BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2081
(380 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2E3U|A Chain A, Crystal Structure Analysis Of Dim2p From Pyrococcus
Horikoshii Ot3
pdb|3AEV|B Chain B, Crystal Structure Of AEIF2ALPHA-Adim2p-Rrna Complex From
Pyrococcus Horikoshii Ot3
Length = 219
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 5/68 (7%)
Query: 95 CHIPKSFYPFIIGVKGSTKRRIESETNTQLSIPRQGQTGDIIISSY--SERGIASAKRRL 152
IPK +IG KG TK+ IE T T+++I +TG++ I+S +E +A K R
Sbjct: 38 VKIPKDRIAVLIGKKGQTKKEIEKRTKTKITI--DSETGEVWITSTKETEDPLAVWKAR- 94
Query: 153 DLLLVFAR 160
D++L R
Sbjct: 95 DIVLAIGR 102
>pdb|2CTE|A Chain A, Solution Structure Of The 1st Kh Type I Domain From Human
Vigilin
Length = 94
Score = 34.7 bits (78), Expect = 0.081, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 97 IPKSFYPFIIGVKGSTKRRIESETNTQLSIPRQGQTGDIIISSYSERGIASAKRRLDLLL 156
IPK + F+IG G + +E +T T++ IPR + I + ++ GI A R ++LL
Sbjct: 23 IPKEHHRFVIGKNGEKLQDLELKTATKIQIPRPDDPSNQIKITGTKEGIEKA--RHEVLL 80
Query: 157 VFARK 161
+ A +
Sbjct: 81 ISAEQ 85
>pdb|1QPP|A Chain A, Crystal Structures Of Self Capping Papd Chaperone
Homodimers
pdb|1QPP|B Chain B, Crystal Structures Of Self Capping Papd Chaperone
Homodimers
Length = 218
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 21/40 (52%)
Query: 93 YQCHIPKSFYPFIIGVKGSTKRRIESETNTQLSIPRQGQT 132
Y+ P +Y +IG+ GS K+ E E T + PR QT
Sbjct: 141 YRIENPTPYYVTVIGLGGSEKQAEEGEFETVMLSPRSEQT 180
>pdb|2J7L|A Chain A, E.Coli P Pilus Chaperone Papd In Complex With A Pilus
Biogenesis Inhibitor, Pilicide 2c
pdb|3DPA|A Chain A, Crystal Structure Of Chaperone Protein Papd Reveals An
Immunoglobulin Fold
Length = 218
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 21/40 (52%)
Query: 93 YQCHIPKSFYPFIIGVKGSTKRRIESETNTQLSIPRQGQT 132
Y+ P +Y +IG+ GS K+ E E T + PR QT
Sbjct: 141 YRIENPTPYYVTVIGLGGSEKQAEEGEFETVMLSPRSEQT 180
>pdb|2WMP|A Chain A, Structure Of The E. Coli Chaperone Papd In Complex With
The Pilin Domain Of The Papgii Adhesin
Length = 224
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 21/40 (52%)
Query: 93 YQCHIPKSFYPFIIGVKGSTKRRIESETNTQLSIPRQGQT 132
Y+ P +Y +IG+ GS K+ E E T + PR QT
Sbjct: 141 YRIENPTPYYVTVIGLGGSEKQAEEGEFETVMLSPRSEQT 180
>pdb|1PDK|A Chain A, Papd-Papk Chaperone-Pilus Subunit Complex From E.Coli P
Pilus
pdb|2J2Z|A Chain A, X-Ray Structure Of The Chaperone Papd In Complex With The
Pilus Terminator Subunit Paph At 2.3 Angstrom Resolution
pdb|2UY6|A Chain A, Crystal Structure Of The P Pilus Rod Subunit Papa
pdb|2UY7|A Chain A, Crystal Structure Of The P Pilus Rod Subunit Papa
pdb|2UY7|C Chain C, Crystal Structure Of The P Pilus Rod Subunit Papa
pdb|2UY7|E Chain E, Crystal Structure Of The P Pilus Rod Subunit Papa
pdb|2UY7|G Chain G, Crystal Structure Of The P Pilus Rod Subunit Papa
pdb|2W07|A Chain A, Structural Determinants Of Polymerization Reactivity Of
The P Pilus Adaptor Subunit Papf
pdb|2XG4|A Chain A, E. Coli P Pilus Chaperone-Subunit Complex Papd-Paph Bound
To Pilus Biogenesis Inhibitor, Pilicide 2c
pdb|2XG5|A Chain A, E. Coli P Pilus Chaperone-Subunit Complex Papd-Paph Bound
To Pilus Biogenesis Inhibitor, Pilicide 5d
Length = 218
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 21/40 (52%)
Query: 93 YQCHIPKSFYPFIIGVKGSTKRRIESETNTQLSIPRQGQT 132
Y+ P +Y +IG+ GS K+ E E T + PR QT
Sbjct: 141 YRIENPTPYYVTVIGLGGSEKQAEEGEFETVMLSPRSEQT 180
>pdb|1QPX|A Chain A, Crystal Structures Of Self-Capping Papd Chaperone
Homodimers
pdb|1QPX|B Chain B, Crystal Structures Of Self-Capping Papd Chaperone
Homodimers
Length = 218
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 21/40 (52%)
Query: 93 YQCHIPKSFYPFIIGVKGSTKRRIESETNTQLSIPRQGQT 132
Y+ P +Y +IG+ GS K+ E E T + PR QT
Sbjct: 141 YRIENPTPYYVTVIGLGGSEKQAEEGEFETVMLSPRSEQT 180
>pdb|2XTZ|A Chain A, Crystal Structure Of The G Alpha Protein Atgpa1 From
Arabidopsis Thaliana
pdb|2XTZ|B Chain B, Crystal Structure Of The G Alpha Protein Atgpa1 From
Arabidopsis Thaliana
pdb|2XTZ|C Chain C, Crystal Structure Of The G Alpha Protein Atgpa1 From
Arabidopsis Thaliana
Length = 354
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 4/83 (4%)
Query: 194 SRCRGIEESLFQEPGRL---HITMGMLMLADSVERDQAVEVLQKCGNNIILPILRSQRIK 250
S I E L + GRL +T + +++ +D A++ GN + +P ++ +
Sbjct: 81 SESIAIGEKLSEIGGRLDYPRLTKDIAEGIETLWKDPAIQETXARGNELQVPD-XTKYLM 139
Query: 251 INLKGLEIMNDDPAEVDILYAKV 273
NLK L +N P + D+LYA+V
Sbjct: 140 ENLKRLSDINYIPTKEDVLYARV 162
>pdb|2DGR|A Chain A, Solution Structure Of The Second Kh Domain In Ring Finger
And Kh Domain Containing Protein 1
Length = 83
Score = 28.5 bits (62), Expect = 6.6, Method: Composition-based stats.
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 90 QYKYQCHIPKSFYPFIIGVKGSTKRRIESETNTQLSIP 127
Q Q +P ++G KG+T +RI+ T+T + P
Sbjct: 9 QTTIQVRVPYRVVGLVVGPKGATIKRIQQRTHTYIVTP 46
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,074,512
Number of Sequences: 62578
Number of extensions: 440929
Number of successful extensions: 896
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 883
Number of HSP's gapped (non-prelim): 17
length of query: 380
length of database: 14,973,337
effective HSP length: 101
effective length of query: 279
effective length of database: 8,652,959
effective search space: 2414175561
effective search space used: 2414175561
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)