Query psy2080
Match_columns 93
No_of_seqs 113 out of 558
Neff 6.8
Searched_HMMs 46136
Date Fri Aug 16 23:48:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2080.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2080hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3801|consensus 100.0 7.5E-33 1.6E-37 173.7 10.9 86 1-86 2-87 (94)
2 PF13232 Complex1_LYR_1: Compl 99.8 2E-20 4.3E-25 109.9 7.1 61 6-66 1-61 (61)
3 PF05347 Complex1_LYR: Complex 99.8 2E-18 4.4E-23 100.2 6.7 59 6-64 1-59 (59)
4 KOG4620|consensus 99.2 3.9E-11 8.4E-16 73.0 7.1 66 3-69 6-73 (80)
5 KOG3426|consensus 98.5 2.4E-07 5.3E-12 60.7 5.4 63 3-65 21-88 (124)
6 PF13233 Complex1_LYR_2: Compl 98.3 4.9E-06 1.1E-10 52.9 7.4 69 8-76 1-80 (104)
7 KOG3466|consensus 98.1 8.7E-06 1.9E-10 55.3 6.1 63 3-66 11-74 (157)
8 KOG4100|consensus 97.7 0.00054 1.2E-08 45.2 8.0 65 6-72 10-74 (125)
9 PF04716 ETC_C1_NDUFA5: ETC co 95.5 0.11 2.4E-06 30.1 6.2 52 4-55 3-55 (57)
10 PF09164 VitD-bind_III: Vitami 76.4 11 0.00024 22.6 4.8 39 19-58 3-41 (68)
11 PF06694 Plant_NMP1: Plant nuc 67.9 26 0.00057 26.9 6.3 61 1-71 250-316 (325)
12 PRK00499 rnpA ribonuclease P; 49.9 35 0.00075 21.8 3.8 24 21-44 47-70 (114)
13 KOG3365|consensus 41.3 1.1E+02 0.0025 20.8 6.7 61 5-65 50-120 (145)
14 PRK14865 rnpA ribonuclease P; 40.9 96 0.0021 19.8 5.4 24 21-44 54-77 (116)
15 COG0362 Gnd 6-phosphogluconate 38.8 1E+02 0.0022 24.9 5.5 46 27-72 367-412 (473)
16 TIGR02977 phageshock_pspA phag 38.5 1E+02 0.0023 21.8 5.2 37 33-69 5-47 (219)
17 TIGR00188 rnpA ribonuclease P 38.2 33 0.00072 21.5 2.3 25 20-44 49-73 (105)
18 PRK03459 rnpA ribonuclease P; 37.3 87 0.0019 20.4 4.3 24 21-44 57-80 (122)
19 KOG2653|consensus 37.2 85 0.0018 25.2 4.8 50 27-76 372-421 (487)
20 PRK10635 bacterioferritin; Pro 36.8 80 0.0017 21.4 4.2 32 6-37 95-126 (158)
21 PRK05629 hypothetical protein; 35.3 1.4E+02 0.0031 22.0 5.6 60 9-68 108-168 (318)
22 KOG4274|consensus 35.0 1.2E+02 0.0025 25.7 5.4 47 20-66 4-53 (742)
23 PF00825 Ribonuclease_P: Ribon 35.0 52 0.0011 20.6 2.9 26 20-45 50-76 (111)
24 PRK01903 rnpA ribonuclease P; 35.0 33 0.00072 22.8 2.0 26 20-45 58-84 (133)
25 PF08134 cIII: cIII protein fa 33.5 82 0.0018 17.1 3.0 17 49-65 24-40 (44)
26 PF15076 DUF4543: Domain of un 31.2 1.1E+02 0.0025 18.3 3.7 21 13-33 15-42 (75)
27 PF08657 DASH_Spc34: DASH comp 30.8 2.2E+02 0.0047 21.1 5.9 56 9-67 160-215 (259)
28 PRK00730 rnpA ribonuclease P; 30.2 52 0.0011 22.2 2.3 25 20-44 54-78 (138)
29 KOG3564|consensus 30.1 1.9E+02 0.0041 24.0 5.8 59 6-65 6-68 (604)
30 KOG2908|consensus 28.5 2.1E+02 0.0045 22.6 5.6 67 10-76 76-160 (380)
31 PRK00396 rnpA ribonuclease P; 28.1 61 0.0013 21.4 2.4 23 22-44 57-79 (130)
32 PF06565 DUF1126: Repeat of un 27.8 28 0.0006 17.8 0.5 14 79-92 11-24 (33)
33 KOG0810|consensus 27.7 1.2E+02 0.0027 22.9 4.2 54 6-59 123-179 (297)
34 cd01878 HflX HflX subfamily. 27.5 1.7E+02 0.0037 19.5 4.6 47 46-92 6-55 (204)
35 PRK00588 rnpA ribonuclease P; 27.3 58 0.0012 21.1 2.1 25 20-44 51-75 (118)
36 PRK04820 rnpA ribonuclease P; 26.6 1.6E+02 0.0035 19.8 4.3 21 24-44 61-81 (145)
37 PF04695 Pex14_N: Peroxisomal 26.4 84 0.0018 20.7 2.8 46 15-62 5-51 (136)
38 PRK14806 bifunctional cyclohex 25.4 1.1E+02 0.0024 25.3 3.9 47 38-84 257-308 (735)
39 PRK01313 rnpA ribonuclease P; 24.7 80 0.0017 20.9 2.5 25 20-44 55-79 (129)
40 PF06377 Adipokin_hormo: Adipo 24.4 71 0.0015 17.8 1.8 19 5-23 26-44 (48)
41 KOG0624|consensus 24.3 1.1E+02 0.0023 24.6 3.4 36 3-41 406-442 (504)
42 PRK00927 tryptophanyl-tRNA syn 23.6 2.6E+02 0.0057 21.1 5.4 36 32-69 285-320 (333)
43 PRK10698 phage shock protein P 23.6 2.3E+02 0.005 20.3 4.8 23 46-68 23-46 (222)
44 KOG2713|consensus 22.8 2E+02 0.0043 22.3 4.5 51 15-67 275-332 (347)
45 cd00179 SynN Syntaxin N-termin 22.4 2.2E+02 0.0048 18.2 4.4 32 27-58 111-142 (151)
46 PRK01492 rnpA ribonuclease P; 22.4 85 0.0018 20.3 2.2 20 25-44 60-79 (118)
47 TIGR01599 PYST-A Plasmodium yo 22.1 1.3E+02 0.0029 21.6 3.3 29 45-73 8-36 (208)
48 PF10273 WGG: Pre-rRNA-process 21.8 2E+02 0.0043 17.4 4.4 32 27-59 32-63 (82)
49 KOG0493|consensus 21.4 1.2E+02 0.0025 23.2 3.0 21 27-47 253-273 (342)
50 PRK12556 tryptophanyl-tRNA syn 21.4 3.1E+02 0.0067 20.9 5.4 35 32-68 286-320 (332)
51 KOG1547|consensus 21.3 81 0.0018 24.0 2.2 18 26-43 200-217 (336)
52 TIGR00754 bfr bacterioferritin 21.0 2.3E+02 0.0051 18.5 4.2 26 7-32 96-121 (157)
No 1
>KOG3801|consensus
Probab=100.00 E-value=7.5e-33 Score=173.67 Aligned_cols=86 Identities=52% Similarity=0.865 Sum_probs=83.0
Q ss_pred CCcchHHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCce
Q psy2080 1 MSVSKDMILKLYKALLRESSKFPAYNYRMYFLRRTREKFQSNKNVDNNEQISLLYNEGLKELEVLKRQVLISQLFKPDKL 80 (93)
Q Consensus 1 m~~~r~~Vl~LYR~llR~a~~~~~~n~r~y~~~~ir~~Fr~nk~~~Dp~~I~~ll~~g~~~L~~l~rq~~i~~~y~~~~~ 80 (93)
|.+++++|++|||.+||++++||+||||+||.+++|+.|++|++++||.+|..++++|+++|+.++||++|++||+.+++
T Consensus 2 ~~~sr~qvlsLyr~~lr~s~qfp~YNyReY~~RrtRD~Fr~Nkn~~Dp~e~~~l~~eakk~LevikRQ~ii~~lY~~~kl 81 (94)
T KOG3801|consen 2 QMVSRRQVLSLYRNLLRESKQFPQYNYREYFQRRTRDTFRANKNVCDPAEIKKLYKEAKKQLEVIKRQSIIGQLYPKDKL 81 (94)
T ss_pred CcccHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcce
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeecc
Q psy2080 81 VIETQM 86 (93)
Q Consensus 81 vve~~~ 86 (93)
|||..+
T Consensus 82 IvE~k~ 87 (94)
T KOG3801|consen 82 IVEVKK 87 (94)
T ss_pred eeeccc
Confidence 999543
No 2
>PF13232 Complex1_LYR_1: Complex1_LYR-like
Probab=99.83 E-value=2e-20 Score=109.93 Aligned_cols=61 Identities=56% Similarity=0.970 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHH
Q psy2080 6 DMILKLYKALLRESSKFPAYNYRMYFLRRTREKFQSNKNVDNNEQISLLYNEGLKELEVLK 66 (93)
Q Consensus 6 ~~Vl~LYR~llR~a~~~~~~n~r~y~~~~ir~~Fr~nk~~~Dp~~I~~ll~~g~~~L~~l~ 66 (93)
++||+|||++||+|+.||++++++|++++||+.|+.|++++||++|+.+++.|++.|+.|+
T Consensus 1 ~~vL~LYR~lLR~~~~~~~~~~r~~~~~~ir~~Fr~~~~~td~~~i~~~l~~~~~~L~~l~ 61 (61)
T PF13232_consen 1 QQVLSLYRQLLREASKFPDYNFRSYFRRRIRDRFRRNKNVTDPEKIAKLLKEGRKELELLR 61 (61)
T ss_pred ChHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 4799999999999999999999999999999999999999999999999999999999874
No 3
>PF05347 Complex1_LYR: Complex 1 protein (LYR family); InterPro: IPR008011 This family of short proteins includes proteins from the NADH-ubiquinone oxidoreductase complex I. The family includes the B14 subunit from bovine NADH-ubiquinone oxidoreductase B14 subunit Q02366 from SWISSPROT, and the B22 subunit from the human enzyme Q9Y6M9 from SWISSPROT. The family has been named LYR after a highly conserved tripeptide motif close to the N terminus of these proteins. Members of this family also found in yeast which do contain this complex. In these organisms they are believed to be be required for iron-sulphur custer biogenesis.
Probab=99.76 E-value=2e-18 Score=100.20 Aligned_cols=59 Identities=36% Similarity=0.615 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHH
Q psy2080 6 DMILKLYKALLRESSKFPAYNYRMYFLRRTREKFQSNKNVDNNEQISLLYNEGLKELEV 64 (93)
Q Consensus 6 ~~Vl~LYR~llR~a~~~~~~n~r~y~~~~ir~~Fr~nk~~~Dp~~I~~ll~~g~~~L~~ 64 (93)
++||+|||++||+++.||+++.+.+++..||++|++|++++||..|+.+++.|+..|++
T Consensus 1 q~vl~LYR~lLR~~~~~~~~~~r~~~~~~iR~~Fr~n~~~~d~~~I~~~l~~g~~~l~~ 59 (59)
T PF05347_consen 1 QRVLSLYRQLLRAARSFPDDSEREYIRAEIRQEFRKNRNETDPEKIEELLKKGEEELEM 59 (59)
T ss_pred ChHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcC
Confidence 47999999999999999998899999999999999999999999999999999998863
No 4
>KOG4620|consensus
Probab=99.25 E-value=3.9e-11 Score=72.96 Aligned_cols=66 Identities=20% Similarity=0.333 Sum_probs=57.7
Q ss_pred cchHHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHHHhhcCCC--CCHHHHHHHHHHHHHHHHHHHHHH
Q psy2080 3 VSKDMILKLYKALLRESSKFPAYNYRMYFLRRTREKFQSNKNV--DNNEQISLLYNEGLKELEVLKRQV 69 (93)
Q Consensus 3 ~~r~~Vl~LYR~llR~a~~~~~~n~r~y~~~~ir~~Fr~nk~~--~Dp~~I~~ll~~g~~~L~~l~rq~ 69 (93)
..+++||+|||.+||+|+..|..+ ..-|...|+++|++|.++ .|.-.|+.|+..|+++++.+.+.-
T Consensus 6 gLQrqVlhlYR~~lraa~~Kp~~~-~~~~m~fvh~EFrk~~~lpr~Df~~IEhLlRvG~rq~~~~s~pe 73 (80)
T KOG4620|consen 6 GLQRQVLHLYRDLLRAARGKPGAE-ARRWMAFVHAEFRKHAGLPRSDFLRIEHLLRVGRRQLQLLSSPE 73 (80)
T ss_pred HHHHHHHHHHHHHHHHhcCCCchH-HHHHHHHHHHHHHHhcCCcHhHHHHHHHHHHHhHHHHHHhcCcc
Confidence 457899999999999999999755 445677999999999998 588999999999999999887653
No 5
>KOG3426|consensus
Probab=98.52 E-value=2.4e-07 Score=60.75 Aligned_cols=63 Identities=29% Similarity=0.488 Sum_probs=53.6
Q ss_pred cchHHHHHHHHHHHHHhhCC-CCchh----HHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHH
Q psy2080 3 VSKDMILKLYKALLRESSKF-PAYNY----RMYFLRRTREKFQSNKNVDNNEQISLLYNEGLKELEVL 65 (93)
Q Consensus 3 ~~r~~Vl~LYR~llR~a~~~-~~~n~----r~y~~~~ir~~Fr~nk~~~Dp~~I~~ll~~g~~~L~~l 65 (93)
..|..|+.|||...|..=.+ -+|+. -+.++..||+.|++|.++|||.-|..|+-+|..+|..+
T Consensus 21 EARrrvl~~yra~~R~iP~~~~dy~L~dm~~~~~R~~ir~qf~kn~hvTD~rViDlLV~kg~~elkei 88 (124)
T KOG3426|consen 21 EARRRVLDLYRAWYRSIPTIVDDYNLQDMTVSQLRDKIREQFRKNAHVTDPRVIDLLVIKGMEELKEI 88 (124)
T ss_pred HHHHHHHHHHHHHHHhcChHHHhcCCcccCHHHHHHHHHHHHHhcCCcCCchhhhHHHHhhHHHHHHH
Confidence 46899999999999987552 34443 46789999999999999999999999999999988765
No 6
>PF13233 Complex1_LYR_2: Complex1_LYR-like
Probab=98.30 E-value=4.9e-06 Score=52.91 Aligned_cols=69 Identities=25% Similarity=0.335 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHhhCCCCchhH-------HHHHHHH----HHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy2080 8 ILKLYKALLRESSKFPAYNYR-------MYFLRRT----REKFQSNKNVDNNEQISLLYNEGLKELEVLKRQVLISQLFK 76 (93)
Q Consensus 8 Vl~LYR~llR~a~~~~~~n~r-------~y~~~~i----r~~Fr~nk~~~Dp~~I~~ll~~g~~~L~~l~rq~~i~~~y~ 76 (93)
|++|||.+||+.+.++..... ..+..+| +++|+.+++.+++......+...+.-+.+|+.|.....+..
T Consensus 1 V~~lYR~lLRel~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ef~~~~~~~~~~~~~~~~~~~~~y~~~L~~qr~y~eL~e 80 (104)
T PF13233_consen 1 VLSLYRSLLRELRRYPRRSKIHQLKAPRSPGDQYVLEQARAEFRRHKSANDEEEAQEFLQEWENYATFLKNQREYKELLE 80 (104)
T ss_pred ChHHHHHHHHHHHhhcchhhhhhhhchhHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 689999999999998753211 5677788 99999999999999999999999999999999987665543
No 7
>KOG3466|consensus
Probab=98.14 E-value=8.7e-06 Score=55.28 Aligned_cols=63 Identities=25% Similarity=0.338 Sum_probs=54.6
Q ss_pred cchHHHHHHHHHHHHHhhCCCC-chhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHH
Q psy2080 3 VSKDMILKLYKALLRESSKFPA-YNYRMYFLRRTREKFQSNKNVDNNEQISLLYNEGLKELEVLK 66 (93)
Q Consensus 3 ~~r~~Vl~LYR~llR~a~~~~~-~n~r~y~~~~ir~~Fr~nk~~~Dp~~I~~ll~~g~~~L~~l~ 66 (93)
+.+++|..|||++||.--.|-. .|.-.|+.-.||..|.+|++ .|..++..||+.|+++|-..+
T Consensus 11 shkqkV~rLYKRaLR~lenWy~~rn~yRy~ac~~RARFden~~-kD~~k~~~LLa~ge~E~w~~r 74 (157)
T KOG3466|consen 11 SHKQKVRRLYKRALRDLENWYVHRNIYRYQACIIRARFDENDE-KDVDKAIRLLAEGERELWEWR 74 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhhhhhh-hhHHHHHHHHHHHHHHHHhhc
Confidence 4689999999999999998754 44556788899999999998 999999999999999886654
No 8
>KOG4100|consensus
Probab=97.65 E-value=0.00054 Score=45.18 Aligned_cols=65 Identities=23% Similarity=0.253 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2080 6 DMILKLYKALLRESSKFPAYNYRMYFLRRTREKFQSNKNVDNNEQISLLYNEGLKELEVLKRQVLIS 72 (93)
Q Consensus 6 ~~Vl~LYR~llR~a~~~~~~n~r~y~~~~ir~~Fr~nk~~~Dp~~I~~ll~~g~~~L~~l~rq~~i~ 72 (93)
..|.-|||++||.-+-.|. ..|.-=-..++++|+.|+++ +|..+.-++.+=+....+|..|.-++
T Consensus 10 ~rvrlLYkriLrlHr~lp~-~~R~lGD~YVkdEFrrHk~v-np~~~~~FlteW~~Ya~~l~qql~~~ 74 (125)
T KOG4100|consen 10 PRVRLLYKRILRLHRGLPA-ELRALGDQYVKDEFRRHKTV-NPLEAQGFLTEWERYAVALSQQLSSA 74 (125)
T ss_pred chHHHHHHHHHHHHccCCh-HHHHHHHHHHHHHHHHhccC-ChHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 4566699999999999996 56666667899999999999 89999999998888887777765543
No 9
>PF04716 ETC_C1_NDUFA5: ETC complex I subunit conserved region; InterPro: IPR006806 This is a family of eukaryotic NADH-ubiquinone oxidoreductase subunits (1.6.5.3 from EC) (1.6.99.3 from EC) from complex I of the electron transport chain initially identified in Neurospora crassa as a 29.9 kDa protein. The conserved region is found at the N terminus of the member proteins [].; GO: 0016651 oxidoreductase activity, acting on NADH or NADPH, 0022904 respiratory electron transport chain, 0005743 mitochondrial inner membrane
Probab=95.47 E-value=0.11 Score=30.09 Aligned_cols=52 Identities=21% Similarity=0.395 Sum_probs=46.1
Q ss_pred chHHHHHHHHHHHHHhhCCCC-chhHHHHHHHHHHHHhhcCCCCCHHHHHHHH
Q psy2080 4 SKDMILKLYKALLRESSKFPA-YNYRMYFLRRTREKFQSNKNVDNNEQISLLY 55 (93)
Q Consensus 4 ~r~~Vl~LYR~llR~a~~~~~-~n~r~y~~~~ir~~Fr~nk~~~Dp~~I~~ll 55 (93)
.+.....||.++|+.-..+|. ..||.+.-.-++.-+.-.....|.++|+..|
T Consensus 3 pr~~L~~lY~~~L~~L~~~P~~a~YR~~tE~it~~Rl~iv~~~~d~~~iE~~i 55 (57)
T PF04716_consen 3 PREALISLYNKTLKALKKIPEDAAYRQYTEAITKHRLKIVEEEEDIEKIEKKI 55 (57)
T ss_pred hHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHccccHHHHHHHh
Confidence 467889999999999999995 5699999999999999998899999998765
No 10
>PF09164 VitD-bind_III: Vitamin D binding protein, domain III; InterPro: IPR015247 This domain is predominantly found in Vitamin D binding proteins, and adopts a multihelical structure. It is required for formation of an actin 'clamp', allowing the protein to bind to actin []. ; PDB: 1MA9_A 1KW2_A 1KXP_D 1J7E_A 1J78_A 1LOT_A.
Probab=76.44 E-value=11 Score=22.57 Aligned_cols=39 Identities=10% Similarity=0.268 Sum_probs=29.0
Q ss_pred hhCCCCchhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q psy2080 19 SSKFPAYNYRMYFLRRTREKFQSNKNVDNNEQISLLYNEG 58 (93)
Q Consensus 19 a~~~~~~n~r~y~~~~ir~~Fr~nk~~~Dp~~I~~ll~~g 58 (93)
+-+|...+|-+| +.++.+.|+....-..|.+|+.++++-
T Consensus 3 C~dYse~tFtEy-KKrL~e~l~~k~P~at~~~l~~lve~R 41 (68)
T PF09164_consen 3 CADYSENTFTEY-KKRLAERLRAKLPDATPTELKELVEKR 41 (68)
T ss_dssp TTTTTTS-HHHH-HHHHHHHHHHH-TTS-HHHHHHHHHHH
T ss_pred chhhhhccHHHH-HHHHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 345666667666 779999999999999999999998753
No 11
>PF06694 Plant_NMP1: Plant nuclear matrix protein 1 (NMP1); InterPro: IPR010604 This family consists of several plant specific nuclear matrix protein 1 (NMP1) sequences. Nuclear Matrix Protein 1 is a ubiquitously expressed 36 kDa protein, which has no homologues in animals and fungi, but is highly conserved among flowering and non-flowering plants. NMP1 is located both in the cytoplasm and nucleus and that the nuclear fraction is associated with the nuclear matrix. NMP1 is a candidate for a plant-specific structural protein with a function both in the nucleus and cytoplasm [].
Probab=67.87 E-value=26 Score=26.91 Aligned_cols=61 Identities=21% Similarity=0.345 Sum_probs=44.3
Q ss_pred CCcchHHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHHHhhcCC------CCCHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2080 1 MSVSKDMILKLYKALLRESSKFPAYNYRMYFLRRTREKFQSNKN------VDNNEQISLLYNEGLKELEVLKRQVLI 71 (93)
Q Consensus 1 m~~~r~~Vl~LYR~llR~a~~~~~~n~r~y~~~~ir~~Fr~nk~------~~Dp~~I~~ll~~g~~~L~~l~rq~~i 71 (93)
|+|..+.|+.+|..+++....+. .+|+.+..-.. ...|.-+.+++.+|++.|..|.|-..|
T Consensus 250 LGPAa~Rlle~y~~l~klL~nL~----------~lr~Sh~ai~~gs~~t~s~e~~s~~~ivs~~e~al~~lnr~l~i 316 (325)
T PF06694_consen 250 LGPAANRLLELYKMLLKLLGNLA----------TLRDSHAAIAAGSSPTTSDEPSSVTQIVSECETALTQLNRSLAI 316 (325)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHhcCCCccccCCCccHHHHHHHHHHHHHHHHhhhHH
Confidence 34667899999999999886654 34444443322 234678899999999999999987654
No 12
>PRK00499 rnpA ribonuclease P; Reviewed
Probab=49.95 E-value=35 Score=21.76 Aligned_cols=24 Identities=29% Similarity=0.236 Sum_probs=18.5
Q ss_pred CCCCchhHHHHHHHHHHHHhhcCC
Q psy2080 21 KFPAYNYRMYFLRRTREKFQSNKN 44 (93)
Q Consensus 21 ~~~~~n~r~y~~~~ir~~Fr~nk~ 44 (93)
++....-|..++|.+|+.|+.+.+
T Consensus 47 KvgkAV~RNriKR~lRE~~R~~~~ 70 (114)
T PRK00499 47 KVGNAVVRNRIKRLIRESFRELKD 70 (114)
T ss_pred ccCchhhHhHHHHHHHHHHHHhhh
Confidence 344445688899999999999876
No 13
>KOG3365|consensus
Probab=41.32 E-value=1.1e+02 Score=20.84 Aligned_cols=61 Identities=20% Similarity=0.277 Sum_probs=43.7
Q ss_pred hHHHHHHHHHHHHHhhCCCC-chhHHHHHHHHHHHHhhcCCCCCHHHHH---------HHHHHHHHHHHHH
Q psy2080 5 KDMILKLYKALLRESSKFPA-YNYRMYFLRRTREKFQSNKNVDNNEQIS---------LLYNEGLKELEVL 65 (93)
Q Consensus 5 r~~Vl~LYR~llR~a~~~~~-~n~r~y~~~~ir~~Fr~nk~~~Dp~~I~---------~ll~~g~~~L~~l 65 (93)
.+.+.-||-.+|..-.+.|. -.||.|...-.++...-.+...|-+.++ ..+.++..+|.+.
T Consensus 50 ~~rl~~ly~kil~~~eqIpkn~ayRk~Tesit~~kLa~~k~E~d~K~ledql~gGqIEE~i~qa~~el~m~ 120 (145)
T KOG3365|consen 50 HERLRDLYTKILDVLEQIPKNAAYRKYTESITNQKLAMLKAEPDVKKLEDQLQGGQIEEVIEQAEAELNMG 120 (145)
T ss_pred HHHHHHHHHHhHHHHHHcchhhhhhHHHHHHHHHHHHHHHcchHHHHHHHHhcCCchHHHHHHHHHHHHHH
Confidence 56778899999999999984 4488888877777776666666666554 4555555555543
No 14
>PRK14865 rnpA ribonuclease P; Provisional
Probab=40.86 E-value=96 Score=19.80 Aligned_cols=24 Identities=29% Similarity=0.216 Sum_probs=18.4
Q ss_pred CCCCchhHHHHHHHHHHHHhhcCC
Q psy2080 21 KFPAYNYRMYFLRRTREKFQSNKN 44 (93)
Q Consensus 21 ~~~~~n~r~y~~~~ir~~Fr~nk~ 44 (93)
++....-|..++|.+|+.|+.+.+
T Consensus 54 Kvg~AV~RNRiKR~lRE~~R~~~~ 77 (116)
T PRK14865 54 KVGNAVVRNRIKRLVREFYRLNKS 77 (116)
T ss_pred ccCcchhHHHHHHHHHHHHHHhhc
Confidence 344445788899999999998766
No 15
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=38.81 E-value=1e+02 Score=24.90 Aligned_cols=46 Identities=20% Similarity=0.191 Sum_probs=30.8
Q ss_pred hHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2080 27 YRMYFLRRTREKFQSNKNVDNNEQISLLYNEGLKELEVLKRQVLIS 72 (93)
Q Consensus 27 ~r~y~~~~ir~~Fr~nk~~~Dp~~I~~ll~~g~~~L~~l~rq~~i~ 72 (93)
.|.-|++.|++.|++|.++.+----..+....++...-|++-+...
T Consensus 367 IRs~FL~~I~~af~~~p~l~nLl~~pyF~~~~~~~~~~~R~vV~~a 412 (473)
T COG0362 367 IRSKFLDKITDAFDENPELANLLLAPYFKSILEEYQQSLRRVVAYA 412 (473)
T ss_pred ehHHHHHHHHHHHhcCcchhhhhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 6889999999999999887755443444444455555555544433
No 16
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=38.46 E-value=1e+02 Score=21.78 Aligned_cols=37 Identities=24% Similarity=0.266 Sum_probs=26.2
Q ss_pred HHHHHHHhhcCC-----CCCHH-HHHHHHHHHHHHHHHHHHHH
Q psy2080 33 RRTREKFQSNKN-----VDNNE-QISLLYNEGLKELEVLKRQV 69 (93)
Q Consensus 33 ~~ir~~Fr~nk~-----~~Dp~-~I~~ll~~g~~~L~~l~rq~ 69 (93)
.++++-|+.|-| ..||. -|+.++.+.++.|..+++..
T Consensus 5 ~Rl~~iv~a~~n~~~dk~EDP~~~l~q~irem~~~l~~ar~~l 47 (219)
T TIGR02977 5 SRFADIVNSNLNALLDKAEDPEKMIRLIIQEMEDTLVEVRTTS 47 (219)
T ss_pred HHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555555544 35898 89999999998888877653
No 17
>TIGR00188 rnpA ribonuclease P protein component, eubacterial. The yeast mitochondrial RNase P protein component gene RPM2 has no obvious sequence similarity to rnpA, but resembles eukaryotic nuclear RNase P instead.
Probab=38.25 E-value=33 Score=21.53 Aligned_cols=25 Identities=24% Similarity=0.201 Sum_probs=19.7
Q ss_pred hCCCCchhHHHHHHHHHHHHhhcCC
Q psy2080 20 SKFPAYNYRMYFLRRTREKFQSNKN 44 (93)
Q Consensus 20 ~~~~~~n~r~y~~~~ir~~Fr~nk~ 44 (93)
+++.....|..++|.+|+.|+.+.+
T Consensus 49 KK~g~AV~RNriKR~lRe~~R~~~~ 73 (105)
T TIGR00188 49 KKVKNAVERNRIKRLIREVFRERQE 73 (105)
T ss_pred cccCchhHHHHHHHHHHHHHHHhhc
Confidence 3444556788999999999999876
No 18
>PRK03459 rnpA ribonuclease P; Reviewed
Probab=37.31 E-value=87 Score=20.37 Aligned_cols=24 Identities=17% Similarity=0.011 Sum_probs=18.7
Q ss_pred CCCCchhHHHHHHHHHHHHhhcCC
Q psy2080 21 KFPAYNYRMYFLRRTREKFQSNKN 44 (93)
Q Consensus 21 ~~~~~n~r~y~~~~ir~~Fr~nk~ 44 (93)
+..+..-|.-.+|.+|+.|+.+.+
T Consensus 57 KvG~AV~RNRiKR~lRe~~R~~~~ 80 (122)
T PRK03459 57 AVGNAVIRHRVSRRLRHICADIVD 80 (122)
T ss_pred eccchhHHHHHHHHHHHHHHHhhh
Confidence 344445688899999999999876
No 19
>KOG2653|consensus
Probab=37.22 E-value=85 Score=25.18 Aligned_cols=50 Identities=18% Similarity=0.193 Sum_probs=32.0
Q ss_pred hHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy2080 27 YRMYFLRRTREKFQSNKNVDNNEQISLLYNEGLKELEVLKRQVLISQLFK 76 (93)
Q Consensus 27 ~r~y~~~~ir~~Fr~nk~~~Dp~~I~~ll~~g~~~L~~l~rq~~i~~~y~ 76 (93)
.|.-|+..|++.|++|.++.|-.-=.++-+...+.-+-|+|.+...-.+.
T Consensus 372 IRsvfL~~I~~a~~~~p~l~nll~d~fF~~~v~~~q~~wr~vV~~a~~~g 421 (487)
T KOG2653|consen 372 IRSVFLDRIKKAYQRNPDLANLLLDPFFAKAVEEAQDSWRRVVALAVEAG 421 (487)
T ss_pred eeHHHHHHHHHHHhcCccHhhhccCHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 67889999999999999976543223333333444455666655555443
No 20
>PRK10635 bacterioferritin; Provisional
Probab=36.83 E-value=80 Score=21.41 Aligned_cols=32 Identities=9% Similarity=-0.026 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHhhCCCCchhHHHHHHHHHH
Q psy2080 6 DMILKLYKALLRESSKFPAYNYRMYFLRRTRE 37 (93)
Q Consensus 6 ~~Vl~LYR~llR~a~~~~~~n~r~y~~~~ir~ 37 (93)
..++.+|+.+++.|..-.|+.-++.|..-+.+
T Consensus 95 ~~ai~~y~e~i~~a~~~~D~~s~~ll~~iL~d 126 (158)
T PRK10635 95 LEGAKDLREAIAYADSVHDYVSRDMMIEILAD 126 (158)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 46788888888888877776666665544443
No 21
>PRK05629 hypothetical protein; Validated
Probab=35.33 E-value=1.4e+02 Score=22.01 Aligned_cols=60 Identities=10% Similarity=-0.030 Sum_probs=45.2
Q ss_pred HHHHHHHHHHhhCCCC-chhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy2080 9 LKLYKALLRESSKFPA-YNYRMYFLRRTREKFQSNKNVDNNEQISLLYNEGLKELEVLKRQ 68 (93)
Q Consensus 9 l~LYR~llR~a~~~~~-~n~r~y~~~~ir~~Fr~nk~~~Dp~~I~~ll~~g~~~L~~l~rq 68 (93)
-++|+.+-+.|.-++. .-....+.+||++.|++..-.-+++.++.|+.....++..+...
T Consensus 108 kk~~K~l~k~~~~ve~~~~~~~~l~~wi~~~~~~~g~~i~~~A~~~L~~~~g~dl~~l~~E 168 (318)
T PRK05629 108 KSMVPKLEKIAVVHEAAKLKPRERPGWVTQEFKNHGVRPTPDVVHALLEGVGSDLRELASA 168 (318)
T ss_pred hHHHHHHHhcceEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHCccHHHHHHH
Confidence 4577777666654331 22356778899999999877789999999999988888877654
No 22
>KOG4274|consensus
Probab=35.04 E-value=1.2e+02 Score=25.70 Aligned_cols=47 Identities=15% Similarity=0.348 Sum_probs=35.1
Q ss_pred hCCCCchhHHHHHHHHHHHHhhcCCC--CCHHHH-HHHHHHHHHHHHHHH
Q psy2080 20 SKFPAYNYRMYFLRRTREKFQSNKNV--DNNEQI-SLLYNEGLKELEVLK 66 (93)
Q Consensus 20 ~~~~~~n~r~y~~~~ir~~Fr~nk~~--~Dp~~I-~~ll~~g~~~L~~l~ 66 (93)
.+|++..||+....+|.++.++|.-- .|.... ++.+.+++..=|+|.
T Consensus 4 eDW~S~kFRq~vIsried~l~~n~q~~~k~a~~mE~hVF~K~~tkDEYl~ 53 (742)
T KOG4274|consen 4 EDWPSPKFRQHVISRIEDELRKNGQAHSKSAKDMESHVFLKAKTKDEYLS 53 (742)
T ss_pred cccccHHHHHHHHHHhhhhhhhhhhccCcchHHHHHHHHHhhhhHHHHHH
Confidence 46999999999999999999999754 344443 345667766666665
No 23
>PF00825 Ribonuclease_P: Ribonuclease P; InterPro: IPR000100 Ribonuclease P (3.1.26.5 from EC) (RNase P) [, , ] is a site specific endonuclease that generates mature tRNAs by catalysing the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. In bacteria RNase P is known to be composed of two components: a large RNA (about 400 base pairs) encoded by rnpB, and a small protein (119 to 133 amino acids) encoded by rnpA. The RNA moiety of RNase P carries the catalytic activity; the protein component plays an auxiliary, but essential, role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. The sequence of rnpA is not highly conserved, however there is, in the central part of the protein, a conserved basic region.; GO: 0000049 tRNA binding, 0004526 ribonuclease P activity, 0008033 tRNA processing; PDB: 1D6T_A 1A6F_A 2LJP_A 1NZ0_C 3Q1Q_A 3Q1R_A.
Probab=35.02 E-value=52 Score=20.63 Aligned_cols=26 Identities=35% Similarity=0.272 Sum_probs=20.3
Q ss_pred hCCCC-chhHHHHHHHHHHHHhhcCCC
Q psy2080 20 SKFPA-YNYRMYFLRRTREKFQSNKNV 45 (93)
Q Consensus 20 ~~~~~-~n~r~y~~~~ir~~Fr~nk~~ 45 (93)
+++.. ...|..++|.+|+.|+.+.+.
T Consensus 50 KK~gk~AV~RNriKR~lRe~~R~~~~~ 76 (111)
T PF00825_consen 50 KKVGKRAVKRNRIKRRLREAFRLNKPE 76 (111)
T ss_dssp STTSS-HHHHHHHHHHHHHHHHHCTTT
T ss_pred CccccchhHHHHHHHHHHHHHHHHHhh
Confidence 34444 557889999999999999874
No 24
>PRK01903 rnpA ribonuclease P; Reviewed
Probab=35.00 E-value=33 Score=22.78 Aligned_cols=26 Identities=31% Similarity=0.341 Sum_probs=20.7
Q ss_pred hC-CCCchhHHHHHHHHHHHHhhcCCC
Q psy2080 20 SK-FPAYNYRMYFLRRTREKFQSNKNV 45 (93)
Q Consensus 20 ~~-~~~~n~r~y~~~~ir~~Fr~nk~~ 45 (93)
++ +....-|..++|.+|+.|+.|++.
T Consensus 58 KK~~g~AV~RNRiKR~lREa~R~~~~~ 84 (133)
T PRK01903 58 KKRVPRAVKRNRIKRLMREAYRLEKHV 84 (133)
T ss_pred cccCCchhhhhHHHHHHHHHHHHhHhh
Confidence 44 555567889999999999998873
No 25
>PF08134 cIII: cIII protein family; InterPro: IPR012995 This family consists of the CIII family of regulatory proteins. The lambda CIII protein has 54 amino acids and it forms an amphipathic helix within its amino acid sequence. Lambda CIII stabilises the lambda CII protein and the host sigma factor 32, responsible for transcribing genes of the heat shock regulon [].
Probab=33.53 E-value=82 Score=17.07 Aligned_cols=17 Identities=35% Similarity=0.448 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy2080 49 EQISLLYNEGLKELEVL 65 (93)
Q Consensus 49 ~~I~~ll~~g~~~L~~l 65 (93)
..|+.||..+.++|+.|
T Consensus 24 kr~rrLIRaa~k~leal 40 (44)
T PF08134_consen 24 KRIRRLIRAARKQLEAL 40 (44)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 46677777777777765
No 26
>PF15076 DUF4543: Domain of unknown function (DUF4543)
Probab=31.15 E-value=1.1e+02 Score=18.33 Aligned_cols=21 Identities=43% Similarity=0.702 Sum_probs=15.4
Q ss_pred HHHHHHhhC-------CCCchhHHHHHH
Q psy2080 13 KALLRESSK-------FPAYNYRMYFLR 33 (93)
Q Consensus 13 R~llR~a~~-------~~~~n~r~y~~~ 33 (93)
+++||+-++ ||+...|+|...
T Consensus 15 KqlLRsrR~dr~~K~GfpdepmrE~ml~ 42 (75)
T PF15076_consen 15 KQLLRSRRQDRPRKPGFPDEPMREYMLH 42 (75)
T ss_pred HHHHHHHHhcCCCCCCCCcchHHHHHHH
Confidence 667777765 788778888754
No 27
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=30.83 E-value=2.2e+02 Score=21.12 Aligned_cols=56 Identities=16% Similarity=0.169 Sum_probs=38.1
Q ss_pred HHHHHHHHHHhhCCCCchhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHH
Q psy2080 9 LKLYKALLRESSKFPAYNYRMYFLRRTREKFQSNKNVDNNEQISLLYNEGLKELEVLKR 67 (93)
Q Consensus 9 l~LYR~llR~a~~~~~~n~r~y~~~~ir~~Fr~nk~~~Dp~~I~~ll~~g~~~L~~l~r 67 (93)
=.|.+.+...+..||...+++.+. ..|..|....+ .-..++.-+++.+.+|+.+.+
T Consensus 160 evLL~~ae~L~~vYP~~ga~eki~-~Lr~~y~~l~~--~i~~lE~~VaeQ~~qL~~~n~ 215 (259)
T PF08657_consen 160 EVLLRGAEKLCNVYPLPGAREKIA-ALRQRYNQLSN--SIAYLEAEVAEQEAQLERMNR 215 (259)
T ss_pred HHHHHHHHHHHHhCCChHHHHHHH-HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhc
Confidence 378899999999999876665543 55666655543 345667777777777766653
No 28
>PRK00730 rnpA ribonuclease P; Reviewed
Probab=30.24 E-value=52 Score=22.23 Aligned_cols=25 Identities=32% Similarity=0.420 Sum_probs=19.6
Q ss_pred hCCCCchhHHHHHHHHHHHHhhcCC
Q psy2080 20 SKFPAYNYRMYFLRRTREKFQSNKN 44 (93)
Q Consensus 20 ~~~~~~n~r~y~~~~ir~~Fr~nk~ 44 (93)
+++.+..-|..++|.+|+.|+.+.+
T Consensus 54 KKvg~AV~RNRiKR~lREafR~~~~ 78 (138)
T PRK00730 54 KKFGKAHQRNRFKRIVREAFRHVRH 78 (138)
T ss_pred cccccchhHHHHHHHHHHHHHHhhc
Confidence 3455556788999999999999866
No 29
>KOG3564|consensus
Probab=30.08 E-value=1.9e+02 Score=23.98 Aligned_cols=59 Identities=17% Similarity=0.193 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHhhCCCCchhHHHHHH--HHHHHHhhcCCCCC--HHHHHHHHHHHHHHHHHH
Q psy2080 6 DMILKLYKALLRESSKFPAYNYRMYFLR--RTREKFQSNKNVDN--NEQISLLYNEGLKELEVL 65 (93)
Q Consensus 6 ~~Vl~LYR~llR~a~~~~~~n~r~y~~~--~ir~~Fr~nk~~~D--p~~I~~ll~~g~~~L~~l 65 (93)
=.++.+|-++.|-+.-+...| -+.|.+ +.-+.|++-..-+| -.+++.+|.+++..+..|
T Consensus 6 lnm~~~f~~l~r~~~~l~~g~-e~ef~rl~k~fed~~ek~~r~~ae~~~~~~~L~Ka~tk~~~l 68 (604)
T KOG3564|consen 6 LNMRNLFEQLVRDIEILGEGN-EDEFIRLRKDFEDFEEKWKRTDAELGKYKDLLAKAETKRSAL 68 (604)
T ss_pred HHHHHhHHHHHHHHHHhcCcc-HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhc
Confidence 357889999999998888777 445553 23344555444444 347777877776665554
No 30
>KOG2908|consensus
Probab=28.51 E-value=2.1e+02 Score=22.63 Aligned_cols=67 Identities=21% Similarity=0.276 Sum_probs=40.9
Q ss_pred HHHHHHHHHhhCCCCchhHHHHHHHHHHHHhhcCC-----------------CCCHHHHHHHHHHHHHHHHHHHHHHH-H
Q psy2080 10 KLYKALLRESSKFPAYNYRMYFLRRTREKFQSNKN-----------------VDNNEQISLLYNEGLKELEVLKRQVL-I 71 (93)
Q Consensus 10 ~LYR~llR~a~~~~~~n~r~y~~~~ir~~Fr~nk~-----------------~~Dp~~I~~ll~~g~~~L~~l~rq~~-i 71 (93)
+|-.=++-.+++..+..-.-.|...|.+.+++.+. +-|-..++++|.++++.|+.+.-..- |
T Consensus 76 slvei~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~V 155 (380)
T KOG2908|consen 76 SLVEILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNV 155 (380)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhh
Confidence 33344555666666655555667788888877765 24666777777777776666544433 4
Q ss_pred HHhcC
Q psy2080 72 SQLFK 76 (93)
Q Consensus 72 ~~~y~ 76 (93)
+.+|+
T Consensus 156 h~~fY 160 (380)
T KOG2908|consen 156 HSSFY 160 (380)
T ss_pred hhhHH
Confidence 44443
No 31
>PRK00396 rnpA ribonuclease P; Reviewed
Probab=28.13 E-value=61 Score=21.43 Aligned_cols=23 Identities=26% Similarity=0.218 Sum_probs=18.7
Q ss_pred CCCchhHHHHHHHHHHHHhhcCC
Q psy2080 22 FPAYNYRMYFLRRTREKFQSNKN 44 (93)
Q Consensus 22 ~~~~n~r~y~~~~ir~~Fr~nk~ 44 (93)
+....-|.-++|.+|+.|+.|++
T Consensus 57 ~g~AV~RNRiKR~lRE~fR~~~~ 79 (130)
T PRK00396 57 VKLAVDRNRLKRLIRESFRLNQH 79 (130)
T ss_pred CccHhHHHHHHHHHHHHHHHhhc
Confidence 44445788899999999999887
No 32
>PF06565 DUF1126: Repeat of unknown function (DUF1126); InterPro: IPR010554 This group contains several eukaryote specific repeats of around 35 residues in length. The function of this family is unknown.; PDB: 2Z14_A 2Z13_A.
Probab=27.82 E-value=28 Score=17.75 Aligned_cols=14 Identities=21% Similarity=0.268 Sum_probs=2.8
Q ss_pred ceeeeecccccccc
Q psy2080 79 KLVIETQMQNSKDT 92 (93)
Q Consensus 79 ~~vve~~~~~~~~~ 92 (93)
-.|.|+...|||-.
T Consensus 11 i~I~E~~~~NSG~~ 24 (33)
T PF06565_consen 11 ISIFEPPVRNSGRP 24 (33)
T ss_dssp EEEE----------
T ss_pred EEEEEeccCCCCCC
Confidence 37899999999854
No 33
>KOG0810|consensus
Probab=27.75 E-value=1.2e+02 Score=22.95 Aligned_cols=54 Identities=19% Similarity=0.198 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHhhCCCC--chhHHHHHHHHHHHHhhcCC-CCCHHHHHHHHHHHH
Q psy2080 6 DMILKLYKALLRESSKFPA--YNYRMYFLRRTREKFQSNKN-VDNNEQISLLYNEGL 59 (93)
Q Consensus 6 ~~Vl~LYR~llR~a~~~~~--~n~r~y~~~~ir~~Fr~nk~-~~Dp~~I~~ll~~g~ 59 (93)
.+.-.+.+.+...-..|.. .+|++..+.+|+.-+.--.. .++.+.|+.+++.|.
T Consensus 123 tq~~~~~kkf~~~M~~f~~~~~~~r~~~k~~i~Rql~i~~~~~~~de~ie~~ie~g~ 179 (297)
T KOG0810|consen 123 TQTSALSKKLKELMNEFNRTQSKYREEYKERIQRQLFIVGGEETTDEEIEEMIESGG 179 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCcCChHHHHHHHHCCC
Confidence 4455555777777777653 45777777777665555544 788999999888874
No 34
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=27.53 E-value=1.7e+02 Score=19.52 Aligned_cols=47 Identities=17% Similarity=0.076 Sum_probs=31.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CCceeeeecccccccc
Q psy2080 46 DNNEQISLLYNEGLKELEVLKRQVLISQLFK---PDKLVIETQMQNSKDT 92 (93)
Q Consensus 46 ~Dp~~I~~ll~~g~~~L~~l~rq~~i~~~y~---~~~~vve~~~~~~~~~ 92 (93)
+|...|+.=++.-++.++.+++++-..+.-- ....|+=-...++|||
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~iiG~~g~GKS 55 (204)
T cd01878 6 TDRRLIRERIAKLRRELEKVKKQRELQRRRRKRSGIPTVALVGYTNAGKS 55 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhcCCCeEEEECCCCCCHH
Confidence 5667777778888888888888877666552 2334444556667765
No 35
>PRK00588 rnpA ribonuclease P; Reviewed
Probab=27.26 E-value=58 Score=21.08 Aligned_cols=25 Identities=16% Similarity=0.005 Sum_probs=19.2
Q ss_pred hCCCCchhHHHHHHHHHHHHhhcCC
Q psy2080 20 SKFPAYNYRMYFLRRTREKFQSNKN 44 (93)
Q Consensus 20 ~~~~~~n~r~y~~~~ir~~Fr~nk~ 44 (93)
++..+-..|.-++|.+|+.|+.+.+
T Consensus 51 KKvG~AV~RNRiKR~lRE~~R~~~~ 75 (118)
T PRK00588 51 KSVGSAVERHRVARRLRHVARPILK 75 (118)
T ss_pred eecCchhHHHHHHHHHHHHHHHhhh
Confidence 3344455788899999999999866
No 36
>PRK04820 rnpA ribonuclease P; Reviewed
Probab=26.63 E-value=1.6e+02 Score=19.83 Aligned_cols=21 Identities=19% Similarity=-0.042 Sum_probs=16.6
Q ss_pred CchhHHHHHHHHHHHHhhcCC
Q psy2080 24 AYNYRMYFLRRTREKFQSNKN 44 (93)
Q Consensus 24 ~~n~r~y~~~~ir~~Fr~nk~ 44 (93)
...-|.-.+|.+|+.|+.+.+
T Consensus 61 ~AV~RNRiKR~lRE~fR~~~~ 81 (145)
T PRK04820 61 RAVGRNRIKRVLREAMRQLLP 81 (145)
T ss_pred cchhHHHHHHHHHHHHHHhhh
Confidence 345688899999999998754
No 37
>PF04695 Pex14_N: Peroxisomal membrane anchor protein (Pex14p) conserved region; InterPro: IPR006785 This conserved region defines a group of peroxisomal membrane anchor proteins which bind the PTS1 (peroxisomal targeting signal) receptor and are required for the import of PTS1-containing proteins into peroxisomes. Loss of functional Pex14p results in defects in both the PTS1 and PTS2-dependent import pathways. Deletion analysis of this conserved region implicates it in selective peroxisome degradation. In the majority of members this region is situated at the N terminus of the protein [, ].; GO: 0005777 peroxisome, 0016020 membrane; PDB: 2W85_A 2W84_A 3FF5_B.
Probab=26.38 E-value=84 Score=20.73 Aligned_cols=46 Identities=17% Similarity=0.167 Sum_probs=23.9
Q ss_pred HHHHhhCC-CCchhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHH
Q psy2080 15 LLRESSKF-PAYNYRMYFLRRTREKFQSNKNVDNNEQISLLYNEGLKEL 62 (93)
Q Consensus 15 llR~a~~~-~~~n~r~y~~~~ir~~Fr~nk~~~Dp~~I~~ll~~g~~~L 62 (93)
++-.|.+| .|.+.+.-- ..-|-+|=+.|+++ .++|+.+|.++...-
T Consensus 5 li~~A~~FL~~p~V~~sp-~~~k~~FL~sKGLt-~~EI~~al~~a~~~~ 51 (136)
T PF04695_consen 5 LIEQAVKFLQDPKVRNSP-LEKKIAFLESKGLT-EEEIDEALGRAGSPP 51 (136)
T ss_dssp HHHHHHHHHCTTTCCCS--HHHHHHHHHHCT---HHHHHHHHHHHT--S
T ss_pred HHHHHHHHhCCcccccCC-HHHHHHHHHcCCCC-HHHHHHHHHhcCCcc
Confidence 44455554 233333222 23466788888887 567888888776443
No 38
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=25.40 E-value=1.1e+02 Score=25.32 Aligned_cols=47 Identities=4% Similarity=0.162 Sum_probs=32.7
Q ss_pred HHhhcCCCCCHHHHHHHHHHHH---HHH-HHHHHHHHHHHhcCC-Cceeeee
Q psy2080 38 KFQSNKNVDNNEQISLLYNEGL---KEL-EVLKRQVLISQLFKP-DKLVIET 84 (93)
Q Consensus 38 ~Fr~nk~~~Dp~~I~~ll~~g~---~~L-~~l~rq~~i~~~y~~-~~~vve~ 84 (93)
.|++.-...|.+.+..++++++ +.| ++|.|-..+..|... .++.|++
T Consensus 257 ~~~~~l~~~d~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~i~~ 308 (735)
T PRK14806 257 ALRAAIEAGDGHALLGVFTRARAAREHFSKMLARRAYVEAMNANDVSYSVLP 308 (735)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhcccccccccccCceEEEecc
Confidence 4444444568999999999995 344 667777777777766 5566665
No 39
>PRK01313 rnpA ribonuclease P; Reviewed
Probab=24.66 E-value=80 Score=20.87 Aligned_cols=25 Identities=20% Similarity=0.074 Sum_probs=19.8
Q ss_pred hCCCCchhHHHHHHHHHHHHhhcCC
Q psy2080 20 SKFPAYNYRMYFLRRTREKFQSNKN 44 (93)
Q Consensus 20 ~~~~~~n~r~y~~~~ir~~Fr~nk~ 44 (93)
+++.+..-|..++|.+|+.|+.+..
T Consensus 55 KKvG~AV~RNRiKR~lRE~fR~~~~ 79 (129)
T PRK01313 55 KKNGNAVERNRIRRRLKEAVRLHAG 79 (129)
T ss_pred cccCcchHHHHHHHHHHHHHHHhch
Confidence 4455556788999999999999864
No 40
>PF06377 Adipokin_hormo: Adipokinetic hormone; InterPro: IPR010475 This family consists of several insect adipokinetic hormone as well as the related crustacean red pigment concentrating hormone (RPCH) []. Flight activity of insects comprises one of the most intense biochemical processes known in nature, and therefore provides an attractive model system to study the hormonal regulation of metabolism during physical exercise. In long-distance flying insects, such as the migratory locust, both carbohydrate and lipid reserves are utilised as fuels for sustained flight activity. The mobilisation of these energy stores in Locusta migratoria (Migratory locust) is mediated by three structurally related adipokinetic hormones (AKHs), which are all capable of stimulating the release of both carbohydrates and lipids from the fat body [].; GO: 0005179 hormone activity
Probab=24.42 E-value=71 Score=17.85 Aligned_cols=19 Identities=26% Similarity=0.508 Sum_probs=16.0
Q ss_pred hHHHHHHHHHHHHHhhCCC
Q psy2080 5 KDMILKLYKALLRESSKFP 23 (93)
Q Consensus 5 r~~Vl~LYR~llR~a~~~~ 23 (93)
-..++.|||-+..+|+++-
T Consensus 26 ~e~l~~iy~~iQ~EAqkl~ 44 (48)
T PF06377_consen 26 VESLLHIYKLIQNEAQKLL 44 (48)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3789999999999998764
No 41
>KOG0624|consensus
Probab=24.29 E-value=1.1e+02 Score=24.64 Aligned_cols=36 Identities=25% Similarity=0.335 Sum_probs=25.2
Q ss_pred cchHHHHHHHHHHHHHhhCCCCchhHHHH-HHHHHHHHhh
Q psy2080 3 VSKDMILKLYKALLRESSKFPAYNYRMYF-LRRTREKFQS 41 (93)
Q Consensus 3 ~~r~~Vl~LYR~llR~a~~~~~~n~r~y~-~~~ir~~Fr~ 41 (93)
+++++|...||. .|++|--.||+..= +.++-..|-.
T Consensus 406 AsKqEI~KAYRK---lAqkWHPDNFqdEeEKKkAEKKFID 442 (504)
T KOG0624|consen 406 ASKQEITKAYRK---LAQKWHPDNFQDEEEKKKAEKKFID 442 (504)
T ss_pred ccHHHHHHHHHH---HHHhcCCccccCHHHHHHHHHhhhh
Confidence 678999999996 58898556887664 4455555543
No 42
>PRK00927 tryptophanyl-tRNA synthetase; Reviewed
Probab=23.62 E-value=2.6e+02 Score=21.14 Aligned_cols=36 Identities=14% Similarity=0.284 Sum_probs=25.9
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy2080 32 LRRTREKFQSNKNVDNNEQISLLYNEGLKELEVLKRQV 69 (93)
Q Consensus 32 ~~~ir~~Fr~nk~~~Dp~~I~~ll~~g~~~L~~l~rq~ 69 (93)
..-+|+.|++-.+ |+..|+..|.+|.+....+-+.+
T Consensus 285 l~pire~~~~~~~--~~~~~~~il~~G~~~a~~~a~~~ 320 (333)
T PRK00927 285 LAPIRERYEELLA--DPAYLDEILAEGAEKARAVASKT 320 (333)
T ss_pred HHHHHHHHHHHHc--CHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666654 89999999999987766665443
No 43
>PRK10698 phage shock protein PspA; Provisional
Probab=23.61 E-value=2.3e+02 Score=20.27 Aligned_cols=23 Identities=13% Similarity=0.234 Sum_probs=19.1
Q ss_pred CCHH-HHHHHHHHHHHHHHHHHHH
Q psy2080 46 DNNE-QISLLYNEGLKELEVLKRQ 68 (93)
Q Consensus 46 ~Dp~-~I~~ll~~g~~~L~~l~rq 68 (93)
.||. -|+.++.+.++.|..++..
T Consensus 23 EDP~k~l~q~i~em~~~l~~~r~a 46 (222)
T PRK10698 23 EDPQKLVRLMIQEMEDTLVEVRST 46 (222)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4898 8999999999998888554
No 44
>KOG2713|consensus
Probab=22.76 E-value=2e+02 Score=22.32 Aligned_cols=51 Identities=18% Similarity=0.298 Sum_probs=34.0
Q ss_pred HHHHhhCCCCchhHHHHH-------HHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHH
Q psy2080 15 LLRESSKFPAYNYRMYFL-------RRTREKFQSNKNVDNNEQISLLYNEGLKELEVLKR 67 (93)
Q Consensus 15 llR~a~~~~~~n~r~y~~-------~~ir~~Fr~nk~~~Dp~~I~~ll~~g~~~L~~l~r 67 (93)
+..++..+....|..+.- .=||.+|++..+ +|+.+...++.|-+.-..+-.
T Consensus 275 V~~~~a~~~~~~fK~~vaeAvie~L~PIr~~fee~~~--~~~~l~kvl~~GaekAre~A~ 332 (347)
T KOG2713|consen 275 VVEESANMSTADFKDNVAEAVIEHLAPIRTEFEELIN--EPEYLDKVLEEGAEKARELAA 332 (347)
T ss_pred HHHHhccCCHHHHHHHHHHHHHHHhccHHHHHHHHhc--CHHHHHHHHHHhHHHHHHHHH
Confidence 344555555444555442 257888988866 899999999998766555543
No 45
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=22.43 E-value=2.2e+02 Score=18.23 Aligned_cols=32 Identities=16% Similarity=0.383 Sum_probs=19.7
Q ss_pred hHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q psy2080 27 YRMYFLRRTREKFQSNKNVDNNEQISLLYNEG 58 (93)
Q Consensus 27 ~r~y~~~~ir~~Fr~nk~~~Dp~~I~~ll~~g 58 (93)
|++..+..+...++-..+...+++|+..+..|
T Consensus 111 ~~~~~k~~i~Rq~~i~~~~~tdeei~~~~~~~ 142 (151)
T cd00179 111 YRERYKERIQRQLEITGGEATDEELEDMLESG 142 (151)
T ss_pred HHHHHHHHHHHHHHHcCCCCChHHHHHHHHcC
Confidence 55555666666666555455566777777665
No 46
>PRK01492 rnpA ribonuclease P; Reviewed
Probab=22.35 E-value=85 Score=20.31 Aligned_cols=20 Identities=20% Similarity=0.047 Sum_probs=17.2
Q ss_pred chhHHHHHHHHHHHHhhcCC
Q psy2080 25 YNYRMYFLRRTREKFQSNKN 44 (93)
Q Consensus 25 ~n~r~y~~~~ir~~Fr~nk~ 44 (93)
..-|...+|.+|+.|+.+.+
T Consensus 60 AV~RNRiKR~lRE~fR~~~~ 79 (118)
T PRK01492 60 AVVRNKIKRRIRHLIRIIVS 79 (118)
T ss_pred hhhHHHHHHHHHHHHHHhCc
Confidence 44688999999999999876
No 47
>TIGR01599 PYST-A Plasmodium yoelii subtelomeric family PYST-A. A single high-scoring gene was identified in the complete genome of P. falciparum as well as a single gene from P. chaboudi from GenBank which were included in the seed. There are no obvious homologs to these genes in any non-Plasmodium organism. These observations suggest an expansion of this family in yoelii from a common Plasmodium ancestor gene (present in a single copy in falciparum).
Probab=22.08 E-value=1.3e+02 Score=21.61 Aligned_cols=29 Identities=14% Similarity=0.022 Sum_probs=23.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2080 45 VDNNEQISLLYNEGLKELEVLKRQVLISQ 73 (93)
Q Consensus 45 ~~Dp~~I~~ll~~g~~~L~~l~rq~~i~~ 73 (93)
++||+++..+-+-..+.+..|+..++-..
T Consensus 8 C~npeE~~~A~eiM~EAv~~Lk~hAt~~d 36 (208)
T TIGR01599 8 CTDPKEIKRAEEIMEEAELRLKRHAINKN 36 (208)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHhCcCCC
Confidence 48999999999999888888887665433
No 48
>PF10273 WGG: Pre-rRNA-processing protein TSR2; InterPro: IPR019398 The pre-rRNA-processing protein TSR2 is required for 20S pre-rRNA processing []. This family contains a distinctive WGG motif.
Probab=21.77 E-value=2e+02 Score=17.36 Aligned_cols=32 Identities=13% Similarity=0.207 Sum_probs=25.7
Q ss_pred hHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHH
Q psy2080 27 YRMYFLRRTREKFQSNKNVDNNEQISLLYNEGL 59 (93)
Q Consensus 27 ~r~y~~~~ir~~Fr~nk~~~Dp~~I~~ll~~g~ 59 (93)
-++.+...|-+-|..+++.. +..|+.+|.+.-
T Consensus 32 K~~~l~~~i~~~f~~~~~~~-~~~le~~L~~~m 63 (82)
T PF10273_consen 32 KADWLAEVIVDWFTENKDPD-ADDLEDFLEDIM 63 (82)
T ss_pred HHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHH
Confidence 56788889999999987554 999998887653
No 49
>KOG0493|consensus
Probab=21.44 E-value=1.2e+02 Score=23.20 Aligned_cols=21 Identities=24% Similarity=0.468 Sum_probs=16.2
Q ss_pred hHHHHHHHHHHHHhhcCCCCC
Q psy2080 27 YRMYFLRRTREKFQSNKNVDN 47 (93)
Q Consensus 27 ~r~y~~~~ir~~Fr~nk~~~D 47 (93)
|-..-+++++.+|++|+-+|.
T Consensus 253 FtaeQL~RLK~EF~enRYlTE 273 (342)
T KOG0493|consen 253 FTAEQLQRLKAEFQENRYLTE 273 (342)
T ss_pred ccHHHHHHHHHHHhhhhhHHH
Confidence 334457899999999999873
No 50
>PRK12556 tryptophanyl-tRNA synthetase; Provisional
Probab=21.44 E-value=3.1e+02 Score=20.90 Aligned_cols=35 Identities=14% Similarity=0.250 Sum_probs=23.7
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy2080 32 LRRTREKFQSNKNVDNNEQISLLYNEGLKELEVLKRQ 68 (93)
Q Consensus 32 ~~~ir~~Fr~nk~~~Dp~~I~~ll~~g~~~L~~l~rq 68 (93)
..-+|+.|++-. .|+..++..+++|-+....+-+.
T Consensus 286 l~pire~~~~~~--~~~~~~~~il~~G~~kA~~~A~~ 320 (332)
T PRK12556 286 LAGPREKYAMYM--NEPSLLDEALEKGAERAREIAKP 320 (332)
T ss_pred HHHHHHHHHHHH--cCHHHHHHHHHHHHHHHHHHHHH
Confidence 345566665554 48888999999987766555544
No 51
>KOG1547|consensus
Probab=21.29 E-value=81 Score=24.03 Aligned_cols=18 Identities=22% Similarity=0.387 Sum_probs=16.0
Q ss_pred hhHHHHHHHHHHHHhhcC
Q psy2080 26 NYRMYFLRRTREKFQSNK 43 (93)
Q Consensus 26 n~r~y~~~~ir~~Fr~nk 43 (93)
.-|..|+++|+.+|+.|-
T Consensus 200 eEr~~FkqrI~~el~~~~ 217 (336)
T KOG1547|consen 200 EERSAFKQRIRKELEKHG 217 (336)
T ss_pred HHHHHHHHHHHHHHHhcC
Confidence 368999999999999984
No 52
>TIGR00754 bfr bacterioferritin. Bacterioferritin is a homomultimer most species. In Neisseria gonorrhoeae, Synechocystis PCC6803, Magnetospirillum magnetotacticum, and Pseudomonas aeruginosa, two types of subunit are found in a heteromultimeric complex, with each species having one member of each type. At present, both types of subunit are including in this single model.
Probab=21.01 E-value=2.3e+02 Score=18.55 Aligned_cols=26 Identities=15% Similarity=0.133 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHhhCCCCchhHHHHH
Q psy2080 7 MILKLYKALLRESSKFPAYNYRMYFL 32 (93)
Q Consensus 7 ~Vl~LYR~llR~a~~~~~~n~r~y~~ 32 (93)
.|+..|+.++..|..-.|+.....+.
T Consensus 96 ~~~~~~~e~i~~A~~~~D~~t~~ll~ 121 (157)
T TIGR00754 96 DVLNRLKEAIAYAEEVRDYVSRDLLE 121 (157)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 45666666666666665554444444
Done!