RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy208
(443 letters)
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein
biosynthesis, nucleotide-binding, phosphorylation, RNA-
binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces
cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Length = 986
Score = 225 bits (574), Expect = 2e-65
Identities = 73/404 (18%), Positives = 131/404 (32%), Gaps = 109/404 (26%)
Query: 26 TLHLHLEGGMVSGQLRIPSHISVLHVEQEVVGDDTPAIDSVLECDTKRQNLLNREKTITQ 85
TL + G V ++VE ++ G + + ++
Sbjct: 476 TLMRAIANGQV-DGFPTQEECRTVYVEHDIDGTHS-------------------DTSVLD 515
Query: 86 AINNGTADANMSTELTQVFAELEAIEADKAPARASVILAGLGFTPEMQKRATKHFSGGWR 145
+ L GFT EM SGGW+
Sbjct: 516 FVFES---------------------GVGTKEAIKDKLIEFGFTDEMIAMPISALSGGWK 554
Query: 146 K--------------------------MAIIWLENYLQNWPTTLLVVSHDRHFLDSVPTD 179
+ + WL NYL T + +SHD FLD+V
Sbjct: 555 MKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTCGITSITISHDSVFLDNVCEY 614
Query: 180 IFHLHSQRIDTYRGNYEAFDKIKTEKLKNQQREIEAQRMHREHVQKFIDTFRYNANRASS 239
I + ++ Y+GN+ F K + E ++
Sbjct: 615 IINYEGLKLRKYKGNFTEF-----VKKCPAAKAYEELS------NTDLEFKFPEPGYLEG 663
Query: 240 VQSKIKQLERLPELKPIEKEVEVVLKFPDTELLSPPILQLSEVNFEYVPGKPILTNVCLG 299
V++K K + ++ ++ ++P T KP +T++
Sbjct: 664 VKTKQKAIVKVTNMEF---------QYPGTS-------------------KPQITDINFQ 695
Query: 300 ATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLR- 358
+L SRI ++G NGAGK+TL+ ++ G + PT+G H N + Y QH ++ +L
Sbjct: 696 CSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHENCRIAYIKQHAFAHIESHLDK 755
Query: 359 -CVQLLEAAFP-GKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQ 400
+ ++ F G+ +E R + A+ + + G
Sbjct: 756 TPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTP 799
Score = 123 bits (309), Expect = 3e-30
Identities = 40/211 (18%), Positives = 73/211 (34%), Gaps = 16/211 (7%)
Query: 241 QSKIKQLERLPELKPIEKEVEVVLKFPDTELLSPPILQLSEVNFEYVPGKPILTNVCLGA 300
Q +E + P E D E + Q++E + +
Sbjct: 743 QHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINE------NDAEAMNKIFKIE 796
Query: 301 TLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTV---------HRNLKFGYFSQHHVD 351
RI + K T ++ G ++ + + G + H
Sbjct: 797 GTPRRIAGIHSRRKFKNTYEYECSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSK 856
Query: 352 QLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQ-FVGSLSGGQKSRVAFARMC 410
+ L F ++E G+ ++ + LSGGQK ++ A
Sbjct: 857 MVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIVSHSRIRGLSGGQKVKLVLAAGT 916
Query: 411 MAAPNFLVLDEPTNHLDIETIEALGKAINKY 441
P+ +VLDEPTN+LD +++ AL KA+ ++
Sbjct: 917 WQRPHLIVLDEPTNYLDRDSLGALSKALKEF 947
Score = 121 bits (304), Expect = 1e-29
Identities = 42/157 (26%), Positives = 68/157 (43%), Gaps = 13/157 (8%)
Query: 289 GKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMG----IISPTAGTRTVHRNLKFGY 344
K +L L R I G NG GK+TL++ I RTV+
Sbjct: 447 AKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVDGFPTQEECRTVYV------ 500
Query: 345 FSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRV 404
+H +D + + + + +E + +L FG + ++ + +LSGG K ++
Sbjct: 501 --EHDIDGTHSDTSVLDFVFES-GVGTKEAIKDKLIEFGFTDEMIAMPISALSGGWKMKL 557
Query: 405 AFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441
A AR + + L+LDEPTNHLD + L +N
Sbjct: 558 ALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTC 594
Score = 92.4 bits (229), Expect = 4e-20
Identities = 15/128 (11%), Positives = 40/128 (31%), Gaps = 31/128 (24%)
Query: 99 ELTQVFAELEAIEA----DKAPARASVILAGLGFTPE-MQKRATKHFSGGWRK------- 146
++ EA+ + + LG PE + + SGG +
Sbjct: 856 KMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIVSHSRIRGLSGGQKVKLVLAAG 915
Query: 147 -------------------MAIIWLENYLQNWPTTLLVVSHDRHFLDSVPTDIFHLHSQR 187
++ L L+ + +++++H F ++ +++ + R
Sbjct: 916 TWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGGVIIITHSAEFTKNLTEEVWAVKDGR 975
Query: 188 IDTYRGNY 195
+ N+
Sbjct: 976 MTPSGHNW 983
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur
cluster, adenosine diphosphate, nucleotide-binding; HET:
ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Length = 607
Score = 135 bits (343), Expect = 6e-35
Identities = 69/297 (23%), Positives = 118/297 (39%), Gaps = 46/297 (15%)
Query: 147 MAIIWLENYLQNWPTTLLVVSHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAFDKIKTEKL 206
+ + + L N +LVV HD LD + +D+ H+ + G Y F K K
Sbjct: 265 LKVARVIRRLANEGKAVLVVEHDLAVLDYL-SDVIHV----VYGEPGVYGIFSKPKGT-- 317
Query: 207 KNQQREIEAQRMHREHVQKFIDTFRYNANRASSVQSKIKQLERLPELKPIEKEVEVVLKF 266
R + +F+ + + +V+ + ++ + ++ E E ++++
Sbjct: 318 -------------RNGINEFLQGYL----KDENVRFRPYEIRFTKLSERVDVERETLVEY 360
Query: 267 PDTELLSPPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGI 326
P G L I IVG NG GKTT +K++ G+
Sbjct: 361 P---------------RLVKDYGSFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGV 405
Query: 327 ISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLL-EAAFPGKPQEEYRRQ-LGGFGV 384
PT G V +L Y Q+ + + +LL + Y+ + L G+
Sbjct: 406 EEPTEGK--VEWDLTVAYKPQY--IKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGI 461
Query: 385 SGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441
DL + V LSGG+ RVA A + + +LDEP+ +LD+E A+ +AI
Sbjct: 462 I-DLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHL 517
Score = 96.2 bits (240), Expect = 2e-21
Identities = 40/157 (25%), Positives = 63/157 (40%), Gaps = 23/157 (14%)
Query: 305 RICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRC----- 359
+ IVG NG GKTT +KI+ G + P + F + + L+
Sbjct: 119 VVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRP 178
Query: 360 ------VQLLEAAFPGK-----PQEEYRRQLGGFGVSGDLAL-----QFVGSLSGGQKSR 403
V LL A GK + + + V +L L + + LSGG+ R
Sbjct: 179 VVKPQYVDLLPKAVKGKVRELLKKVDEVGKF--EEVVKELELENVLDRELHQLSGGELQR 236
Query: 404 VAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINK 440
VA A + +F DEP+++LDI + + I +
Sbjct: 237 VAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRR 273
Score = 35.4 bits (82), Expect = 0.042
Identities = 16/112 (14%), Positives = 37/112 (33%), Gaps = 32/112 (28%)
Query: 102 QVFAELEAIEADKAPARASVILAGLGFTPEMQKRATKHFSGG------------------ 143
++ +++++ + + + + +L LG ++ R + SGG
Sbjct: 436 ELLSKIDSSKLN-SNFYKTELLKPLGI-IDLYDRNVEDLSGGELQRVAIAATLLRDADIY 493
Query: 144 ------------WRKMAIIWLENYLQNWPTTLLVVSHDRHFLDSVPTDIFHL 183
R + + ++ T LVV HD +D V +
Sbjct: 494 LLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVF 545
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette,
hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Length = 279
Score = 111 bits (281), Expect = 3e-28
Identities = 53/185 (28%), Positives = 79/185 (42%), Gaps = 25/185 (13%)
Query: 273 SPPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAG 332
S ++QL ++ GK IL + + + G NGAGKTTLL I+ T+G
Sbjct: 18 SHMLIQLDQIGRMK-QGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSG 76
Query: 333 TRTVH-----------RNLK--FGYFSQHHVDQLDMNLRCVQL-LEAAFP--GKPQEEYR 376
T + ++ G+ S +++ R + + + AF G Q+
Sbjct: 77 TVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDD 136
Query: 377 RQ-------LGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIE 429
L G+S A Q++G LS G+K RV AR M P L+LDEP LD
Sbjct: 137 EIRNEAHQLLKLVGMS-AKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFI 195
Query: 430 TIEAL 434
E+L
Sbjct: 196 ARESL 200
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase,
translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Length = 538
Score = 115 bits (290), Expect = 5e-28
Identities = 63/299 (21%), Positives = 103/299 (34%), Gaps = 45/299 (15%)
Query: 148 AIIWLENYLQNW--PTTLLVVSHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAFDKIKTEK 205
+ + ++ ++VV HD LD + TD+ H+ I Y K
Sbjct: 173 ERMNMAKAIRELLKNKYVIVVDHDLIVLDYL-TDLIHI----IYGESSVYGRVSKSYAA- 226
Query: 206 LKNQQREIEAQRMHREHVQKFIDTFRYNANRASSVQSKIKQLERLPELKPIEKEVEVVLK 265
R + F+ + N R E+K + KEV
Sbjct: 227 --------------RVGINNFLKGYLPAENMKI----------RPDEIKFMLKEV----- 257
Query: 266 FPDTELLSPPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMG 325
D +L ++ G L A I I+G NG GKTT +I++G
Sbjct: 258 -SDLDLSKDLKTKMKWTKIIKKLGDFQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVG 316
Query: 326 IISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLE--AAFPGKPQEEYRRQ-LGGF 382
I+ G+ T Y Q D ++ Q LE + + +
Sbjct: 317 EITADEGSVTPE-KQILSYKPQRIFPNYDGTVQ--QYLENASKDALSTSSWFFEEVTKRL 373
Query: 383 GVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441
+ L V LSGG+ ++ A + VLD+P+++LD+E + KAI +
Sbjct: 374 NLH-RLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRV 431
Score = 80.5 bits (199), Expect = 2e-16
Identities = 35/157 (22%), Positives = 64/157 (40%), Gaps = 23/157 (14%)
Query: 306 ICIVGDNGAGKTTLLKIIMGIISPTAGTRTV----HRNLK-------FGYFSQ------- 347
+ ++G NG GKTT+LKI+ G I P G LK + YF +
Sbjct: 28 LGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELK 87
Query: 348 --HHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQ--LGGFGVSGDLALQFVGSLSGGQKSR 403
H + ++ + ++ K E ++ ++ L + LSGG R
Sbjct: 88 IVHKIQYVEYASKFLKGTVNEILTKIDERGKKDEVKELLNMTN-LWNKDANILSGGGLQR 146
Query: 404 VAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINK 440
+ A + + + D+P+++LD+ + KAI +
Sbjct: 147 LLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRE 183
Score = 31.1 bits (71), Expect = 0.74
Identities = 7/65 (10%), Positives = 17/65 (26%), Gaps = 3/65 (4%)
Query: 147 MAIIW--LENYLQNWPTTLLVVSHDRHFLDSVPTDIFHLHSQRI-DTYRGNYEAFDKIKT 203
I+ ++ + ++ HD D + I + +
Sbjct: 421 RYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFKGEPEKAGLATSPVTLKTGMN 480
Query: 204 EKLKN 208
E L+
Sbjct: 481 EFLRE 485
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative
iron chelatin ABC transporter, nucleotide binding
domain; 2.40A {Haemophilus influenzae}
Length = 253
Score = 104 bits (261), Expect = 1e-25
Identities = 42/164 (25%), Positives = 72/164 (43%), Gaps = 11/164 (6%)
Query: 275 PILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTR 334
L + + F Y + + + ++G NG GK+TLL +++GI P G
Sbjct: 3 KALSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKI 62
Query: 335 TVHRNLKFGYFSQHHVDQ-----LDMNL--RCVQLLEAAFPGKPQEEY-RRQLGGFGVSG 386
V++++ G+ Q LD+ L R + A P + + L ++
Sbjct: 63 EVYQSI--GFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLT- 119
Query: 387 DLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIET 430
LA + SLSGGQ+ + AR + ++LDEPT+ LD+
Sbjct: 120 HLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLAN 163
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis,
hydrolyase/translation complex; HET: ADP; 1.90A
{Pyrococcus furiosus}
Length = 538
Score = 104 bits (261), Expect = 3e-24
Identities = 69/297 (23%), Positives = 113/297 (38%), Gaps = 46/297 (15%)
Query: 147 MAIIWLENYLQNWPTTLLVVSHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAFDKIKTEKL 206
+ L ++LVV HD LD + +DI H+ + G Y F + K
Sbjct: 195 LNAARAIRRLSEEGKSVLVVEHDLAVLDYL-SDIIHV----VYGEPGVYGIFSQPK---- 245
Query: 207 KNQQREIEAQRMHREHVQKFIDTFRYNANRASSVQSKIKQLERLPELKPIEKEVEVVLKF 266
+ I+ F + +V+ + +++ + +E E E ++ +
Sbjct: 246 ---------------GTRNGINEFLRGYLKDENVRFRPYEIKFTKTGERVEIERETLVTY 290
Query: 267 PDTELLSPPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGI 326
P G L I IVG NG GKTT +K++ G+
Sbjct: 291 P---------------RLVKDYGSFRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGV 335
Query: 327 ISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQ--LGGFGV 384
PT G + +L Y Q+ + D +LL K + + L G+
Sbjct: 336 EEPTEG--KIEWDLTVAYKPQYI--KADYEGTVYELLSKIDASKLNSNFYKTELLKPLGI 391
Query: 385 SGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441
DL + V LSGG+ RVA A + + +LDEP+ +LD+E A+ +AI
Sbjct: 392 I-DLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHL 447
Score = 76.2 bits (188), Expect = 4e-15
Identities = 37/153 (24%), Positives = 65/153 (42%), Gaps = 21/153 (13%)
Query: 306 ICIVGDNGAGKTTLLKIIMGIISP--TAGTRTVHRNLKF-------GYFSQHHVDQLDMN 356
+ IVG NG GK+T +KI+ G + P + ++ YF + ++
Sbjct: 50 VGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPV 109
Query: 357 LRC--VQLLEAAFPGKPQEEYRRQ---------LGGFGVSGDLALQFVGSLSGGQKSRVA 405
++ V L+ A GK E ++ + + ++ + + LSGG+ RVA
Sbjct: 110 VKPQYVDLIPKAVKGKVIELLKKADETGKLEEVVKALELE-NVLEREIQHLSGGELQRVA 168
Query: 406 FARMCMAAPNFLVLDEPTNHLDIETIEALGKAI 438
A + F DEP+++LDI +AI
Sbjct: 169 IAAALLRNATFYFFDEPSSYLDIRQRLNAARAI 201
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET:
ATP; NMR {Saccharomyces cerevisiae}
Length = 608
Score = 97.8 bits (244), Expect = 4e-22
Identities = 39/199 (19%), Positives = 68/199 (34%), Gaps = 11/199 (5%)
Query: 247 LERLPELKPIEKEVEVVLKFPDTELLSPPILQLSEVNFEYVPGKPILTNVCLGATLESRI 306
+ E + + S + + G +L + +
Sbjct: 322 IPAENLRFRTEALQFRIADATEDLQNDSASRAFSYPSLKKTQGDFVLNVEEGEFSDSEIL 381
Query: 307 CIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCV--QLLE 364
++G+NG GKTTL+K++ G + P G L Q + QL
Sbjct: 382 VMMGENGTGKTTLIKLLAGALKPDEGQ--DIPKLNVSMKPQK----IAPKFPGTVRQLFF 435
Query: 365 AAFPGKPQEEYRRQ--LGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEP 422
G+ + + + D+ Q V LSGG+ RVA + ++DEP
Sbjct: 436 KKIRGQFLNPQFQTDVVKPLRID-DIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEP 494
Query: 423 TNHLDIETIEALGKAINKY 441
+ +LD E K I ++
Sbjct: 495 SAYLDSEQRIICSKVIRRF 513
Score = 85.5 bits (212), Expect = 6e-18
Identities = 32/163 (19%), Positives = 56/163 (34%), Gaps = 30/163 (18%)
Query: 306 ICIVGDNGAGKTTLLKIIMGIISPTAGT---------------RTVHRNLKFGYFSQ--- 347
+ +VG NG GK+T LKI+ G P G + +N
Sbjct: 106 LGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIK 165
Query: 348 -----HHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLAL-----QFVGSLS 397
+VD + ++ E+ + L L + + LS
Sbjct: 166 AIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDV--KRYIKILQLENVLKRDIEKLS 223
Query: 398 GGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINK 440
GG+ R A C+ + + DEP+++LD++ + I
Sbjct: 224 GGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRS 266
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell
membrane, cobalt transport, hydrolase, ION transport;
2.30A {Clostridium perfringens atcc 13124}
Length = 275
Score = 91.8 bits (229), Expect = 3e-21
Identities = 50/208 (24%), Positives = 80/208 (38%), Gaps = 56/208 (26%)
Query: 273 SPPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAG 332
IL++ E+N+ Y G L + + I+G NG GK+TL + GI+ P++G
Sbjct: 4 EDYILKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSG 63
Query: 333 TRTVHRNLKFGYFSQHHVDQLDMNLRCV-------------QLLEA------AF-P---G 369
+D + + QL A +F
Sbjct: 64 RILFD---------NKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMK 114
Query: 370 KPQEEYRRQLGGFGVSGDLALQFVG----------SLSGGQKSRVAFARMCMAAPNFLVL 419
P++E R+++ D AL+ G LS GQK RVA A + + P L+L
Sbjct: 115 LPEDEIRKRV-------DNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLIL 167
Query: 420 DEPTNHLD-------IETIEALGKAINK 440
DEPT LD ++ + + K +
Sbjct: 168 DEPTAGLDPMGVSEIMKLLVEMQKELGI 195
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane,
membrane, transmembrane, transport, ATP- binding,
hydrolase, nucleotide-binding, periplasm; HET: 1PE;
2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Length = 249
Score = 90.3 bits (225), Expect = 7e-21
Identities = 40/173 (23%), Positives = 58/173 (33%), Gaps = 26/173 (15%)
Query: 274 PPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGT 333
++QL +V L + + +VG NGAGK+TLL + G+ G+
Sbjct: 2 SIVMQLQDVA-----ESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGS 55
Query: 334 RTVH-RNL----------KFGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGF 382
+ L Y SQ + L E G
Sbjct: 56 IQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTL-HQHDKTRTELLNDVAGAL 114
Query: 383 GVSGDLALQFVGSLSGGQKSRVAFARMC-------MAAPNFLVLDEPTNHLDI 428
+ D + LSGG+ RV A + A L+LDEP N LD+
Sbjct: 115 ALD-DKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDV 166
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt
transport, TM02 hydrolase, inner membrane, membrane,
nucleotide-binding; 2.30A {Thermotoga maritima}
Length = 266
Score = 81.5 bits (202), Expect = 1e-17
Identities = 46/190 (24%), Positives = 71/190 (37%), Gaps = 61/190 (32%)
Query: 277 LQLSEVNFEYVPGKPI----LTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAG 332
+++ V+ + G P+ L NV L + + G+ G+GK+TLL+I+ G+I PT+G
Sbjct: 3 IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSG 62
Query: 333 TRTVHRNLKFGYFSQHHVDQLDMNLRCV-------------QLLEA------AF-P---G 369
D + Q AF
Sbjct: 63 DVLY--------------DGERKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFY 108
Query: 370 KPQEEYRRQLGGFGVSGDLALQFVG------------SLSGGQKSRVAFARMCMAAPNFL 417
++ V A++FVG LSGG+K RVA A + + P+ L
Sbjct: 109 PDRDPVPL------V--KKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDIL 160
Query: 418 VLDEPTNHLD 427
+LDEP LD
Sbjct: 161 ILDEPLVGLD 170
>1sgw_A Putative ABC transporter; structural genomics, P protein structure
initiative, southeast collaboratory for S genomics,
secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Length = 214
Score = 79.1 bits (196), Expect = 3e-17
Identities = 33/142 (23%), Positives = 53/142 (37%), Gaps = 14/142 (9%)
Query: 310 GDNGAGKTTLLKIIMGIISPTAGTRTVH-RNL-----KFGYFSQHHVDQLDMNLRCVQLL 363
G NG GKTTLLK I + P G + + K + + + + L
Sbjct: 42 GPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEE--IIVPRKISVEDYL 99
Query: 364 E--AAFPGKPQEEYR--RQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVL 419
+ A+ G + L V + +G LS G RV A + VL
Sbjct: 100 KAVASLYGVKVNKNEIMDALESVEVLD--LKKKLGELSQGTIRRVQLASTLLVNAEIYVL 157
Query: 420 DEPTNHLDIETIEALGKAINKY 441
D+P +D ++ + K+I +
Sbjct: 158 DDPVVAIDEDSKHKVLKSILEI 179
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural
genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Length = 263
Score = 78.5 bits (194), Expect = 1e-16
Identities = 35/172 (20%), Positives = 65/172 (37%), Gaps = 32/172 (18%)
Query: 276 ILQLSEVNFEYVPGKPILTNVCLGATLE---SRICIVGDNGAGKTTLLKIIMGIISPTAG 332
++QL V GK LE ++ I+G NG+GKTTLL+ I G++ P +G
Sbjct: 1 MIQLKNVGITL-SGKGYERFSLENINLEVNGEKVIILGPNGSGKTTLLRAISGLL-PYSG 58
Query: 333 T--------RTVHRNLK-----FGYFSQHHVDQLDMNLRCVQLLEAAFP----GKPQEEY 375
R + ++ + + + + G ++ +
Sbjct: 59 NIFINGMEVRKIRNYIRYSTNLPEAYEIG------VTVNDI----VYLYEELKGLDRDLF 108
Query: 376 RRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD 427
L + ++ + + LS GQ V + + P + LDEP ++D
Sbjct: 109 LEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVD 160
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint
center for structural genomics, JCSG, protein structu
initiative, PSI; 2.10A {Thermotoga maritima} SCOP:
c.37.1.12
Length = 256
Score = 78.0 bits (193), Expect = 2e-16
Identities = 36/143 (25%), Positives = 56/143 (39%), Gaps = 23/143 (16%)
Query: 310 GDNGAGKTTLLKIIMGIISPTAGT------------RTVHRNLKFGYFSQHHVDQLDMNL 357
G NGAGKTT L+II +I P++G V + + Y + N+
Sbjct: 48 GPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLI--SYLPEEA--GAYRNM 103
Query: 358 RCVQLLE--AAFPGKPQEEYRRQ----LGGFGVSGDLALQFVGSLSGGQKSRVAFARMCM 411
+ ++ L A F E G+ + V + S G ++ AR M
Sbjct: 104 QGIEYLRFVAGFYASSSSEIEEMVERATEIAGLG-EKIKDRVSTYSKGMVRKLLIARALM 162
Query: 412 AAPNFLVLDEPTNHLDIETIEAL 434
P +LDEPT+ LD+ +
Sbjct: 163 VNPRLAILDEPTSGLDVLNAREV 185
Score = 27.9 bits (63), Expect = 6.7
Identities = 7/43 (16%), Positives = 11/43 (25%), Gaps = 1/43 (2%)
Query: 104 FAELEAIEADKAPARASVILAGLGFTPEMQKRATKHFSGGWRK 146
A A + + G E K +S G +
Sbjct: 112 VAGFYASSSSEIEEMVERATEIAGLG-EKIKDRVSTYSKGMVR 153
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI,
protein structure initiative, midwest center for
structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga
maritima} SCOP: c.37.1.12
Length = 240
Score = 70.6 bits (174), Expect = 4e-14
Identities = 44/187 (23%), Positives = 76/187 (40%), Gaps = 54/187 (28%)
Query: 271 LLSPPILQLSEVNFEYVPGK-PILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISP 329
++S +L++ ++ Y G + + L + ++G NGAGKTT L I G++
Sbjct: 1 MVSDIVLEVQSLHVYY--GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRA 58
Query: 330 TAGT---------------------------R------TVHRNLKFGYFSQHHVDQLDMN 356
G R TV+ NL G +++ + + +
Sbjct: 59 QKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRD 118
Query: 357 LRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNF 416
L + L FP +E +QLG G+LSGG++ +A R M+ P
Sbjct: 119 LEWIFSL---FP--RLKERLKQLG-------------GTLSGGEQQMLAIGRALMSRPKL 160
Query: 417 LVLDEPT 423
L++DEP+
Sbjct: 161 LMMDEPS 167
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease
protein; asymmetric dimer, tetramer, P-glycoprotein;
HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Length = 243
Score = 65.6 bits (161), Expect = 2e-12
Identities = 48/200 (24%), Positives = 72/200 (36%), Gaps = 71/200 (35%)
Query: 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRT 335
+L V+F Y + IL ++ A S I G +G GK+T+ ++ PTAG T
Sbjct: 1 MLSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEIT 60
Query: 336 VHRNLKFGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLG--------------- 380
+ D + + L E +R Q+G
Sbjct: 61 I--------------D--GQPIDNISL----------ENWRSQIGFVSQDSAIMAGTIRE 94
Query: 381 --GFGVSGDL-------------ALQFVGS---------------LSGGQKSRVAFARMC 410
+G+ GD A FV + +SGGQ+ R+A AR
Sbjct: 95 NLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAF 154
Query: 411 MAAPNFLVLDEPTNHLDIET 430
+ P L+LDE T LD E+
Sbjct: 155 LRNPKILMLDEATASLDSES 174
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB;
ABC-transporter, transport protein; HET: ADP; 1.60A
{Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A*
2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Length = 247
Score = 63.7 bits (156), Expect = 1e-11
Identities = 49/197 (24%), Positives = 74/197 (37%), Gaps = 60/197 (30%)
Query: 277 LQLSEVNFEYVPGKP-ILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGT-- 333
+ + F Y P P IL N+ L I IVG +G+GK+TL K+I P G
Sbjct: 8 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 67
Query: 334 -----------------------------RTVHRNLKFGYFSQHHVDQLDMNLRCVQLLE 364
R++ N+ M++ +++
Sbjct: 68 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLA--------NPGMSVE--KVIY 117
Query: 365 AA-------FPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFL 417
AA F + +E Y +G G LSGGQ+ R+A AR + P L
Sbjct: 118 AAKLAGAHDFISELREGYNTIVGEQGAG----------LSGGQRQRIAIARALVNNPKIL 167
Query: 418 VLDEPTNHLDIETIEAL 434
+ DE T+ LD E+ E +
Sbjct: 168 IFDEATSALDYES-EHV 183
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein;
structural genomics; 1.70A {Aquifex aeolicus} PDB:
2pcl_A
Length = 224
Score = 62.9 bits (154), Expect = 1e-11
Identities = 49/184 (26%), Positives = 78/184 (42%), Gaps = 39/184 (21%)
Query: 275 PILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGT- 333
IL+ + + IL + L + I+G +G+GK+TLL I+ + +PT G
Sbjct: 3 EILRAENIKKVIRGYE-ILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKV 61
Query: 334 --------------RTVHRNLKFGY-FSQHHVDQLDMNLRCVQ--LLEAAFPGKPQEEYR 376
++ RN K G+ F H+ L L ++ ++ GKP++E +
Sbjct: 62 FLEGKEVDYTNEKELSLLRNRKLGFVFQFHY---LIPELTALENVIVPMLKMGKPKKEAK 118
Query: 377 RQLGGFGVSGDLALQFVG----------SLSGGQKSRVAFARMCMAAPNFLVLDEPTNHL 426
+ G+ L +G LSGG++ RVA AR P L DEPT +L
Sbjct: 119 ER-------GEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNL 171
Query: 427 DIET 430
D
Sbjct: 172 DSAN 175
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter,
ABCB6, nucleotide binding domain, heme BIOS transport
protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A*
3nhb_A*
Length = 306
Score = 60.7 bits (148), Expect = 2e-10
Identities = 58/232 (25%), Positives = 95/232 (40%), Gaps = 59/232 (25%)
Query: 247 LERLPELKPIEKEVEVVLKFPDTELLSPP--ILQLSEVNFEYVPGKPILTNVCLGATLES 304
+E + +L +++E EV P L ++ V+F Y G+ L +V
Sbjct: 25 MENMFDL--LKEETEVKDL-PGAGPLRFQKGRIEFENVHFSYADGRETLQDVSFTVMPGQ 81
Query: 305 RICIVGDNGAGKTTLLKIIMGIISPTAGT--------RTV-----HRNLKFGYFSQHHV- 350
+ +VG +GAGK+T+L+++ ++G V ++ G Q V
Sbjct: 82 TLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHI--GVVPQDTVL 139
Query: 351 --DQLDMNLR-------CVQLLEAA-----------FPGKPQEEYRRQLG--GFGVSGDL 388
D + N+R ++ AA FP E YR Q+G G +SG
Sbjct: 140 FNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFP----EGYRTQVGERGLKLSG-- 193
Query: 389 ALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINK 440
G+K RVA AR + AP ++LDE T+ LD A+ ++ K
Sbjct: 194 ----------GEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAK 235
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 61.8 bits (149), Expect = 3e-10
Identities = 61/474 (12%), Positives = 137/474 (28%), Gaps = 139/474 (29%)
Query: 23 KALTLHLHLEGGMV-SGQLRIPSHISVLHVEQEVVGDDTPAID--------SVLECDTKR 73
K + + G++ SG+ + + ++ V ++ C++
Sbjct: 151 KNVLID-----GVLGSGK-------TWVALD--VCLSYKVQCKMDFKIFWLNLKNCNSPE 196
Query: 74 QNLLNREKTITQAINNGTA----DANMSTELTQVFAELEAIEADKAPARASVILAGLGFT 129
L +K + Q N T+ +N+ + + AEL + K ++L +
Sbjct: 197 TVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV--- 253
Query: 130 PEMQKRATKHFSGGWRKMAIIWLENYLQNWPTTLLVVSHDRHFLDSV----PTDIFHLHS 185
+A F+ + +L+ + + D + T I H
Sbjct: 254 --QNAKAWNAFNLSCK-----------------ILLTTRFKQVTDFLSAATTTHISLDHH 294
Query: 186 QRIDTYRGNYEAFDK---IKTEKLKNQQREIE--AQRMHREHVQKFIDTF----RYNANR 236
T K + + L + + E ++ + T+ N ++
Sbjct: 295 SMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDK 354
Query: 237 ASSV-QSKIKQLERLP-ELKPIEKEVEVVLKFPDTELLSPPILQL--SEVNFEYVPGKPI 292
+++ +S + LE P E + + + V FP + + +L L +V V +
Sbjct: 355 LTTIIESSLNVLE--PAEYRKMFDRLSV---FPPSAHIPTILLSLIWFDVIKSDVM--VV 407
Query: 293 LTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNL--------KF-- 342
+ L + ++ I + + +HR++ F
Sbjct: 408 VN------KLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDS 461
Query: 343 ---------GYFSQH---HVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLAL 390
YF H H+ ++ R + L F L
Sbjct: 462 DDLIPPYLDQYFYSHIGHHLKNIEHPER-MTLFRMVF--------------------LDF 500
Query: 391 QFVGSLSGGQKSRVAFARMCMAAP------------NFLVLDEPTNHLDIETIE 432
+F+ QK R + ++ ++P + I
Sbjct: 501 RFL-----EQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAIL 549
Score = 49.5 bits (117), Expect = 2e-06
Identities = 40/236 (16%), Positives = 67/236 (28%), Gaps = 69/236 (29%)
Query: 168 HDRHFLDSVPTDIFHLHSQRIDTYRGNYEAFDK--------------IKTEKLK---NQQ 210
H H +D + Q D +AF + E++ +
Sbjct: 2 HHHHHMD---FETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSK 58
Query: 211 REIEAQRM--------HREHVQKFI-DTFRYNANRASSVQSKIKQLERLPELKPIEKEVE 261
+ E VQKF+ + R N + S IK +R P + +
Sbjct: 59 DAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYK---FLMSPIKTEQRQPSMMTRMYIEQ 115
Query: 262 VVLKFPDTELLSP-------PILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGA 314
+ D ++ + P L+L + E P K + I G G+
Sbjct: 116 RDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAK--------------NVLIDGVLGS 161
Query: 315 GKTTLLKIIMGIISPTAGTRTVHRNLKFGYF------SQHHVDQLDM--NLRCVQL 362
GKT + + V + F F L+M L Q+
Sbjct: 162 GKTWV-------ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKL-LYQI 209
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP,
cyclic peptide, membrane protein; 3.80A {Mus musculus}
PDB: 3g61_A* 3g60_A*
Length = 1284
Score = 61.6 bits (150), Expect = 3e-10
Identities = 48/198 (24%), Positives = 84/198 (42%), Gaps = 48/198 (24%)
Query: 277 LQLSEVNFEYV--PGKPILTNVCL----GATLESRICIVGDNGAGKTTLLKIIMGIISPT 330
L+ ++F Y IL + L G T + +VG++G GK+T ++++ + P
Sbjct: 388 LEFKNIHFSYPSRKEVQILKGLNLKVKSGQT----VALVGNSGCGKSTTVQLMQRLYDPL 443
Query: 331 AGTRTV-HRNLK----------FGYFSQHHV---DQLDMNLRC-------VQLLEAA--- 366
G ++ ++++ G SQ V + N+R ++ +A
Sbjct: 444 DGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEA 503
Query: 367 ----FPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEP 422
F K ++ +G G LSGGQK R+A AR + P L+LDE
Sbjct: 504 NAYDFIMKLPHQFDTLVGERGAQ----------LSGGQKQRIAIARALVRNPKILLLDEA 553
Query: 423 TNHLDIETIEALGKAINK 440
T+ LD E+ + A++K
Sbjct: 554 TSALDTESEAVVQAALDK 571
Score = 58.9 bits (143), Expect = 2e-09
Identities = 58/259 (22%), Positives = 95/259 (36%), Gaps = 88/259 (33%)
Query: 233 NANRASSVQSKIKQL-ERLPELKPIEKEVEVVLKFPDTELLSPPILQLSEVNFEY--VPG 289
+ +A+ S I ++ E+ PE+ + +Q S V F Y P
Sbjct: 993 DYAKATVSASHIIRIIEKTPEIDSYSTQGLKPNMLEGN-------VQFSGVVFNYPTRPS 1045
Query: 290 KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTV-HRNLKFGYFSQH 348
P+L + L + +VG +G GK+T+++++ P AG+ + + +K
Sbjct: 1046 IPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIK------- 1098
Query: 349 HVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLG-----------------GFGVSGDL--- 388
+N++ R QLG +G + +
Sbjct: 1099 -----QLNVQ---------------WLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSY 1138
Query: 389 -----------ALQFVGS---------------LSGGQKSRVAFARMCMAAPNFLVLDEP 422
QF+ S LSGGQK R+A AR + P+ L+LDE
Sbjct: 1139 EEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEA 1198
Query: 423 TNHLDIET----IEALGKA 437
T+ LD E+ EAL KA
Sbjct: 1199 TSALDTESEKVVQEALDKA 1217
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding
protein; beta-core domain; HET: ADP; 1.60A
{Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB:
1gaj_A 1g9x_A*
Length = 257
Score = 58.7 bits (143), Expect = 6e-10
Identities = 39/174 (22%), Positives = 54/174 (31%), Gaps = 43/174 (24%)
Query: 308 IVGDNGAGKTTLLKIIMGIISPTAGT----------------------RT---------- 335
I+G NG+GK+TL+ +I G + G RT
Sbjct: 38 IIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEM 97
Query: 336 -VHRNLKFGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVG 394
V NL G + + E E+ + L +S L + G
Sbjct: 98 TVLENLLIGEICPGESPLNSLFYKKWIPKEEEM----VEKAFKILEFLKLS-HLYDRKAG 152
Query: 395 SLSGGQKSRVAFARMCMAAPNFLVLDEPT---NHLDIETIEALGKAINK--YTF 443
LSGGQ V R M P +V+DEP I + TF
Sbjct: 153 ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITF 206
>3tif_A Uncharacterized ABC transporter ATP-binding prote;
nucleotide-binding domain, ABC transporter ATPase; HET:
ADP; 1.80A {Methanocaldococcus jannaschii dsm
2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Length = 235
Score = 57.2 bits (139), Expect = 1e-09
Identities = 52/180 (28%), Positives = 76/180 (42%), Gaps = 25/180 (13%)
Query: 276 ILQLSEVNFEYVPGK---PILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAG 332
+++L V Y G+ L NV L + I+G +G+GK+T+L II + PT G
Sbjct: 1 MVKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEG 60
Query: 333 T---------------RTVHRNLKFGY-FSQHHVDQLDMNLRCVQL--LEAAFPGKPQEE 374
T R K G+ F Q ++ L L V+L + EE
Sbjct: 61 EVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEE 120
Query: 375 YRRQ----LGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIET 430
R++ L + A LSGGQ+ RVA AR P ++ D+PT LD +T
Sbjct: 121 RRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKT 180
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane
protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Length = 240
Score = 57.2 bits (139), Expect = 1e-09
Identities = 36/161 (22%), Positives = 55/161 (34%), Gaps = 68/161 (42%)
Query: 306 ICIVGDNGAGKTTLLKIIMGIISPTAGT---------------R---------------T 335
++G GAGK+ L++I GI+ P G R +
Sbjct: 27 CVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLS 86
Query: 336 VHRNLKFGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRR---------QLGGFGVSG 386
V+RN+ +G LR + E R +
Sbjct: 87 VYRNIAYG-------------LR----------NVERVERDRRVREMAEKLGIAHL---- 119
Query: 387 DLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD 427
+ LSGG++ RVA AR + P L+LDEP + +D
Sbjct: 120 --LDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVD 158
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I
ABC type importer, methionine uptake transporter,
membrane protein; HET: ADP; 2.90A {Escherichia coli}
PDB: 3tuj_C 3tuz_C* 3dhw_C
Length = 366
Score = 58.1 bits (141), Expect = 2e-09
Identities = 46/169 (27%), Positives = 70/169 (41%), Gaps = 52/169 (30%)
Query: 308 IVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMN-LRCVQ----- 361
++G +GAGK+TL++ + + PT G+ V + L + L +
Sbjct: 59 VIGASGAGKSTLIRCVNLLERPTEGSVLVD---------GQELTTLSESELTKARRQIGM 109
Query: 362 ------LLEA-------AFP----GKPQEEYRRQLGGFGVSGDLALQFVG---------- 394
LL + A P P++E +R++ L VG
Sbjct: 110 IFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTEL-------LSLVGLGDKHDSYPS 162
Query: 395 SLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIET---IEALGKAINK 440
+LSGGQK RVA AR + P L+ D+ T+ LD T I L K IN+
Sbjct: 163 NLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINR 211
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial;
membrane protein, mitochondrial transport; HET: ACP LMT
CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Length = 595
Score = 58.4 bits (142), Expect = 3e-09
Identities = 53/228 (23%), Positives = 83/228 (36%), Gaps = 69/228 (30%)
Query: 248 ERLPELKPIEKEVEVVLKFPDTELLSPPI--LQLSEVNFEY--VPGKPILTNVCLGATLE 303
RL EL +E+E ++ L+ V+F Y P PI + L
Sbjct: 313 GRLWEL--LEREPKLPFNEGVILNEKSFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSG 370
Query: 304 SRICIVGDNGAGKTTLLKIIMGIISPTAGT------------------------------ 333
S +VG +G+GK+T+L +++ + P +GT
Sbjct: 371 SVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILF 430
Query: 334 -RTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEAA-----------FPGKPQEEYRRQLGG 381
++ N+ +G V ++ A FP + + +G
Sbjct: 431 SCSIAENIAYGADDPSSVTAEEI-------QRVAEVANAVAFIRNFP----QGFNTVVGE 479
Query: 382 FGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIE 429
GV LSGGQK R+A AR + P L+LDE T+ LD E
Sbjct: 480 KGVL----------LSGGQKQRIAIARALLKNPKILLLDEATSALDAE 517
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter,
lipid flippase, hydrolase, inner membrane, lipid
transport, membrane; HET: ANP; 3.70A {Salmonella
typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A*
3b5z_A* 3b5w_A
Length = 582
Score = 58.0 bits (141), Expect = 3e-09
Identities = 47/233 (20%), Positives = 80/233 (34%), Gaps = 55/233 (23%)
Query: 234 ANRASSVQSKIKQLERLPELKPIEKEVEVVLKFPDTELLSPPI--LQLSEVNFEYVP-GK 290
N + Q + + L + ++ E E ++ L+ V F Y
Sbjct: 302 TNVNAQFQRGMAACQTLFAI--LDSEQEKD---EGKRVIDRATGDLEFRNVTFTYPGREV 356
Query: 291 PILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGT----------------R 334
P L N+ L + +VG +G+GK+T+ +I G R
Sbjct: 357 PALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLR 416
Query: 335 ---------------TVHRNLKFGYFSQHHVDQLDMNLRCVQLLE--AAFPGKPQEEYRR 377
TV N+ + ++ +Q++ R ++
Sbjct: 417 NQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNG----LDT 472
Query: 378 QLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIET 430
+G GV LSGGQ+ R+A AR + L+LDE T+ LD E+
Sbjct: 473 IIGENGVL----------LSGGQRQRIAIARALLRDSPILILDEATSALDTES 515
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288;
multidrug transporter, transport protein; HET: ANP;
2.90A {Thermotoga maritima}
Length = 598
Score = 58.0 bits (141), Expect = 3e-09
Identities = 24/93 (25%), Positives = 47/93 (50%), Gaps = 6/93 (6%)
Query: 234 ANRASSVQSKIKQLERLPELKPIEKEVEVVLKFPDTELLSPPI--LQLSEVNFEYVPGKP 291
+N+ + +Q + ER+ E+ +E+E + PD L ++ V F Y KP
Sbjct: 314 SNQFNMIQMALASAERIFEILDLEEEKDD----PDAVELREVRGEIEFKNVWFSYDKKKP 369
Query: 292 ILTNVCLGATLESRICIVGDNGAGKTTLLKIIM 324
+L ++ ++ +VG G+GKTT++ ++M
Sbjct: 370 VLKDITFHIKPGQKVALVGPTGSGKTTIVNLLM 402
Score = 38.7 bits (91), Expect = 0.003
Identities = 17/47 (36%), Positives = 29/47 (61%)
Query: 394 GSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINK 440
LS GQ+ +A R +A P L+LDE T+++D +T +++ A+ K
Sbjct: 490 EDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWK 536
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter,
lipid flippase, hydrolase, inner membrane, lipid
transport, membrane; 5.50A {Vibrio cholerae}
Length = 582
Score = 57.6 bits (140), Expect = 4e-09
Identities = 45/245 (18%), Positives = 80/245 (32%), Gaps = 79/245 (32%)
Query: 234 ANRASSVQSKIKQLERLPELKPIEKEVEVVLKFPDTELLSPPI--LQLSEVNFEYVPG-K 290
+ S Q + + L L ++ E E + + +V F Y K
Sbjct: 302 TSVTSEFQRGMAACQTLFGL--MDLETERD---NGKYEAERVNGEVDVKDVTFTYQGKEK 356
Query: 291 PILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHV 350
P L++V + +VG +G+GK+T+ + +G+ +
Sbjct: 357 PALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSIC--------------L 402
Query: 351 DQLDMNLRCVQLLEAAFPGKPQEEYRRQLG-----------------GFGVSGDL----- 388
D ++R +L RR + G+
Sbjct: 403 D--GHDVRDYKL----------TNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQI 450
Query: 389 --------ALQFVGSL---------------SGGQKSRVAFARMCMAAPNFLVLDEPTNH 425
A++F+ ++ SGGQ+ RVA AR + L+LDE T+
Sbjct: 451 EQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSA 510
Query: 426 LDIET 430
LD E+
Sbjct: 511 LDTES 515
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET:
ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A*
2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Length = 263
Score = 54.9 bits (133), Expect = 1e-08
Identities = 40/152 (26%), Positives = 64/152 (42%), Gaps = 33/152 (21%)
Query: 305 RICIVGDNGAGKTTLLKIIMGIISPTAGTRTV--------HRNL-----KFGYFSQH--- 348
+ ++G +G+GK+T L+ + + G + NL + G Q
Sbjct: 52 VVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNL 111
Query: 349 --HVDQLD------MNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQ 400
H+ L+ M +R +A + + L G+ D A + SLSGGQ
Sbjct: 112 FPHMTVLNNITLAPMKVRKWPREKA------EAKAMELLDKVGLK-DKAHAYPDSLSGGQ 164
Query: 401 KSRVAFAR-MCMAAPNFLVLDEPTNHLDIETI 431
RVA AR + M P ++ DEPT+ LD E +
Sbjct: 165 AQRVAIARALAM-EPKIMLFDEPTSALDPEMV 195
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP;
1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Length = 262
Score = 53.7 bits (130), Expect = 3e-08
Identities = 39/163 (23%), Positives = 67/163 (41%), Gaps = 49/163 (30%)
Query: 306 ICIVGDNGAGKTTLLKIIMGIISPTAGTRTVH---------RNLKFGYFSQHHVD----Q 352
I I+G +G+GK+T L+ I + P+ G V+ ++ + ++ + +
Sbjct: 35 ISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTR 94
Query: 353 LDM-----NLRCVQLLEAAFP----------------GKPQEEYRRQ----LGGFGVSGD 387
L M NL + G + + R + L G+
Sbjct: 95 LTMVFQHFNL---------WSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDER 145
Query: 388 LALQFVGSLSGGQKSRVAFAR-MCMAAPNFLVLDEPTNHLDIE 429
++ LSGGQ+ RV+ AR + M P+ L+ DEPT+ LD E
Sbjct: 146 AQGKYPVHLSGGQQQRVSIARALAM-EPDVLLFDEPTSALDPE 187
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP;
2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Length = 271
Score = 53.7 bits (130), Expect = 3e-08
Identities = 41/207 (19%), Positives = 69/207 (33%), Gaps = 63/207 (30%)
Query: 267 PDTELLSPPILQ----LSEVNFEY--VPGKPILTNVCLGATLESRICIVGDNGAGKTTLL 320
P + L+P ++ +V+F Y P +L + +VG NG+GK+T+
Sbjct: 3 PLSGSLAPLNMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVA 62
Query: 321 KII-----------------------------MGIIS--PTAGTRTVHRNLKFGYFSQHH 349
++ + + P R+ N+ +G
Sbjct: 63 ALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYG------ 116
Query: 350 VDQLDMNLRCVQLLEAA-------FPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKS 402
L ++ A F + Y ++G G LSGGQ+
Sbjct: 117 ---LTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQ----------LSGGQRQ 163
Query: 403 RVAFARMCMAAPNFLVLDEPTNHLDIE 429
VA AR + P L+LD T+ LD
Sbjct: 164 AVALARALIRKPRLLILDNATSALDAG 190
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta
motif, beta sandwich, ligand binding protein; 1.90A
{Alicyclobacillus acidocaldarius}
Length = 355
Score = 54.2 bits (131), Expect = 3e-08
Identities = 46/187 (24%), Positives = 72/187 (38%), Gaps = 52/187 (27%)
Query: 273 SPPILQLSEVNFEYVPGKPILTNVCLGATLESR--ICIVGDNGAGKTTLLKIIMGIISPT 330
++ V Y G + V + + ++G +G+GKTT+L++I G+ PT
Sbjct: 11 GSMTIEFVGVEKIYPGGARSVRGVSF--QIREGEMVGLLGPSGSGKTTILRLIAGLERPT 68
Query: 331 AGT---------------R---------------TVHRNLKFGYFSQHHVDQLDMNLRCV 360
G R TV+ N+ FG + V + +M+ R
Sbjct: 69 KGDVWIGGKRVTDLPPQKRNVGLVFQNYALFQHMTVYDNVSFG-LREKRVPKDEMDARVR 127
Query: 361 QLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLD 420
+LL +L + A +F LSGGQ+ RVA AR P L+ D
Sbjct: 128 ELLRFM-----------RLESY------ANRFPHELSGGQQQRVALARALAPRPQVLLFD 170
Query: 421 EPTNHLD 427
EP +D
Sbjct: 171 EPFAAID 177
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC
transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo
sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A
1ckz_A
Length = 229
Score = 52.2 bits (126), Expect = 6e-08
Identities = 44/192 (22%), Positives = 75/192 (39%), Gaps = 49/192 (25%)
Query: 272 LSPPILQLSEVNFEYVPG-KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPT 330
L+ + + V + G P+L ++ + + G GAGKT+LL +IMG + P+
Sbjct: 2 LTTTEVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS 61
Query: 331 AGT------------------RTVHRNLKFGYFSQHHVDQLDMNLRCVQLLE--AAFPGK 370
G T+ N+ FG + + ++ QL E + F
Sbjct: 62 EGKIKHSGRISFCSQFSWIMPGTIKENIIFG--VSYDEYRYRSVIKACQLEEDISKFAE- 118
Query: 371 PQEEYRRQLGGFGVSGDLALQFVG----SLSGGQKSRVAFARMCMAAPNFLVLDEPTNHL 426
D + +G +LSGGQ++R++ AR + +LD P +L
Sbjct: 119 ---------------KDNIV--LGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYL 161
Query: 427 DIETIEALGKAI 438
D+ T K I
Sbjct: 162 DVLT----EKEI 169
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance
regulator, residues 1193-1427...; CFTR, ABC transporter,
nucleotide binding domain, NBD; HET: B44; 2.70A {Homo
sapiens}
Length = 390
Score = 52.0 bits (125), Expect = 2e-07
Identities = 40/185 (21%), Positives = 66/185 (35%), Gaps = 47/185 (25%)
Query: 278 QLSEVNFEYVPGKP-ILTNVCLGATLESRICIVGDNGAGKTTLL-----------KII-- 323
+ ++ +Y G IL N+ + R+ ++G G+GK+TLL +I
Sbjct: 21 TVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGEIQID 80
Query: 324 ---------------MGII--SPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEAA 366
G+I + T +NL + H ++ V L
Sbjct: 81 GVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLD--PNAAHSDQEIWKVADEVGLRSV- 137
Query: 367 FPGKPQE-EYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNH 425
P + ++ GG LS G K + AR ++ L+LDEP+ H
Sbjct: 138 IEQFPGKLDFVLVDGG------------CVLSHGHKQLMCLARSVLSKAKILLLDEPSAH 185
Query: 426 LDIET 430
LD T
Sbjct: 186 LDPVT 190
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding
cassette, transport protein; HET: ATP; 2.05A {Homo
sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A*
1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A*
1xfa_A*
Length = 290
Score = 50.8 bits (122), Expect = 3e-07
Identities = 45/211 (21%), Positives = 76/211 (36%), Gaps = 57/211 (27%)
Query: 257 EKEVEVVLKFPDTELLSPPILQLSEVNFE--YVPGKPILTNVCLGATLESRICIVGDNGA 314
E E+ K ++F + G P+L ++ + + G GA
Sbjct: 16 EGFGELFEKAKQNNNNRKTSNGDDSLSFSNFSLLGTPVLKDINFKIERGQLLAVAGSTGA 75
Query: 315 GKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEA-AFP----- 368
GKT+LL +IMG + P+ G + + + + SQ + P
Sbjct: 76 GKTSLLMMIMGELEPSEG--KIKHSGRISFCSQ----------------NSWIMPGTIKE 117
Query: 369 ---GKPQEEYR--------------RQLGGFGVSGDLALQFVG----SLSGGQKSRVAFA 407
G +EYR + D + +G +LSGGQ++R++ A
Sbjct: 118 NIIGVSYDEYRYRSVIKACQLEEDISKFAE----KDNIV--LGEGGITLSGGQRARISLA 171
Query: 408 RMCMAAPNFLVLDEPTNHLDIETIEALGKAI 438
R + +LD P +LD+ T K I
Sbjct: 172 RAVYKDADLYLLDSPFGYLDVLT----EKEI 198
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins,
MRP1/ABCC1, nucleotide-binding domain, ATP- binding,
hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Length = 237
Score = 49.5 bits (119), Expect = 5e-07
Identities = 31/157 (19%), Positives = 51/157 (32%), Gaps = 45/157 (28%)
Query: 277 LQLSEVNFEYVP-GKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGT-- 333
+ + F + P L + + + +VG G GK++LL ++ + G
Sbjct: 4 ITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVA 63
Query: 334 ----------------RTVHRNLKFGYFSQHHVDQLDMNLRCVQLLE--AAFPGKPQEEY 375
++ N+ FG Q ++ LL P
Sbjct: 64 IKGSVAYVPQQAWIQNDSLRENILFG--CQLEEPYYRSVIQACALLPDLEILPS------ 115
Query: 376 RRQLGGFGVSGDLALQFVG----SLSGGQKSRVAFAR 408
GD +G +LSGGQK RV+ AR
Sbjct: 116 ----------GDRTE--IGEKGVNLSGGQKQRVSLAR 140
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural
genomics, structural genomics consortium, SGC; 2.20A
{Plasmodium yoelii yoelii str}
Length = 260
Score = 49.5 bits (119), Expect = 7e-07
Identities = 17/45 (37%), Positives = 26/45 (57%)
Query: 396 LSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINK 440
LSGG++ R+A AR + P ++ DE T+ LD +T KA+
Sbjct: 156 LSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVED 200
Score = 38.7 bits (91), Expect = 0.002
Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 282 VNFEYV--PGKPILTNVCLGATLESRICIVGDNGAGKTTLLKII 323
VNF Y L ++ + +VG G+GK+T+ K++
Sbjct: 23 VNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLL 66
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein;
ATP-binding, nucleotide-binding, membrane,
transmembrane, transport protein; 3.00A {Methanosarcina
acetivorans} SCOP: b.40.6.3 c.37.1.12
Length = 348
Score = 49.5 bits (119), Expect = 9e-07
Identities = 35/158 (22%), Positives = 52/158 (32%), Gaps = 63/158 (39%)
Query: 306 ICIVGDNGAGKTTLLKIIMGIISPTAGT---------------R---------------T 335
I+G GAGKT L++I G P +G
Sbjct: 29 FVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMN 88
Query: 336 VHRNLKFGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRR------QLGGFGVSGDLA 389
V +NL+FG +R + ++
Sbjct: 89 VKKNLEFG-------------MR--------MKKIKDPKRVLDTARDLKIEHL------L 121
Query: 390 LQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD 427
+ +LSGG++ RVA AR + P L+LDEP + LD
Sbjct: 122 DRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALD 159
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter,
transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Length = 587
Score = 49.9 bits (120), Expect = 1e-06
Identities = 46/210 (21%), Positives = 77/210 (36%), Gaps = 49/210 (23%)
Query: 267 PDTELLSPPILQLSEVNFEYVPG--KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIM 324
+ V F Y P+L+ V S + ++G+ G+GK+TL+ +I
Sbjct: 332 ALALPNVEGSVSFENVEFRY-FENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIP 390
Query: 325 GIISPTAGTRTVH----RNL-------KFGYFSQHHV-------DQLDMNLR-------- 358
+I P G V R + Q V + NL+
Sbjct: 391 RLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSGTIKE----NLKWGREDATD 446
Query: 359 --CVQLLEAA----FPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMA 412
V+ + A F E Y ++ G + SGGQK R++ AR +
Sbjct: 447 DEIVEAAKIAQIHDFIISLPEGYDSRVERGGRN----------FSGGQKQRLSIARALVK 496
Query: 413 APNFLVLDEPTNHLDIETIEALGKAINKYT 442
P L+LD+ T+ +D T + + + +YT
Sbjct: 497 KPKVLILDDCTSSVDPITEKRILDGLKRYT 526
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding
domain, ABC motor domain, ferric iron transport, cell
inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Length = 359
Score = 49.1 bits (118), Expect = 1e-06
Identities = 43/189 (22%), Positives = 69/189 (36%), Gaps = 57/189 (30%)
Query: 275 PILQLSEVNFEYVPGKPILTNVCLGATLESR--ICIVGDNGAGKTTLLKIIMGIISPTAG 332
L + ++ + P+L ++ L +L+ + I+G +G GKTTLL+ + G P +G
Sbjct: 3 AALHIGHLSKSF-QNTPVLNDISL--SLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSG 59
Query: 333 T-------------------R---------------TVHRNLKFGYFSQHHVDQLDMNLR 358
R TV+RN+ +G R
Sbjct: 60 EISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYG-LGNGKGRTAQERQR 118
Query: 359 CVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLV 418
+LE + A ++ LSGGQ+ R A AR P ++
Sbjct: 119 IEAMLE-----------LTGISEL------AGRYPHELSGGQQQRAALARALAPDPELIL 161
Query: 419 LDEPTNHLD 427
LDEP + LD
Sbjct: 162 LDEPFSALD 170
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION
channel, transport protein, casse protein; 2.00A {Homo
sapiens} PDB: 2onj_A* 2hyd_A
Length = 578
Score = 48.7 bits (117), Expect = 2e-06
Identities = 19/45 (42%), Positives = 31/45 (68%)
Query: 396 LSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINK 440
LSGGQK R++ AR+ + P L+LDE T+ LD+E+ + +A++
Sbjct: 478 LSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDV 522
Score = 46.4 bits (111), Expect = 1e-05
Identities = 19/105 (18%), Positives = 47/105 (44%), Gaps = 6/105 (5%)
Query: 223 VQKFIDTFRYNANRASSVQSKIKQLERLPELKPIEKEVEVVLKFPDTELLSPPI--LQLS 280
++ R +++ ++R+ +L I+++ ++ + + + +
Sbjct: 287 LELLFGPLRRLVASFTTLTQSFASMDRVFQL--IDEDYDIKNG-VGAQPIEIKQGRIDID 343
Query: 281 EVNFEYVPGK-PILTNVCLGATLESRICIVGDNGAGKTTLLKIIM 324
V+F+Y + PIL ++ L + VG +G GK+TL+ +I
Sbjct: 344 HVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIP 388
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 46.2 bits (109), Expect = 2e-05
Identities = 59/395 (14%), Positives = 103/395 (26%), Gaps = 175/395 (44%)
Query: 104 FAELEAIEADKAP------ARASVILAGLGFTPEMQKRATKHFSGGWRKMAIIWLEN--- 154
F EL + ++ L+ L T A K F+ G + WLEN
Sbjct: 170 FEELRDLYQTYHVLVGDLIKFSAETLSELIRTTL---DAEKVFTQGLNILE--WLENPSN 224
Query: 155 -----YLQN----WPTTLLVVSHDRHF------LDSVPTDIFHL------HSQRI----- 188
YL + P L+ V H+ L P ++ HSQ +
Sbjct: 225 TPDKDYLLSIPISCP--LIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVA 282
Query: 189 ----DTYRGNYEAFDKIKTEKLKN--------QQ----REIEAQ---------------- 216
D++ E+F + + + +
Sbjct: 283 IAETDSW----ESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPM 338
Query: 217 ----RMHREHVQKFIDTFR-------------YNANRASSV------------------- 240
+ +E VQ +++ N + V
Sbjct: 339 LSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKA 398
Query: 241 -----QSKIKQLERLPE----------------LKP----IEKEVEVV--------LKFP 267
QS+I ER + L P I K++ ++ P
Sbjct: 399 PSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIP 458
Query: 268 --DTE----------LLSPPILQL---SEVNFEYVPGKPILTNVCLGATLESRI-CIVGD 311
DT +S I+ V +E + G S + +
Sbjct: 459 VYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHR 518
Query: 312 N--GAGKTTLLKIIMGIISPTAGTRTVHRNLKFGY 344
N G G + +I AGT ++ + +G+
Sbjct: 519 NKDGTG--------VRVIV--AGTLDINPDDDYGF 543
Score = 43.5 bits (102), Expect = 1e-04
Identities = 71/511 (13%), Positives = 122/511 (23%), Gaps = 194/511 (37%)
Query: 25 LTLHLHLEGGMVSGQLRIPS----HISVL---------HVEQEVVGDDTPAIDSVLECDT 71
LTL H G + L +P+ S L + DD P + E
Sbjct: 9 LTLS-H---GSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPT--TPAE--- 59
Query: 72 KRQNLLNR-EKTITQAINNGTADANMSTELTQVFAELEAIEADKAPARASVILAG----- 125
L+ + ++ + L E E + L G
Sbjct: 60 ----LVGKFLGYVSSLVEPSKVGQ-FDQVLNLCLTEFE-----------NCYLEGNDIHA 103
Query: 126 --LGFTPEMQKRATKHFSGGWRKMAIIWLENYLQ-----NWPTTLLVVSHDRHFLDSVPT 178
E K ++NY+ P + +V
Sbjct: 104 LAAKLLQENDTTLVKTKE---------LIKNYITARIMAKRPFDK---KSNSALFRAVGE 151
Query: 179 DIFHLHS---------------QRI-DTYRGNYEAFDKIKTEKLKNQQREIEAQRMHREH 222
L + + + TY K E L R
Sbjct: 152 GNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQ 211
Query: 223 VQKFIDTFRYNANRASSVQSKIKQLERLPELKPIEKEVEVVLKFPDTE-LLSPPI----- 276
++ I + P PD + LLS PI
Sbjct: 212 G---LN---------------ILEWLENPS------------NTPDKDYLLSIPISCPLI 241
Query: 277 --LQLSEVNFEYVPGKPILTNVCLGAT---LESRICIVGDNGAGKTTLLK-IIMGIISPT 330
+QL ++ ++T LG T L S + G T + ++ +
Sbjct: 242 GVIQL--AHY-------VVTAKLLGFTPGELRSYLK-------GATGHSQGLVTAVAIAE 285
Query: 331 AGT-----RTVHRNLKF----GYFSQHHVDQLDMNLRCVQLLEAAFPGKP---------- 371
+ +V + + G + ++ G P
Sbjct: 286 TDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLT 345
Query: 372 QEEYRRQLGGFGVSGD------LAL-----QFV--G---SL-------------SGGQKS 402
QE+ + + ++L V G SL SG +S
Sbjct: 346 QEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQS 405
Query: 403 RVAFARMCMAAPN----FLVLDEP--TNHLD 427
R+ F+ FL + P ++ L
Sbjct: 406 RIPFSER---KLKFSNRFLPVASPFHSHLLV 433
Score = 36.6 bits (84), Expect = 0.021
Identities = 52/253 (20%), Positives = 69/253 (27%), Gaps = 98/253 (38%)
Query: 156 LQNWPTTLLVVSHD--RHFLDSVPTDIFHLHSQRIDTYRGNYEAFDKI---KTEKLKNQQ 210
+ + T L +SH H L VPT F + SQ E F+KI TE
Sbjct: 1 MDAYSTRPLTLSHGSLEHVL-LVPTASFFIASQL-------QEQFNKILPEPTEGF-AAD 51
Query: 211 REIEAQRMHREHVQKFIDTFRYNANRASSVQSKIKQLERLPELKPIEKEVEVVLKFPDTE 270
E E V KF+ + + VE P
Sbjct: 52 DEPTTP---AELVGKFLG-Y-------------------------VSSLVE-----PSKV 77
Query: 271 LLSPPILQLSEVNFE--YVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIIS 328
+L L FE Y+ G I L A L TTL+K
Sbjct: 78 GQFDQVLNLCLTEFENCYLEGNDIHA---LAAKLLQEN---------DTTLVK------- 118
Query: 329 PTAGTRTVHRNLKFGYF-SQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGD 387
T+ + +N Y ++ + L A G Q
Sbjct: 119 ----TKELIKN----YITARIMAKRPFDKKSNSALFRAVGEGNAQ--------------- 155
Query: 388 LALQFVGSLSGGQ 400
L F GGQ
Sbjct: 156 LVAIF-----GGQ 163
Score = 35.4 bits (81), Expect = 0.049
Identities = 25/137 (18%), Positives = 42/137 (30%), Gaps = 42/137 (30%)
Query: 2 MSQRVNTVSNS---IFC-FSSEFYCKAL-TLHLHLEGGMVS---GQLRIPSHISVLHVE- 52
S+R SN + F S A ++ L VS ++IP V
Sbjct: 409 FSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIP----VYDTFD 464
Query: 53 ----QEVVGDDTPAI-DSVLE--------CDTKRQNLL----------------NREKTI 83
+ + G + I D ++ K ++L N++ T
Sbjct: 465 GSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTG 524
Query: 84 TQAINNGTADANMSTEL 100
+ I GT D N +
Sbjct: 525 VRVIVAGTLDINPDDDY 541
Score = 33.1 bits (75), Expect = 0.24
Identities = 47/242 (19%), Positives = 78/242 (32%), Gaps = 72/242 (29%)
Query: 23 KALTLHLHLEGGMVSGQLRIPSHISVLHVEQEVVGDDT--PAIDSVLECDTKR-----QN 75
LT+H GG G+ RI + S + E V G + E T +
Sbjct: 1670 VNLTIH---FGG-EKGK-RIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKG 1724
Query: 76 LLNREKT-ITQ-AI------------NNG-------------------TADAN-MSTE-- 99
LL+ T TQ A+ + G + A+ MS E
Sbjct: 1725 LLSA--TQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESL 1782
Query: 100 LTQVF----AELEAIEADKAPARASVILA------GLGFTPEMQKRATKHFS--GGWRKM 147
+ VF A+ D+ ++A F+ E + + GW
Sbjct: 1783 VEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGW--- 1839
Query: 148 AIIWLENYLQNWPTTLLVVSHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAFDKIKTEKLK 207
++ + NY N V + D LD+V + + Q+ID E + E+++
Sbjct: 1840 -LVEIVNY--NVENQQYVAAGDLRALDTVTNVLNFIKLQKID----IIELQKSLSLEEVE 1892
Query: 208 NQ 209
Sbjct: 1893 GH 1894
Score = 30.4 bits (68), Expect = 1.4
Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 11/56 (19%)
Query: 52 EQEVVGDDTPAIDSVLECDTKRQNLLNREKTITQAINNGTADANMSTELTQVFAEL 107
+Q V D A+D+V N+LN K Q I+ ++S E +V L
Sbjct: 1851 QQYVAAGDLRALDTV-------TNVLNFIK--LQKIDIIELQKSLSLE--EVEGHL 1895
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase,
ATP-binding cassette, ATPase, transport protein; 1.45A
{Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB:
1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Length = 353
Score = 44.6 bits (106), Expect = 4e-05
Identities = 39/160 (24%), Positives = 62/160 (38%), Gaps = 59/160 (36%)
Query: 306 ICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEA 365
I+G +GAGKTT ++II G+ P+ G L F D+ + ++
Sbjct: 34 FGILGPSGAGKTTFMRIIAGLDVPSTGE------LYFD-------DR-LVASNGKLIVPP 79
Query: 366 ------------------------AFP----GKPQEEYRRQLGGFGVSGDLALQFVG--- 394
AFP +EE R+++ + + +
Sbjct: 80 EDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRV-------EEVAKILDIHH 132
Query: 395 -------SLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD 427
LSG Q+ RVA AR + P+ L+LDEP ++LD
Sbjct: 133 VLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLD 172
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold,
coiled-coils, ATP binding, DNA bindi MRE11, replication;
HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A*
1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Length = 339
Score = 43.9 bits (103), Expect = 6e-05
Identities = 20/96 (20%), Positives = 34/96 (35%), Gaps = 9/96 (9%)
Query: 351 DQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFA--- 407
+ + + EE + +L + L F LSGG++ + A
Sbjct: 207 ELASEIFAEFTEGKYSEVVVRAEENKVRLFVVWEGKERPLTF---LSGGERIALGLAFRL 263
Query: 408 ---RMCMAAPNFLVLDEPTNHLDIETIEALGKAINK 440
+ L+LDEPT +LD E L + +
Sbjct: 264 AMSLYLAGEISLLILDEPTPYLDEERRRKLITIMER 299
Score = 35.0 bits (80), Expect = 0.046
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 306 ICIVGDNGAGKTTLLKII 323
I+G NG+GK++LL I
Sbjct: 26 NLIIGQNGSGKSSLLDAI 43
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC
transporter ATPase domain-like; HET: DNA ADP; 2.70A
{Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Length = 371
Score = 42.1 bits (99), Expect = 2e-04
Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 7/55 (12%)
Query: 393 VGSLSGGQKSRVAFA------RMCMAAP-NFLVLDEPTNHLDIETIEALGKAINK 440
+ +LSGG++ VA + + ++LDEPT +LD L + K
Sbjct: 278 IDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRK 332
Score = 32.9 bits (75), Expect = 0.18
Identities = 6/14 (42%), Positives = 12/14 (85%)
Query: 307 CIVGDNGAGKTTLL 320
I+G+NG+GK+++
Sbjct: 29 AIIGENGSGKSSIF 42
>1upt_A ARL1, ADP-ribosylation factor-like protein 1;
hydrolase/protein-binding, complex (GTPase/golgin),
golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP;
1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Length = 171
Score = 40.2 bits (95), Expect = 3e-04
Identities = 21/47 (44%), Positives = 27/47 (57%), Gaps = 7/47 (14%)
Query: 303 ESRICIVGDNGAGKTTLLKIIMG----IISPTAG--TRTV-HRNLKF 342
E RI I+G +GAGKTT+L + PT G TV ++NLKF
Sbjct: 7 EMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKF 53
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication;
1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B*
1us8_B*
Length = 148
Score = 39.7 bits (93), Expect = 4e-04
Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 6/56 (10%)
Query: 391 QFVGSLSGGQKSRVAFA------RMCMAAPNFLVLDEPTNHLDIETIEALGKAINK 440
+ + LSGG++ + A + L+LDEPT +LD E L + +
Sbjct: 53 RPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMER 108
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane
trafficking, structural genomics consortium, SGC,
transport protein; HET: GDP; 1.70A {Homo sapiens} PDB:
2h16_A* 1z6y_A* 1yzg_A*
Length = 181
Score = 39.9 bits (94), Expect = 5e-04
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 7/47 (14%)
Query: 303 ESRICIVGDNGAGKTTLLKIIMG----IISPTAG--TRTV-HRNLKF 342
E ++ IVG + AGKTT+L SPT G + N +F
Sbjct: 21 EHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRF 67
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF
family; HET: CME GDP; 1.80A {Mus musculus} SCOP:
c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Length = 186
Score = 39.5 bits (93), Expect = 7e-04
Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 7/47 (14%)
Query: 303 ESRICIVGDNGAGKTTLLKIIMGI----ISPTAG--TRTV-HRNLKF 342
E R+ ++G + AGKTT+LK G ISPT G +T+ HR K
Sbjct: 18 ELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKL 64
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein
binding; HET: GDP; 3.17A {Saccharomyces cerevisiae}
SCOP: c.37.1.8
Length = 183
Score = 39.5 bits (93), Expect = 7e-04
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 7/47 (14%)
Query: 303 ESRICIVGDNGAGKTTLLKIIMG----IISPTAG--TRTV-HRNLKF 342
E RI I+G +GAGKTT+L + PT G T+ ++NLK
Sbjct: 18 ELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSYKNLKL 64
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without
magnesium, ARF family, RAS superfamily, G-domain,
signaling protein; HET: MES GDP; 1.70A {Mus musculus}
SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Length = 181
Score = 39.5 bits (93), Expect = 7e-04
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 7/47 (14%)
Query: 303 ESRICIVGDNGAGKTTLLKIIMGI----ISPTAG--TRTV-HRNLKF 342
E RI ++G + AGKTTLLK + I+PT G ++V + K
Sbjct: 16 EVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKL 62
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural
genomics, structural G consortium, SGC, protein
transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8
PDB: 1z6x_A* 3aq4_A*
Length = 192
Score = 39.6 bits (93), Expect = 8e-04
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 7/47 (14%)
Query: 303 ESRICIVGDNGAGKTTLLKIIMG----IISPTAG--TRTV-HRNLKF 342
+ RI +VG + AGKTT+L + PT G TV ++N+ F
Sbjct: 29 QMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICF 75
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport
protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 187
Score = 39.2 bits (92), Expect = 0.001
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 7/47 (14%)
Query: 303 ESRICIVGDNGAGKTTLLKIIMG----IISPTAG--TRTV-HRNLKF 342
E ++ IVG + AGKTT+L SPT G + N +F
Sbjct: 16 EHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRF 62
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase,
nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Length = 189
Score = 38.8 bits (91), Expect = 0.001
Identities = 13/47 (27%), Positives = 25/47 (53%), Gaps = 7/47 (14%)
Query: 303 ESRICIVGDNGAGKTTLLKIIMG----IISPTAG--TRTV-HRNLKF 342
+ R+ ++G + AGKT++L + PT G T+ ++N+ F
Sbjct: 22 KIRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVGVNLETLQYKNISF 68
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding,
membrane trafficking, structural genomics, structural
genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Length = 188
Score = 38.7 bits (91), Expect = 0.001
Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 8/48 (16%)
Query: 303 ESRICIVGDNGAGKTTLL-KIIMG----IISPTAG--TRTV-HRNLKF 342
E + +VG +GKTT + I G + PT G R + N+
Sbjct: 22 EMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTI 69
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta
barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Length = 190
Score = 38.3 bits (90), Expect = 0.002
Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 7/47 (14%)
Query: 303 ESRICIVGDNGAGKTTLLKIIMG----IISPTAG--TRTV-HRNLKF 342
++ +G + AGKTTLL ++ + PT + + N+KF
Sbjct: 23 HGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKF 69
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor,
protein transport-exchang complex; HET: GDP; 1.46A {Bos
taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A*
1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A*
1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A*
2a5f_A* 2j5x_A* 1e0s_A* ...
Length = 164
Score = 37.9 bits (89), Expect = 0.002
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 7/45 (15%)
Query: 305 RICIVGDNGAGKTTLLKIIMG----IISPTAG--TRTV-HRNLKF 342
RI +VG + AGKTT+L + PT G TV ++N+ F
Sbjct: 2 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISF 46
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein
transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP:
c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Length = 198
Score = 37.3 bits (87), Expect = 0.004
Identities = 11/47 (23%), Positives = 20/47 (42%), Gaps = 7/47 (14%)
Query: 303 ESRICIVGDNGAGKTTLLKIIMG----IISPTAG--TRTV-HRNLKF 342
++ +G + AGKTTLL ++ PT + + + F
Sbjct: 25 TGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTF 71
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding
protein; structural genomics, NPPSFA; 1.94A {Pyrococcus
horikoshii}
Length = 362
Score = 38.0 bits (89), Expect = 0.005
Identities = 43/157 (27%), Positives = 66/157 (42%), Gaps = 58/157 (36%)
Query: 306 ICIVGDNGAGKTTLLKIIMGIISPTAGT---------------R---------------T 335
+ ++G +G+GK+TLL I GI PT+G R T
Sbjct: 32 MALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLVFQNWALYPHMT 91
Query: 336 VHRNLKFGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFV-- 393
V++N+ F + LR P+EE +++ V+ L + +
Sbjct: 92 VYKNIAFP-----------LELR----------KAPREEIDKKVRE--VAKMLHIDKLLN 128
Query: 394 ---GSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD 427
LSGGQ+ RVA AR + P L+LDEP ++LD
Sbjct: 129 RYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLD 165
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane
trafficking, structural genomics consortium, SGC,
transport protein; HET: GTP; 2.00A {Homo sapiens}
Length = 190
Score = 36.9 bits (86), Expect = 0.005
Identities = 12/49 (24%), Positives = 20/49 (40%), Gaps = 9/49 (18%)
Query: 303 ESRICIVGDNGAGKTTLLKIIMG------IISPTAG--TRTV-HRNLKF 342
E + +G + +GKTT++ + I PT G +L F
Sbjct: 21 EVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKFKSSSLSF 69
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 36.5 bits (83), Expect = 0.006
Identities = 12/63 (19%), Positives = 18/63 (28%), Gaps = 35/63 (55%)
Query: 241 QSKIKQLERLPELKPIEKEVEVVLKFPDTELLSPPILQLSEVNFEYVPGKPILTNVCLGA 300
Q+ +K+L+ LK D S P L + A
Sbjct: 20 QA-LKKLQA--SLKLYA---------DD----SAPALAIK-------------------A 44
Query: 301 TLE 303
T+E
Sbjct: 45 TME 47
Score = 33.8 bits (76), Expect = 0.043
Identities = 11/45 (24%), Positives = 19/45 (42%), Gaps = 19/45 (42%)
Query: 80 EKTITQAINNGTADANMSTELTQVFAELEAIEADKAPA---RASV 121
EK QA+ + L +++A D APA +A++
Sbjct: 18 EK---QALKK------LQASL-KLYA------DDSAPALAIKATM 46
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta,
hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Length = 194
Score = 35.9 bits (83), Expect = 0.012
Identities = 24/90 (26%), Positives = 30/90 (33%), Gaps = 11/90 (12%)
Query: 288 PGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQ 347
PG + L + +VGD GKT LL P TV + Y
Sbjct: 3 PGAGRSSMAHGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDH----YAVS 58
Query: 348 HHVDQLDMNLRCVQLLEAAFPGKPQEEYRR 377
V L L + A G QE+Y R
Sbjct: 59 VTVGGKQYLL---GLYDTA--G--QEDYDR 81
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics,
structural genomics consortium,; HET: GDP; 1.73A {Homo
sapiens}
Length = 201
Score = 35.5 bits (82), Expect = 0.019
Identities = 25/91 (27%), Positives = 36/91 (39%), Gaps = 12/91 (13%)
Query: 288 PGKPILTNVCLGATLESR-ICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFS 346
PG+P GA +VGD GKT+L+ PT T N + +
Sbjct: 4 PGEPGGRGRAGGAEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDN----FSA 59
Query: 347 QHHVDQLDMNLRCVQLLEAAFPGKPQEEYRR 377
VD + L QL + A G Q+E+ +
Sbjct: 60 VVSVDGRPVRL---QLCDTA--G--QDEFDK 83
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein
transport, G protein, proline isomerization, circular
permutation; 2.20A {Saccharomyces cerevisiae}
Length = 193
Score = 35.1 bits (81), Expect = 0.021
Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 303 ESRICIVGDNGAGKTTLL-KIIMGIISPTAGT 333
+ I I G +GKT+LL + + PT +
Sbjct: 48 QPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVS 79
>1nrj_B SR-beta, signal recognition particle receptor beta subunit;
transmembrane, endoplasmic reticulum, GTP-binding; HET:
GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Length = 218
Score = 35.1 bits (81), Expect = 0.025
Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 303 ESRICIVGDNGAGKTTLL-KIIMGIISPTAGT 333
+ I I G +GKT+LL + + PT +
Sbjct: 12 QPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVS 43
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP:
a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Length = 549
Score = 35.7 bits (82), Expect = 0.032
Identities = 31/171 (18%), Positives = 60/171 (35%), Gaps = 21/171 (12%)
Query: 163 LLVVSHDRHFLDSVPTDIF-HLHSQRIDTYRGNYEAFDKIKTEKLKNQQRE--IEAQRMH 219
L +H R D P D +L + I T + + I + ++ + R
Sbjct: 9 ALSTAHTRLIHDFEPRDALTYLEGKNIFTE----DHSELISKMSTRLERIANFLRIYRRQ 64
Query: 220 REHVQKFIDTFRYNANR--ASSVQSKIKQLERLPEL-KPIEKEVEVVLKFPDTELLSPPI 276
+ ID F YN A ++ I P+L +P+ + + D +LL +
Sbjct: 65 ASELGPLIDFFNYNNQSHLADFLEDYIDFAINEPDLLRPVVIAPQFSRQMLDRKLLLGNV 124
Query: 277 LQLSEVNFEYVPGKPI------LTNVCLGATLESRICIVGDNGAGKTTLLK 321
+ Y+ + L +C + + + G G+GK+ +
Sbjct: 125 PKQMTC---YIREYHVDRVIKKLDEMCDLDS--FFLFLHGRAGSGKSVIAS 170
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold,
coiled-coils, ATPase, exonuclease, endonucle binding,
DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB:
3qkr_A*
Length = 203
Score = 34.2 bits (79), Expect = 0.041
Identities = 8/14 (57%), Positives = 12/14 (85%)
Query: 307 CIVGDNGAGKTTLL 320
I+G NG+GK++LL
Sbjct: 27 LIIGQNGSGKSSLL 40
>2fh5_B SR-beta, signal recognition particle receptor beta subunit;
endomembrane targeting, GTPase, GAP, longin domain,
SEDL, transport protein; HET: GTP; 2.45A {Mus musculus}
SCOP: c.37.1.8 PDB: 2go5_2
Length = 214
Score = 34.3 bits (79), Expect = 0.041
Identities = 8/29 (27%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 303 ESRICIVGDNGAGKTTLL-KIIMGIISPT 330
+ + VG +GKT L +++ G T
Sbjct: 7 QRAVLFVGLCDSGKTLLFVRLLTGQYRDT 35
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication;
1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A*
1us8_A*
Length = 149
Score = 33.9 bits (78), Expect = 0.041
Identities = 8/14 (57%), Positives = 12/14 (85%)
Query: 307 CIVGDNGAGKTTLL 320
I+G NG+GK++LL
Sbjct: 27 LIIGQNGSGKSSLL 40
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292;
mixed alpha-beta protein, rossman fold, signaling
protein, transferase; 1.40A {Aquifex aeolicus} SCOP:
c.37.1.11
Length = 178
Score = 34.2 bits (78), Expect = 0.042
Identities = 22/143 (15%), Positives = 44/143 (30%), Gaps = 25/143 (17%)
Query: 305 RICIVGDNGAGKTTLLKIIMGIISP------TAGTRTVHRNLKFGYFSQHHVDQLDMNLR 358
+I I G+ G GKTTL+K I+ + T R + G+ + +
Sbjct: 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGF------RIITTEGK 55
Query: 359 CVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLV 418
F K G +GV+ + A+ ++
Sbjct: 56 KKIFSSKFFTSKKLV------GSYGVNVQYFEEL-----AIPILERAYREAKKDRRKVII 104
Query: 419 LDE--PTNHLDIETIEALGKAIN 439
+DE + + + + ++
Sbjct: 105 IDEIGKMELFSKKFRDLVRQIMH 127
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active
transport, sugar uptake and regulation, transport
protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3
b.40.6.3 c.37.1.12 PDB: 1vci_A*
Length = 372
Score = 34.5 bits (80), Expect = 0.061
Identities = 37/157 (23%), Positives = 65/157 (41%), Gaps = 58/157 (36%)
Query: 306 ICIVGDNGAGKTTLLKIIMGIISPTAGT---------------R---------------T 335
+ ++G +G GKTT L++I G+ PT G R T
Sbjct: 40 LVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMT 99
Query: 336 VHRNLKFGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFV-- 393
V+ N+ F + ++ P++E +++ + L ++ +
Sbjct: 100 VYENIAFP-----------LKIK----------KFPKDEIDKRVRW--AAELLQIEELLN 136
Query: 394 ---GSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD 427
LSGGQ+ RVA AR + P+ L++DEP ++LD
Sbjct: 137 RYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLD 173
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, binding; 1.70A {Thermus thermophilus} PDB:
2d2f_A*
Length = 250
Score = 33.3 bits (77), Expect = 0.10
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 4/41 (9%)
Query: 287 VPGKPILTNVCLGATLES-RI-CIVGDNGAGKTTLLKIIMG 325
+ G+ IL V L + + ++G NGAGK+TL KI+ G
Sbjct: 13 IDGETILKGVNL--VVPKGEVHALMGPNGAGKSTLGKILAG 51
Score = 32.1 bits (74), Expect = 0.24
Identities = 14/45 (31%), Positives = 26/45 (57%)
Query: 397 SGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441
SGG+K R ++ + P + VLDE + LDI+ ++ + + +N
Sbjct: 145 SGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAM 189
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin,
small GTPase, structural genomic consortium, SGC; HET:
GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Length = 214
Score = 33.3 bits (76), Expect = 0.11
Identities = 16/72 (22%), Positives = 28/72 (38%), Gaps = 11/72 (15%)
Query: 306 ICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEA 365
+ +VGD GKT +L+++ P TV N Y + ++ + L L +
Sbjct: 30 LVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFEN----YTACLETEEQRVEL---SLWDT 82
Query: 366 AFPGKPQEEYRR 377
+ G Y
Sbjct: 83 S--G--SPYYDN 90
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR,
protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 307
Score = 33.4 bits (76), Expect = 0.11
Identities = 9/28 (32%), Positives = 18/28 (64%)
Query: 302 LESRICIVGDNGAGKTTLLKIIMGIISP 329
L S++ ++G +G+GK+++ II S
Sbjct: 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSA 29
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A
{Brucella suis}
Length = 361
Score = 33.4 bits (77), Expect = 0.13
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 306 ICIVGDNGAGKTTLLKIIMGIISPT 330
I + G+ G+GKTTL+K +M I
Sbjct: 178 IVVAGETGSGKTTLMKALMQEIPFD 202
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga
maritima} PDB: 3qg5_A 3tho_A*
Length = 365
Score = 33.3 bits (76), Expect = 0.14
Identities = 10/54 (18%), Positives = 23/54 (42%), Gaps = 6/54 (11%)
Query: 393 VGSLSGGQKSRVAFA------RMCMAAPNFLVLDEPTNHLDIETIEALGKAINK 440
LSGG+++ ++ + + + +DE + LD E E + + +
Sbjct: 277 ARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKE 330
Score = 32.9 bits (75), Expect = 0.21
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 307 CIVGDNGAGKTTLL 320
+ G NGAGK++L
Sbjct: 27 VVEGPNGAGKSSLF 40
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial
GTPase, bacterial POL motility, POLE localisation,
alpha/beta protein; HET: GDP; 1.90A {Thermus
thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Length = 198
Score = 32.8 bits (75), Expect = 0.15
Identities = 12/44 (27%), Positives = 16/44 (36%), Gaps = 10/44 (22%)
Query: 303 ESRICIVGDNGAGKTTLLKIIMGIIS----------PTAGTRTV 336
+I G +GKTT LK I + T RT+
Sbjct: 14 NFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTL 57
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha
and beta proteins (A/B) TM0421, structural genomics,
NPPSFA; 2.11A {Thermotoga maritima}
Length = 359
Score = 33.3 bits (77), Expect = 0.15
Identities = 17/32 (53%), Positives = 22/32 (68%)
Query: 396 LSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD 427
LSGGQ+ RVA AR + P L+ DEP ++LD
Sbjct: 134 LSGGQQQRVALARALVKQPKVLLFDEPLSNLD 165
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster,
ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding;
HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Length = 267
Score = 32.9 bits (76), Expect = 0.17
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Query: 287 VPGKPILTNVCLGATLES-RI-CIVGDNGAGKTTLLKIIMG 325
V K IL + L + + I+G NG+GK+TL + G
Sbjct: 30 VEDKAILRGLSL--DVHPGEVHAIMGPNGSGKSTLSATLAG 68
Score = 31.7 bits (73), Expect = 0.37
Identities = 14/45 (31%), Positives = 24/45 (53%)
Query: 397 SGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441
SGG+K R +M + P +LDE + LDI+ ++ + +N
Sbjct: 166 SGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSL 210
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium,
SGC, cytoplasm, nucleotide-binding, nucleus,
phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB:
2q3f_A*
Length = 196
Score = 32.6 bits (74), Expect = 0.17
Identities = 8/27 (29%), Positives = 18/27 (66%)
Query: 303 ESRICIVGDNGAGKTTLLKIIMGIISP 329
+ RI ++G +GK+++ K++ +SP
Sbjct: 20 KPRILLMGLRRSGKSSIQKVVFHKMSP 46
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein,
signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB:
2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A*
3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B*
1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Length = 201
Score = 32.4 bits (74), Expect = 0.18
Identities = 24/72 (33%), Positives = 30/72 (41%), Gaps = 11/72 (15%)
Query: 306 ICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEA 365
+ IVGD GKT LL + P TV N Y + VD + L L +
Sbjct: 28 LVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFEN----YIADIEVDGKQVEL---ALWDT 80
Query: 366 AFPGKPQEEYRR 377
A G QE+Y R
Sbjct: 81 A--G--QEDYDR 88
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion,
hydrolas binding complex; 2.40A {Helicobacter pylori}
SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Length = 330
Score = 32.7 bits (75), Expect = 0.19
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 306 ICIVGDNGAGKTTLLKIIMGIISPT 330
+ + G G+GKTT +K IM I
Sbjct: 174 VIVCGGTGSGKTTYIKSIMEFIPKE 198
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling
protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8
PDB: 2v55_B*
Length = 184
Score = 32.0 bits (73), Expect = 0.20
Identities = 19/73 (26%), Positives = 28/73 (38%), Gaps = 11/73 (15%)
Query: 305 RICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLE 364
+I +VGD+ GKT LL + P TV N Y + +D + L L +
Sbjct: 9 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFEN----YTASFEIDTQRIEL---SLWD 61
Query: 365 AAFPGKPQEEYRR 377
+ G Y
Sbjct: 62 TS--G--SPYYDN 70
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase,
signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP:
c.37.1.8
Length = 205
Score = 32.0 bits (73), Expect = 0.23
Identities = 19/73 (26%), Positives = 28/73 (38%), Gaps = 11/73 (15%)
Query: 305 RICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLE 364
+I +VGD+ GKT LL + P TV N Y + +D + L L +
Sbjct: 30 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFEN----YTASFEIDTQRIEL---SLWD 82
Query: 365 AAFPGKPQEEYRR 377
+ G Y
Sbjct: 83 TS--G--SPYYDN 91
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2
function project, S2F, unknown function; HET: ADP; 1.70A
{Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Length = 158
Score = 31.4 bits (72), Expect = 0.24
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 7/32 (21%)
Query: 306 ICIVGDNGAGKTTLLKII---MGII----SPT 330
+ + GD GAGKTTL + + +G SPT
Sbjct: 36 VYLNGDLGAGKTTLTRGMLQGIGHQGNVKSPT 67
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport,
maltose uptake and regulation, sugar binding protein;
1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3
c.37.1.12 PDB: 2d62_A
Length = 372
Score = 32.2 bits (74), Expect = 0.30
Identities = 15/32 (46%), Positives = 21/32 (65%)
Query: 396 LSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD 427
LSGGQ+ RVA R + P ++DEP ++LD
Sbjct: 140 LSGGQRQRVALGRAIVRKPQVFLMDEPLSNLD 171
Score = 29.1 bits (66), Expect = 3.1
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 306 ICIVGDNGAGKTTLLKIIMGIISPTAGT 333
+ ++G +G GKTT L++I G+ P+ G
Sbjct: 32 MILLGPSGCGKTTTLRMIAGLEEPSRGQ 59
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A
motif, P-loop, signature motif,
replication/recombination complex; HET: DNA; 1.61A
{Deinococcus radiodurans}
Length = 359
Score = 32.2 bits (74), Expect = 0.31
Identities = 10/14 (71%), Positives = 11/14 (78%)
Query: 307 CIVGDNGAGKTTLL 320
I G+NGAGKT LL
Sbjct: 30 GIYGENGAGKTNLL 43
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase,
GTP binding, protein binding, signali protein; HET: GNP;
2.30A {Homo sapiens}
Length = 204
Score = 31.7 bits (72), Expect = 0.34
Identities = 24/72 (33%), Positives = 29/72 (40%), Gaps = 11/72 (15%)
Query: 306 ICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEA 365
+VGD GKT LL P TV N Y + VD +NL L +
Sbjct: 33 CVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDN----YSANVMVDGKPVNL---GLWDT 85
Query: 366 AFPGKPQEEYRR 377
A G QE+Y R
Sbjct: 86 A--G--QEDYDR 93
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase;
HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A*
2jas_A*
Length = 205
Score = 31.1 bits (70), Expect = 0.46
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 305 RICIVGDNGAGKTTLLKII 323
+I I G GAGK+T+ I
Sbjct: 2 KIAIFGTVGAGKSTISAEI 20
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI,
protein structure initiative; 1.90A {Geobacillus
stearothermophilus} SCOP: c.37.1.6
Length = 201
Score = 31.2 bits (71), Expect = 0.48
Identities = 13/78 (16%), Positives = 23/78 (29%), Gaps = 12/78 (15%)
Query: 306 ICIVGDNGAGKTTLLKIIMGIISPTAGTRTV------HRNLKFGYFSQH------HVDQL 353
+ I G + +GKTTL + + + V Y + + + Q
Sbjct: 25 LGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVERAKRYHTGNEEWFEYYYLQW 84
Query: 354 DMNLRCVQLLEAAFPGKP 371
D+ QL
Sbjct: 85 DVEWLTHQLFRQLKASHQ 102
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm,
lipoprotein, membrane, methylation, nucleotide-binding,
prenylation, ----; HET: GDP; 1.53A {Arabidopsis
thaliana} PDB: 2nty_C* 2wbl_C
Length = 182
Score = 30.8 bits (70), Expect = 0.53
Identities = 23/72 (31%), Positives = 29/72 (40%), Gaps = 11/72 (15%)
Query: 306 ICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEA 365
VGD GKT LL PT TV N + + V+ +NL L +
Sbjct: 11 CVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDN----FSANVVVNGATVNL---GLWDT 63
Query: 366 AFPGKPQEEYRR 377
A G QE+Y R
Sbjct: 64 A--G--QEDYNR 71
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter
sphaeroides} SCOP: c.37.1.6
Length = 290
Score = 31.2 bits (70), Expect = 0.54
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 306 ICIVGDNGAGKTTLLKIIMGII 327
I + G +GAG +T+ I
Sbjct: 8 ISVTGSSGAGTSTVKHTFDQIF 29
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super
family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8
PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D*
2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A*
3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Length = 186
Score = 30.9 bits (70), Expect = 0.55
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 299 GATLESRICIVGDNGAGKTTLL 320
G+ + +VGD GKT LL
Sbjct: 1 GSPQAIKCVVVGDGAVGKTCLL 22
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer,
nucleotide twinning, protein complex, protein transport;
HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1
c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D
2iyl_D* 2cnw_D* 2j7p_D*
Length = 304
Score = 31.4 bits (72), Expect = 0.60
Identities = 18/67 (26%), Positives = 25/67 (37%), Gaps = 12/67 (17%)
Query: 252 ELKPIEKEVEVVLKFPDTELLSPPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGD 311
+LK KE V + PD + L + + V K + +VG
Sbjct: 63 DLKEAVKEKLVGMLEPDERRATLRKLGFNPQKPKPVEPKG------------RVVLVVGV 110
Query: 312 NGAGKTT 318
NG GKTT
Sbjct: 111 NGVGKTT 117
>1xjc_A MOBB protein homolog; structural genomics, midwest center for
structural GEN PSI, protein structure initiative, MCSG;
2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Length = 169
Score = 30.4 bits (68), Expect = 0.65
Identities = 9/46 (19%), Positives = 15/46 (32%), Gaps = 8/46 (17%)
Query: 306 ICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVD 351
+VG +GKTTL++ + + G H
Sbjct: 7 WQVVGYKHSGKTTLMEKWVAAAV--------REGWRVGTVKHHGHG 44
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane,
prenylation, hydrolase, nucleotide-binding, methylation,
lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo
sapiens}
Length = 214
Score = 30.5 bits (69), Expect = 0.72
Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 11/72 (15%)
Query: 306 ICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEA 365
+ +VGD G GKT+LL + P + T TV Y V ++L + +
Sbjct: 37 VVLVGDGGCGKTSLLMVFADGAFPESYTPTVFER----YMVNLQVKGKPVHL---HIWDT 89
Query: 366 AFPGKPQEEYRR 377
A G Q++Y R
Sbjct: 90 A--G--QDDYDR 97
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein
transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Length = 320
Score = 30.6 bits (70), Expect = 0.86
Identities = 10/75 (13%), Positives = 24/75 (32%), Gaps = 12/75 (16%)
Query: 244 IKQLERLPELKPIEKEVEVVLKFPDTELLSPPILQLSEVNFEYVPGKPILTNVCLGATLE 303
+ + + + ++ L + + + ++ + N+
Sbjct: 58 SNLVRKKTKRDTSFENIKDALVESLYQAYTDNDWTNKKYRIDFKENRL---NI------- 107
Query: 304 SRICIVGDNGAGKTT 318
+VG NG GKTT
Sbjct: 108 --FMLVGVNGTGKTT 120
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein,
feedback inhibition, deoxyribonucleoside kinase, salvage
pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP:
c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A*
2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A*
1zm7_A* 1zmx_A*
Length = 230
Score = 30.4 bits (68), Expect = 0.89
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 305 RICIVGDNGAGKTTLLKII 323
+ I G+ G+GKTT L
Sbjct: 22 TVLIEGNIGSGKTTYLNHF 40
>1kht_A Adenylate kinase; phosphotransferase, signaling protein,
transferase; HET: AMP; 2.50A {Methanococcus voltae}
SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Length = 192
Score = 29.6 bits (66), Expect = 1.2
Identities = 6/23 (26%), Positives = 11/23 (47%)
Query: 305 RICIVGDNGAGKTTLLKIIMGII 327
+ + G G G TT ++ M +
Sbjct: 5 VVVVTGVPGVGSTTSSQLAMDNL 27
>3q94_A Fructose-bisphosphate aldolase, class II; structural genomics,
center for structural genomics of infec diseases, csgid,
alpha-beta barrel; HET: 13P; 2.30A {Bacillus anthracis}
Length = 288
Score = 30.2 bits (69), Expect = 1.3
Identities = 10/39 (25%), Positives = 16/39 (41%)
Query: 270 ELLSPPILQLSEVNFEYVPGKPILTNVCLGATLESRICI 308
E SP IL +SE ++ G + + E I +
Sbjct: 43 EEKSPVILGVSEGAARHMTGFKTVVAMVKALIEEMNITV 81
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC,
cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo
sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B*
2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A*
2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A*
2zi7_B* 2zia_A* 3kfx_A* ...
Length = 263
Score = 30.2 bits (67), Expect = 1.3
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 305 RICIVGDNGAGKTTLLKII 323
+I I G+ AGK+T + I+
Sbjct: 26 KISIEGNIAAGKSTFVNIL 44
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD,
transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP:
c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Length = 252
Score = 30.2 bits (68), Expect = 1.3
Identities = 5/33 (15%), Positives = 14/33 (42%)
Query: 306 ICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR 338
I + G +GK+++ I+ ++ +
Sbjct: 25 IGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQ 57
>1ynb_A Hypothetical protein AF1432; structural genomics, PSI, protein
structure initiative, MIDW center for structural
genomics, MCSG; 1.76A {Archaeoglobus fulgidus} SCOP:
a.211.1.1 PDB: 1yoy_A
Length = 173
Score = 29.8 bits (66), Expect = 1.3
Identities = 13/94 (13%), Positives = 32/94 (34%), Gaps = 5/94 (5%)
Query: 124 AGLGFTPEMQKRATKHFSGGWRKMAIIWLENYLQNWPTTLLVVSHDRHFLDSVPTDIFHL 183
A ++ +R G R+ + W+E+ + V D + +
Sbjct: 79 ARTMDLHKIARRYVSCDEEGAREEQLSWMESKPDFSDVEVYV-----SDADKLELAFQGV 133
Query: 184 HSQRIDTYRGNYEAFDKIKTEKLKNQQREIEAQR 217
+ +Y + ++KT+ K R + ++
Sbjct: 134 EYSQQVSYAIRFAENVELKTDAAKEIYRVLMERK 167
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation,
GTP-binding domain, maturation enzyme, oxidoreductase;
2.99A {Thermotoga neapolitana}
Length = 423
Score = 30.4 bits (69), Expect = 1.4
Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 5/40 (12%)
Query: 306 ICIVGDNGAGKTTLLKIIMG----IISPTAGTRTVHRNLK 341
I + G GK++ + ++G I+S AGT T K
Sbjct: 37 IVVAGRRNVGKSSFMNALVGQNVSIVSDYAGT-TTDPVYK 75
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer,
immunology, signaling protein; HET: GDP; 1.95A {Mus
musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A*
1tq2_A*
Length = 413
Score = 30.1 bits (67), Expect = 1.4
Identities = 8/43 (18%), Positives = 16/43 (37%), Gaps = 9/43 (20%)
Query: 305 RICIVGDNGAGKTTLLKIIMGII---------SPTAGTRTVHR 338
+ + G+ G+GK++ + + GI T H
Sbjct: 71 NVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHP 113
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation,
ADP, nucleotide binding, CARD, apoptosis; HET: ADP;
2.21A {Homo sapiens}
Length = 591
Score = 30.2 bits (68), Expect = 1.5
Identities = 18/138 (13%), Positives = 41/138 (29%), Gaps = 18/138 (13%)
Query: 199 DKIKTEKL--KNQQREIEAQRMHREHVQKFIDTFRYNANRA------SSVQSKIKQL-ER 249
D + ++ +++ ++ + ++ I N + + + K L
Sbjct: 27 DHMISDGFLTISEEEKVRNEPTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYKDLAAL 86
Query: 250 LPELKPIEKEVEVVLKFPDTELLSPPILQLSEV---NFEYVPGKPILTNVCLGATLESR- 305
L + P+ +L V +V + L N + +
Sbjct: 87 LHDGIPVVSSSSGKDSVSGITSYVRTVLCEGGVPQRPVVFV-TRKKLVNAIQQKLSKLKG 145
Query: 306 ----ICIVGDNGAGKTTL 319
+ I G G GK+ L
Sbjct: 146 EPGWVTIHGMAGCGKSVL 163
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein,
ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP;
1.78A {Arabidopsis thaliana}
Length = 212
Score = 29.6 bits (67), Expect = 1.5
Identities = 23/72 (31%), Positives = 29/72 (40%), Gaps = 11/72 (15%)
Query: 306 ICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEA 365
VGD GKT +L PT TV N + + VD +NL L +
Sbjct: 12 CVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDN----FSANVAVDGQIVNL---GLWDT 64
Query: 366 AFPGKPQEEYRR 377
A G QE+Y R
Sbjct: 65 A--G--QEDYSR 72
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB);
structural genomics, PSI, protein structure initiative;
2.10A {Archaeoglobus fulgidus}
Length = 171
Score = 29.2 bits (65), Expect = 1.5
Identities = 11/52 (21%), Positives = 23/52 (44%), Gaps = 10/52 (19%)
Query: 306 ICIVGDNGAGKTTLL-KIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMN 356
+ IVG + +GKTTL+ +++ R L+ +H +++
Sbjct: 5 LSIVGTSDSGKTTLITRMM---------PILRERGLRVAVVKRHAHGDFEID 47
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome
condensation, condensin, SMC, N subunit, ABC-type
ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus
ducreyi} PDB: 3euk_A*
Length = 483
Score = 30.3 bits (67), Expect = 1.5
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 303 ESRICIVGDNGAGKTTLLKIIMGIISP 329
E + G NGAGK+T + + + P
Sbjct: 29 ELVTTLSGGNGAGKSTTMAGFVTALIP 55
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex,
transferase; HET: DTP; 2.80A {Homo sapiens} SCOP:
c.37.1.1
Length = 241
Score = 29.7 bits (66), Expect = 1.6
Identities = 7/19 (36%), Positives = 13/19 (68%)
Query: 305 RICIVGDNGAGKTTLLKII 323
R+ I G+ GK+T +K++
Sbjct: 4 RLSIEGNIAVGKSTFVKLL 22
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP
hydrolysis, structural genomics, structural genomics
consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP:
c.37.1.8
Length = 207
Score = 29.3 bits (66), Expect = 1.7
Identities = 23/72 (31%), Positives = 30/72 (41%), Gaps = 11/72 (15%)
Query: 306 ICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEA 365
+ +VGD GKT LL + P TV N Y + VD + L L +
Sbjct: 28 LVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFEN----YVADIEVDGKQVEL---ALWDT 80
Query: 366 AFPGKPQEEYRR 377
A G QE+Y R
Sbjct: 81 A--G--QEDYDR 88
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral
membrane protein, ATPase, ABC transporter, membrane
transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia
coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A*
3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Length = 381
Score = 29.8 bits (68), Expect = 1.9
Identities = 19/33 (57%), Positives = 24/33 (72%), Gaps = 2/33 (6%)
Query: 396 LSGGQKSRVAFARMCMAAPN-FLVLDEPTNHLD 427
LSGGQ+ RVA R +A P+ FL LDEP ++LD
Sbjct: 134 LSGGQRQRVAIGRTLVAEPSVFL-LDEPLSNLD 165
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning;
2.20A {Escherichia coli} SCOP: c.37.1.12
Length = 227
Score = 29.4 bits (65), Expect = 1.9
Identities = 9/36 (25%), Positives = 15/36 (41%)
Query: 308 IVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFG 343
+ G NGAGK+T + + + P + G
Sbjct: 32 LSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAG 67
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase,
hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB:
2oaq_1
Length = 511
Score = 29.7 bits (67), Expect = 2.0
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 298 LGATLESR--ICIVGDNGAGKTTLLKIIMGIISPTA 331
L +E + +VG+ +GKTT L IM I P A
Sbjct: 253 LWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDA 288
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding,
nucleoside kinase, nucleotide-binding; 2.50A {Homo
sapiens} PDB: 2uvq_A*
Length = 245
Score = 29.0 bits (65), Expect = 2.5
Identities = 7/33 (21%), Positives = 16/33 (48%)
Query: 306 ICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR 338
I + G +GK+T+ + IM ++ + +
Sbjct: 28 IGVSGGTASGKSTVCEKIMELLGQNEVEQRQRK 60
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P;
2.25A {Thermus thermophilus} PDB: 3asy_A*
Length = 211
Score = 28.7 bits (65), Expect = 2.7
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 306 ICIVGDNGAGKTTLLKIIMGIISP 329
I I G +GKTTL + + +
Sbjct: 9 IGIAGGTASGKTTLAQALARTLGE 32
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation,
cytoplasm, HOST- virus interaction, nucleotide-binding,
nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens}
PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A*
1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C*
3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C*
...
Length = 221
Score = 28.8 bits (65), Expect = 2.9
Identities = 9/14 (64%), Positives = 11/14 (78%)
Query: 308 IVGDNGAGKTTLLK 321
+VGD G GKTT +K
Sbjct: 20 LVGDGGTGKTTFVK 33
>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A
{Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4
d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*
Length = 643
Score = 29.4 bits (66), Expect = 3.0
Identities = 10/72 (13%), Positives = 24/72 (33%), Gaps = 3/72 (4%)
Query: 186 QRIDTYRG--NYEAFDKIKTEKLKNQQREIEAQRMHREHVQKFIDTFRYNANRASSVQSK 243
++ + + D + E + Q + Q++ E+ ++ N
Sbjct: 490 APMERFMQYKDLSTADDVNPEYILPWQGLVRLQKIMDEYAAGIATIYKTNEKMLQRALEL 549
Query: 244 IKQL-ERLPELK 254
+ L E L +L
Sbjct: 550 LAFLKEDLEKLA 561
>1knz_A NS34, NSP3, nonstructural RNA-binding protein 34; protein-ssRNA
complex, viral protein/RNA complex; 2.45A {Simian
rotavirus A} SCOP: e.34.1.1
Length = 164
Score = 28.6 bits (63), Expect = 3.0
Identities = 16/81 (19%), Positives = 33/81 (40%), Gaps = 2/81 (2%)
Query: 53 QEVVGDDTPAIDSVLECDTKRQNLLNREKTITQAINNGTADANMSTELTQVFAELEAIEA 112
Q++ D V++ + N + + TI QA+NN A + + ++
Sbjct: 40 QDIYSRVKNKFDFVMDDSGVKNNPIGKAITIDQALNNKFGSAIRNRNWLADTSRPAKLDE 99
Query: 113 DKAPARASVILAGLGFTPEMQ 133
D R ++L+ G +M+
Sbjct: 100 DVNKLR--MMLSSKGIDQKMR 118
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding,
GTP-binding, signaling Pro lipoprotein, prenylation;
HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B*
Length = 194
Score = 28.5 bits (64), Expect = 3.7
Identities = 9/15 (60%), Positives = 10/15 (66%)
Query: 306 ICIVGDNGAGKTTLL 320
I +VGD GKT LL
Sbjct: 26 IVVVGDGAVGKTCLL 40
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P;
hydrolase, type IV secretion, conjugation; 2.35A
{Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Length = 392
Score = 28.8 bits (64), Expect = 3.8
Identities = 6/19 (31%), Positives = 11/19 (57%)
Query: 306 ICIVGDNGAGKTTLLKIIM 324
I+ GAGK+ K+++
Sbjct: 38 WTILAKPGAGKSFTAKMLL 56
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 28.2 bits (62), Expect = 3.9
Identities = 9/55 (16%), Positives = 26/55 (47%), Gaps = 8/55 (14%)
Query: 196 EAFDKIKTEKLKNQ-QREIEAQRMHR-EHVQKFIDTFRYNANRASSVQSKIKQLE 248
+A K+ ++ + + ++++E + E V+K NR + ++ +Q +
Sbjct: 102 DAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKI-----NNRIAD-KAFYQQPD 150
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon
cuniculi}
Length = 218
Score = 28.4 bits (64), Expect = 4.2
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 306 ICIVGDNGAGKTTLLK 321
IC++GD G GKTT +
Sbjct: 14 ICLIGDGGVGKTTYIN 29
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid
herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A*
1p75_A*
Length = 334
Score = 28.5 bits (63), Expect = 4.9
Identities = 15/75 (20%), Positives = 29/75 (38%), Gaps = 12/75 (16%)
Query: 305 RICIVGDNGAGKTTLLKIIMGIISPTAGTRTVH------RN------LKFGYFSQHHVDQ 352
RI + G G GK+T +++ S + T R + Y +Q+ Q
Sbjct: 9 RIYLDGVYGIGKSTTGRVMASAASGGSPTLYFPEPMAYWRTLFETDVISGIYDTQNRKQQ 68
Query: 353 LDMNLRCVQLLEAAF 367
++ + L+ A +
Sbjct: 69 GNLAVDDAALITAHY 83
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the
strand order 23145, walker A motif, cholesterol
biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Length = 202
Score = 28.1 bits (62), Expect = 5.0
Identities = 13/79 (16%), Positives = 28/79 (35%), Gaps = 11/79 (13%)
Query: 306 ICIVGDNGAGKTTLLKIIMGIIS-PTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLE 364
+ G +GK + + + + + LK Y +H L +LL+
Sbjct: 14 LLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSGPLKEQYAQEH-------GLNFQRLLD 66
Query: 365 AAFPGKPQEEYRRQLGGFG 383
+E +R+ + +G
Sbjct: 67 T---STYKEAFRKDMIRWG 82
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed
alpha-beta fold, elongated beta-sheet, walker A motif,
P-loop structural motif; 1.90A {Escherichia coli} SCOP:
c.37.1.10 PDB: 1p9n_A
Length = 174
Score = 27.9 bits (61), Expect = 5.0
Identities = 11/44 (25%), Positives = 18/44 (40%), Gaps = 8/44 (18%)
Query: 306 ICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHH 349
+ +G GKTTLLK ++ + R ++ G H
Sbjct: 9 LAFAAWSGTGKTTLLKKLIPALC--------ARGIRPGLIKHTH 44
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL
helix motif, transcription regulator; 3.20A
{Streptococcus pneumoniae}
Length = 253
Score = 28.3 bits (62), Expect = 5.2
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 306 ICIVGDNGAGKTTLLKII 323
I + G +GAGKTT+ +I
Sbjct: 35 ILLGGQSGAGKTTIHRIK 52
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC,
coiled coil, GTP- binding, nucleotide-binding, immune
system; HET: GDP; 2.15A {Homo sapiens}
Length = 239
Score = 28.0 bits (62), Expect = 5.4
Identities = 11/42 (26%), Positives = 19/42 (45%), Gaps = 6/42 (14%)
Query: 303 ESRICIVGDNGAGKTTLLKIIMG------IISPTAGTRTVHR 338
+ RI +VG GAGK+ I+G + + T+ +
Sbjct: 29 QLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEK 70
>3m6n_A RPFF protein; enoyl-COA hydratase, lyase; 1.80A {Xanthomonas
campestris PV} PDB: 3m6m_A
Length = 305
Score = 28.2 bits (63), Expect = 5.9
Identities = 6/49 (12%), Positives = 13/49 (26%), Gaps = 2/49 (4%)
Query: 77 LNREKTITQAINNGTADANMSTELTQVFAELEAIEADKAPARASVILAG 125
++ + I + ++T L V+LA
Sbjct: 47 MHADLAINPGRA--CFSTRLVDDITGYQTNLGQRLNTAGVLAPHVVLAS 93
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A
{Sulfolobus acidocaldarius} SCOP: c.37.1.1
Length = 194
Score = 27.8 bits (61), Expect = 5.9
Identities = 6/21 (28%), Positives = 10/21 (47%)
Query: 304 SRICIVGDNGAGKTTLLKIIM 324
+ G G GK+T+L +
Sbjct: 2 KIGIVTGIPGVGKSTVLAKVK 22
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR,
protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 331
Score = 28.1 bits (62), Expect = 6.0
Identities = 5/25 (20%), Positives = 14/25 (56%)
Query: 306 ICIVGDNGAGKTTLLKIIMGIISPT 330
+ ++G GK+++ K++ + P
Sbjct: 2 VLLMGVRRCGKSSICKVVFHNMQPL 26
>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET:
BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1
Length = 341
Score = 28.2 bits (62), Expect = 6.0
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 305 RICIVGDNGAGKTTLLKIIM 324
RI + G G GKTT + +
Sbjct: 14 RIYLDGAYGIGKTTAAEEFL 33
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like
protein 1A, GTPase, membrane fission, motor Pro; HET:
GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Length = 360
Score = 27.9 bits (62), Expect = 6.5
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 305 RICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR 338
I +VG +GK+++L+ I+G G+ V R
Sbjct: 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTR 69
>2og2_A Putative signal recognition particle receptor; nucleotide-binding,
protein transport; 2.00A {Arabidopsis thaliana}
Length = 359
Score = 28.0 bits (63), Expect = 6.7
Identities = 10/13 (76%), Positives = 10/13 (76%)
Query: 306 ICIVGDNGAGKTT 318
I IVG NG GKTT
Sbjct: 160 IMIVGVNGGGKTT 172
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein
translocation, GTP-binding, nucleotide-binding, protein
transport; 1.75A {Arabidopsis thaliana}
Length = 302
Score = 27.9 bits (63), Expect = 6.8
Identities = 10/13 (76%), Positives = 10/13 (76%)
Query: 306 ICIVGDNGAGKTT 318
I IVG NG GKTT
Sbjct: 103 IMIVGVNGGGKTT 115
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure
initiative, PSI, SGPP structural genomics of pathogenic
protozoa consortium; HET: ADP; 1.70A {Leishmania major}
SCOP: c.37.1.1
Length = 184
Score = 27.4 bits (60), Expect = 6.9
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 305 RICIVGDNGAGKTTLLKII 323
I I G G GKT++ ++I
Sbjct: 12 NILITGTPGTGKTSMAEMI 30
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family;
helicase, MCM homolog, DNA replication, ATP-binding,
DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Length = 506
Score = 27.9 bits (62), Expect = 7.0
Identities = 13/93 (13%), Positives = 31/93 (33%), Gaps = 17/93 (18%)
Query: 244 IKQLERLPELKPIEKEVEVVLKFPDTELLSP------PILQLSEVNFEYVPGKPILTNVC 297
+ + + +PE+ P E+E + D + L+ P+ EV +L
Sbjct: 177 VHKKDPIPEVHPDPAELEEFRELADKDPLTTFARAIAPLPGAEEV-------GKMLALQL 229
Query: 298 LGATLESR----ICIVGDNGAGKTTLLKIIMGI 326
++ + + G L ++ +
Sbjct: 230 FSCVGKNSERLHVLLAGYPVVCSEILHHVLDHL 262
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE;
1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Length = 260
Score = 27.7 bits (61), Expect = 7.1
Identities = 11/42 (26%), Positives = 17/42 (40%), Gaps = 6/42 (14%)
Query: 303 ESRICIVGDNGAGKTTLLKIIMG------IISPTAGTRTVHR 338
E RI +VG G GK+ I+ + T+T +
Sbjct: 22 ELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSK 63
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG,
structural genomics, midwest center for structural
genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB:
3h0k_A
Length = 179
Score = 27.5 bits (61), Expect = 7.2
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 306 ICIVGDNGAGKTTLLKII 323
I I G G+GK+ K++
Sbjct: 4 ILITGMPGSGKSEFAKLL 21
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting,
simibi class GTPase, GTP-BIND membrane,
nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A
2xxa_B* 1fts_A
Length = 503
Score = 27.8 bits (62), Expect = 7.5
Identities = 9/13 (69%), Positives = 10/13 (76%)
Query: 306 ICIVGDNGAGKTT 318
I +VG NG GKTT
Sbjct: 296 ILMVGVNGVGKTT 308
>1csh_A Citrate synthase; lyase(OXO-acid); HET: AMX; 1.65A {Gallus gallus}
SCOP: a.103.1.1 PDB: 1amz_A* 1csi_A* 1csr_A* 1css_A*
1al6_A* 6csc_A* 2cts_A* 3enj_A 1cts_A 4cts_A 1csc_A*
2csc_A* 3csc_A* 4csc_A* 5csc_A 5cts_A* 6cts_A* 5csc_B
Length = 435
Score = 28.0 bits (63), Expect = 7.6
Identities = 7/31 (22%), Positives = 12/31 (38%)
Query: 204 EKLKNQQREIEAQRMHREHVQKFIDTFRYNA 234
E++ +E + HV +D F N
Sbjct: 103 EQVSWVSKEWAKRAALPSHVVTMLDNFPTNL 133
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS
protein structure initiative, PSI, joint center for
structu genomics; HET: CIT; 1.60A {Thermotoga maritima}
SCOP: a.24.13.1 c.37.1.10
Length = 306
Score = 27.5 bits (62), Expect = 7.7
Identities = 9/13 (69%), Positives = 10/13 (76%)
Query: 306 ICIVGDNGAGKTT 318
I +VG NG GKTT
Sbjct: 107 IMVVGVNGTGKTT 119
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain
cytoplasmic; motor protein, AAA+ protein, ASCE protein,
P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma
japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Length = 2695
Score = 27.9 bits (62), Expect = 9.0
Identities = 9/38 (23%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Query: 301 TLESRIC--IVGDNGAGKTTLLKIIMGIISPTAGTRTV 336
+++ +VG G GKT K ++ ++ G V
Sbjct: 919 MQKTQQALILVGKAGCGKTATWKTVIDAMAIFDGHANV 956
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding,
nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum
tepidum}
Length = 535
Score = 27.6 bits (61), Expect = 9.1
Identities = 11/23 (47%), Positives = 18/23 (78%)
Query: 303 ESRICIVGDNGAGKTTLLKIIMG 325
E ++ ++GD AGKT+LLK ++G
Sbjct: 41 EIKVHLIGDGMAGKTSLLKQLIG 63
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase,
protein-targeting, transport protein; HET: GDP; 1.97A
{Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Length = 328
Score = 27.6 bits (62), Expect = 9.4
Identities = 9/13 (69%), Positives = 10/13 (76%)
Query: 306 ICIVGDNGAGKTT 318
I VG NG+GKTT
Sbjct: 132 IMFVGFNGSGKTT 144
>2ia1_A BH3703 protein; unknown function, structural genomics, PSI, protein
structur initiative; 1.59A {Bacillus halodurans} SCOP:
d.359.1.1 PDB: 3i0t_A
Length = 178
Score = 26.8 bits (59), Expect = 9.5
Identities = 10/82 (12%), Positives = 27/82 (32%), Gaps = 4/82 (4%)
Query: 189 DTYRGNYEAFDKIKTEKLKNQQREIEAQRMHREHVQKFIDTFRYNANRASSVQSKI---- 244
+ Y + + + + +M KF F Y+ N + +++
Sbjct: 73 EKYNELSFCISDFRKDYAEAFGEPWMSFQMTFYASGKFNIDFYYDKNPFDTFLTRLAWQY 132
Query: 245 KQLERLPELKPIEKEVEVVLKF 266
+ +PE ++ + L+
Sbjct: 133 EHFGTIPEDSFYKETLNEYLEE 154
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1,
nicotinic acid riboside kinase activity, NAD
biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB:
2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Length = 207
Score = 27.1 bits (60), Expect = 9.7
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 306 ICIVGDNGAGKTTLLKIIM 324
I I G +GKTTL K +
Sbjct: 24 IGISGVTNSGKTTLAKNLQ 42
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.135 0.393
Gapped
Lambda K H
0.267 0.0727 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,697,893
Number of extensions: 410718
Number of successful extensions: 1306
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1266
Number of HSP's successfully gapped: 223
Length of query: 443
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 346
Effective length of database: 3,993,456
Effective search space: 1381735776
Effective search space used: 1381735776
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.5 bits)