RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2080
         (93 letters)



>d1ywka1 b.82.1.13 (A:1001-1260) 5-keto-4-deoxyuronate isomerase
          KduI {Enterococcus faecalis [TaxId: 1351]}
          Length = 260

 Score = 23.2 bits (50), Expect = 5.7
 Identities = 5/19 (26%), Positives = 11/19 (57%)

Query: 63 EVLKRQVLISQLFKPDKLV 81
          E L+ + L+ ++F P  + 
Sbjct: 18 EQLRDEFLVEKVFIPGAIS 36


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.132    0.349 

Gapped
Lambda     K      H
   0.267   0.0647    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 293,258
Number of extensions: 11144
Number of successful extensions: 30
Number of sequences better than 10.0: 1
Number of HSP's gapped: 30
Number of HSP's successfully gapped: 6
Length of query: 93
Length of database: 2,407,596
Length adjustment: 56
Effective length of query: 37
Effective length of database: 1,638,716
Effective search space: 60632492
Effective search space used: 60632492
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.1 bits)