RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy2080
         (93 letters)



>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
          photosynthetic reaction center, peripheral antenna;
          HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 34.9 bits (79), Expect = 0.001
 Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 11/35 (31%)

Query: 57 EGLKELEV-LKRQVLISQLFKPDK---LVIETQMQ 87
          + LK+L+  LK       L+  D    L I+  M+
Sbjct: 20 QALKKLQASLK-------LYADDSAPALAIKATME 47



 Score = 26.8 bits (58), Expect = 0.86
 Identities = 8/24 (33%), Positives = 12/24 (50%), Gaps = 6/24 (25%)

Query: 2  SVSK-DMILKLYKALLRESSKFPA 24
          ++ K    LKLY     +S+  PA
Sbjct: 21 ALKKLQASLKLYAD---DSA--PA 39


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 30.6 bits (68), Expect = 0.048
 Identities = 19/96 (19%), Positives = 34/96 (35%), Gaps = 23/96 (23%)

Query: 12  YKAL---LRESSKFPAYNYRMYFLRRTR-----EKFQSNKNVDNNEQISLLYNEGLKELE 63
           YK L   ++   + P+   RMY  +R R     + F +  NV   +    L  + L EL 
Sbjct: 91  YKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVF-AKYNVSRLQPYLKL-RQALLELR 148

Query: 64  VLK-----------RQVLISQLFKPDKLVIETQMQN 88
             K           +  +   +    K  ++ +M  
Sbjct: 149 PAKNVLIDGVLGSGKTWVALDVCLSYK--VQCKMDF 182


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 28.5 bits (63), Expect = 0.27
 Identities = 19/101 (18%), Positives = 34/101 (33%), Gaps = 32/101 (31%)

Query: 14  ALLRESSK----FPAYNYRMYFLRR-TREKFQS-----NKNVDNNEQISL-LYN------ 56
           ++L +S +     P+    M  +   T+E+ Q      N ++   +Q+ + L N      
Sbjct: 322 SILEDSLENNEGVPSP---MLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLV 378

Query: 57  --------EGLK-ELEVLKRQVLISQ---LFKPDKLVIETQ 85
                    GL   L   K    + Q    F   KL    +
Sbjct: 379 VSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNR 419


>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}
          Length = 354

 Score = 25.9 bits (57), Expect = 1.9
 Identities = 10/69 (14%), Positives = 22/69 (31%), Gaps = 8/69 (11%)

Query: 4   SKDMILKLYKALLRESSKFPAYNYRMYFL----RRTREKFQSNKNVDNNEQISLLYNEGL 59
            K+ +  LY   LR +        R+  L       +        + +      +   G+
Sbjct: 288 RKEGLFHLYWDFLRGALALLPPGGRVALLTLRPALLKRALPPGFALRHARV---VEQGGV 344

Query: 60  K-ELEVLKR 67
              + VL++
Sbjct: 345 YPRVFVLEK 353


>3ngq_A CCR4-NOT transcription complex subunit 6-like; alpha/beta sandwich
           fold, hydrolase; HET: 1PS; 1.80A {Homo sapiens} PDB:
           3ngo_A 3ngn_A
          Length = 398

 Score = 24.9 bits (53), Expect = 5.0
 Identities = 9/68 (13%), Positives = 28/68 (41%), Gaps = 8/68 (11%)

Query: 3   VSKDMILKLYKALLRESSKFPAYNYRMYFLRRTREKFQSNKNVDNNEQISLLYNEGLKEL 62
           V  +    L+   L+E        Y  +F  ++R K  S +   + +  ++ +    ++ 
Sbjct: 84  VETEQYFTLFLPALKE------RGYDGFFSPKSRAKIMSEQERKHVDGCAIFFKT--EKF 135

Query: 63  EVLKRQVL 70
            ++++  +
Sbjct: 136 TLVQKHTV 143


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.317    0.132    0.349 

Gapped
Lambda     K      H
   0.267   0.0648    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,220,772
Number of extensions: 56883
Number of successful extensions: 99
Number of sequences better than 10.0: 1
Number of HSP's gapped: 99
Number of HSP's successfully gapped: 11
Length of query: 93
Length of database: 6,701,793
Length adjustment: 60
Effective length of query: 33
Effective length of database: 5,026,533
Effective search space: 165875589
Effective search space used: 165875589
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.6 bits)