISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTR 157
Query: 382 FGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD 427
GV G V LSGG++ R+AFA + P L DEPT+ LD
Sbjct: 158 IGVPGR-----VKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLD 198
>gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional.
Length = 248
Score = 47.2 bits (113), Expect = 5e-06
Identities = 46/160 (28%), Positives = 65/160 (40%), Gaps = 35/160 (21%)
Query: 308 IVGDNGAGKTTLLKIIMGIISPTAGTRTV---------------HRNLKFGYFSQHHVDQ 352
+VG NGAGK+TLL + G++ P +G+ HR Y SQ
Sbjct: 27 LVGPNGAGKSTLLARMAGLL-PGSGSIQFAGQPLEAWSAAELARHR----AYLSQQQTPP 81
Query: 353 LDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQ-----FVGSLSGGQKSRVAFA 407
M + Q L P K + E V+ L L V LSGG+ RV A
Sbjct: 82 FAMPV--FQYLTLHQPDKTRTEAVASALNE-VAEALGLDDKLGRSVNQLSGGEWQRVRLA 138
Query: 408 RMCM-----AAPN--FLVLDEPTNHLDIETIEALGKAINK 440
+ + P L+LDEP N LD+ AL + +++
Sbjct: 139 AVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSE 178
>gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 258
Score = 47.4 bits (113), Expect = 5e-06
Identities = 50/193 (25%), Positives = 78/193 (40%), Gaps = 44/193 (22%)
Query: 271 LLSPPILQLSEVNFEYVPGKPILTNVCLGATLESR----ICIVGDNGAGKTTLLKIIMGI 326
++ P+L +S ++ Y PGK C + + + IVG++G+GKTTLLK I G
Sbjct: 1 MMDKPLLSVSGLSKLYGPGKG-----CRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGR 55
Query: 327 ISPTAGTRTVH-----------------RNL---KFGYFSQHHVDQLDMNLRCVQLLEAA 366
++P AGT T R L ++G+ Q+ D L M +
Sbjct: 56 LTPDAGTVTYRMRDGQPRDLYTMSEAERRRLLRTEWGFVHQNPRDGLRMQVSA----GGN 111
Query: 367 FPGKPQEEYRRQLGGFGVSGDLALQFV-----------GSLSGGQKSRVAFARMCMAAPN 415
+ R G L+ V + SGG + R+ AR + P
Sbjct: 112 IGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQIARNLVTRPR 171
Query: 416 FLVLDEPTNHLDI 428
+ +DEPT LD+
Sbjct: 172 LVFMDEPTGGLDV 184
>gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit;
Provisional.
Length = 242
Score = 46.9 bits (112), Expect = 7e-06
Identities = 22/43 (51%), Positives = 25/43 (58%)
Query: 387 DLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIE 429
A +F LSGGQ+ RVA AR M P L+ DEPT LD E
Sbjct: 133 PYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPE 175
>gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 46.9 bits (111), Expect = 7e-06
Identities = 46/181 (25%), Positives = 67/181 (37%), Gaps = 27/181 (14%)
Query: 273 SPPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAG 332
+L +VN Y K + NV L + ++G +G GKTT L+ I + T G
Sbjct: 1 MTLLLSAQDVNI-YYGDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPG 59
Query: 333 TRTVHRNLKFGY-FSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSG----- 386
R R L G VD + M R + + P + + G ++G
Sbjct: 60 ARVTGRILLDGQDIYGPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRD 119
Query: 387 --------------------DLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHL 426
D LSGGQ+ R+ AR P L++DEPT+ L
Sbjct: 120 HLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSAL 179
Query: 427 D 427
D
Sbjct: 180 D 180
>gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein;
Provisional.
Length = 501
Score = 47.7 bits (114), Expect = 7e-06
Identities = 21/51 (41%), Positives = 32/51 (62%)
Query: 391 QFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441
Q +G LSGG + +VA AR M P L+LDEPT +D+ + + + IN++
Sbjct: 391 QAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQF 441
Score = 45.8 bits (109), Expect = 3e-05
Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 275 PILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGT 333
+LQL ++ + PG L+ L + +VG+NGAGK+T++K++ GI + AG+
Sbjct: 3 ALLQLKGIDKAF-PGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGS 60
>gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding
protein LsrA; Provisional.
Length = 510
Score = 47.7 bits (114), Expect = 8e-06
Identities = 47/149 (31%), Positives = 61/149 (40%), Gaps = 21/149 (14%)
Query: 308 IVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEAAF 367
++G NGAGK+TL+KII GI+ P +GT + N + QL + L V F
Sbjct: 42 LLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNP-CARLTPAKAHQLGIYL--VPQEPLLF 98
Query: 368 PG------------KPQEEYRR---QLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMA 412
P K Q ++ L G DL GSL + V R M
Sbjct: 99 PNLSVKENILFGLPKRQASMQKMKQLLAALGCQLDLDSS-AGSLEVADRQIVEILRGLMR 157
Query: 413 APNFLVLDEPTNHLD-IETIEALGKAINK 440
L+LDEPT L ET E L I +
Sbjct: 158 DSRILILDEPTASLTPAET-ERLFSRIRE 185
Score = 43.1 bits (102), Expect = 2e-04
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 3/56 (5%)
Query: 373 EEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDI 428
E YRR L + + A Q +LSGG + +V A+ A+P L++DEPT +D+
Sbjct: 384 ERYRRALN---IKFNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDV 436
>gnl|CDD|184131 PRK13546, PRK13546, teichoic acids export protein ATP-binding
subunit; Provisional.
Length = 264
Score = 46.7 bits (111), Expect = 8e-06
Identities = 36/135 (26%), Positives = 61/135 (45%), Gaps = 11/135 (8%)
Query: 293 LTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKF-----GYFSQ 347
L ++ L A I +VG NG+GK+TL II G +SPT G + + G Q
Sbjct: 40 LDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGEVSVIAISAGLSGQ 99
Query: 348 -HHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAF 406
++ ++ + C+ F K + ++ F G+ Q V S G ++++ F
Sbjct: 100 LTGIENIEFKMLCM-----GFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGF 154
Query: 407 ARMCMAAPNFLVLDE 421
+ P+ LV+DE
Sbjct: 155 SINITVNPDILVIDE 169
>gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein;
Provisional.
Length = 272
Score = 46.8 bits (111), Expect = 1e-05
Identities = 47/192 (24%), Positives = 75/192 (39%), Gaps = 47/192 (24%)
Query: 271 LLSPPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPT 330
++ + +++V + G L + S +VG NG+GK+TL K +MG +
Sbjct: 1 MMQQAGIVVNDVTVTWRNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLA 60
Query: 331 AGT---------RTVHRNLKFGYFSQHH---------VDQLDMNLRC------------- 359
+G + + +NL Y Q V+ + M R
Sbjct: 61 SGKISILGQPTRQALQKNL-VAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRD 119
Query: 360 VQLLEAAFPGKPQEEYR-RQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLV 418
Q++ AA E+R RQ +G LSGGQK RV AR ++
Sbjct: 120 RQIVTAALARVDMVEFRHRQ--------------IGELSGGQKKRVFLARAIAQQGQVIL 165
Query: 419 LDEPTNHLDIET 430
LDEP +D++T
Sbjct: 166 LDEPFTGVDVKT 177
>gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 320
Score = 46.8 bits (111), Expect = 1e-05
Identities = 40/156 (25%), Positives = 60/156 (38%), Gaps = 34/156 (21%)
Query: 307 CIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMN---------L 357
I+G++G+GK+TL+ G+I GT V ++ G +H + L
Sbjct: 56 FIIGNSGSGKSTLVTHFNGLIKSKYGTIQV-GDIYIGDKKNNHELITNPYSKKIKNFKEL 114
Query: 358 RCVQLLEAAFP--------------------GKPQEEYRRQ----LGGFGVSGDLALQFV 393
R + FP G + E ++ L G+ +
Sbjct: 115 RRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSP 174
Query: 394 GSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIE 429
LSGGQK RVA A + P L+ DEPT LD +
Sbjct: 175 FGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPK 210
>gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC. SufC is part of the SUF
system, shown in E. coli to consist of six proteins and
believed to act in Fe-S cluster formation during
oxidative stress. SufC forms a complex with SufB and
SufD. SufC belongs to the ATP-binding cassette
transporter family (pfam00005) but is no longer thought
to be part of a transporter. The complex is reported as
cytosolic (PMID:12554644) or associated with the
membrane (PMID:11943156). The SUF system also includes a
cysteine desulfurase (SufS, enhanced by SufE) and a
probable iron-sulfur cluster assembly scaffold protein,
SufA [Biosynthesis of cofactors, prosthetic groups, and
carriers, Other].
Length = 243
Score = 46.1 bits (110), Expect = 1e-05
Identities = 44/183 (24%), Positives = 71/183 (38%), Gaps = 30/183 (16%)
Query: 287 VPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMG----IISPTAGTRT------- 335
V K IL V L I+G NG+GK+TL K I G + T+GT
Sbjct: 10 VEDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEV--TSGTILFKGQDLL 67
Query: 336 ---VHRNLKFGYF--SQHHVD----QLDMNLRCVQLLEAAFPGKP-------QEEYRRQL 379
+ G F Q+ + LR + G+ + + +L
Sbjct: 68 ELEPDERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKL 127
Query: 380 GGFGVSGDLALQFVG-SLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAI 438
G+ + + V SGG+K R +M + P +LDE + LDI+ ++ + + I
Sbjct: 128 ALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGI 187
Query: 439 NKY 441
N+
Sbjct: 188 NRL 190
>gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted
acetyltransferase domain [General function prediction
only].
Length = 593
Score = 47.1 bits (112), Expect = 1e-05
Identities = 48/213 (22%), Positives = 79/213 (37%), Gaps = 35/213 (16%)
Query: 251 PELKPIEKEVEV---VLKFPDTELLSPPILQLSE--VNFEYVPGKPILTNVCLGATLESR 305
+L+ K V D + L + E + V + +L N+ L
Sbjct: 352 EKLEGPIKFKNVTKTFASELDIKGLPNEFQDILESFGVRQRVIERYVLRNLNLEIKPGDV 411
Query: 306 ICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFG---YFSQHHVDQLDMNLRCVQL 362
+ +VG +GAGKTTLL++I+G G Y ++ N +
Sbjct: 412 VAVVGQSGAGKTTLLRMILGAQ------------KGRGEEKYRPDSGKVEVPKNTVSALI 459
Query: 363 ---LEAAFPGKP-QEEYRRQLGGFGVSGDL--------ALQFV---GSLSGGQKSRVAFA 407
E F E R + G + ++ A+ + LS GQK R A
Sbjct: 460 PGEYEPEFGEVTILEHLRSKTGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLA 519
Query: 408 RMCMAAPNFLVLDEPTNHLDIETIEALGKAINK 440
++ PN L++DE HLD T + + I++
Sbjct: 520 KLLAERPNVLLIDEFAAHLDELTAVRVARKISE 552
>gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein;
Reviewed.
Length = 240
Score = 45.1 bits (107), Expect = 3e-05
Identities = 40/141 (28%), Positives = 61/141 (43%), Gaps = 21/141 (14%)
Query: 308 IVGDNGAGKTTLLKII---------------MGIISPTAGTRTVHRNLKFGYFSQHHVDQ 352
I+G +G+GK+TLL+ I + + P R + + F Q ++
Sbjct: 32 IIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAGM-VFQQFYLFP 90
Query: 353 LDMNLRCVQLLEAAFPGKPQEEYRRQ----LGGFGVSGDLALQFVGSLSGGQKSRVAFAR 408
L V G +EE +Q L G++ + A + LSGGQ+ RVA AR
Sbjct: 91 HLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLA-ERAHHYPSELSGGQQQRVAIAR 149
Query: 409 MCMAAPNFLVLDEPTNHLDIE 429
P ++ DEPT+ LD E
Sbjct: 150 ALAVKPKLMLFDEPTSALDPE 170
>gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter
subunit; Provisional.
Length = 262
Score = 44.6 bits (105), Expect = 4e-05
Identities = 46/155 (29%), Positives = 70/155 (45%), Gaps = 30/155 (19%)
Query: 306 ICIVGDNGAGKTTLLKIIMGIIS--PTAGT------RTVHRNLKF-----------GYFS 346
+ ++G +G+GK+TLL+ + G+I+ +AG+ RTV R + GY
Sbjct: 33 VALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRANTGYIF 92
Query: 347 QHH--VDQLDM-------NLRCVQLLEAAFPGKPQEEYRRQLGGFGVSG--DLALQFVGS 395
Q V++L + L F +E+ +R L G A Q V +
Sbjct: 93 QQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVST 152
Query: 396 LSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIET 430
LSGGQ+ RVA AR M ++ DEP LD E+
Sbjct: 153 LSGGQQQRVAIARALMQQAKVILADEPIASLDPES 187
>gnl|CDD|184128 PRK13541, PRK13541, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 195
Score = 44.1 bits (104), Expect = 4e-05
Identities = 40/156 (25%), Positives = 62/156 (39%), Gaps = 32/156 (20%)
Query: 302 LESRICIV-GDNGAGKTTLLKIIMGIISPTAGTRTVHRN-------LKFGYFSQHHVDQL 353
L S I + G NG GK++LL++I GI+ P++G Y + +L
Sbjct: 24 LPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTYIGHNLGLKL 83
Query: 354 DM----NLR-------CVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKS 402
+M NL+ + L AA ++ DL + SLS G +
Sbjct: 84 EMTVFENLKFWSEIYNSAETLYAAI-----HYFKLH--------DLLDEKCYSLSSGMQK 130
Query: 403 RVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAI 438
VA AR+ + +LDE +L E + L I
Sbjct: 131 IVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLI 166
>gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 282
Score = 44.4 bits (105), Expect = 6e-05
Identities = 54/200 (27%), Positives = 81/200 (40%), Gaps = 51/200 (25%)
Query: 276 ILQLSEVNFEYVPGK-PILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTR 334
I++ V+F Y K P L ++ S ++G NG+GK+T+ K+I G++ P
Sbjct: 5 IVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPN 64
Query: 335 TVHRNLKFGYFSQHHVDQLDMNLRCV----------------QLLEA------AF----P 368
S+ VD + + + V Q + A AF
Sbjct: 65 -----------SKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENR 113
Query: 369 GKPQEEY----RRQLGGFGVSGDLALQFVGS----LSGGQKSRVAFARMCMAAPNFLVLD 420
P+ E R L G+ L ++ S LSGGQK RVA A + P ++LD
Sbjct: 114 AVPRPEMIKIVRDVLADVGM-----LDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILD 168
Query: 421 EPTNHLDIETIEALGKAINK 440
E T+ LD E + K I K
Sbjct: 169 ESTSMLDPAGKEQILKLIRK 188
>gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 277
Score = 44.3 bits (104), Expect = 7e-05
Identities = 46/172 (26%), Positives = 74/172 (43%), Gaps = 23/172 (13%)
Query: 276 ILQLSEVNFEYVPGKPI--LTNVCLGATLESRICIVGDNGAGKTTLLKIIMGI------I 327
IL++ + F+Y + L V T + I+G NG+GK+T ++I G+
Sbjct: 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGK 63
Query: 328 SPTAGTRTVHRNL-----KFGYFSQHHVDQLDMNLRCVQLLEAAF----PGKPQEEYRRQ 378
G N+ K G Q+ +Q + + AF G P+EE ++
Sbjct: 64 VKIDGELLTAENVWNLRRKIGMVFQNPDNQF---VGATVEDDVAFGMENQGIPREEMIKR 120
Query: 379 LGGFGVSG---DLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD 427
+ ++ D + LSGGQK RVA A + P ++LDE T+ LD
Sbjct: 121 VDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLD 172
>gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding
subunit; Provisional.
Length = 237
Score = 43.7 bits (103), Expect = 8e-05
Identities = 45/184 (24%), Positives = 70/184 (38%), Gaps = 57/184 (30%)
Query: 275 PILQLSEVNFEYVPGK-PILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGT 333
+L +V+ Y GK L V L + ++G NGAGKTTLL + G T+G
Sbjct: 4 VMLSFDKVSAHY--GKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGR 61
Query: 334 ---------------------------------RTVHRNLKFG-YFSQHHVDQLDMNLRC 359
TV NL G +F++ Q
Sbjct: 62 IVFDGKDITDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQ------- 114
Query: 360 VQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVL 419
+ ++ + P+ RR +Q G++SGG++ +A R M+ P L+L
Sbjct: 115 -ERIKWVYELFPRLHERR------------IQRAGTMSGGEQQMLAIGRALMSQPRLLLL 161
Query: 420 DEPT 423
DEP+
Sbjct: 162 DEPS 165
>gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional.
Length = 1466
Score = 44.6 bits (105), Expect = 1e-04
Identities = 35/121 (28%), Positives = 55/121 (45%), Gaps = 15/121 (12%)
Query: 320 LKIIMGIIS--PTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRR 377
L+ + I+S P +++ N+KFG + + D+ C F +Y
Sbjct: 1294 LRNLFSIVSQEPMLFNMSIYENIKFG---KEDATREDVKRACKFAAIDEFIESLPNKYDT 1350
Query: 378 QLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKA 437
+G +G SLSGGQK R+A AR + P L+LDE T+ LD + + + K
Sbjct: 1351 NVGPYG----------KSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKT 1400
Query: 438 I 438
I
Sbjct: 1401 I 1401
Score = 43.9 bits (103), Expect = 2e-04
Identities = 23/52 (44%), Positives = 31/52 (59%), Gaps = 4/52 (7%)
Query: 392 FVGS----LSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAIN 439
VGS LSGGQK R++ AR + P L+LDE T+ LD ++ + K IN
Sbjct: 572 LVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTIN 623
Score = 35.4 bits (81), Expect = 0.062
Identities = 15/50 (30%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Query: 277 LQLSEVNFEYV--PGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIM 324
+++ +VNF Y+ P PI ++ + IVG+ G+GK+T++ ++M
Sbjct: 1166 IEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLM 1215
Score = 31.5 bits (71), Expect = 1.2
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
Query: 277 LQLSEVNFEYVPGKPILTNVCLGATLES--RICIVGDNGAGKTTLLKIIMGIISPTAGTR 334
+Q V F Y K + L TL VG++G GK+T+LK+I + PT G
Sbjct: 383 IQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDI 442
Query: 335 TVH--RNLK 341
++ NLK
Sbjct: 443 IINDSHNLK 451
>gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding
subunit; Provisional.
Length = 255
Score = 43.1 bits (102), Expect = 1e-04
Identities = 46/163 (28%), Positives = 61/163 (37%), Gaps = 41/163 (25%)
Query: 306 ICIVGDNGAGKTTLLKIIMGIISPTAGT-------------------------------- 333
+ ++G NGAGKTT+ + G PT GT
Sbjct: 34 VSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGVVRTFQHVRLFR 93
Query: 334 -RTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSG--DLAL 390
TV NL +QH QL L L AF E R G + A
Sbjct: 94 EMTVIENL---LVAQHQ--QLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHAN 148
Query: 391 QFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD-IETIE 432
+ G+L+ GQ+ R+ AR + P L+LDEP L+ ET E
Sbjct: 149 RQAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKE 191
>gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit;
Provisional.
Length = 327
Score = 43.4 bits (103), Expect = 1e-04
Identities = 16/32 (50%), Positives = 22/32 (68%)
Query: 397 SGGQKSRVAFARMCMAAPNFLVLDEPTNHLDI 428
SGGQ+ R+A AR M P+ +V DEP + LD+
Sbjct: 156 SGGQRQRIAIARALMLDPDVVVADEPVSALDV 187
Score = 29.2 bits (66), Expect = 4.9
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 14/55 (25%)
Query: 279 LSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGT 333
L V+F GK TL +VG++G GK+TL +++ I +PT G
Sbjct: 31 LDGVSFTLERGK----------TL----AVVGESGCGKSTLARLLTMIETPTGGE 71
>gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein;
Provisional.
Length = 582
Score = 43.9 bits (104), Expect = 1e-04
Identities = 19/46 (41%), Positives = 29/46 (63%)
Query: 395 SLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINK 440
LSGGQ+ R+A AR + L+LDE T+ LD E+ A+ A+++
Sbjct: 480 LLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDE 525
>gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system,
duplicated ATPase component [General function prediction
only].
Length = 534
Score = 43.8 bits (104), Expect = 1e-04
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 397 SGGQKSRVAFARMCMAAPNFLVLDEPTNHLD 427
SGGQ+ R+A AR + P ++LDEPT+ LD
Sbjct: 428 SGGQRQRIAIARALILKPELILLDEPTSALD 458
Score = 41.5 bits (98), Expect = 8e-04
Identities = 16/35 (45%), Positives = 20/35 (57%)
Query: 396 LSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIET 430
LSGGQ+ RV A P+ L+ DEPT LD+
Sbjct: 158 LSGGQRQRVMIAMALANEPDLLIADEPTTALDVTV 192
>gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit;
Provisional.
Length = 506
Score = 43.8 bits (104), Expect = 1e-04
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 393 VGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDI 428
+ LSGG + + A+ + P L+LDEPT +D+
Sbjct: 403 IARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDV 438
Score = 36.4 bits (85), Expect = 0.028
Identities = 45/199 (22%), Positives = 70/199 (35%), Gaps = 69/199 (34%)
Query: 272 LSPPILQLSEVNFEYVPGKPILTNVCLGATLESRICI--VGDNGAGKTTLLKIIMGI--- 326
+ +L++ + + G L NV L + + + G+NGAGK+TL+K++ G+
Sbjct: 1 MMEYLLEMKNITKTF-GGVKALDNVSL--KVRAGEIVSLCGENGAGKSTLMKVLSGVYPH 57
Query: 327 ------------------ISPT--AGTRTVHRNL-------------------KFGYFSQ 347
I T AG +H+ L G
Sbjct: 58 GTYEGEIIFEGEELQASNIRDTERAGIAIIHQELALVKELSVLENIFLGNEITPGGI--- 114
Query: 348 HHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFA 407
+D M LR +LL QL ++ VG+L GQ+ V A
Sbjct: 115 --MDYDAMYLRAQKLL-------------AQL-KLDINPATP---VGNLGLGQQQLVEIA 155
Query: 408 RMCMAAPNFLVLDEPTNHL 426
+ L+LDEPT L
Sbjct: 156 KALNKQARLLILDEPTASL 174
>gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding
protein. This model represents the ATP-binding protein
of a family of ABC transporters for inorganic phosphate.
In the model species Escherichia coli, a constitutive
transporter for inorganic phosphate, with low affinity,
is also present. The high affinity transporter that
includes this polypeptide is induced when extracellular
phosphate concentrations are low. The proteins most
similar to the members of this family but not included
appear to be amino acid transporters [Transport and
binding proteins, Anions].
Length = 247
Score = 42.7 bits (101), Expect = 1e-04
Identities = 22/43 (51%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 395 SLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD-IET--IEAL 434
LSGGQ+ R+ AR P L+LDEPT+ LD I T IE L
Sbjct: 144 GLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEEL 186
>gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 289
Score = 43.1 bits (101), Expect = 2e-04
Identities = 49/174 (28%), Positives = 68/174 (39%), Gaps = 25/174 (14%)
Query: 279 LSEVNFEYVPGKPI----LTNVCLGATLESRICIVGDNGAGKTTLLKIIMG-IISPTAGT 333
L V++ Y P L N L C++G G+GK+T++++ G IIS T T
Sbjct: 9 LDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQT 68
Query: 334 RTVHRNLKFGYFSQHHVDQLDMNLRCV------QLLEAAFP-----------GKPQEEYR 376
+ V +L + V QL + QE Y+
Sbjct: 69 IVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYK 128
Query: 377 R---QLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD 427
+ L + D + LSGGQK RVA A + N LVLDEPT LD
Sbjct: 129 KVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLD 182
>gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 287
Score = 42.7 bits (101), Expect = 2e-04
Identities = 19/32 (59%), Positives = 21/32 (65%)
Query: 396 LSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD 427
LSGGQK RVA A + P L+LDEPT LD
Sbjct: 145 LSGGQKRRVAIAGVVAMEPKILILDEPTAGLD 176
>gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein;
Provisional.
Length = 252
Score = 42.5 bits (100), Expect = 2e-04
Identities = 23/54 (42%), Positives = 30/54 (55%), Gaps = 8/54 (14%)
Query: 395 SLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD------IETIEALGKAINKYT 442
LSGGQ+ RV AR+ +P ++LDEPT+ LD IE E L + YT
Sbjct: 148 GLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIE--ETLLGLKDDYT 199
>gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase
component [Coenzyme metabolism].
Length = 248
Score = 42.5 bits (100), Expect = 2e-04
Identities = 41/148 (27%), Positives = 60/148 (40%), Gaps = 19/148 (12%)
Query: 308 IVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKF----------GYFSQHHVDQLDMNL 357
+VG NGAGK+TLL + G+ S + + + L+ Y SQ M +
Sbjct: 30 LVGPNGAGKSTLLARMAGMTSGSGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMPV 89
Query: 358 RCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMA----- 412
L P K + E + G D + LSGG+ RV A + +
Sbjct: 90 --WHYLTLHQPDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDA 147
Query: 413 --APNFLVLDEPTNHLDIETIEALGKAI 438
A L+LDEP N LD+ AL + +
Sbjct: 148 NPAGQLLLLDEPMNSLDVAQQSALDRLL 175
>gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 42.3 bits (99), Expect = 2e-04
Identities = 18/33 (54%), Positives = 24/33 (72%)
Query: 395 SLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD 427
SLSGGQ+ RV AR+ P+ ++LDEPT+ LD
Sbjct: 148 SLSGGQQQRVCIARVLAVKPDVILLDEPTSALD 180
>gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug
resistance-like (PDR) subfamily G of ATP-binding
cassette transporters. The pleiotropic drug resistance
(PDR) is a well-described phenomenon occurring in fungi
and shares several similarities with processes in
bacteria and higher eukaryotes. This PDR subfamily
represents domain I of its (ABC-IM)2 organization. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds
including sugars, ions, peptides, and more complex
organic molecules. The nucleotide binding domain shows
the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 192
Score = 41.5 bits (98), Expect = 3e-04
Identities = 43/184 (23%), Positives = 76/184 (41%), Gaps = 48/184 (26%)
Query: 274 PPILQLSEVNFEYVPG----KPILTNV---CLGATLESRICIVGDNGAGKTTLLKII--- 323
+L +N+ VP + +L N+ TL + ++G++GAGKTTLL ++
Sbjct: 1 GSVLTWKNLNY-TVPVKGGKRQLLNNISGYVKPGTLTA---LMGESGAGKTTLLDVLAGR 56
Query: 324 --MGIISPTAGTRTVHRNLKFGYFSQH--HVDQLDMNLRCVQLLEAAFPGKPQEEYRRQL 379
G+I+ G ++ F + +V+Q D++ + + E
Sbjct: 57 KTAGVIT---GEILINGRPLDKNFQRSTGYVEQQDVHSPNLTVRE--------------- 98
Query: 380 GGFGVSGDLALQFVGSLSG---GQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGK 436
AL+F L G Q+ R+ A P+ L LDEPT+ LD + + +
Sbjct: 99 ---------ALRFSALLRGLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVR 149
Query: 437 AINK 440
+ K
Sbjct: 150 FLKK 153
>gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter. This model
describes cyclic peptide transporter in bacteria.
Bacteria have elaborate pathways for the production of
toxins and secondary metabolites. Many such compounds,
including syringomycin and pyoverdine are synthesized on
non-ribosomal templates consisting of a multienzyme
complex. On several occasions the proteins of the
complex and transporter protein are present on the same
operon. Often times these compounds cross the biological
membrane by specific transporters. Syringomycin is an
amphipathic, cylclic lipodepsipeptide when inserted into
host causes formation of channels, permeable to variety
of cations. On the other hand, pyoverdine is a cyclic
octa-peptidyl dihydroxyquinoline, which is efficient in
sequestering iron for uptake [Transport and binding
proteins, Amino acids, peptides and amines, Transport
and binding proteins, Other].
Length = 555
Score = 42.6 bits (100), Expect = 3e-04
Identities = 32/129 (24%), Positives = 51/129 (39%), Gaps = 20/129 (15%)
Query: 308 IVGDNGAGKTTLLKIIMGIISPTAG------------TRTVHRNLKFGYFSQHHVDQLDM 355
IVG+NG GK+TL K+ G+ P G +R +R+L F+ H+
Sbjct: 373 IVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFD--- 429
Query: 356 NLRCVQLLEAAFPGKPQ-EEYRRQLG-GFGVS-GDLALQFVGSLSGGQKSRVAFARMCMA 412
+ E ++Y ++L V D +LS GQ+ R+A +
Sbjct: 430 --DLIGPDEGEHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLE 487
Query: 413 APNFLVLDE 421
L+ DE
Sbjct: 488 DRPILLFDE 496
>gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein
YejF; Provisional.
Length = 529
Score = 42.4 bits (100), Expect = 4e-04
Identities = 18/40 (45%), Positives = 28/40 (70%), Gaps = 1/40 (2%)
Query: 394 GSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEA 433
SGGQ+ R+A AR + P+ ++LDEPT+ LD +T++A
Sbjct: 424 AEFSGGQRQRIAIARALILKPSLIILDEPTSSLD-KTVQA 462
Score = 36.2 bits (84), Expect = 0.029
Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 396 LSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEA 433
LSGG++ RV A + P L+ DEPT LD+ +++A
Sbjct: 157 LSGGERQRVMIAMALLTRPELLIADEPTTALDV-SVQA 193
>gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein;
Provisional.
Length = 250
Score = 41.6 bits (98), Expect = 4e-04
Identities = 23/52 (44%), Positives = 30/52 (57%), Gaps = 4/52 (7%)
Query: 395 SLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD-IET--IEALGKAI-NKYT 442
LSGGQ+ R+ AR P L++DEPT+ LD I T IE L + + YT
Sbjct: 146 GLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYT 197
>gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding
protein; Provisional.
Length = 369
Score = 41.9 bits (99), Expect = 4e-04
Identities = 17/33 (51%), Positives = 24/33 (72%)
Query: 395 SLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD 427
+LSGGQ+ RVA R +A P+ +LDEP ++LD
Sbjct: 133 ALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLD 165
Score = 28.5 bits (64), Expect = 8.5
Identities = 12/24 (50%), Positives = 18/24 (75%)
Query: 309 VGDNGAGKTTLLKIIMGIISPTAG 332
VG +G GK+TLL++I G+ T+G
Sbjct: 35 VGPSGCGKSTLLRMIAGLEDITSG 58
>gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 271
Score = 41.5 bits (97), Expect = 4e-04
Identities = 52/178 (29%), Positives = 77/178 (43%), Gaps = 36/178 (20%)
Query: 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRT 335
+L S++ F Y +P+L + L +L +VG NG GK+TL + G++ P G
Sbjct: 1 MLATSDLWFRY-QDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGA-- 57
Query: 336 VHRNLKFGYFSQHHVDQLDMNLRCV------QLL------EAAFP----GKPQEEYRRQL 379
V K +S+ + L + V Q+ + AF G P+ E R++
Sbjct: 58 VLWQGKPLDYSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRV 117
Query: 380 GGFGVSGDLALQFVGS----------LSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD 427
D AL V + LS GQK RVA A + +L+LDEPT LD
Sbjct: 118 -------DEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLD 168
>gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional.
Length = 659
Score = 42.6 bits (100), Expect = 4e-04
Identities = 43/161 (26%), Positives = 70/161 (43%), Gaps = 26/161 (16%)
Query: 290 KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN---------L 340
+ IL V A+ + ++G +G+GK+TLL + G I T T+ N
Sbjct: 81 RTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILK 140
Query: 341 KFGYFSQHHVDQLDMNLR----CVQLLEAAFPGKPQEEYRRQLGGFGVSGDLAL------ 390
+ G+ +Q + + +R LL QE + L V +L L
Sbjct: 141 RTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQE---KILVAESVISELGLTKCENT 197
Query: 391 ----QFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD 427
F+ +SGG++ RV+ A + P+ L+LDEPT+ LD
Sbjct: 198 IIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLD 238
>gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 41.5 bits (97), Expect = 4e-04
Identities = 40/160 (25%), Positives = 64/160 (40%), Gaps = 25/160 (15%)
Query: 293 LTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFG---YFSQHH 349
L + + +S + +G +G GK+T L++ + TR G Y
Sbjct: 19 LKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQ 78
Query: 350 VDQLDMNLRCVQLLEAAFP--------------GKPQEEYRRQ-----LGGFGVSGDLAL 390
VD+L N+ V FP G + RQ L G + ++
Sbjct: 79 VDELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKD 138
Query: 391 QFVGS---LSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD 427
+ S LSGGQ+ R+ AR +P+ L++DEP + LD
Sbjct: 139 KLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALD 178
>gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein;
Provisional.
Length = 260
Score = 41.1 bits (97), Expect = 5e-04
Identities = 22/43 (51%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 395 SLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD-IET--IEAL 434
SLSGGQ+ R+ AR P L+LDEP + LD I T IE L
Sbjct: 156 SLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEEL 198
>gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 41.1 bits (96), Expect = 6e-04
Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 4/52 (7%)
Query: 395 SLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD---IETIEALGKAIN-KYT 442
LSGGQ+ R+ AR P ++LDEPT+ LD + IE L + ++ YT
Sbjct: 146 RLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYT 197
>gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 286
Score = 41.3 bits (97), Expect = 6e-04
Identities = 49/186 (26%), Positives = 70/186 (37%), Gaps = 46/186 (24%)
Query: 277 LQLSEVNFEYVPGKPI----LTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAG 332
++ V++ Y G P + +V IVG G+GK+TL++ I ++ PT G
Sbjct: 3 IRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTG 62
Query: 333 TRTV---------------HRNLKFGYFSQHHVDQL----------------DMNLRCVQ 361
T TV + G Q QL MNL V+
Sbjct: 63 TVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVK 122
Query: 362 LLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDE 421
A R L G S D+ Q +SGGQ ++A + P+ +VLDE
Sbjct: 123 --NYAH---------RLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDE 171
Query: 422 PTNHLD 427
PT LD
Sbjct: 172 PTAGLD 177
>gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of
CFTR,subfamily C. The cystic fibrosis transmembrane
regulator (CFTR), the product of the gene mutated in
patients with cystic fibrosis, has adapted the ABC
transporter structural motif to form a tightly regulated
anion channel at the apical surface of many epithelia.
Use of the term assembly of a functional ion channel
implies the coming together of subunits or at least
smaller not-yet functional components of the active
whole. In fact, on the basis of current knowledge only
the CFTR polypeptide itself is required to form an ATP-
and protein kinase A-dependent low-conductance chloride
channel of the type present in the apical membrane of
many epithelial cells. CFTR displays the typical
organization (IM-ABC)2 and carries a characteristic
hydrophilic R-domain that separates IM1-ABC1 from
IM2-ABC2.
Length = 275
Score = 41.0 bits (96), Expect = 6e-04
Identities = 45/186 (24%), Positives = 73/186 (39%), Gaps = 47/186 (25%)
Query: 289 GKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQH 348
G +L N+ + R+ ++G G+GK+TLL + +++ T G
Sbjct: 16 GNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEG--------------DI 60
Query: 349 HVDQLDMNLRCVQLLEAAFPGKPQE------EYRRQLGGFGVSGDLAL------------ 390
+D + N +Q AF PQ+ +R+ L +G D +
Sbjct: 61 QIDGVSWNSVPLQKWRKAFGVIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSV 120
Query: 391 --QFVGS-----------LSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKA 437
QF G LS G K + AR ++ L+LDEP+ HLD T + + K
Sbjct: 121 IEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKT 180
Query: 438 INKYTF 443
+ K F
Sbjct: 181 L-KQAF 185
>gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 259
Score = 41.0 bits (96), Expect = 7e-04
Identities = 23/52 (44%), Positives = 31/52 (59%), Gaps = 4/52 (7%)
Query: 395 SLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD-IETI---EALGKAINKYT 442
SLSGGQ+ R+ AR P+ L++DEPT+ LD + T E + K KYT
Sbjct: 155 SLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYT 206
>gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 40.7 bits (95), Expect = 7e-04
Identities = 21/44 (47%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
Query: 394 GSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIET---IEAL 434
G LSGGQ+ R+ AR P L+ DEPT +LD E IE+L
Sbjct: 145 GKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESL 188
>gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE;
Provisional.
Length = 268
Score = 40.8 bits (96), Expect = 8e-04
Identities = 37/165 (22%), Positives = 68/165 (41%), Gaps = 27/165 (16%)
Query: 288 PGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGT-------------- 333
+ +L NV L + ++G +G GK+TL ++++G+ SP+ G
Sbjct: 23 QHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRA 82
Query: 334 --RTVHRNLK------FGYFS-QHHV-DQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFG 383
+ R+++ + + V + + LR + L+ A + L
Sbjct: 83 QRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKA---ERLARASEMLRAVD 139
Query: 384 VSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDI 428
+ + + LSGGQ RV AR P L+LDE ++LD+
Sbjct: 140 LDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDL 184
>gnl|CDD|184130 PRK13545, tagH, teichoic acids export protein ATP-binding subunit;
Provisional.
Length = 549
Score = 41.0 bits (96), Expect = 0.001
Identities = 37/131 (28%), Positives = 57/131 (43%), Gaps = 3/131 (2%)
Query: 293 LTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQ 352
L N+ + I+G NG+GK+TL +I G+ P GT + + S Q
Sbjct: 40 LNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAALIAISSGLNGQ 99
Query: 353 LDMNLRCVQL--LEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMC 410
L + ++L L + +E ++ F G Q V + S G KSR+ FA
Sbjct: 100 L-TGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISV 158
Query: 411 MAAPNFLVLDE 421
P+ LV+DE
Sbjct: 159 HINPDILVIDE 169
>gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 235
Score = 40.1 bits (94), Expect = 0.001
Identities = 44/162 (27%), Positives = 62/162 (38%), Gaps = 27/162 (16%)
Query: 291 PILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGT----------------- 333
P+L NV L + + G +G+GK+TLL+ + P G
Sbjct: 25 PVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEP 84
Query: 334 RTVH--RNLKFGYFSQH-----HVDQLDMNLRCVQLLEAAFPGK-PQEEYRRQLGGFGVS 385
R V R GY SQ V LD+ LL P + + + L +
Sbjct: 85 REVLEVRRTTIGYVSQFLRVIPRVSALDVVAE--PLLARGVPREVARAKAADLLTRLNLP 142
Query: 386 GDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD 427
L + SGG++ RV AR + L+LDEPT LD
Sbjct: 143 ERLWSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPTASLD 184
>gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 254
Score = 40.0 bits (93), Expect = 0.001
Identities = 17/33 (51%), Positives = 23/33 (69%)
Query: 395 SLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD 427
SLSGGQ+ R+ AR PN +++DEPT+ LD
Sbjct: 150 SLSGGQQQRLCIARTLAIEPNVILMDEPTSALD 182
>gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK;
Provisional.
Length = 258
Score = 40.3 bits (95), Expect = 0.001
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 14/59 (23%)
Query: 275 PILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGT 333
P +V+F+ PG+ +L IVG++G+GKTTLL + ++P AG
Sbjct: 18 PRKGCRDVSFDLYPGE-VL-------------GIVGESGSGKTTLLNALSARLAPDAGE 62
Score = 29.9 bits (68), Expect = 2.4
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 397 SGGQKSRVAFARMCMAAPNFLVLDEPTNHLDI 428
SGG + R+ AR + P + +DEPT LD+
Sbjct: 153 SGGMQQRLQIARNLVTHPRLVFMDEPTGGLDV 184
>gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter
membrane/ATP-binding component; Reviewed.
Length = 574
Score = 41.0 bits (97), Expect = 0.001
Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 7/79 (8%)
Query: 248 ERLPELKPIEKEVEVVLKFPDTELLSP--PILQLSEVNFEYVPGK-PILTNVCLGATLES 304
R+ E+ E++ EV FP T + L L+ V+F Y P+L + L
Sbjct: 312 RRINEI--TEQKPEVT--FPTTSTAAADQVSLTLNNVSFTYPDQPQPVLKGLSLQIKAGE 367
Query: 305 RICIVGDNGAGKTTLLKII 323
++ ++G G GK+TLL+++
Sbjct: 368 KVALLGRTGCGKSTLLQLL 386
Score = 36.3 bits (85), Expect = 0.035
Identities = 19/36 (52%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
Query: 396 LSGGQKSRVAFARMCMA-APNFLVLDEPTNHLDIET 430
LSGG++ R+ AR + AP L+LDEPT LD ET
Sbjct: 476 LSGGEQRRLGIARALLHDAP-LLLLDEPTEGLDAET 510
>gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 253
Score = 39.8 bits (93), Expect = 0.001
Identities = 15/34 (44%), Positives = 22/34 (64%)
Query: 394 GSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD 427
+LSGGQ+ R+ AR P L++DEPT ++D
Sbjct: 148 SNLSGGQRQRLVIARALAMKPKILLMDEPTANID 181
>gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding
protein ModF; Provisional.
Length = 490
Score = 40.4 bits (95), Expect = 0.002
Identities = 43/146 (29%), Positives = 63/146 (43%), Gaps = 29/146 (19%)
Query: 308 IVGDNGAGKTTLLKIIMGIISPTA--------GTR--------TVHRNLKFGYFS-QHHV 350
IVG NGAGK+TLL +I G P G R + +++ GY S H+
Sbjct: 291 IVGPNGAGKSTLLSLITG-DHPQGYSNDLTLFGRRRGSGETIWDIKKHI--GYVSSSLHL 347
Query: 351 D-QLDMNLRCVQL--------LEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQK 401
D ++ ++R V L + A + Q+ ++ L G+ A SLS GQ+
Sbjct: 348 DYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQ 407
Query: 402 SRVAFARMCMAAPNFLVLDEPTNHLD 427
R + P L+LDEP LD
Sbjct: 408 RLALIVRALVKHPTLLILDEPLQGLD 433
Score = 35.8 bits (83), Expect = 0.042
Identities = 35/158 (22%), Positives = 59/158 (37%), Gaps = 48/158 (30%)
Query: 308 IVGDNGAGKTTLLKIIMGIISPTAGTRTVH---------------------RNLK----- 341
VG NG+GK+ L + + G + +G R RN
Sbjct: 34 FVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSDEWQRNNTDMLSP 93
Query: 342 ----FGYFSQHHV-DQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSL 396
G + + D++ RC QL + FG++ L +F L
Sbjct: 94 GEDDTGRTTAEIIQDEVKDPARCEQLAQQ----------------FGITALLDRRFK-YL 136
Query: 397 SGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEAL 434
S G+ + + M+ P+ L+LDEP + LD+ + + L
Sbjct: 137 STGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQL 174
>gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 286
Score = 39.9 bits (93), Expect = 0.002
Identities = 17/32 (53%), Positives = 21/32 (65%)
Query: 396 LSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD 427
LSGGQ+ R+ AR P L+LDEPT+ LD
Sbjct: 183 LSGGQQQRLCVARTLAVEPEILLLDEPTSALD 214
>gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein;
Provisional.
Length = 272
Score = 39.6 bits (93), Expect = 0.002
Identities = 25/51 (49%), Positives = 31/51 (60%), Gaps = 4/51 (7%)
Query: 396 LSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD-IET--IEALGKAI-NKYT 442
LSGGQ+ R+ AR P L+LDEPT+ LD I T IE L + +KYT
Sbjct: 169 LSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYT 219
>gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein
(MRP). This model describes multi drug
resistance-associated protein (MRP) in eukaryotes. The
multidrug resistance-associated protein is an integral
membrane protein that causes multidrug resistance when
overexpressed in mammalian cells. It belongs to ABC
transporter superfamily. The protein topology and
function was experimentally demonstrated by epitope
tagging and immunofluorescence. Insertion of tags in the
critical regions associated with drug efflux, abrogated
its function. The C-terminal domain seem to highly
conserved [Transport and binding proteins, Other].
Length = 1522
Score = 40.3 bits (94), Expect = 0.002
Identities = 37/134 (27%), Positives = 56/134 (41%), Gaps = 20/134 (14%)
Query: 306 ICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEA 365
+ +VG G GK++LL ++ + G VH Y Q Q D L E
Sbjct: 667 VAVVGQVGCGKSSLLSALLAEMDKVEGH--VHMKGSVAYVPQQAWIQND------SLREN 718
Query: 366 AFPGKPQEE--YRRQLGGFGVSGDLALQFVG----------SLSGGQKSRVAFARMCMAA 413
GK E Y++ L + DL + G +LSGGQK RV+ AR +
Sbjct: 719 ILFGKALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSN 778
Query: 414 PNFLVLDEPTNHLD 427
+ + D+P + +D
Sbjct: 779 ADIYLFDDPLSAVD 792
Score = 33.8 bits (77), Expect = 0.20
Identities = 54/229 (23%), Positives = 87/229 (37%), Gaps = 50/229 (21%)
Query: 237 ASSVQSKIKQLERLPELKPIEKEVEVVLKFPDTELLSPPILQLSEVNF--EYVPG-KPIL 293
+S +++ I +ERL E EKE ++ PP ++ N+ Y +L
Sbjct: 1243 SSEMETNIVAVERLKEYSETEKEAPWQIQETAPPSGWPPRGRVEFRNYCLRYREDLDLVL 1302
Query: 294 TNVCLGATLESRICIVGDNGAGKTTL-----------------------------LKIIM 324
++ + ++ IVG GAGK++L L+ +
Sbjct: 1303 RHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKI 1362
Query: 325 GII--SPTAGTRTVHRNLK-FGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGG 381
II P + ++ NL F +S V + L ++ +A P K E GG
Sbjct: 1363 TIIPQDPVLFSGSLRMNLDPFSQYSDEEV-WWALELAHLKTFVSALPDKLDHECAE--GG 1419
Query: 382 FGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIET 430
+LS GQ+ V AR + LVLDE T +D+ET
Sbjct: 1420 ------------ENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLET 1456
>gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 246
Score = 39.2 bits (91), Expect = 0.002
Identities = 21/55 (38%), Positives = 30/55 (54%)
Query: 373 EEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD 427
+ +++G F D Q +LSGGQ+ R+ AR P L+LDEPT+ LD
Sbjct: 120 VDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALD 174
>gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein.
Several bacterial species have enzymes xylose isomerase
and xylulokinase enzymes for xylose utilization. Members
of this protein family are the ATP-binding cassette
(ABC) subunit of the known or predicted high-affinity
xylose ABC transporter for xylose import. These genes,
which closely resemble other sugar transport ABC
transporter genes, typically are encoded near xylose
utilization enzymes and regulatory proteins. Note that
this form of the transporter contains two copies of the
ABC transporter domain (pfam00005) [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 500
Score = 39.8 bits (93), Expect = 0.002
Identities = 15/36 (41%), Positives = 23/36 (63%)
Query: 393 VGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDI 428
+G LSGG + + A+M + P L+LDEPT +D+
Sbjct: 401 IGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDV 436
Score = 39.0 bits (91), Expect = 0.004
Identities = 43/180 (23%), Positives = 65/180 (36%), Gaps = 54/180 (30%)
Query: 293 LTNVCLGATLESRICIVGDNGAGKTTLLKIIMGI---------------------ISPT- 330
L + L + + G+NGAGK+TL+KI+ G+ I T
Sbjct: 17 LDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTE 76
Query: 331 -AGTRTVHR------------NLKFGYFSQHHVDQLD---MNLRCVQLLEAAFPGKPQEE 374
AG +H+ N+ G ++ M LR LL
Sbjct: 77 RAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLL----------- 125
Query: 375 YRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEAL 434
R+L + D + VG GGQ+ V A+ L+LDEP++ L + E L
Sbjct: 126 --REL---QLDADNVTRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEIL 180
>gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter
proteins. ABC-type Class 2 contains systems involved in
cellular processes other than transport. These families
are characterized by the fact that the ABC subunit is
made up of duplicated, fused ABC modules (ABC2). No
known transmembrane proteins or domains are associated
with these proteins.
Length = 162
Score = 38.1 bits (89), Expect = 0.002
Identities = 28/139 (20%), Positives = 42/139 (30%), Gaps = 40/139 (28%)
Query: 307 CIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEAA 366
I G NG+GK+T+L I + +K G
Sbjct: 25 IITGPNGSGKSTILDAIGLALGGAQSATRRRSGVKAGCIV-------------------- 64
Query: 367 FPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFA-RMCMAAPN---FLVLDEP 422
LSGG+K A A + +A+ +LDE
Sbjct: 65 ----AAVSAELIF------------TRLQLSGGEKELSALALILALASLKPRPLYILDEI 108
Query: 423 TNHLDIETIEALGKAINKY 441
LD +AL +AI ++
Sbjct: 109 DRGLDPRDGQALAEAILEH 127
>gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein;
Provisional.
Length = 271
Score = 39.1 bits (91), Expect = 0.003
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 395 SLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD 427
LSGGQ+ R+ AR P+ +++DEPT+ LD
Sbjct: 167 GLSGGQQQRLCIARCLAIEPDVILMDEPTSALD 199
>gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter
ATP-binding protein; Provisional.
Length = 491
Score = 39.7 bits (93), Expect = 0.003
Identities = 16/36 (44%), Positives = 23/36 (63%)
Query: 393 VGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDI 428
+GSLSGG + +V R + P L+LDEPT +D+
Sbjct: 389 IGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDV 424
Score = 38.9 bits (91), Expect = 0.004
Identities = 20/46 (43%), Positives = 27/46 (58%)
Query: 288 PGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGT 333
PG L NV L S ++G+NGAGK+TLLK + GI +G+
Sbjct: 9 PGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGS 54
>gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the
sulfonylurea receptor, subfamily C. The SUR domain 1.
The sulfonylurea receptor SUR is an ATP transporter of
the ABCC/MRP family with tandem ATPase binding domains.
Unlike other ABC proteins, it has no intrinsic transport
function, neither active nor passive, but associates
with the potassium channel proteins Kir6.1 or Kir6.2 to
form the ATP-sensitive potassium (K(ATP)) channel.
Within the channel complex, SUR serves as a regulatory
subunit that fine-tunes the gating of Kir6.x in response
to alterations in cellular metabolism. It constitutes a
major pharmaceutical target as it binds numerous drugs,
K(ATP) channel openers and blockers, capable of up- or
down-regulating channel activity.
Length = 218
Score = 38.9 bits (90), Expect = 0.003
Identities = 44/169 (26%), Positives = 64/169 (37%), Gaps = 27/169 (15%)
Query: 284 FEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFG 343
F + G L+N+ + IVG G GK++LL I+G + G VH + K
Sbjct: 8 FSWGSGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGK--VHWSNKNE 65
Query: 344 YFSQHHVDQLDMNLRCVQ-------LLEAAFP-----GKP--QEEYRRQLGGFGVSGDLA 389
N V LL A G P ++ Y+ + D+
Sbjct: 66 S-EPSFEATRSRNRYSVAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSLQPDID 124
Query: 390 LQFVG----------SLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDI 428
L G +LSGGQ+ R+ AR N + LD+P + LDI
Sbjct: 125 LLPFGDQTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDI 173
>gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 253
Score = 39.1 bits (92), Expect = 0.003
Identities = 23/55 (41%), Positives = 28/55 (50%), Gaps = 10/55 (18%)
Query: 395 SLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDI-------ETIEALGKAINKYT 442
LSGGQ+ R+ AR P L++DEPT+ LD E I L K KYT
Sbjct: 149 GLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKK---KYT 200
>gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 265
Score = 38.8 bits (90), Expect = 0.003
Identities = 20/42 (47%), Positives = 25/42 (59%), Gaps = 4/42 (9%)
Query: 386 GDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD 427
GDLA +LSGGQ+ R+ AR P L+ DEPT+ LD
Sbjct: 156 GDLAF----NLSGGQQQRLCIARALATDPEILLFDEPTSALD 193
>gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding
subunit; Provisional.
Length = 400
Score = 39.2 bits (91), Expect = 0.003
Identities = 41/147 (27%), Positives = 64/147 (43%), Gaps = 36/147 (24%)
Query: 308 IVGDNGAGKTTLLKIIMGIISPTAGT----------------RTVHRN---LKFGYFS-Q 347
I+G +G+GK+T+++++ +I PT G R V R + F F+
Sbjct: 59 IMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALM 118
Query: 348 HHVDQLDMNLRCVQLLEAAFPGKPQEEYR-------RQLGGFGVSGDLALQFVGSLSGGQ 400
H+ LD ++L G EE R RQ+G + A + LSGG
Sbjct: 119 PHMTVLDNTAFGMEL-----AGINAEERREKALDALRQVG----LENYAHSYPDELSGGM 169
Query: 401 KSRVAFARMCMAAPNFLVLDEPTNHLD 427
+ RV AR P+ L++DE + LD
Sbjct: 170 RQRVGLARALAINPDILLMDEAFSALD 196
>gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 38.8 bits (90), Expect = 0.004
Identities = 17/39 (43%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 395 SLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD-IETIE 432
LSGGQ+ R+ AR P+ +++DEPT+ LD I T++
Sbjct: 147 KLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLK 185
>gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein;
Provisional.
Length = 267
Score = 38.5 bits (90), Expect = 0.004
Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 4/52 (7%)
Query: 395 SLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD-IETI---EALGKAINKYT 442
+LSGGQ+ R+ AR P+ L++DEP + LD I T+ E + + YT
Sbjct: 163 TLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYT 214
>gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 268
Score = 38.4 bits (89), Expect = 0.005
Identities = 17/33 (51%), Positives = 21/33 (63%)
Query: 395 SLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD 427
SLSGGQ+ R+ AR P L+LDEP + LD
Sbjct: 164 SLSGGQQQRLCIARTLAMKPAVLLLDEPASALD 196
>gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 38.5 bits (89), Expect = 0.005
Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
Query: 395 SLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD----IETIEALGKAINKYTF 443
+ SGGQ+ R+ AR P ++LDEPT+ LD E E L + ++YTF
Sbjct: 147 AFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTF 199
>gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport
system, ATPase component [Amino acid transport and
metabolism / Inorganic ion transport and metabolism].
Length = 316
Score = 38.7 bits (91), Expect = 0.005
Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 396 LSGGQKSRVAFARMCMAA-PNFLVLDEPTNHLDIET 430
LSGG + RV A M +A P L+ DEPT LD+
Sbjct: 154 LSGGMRQRVMIA-MALALNPKLLIADEPTTALDVTV 188
Score = 34.1 bits (79), Expect = 0.13
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 305 RICIVGDNGAGKTTLLKIIMGIISPTAGTRT 335
+ IVG++G+GK+ L K IMG++
Sbjct: 33 ILGIVGESGSGKSVLAKAIMGLLPKPNARIV 63
>gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein;
Provisional.
Length = 258
Score = 38.2 bits (89), Expect = 0.005
Identities = 23/53 (43%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
Query: 394 GSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD-IET--IEAL-GKAINKYT 442
G LSGGQ+ R+ AR P+ L++DEP + LD I T IE L + YT
Sbjct: 147 GGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYT 199
>gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 261
Score = 38.1 bits (88), Expect = 0.005
Identities = 17/33 (51%), Positives = 21/33 (63%)
Query: 395 SLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD 427
SLSGGQ+ R+ AR P L+LDEP + LD
Sbjct: 149 SLSGGQQQRLCIARAIATEPEVLLLDEPCSALD 181
>gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family
protein. [Transport and binding proteins, Other].
Length = 1394
Score = 38.9 bits (91), Expect = 0.005
Identities = 45/161 (27%), Positives = 72/161 (44%), Gaps = 35/161 (21%)
Query: 308 IVGDNGAGKTTLL-----KIIMGIISPTAGTRTVH---RNLKF----GYFSQHHVDQLDM 355
++G +GAGKTTLL ++ G+I T G R V+ + F GY V Q D+
Sbjct: 794 LMGASGAGKTTLLNVLAERVTTGVI--TGGDRLVNGRPLDSSFQRSIGY-----VQQQDL 846
Query: 356 NLRCVQLLEA----AFPGKPQE----------EYRRQLGGFGVSGDLALQFVGS-LSGGQ 400
+L + E+ A+ +P+ E +L D + G L+ Q
Sbjct: 847 HLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQ 906
Query: 401 KSRVAFARMCMAAPNFLV-LDEPTNHLDIETIEALGKAINK 440
+ R+ +A P L+ LDEPT+ LD +T ++ K + K
Sbjct: 907 RKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRK 947
Score = 34.3 bits (79), Expect = 0.14
Identities = 13/39 (33%), Positives = 18/39 (46%)
Query: 392 FVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIET 430
FV +SGG++ RV+ A + D T LD T
Sbjct: 206 FVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSAT 244
>gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein
YrbF; Provisional.
Length = 269
Score = 37.8 bits (88), Expect = 0.006
Identities = 47/175 (26%), Positives = 69/175 (39%), Gaps = 30/175 (17%)
Query: 290 KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAG--------------TRT 335
+ I N+ L I+G +G GKTTLL++I G I+P G +R
Sbjct: 20 RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRL 79
Query: 336 VHRNLKFGYFSQHHVDQLDMNLRCVQLLEAAFPGK-----PQEEYRR----QLGGFGVSG 386
+ Q DMN+ A+P + P +L G+ G
Sbjct: 80 YTVRKRMSMLFQSGALFTDMNV----FDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRG 135
Query: 387 DLALQFVGS-LSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINK 440
A + + S LSGG R A AR P+ ++ DEP D T+ L K I++
Sbjct: 136 --AAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISE 188
>gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 249
Score = 37.9 bits (88), Expect = 0.006
Identities = 21/49 (42%), Positives = 30/49 (61%), Gaps = 3/49 (6%)
Query: 395 SLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD-IET--IEALGKAINK 440
LSGGQ+ R+ AR P+ +++DEPT+ LD I T IE L + + K
Sbjct: 145 GLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK 193
>gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 259
Score = 37.7 bits (87), Expect = 0.007
Identities = 43/179 (24%), Positives = 71/179 (39%), Gaps = 28/179 (15%)
Query: 275 PILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTR 334
P +++ +++F Y K I + + I+G +G GK+T +K + IS G
Sbjct: 6 PAIKVKDLSFYYNTSKAI-EGISMDIYRNKVTAIIGPSGCGKSTFIKT-LNRISELEGPV 63
Query: 335 TVHRNLKFG----YFSQHHVDQLDMNLRCVQLLEAAFPGKPQEE--YRRQLGGFGVSGDL 388
V + F Y + ++++L + V FP E Y ++ DL
Sbjct: 64 KVEGVVDFFGQNIYDPRININRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADL 123
Query: 389 ------ALQFVG--------------SLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD 427
AL+ LSGGQ+ R+ AR P L++DEP + LD
Sbjct: 124 DEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALD 182
>gnl|CDD|100796 PRK01156, PRK01156, chromosome segregation protein; Provisional.
Length = 895
Score = 38.3 bits (89), Expect = 0.007
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 6/43 (13%)
Query: 391 QFVGSLSGGQKS------RVAFARMCMAAPNFLVLDEPTNHLD 427
+ + SLSGG+K+ RVA A+ + L++DEPT LD
Sbjct: 797 EGIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLD 839
>gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 258
Score = 37.7 bits (87), Expect = 0.008
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 395 SLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD 427
SLSGGQ+ R+ AR P ++ DEPT+ LD
Sbjct: 154 SLSGGQQQRLCIARTLAVKPKIILFDEPTSALD 186
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication,
recombination, and repair].
Length = 908
Score = 38.2 bits (89), Expect = 0.010
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 8/56 (14%)
Query: 393 VGSLSGGQKSRVAFA-RMCMA-------APNFLVLDEPTNHLDIETIEALGKAINK 440
+ +LSGG++ + A R+ ++ L LDEP LD E +E L + + +
Sbjct: 813 IKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEE 868
Score = 32.4 bits (74), Expect = 0.54
Identities = 9/14 (64%), Positives = 12/14 (85%)
Query: 307 CIVGDNGAGKTTLL 320
IVG NGAGK+++L
Sbjct: 29 LIVGPNGAGKSSIL 42
>gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 285
Score = 37.5 bits (87), Expect = 0.011
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 396 LSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD 427
LSGGQ+ R+ AR P +++DEP + LD
Sbjct: 181 LSGGQQQRLCIARAIAPDPEVILMDEPASALD 212
>gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 36.9 bits (85), Expect = 0.012
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
Query: 396 LSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD-IETIEA---LGKAINKYT 442
LSGGQ+ R+ AR +P +++DEP + LD I T + + K YT
Sbjct: 147 LSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYT 197
>gnl|CDD|133353 cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8) GTPases.
Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like
Arl4 and Arl7, are localized to the nucleus and
nucleolus. Arl5 is developmentally regulated during
embryogenesis in mice. Human Arl5 interacts with the
heterochromatin protein 1-alpha (HP1alpha), a nonhistone
chromosomal protein that is associated with
heterochromatin and telomeres, and prevents telomere
fusion. Arl5 may also play a role in embryonic nuclear
dynamics and/or signaling cascades. Arl8 was identified
from a fetal cartilage cDNA library. It is found in
brain, heart, lung, cartilage, and kidney. No function
has been assigned for Arl8 to date.
Length = 174
Score = 36.2 bits (84), Expect = 0.012
Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 7/53 (13%)
Query: 298 LGATLESRICIVGDNGAGKTTLL-KIIMGII---SPTAGTRT---VHRNLKFG 343
E ++ IVG + AGKTT+L + ++G + SPT G+ V++N++F
Sbjct: 10 FFPRKEYKVIIVGLDNAGKTTILYQFLLGEVVHTSPTIGSNVEEIVYKNIRFL 62
>gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 253
Score = 36.7 bits (85), Expect = 0.013
Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Query: 395 SLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD-IET--IEALGKAINKY 441
SLSGGQ+ R+ AR P +++DEP + LD I T IE L + + K
Sbjct: 149 SLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKE 198
>gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision
repair protein UvrA. Nucleotide excision repair in
eubacteria is a process that repairs DNA damage by the
removal of a 12-13-mer oligonucleotide containing the
lesion. Recognition and cleavage of the damaged DNA is a
multistep ATP-dependent reaction that requires the UvrA,
UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases,
with UvrA having two ATP binding sites, which have the
characteristic signature of the family of ABC proteins,
and UvrB having one ATP binding site that is
structurally related to that of helicases.
Length = 176
Score = 36.1 bits (84), Expect = 0.013
Identities = 37/155 (23%), Positives = 58/155 (37%), Gaps = 38/155 (24%)
Query: 293 LTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQ 352
L N+ + L + + G +G+GK+TL+ + + R + KF +DQ
Sbjct: 11 LQNLDVSIPLNVLVVVTGVSGSGKSTLVN---EGLYASGKARLISFLPKFSRNKLIFIDQ 67
Query: 353 L----DMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLAL-QFVGSLSGGQKSRVAFA 407
L D+ L G L L Q + +LSGG+ RV A
Sbjct: 68 LQFLIDVGL----------------------------GYLTLGQKLSTLSGGELQRVKLA 99
Query: 408 RMCMAAP--NFLVLDEPTNHLDIETIEALGKAINK 440
+ P +LDEP+ L + I L + I
Sbjct: 100 SELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKG 134
>gnl|CDD|206720 cd04154, Arl2, Arf-like 2 (Arl2) GTPase. Arl2 (Arf-like 2) GTPases
are members of the Arf family that bind GDP and GTP with
very low affinity. Unlike most Arf family proteins, Arl2
is not myristoylated at its N-terminal helix. The
protein PDE-delta, first identified in photoreceptor rod
cells, binds specifically to Arl2 and is structurally
very similar to RhoGDI. Despite the high structural
similarity between Arl2 and Rho proteins and between
PDE-delta and RhoGDI, the interactions between the
GTPases and their effectors are very different. In its
GTP bound form, Arl2 interacts with the protein Binder
of Arl2 (BART), and the complex is believed to play a
role in mitochondrial adenine nucleotide transport. In
its GDP bound form, Arl2 interacts with tubulin- folding
Cofactor D; this interaction is believed to play a role
in regulation of microtubule dynamics that impact the
cytoskeleton, cell division, and cytokinesis.
Length = 173
Score = 36.1 bits (84), Expect = 0.013
Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 6/43 (13%)
Query: 303 ESRICIVGDNGAGKTTLLKIIMG----IISPTAG--TRTVHRN 339
E RI ++G + AGKTT+LK G ISPT G +T+ N
Sbjct: 14 EMRILMLGLDNAGKTTILKKFNGEDISTISPTLGFNIKTLEYN 56
>gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 329
Score = 37.0 bits (85), Expect = 0.014
Identities = 16/33 (48%), Positives = 22/33 (66%)
Query: 395 SLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD 427
+LSGGQ+ R+ AR P L++DEPT+ LD
Sbjct: 225 ALSGGQQQRLCIARAIALEPEVLLMDEPTSALD 257
>gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein;
Provisional.
Length = 264
Score = 36.7 bits (85), Expect = 0.015
Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 4/52 (7%)
Query: 395 SLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD-IET--IEALGKAI-NKYT 442
SLSGGQ+ R+ AR P +++DEP + LD I T IE L + +YT
Sbjct: 151 SLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYT 202
>gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 269
Score = 36.7 bits (85), Expect = 0.015
Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 395 SLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD-IETIE 432
SLSGGQ+ R+ AR P +++DEP + LD I T++
Sbjct: 154 SLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLK 192
>gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein;
Provisional.
Length = 267
Score = 36.6 bits (85), Expect = 0.016
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 395 SLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD-IET--IEAL 434
LSGGQ+ R+ AR +P +++DEP + LD I T +E L
Sbjct: 163 GLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEEL 205
>gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 261
Score = 36.6 bits (84), Expect = 0.016
Identities = 15/32 (46%), Positives = 19/32 (59%)
Query: 396 LSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD 427
LSGGQ+ R+ AR P L++DEP LD
Sbjct: 151 LSGGQQQRLCIARALAVKPKVLLMDEPCFGLD 182
>gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and
permease components [Secondary metabolites biosynthesis,
transport, and catabolism / Inorganic ion transport and
metabolism].
Length = 546
Score = 37.1 bits (86), Expect = 0.017
Identities = 36/137 (26%), Positives = 54/137 (39%), Gaps = 39/137 (28%)
Query: 308 IVGDNGAGKTTLLKIIMGIISPTAG------------TRTVHRNLKFGYFSQHHV-DQLD 354
++G NG+GK+TL ++ G+ P +G +R L FS +H+ DQL
Sbjct: 354 LIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQL- 412
Query: 355 MNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGS----------LSGGQKSRV 404
+ A P ++ +R L L S LS GQK R+
Sbjct: 413 -----LGPEGKASPQLIEKWLQR----------LELAHKTSLNDGRFSNLKLSTGQKKRL 457
Query: 405 AFARMCMAAPNFLVLDE 421
A + + LVLDE
Sbjct: 458 ALLLALLEERDILVLDE 474
>gnl|CDD|200938 pfam00025, Arf, ADP-ribosylation factor family. Pfam combines a
number of different Prosite families together.
Length = 174
Score = 35.7 bits (83), Expect = 0.020
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 7/47 (14%)
Query: 303 ESRICIVGDNGAGKTTLLKIIMG----IISPTAG--TRTV-HRNLKF 342
E RI I+G + AGKTT+L + PT G TV ++N+KF
Sbjct: 14 EMRILILGLDNAGKTTILYKLKLGEIVTTIPTIGFNVETVTYKNVKF 60
>gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 274
Score = 36.5 bits (84), Expect = 0.021
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 395 SLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD 427
+LSGGQ+ R+ AR P+ L++DEP + LD
Sbjct: 161 ALSGGQQQRLCIARAIAMKPDVLLMDEPCSALD 193
>gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 36.0 bits (83), Expect = 0.023
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 396 LSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD 427
LSGGQ+ R+ AR P L++DEP + LD
Sbjct: 150 LSGGQQQRLCIARAIAVKPTMLLMDEPCSALD 181
>gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein;
Provisional.
Length = 253
Score = 35.9 bits (83), Expect = 0.024
Identities = 20/42 (47%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
Query: 396 LSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD-IET--IEAL 434
LSGGQ+ R+ AR P L++DEP + LD I T IE L
Sbjct: 150 LSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEEL 191
>gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding
protein. Members of this protein family are the
ATP-binding subunit of a three-protein transporter. This
family belongs, more broadly, to the family of proline
and glycine-betaine transporters, but members have been
identified by direct characterization and by
bioinformatic means as choline transporters. Many
species have several closely-related members of this
family, probably with variable abilities to act
additionally on related quaternary amines [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 382
Score = 36.3 bits (84), Expect = 0.026
Identities = 43/159 (27%), Positives = 67/159 (42%), Gaps = 30/159 (18%)
Query: 297 CLGATL---ESRICIV-GDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQ 352
A+L E IC++ G +G+GK+TLL+ + G+ + G+ V +
Sbjct: 40 VHNASLDIEEGEICVLMGLSGSGKSTLLRAVNGLNPVSRGSVLVKDGDGSVDVANCDAAT 99
Query: 353 L-DMNLRCVQLLEAAF------------------PGKPQEEYRR----QLGGFGVSGDLA 389
L + V ++ F G P+ E R+ QL G++ A
Sbjct: 100 LRRLRTHRVSMVFQQFALLPWRTVEENVAFGLEMQGMPKAERRKRVDEQLELVGLA-QWA 158
Query: 390 LQFVGSLSGGQKSRVAFAR-MCMAAPNFLVLDEPTNHLD 427
+ G LSGG + RV AR AP L++DEP + LD
Sbjct: 159 DRKPGELSGGMQQRVGLARAFATEAP-ILLMDEPFSALD 196
>gnl|CDD|218745 pfam05783, DLIC, Dynein light intermediate chain (DLIC). This
family consists of several eukaryotic dynein light
intermediate chain proteins. The light intermediate
chains (LICs) of cytoplasmic dynein consist of multiple
isoforms, which undergo post-translational modification
to produce a large number of species. DLIC1 is known to
be involved in assembly, organisation, and function of
centrosomes and mitotic spindles when bound to
pericentrin. DLIC2 is a subunit of cytoplasmic dynein 2
that may play a role in maintaining Golgi organisation
by binding cytoplasmic dynein 2 to its Golgi-associated
cargo.
Length = 490
Score = 36.4 bits (84), Expect = 0.026
Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 6/54 (11%)
Query: 306 ICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRC 359
+ ++G++G+GKTTL+ + G+ P G R L++ Y + H D+ D RC
Sbjct: 48 VLVLGEDGSGKTTLIAKLQGVEHPKKG-----RGLEYLYLNVHDEDRDDQT-RC 95
>gnl|CDD|129694 TIGR00606, rad50, rad50. All proteins in this family for which
functions are known are involvedin recombination,
recombinational repair, and/or non-homologous end
joining.They are components of an exonuclease complex
with MRE11 homologs. This family is distantly related to
the SbcC family of bacterial proteins.This family is
based on the phylogenomic analysis of JA Eisen (1999,
Ph.D. Thesis, Stanford University).
Length = 1311
Score = 36.6 bits (84), Expect = 0.029
Identities = 24/60 (40%), Positives = 29/60 (48%), Gaps = 6/60 (10%)
Query: 385 SGDLALQFVGSLSGGQKS------RVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAI 438
GD AL G S GQK R+A A + LDEPT +LD E IE+L A+
Sbjct: 1189 KGDTALDMRGRCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHAL 1248
>gnl|CDD|222036 pfam13304, AAA_21, AAA domain.
Length = 256
Score = 35.9 bits (82), Expect = 0.029
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 307 CIVGDNGAGKTTLLKIIMGIIS 328
I+G NG+GK+ LLK + ++
Sbjct: 3 VIIGPNGSGKSNLLKALALLLL 24
Score = 35.5 bits (81), Expect = 0.042
Identities = 13/59 (22%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
Query: 387 DLALQFVGSLSGGQKSRVAFARMCMAAPN---FLVLDEPTNHLDIETIEALGKAINKYT 442
L + +S G K +A ++A L++DEP N L + + L + + + +
Sbjct: 181 RLLKLLIKGISDGTKRLLALLLALLSALPKGSLLLIDEPENGLHPKLLRKLVELLKELS 239
>gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit;
Provisional.
Length = 326
Score = 35.9 bits (83), Expect = 0.036
Identities = 18/38 (47%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 396 LSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEA 433
LSGG RV A P L+ DEPT LD+ TI+A
Sbjct: 154 LSGGMSQRVMIAMAIACRPKLLIADEPTTALDV-TIQA 190
>gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 35.4 bits (81), Expect = 0.040
Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 3/50 (6%)
Query: 395 SLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD-IET--IEALGKAINKY 441
+LSGGQ+ R+ AR+ P +++DEP + LD + T IE L + + +
Sbjct: 147 ALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQN 196
>gnl|CDD|217424 pfam03205, MobB, Molybdopterin guanine dinucleotide synthesis
protein B. This protein contains a P-loop.
Length = 126
Score = 33.9 bits (78), Expect = 0.040
Identities = 9/50 (18%), Positives = 19/50 (38%), Gaps = 8/50 (16%)
Query: 305 RICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLD 354
+ +VG +GKTTL++ ++ + R + Q +
Sbjct: 2 IVLVVGPKDSGKTTLIRKLLNYL--------KRRGYRVAVVKHLDHGQGE 43
>gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 35.4 bits (81), Expect = 0.041
Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 4/51 (7%)
Query: 396 LSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD-IETI---EALGKAINKYT 442
LSGGQ+ R+ AR P +++DEP + LD I T+ E + + KYT
Sbjct: 149 LSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYT 199
>gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 305
Score = 34.8 bits (80), Expect = 0.062
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Query: 386 GDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD 427
D AL LSGGQ+ R+ AR P +++DEP + LD
Sbjct: 195 DDNAL----GLSGGQQQRLCIARCLAVDPEVILMDEPASALD 232
>gnl|CDD|222219 pfam13558, SbcCD_C, Putative exonuclease SbcCD, C subunit.
Possible exonuclease SbcCD, C subunit, on AAA proteins.
Length = 79
Score = 32.2 bits (74), Expect = 0.082
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 12/60 (20%)
Query: 393 VGSLSGGQKSRVAFARMCMA------------APNFLVLDEPTNHLDIETIEALGKAINK 440
G+LSGG+K +A+ + A AP + LDE LD E I +L + + +
Sbjct: 20 SGTLSGGEKQVLAYLALAAALAAQYGSNRGGPAPRLIFLDEAFAKLDEENIRSLLELLRE 79
>gnl|CDD|222160 pfam13476, AAA_23, AAA domain.
Length = 204
Score = 34.1 bits (78), Expect = 0.085
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 306 ICIVGDNGAGKTTLLKIIM 324
I G NG+GKTT+L I
Sbjct: 22 TLIYGPNGSGKTTILDAIR 40
>gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein;
Provisional.
Length = 623
Score = 34.8 bits (80), Expect = 0.086
Identities = 18/38 (47%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 396 LSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEA 433
LSGG + RV A P L+ DEPT LD+ TI+A
Sbjct: 169 LSGGMRQRVMIAMALSCRPAVLIADEPTTALDV-TIQA 205
Score = 29.8 bits (67), Expect = 3.0
Identities = 14/46 (30%), Positives = 24/46 (52%)
Query: 383 GVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDI 428
G+ + A ++ SGGQ+ R+ AR P ++ DE + LD+
Sbjct: 451 GLLPEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDV 496
>gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component;
Provisional.
Length = 330
Score = 34.7 bits (80), Expect = 0.092
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 397 SGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEA 433
SGG + RV A + P L+ DEPT LD+ T++A
Sbjct: 163 SGGMRQRVMIAMALLCRPKLLIADEPTTALDV-TVQA 198
>gnl|CDD|238550 cd01130, VirB11-like_ATPase, Type IV secretory pathway component
VirB11, and related ATPases. The homohexamer, VirB11 is
one of eleven Vir proteins, which are required for
T-pilus biogenesis and virulence in the transfer of
T-DNA from the Ti (tumor-inducing) plasmid of bacterial
to plant cells. The pilus is a fibrous cell surface
organelle, which mediates adhesion between bacteria
during conjugative transfer or between bacteria and host
eukaryotic cells during infection. VirB11- related
ATPases include the archaeal flagella biosynthesis
protein and the pilus assembly proteins CpaF/TadA and
TrbB. This alignment contains the C-terminal domain,
which is the ATPase.
Length = 186
Score = 33.8 bits (78), Expect = 0.10
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 306 ICIVGDNGAGKTTLLKIIMGIISPT 330
I I G G+GKTTLL ++ I P
Sbjct: 28 ILISGGTGSGKTTLLNALLAFIPPD 52
>gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General
function prediction only].
Length = 219
Score = 33.8 bits (77), Expect = 0.11
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 5/42 (11%)
Query: 303 ESRICIVGDNGAGKTTLLKIIMG-----IISPTAGTRTVHRN 339
E +I ++GD G GKTTLL ++G PT G +
Sbjct: 5 EFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKT 46
>gnl|CDD|223873 COG0802, COG0802, Predicted ATPase or kinase [General function
prediction only].
Length = 149
Score = 33.0 bits (76), Expect = 0.11
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 7/32 (21%)
Query: 306 ICIVGDNGAGKTTLLK-IIMG------IISPT 330
+ + GD GAGKTTL++ I G + SPT
Sbjct: 28 VLLSGDLGAGKTTLVRGIAKGLGVDGNVKSPT 59
>gnl|CDD|216999 pfam02367, UPF0079, Uncharacterized P-loop hydrolase UPF0079. This
uncharacterized family contains a P-loop.
Length = 123
Score = 32.2 bits (74), Expect = 0.14
Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 10/53 (18%)
Query: 306 ICIVGDNGAGKTTLLK-IIMG------IISPTAGTRTVHRNLKFGYFSQHHVD 351
+ + GD GAGKTT ++ + G + SPT V+ G +H D
Sbjct: 18 VLLSGDLGAGKTTFVRGLAQGLGITGNVTSPTFTLVNVYN---PGGLPLYHYD 67
>gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter
membrane\ATP-binding components; Provisional.
Length = 569
Score = 33.9 bits (78), Expect = 0.16
Identities = 52/229 (22%), Positives = 79/229 (34%), Gaps = 58/229 (25%)
Query: 236 RASSVQSKIKQLERLPELKPIEKEVEVVLKFPDTELLSPPILQLSEVNFEYVPG--KPIL 293
R S+ S+I+ + L E ++ E V + L ++ F Y P P L
Sbjct: 282 RGSAAYSRIRAM--LAEAPVVKDGSEPVPEGRGE-------LDVNIRQFTY-PQTDHPAL 331
Query: 294 TNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQL 353
NV + I G G+GK+TLL +I + G H ++ +D
Sbjct: 332 ENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDI----PLTKLQLDSW 387
Query: 354 DMNLRCVQLLEAAF------------PGKPQEE--------------------YRRQLGG 381
L V F P Q+E Y ++G
Sbjct: 388 RSRLAVVSQTPFLFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGE 447
Query: 382 FGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIET 430
GV LSGGQK R++ AR + L+LD+ + +D T
Sbjct: 448 RGVM----------LSGGQKQRISIARALLLNAEILILDDALSAVDGRT 486
>gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD.
This family represents the NikD subunit of a
multisubunit nickel import ABC transporter complex.
Nickel, once imported, may be used in urease and in
certain classes of hydrogenase and superoxide dismutase.
NikD and NikE are homologous [Transport and binding
proteins, Cations and iron carrying compounds].
Length = 230
Score = 33.5 bits (77), Expect = 0.17
Identities = 16/33 (48%), Positives = 19/33 (57%)
Query: 396 LSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDI 428
LSGG RV A + P FL+ DEPT LD+
Sbjct: 126 LSGGMLQRVMIALALLLEPPFLIADEPTTDLDV 158
>gnl|CDD|206718 cd04151, Arl1, ADP ribosylation factor 1 (Arf1). Arl1 subfamily.
Arl1 (Arf-like 1) localizes to the Golgi complex, where
it is believed to recruit effector proteins to the
trans-Golgi network. Like most members of the Arf
family, Arl1 is myristoylated at its N-terminal helix
and mutation of the myristoylation site disrupts Golgi
targeting. In humans, the Golgi-localized proteins
golgin-97 and golgin-245 have been identified as Arl1
effectors. Golgins are large coiled-coil proteins found
in the Golgi, and these golgins contain a C-terminal
GRIP domain, which is the site of Arl1 binding.
Additional Arl1 effectors include the GARP
(Golgi-associated retrograde protein)/VFT (Vps53)
vesicle-tethering complex and Arfaptin 2. Arl1 is not
required for exocytosis, but appears necessary for
trafficking from the endosomes to the Golgi. In
Drosophila zygotes, mutation of Arl1 is lethal, and in
the host-bloodstream form of Trypanosoma brucei, Arl1 is
essential for viability.
Length = 158
Score = 32.8 bits (75), Expect = 0.17
Identities = 21/45 (46%), Positives = 32/45 (71%), Gaps = 7/45 (15%)
Query: 305 RICIVGDNGAGKTTLL-KIIMG-IIS--PTAG--TRTV-HRNLKF 342
RI I+G +GAGKTT+L ++ +G +++ PT G TV ++NLKF
Sbjct: 1 RILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKF 45
>gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated.
Length = 252
Score = 33.1 bits (76), Expect = 0.19
Identities = 15/44 (34%), Positives = 25/44 (56%)
Query: 397 SGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINK 440
SGG+K R +M + +LDE + LDI+ ++ + + INK
Sbjct: 153 SGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINK 196
Score = 30.8 bits (70), Expect = 1.4
Identities = 11/18 (61%), Positives = 15/18 (83%)
Query: 308 IVGDNGAGKTTLLKIIMG 325
I+G NG+GK+TL K+I G
Sbjct: 38 IMGPNGSGKSTLSKVIAG 55
>gnl|CDD|215651 pfam00006, ATP-synt_ab, ATP synthase alpha/beta family,
nucleotide-binding domain. This family includes the ATP
synthase alpha and beta subunits, the ATP synthase
associated with flagella and the termination factor Rho.
Length = 213
Score = 33.2 bits (77), Expect = 0.20
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 305 RICIVGDNGAGKTTLLKIIM 324
RI I G +G GKT LL +I
Sbjct: 17 RIGIFGGSGTGKTVLLGMIA 36
>gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding
protein OppF; Provisional.
Length = 331
Score = 33.1 bits (76), Expect = 0.23
Identities = 34/156 (21%), Positives = 63/156 (40%), Gaps = 39/156 (25%)
Query: 308 IVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCV----QL- 362
+VG++G GK+T + I+G++ T G + + + D R V Q+
Sbjct: 52 VVGESGCGKSTFARAIIGLVKATDGEVA--------WLGKDLLGMKDDEWRAVRSDIQMI 103
Query: 363 ---------------------LEAAFPGKPQEEYRRQLGGF----GVSGDLALQFVGSLS 397
L P ++E + ++ G+ +L ++ S
Sbjct: 104 FQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFS 163
Query: 398 GGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEA 433
GGQ R+ AR + P ++ DEP + LD+ +I+A
Sbjct: 164 GGQCQRIGIARALILEPKLIICDEPVSALDV-SIQA 198
>gnl|CDD|218719 pfam05729, NACHT, NACHT domain. This NTPase domain is found in
apoptosis proteins as well as those involved in MHC
transcription activation. This family is closely related
to pfam00931.
Length = 165
Score = 32.3 bits (74), Expect = 0.27
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 304 SRICIVGDNGAGKTTLLKIIM 324
+ + G+ G+GKTTLL+ I
Sbjct: 1 RTVILQGEAGSGKTTLLQKIA 21
>gnl|CDD|226459 COG3950, COG3950, Predicted ATP-binding protein involved in
virulence [General function prediction only].
Length = 440
Score = 33.4 bits (76), Expect = 0.27
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 306 ICIVGDNGAGKTTLLKIIMGIISP 329
IVG NG+GKTT+L I ++
Sbjct: 27 TIIVGPNGSGKTTVLDAIRNALNK 50
>gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed.
Length = 248
Score = 32.8 bits (75), Expect = 0.28
Identities = 14/43 (32%), Positives = 24/43 (55%)
Query: 397 SGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAIN 439
SGG+K R +M + P +LDE + LDI+ ++ + +N
Sbjct: 147 SGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVN 189
>gnl|CDD|206682 cd01895, EngA2, EngA2 GTPase contains the second domain of EngA.
This EngA2 subfamily CD represents the second GTPase
domain of EngA and its orthologs, which are composed of
two adjacent GTPase domains. Since the sequences of the
two domains are more similar to each other than to other
GTPases, it is likely that an ancient gene duplication,
rather than a fusion of evolutionarily distinct GTPases,
gave rise to this family. Although the exact function of
these proteins has not been elucidated, studies have
revealed that the E. coli EngA homolog, Der, and
Neisseria gonorrhoeae EngA are essential for cell
viability. A recent report suggests that E. coli Der
functions in ribosome assembly and stability.
Length = 174
Score = 32.0 bits (74), Expect = 0.30
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 4/33 (12%)
Query: 305 RICIVGDNGAGKTTLLKIIMG----IISPTAGT 333
+I I+G GK++LL ++G I+S AGT
Sbjct: 4 KIAIIGRPNVGKSSLLNALLGEERVIVSDIAGT 36
>gnl|CDD|213239 cd03272, ABC_SMC3_euk, ATP-binding cassette domain of eukaryotic
SMC3 proteins. The structural maintenance of
chromosomes (SMC) proteins are large (approximately 110
to 170 kDa), and each is arranged into five recognizable
domains. Amino-acid sequence homology of SMC proteins
between species is largely confined to the amino- and
carboxy-terminal globular domains. The amino-terminal
domain contains a 'Walker A' nucleotide-binding domain
(GxxGxGKS/T, in the single-letter amino-acid code),
which by mutational studies has been shown to be
essential in several proteins. The carboxy-terminal
domain contains a sequence (the DA-box) that resembles a
'Walker B' motif, and a motif with homology to the
signature sequence of the ATP-binding cassette (ABC)
family of ATPases. The sequence homology within the
carboxy-terminal domain is relatively high within the
SMC1-SMC4 group, whereas SMC5 and SMC6 show some
divergence in both of these sequences. In eukaryotic
cells, the proteins are found as heterodimers of SMC1
paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6
(formerly known as Rad18).
Length = 243
Score = 32.2 bits (74), Expect = 0.44
Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 6/50 (12%)
Query: 396 LSGGQKSRVAFA-----RMCMAAPNFLVLDEPTNHLDIETIEALGKAINK 440
LSGGQKS VA A + C AP F + DE LD + A+ I +
Sbjct: 159 LSGGQKSLVALALIFAIQKCDPAP-FYLFDEIDAALDAQYRTAVANMIKE 207
>gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding
subunit; Provisional.
Length = 356
Score = 32.5 bits (75), Expect = 0.45
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 396 LSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD 427
LSGGQ+ RVA R + P + DEP ++LD
Sbjct: 135 LSGGQRQRVAMGRAIVREPAVFLFDEPLSNLD 166
Score = 31.0 bits (71), Expect = 1.4
Identities = 12/28 (42%), Positives = 20/28 (71%)
Query: 306 ICIVGDNGAGKTTLLKIIMGIISPTAGT 333
I +VG +G GK+TLL+++ G+ T+G
Sbjct: 33 IVLVGPSGCGKSTLLRMVAGLERITSGE 60
>gnl|CDD|238071 cd00124, MYSc, Myosin motor domain. This catalytic (head) domain
has ATPase activity and belongs to the larger group of
P-loop NTPases. Myosins are actin-dependent molecular
motors that play important roles in muscle contraction,
cell motility, and organelle transport. The head domain
is a molecular motor, which utilizes ATP hydrolysis to
generate directed movement toward the plus end along
actin filaments. A cyclical interaction between myosin
and actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 679
Score = 32.6 bits (75), Expect = 0.47
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 306 ICIVGDNGAGKTTLLKIIM 324
I I G++GAGKT K+IM
Sbjct: 89 IIISGESGAGKTENTKLIM 107
>gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD;
Provisional.
Length = 254
Score = 32.0 bits (73), Expect = 0.52
Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 4/34 (11%)
Query: 396 LSGG--QKSRVAFARMCMAAPNFLVLDEPTNHLD 427
+SGG Q+ +A A +C AP F++ DEPT LD
Sbjct: 141 MSGGMLQRMMIALALLC-EAP-FIIADEPTTDLD 172
>gnl|CDD|224031 COG1106, COG1106, Predicted ATPases [General function prediction
only].
Length = 371
Score = 32.1 bits (73), Expect = 0.62
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
Query: 308 IVGDNGAGKTTLLKII---MGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNL 357
I G NGAGK+ LL+ + G+ISP G+ + + + + NL
Sbjct: 27 IYGANGAGKSNLLEALYFLKGLISP--GSESPIPFEREINIWNGSYGKEESNL 77
>gnl|CDD|224082 COG1160, COG1160, Predicted GTPases [General function prediction
only].
Length = 444
Score = 32.2 bits (74), Expect = 0.62
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 4/33 (12%)
Query: 305 RICIVGDNGAGKTTLLKIIMG----IISPTAGT 333
+I I+G GK++L+ I+G I+S AGT
Sbjct: 180 KIAIIGRPNVGKSSLINAILGEERVIVSDIAGT 212
>gnl|CDD|173423 PTZ00133, PTZ00133, ADP-ribosylation factor; Provisional.
Length = 182
Score = 31.4 bits (71), Expect = 0.66
Identities = 22/47 (46%), Positives = 30/47 (63%), Gaps = 7/47 (14%)
Query: 303 ESRICIVGDNGAGKTTLL-KIIMGII---SPTAG--TRTV-HRNLKF 342
E RI +VG + AGKTT+L K+ +G + PT G TV ++NLKF
Sbjct: 17 EVRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNLKF 63
>gnl|CDD|234015 TIGR02788, VirB11, P-type DNA transfer ATPase VirB11. The VirB11
protein is found in the vir locus of Agrobacterium Ti
plasmids where it is involved in the type IV secretion
system for DNA transfer. VirB11 is believed to be an
ATPase. VirB11 is a homolog of the P-like conjugation
system TrbB protein and the Flp pilus sytem protein
TadA.
Length = 308
Score = 31.6 bits (72), Expect = 0.73
Identities = 36/157 (22%), Positives = 56/157 (35%), Gaps = 40/157 (25%)
Query: 306 ICIVGDNGAGKTTLLKIIMGIISPTA-------GTRTV---HRN---LKFGYFSQHHVDQ 352
I I G G+GKTT LK ++ I P TR + H N L + Q
Sbjct: 147 IIISGGTGSGKTTFLKSLVDEI-PKDERIITIEDTREIFLPHPNYVHLFYS-----KGGQ 200
Query: 353 LDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQK----------S 402
+ LL++ +P R LG + GD A F+ +++ G
Sbjct: 201 GLAKVTPKDLLQSCLRMRPD---RIILG--ELRGDEAFDFIRAVNTGHPGSITTLHAGSP 255
Query: 403 RVAFARMCMAAPNFLVLDEPTN-HLDIETIEALGKAI 438
AF ++ + +V LD I L + +
Sbjct: 256 EEAFEQLAL-----MVKSSQAGLGLDFAYIVKLVREV 287
>gnl|CDD|205733 pfam13555, AAA_29, P-loop containing region of AAA domain.
Length = 60
Score = 28.7 bits (65), Expect = 0.86
Identities = 8/22 (36%), Positives = 15/22 (68%)
Query: 308 IVGDNGAGKTTLLKIIMGIISP 329
+ G +G+GK+TL+ I ++ P
Sbjct: 26 LTGPSGSGKSTLIDAIQTLLVP 47
>gnl|CDD|206716 cd04149, Arf6, ADP ribosylation factor 6 (Arf6). Arf6 subfamily.
Arf6 (ADP ribosylation factor 6) proteins localize to
the plasma membrane, where they perform a wide variety
of functions. In its active, GTP-bound form, Arf6 is
involved in cell spreading, Rac-induced formation of
plasma membrane ruffles, cell migration, wound healing,
and Fc-mediated phagocytosis. Arf6 appears to change the
actin structure at the plasma membrane by activating
Rac, a Rho family protein involved in membrane ruffling.
Arf6 is required for and enhances Rac formation of
ruffles. Arf6 can regulate dendritic branching in
hippocampal neurons, and in yeast it localizes to the
growing bud, where it plays a role in polarized growth
and bud site selection. In leukocytes, Arf6 is required
for chemokine-stimulated migration across endothelial
cells. Arf6 also plays a role in down-regulation of
beta2-adrenergic receptors and luteinizing hormone
receptors by facilitating the release of sequestered
arrestin to allow endocytosis. Arf6 is believed to
function at multiple sites on the plasma membrane
through interaction with a specific set of GEFs, GAPs,
and effectors. Arf6 has been implicated in breast cancer
and melanoma cell invasion, and in actin remodelling at
the invasion site of Chlamydia infection.
Length = 168
Score = 30.5 bits (69), Expect = 0.94
Identities = 20/47 (42%), Positives = 29/47 (61%), Gaps = 7/47 (14%)
Query: 303 ESRICIVGDNGAGKTTLL-KIIMGIIS---PTAG--TRTV-HRNLKF 342
E RI ++G + AGKTT+L K+ +G PT G TV ++N+KF
Sbjct: 9 EMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKF 55
>gnl|CDD|206702 cd04129, Rho2, Ras homology family 2 (Rho2) of small guanosine
triphosphatases (GTPases). Rho2 is a fungal GTPase that
plays a role in cell morphogenesis, control of cell wall
integrity, control of growth polarity, and maintenance
of growth direction. Rho2 activates the protein kinase C
homolog Pck2, and Pck2 controls Mok1, the major (1-3)
alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2
regulates the construction of the cell wall. Unlike
Rho1, Rho2 is not an essential protein, but its
overexpression is lethal. Most Rho proteins contain a
lipid modification site at the C-terminus, with a
typical sequence motif CaaX, where a = an aliphatic
amino acid and X = any amino acid. Lipid binding is
essential for proper intracellular localization via
membrane attachment. As with other Rho family GTPases,
the GDP/GTP cycling is regulated by GEFs (guanine
nucleotide exchange factors), GAPs (GTPase-activating
proteins) and GDIs (guanine nucleotide dissociation
inhibitors).
Length = 190
Score = 30.6 bits (69), Expect = 1.1
Identities = 25/73 (34%), Positives = 32/73 (43%), Gaps = 11/73 (15%)
Query: 305 RICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLE 364
++ IVGD GKT+LL + P TV N Y + VD + VQL
Sbjct: 3 KLVIVGDGACGKTSLLYVFTLGEFPEEYHPTVFEN----YVTDCRVDG-----KPVQL-- 51
Query: 365 AAFPGKPQEEYRR 377
A + QEEY R
Sbjct: 52 ALWDTAGQEEYER 64
>gnl|CDD|140236 PTZ00209, PTZ00209, retrotransposon hot spot protein; Provisional.
Length = 693
Score = 31.5 bits (71), Expect = 1.1
Identities = 14/24 (58%), Positives = 16/24 (66%)
Query: 81 KTITQAINNGTADANMSTELTQVF 104
KT + +NN TADA TE TQVF
Sbjct: 628 KTRQRCVNNNTADAEQQTEETQVF 651
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily
archaeal type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. It is found
in a single copy and is homodimeric in prokaryotes, but
six paralogs (excluded from this family) are found in
eukarotes, where SMC proteins are heterodimeric. This
family represents the SMC protein of archaea and a few
bacteria (Aquifex, Synechocystis, etc); the SMC of other
bacteria is described by TIGR02168. The N- and C-terminal
domains of this protein are well conserved, but the
central hinge region is skewed in composition and highly
divergent [Cellular processes, Cell division, DNA
metabolism, Chromosome-associated proteins].
Length = 1164
Score = 31.6 bits (72), Expect = 1.1
Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 6/60 (10%)
Query: 386 GDLALQFVGSLSGGQKSRVAFA-----RMCMAAPNFLVLDEPTNHLDIETIEALGKAINK 440
+Q + ++SGG+KS A + + +P F DE LD +E + K I +
Sbjct: 1065 KGKPVQRLEAMSGGEKSLTALSFIFAIQRYKPSP-FYAFDEVDMFLDGVNVERVAKLIRE 1123
>gnl|CDD|206640 cd00154, Rab, Ras-related in brain (Rab) family of small guanosine
triphosphatases (GTPases). Rab GTPases form the largest
family within the Ras superfamily. There are at least 60
Rab genes in the human genome, and a number of Rab
GTPases are conserved from yeast to humans. Rab GTPases
are small, monomeric proteins that function as molecular
switches to regulate vesicle trafficking pathways. The
different Rab GTPases are localized to the cytosolic
face of specific intracellular membranes, where they
regulate distinct steps in membrane traffic pathways. In
the GTP-bound form, Rab GTPases recruit specific sets of
effector proteins onto membranes. Through their
effectors, Rab GTPases regulate vesicle formation,
actin- and tubulin-dependent vesicle movement, and
membrane fusion. GTPase activating proteins (GAPs)
interact with GTP-bound Rab and accelerate the
hydrolysis of GTP to GDP. Guanine nucleotide exchange
factors (GEFs) interact with GDP-bound Rabs to promote
the formation of the GTP-bound state. Rabs are further
regulated by guanine nucleotide dissociation inhibitors
(GDIs), which mask C-terminal lipid binding and promote
cytosolic localization. While most unicellular organisms
possess 5-20 Rab members, several have been found to
possess 60 or more Rabs; for many of these Rab isoforms,
homologous proteins are not found in other organisms.
Most Rab GTPases contain a lipid modification site at
the C-terminus, with sequence motifs CC, CXC, or CCX.
Lipid binding is essential for membrane attachment, a
key feature of most Rab proteins. Since crystal
structures often lack C-terminal residues, the lipid
modification site is not available for annotation in
many of the CDs in the hierarchy, but is included where
possible.
Length = 159
Score = 30.1 bits (69), Expect = 1.2
Identities = 9/17 (52%), Positives = 14/17 (82%)
Query: 305 RICIVGDNGAGKTTLLK 321
+I ++GD+G GKT+LL
Sbjct: 2 KIVLIGDSGVGKTSLLL 18
>gnl|CDD|234806 PRK00635, PRK00635, excinuclease ABC subunit A; Provisional.
Length = 1809
Score = 31.3 bits (71), Expect = 1.2
Identities = 19/43 (44%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Query: 395 SLSGGQKSRVAFARMCMAA---PNFLVLDEPTNHLDIETIEAL 434
SLSGG+ R+ A +A P VLDEPT L I+AL
Sbjct: 809 SLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKAL 851
>gnl|CDD|219856 pfam08477, Miro, Miro-like protein. Mitochondrial Rho proteins
(Miro-1, and Miro-2), are atypical Rho GTPases. They
have a unique domain organisation, with tandem
GTP-binding domains and two EF hand domains (pfam00036),
that may bind calcium. They are also larger than
classical small GTPases. It has been proposed that they
are involved in mitochondrial homeostasis and apoptosis.
Length = 116
Score = 29.7 bits (67), Expect = 1.3
Identities = 9/26 (34%), Positives = 18/26 (69%)
Query: 305 RICIVGDNGAGKTTLLKIIMGIISPT 330
++ ++GD G+GK++LL ++G P
Sbjct: 1 KVVVIGDKGSGKSSLLSQLVGGEFPP 26
>gnl|CDD|206680 cd01893, Miro1, Mitochondrial Rho family 1 (Miro1), N-terminal.
Miro1 subfamily. Miro (mitochondrial Rho) proteins have
tandem GTP-binding domains separated by a linker region
containing putative calcium-binding EF hand motifs.
Genes encoding Miro-like proteins were found in several
eukaryotic organisms. This CD represents the N-terminal
GTPase domain of Miro proteins. These atypical Rho
GTPases have roles in mitochondrial homeostasis and
apoptosis. Most Rho proteins contain a lipid
modification site at the C-terminus; however, Miro is
one of few Rho subfamilies that lack this feature.
Length = 168
Score = 30.0 bits (68), Expect = 1.3
Identities = 11/24 (45%), Positives = 17/24 (70%), Gaps = 3/24 (12%)
Query: 305 RICIVGDNGAGKTTLLKIIMGIIS 328
RI ++GD G GK++L IM ++S
Sbjct: 4 RIVLIGDEGVGKSSL---IMSLVS 24
>gnl|CDD|213246 cd03279, ABC_sbcCD, ATP-binding cassette domain of sbcCD. SbcCD
and other Mre11/Rad50 (MR) complexes are implicated in
the metabolism of DNA ends. They cleave ends sealed by
hairpin structures and are thought to play a role in
removing protein bound to DNA termini.
Length = 213
Score = 30.3 bits (69), Expect = 1.4
Identities = 35/165 (21%), Positives = 53/165 (32%), Gaps = 49/165 (29%)
Query: 307 CIVGDNGAGKTTLLKII----MGIISPTAGTRTVHRNLKFG--------YFSQHH----- 349
I G GAGK+T+L I G + G F
Sbjct: 32 LICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVFAPGEDTAEVSFTFQLGGKKYRV 91
Query: 350 VDQLDMNL----RCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVA 405
++ R V L PQ E+ R L + V +LSGG+ +
Sbjct: 92 ERSRGLDYDQFTRIVLL--------PQGEFDRFL----------ARPVSTLSGGETFLAS 133
Query: 406 FA-RMCMA--------AP-NFLVLDEPTNHLDIETIEALGKAINK 440
+ + ++ A L +DE LD E +EA+ A+
Sbjct: 134 LSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALEL 178
>gnl|CDD|206644 cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf-like (Arl) small
GTPases. Arf (ADP-ribosylation factor)/Arl (Arf-like)
small GTPases. Arf proteins are activators of
phospholipase D isoforms. Unlike Ras proteins they lack
cysteine residues at their C-termini and therefore are
unlikely to be prenylated. Arfs are N-terminally
myristoylated. Members of the Arf family are regulators
of vesicle formation in intracellular traffic that
interact reversibly with membranes of the secretory and
endocytic compartments in a GTP-dependent manner. They
depart from other small GTP-binding proteins by a unique
structural device, interswitch toggle, that implements
front-back communication from N-terminus to the
nucleotide binding site. Arf-like (Arl) proteins are
close relatives of the Arf, but only Arl1 has been shown
to function in membrane traffic like the Arf proteins.
Arl2 has an unrelated function in the folding of native
tubulin, and Arl4 may function in the nucleus. Most
other Arf family proteins are so far relatively poorly
characterized. Thus, despite their significant sequence
homologies, Arf family proteins may regulate unrelated
functions.
Length = 158
Score = 29.9 bits (68), Expect = 1.4
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 7/45 (15%)
Query: 305 RICIVGDNGAGKTTLLKIIMGI----ISPTAGT--RTV-HRNLKF 342
RI ++G +GAGKTT+L + PT G TV ++N+KF
Sbjct: 1 RILMLGLDGAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNVKF 45
>gnl|CDD|232933 TIGR00348, hsdR, type I site-specific deoxyribonuclease, HsdR
family. This gene is part of the type I restriction and
modification system which is composed of three
polypeptides R (restriction endonuclease), M
(modification) and S (specificity). This group of
enzymes recognize specific short DNA sequences and have
an absolute requirement for ATP (or dATP) and
S-adenosyl-L-methionine. They also catalyse the
reactions of EC 2.1.1.72 and EC 2.1.1.73, with similar
site specificity.(J. Mol. Biol. 271 (3), 342-348
(1997)). Members of this family are assumed to differ
from each other in DNA site specificity [DNA metabolism,
Restriction/modification].
Length = 667
Score = 30.8 bits (70), Expect = 1.5
Identities = 27/104 (25%), Positives = 42/104 (40%), Gaps = 9/104 (8%)
Query: 169 DRHFLDSVPTDIFHLHSQRID--TYRGNYEAFDKIKTEKLKNQQREIEAQRMHREHVQKF 226
D+ LD+ +IF L +RI T E K K L N+ R + EH KF
Sbjct: 451 DKKKLDAFFDEIFELLPERIREITKESLKEKLQKTKK-ILFNEDRLESIAKDIAEHYAKF 509
Query: 227 IDTFRYNAN-RASSVQSKI---KQLERLPELKPIEKEVEVVLKF 266
+ F++ A A S + + L+ EL + +V+
Sbjct: 510 KELFKFKAMVVAISRYACVEEKNALDE--ELNEKFEASAIVMTG 551
>gnl|CDD|128474 smart00177, ARF, ARF-like small GTPases; ARF, ADP-ribosylation
factor. Ras homologues involved in vesicular transport.
Activator of phospholipase D isoforms. Unlike Ras
proteins they lack cysteine residues at their C-termini
and therefore are unlikely to be prenylated. ARFs are
N-terminally myristoylated. Contains ATP/GTP-binding
motif (P-loop).
Length = 175
Score = 29.9 bits (67), Expect = 1.6
Identities = 20/47 (42%), Positives = 28/47 (59%), Gaps = 7/47 (14%)
Query: 303 ESRICIVGDNGAGKTTLL-KIIMGIIS---PTAG--TRTV-HRNLKF 342
E RI +VG + AGKTT+L K+ +G PT G TV ++N+ F
Sbjct: 13 EMRILMVGLDAAGKTTILYKLKLGESVTTIPTIGFNVETVTYKNISF 59
>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain. This domain is
found at the N terminus of SMC proteins. The SMC
(structural maintenance of chromosomes) superfamily
proteins have ATP-binding domains at the N- and
C-termini, and two extended coiled-coil domains separated
by a hinge in the middle. The eukaryotic SMC proteins
form two kind of heterodimers: the SMC1/SMC3 and the
SMC2/SMC4 types. These heterodimers constitute an
essential part of higher order complexes, which are
involved in chromatin and DNA dynamics. This family also
includes the RecF and RecN proteins that are involved in
DNA metabolism and recombination.
Length = 1162
Score = 31.1 bits (70), Expect = 1.7
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 6/53 (11%)
Query: 395 SLSGGQKSRVA----FA-RMCMAAPNFLVLDEPTNHLDIETIEALGKAINKYT 442
+LSGG+K+ VA FA + AP F +LDE LD + + + + + +
Sbjct: 1078 NLSGGEKTLVALALIFAIQKYRPAP-FYLLDEIDAALDDQNVSRVANYLKELS 1129
>gnl|CDD|238674 cd01378, MYSc_type_I, Myosin motor domain, type I myosins. Myosin I
generates movement at the leading edge in cell motility,
and class I myosins have been implicated in phagocytosis
and vesicle transport. Myosin I, an unconventional
myosin, does not form dimers. This catalytic (head)
domain has ATPase activity and belongs to the larger
group of P-loop NTPases. Myosins are actin-dependent
molecular motors that play important roles in muscle
contraction, cell motility, and organelle transport. The
head domain is a molecular motor, which utilizes ATP
hydrolysis to generate directed movement toward the plus
end along actin filaments. A cyclical interaction
between myosin and actin provides the driving force.
Rates of ATP hydrolysis and consequently the speed of
movement along actin filaments vary widely, from about
0.04 micrometer per second for myosin I to 4.5
micrometer per second for myosin II in skeletal muscle.
Myosin II moves in discrete steps about 5-10 nm long and
generates 1-5 piconewtons of force. Upon ATP binding,
the myosin head dissociates from an actin filament. ATP
hydrolysis causes the head to pivot and associate with a
new actin subunit. The release of Pi causes the head to
pivot and move the filament (power stroke). Release of
ADP completes the cycle.
Length = 674
Score = 30.6 bits (70), Expect = 1.7
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 306 ICIVGDNGAGKTTLLKIIMGIISPTAGTRT 335
+ I G++GAGKT K IM I+ +G
Sbjct: 89 VIISGESGAGKTEAAKKIMQYIAAVSGGGQ 118
>gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain. Proteins
with a small GTP-binding domain recognized by this model
include Ras, RhoA, Rab11, translation elongation factor
G, translation initiation factor IF-2, tetratcycline
resistance protein TetM, CDC42, Era, ADP-ribosylation
factors, tdhF, and many others. In some proteins the
domain occurs more than once.This model recognizes a
large number of small GTP-binding proteins and related
domains in larger proteins. Note that the alpha chains
of heterotrimeric G proteins are larger proteins in
which the NKXD motif is separated from the GxxxxGK[ST]
motif (P-loop) by a long insert and are not easily
detected by this model [Unknown function, General].
Length = 162
Score = 29.6 bits (67), Expect = 1.8
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 305 RICIVGDNGAGKTTLL-KIIMGIISPTAGTRTVHRN 339
+I IVGD GK+TLL +++ IS T RN
Sbjct: 3 KIVIVGDPNVGKSTLLNRLLGNKISITEYKPGTTRN 38
>gnl|CDD|185364 PRK15467, PRK15467, ethanolamine utilization protein EutP;
Provisional.
Length = 158
Score = 29.6 bits (66), Expect = 1.9
Identities = 15/35 (42%), Positives = 18/35 (51%)
Query: 305 RICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN 339
RI VG GAGKTTL + G + T+ V N
Sbjct: 3 RIAFVGAVGAGKTTLFNALQGNYTLARKTQAVEFN 37
>gnl|CDD|221803 pfam12846, AAA_10, AAA-like domain. This family of domains contain
a P-loop motif that is characteristic of the AAA
superfamily. Many of the proteins in this family are
conjugative transfer proteins.
Length = 316
Score = 30.5 bits (69), Expect = 1.9
Identities = 10/19 (52%), Positives = 16/19 (84%)
Query: 306 ICIVGDNGAGKTTLLKIIM 324
+ IVG +G+GK+TLLK++
Sbjct: 4 MLIVGPSGSGKSTLLKLLA 22
>gnl|CDD|206717 cd04150, Arf1_5_like, ADP-ribosylation factor-1 (Arf1) and
ADP-ribosylation factor-5 (Arf5). The Arf1-Arf5-like
subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and
related proteins. Arfs1-5 are soluble proteins that are
crucial for assembling coat proteins during vesicle
formation. Each contains an N-terminal myristoylated
amphipathic helix that is folded into the protein in the
GDP-bound state. GDP/GTP exchange exposes the helix,
which anchors to the membrane. Following GTP hydrolysis,
the helix dissociates from the membrane and folds back
into the protein. A general feature of Arf1-5 signaling
may be the cooperation of two Arfs at the same site.
Arfs1-5 are generally considered to be interchangeable
in function and location, but some specific functions
have been assigned. Arf1 localizes to the
early/cis-Golgi, where it is activated by GBF1 and
recruits the coat protein COPI. It also localizes to the
trans-Golgi network (TGN), where it is activated by
BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA
proteins. Humans, but not rodents and other lower
eukaryotes, lack Arf2. Human Arf3 shares 96% sequence
identity with Arf1 and is believed to generally function
interchangeably with Arf1. Human Arf4 in the activated
(GTP-bound) state has been shown to interact with the
cytoplasmic domain of epidermal growth factor receptor
(EGFR) and mediate the EGF-dependent activation of
phospholipase D2 (PLD2), leading to activation of the
activator protein 1 (AP-1) transcription factor. Arf4
has also been shown to recognize the C-terminal sorting
signal of rhodopsin and regulate its incorporation into
specialized post-Golgi rhodopsin transport carriers
(RTCs). There is some evidence that Arf5 functions at
the early-Golgi and the trans-Golgi to affect
Golgi-associated alpha-adaptin homology Arf-binding
proteins (GGAs).
Length = 159
Score = 29.7 bits (67), Expect = 2.0
Identities = 20/45 (44%), Positives = 30/45 (66%), Gaps = 7/45 (15%)
Query: 305 RICIVGDNGAGKTTLL-KIIMG-IIS--PTAG--TRTV-HRNLKF 342
RI +VG + AGKTT+L K+ +G I++ PT G TV ++N+ F
Sbjct: 2 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISF 46
>gnl|CDD|224081 COG1159, Era, GTPase [General function prediction only].
Length = 298
Score = 30.2 bits (69), Expect = 2.2
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 5/38 (13%)
Query: 305 RICIVGDNGAGKTTLLKIIMG----IISPTAGTRTVHR 338
+ I+G GK+TLL ++G I+SP T T +R
Sbjct: 8 FVAIIGRPNVGKSTLLNALVGQKISIVSPKPQT-TRNR 44
>gnl|CDD|223637 COG0563, Adk, Adenylate kinase and related kinases [Nucleotide
transport and metabolism].
Length = 178
Score = 29.6 bits (67), Expect = 2.2
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 305 RICIVGDNGAGKTTLLKIIM 324
RI I+G GAGK+TL K +
Sbjct: 2 RILILGPPGAGKSTLAKKLA 21
>gnl|CDD|221957 pfam13175, AAA_15, AAA ATPase domain. This family of domains
contain a P-loop motif that is characteristic of the AAA
superfamily.
Length = 320
Score = 30.1 bits (68), Expect = 2.3
Identities = 9/16 (56%), Positives = 15/16 (93%)
Query: 308 IVGDNGAGKTTLLKII 323
I+G+NG+GKTT+L+ +
Sbjct: 27 IIGENGSGKTTILEAL 42
>gnl|CDD|206646 cd00880, Era_like, E. coli Ras-like protein (Era)-like GTPase. The
Era (E. coli Ras-like protein)-like family includes
several distinct subfamilies (TrmE/ThdF, FeoB, YihA
(EngB), Era, and EngA/YfgK) that generally show sequence
conservation in the region between the Walker A and B
motifs (G1 and G3 box motifs), to the exclusion of other
GTPases. TrmE is ubiquitous in bacteria and is a
widespread mitochondrial protein in eukaryotes, but is
absent from archaea. The yeast member of TrmE family,
MSS1, is involved in mitochondrial translation;
bacterial members are often present in
translation-related operons. FeoB represents an unusual
adaptation of GTPases for high-affinity iron (II)
transport. YihA (EngB) family of GTPases is typified by
the E. coli YihA, which is an essential protein involved
in cell division control. Era is characterized by a
distinct derivative of the KH domain (the pseudo-KH
domain) which is located C-terminal to the GTPase
domain. EngA and its orthologs are composed of two
GTPase domains and, since the sequences of the two
domains are more similar to each other than to other
GTPases, it is likely that an ancient gene duplication,
rather than a fusion of evolutionarily distinct GTPases,
gave rise to this family.
Length = 161
Score = 29.5 bits (67), Expect = 2.3
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 5/38 (13%)
Query: 308 IVGDNGAGKTTLLKIIMG----IISPTAGTRTVHRNLK 341
I G GK++LL ++G I+SP GT T K
Sbjct: 2 IFGRPNVGKSSLLNALLGQNVGIVSPIPGT-TRDPVRK 38
>gnl|CDD|213209 cd03242, ABC_RecF, ATP-binding cassette domain of RecF. RecF is a
recombinational DNA repair ATPase that maintains
replication in the presence of DNA damage. When
replication is prematurely disrupted by DNA damage,
several recF pathway gene products play critical roles
processing the arrested replication fork, allowing it to
resume and complete its task. This CD represents the
nucleotide binding domain of RecF. RecF belongs to a
large superfamily of ABC transporters involved in the
transport of a wide variety of different compounds
including sugars, ions, peptides, and more complex
organic molecules. The nucleotide binding domain shows
the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases with a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 270
Score = 30.0 bits (68), Expect = 2.3
Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 308 IVGDNGAGKTTLLKIIMGIISPTAGTRTVH 337
+VG+N GKT LL+ I +++ RT
Sbjct: 26 LVGENAQGKTNLLEAI-SLLATGKSHRTSR 54
>gnl|CDD|206641 cd00157, Rho, Ras homology family (Rho) of small guanosine
triphosphatases (GTPases). Members of the Rho (Ras
homology) family include RhoA, Cdc42, Rac, Rnd, Wrch1,
RhoBTB, and Rop. There are 22 human Rho family members
identified currently. These proteins are all involved in
the reorganization of the actin cytoskeleton in response
to external stimuli. They also have roles in cell
transformation by Ras in cytokinesis, in focal adhesion
formation and in the stimulation of stress-activated
kinase. These various functions are controlled through
distinct effector proteins and mediated through a
GTP-binding/GTPase cycle involving three classes of
regulating proteins: GAPs (GTPase-activating proteins),
GEFs (guanine nucleotide exchange factors), and GDIs
(guanine nucleotide dissociation inhibitors). Most Rho
proteins contain a lipid modification site at the
C-terminus, with a typical sequence motif CaaX, where a
= an aliphatic amino acid and X = any amino acid. Lipid
binding is essential for membrane attachment, a key
feature of most Rho proteins. Since crystal structures
often lack C-terminal residues, this feature is not
available for annotation in many of the CDs in the
hierarchy.
Length = 171
Score = 29.4 bits (67), Expect = 2.4
Identities = 9/15 (60%), Positives = 10/15 (66%)
Query: 306 ICIVGDNGAGKTTLL 320
I +VGD GKT LL
Sbjct: 3 IVVVGDGAVGKTCLL 17
>gnl|CDD|206721 cd04155, Arl3, Arf-like 3 (Arl3) GTPase. Arl3 (Arf-like 3) is an
Arf family protein that differs from most Arf family
members in the N-terminal extension. In is inactive,
GDP-bound form, the N-terminal extension forms an
elongated loop that is hydrophobically anchored into the
membrane surface; however, it has been proposed that
this region might form a helix in the GTP-bound form.
The delta subunit of the rod-specific cyclic GMP
phosphodiesterase type 6 (PDEdelta) is an Arl3 effector.
Arl3 binds microtubules in a regulated manner to alter
specific aspects of cytokinesis via interactions with
retinitis pigmentosa 2 (RP2). It has been proposed that
RP2 functions in concert with Arl3 to link the cell
membrane and the cytoskeleton in photoreceptors as part
of the cell signaling or vesicular transport machinery.
In mice, the absence of Arl3 is associated with abnormal
epithelial cell proliferation and cyst formation.
Length = 174
Score = 29.3 bits (66), Expect = 2.4
Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 4/34 (11%)
Query: 303 ESRICIVGDNGAGKTTLLKII----MGIISPTAG 332
E RI ++G + AGKTT+LK + + I+PT G
Sbjct: 15 EVRILLLGLDNAGKTTILKQLASEDISHITPTQG 48
>gnl|CDD|236167 PRK08154, PRK08154, anaerobic benzoate catabolism transcriptional
regulator; Reviewed.
Length = 309
Score = 29.9 bits (68), Expect = 2.5
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 299 GATLESRICIVGDNGAGKTTL 319
A RI ++G GAGK+TL
Sbjct: 129 RAARRRRIALIGLRGAGKSTL 149
>gnl|CDD|200328 TIGR03819, heli_sec_ATPase, helicase/secretion neighborhood ATPase.
Members of this protein family comprise a distinct
clade of putative ATPase associated with an integral
membrane complex likely to act in pilus formation,
secretion, or conjugal transfer. The association of most
members with a nearby gene for a DEAH-box helicase
suggests a role in conjugal transfer.
Length = 340
Score = 30.0 bits (68), Expect = 2.6
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 308 IVGDNGAGKTTLLKIIMGIISPT 330
+ G G+GKTTLL ++ ++ P
Sbjct: 183 VSGGTGSGKTTLLSALLALVPPD 205
>gnl|CDD|232804 TIGR00064, ftsY, signal recognition particle-docking protein FtsY.
There is a weak division between FtsY and SRP54; both
are GTPases. In E.coli, ftsY is an essential gene
located in an operon with cell division genes ftsE and
ftsX, but its apparent function is as the signal
recognition particle docking protein [Protein fate,
Protein and peptide secretion and trafficking].
Length = 272
Score = 29.9 bits (68), Expect = 2.6
Identities = 17/82 (20%), Positives = 29/82 (35%), Gaps = 18/82 (21%)
Query: 237 ASSVQSKIKQLERLPELKPIEKEVEVVLKFPDTELLSPPILQLSEVNFEYVPGKPILTNV 296
+ +K+ + ++K E E++ ++ L + + E N V
Sbjct: 24 VEKIIEALKKELKGKKVKDAELLKEILKEYLKEILKETDLELIVEENKPNV--------- 74
Query: 297 CLGATLESRICIVGDNGAGKTT 318
I VG NG GKTT
Sbjct: 75 ---------ILFVGVNGVGKTT 87
>gnl|CDD|180975 PRK07429, PRK07429, phosphoribulokinase; Provisional.
Length = 327
Score = 30.0 bits (68), Expect = 2.7
Identities = 8/16 (50%), Positives = 12/16 (75%)
Query: 306 ICIVGDNGAGKTTLLK 321
+ + GD+G GKTT L+
Sbjct: 11 LGVAGDSGCGKTTFLR 26
>gnl|CDD|236686 PRK10416, PRK10416, signal recognition particle-docking protein
FtsY; Provisional.
Length = 318
Score = 29.7 bits (68), Expect = 2.9
Identities = 27/96 (28%), Positives = 34/96 (35%), Gaps = 32/96 (33%)
Query: 223 VQKFIDTFRYNANRASSVQSKIKQLERLPELKPIEKEVEVVLKFPDTELLSPPILQLSEV 282
++ I+ R R K L+ ELK + KE EL IL+ E
Sbjct: 66 TEEIIEELRERVKR--------KNLKDPEELKELLKE----------ELAE--ILEPVEK 105
Query: 283 NFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTT 318
KP V I +VG NG GKTT
Sbjct: 106 PLNIEEKKP---FV---------ILVVGVNGVGKTT 129
>gnl|CDD|234608 PRK00064, recF, recombination protein F; Reviewed.
Length = 361
Score = 29.7 bits (68), Expect = 3.0
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 308 IVGDNGAGKTTLLKIIMGIISPTAGTRTVH 337
+VG+NG GKT LL+ I +++P RT
Sbjct: 28 LVGENGQGKTNLLEAI-YLLAPGRSHRTAR 56
>gnl|CDD|238836 cd01673, dNK, Deoxyribonucleoside kinase (dNK) catalyzes the
phosphorylation of deoxyribonucleosides to yield
corresponding monophosphates (dNMPs). This family
consists of various deoxynucleoside kinases including
deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC
2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC
2.7.1.21) kinases. They are key enzymes in the salvage
of deoxyribonucleosides originating from extra- or
intracellular breakdown of DNA.
Length = 193
Score = 29.1 bits (66), Expect = 3.1
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 305 RICIVGDNGAGKTTLLKII 323
I + G+ GAGK+TL K +
Sbjct: 1 VIVVEGNIGAGKSTLAKEL 19
>gnl|CDD|177661 PLN00023, PLN00023, GTP-binding protein; Provisional.
Length = 334
Score = 29.8 bits (67), Expect = 3.1
Identities = 9/20 (45%), Positives = 17/20 (85%)
Query: 305 RICIVGDNGAGKTTLLKIIM 324
R+ +VGD+G GK++L+ +I+
Sbjct: 23 RVLVVGDSGVGKSSLVHLIV 42
>gnl|CDD|222194 pfam13521, AAA_28, AAA domain.
Length = 162
Score = 28.7 bits (65), Expect = 3.4
Identities = 10/17 (58%), Positives = 11/17 (64%)
Query: 305 RICIVGDNGAGKTTLLK 321
RI I G GKTTLL+
Sbjct: 1 RIVITGGPSTGKTTLLE 17
>gnl|CDD|131515 TIGR02462, pyranose_ox, pyranose oxidase. Pyranose oxidase (also
called glucose 2-oxidase) converts D-glucose and
molecular oxygen to 2-dehydro-D-glucose and hydrogen
peroxide. Peroxide production is believed to be
important to the wood rot fungi in which this enzyme is
found for lignin degradation.
Length = 544
Score = 29.8 bits (67), Expect = 3.6
Identities = 28/137 (20%), Positives = 41/137 (29%), Gaps = 32/137 (23%)
Query: 117 ARASVILAGLGFTPEMQKRATKHFSGGWRKMAIIW------LENYLQNWPTTLLVVSHDR 170
A V+ G P Q F R L Y+ T +
Sbjct: 268 ADVYVLACGAVHNP--QILVNSGFGQLGRPDPTNPPPLLPSLGRYITEQSMTFCQIVLST 325
Query: 171 HFLDSVPTDIFHLHSQRIDTYRGNYEAFDKIKTEKLKNQQ-------REIEAQRM----- 218
+DSV +D L D ++ +K+ +K+ + R+ E Q
Sbjct: 326 ELVDSVRSDPRGL-----DWWK------EKVANHMMKHPEDPLPIPFRDPEPQVTTPFTE 374
Query: 219 -HREHVQKFIDTFRYNA 234
H H Q D F Y A
Sbjct: 375 EHPWHTQIHRDAFSYGA 391
>gnl|CDD|206704 cd04132, Rho4_like, Ras homology family 4 (Rho4) of small guanosine
triphosphatases (GTPases)-like. Rho4 is a GTPase that
controls septum degradation by regulating secretion of
Eng1 or Agn1 during cytokinesis. Rho4 also plays a role
in cell morphogenesis. Rho4 regulates septation and cell
morphology by controlling the actin cytoskeleton and
cytoplasmic microtubules. The localization of Rho4 is
modulated by Rdi1, which may function as a GDI, and by
Rga9, which is believed to function as a GAP. In S.
pombe, both Rho4 deletion and Rho4 overexpression result
in a defective cell wall, suggesting a role for Rho4 in
maintaining cell wall integrity. Most Rho proteins
contain a lipid modification site at the C-terminus,
with a typical sequence motif CaaX, where a = an
aliphatic amino acid and X = any amino acid. Lipid
binding is essential for membrane attachment, a key
feature of most Rho proteins.
Length = 197
Score = 28.8 bits (65), Expect = 3.7
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 302 LESRICIVGDNGAGKTTLL 320
L+ +I +VGD G GKT LL
Sbjct: 2 LKVKIVVVGDGGCGKTCLL 20
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and
chromosome partitioning].
Length = 1163
Score = 29.7 bits (67), Expect = 3.9
Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 6/58 (10%)
Query: 390 LQFVGSLSGGQKSRVA----FA-RMCMAAPNFLVLDEPTNHLDIETIEALGKAINKYT 442
LQ + LSGG+KS A FA + AP F VLDE LD +E + + I + +
Sbjct: 1061 LQSLSLLSGGEKSLTALALLFAIQKYRPAP-FYVLDEVDAALDDANVERVARLIKEMS 1117
>gnl|CDD|234854 PRK00881, purH, bifunctional
phosphoribosylaminoimidazolecarboxamide
formyltransferase/IMP cyclohydrolase; Provisional.
Length = 513
Score = 29.7 bits (68), Expect = 3.9
Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 3/27 (11%)
Query: 356 NLRCVQLLEAAFPGKPQEEYRRQLGGF 382
NLR LLE FPG + +++ GG
Sbjct: 347 NLR---LLECPFPGGWEGDFKSVSGGL 370
>gnl|CDD|213249 cd03282, ABC_MSH4_euk, ATP-binding cassette domain of eukaryotic
MutS4 homolog. The MutS protein initiates DNA mismatch
repair by recognizing mispaired and unpaired bases
embedded in duplex DNA and activating endo- and
exonucleases to remove the mismatch. Members of the MutS
family possess C-terminal domain with a conserved ATPase
activity that belongs to the ATP binding cassette (ABC)
superfamily. MutS homologs (MSH) have been identified in
most prokaryotic and all eukaryotic organisms examined.
Prokaryotes have two homologs (MutS1 and MutS2), whereas
seven MSH proteins (MSH1 to MSH7) have been identified
in eukaryotes. The homodimer MutS1 and heterodimers
MSH2-MSH3 and MSH2-MSH6 are primarily involved in
mitotic mismatch repair, whereas MSH4-MSH5 is involved
in resolution of Holliday junctions during meiosis. All
members of the MutS family contain the highly conserved
Walker A/B ATPase domain, and many share a common
mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and
MSH4-MSH5 dimerize to form sliding clamps, and
recognition of specific DNA structures or lesions
results in ADP/ATP exchange.
Length = 204
Score = 28.9 bits (65), Expect = 3.9
Identities = 22/93 (23%), Positives = 34/93 (36%), Gaps = 21/93 (22%)
Query: 275 PILQLSEVNFEYVPGKPILTNVCLGATLESRICIV-GDNGAGKTTLLKII--------MG 325
PIL + I ++ L SR I+ G N +GK+T LK I +G
Sbjct: 8 PIL-------DRDKKNFIPNDIYL-TRGSSRFHIITGPNMSGKSTYLKQIALLAIMAQIG 59
Query: 326 -IISPTAGTRTVHRNLKFGYFSQHHVDQLDMNL 357
+ T + L + D ++ NL
Sbjct: 60 CFVPAEYATLPIFNRL---LSRLSNDDSMERNL 89
>gnl|CDD|222163 pfam13479, AAA_24, AAA domain. This AAA domain is found in a wide
variety of presumed phage proteins.
Length = 201
Score = 28.8 bits (65), Expect = 4.4
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 305 RICIVGDNGAGKTTLLK 321
++ I G G GKT+L K
Sbjct: 5 KVLIYGPPGIGKTSLAK 21
>gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane
component/ATP-binding component; Provisional.
Length = 547
Score = 29.6 bits (67), Expect = 4.4
Identities = 46/197 (23%), Positives = 72/197 (36%), Gaps = 37/197 (18%)
Query: 243 KIKQLERLPELKPIEKEVEVVLKFPDTELLSPPILQLSEVNFEYVPGKPILTNVCLGATL 302
K+ +L L P + E FPD + L L V F Y + + L T+
Sbjct: 298 KLNKLA----LAPYKAEFPRPQAFPDWQTLE-----LRNVTFAYQDNGFSVGPINL--TI 346
Query: 303 ESRICI--VGDNGAGKTTLLKIIMGIISPTAG------------TRTVHRNLKFGYFSQH 348
+ + +G NG+GK+TL ++ G+ P +G +R L F+
Sbjct: 347 KRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDF 406
Query: 349 HVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQ----FVGSLSGGQKSRV 404
H+ QLL + L ++ L L+ LS GQK R+
Sbjct: 407 HLFD--------QLLGPEGKPANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRL 458
Query: 405 AFARMCMAAPNFLVLDE 421
A + L+LDE
Sbjct: 459 ALLLALAEERDILLLDE 475
>gnl|CDD|213245 cd03278, ABC_SMC_barmotin, ATP-binding cassette domain of barmotin,
a member of the SMC protein family. Barmotin is a tight
junction-associated protein expressed in rat epithelial
cells which is thought to have an important regulatory
role in tight junction barrier function. Barmotin
belongs to the SMC protein family. SMC proteins are
large (approximately 110 to 170 kDa), and each is
arranged into five recognizable domains. Amino-acid
sequence homology of SMC proteins between species is
largely confined to the amino- and carboxy-terminal
globular domains. The amino-terminal domain contains a
'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the
single-letter amino-acid code), which by mutational
studies has been shown to be essential in several
proteins. The carboxy-terminal domain contains a
sequence (the DA-box) that resembles a 'Walker B' motif,
and a motif with homology to the signature sequence of
the ATP-binding cassette (ABC) family of ATPases. The
sequence homology within the carboxy-terminal domain is
relatively high within the SMC1-SMC4 group, whereas SMC5
and SMC6 show some divergence in both of these
sequences. In eukaryotic cells, the proteins are found
as heterodimers of SMC1 paired with SMC3, SMC2 with
SMC4, and SMC5 with SMC6 (formerly known as Rad18).
Length = 197
Score = 28.6 bits (65), Expect = 4.6
Identities = 39/165 (23%), Positives = 67/165 (40%), Gaps = 57/165 (34%)
Query: 307 CIVGDNGAGKTTL---LKIIMG--------------IISPTAGTR--------TVHRNLK 341
IVG NG+GK+ + ++ ++G +I + TR T+ +
Sbjct: 26 AIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNS 85
Query: 342 FGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQK 401
G +S + Q D++ +++EA PGK +Q + LSGG+K
Sbjct: 86 DGRYSI--ISQGDVS----EIIEA--PGKK------------------VQRLSLLSGGEK 119
Query: 402 SRVA----FA-RMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441
+ A FA +P F VLDE LD +E + + ++
Sbjct: 120 ALTALALLFAIFRVRPSP-FCVLDEVDAALDDANVERFARLLKEF 163
>gnl|CDD|238026 cd00071, GMPK, Guanosine monophosphate kinase (GMPK, EC 2.7.4.8),
also known as guanylate kinase (GKase), catalyzes the
reversible phosphoryl transfer from adenosine
triphosphate (ATP) to guanosine monophosphate (GMP) to
yield adenosine diphosphate (ADP) and guanosine
diphosphate (GDP). It plays an essential role in the
biosynthesis of guanosine triphosphate (GTP). This
enzyme is also important for the activation of some
antiviral and anticancer agents, such as acyclovir,
ganciclovir, carbovir, and thiopurines.
Length = 137
Score = 28.3 bits (64), Expect = 4.6
Identities = 9/19 (47%), Positives = 14/19 (73%)
Query: 306 ICIVGDNGAGKTTLLKIIM 324
I + G +G GK+TLLK ++
Sbjct: 2 IVLSGPSGVGKSTLLKRLL 20
>gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional.
Length = 1470
Score = 29.4 bits (66), Expect = 4.7
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 393 VGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD 427
V LS Q+ R+ A +A P+ + +DEPT+ LD
Sbjct: 1017 VTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1051
Score = 29.0 bits (65), Expect = 6.3
Identities = 14/35 (40%), Positives = 18/35 (51%)
Query: 396 LSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIET 430
+SGGQK RV M + L +DE + LD T
Sbjct: 337 ISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSST 371
>gnl|CDD|234401 TIGR03925, T7SS_EccC_b, type VII secretion protein EccCb. This
model represents the C-terminal domain or EccCb subunit
of the type VII secretion protein EccC as found in the
Actinobacteria. Type VII secretion is defined more
broadly as including secretion systems for ESAT-6-like
proteins in the Firmicutes as well as in the
Actinobacteria, but this family does not show close
homologs in the Firmicutes [Protein fate, Protein and
peptide secretion and trafficking].
Length = 566
Score = 29.2 bits (66), Expect = 4.7
Identities = 9/17 (52%), Positives = 13/17 (76%)
Query: 308 IVGDNGAGKTTLLKIIM 324
+ GD+ +GKTTLL+ I
Sbjct: 368 VFGDSESGKTTLLRAIA 384
>gnl|CDD|206643 cd00877, Ran, Ras-related nuclear proteins (Ran)/TC4 family of
small GTPases. Ran GTPase is involved in diverse
biological functions, such as nuclear transport, spindle
formation during mitosis, DNA replication, and cell
division. Among the Ras superfamily, Ran is a unique
small G protein. It does not have a lipid modification
motif at the C-terminus to bind to the membrane, which
is often observed within the Ras superfamily. Ran may
therefore interact with a wide range of proteins in
various intracellular locations. Like other GTPases, Ran
exists in GTP- and GDP-bound conformations that interact
differently with effectors. Conversion between these
forms and the assembly or disassembly of effector
complexes requires the interaction of regulator
proteins. The intrinsic GTPase activity of Ran is very
low, but it is greatly stimulated by a GTPase-activating
protein (RanGAP1) located in the cytoplasm. By contrast,
RCC1, a guanine nucleotide exchange factor that
generates RanGTP, is bound to chromatin and confined to
the nucleus. Ran itself is mobile and is actively
imported into the nucleus by a mechanism involving
NTF-2. Together with the compartmentalization of its
regulators, this is thought to produce a relatively high
concentration of RanGTP in the nucleus.
Length = 166
Score = 28.4 bits (64), Expect = 4.8
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 304 SRICIVGDNGAGKTTLLK 321
++ +VGD G GKTT +K
Sbjct: 1 FKLVLVGDGGTGKTTFVK 18
>gnl|CDD|221159 pfam11655, DUF2589, Protein of unknown function (DUF2589). This
family of proteins has no known function.
Length = 157
Score = 28.4 bits (64), Expect = 4.8
Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 5/74 (6%)
Query: 213 IEAQRMHREHVQKFIDT-FRYNANRASSVQSKIKQLERLPELKPIEKEVEVVLKFPDTEL 271
IEAQ M + F+ F + ++A V +K+ +P+ E EV + P L
Sbjct: 14 IEAQDMLAQQYVDFLQQFFDKDGDKARMVPFSVKR--AVPDEHGTGTETEV--EVPLLAL 69
Query: 272 LSPPILQLSEVNFE 285
+ P L + EV +
Sbjct: 70 VPIPSLAIDEVTVD 83
>gnl|CDD|99980 cd03808, GT1_cap1E_like, This family is most closely related to the
GT1 family of glycosyltransferases. cap1E in
Streptococcus pneumoniae is required for the synthesis
of type 1 capsular polysaccharides.
Length = 359
Score = 29.1 bits (66), Expect = 5.2
Identities = 12/51 (23%), Positives = 19/51 (37%), Gaps = 12/51 (23%)
Query: 125 GLGFTPEMQKRATKHF-SGGWRKMAIIWLENYLQNWPTTLLVVSH-DRHFL 173
GLGF F SGG ++ + LE + ++ + DR
Sbjct: 113 GLGF----------VFTSGGLKRRLYLLLERLALRFTDKVIFQNEDDRDLA 153
>gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584). This
protein is found in bacteria and eukaryotes. Proteins in
this family are typically between 943 to 1234 amino
acids in length. This family contains a P-loop motif
suggesting it is a nucleotide binding protein. It may be
involved in replication.
Length = 1198
Score = 29.3 bits (66), Expect = 5.3
Identities = 11/16 (68%), Positives = 14/16 (87%)
Query: 308 IVGDNGAGKTTLLKII 323
I G NGAGKTTLL+++
Sbjct: 22 ICGTNGAGKTTLLRLL 37
>gnl|CDD|223626 COG0552, FtsY, Signal recognition particle GTPase [Intracellular
trafficking and secretion].
Length = 340
Score = 28.8 bits (65), Expect = 5.6
Identities = 9/13 (69%), Positives = 9/13 (69%)
Query: 306 ICIVGDNGAGKTT 318
I VG NG GKTT
Sbjct: 142 ILFVGVNGVGKTT 154
>gnl|CDD|221983 pfam13207, AAA_17, AAA domain.
Length = 114
Score = 27.6 bits (61), Expect = 5.7
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 305 RICIVGDNGAGKTTLLKII 323
I I G G+GK+TL K +
Sbjct: 1 IILITGPPGSGKSTLAKKL 19
>gnl|CDD|223703 COG0630, VirB11, Type IV secretory pathway, VirB11 components, and
related ATPases involved in archaeal flagella
biosynthesis [Cell motility and secretion /
Intracellular trafficking and secretion].
Length = 312
Score = 28.9 bits (65), Expect = 5.7
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 306 ICIVGDNGAGKTTLLKIIMGIISP 329
I I G +GKTTLL ++ I P
Sbjct: 146 IIICGGTASGKTTLLNALLDFIPP 169
>gnl|CDD|99869 cd06116, CaCS_like, Chloroflexus aurantiacus (Ca) citrate synthase
(CS)_like. CS catalyzes the condensation of acetyl
coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate
and coenzyme A (CoA), the first step in the citric acid
cycle (TCA or Krebs cycle). This group is similar to
gram-negative Escherichia coli (Ec) CS (type II, gltA)
and Arabidopsis thaliana (Ath) peroxisomal (Per) CS.
However EcCS and AthPerCS are not found in this group.
The overall CS reaction is thought to proceed through
three partial reactions and involves both closed and
open conformational forms of the enzyme: a) the
carbanion or equivalent is generated from AcCoA by base
abstraction of a proton, b) the nucleophilic attack of
this carbanion on OAA to generate citryl-CoA, and c) the
hydrolysis of citryl-CoA to produce citrate and CoA.
There are two types of CSs: type I CS and type II CSs.
Type I CSs are found in eukarya, gram-positive bacteria,
archaea, and in some gram-negative bacteria and are
homodimers with both subunits participating in the
active site. Type II CSs are unique to gram-negative
bacteria and are homohexamers of identical subunits
(approximated as a trimer of dimers). Some type II CSs
are strongly and specifically inhibited by NADH through
an allosteric mechanism. C. aurantiacus is a
gram-negative thermophilic green gliding bacterium, its
CS belonging to this group may be a type I CS; it is not
inhibited by NADH or 2-oxoglutarate and is inhibited by
ATP. Both gram-positive and gram-negative bacteria are
found in this group.
Length = 384
Score = 29.0 bits (65), Expect = 5.7
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 204 EKLKNQQREIEAQRMHREHVQKFIDTFRYNANRASSVQSKIKQLERL-PELKPIEKE 259
E+L +I M E+++KF+D FRY+A+ + S + L PE K I E
Sbjct: 61 ERLAQWVYDITRHTMTHENLKKFMDGFRYDAHPMGILISSVAALSTFYPEAKNIGDE 117
>gnl|CDD|226425 COG3910, COG3910, Predicted ATPase [General function prediction
only].
Length = 233
Score = 28.6 bits (64), Expect = 5.9
Identities = 14/55 (25%), Positives = 22/55 (40%), Gaps = 4/55 (7%)
Query: 308 IVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQL 362
I G+NG+GK+TLL+ I +N K + H L + +
Sbjct: 42 ITGENGSGKSTLLEAIA--AGMGFNAAGGGKNFKGELDASH--SALVDYAKLHKR 92
>gnl|CDD|190521 pfam03096, Ndr, Ndr family. This family consists of proteins from
different gene families: Ndr1/RTP/Drg1, Ndr2, and Ndr3.
Their similarity was previously noted. The precise
molecular and cellular function of members of this
family is still unknown. Yet, they are known to be
involved in cellular differentiation events. The Ndr1
group was the first to be discovered. Their expression
is repressed by the proto-oncogenes N-myc and c-myc, and
in line with this observation, Ndr1 protein expression
is down-regulated in neoplastic cells, and is
reactivated when differentiation is induced by chemicals
such as retinoic acid. Ndr2 and Ndr3 expression is not
under the control of N-myc or c-myc. Ndr1 expression is
also activated by several chemicals: tunicamycin and
homocysteine induce Ndr1 in human umbilical endothelial
cells; nickel induces Ndr1 in several cell types.
Members of this family are found in wide variety of
multicellular eukaryotes, including an Ndr1 type protein
in Helianthus annuus (sunflower), known as Sf21.
Interestingly, the highest scoring matches in the noise
are all alpha/beta hydrolases pfam00561, suggesting that
this family may have an enzymatic function (Bateman A
pers. obs.).
Length = 284
Score = 28.9 bits (65), Expect = 5.9
Identities = 13/28 (46%), Positives = 20/28 (71%), Gaps = 4/28 (14%)
Query: 55 VVGDDTPAIDSVLECDTKRQNLLNREKT 82
VVGD +P +D+V+EC++K L+ KT
Sbjct: 226 VVGDKSPHVDAVVECNSK----LDPTKT 249
>gnl|CDD|149159 pfam07925, RdRP_5, Reovirus RNA-dependent RNA polymerase lambda 3.
The sequences in this family are similar to the reoviral
minor core protein lambda 3, which functions as a
RNA-dependent RNA polymerase within the protein capsid.
It is organised into 3 domains. N- and C-terminal domains
create a 'cage' that encloses a conserved central
catalytic domain within a hollow centre; this catalytic
domain is arranged to form 'fingers', 'palm' and 'thumb'
subdomains. Unlike other RNA polymerases, like HIV
reverse transcriptase and T7 RNA polymerase, lambda 3
protein binds template and substrate with only localised
rearrangements, and catalytic activity can occur with
little structural change. However, the structure of the
catalytic complex is similar to that of other polymerase
catalytic complexes with known structure.
Length = 1271
Score = 29.1 bits (65), Expect = 6.1
Identities = 20/67 (29%), Positives = 26/67 (38%), Gaps = 1/67 (1%)
Query: 350 VDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARM 409
V LD+ LL G E QL G G+S A G +S V AR+
Sbjct: 1124 VSGLDVEAVDATLLRLRILGADPEALTAQLLGIGMSDSEAHAIAGKISLADAQTVQLARV 1183
Query: 410 C-MAAPN 415
+A P+
Sbjct: 1184 VNLAVPS 1190
>gnl|CDD|185106 PRK15184, PRK15184, curli production assembly/transport protein
CsgG; Provisional.
Length = 277
Score = 28.5 bits (63), Expect = 6.3
Identities = 18/54 (33%), Positives = 23/54 (42%)
Query: 74 QNLLNREKTITQAINNGTADANMSTELTQVFAELEAIEADKAPARASVILAGLG 127
QNLLN K I A NGT N L + A +E ++V G+G
Sbjct: 102 QNLLNERKIIRAAQENGTVAINNRIPLQSLTAANIMVEGSIIGYESNVKSGGVG 155
>gnl|CDD|234857 PRK00886, PRK00886, 2-phosphosulfolactate phosphatase; Provisional.
Length = 240
Score = 28.3 bits (64), Expect = 6.4
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 8/45 (17%)
Query: 82 TITQAINNGTADANMSTELTQVFAEL-EAIEADKAPARASVILAG 125
TI A+NNG A+A F+++ EA+E K +L G
Sbjct: 33 TIATALNNG-AEA------VIPFSDVEEALEKAKKWPAEKRLLGG 70
>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of
small guanosine triphosphatases (GTPases). Ras-like
GTPase superfamily. The Ras-like superfamily of small
GTPases consists of several families with an extremely
high degree of structural and functional similarity. The
Ras superfamily is divided into at least four families
in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families.
This superfamily also includes proteins like the GTP
translation factors, Era-like GTPases, and G-alpha chain
of the heterotrimeric G proteins. Members of the Ras
superfamily regulate a wide variety of cellular
functions: the Ras family regulates gene expression, the
Rho family regulates cytoskeletal reorganization and
gene expression, the Rab and Sar1/Arf families regulate
vesicle trafficking, and the Ran family regulates
nucleocytoplasmic transport and microtubule
organization. The GTP translation factor family
regulates initiation, elongation, termination, and
release in translation, and the Era-like GTPase family
regulates cell division, sporulation, and DNA
replication. Members of the Ras superfamily are
identified by the GTP binding site, which is made up of
five characteristic sequence motifs, and the switch I
and switch II regions.
Length = 161
Score = 28.2 bits (63), Expect = 6.5
Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 5/39 (12%)
Query: 307 CIVGDNGAGKTTLLKIIMG----IISPTAGTRTVHRNLK 341
+VG G GK++LL ++G +S GT T ++
Sbjct: 1 VVVGRGGVGKSSLLNALLGGEVGEVSDVPGT-TRDPDVY 38
>gnl|CDD|206741 cd09914, RocCOR, Ras of complex proteins (Roc) C-terminal of Roc
(COR) domain family. RocCOR (or Roco) protein family is
characterized by a superdomain containing a Ras-like
GTPase domain, called Roc (Ras of complex proteins), and
a characteristic second domain called COR (C-terminal of
Roc). A kinase domain and diverse regulatory domains are
also often found in Roco proteins. Their functions are
diverse; in Dictyostelium discoideum, which encodes 11
Roco proteins, they are involved in cell division,
chemotaxis and development, while in human, where 4 Roco
proteins (LRRK1, LRRK2, DAPK1, and MFHAS1) are encoded,
these proteins are involved in epilepsy and cancer.
Mutations in LRRK2 (leucine-rich repeat kinase 2) are
known to cause familial Parkinson's disease.
Length = 161
Score = 28.1 bits (63), Expect = 6.7
Identities = 10/23 (43%), Positives = 17/23 (73%)
Query: 303 ESRICIVGDNGAGKTTLLKIIMG 325
E+++ +VG G GKT+L K ++G
Sbjct: 1 EAKLMLVGQGGVGKTSLCKQLIG 23
>gnl|CDD|221513 pfam12296, HsbA, Hydrophobic surface binding protein A. This
protein is found in eukaryotes. Proteins in this family
are typically between 171 to 275 amino acids in length.
Although the HsbA amino acid sequence suggests that HsbA
may be hydrophilic, HsbA adsorbed to hydrophobic PBSA
(Polybutylene succinate-co-adipate) surfaces in the
presence of NaCl or CaCl2. When HsbA was adsorbed on the
hydrophobic PBSA surfaces, it promoted PBSA degradation
via the CutL1 polyesterase. CutL1 interacts directly
with HsbA attached to the hydrophobic QCM electrode
surface. These results suggest that when HsbA is
adsorbed onto the PBSA surface, it recruits CutL1, and
that when CutL1 is accumulated on the PBSA surface, it
stimulates PBSA degradation.
Length = 124
Score = 27.6 bits (62), Expect = 6.8
Identities = 20/70 (28%), Positives = 27/70 (38%), Gaps = 20/70 (28%)
Query: 76 LLNREKTITQAINNGTADANMSTELT----------------QVFAELEAIEADKAPARA 119
+L+ T+ AI T DA S L+ Q+ L+A+ A K A
Sbjct: 37 ILSASTTLISAIKQATTDAQASAPLSDEESLALLAAVQTLTPQILDALDALIAKKPLFDA 96
Query: 120 SVILAGLGFT 129
AGLG T
Sbjct: 97 ----AGLGST 102
>gnl|CDD|233193 TIGR00929, VirB4_CagE, type IV secretion/conjugal transfer ATPase,
VirB4 family. Type IV secretion systems are found in
Gram-negative pathogens. They export proteins, DNA, or
complexes in different systems and are related to
plasmid conjugation systems. This model represents
related ATPases that include VirB4 in Agrobacterium
tumefaciens (DNA export) CagE in Helicobacter pylori
(protein export) and plasmid TraB (conjugation).
Length = 785
Score = 28.8 bits (65), Expect = 6.9
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 307 CIVGDNGAGKTTLLKIIM 324
I G G+GKTTLL ++
Sbjct: 438 LIFGPTGSGKTTLLNFLL 455
>gnl|CDD|99707 cd00009, AAA, The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC, RecA-like,
VirD4-like, PilT-like, and SF1/2 helicases. Members of
the AAA+ ATPases function as molecular chaperons, ATPase
subunits of proteases, helicases, or nucleic-acid
stimulated ATPases. The AAA+ proteins contain several
distinct features in addition to the conserved
alpha-beta-alpha core domain structure and the Walker A
and B motifs of the P-loop NTPases.
Length = 151
Score = 27.9 bits (62), Expect = 7.1
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 306 ICIVGDNGAGKTTLLKII 323
+ + G G GKTTL + I
Sbjct: 22 LLLYGPPGTGKTTLARAI 39
>gnl|CDD|211422 cd11609, MCT1_N, N-terminal domain of multiple copies T cell
malignancies 1 and related proteins. This N-terminal
domain of MCT-1 (multiple copies T cell malignancies 1),
also known as MCTS-1 (malignant T cell-amplified
sequence 1), co-occurs with a PUA domain. MCT-1,
together with DENR (density regulated protein), has been
shown to have similar function as eIF2D translation
initiation factor (also known as ligatin), which is
involved in the recruitment and delivery of
aminoacyl-tRNAs to the P-site of the eukaryotic ribosome
in a GTP-independent manner.
Length = 77
Score = 26.7 bits (60), Expect = 7.2
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 8/39 (20%)
Query: 238 SSVQSKIKQ--LERLPELKP-IE-----KEVEVVLKFPD 268
SSVQ I+ LE+ P L+P I+ KE V++K D
Sbjct: 16 SSVQRGIRAKLLEQYPLLEPYIDEILPKKEPLVLVKCHD 54
>gnl|CDD|223993 COG1066, Sms, Predicted ATP-dependent serine protease
[Posttranslational modification, protein turnover,
chaperones].
Length = 456
Score = 28.7 bits (65), Expect = 7.2
Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
Query: 275 PILQLSEVNFEYVP-GKPILTNVCLGATLE-SRICIVGDNGAGKTTLL 320
+ + + G L V G + S I I GD G GK+TLL
Sbjct: 63 KLSDIELEEEPRISTGIEELDRVLGGGLVPGSVILIGGDPGIGKSTLL 110
>gnl|CDD|223256 COG0178, UvrA, Excinuclease ATPase subunit [DNA replication,
recombination, and repair].
Length = 935
Score = 28.7 bits (65), Expect = 7.5
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Query: 395 SLSGGQKSRVAFARMCMAAPN---FLVLDEPTNHLDIETIEALGKAINK 440
+LSGG+ RV A+ +LDEPT L + I+ L + +++
Sbjct: 822 TLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHR 870
>gnl|CDD|224292 COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General
function prediction only].
Length = 398
Score = 28.5 bits (64), Expect = 7.8
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 306 ICIVGDNGAGKTTLLKII 323
I I+G GKTTLLK++
Sbjct: 40 ILILGPRQVGKTTLLKLL 57
>gnl|CDD|206724 cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl10) GTPases.
Arl10-like subfamily. Arl9/Arl10 was identified from a
human cancer-derived EST dataset. No functional
information about the subfamily is available at the
current time, but crystal structures of human Arl10b and
Arl10c have been solved.
Length = 159
Score = 27.7 bits (62), Expect = 8.1
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 306 ICIVGDNGAGKTTLLKIIMG 325
I +VG +GKTTL+ +I
Sbjct: 2 ITLVGLQNSGKTTLVNVIAS 21
>gnl|CDD|225982 COG3451, VirB4, Type IV secretory pathway, VirB4 components
[Intracellular trafficking and secretion].
Length = 796
Score = 28.5 bits (64), Expect = 8.3
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 307 CIVGDNGAGKTTLLKIIM 324
I+G GAGKT LL ++
Sbjct: 440 LIIGPTGAGKTVLLSFLL 457
>gnl|CDD|165788 PLN00223, PLN00223, ADP-ribosylation factor; Provisional.
Length = 181
Score = 28.0 bits (62), Expect = 8.4
Identities = 21/47 (44%), Positives = 29/47 (61%), Gaps = 7/47 (14%)
Query: 303 ESRICIVGDNGAGKTTLL-KIIMGIIS---PTAG--TRTV-HRNLKF 342
E RI +VG + AGKTT+L K+ +G I PT G TV ++N+ F
Sbjct: 17 EMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISF 63
>gnl|CDD|235164 PRK03824, hypA, hydrogenase nickel incorporation protein;
Provisional.
Length = 135
Score = 27.4 bits (61), Expect = 8.4
Identities = 18/45 (40%), Positives = 29/45 (64%), Gaps = 4/45 (8%)
Query: 242 SKIKQLE-RLPELKPIEKEVEVVLKFPDTELLSPPILQLSEVNFE 285
SK+K L+ L EL+ ++KE+ ++F ELL IL+ +E+ FE
Sbjct: 24 SKVKALKVVLGELQDVDKEI---VEFALNELLKGTILEGAEIIFE 65
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional.
Length = 880
Score = 28.5 bits (64), Expect = 8.4
Identities = 15/79 (18%), Positives = 38/79 (48%), Gaps = 8/79 (10%)
Query: 192 RGNYEAFDKIKTEKLKNQQREIEAQRMHREHVQKFIDTFRYNANRASSVQSKIKQLE--- 248
+ +++K E+++ ++E+E+ + +++ I R ++ +I++LE
Sbjct: 227 EKEVKELEELK-EEIEELEKELESLEGSKRKLEEKIRELE---ERIEELKKEIEELEEKV 282
Query: 249 -RLPELKPIEKEVEVVLKF 266
L ELK +E + +F
Sbjct: 283 KELKELKEKAEEYIKLSEF 301
>gnl|CDD|148916 pfam07564, DUF1542, Domain of Unknown Function (DUF1542). This
domain is found in several cell surface proteins. Some
are involved in antibiotic resistance and/or cellular
adhesion.
Length = 70
Score = 26.0 bits (58), Expect = 8.7
Identities = 12/49 (24%), Positives = 18/49 (36%), Gaps = 4/49 (8%)
Query: 75 NLLNREKT-ITQAINNGTADANMSTELTQVFAELEAIEAD---KAPARA 119
N +N K Q IN T + + + AI+ K A+A
Sbjct: 22 NKVNAAKNKAIQNINQATTNDEVDQAKDNGINAINAIQPATTKKPDAKA 70
>gnl|CDD|180854 PRK07121, PRK07121, hypothetical protein; Validated.
Length = 492
Score = 28.3 bits (64), Expect = 8.8
Identities = 11/31 (35%), Positives = 14/31 (45%), Gaps = 2/31 (6%)
Query: 117 ARASVILA--GLGFTPEMQKRATKHFSGGWR 145
AR V+LA G EM R ++GG
Sbjct: 227 ARKGVVLAAGGFAMNREMVARYAPAYAGGLP 257
>gnl|CDD|213206 cd03239, ABC_SMC_head, The SMC head domain belongs to the
ATP-binding cassette superfamily. The structural
maintenance of chromosomes (SMC) proteins are essential
for successful chromosome transmission during
replication and segregation of the genome in all
organisms. SMCs are generally present as single proteins
in bacteria, and as at least six distinct proteins in
eukaryotes. The proteins range in size from
approximately 110 to 170 kDa, and each has five distinct
domains: amino- and carboxy-terminal globular domains,
which contain sequences characteristic of ATPases, two
coiled-coil regions separating the terminal domains ,
and a central flexible hinge. SMC proteins function
together with other proteins in a range of chromosomal
transactions, including chromosome condensation,
sister-chromatid cohesion, recombination, DNA repair,
and epigenetic silencing of gene expression.
Length = 178
Score = 27.7 bits (62), Expect = 9.0
Identities = 34/136 (25%), Positives = 45/136 (33%), Gaps = 24/136 (17%)
Query: 307 CIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEAA 366
IVG NG+GK+ I+ I G + F + +N V E
Sbjct: 26 AIVGPNGSGKSN----IVDAICFVLGGKAAKLRRGSLLFLAGGGVKAGINSASV---EIT 78
Query: 367 FPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVA----FARMCMAAPNFLVLDEP 422
F + L G + LSGG+KS A FA + F VLDE
Sbjct: 79 F------DKSYFLVLQGKVEQI-------LSGGEKSLSALALIFALQEIKPSPFYVLDEI 125
Query: 423 TNHLDIETIEALGKAI 438
LD + I
Sbjct: 126 DAALDPTNRRRVSDMI 141
>gnl|CDD|233062 TIGR00630, uvra, excinuclease ABC, A subunit. This family is a
member of the ABC transporter superfamily of proteins of
which all members for which functions are known except
the UvrA proteins are involved in the transport of
material through membranes. UvrA orthologs are involved
in the recognition of DNA damage as a step in nucleotide
excision repair. This family is based on the
phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis,
Stanford University) [DNA metabolism, DNA replication,
recombination, and repair].
Length = 925
Score = 28.4 bits (64), Expect = 9.2
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Query: 395 SLSGGQKSRVAFARMCMA---APNFLVLDEPTNHLDIETIEAL 434
+LSGG+ R+ A+ +LDEPT L + I+ L
Sbjct: 829 TLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKL 871
>gnl|CDD|115072 pfam06391, MAT1, CDK-activating kinase assembly factor MAT1. MAT1
is an assembly/targeting factor for cyclin-dependent
kinase-activating kinase (CAK), which interacts with the
transcription factor TFIIH. The domain found to the
N-terminal side of this domain is a C3HC4 RING finger.
Length = 200
Score = 27.8 bits (62), Expect = 9.3
Identities = 18/102 (17%), Positives = 40/102 (39%), Gaps = 12/102 (11%)
Query: 199 DKIKTEKLKNQQREIEAQRMHREH-------VQKFIDTFRYNANRAS----SVQSKIKQL 247
++ EK +++ + Q+ +E Q+ ID + A+ + + KQL
Sbjct: 97 QALEEEKEMKEEKRLHLQKEEQEQKMAKEKDKQEIIDELETSNLPANVIIAQHKKQSKQL 156
Query: 248 ERLPE-LKPIEKEVEVVLKFPDTELLSPPILQLSEVNFEYVP 288
E E L+ ++ + P++++ E + Y P
Sbjct: 157 ESQVEKLERKKRVTFSTGIKKGEHISFVPVIKVEEALYPYQP 198
>gnl|CDD|173172 PRK14709, PRK14709, hypothetical protein; Provisional.
Length = 469
Score = 28.1 bits (63), Expect = 9.6
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 297 CL-GATLESRICIV-GDNGAGKTTLLKIIMGIISPTAGTRTV 336
CL G T E + V G G GK+ L ++ GI+ A T +
Sbjct: 197 CLTGDTREHALVFVFGGGGNGKSVFLNVLAGILGDYATTAAM 238
>gnl|CDD|222878 PHA02562, 46, endonuclease subunit; Provisional.
Length = 562
Score = 28.4 bits (64), Expect = 9.8
Identities = 9/13 (69%), Positives = 11/13 (84%)
Query: 308 IVGDNGAGKTTLL 320
I G NGAGK+T+L
Sbjct: 32 ITGKNGAGKSTML 44
>gnl|CDD|214699 smart00503, SynN, Syntaxin N-terminal domain. Three-helix domain
that (in Sso1p) slows the rate of its reaction with the
SNAP-25 homologue Sec9p.
Length = 117
Score = 26.9 bits (60), Expect = 10.0
Identities = 14/68 (20%), Positives = 26/68 (38%), Gaps = 7/68 (10%)
Query: 188 IDTYRGNYEAFDKIKTEKLKNQQREIEAQRMHREHVQKFIDTFRYNANRASSVQSKIKQL 247
I N K E+L + R E +++ ID + A +++K+K+L
Sbjct: 17 IQKISQNVAELQK-LHEELLTPPDADKELR---EKLERLIDDIKRLAK---EIRAKLKEL 69
Query: 248 ERLPELKP 255
E+
Sbjct: 70 EKENLENR 77
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.135 0.393
Gapped
Lambda K H
0.267 0.0889 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 22,484,223
Number of extensions: 2212542
Number of successful extensions: 3539
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3432
Number of HSP's successfully gapped: 730
Length of query: 443
Length of database: 10,937,602
Length adjustment: 100
Effective length of query: 343
Effective length of database: 6,502,202
Effective search space: 2230255286
Effective search space used: 2230255286
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (27.0 bits)