Query psy2080
Match_columns 93
No_of_seqs 113 out of 558
Neff 6.8
Searched_HMMs 13730
Date Fri Aug 16 23:48:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2080.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/2080hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1kxpd3 a.126.1.1 (D:405-473) 59.1 11 0.0008 20.4 5.1 38 20-58 4-41 (69)
2 d1a6fa_ d.14.1.2 (A:) RNase P 57.8 4.2 0.0003 23.4 2.9 25 20-44 51-75 (113)
3 d1nz0a_ d.14.1.2 (A:) RNase P 42.9 6.5 0.00047 22.3 2.0 26 20-45 44-69 (109)
4 d1d6ta_ d.14.1.2 (A:) RNase P 38.7 11 0.00078 21.6 2.6 25 20-44 51-75 (117)
5 d2bida_ f.1.4.1 (A:) Proapopto 29.2 3.3 0.00024 26.9 -1.1 30 9-38 166-195 (197)
6 d1yuza1 a.25.1.1 (A:23-157) Ni 27.9 22 0.0016 20.2 2.8 32 7-38 96-127 (135)
7 d2fkza1 a.25.1.1 (A:1-154) Bac 25.5 49 0.0036 18.9 4.2 31 6-36 95-125 (154)
8 d2htna1 a.25.1.1 (A:1-158) Bac 23.4 57 0.0042 18.7 4.2 32 6-37 95-126 (158)
9 d1ef1a1 a.11.2.1 (A:88-198) Mo 22.2 46 0.0033 18.3 3.4 32 28-59 78-109 (111)
10 d1nf4a_ a.25.1.1 (A:) Bacterio 22.0 61 0.0045 18.9 4.2 32 6-37 97-128 (169)
11 d1lkoa1 a.25.1.1 (A:2-147) Rub 21.7 37 0.0027 19.4 2.9 33 6-38 95-127 (146)
12 d1gg3a1 a.11.2.1 (A:82-187) Er 21.7 62 0.0045 17.6 4.2 33 28-60 70-102 (106)
13 d1jgca_ a.25.1.1 (A:) Bacterio 21.5 46 0.0034 19.3 3.5 31 6-36 95-125 (160)
No 1
>d1kxpd3 a.126.1.1 (D:405-473) Vitamin D binding protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=59.07 E-value=11 Score=20.36 Aligned_cols=38 Identities=11% Similarity=0.309 Sum_probs=30.5
Q ss_pred hCCCCchhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q psy2080 20 SKFPAYNYRMYFLRRTREKFQSNKNVDNNEQISLLYNEG 58 (93)
Q Consensus 20 ~~~~~~n~r~y~~~~ir~~Fr~nk~~~Dp~~I~~ll~~g 58 (93)
-++...+|-+| +.++.+.|+....-..|.+++.+.++-
T Consensus 4 ~dYse~tFte~-kkkL~e~lr~k~P~as~~~l~~mVekr 41 (69)
T d1kxpd3 4 ADYSENTFTEY-KKKLAERLKAKLPDATPKELAKLVNKR 41 (69)
T ss_dssp TTTTTSCHHHH-HHHHHHHHHHHCTTSCHHHHHHHHHHH
T ss_pred hhhhhccHHHH-HHHHHHHHHhhCCCCCHHHHHHHHHHH
Confidence 45666667765 669999999999999999999988753
No 2
>d1a6fa_ d.14.1.2 (A:) RNase P protein {Bacillus subtilis [TaxId: 1423]}
Probab=57.80 E-value=4.2 Score=23.39 Aligned_cols=25 Identities=24% Similarity=0.214 Sum_probs=20.1
Q ss_pred hCCCCchhHHHHHHHHHHHHhhcCC
Q psy2080 20 SKFPAYNYRMYFLRRTREKFQSNKN 44 (93)
Q Consensus 20 ~~~~~~n~r~y~~~~ir~~Fr~nk~ 44 (93)
+++.+...|..++|++|+.|+.+.+
T Consensus 51 KKvg~AV~RNriKR~lRe~~r~~~~ 75 (113)
T d1a6fa_ 51 KKIGNAVMRNRIKRLIRQAFLEEKE 75 (113)
T ss_dssp STTCCHHHHHHHHHHHHHHHHHHTT
T ss_pred ccccchHHHHHHHHHHHHHHHHhhc
Confidence 4455556789999999999998876
No 3
>d1nz0a_ d.14.1.2 (A:) RNase P protein {Thermotoga maritima [TaxId: 2336]}
Probab=42.87 E-value=6.5 Score=22.33 Aligned_cols=26 Identities=38% Similarity=0.427 Sum_probs=20.8
Q ss_pred hCCCCchhHHHHHHHHHHHHhhcCCC
Q psy2080 20 SKFPAYNYRMYFLRRTREKFQSNKNV 45 (93)
Q Consensus 20 ~~~~~~n~r~y~~~~ir~~Fr~nk~~ 45 (93)
+++.+...|..++|++|+.|+.+.+.
T Consensus 44 KKvg~AV~RNriKR~lRe~~r~~~~~ 69 (109)
T d1nz0a_ 44 RKFGKATRRNKLKRWVREIFRRNKGV 69 (109)
T ss_dssp GGGCSHHHHHHHHHHHHHHHHHHTTT
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHhh
Confidence 44555568899999999999998764
No 4
>d1d6ta_ d.14.1.2 (A:) RNase P protein {Staphylococcus aureus [TaxId: 1280]}
Probab=38.67 E-value=11 Score=21.59 Aligned_cols=25 Identities=28% Similarity=0.317 Sum_probs=20.1
Q ss_pred hCCCCchhHHHHHHHHHHHHhhcCC
Q psy2080 20 SKFPAYNYRMYFLRRTREKFQSNKN 44 (93)
Q Consensus 20 ~~~~~~n~r~y~~~~ir~~Fr~nk~ 44 (93)
+++.....|..++|++|+.|+.+.+
T Consensus 51 KKvg~AV~RNriKR~lRe~~R~~~~ 75 (117)
T d1d6ta_ 51 KKLGNAVLRNKIKRAIRENFKVHKS 75 (117)
T ss_dssp SSSCSTTHHHHHHHHHHHHHHHGGG
T ss_pred ccCcchHHHHHHHHHHHHHHHhhhc
Confidence 4455556799999999999998876
No 5
>d2bida_ f.1.4.1 (A:) Proapoptotic molecule Bid {Human (Homo sapiens) [TaxId: 9606]}
Probab=29.21 E-value=3.3 Score=26.85 Aligned_cols=30 Identities=20% Similarity=0.318 Sum_probs=26.4
Q ss_pred HHHHHHHHHHhhCCCCchhHHHHHHHHHHH
Q psy2080 9 LKLYKALLRESSKFPAYNYRMYFLRRTREK 38 (93)
Q Consensus 9 l~LYR~llR~a~~~~~~n~r~y~~~~ir~~ 38 (93)
=+|.|..+++.-.|-+.|++.|.++-+|.+
T Consensus 166 PsLLr~Vf~TTvnfInqnl~~YvrnL~Rn~ 195 (197)
T d2bida_ 166 PSLLRDVFHTTVNFINQNLRTYVRSLARNG 195 (197)
T ss_dssp TTCHHHHHHHHHHHHHTTTHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 368999999999999999999999988864
No 6
>d1yuza1 a.25.1.1 (A:23-157) Nigerythrin, N-terminal domain {Desulfovibrio vulgaris [TaxId: 881]}
Probab=27.93 E-value=22 Score=20.16 Aligned_cols=32 Identities=16% Similarity=0.177 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHhhCCCCchhHHHHHHHHHHH
Q psy2080 7 MILKLYKALLRESSKFPAYNYRMYFLRRTREK 38 (93)
Q Consensus 7 ~Vl~LYR~llR~a~~~~~~n~r~y~~~~ir~~ 38 (93)
.+..+|+.++..|+.-.++..++.|.+.+.++
T Consensus 96 e~~~~Y~~~~~~A~~~~d~~~~~~f~~i~~~E 127 (135)
T d1yuza1 96 ETSDMYPAFIRKAQEEGNSKAVHVFTRAKLAE 127 (135)
T ss_dssp HHHTHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 57778888888888777767777777655543
No 7
>d2fkza1 a.25.1.1 (A:1-154) Bacterioferritin (cytochrome b1) {Azotobacter vinelandii [TaxId: 354]}
Probab=25.54 E-value=49 Score=18.89 Aligned_cols=31 Identities=16% Similarity=0.019 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHhhCCCCchhHHHHHHHHH
Q psy2080 6 DMILKLYKALLRESSKFPAYNYRMYFLRRTR 36 (93)
Q Consensus 6 ~~Vl~LYR~llR~a~~~~~~n~r~y~~~~ir 36 (93)
+.++..|+.+...|....|+...+.+...+.
T Consensus 95 ~~~~~~y~~~~~~a~~~~D~~t~~~l~~il~ 125 (154)
T d2fkza1 95 QAGLPDLKAAIAYCESVGDYASRELLEDILE 125 (154)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4677788888888887777666666664444
No 8
>d2htna1 a.25.1.1 (A:1-158) Bacterioferritin (cytochrome b1) {Escherichia coli [TaxId: 562]}
Probab=23.36 E-value=57 Score=18.66 Aligned_cols=32 Identities=13% Similarity=0.025 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHhhCCCCchhHHHHHHHHHH
Q psy2080 6 DMILKLYKALLRESSKFPAYNYRMYFLRRTRE 37 (93)
Q Consensus 6 ~~Vl~LYR~llR~a~~~~~~n~r~y~~~~ir~ 37 (93)
..++..|+.+++.|..-.|+..+..+...+.+
T Consensus 95 ~~~~~~~~~~~~~a~~~~D~~t~~~l~~il~e 126 (158)
T d2htna1 95 LDGAKNLREAIGYADSVHDYVSRDMMIEILRD 126 (158)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45677888888888777766666666655554
No 9
>d1ef1a1 a.11.2.1 (A:88-198) Moesin {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.20 E-value=46 Score=18.31 Aligned_cols=32 Identities=3% Similarity=0.023 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHH
Q psy2080 28 RMYFLRRTREKFQSNKNVDNNEQISLLYNEGL 59 (93)
Q Consensus 28 r~y~~~~ir~~Fr~nk~~~Dp~~I~~ll~~g~ 59 (93)
.+.+...|...++..++.+..+..-.+|+.++
T Consensus 78 ~~~~~~~I~~~h~~l~g~s~~~A~~~fL~~~~ 109 (111)
T d1ef1a1 78 KDQWEERIQVWHEEHRGMLREDAVLEYLKIAQ 109 (111)
T ss_dssp HHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHh
Confidence 36788899999999999988888777777664
No 10
>d1nf4a_ a.25.1.1 (A:) Bacterioferritin (cytochrome b1) {Desulfovibrio desulfuricans [TaxId: 876]}
Probab=22.04 E-value=61 Score=18.87 Aligned_cols=32 Identities=19% Similarity=0.214 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHhhCCCCchhHHHHHHHHHH
Q psy2080 6 DMILKLYKALLRESSKFPAYNYRMYFLRRTRE 37 (93)
Q Consensus 6 ~~Vl~LYR~llR~a~~~~~~n~r~y~~~~ir~ 37 (93)
..++..|+.++..|..-.|+..++.+...+.+
T Consensus 97 ~~~~~~y~~~~~~A~~~~D~~t~~~l~~il~e 128 (169)
T d1nf4a_ 97 DATIEAYSQFLKVCKEQGDIVTARLFERIIEE 128 (169)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 56788999999999887777667776655544
No 11
>d1lkoa1 a.25.1.1 (A:2-147) Rubrerythrin, N-terminal domain {Desulfovibrio vulgaris [TaxId: 881]}
Probab=21.73 E-value=37 Score=19.41 Aligned_cols=33 Identities=9% Similarity=0.033 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHH
Q psy2080 6 DMILKLYKALLRESSKFPAYNYRMYFLRRTREK 38 (93)
Q Consensus 6 ~~Vl~LYR~llR~a~~~~~~n~r~y~~~~ir~~ 38 (93)
..+...|..+.+.|+.-.++..+..|.+-+.++
T Consensus 95 ~e~~~~y~~~~~~a~~~~D~~~~~~f~~i~~~E 127 (146)
T d1lkoa1 95 HEYTEMYPSFARIAREEGYEEIARVFASIAVAE 127 (146)
T ss_dssp HHHHTHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 357788888888888888777777777666654
No 12
>d1gg3a1 a.11.2.1 (A:82-187) Erythroid membrane protein 4.1R {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.67 E-value=62 Score=17.57 Aligned_cols=33 Identities=9% Similarity=0.025 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHH
Q psy2080 28 RMYFLRRTREKFQSNKNVDNNEQISLLYNEGLK 60 (93)
Q Consensus 28 r~y~~~~ir~~Fr~nk~~~Dp~~I~~ll~~g~~ 60 (93)
-+.+..+|-..+++.++.+..+..-.+|+.+++
T Consensus 70 ~~~~~~~I~~~h~~l~G~s~~~A~~~fL~~~~~ 102 (106)
T d1gg3a1 70 TKELEEKVMELHKSYRSMTPAQADLEFLENAKK 102 (106)
T ss_dssp CHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCcCHHHHHHHHHHHHhc
Confidence 356788999999999999888888888887764
No 13
>d1jgca_ a.25.1.1 (A:) Bacterioferritin (cytochrome b1) {Rhodobacter capsulatus [TaxId: 1061]}
Probab=21.54 E-value=46 Score=19.32 Aligned_cols=31 Identities=16% Similarity=0.094 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHhhCCCCchhHHHHHHHHH
Q psy2080 6 DMILKLYKALLRESSKFPAYNYRMYFLRRTR 36 (93)
Q Consensus 6 ~~Vl~LYR~llR~a~~~~~~n~r~y~~~~ir 36 (93)
..++..|++++..|..-.|+...+.+...+.
T Consensus 95 ~~~~~~~~~~~~~a~~~~D~~t~~~l~~~l~ 125 (160)
T d1jgca_ 95 HDALKLYREARDYCAEVGDIVSKNIFESLIT 125 (160)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 3456666776666665555444444443333
Done!