BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2081
(380 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9D8Z1|ASCC1_MOUSE Activating signal cointegrator 1 complex subunit 1 OS=Mus musculus
GN=Ascc1 PE=2 SV=1
Length = 356
Score = 216 bits (550), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 126/365 (34%), Positives = 196/365 (53%), Gaps = 30/365 (8%)
Query: 19 DVVNPKIEIIDGRRYRVNPSWPSTYEDKSEADPYQRSEYDAGCPGGNQPYEEDDGGLSED 78
DV+ P+I DGR YR NP Y+ + + D Y S + P G + G
Sbjct: 2 DVLRPQIVTFDGRNYRKNPIQEKQYQHEEDEDFYPDSMEYSDEPCGAYEVAQTPHG---- 57
Query: 79 EDLDIYLGKDGQYKYQCHIPKSFYPFIIGVKGSTKRRIESETNTQLSIPRQGQTGDIIIS 138
++ P Y I+G +G TK++IE ET T ++IP+ G G+I+I+
Sbjct: 58 ------------FRATVSAPSLLYKHIVGKRGDTKKKIEVETKTSINIPKHGHEGEIVIT 105
Query: 139 SYSERGIASAKRRLDLLLVFARKKIPYTHLLSIPMNVPNIQENFAKFKATVLSDFSRCRG 198
G+ SA+ R+D+LL R++ P+TH LS +N +QE F F+ VL S+ RG
Sbjct: 106 GQHRNGVVSARTRIDVLLDTFRRRQPFTHFLSFFLNEVEVQERFLMFQEEVLRKCSKDRG 165
Query: 199 IEESLFQEPGRLHITMGMLMLADSVERDQAVEVLQKCGNNIILPILRSQRIKINLKGLEI 258
++ ++FQ P +LH+T+GML+L E Q E+LQ+C I I + +++ + G+E
Sbjct: 166 VDSTIFQNPKKLHLTIGMLVLLSEQEIQQTCEILQRCKEEFINDISGGRPLEVEMAGIEY 225
Query: 259 MNDDPAEVDILYAKV--VDDSGLVQKLCDDVVQYFISQHLISKAYQKYDTVKMHVTLMNS 316
MNDDPA VD+LYAKV D S +Q+L D V++ F S LI K ++ +VK+H T+MN+
Sbjct: 226 MNDDPAMVDVLYAKVHMKDGSNRLQELVDRVLERFQSLGLIVK---EWTSVKLHATVMNT 282
Query: 317 KYRMRQNPSSDTN---------SEKRSTFNAKDILESLGDFEFGETFVYCVHLSQRHTHD 367
R N N ++R +F+ ++IL++ +F FG + +H+SQR T D
Sbjct: 283 LLRKDPNAEGRYNLYTADGKYIFKERESFDGRNILKTFENFYFGSLRLNSIHISQRFTVD 342
Query: 368 MDGYF 372
G +
Sbjct: 343 SFGNY 347
>sp|Q8N9N2|ASCC1_HUMAN Activating signal cointegrator 1 complex subunit 1 OS=Homo sapiens
GN=ASCC1 PE=1 SV=1
Length = 400
Score = 192 bits (488), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 122/355 (34%), Positives = 193/355 (54%), Gaps = 33/355 (9%)
Query: 19 DVVNPKIEIIDGRRYRVNPSWPSTYE-DKSEADPYQRSEYDAGCPGGNQPYEEDDGGLSE 77
+V+ P++ IDGR YR NP TY+ ++ E D YQ S A P E+ G
Sbjct: 2 EVLRPQLIRIDGRNYRKNPVQEQTYQHEEDEEDFYQGSMECADEPCDAYEVEQTPQGFRS 61
Query: 78 DEDLD------IYLGKDGQYKYQ-----CHIPKSFYPF----IIGVKGSTKRRIESETNT 122
I+L +Q C ++ Y + I+G +G T+++IE ET T
Sbjct: 62 TLRAPSLLYNLIHLNTSNDCGFQKITLDC---QNIYTWKSRHIVGKRGDTRKKIEMETKT 118
Query: 123 QLSIPRQGQTGDIIISSYSERGIASAKRRLDLLLVFARKKIPYTHLLSIPMNVPNIQENF 182
+SIP+ GQ G+I+I+ G+ SA+ R+D+LL R+K P+TH L+ +N +QE F
Sbjct: 119 SISIPKPGQDGEIVITGQHRNGVISARTRIDVLLDTFRRKQPFTHFLAFFLNEVEVQEGF 178
Query: 183 AKFKATVLSDFSRCRGIEESLFQEPGRLHITMGMLMLADSVERDQAVEVLQKCGNNIILP 242
+F+ VL+ S G++ S+FQ P +LH+T+GML+L E Q E+LQ+C I
Sbjct: 179 LRFQEEVLAKCSMDHGVDSSIFQNPKKLHLTIGMLVLLSEEEIQQTCEMLQQCKEEFIND 238
Query: 243 ILRSQRIKINLKGLEIMNDDPAEVDILYAKV--VDDSGLVQKLCDDVVQYFISQHLISKA 300
I + +++ + G+E MNDDP VD+LYAKV D S +Q+L D V++ F + LI K
Sbjct: 239 ISGGKPLEVEMAGIEYMNDDPGMVDVLYAKVHMKDGSNRLQELVDRVLERFQASGLIVK- 297
Query: 301 YQKYDTVKMHVTLMNSKYRMRQNPSSDTN---------SEKRSTFNAKDILESLG 346
++++VK+H T+MN+ +R N N ++R +F+ ++IL+S
Sbjct: 298 --EWNSVKLHATVMNTLFRKDPNAEGRYNLYTAEGKYIFKERESFDGRNILKSFA 350
>sp|A6X982|YOGD_SCHPO Uncharacterized protein C15D4.13c OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPBC15D4.13c PE=4 SV=2
Length = 204
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 83/195 (42%), Gaps = 33/195 (16%)
Query: 162 KIPYTHLLSIPMNVPNIQENFAKFKAT-----VLSDFSRCRGIEESLFQEPGRLHITMGM 216
+ P L++P++ I+E+ FK T +LS F RG P H+T+GM
Sbjct: 2 RYPNLLFLALPISEHYIEESLKYFKLTSNDPMILSGF---RG--------PRVSHLTIGM 50
Query: 217 LMLADSVERDQAVEVLQKCGNNIILPILRSQRIKINLKGLEIMNDDPAEVDILYAKVVDD 276
+ + + + + ++ L + I ++I I+LKG P E +LYA VD
Sbjct: 51 IPVKNDEDVLKCMDFLYNKEDEI-RKSYGEKKITIDLKGTSFFGKSPQEAKVLYATPVDK 109
Query: 277 SGLVQKLCDDVVQYFISQHLISKAYQKYDTVKMHVTLMNSKYRMRQNPSSDTNSEKRSTF 336
K+ F +L +K + + +H TL+NS+Y Q + F
Sbjct: 110 HNEWLKVI------FTEHNLFTKDAR---PLTLHCTLLNSRYIKYQ-------GRRIRFF 153
Query: 337 NAKDILESLGDFEFG 351
N++ +E G F +
Sbjct: 154 NSEPFMEKYGQFLWA 168
>sp|Q00341|VIGLN_HUMAN Vigilin OS=Homo sapiens GN=HDLBP PE=1 SV=2
Length = 1268
Score = 37.4 bits (85), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 54/126 (42%), Gaps = 17/126 (13%)
Query: 88 DGQYKYQCHIPKSFYPFIIGVKGSTKRRIESETNTQLSIPRQGQTGDIIISSYSERGIAS 147
+ Y I K F+ IIG G+ ++I E+NT++ +P + + II + +
Sbjct: 579 ENSYSISVPIFKQFHKNIIGKGGANIKKIREESNTKIDLPAENSNSETIIITGKRANCEA 638
Query: 148 AKRRLDLLLVFARKKIPYTHLLSIPMNVPNIQENFAKFKATVLSDFSRCRG-IEESLFQE 206
A+ R +LSI ++ NI E A + + +G + S+ +E
Sbjct: 639 ARSR----------------ILSIQKDLANIAEVEVSIPAKLHNSLIGTKGRLIRSIMEE 682
Query: 207 PGRLHI 212
G +HI
Sbjct: 683 CGGVHI 688
Score = 35.8 bits (81), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Query: 82 DIYLGKDGQYKYQCHIPKSFYPFIIGVKGSTKRRIESETNTQLSIPRQGQTGDIIISSYS 141
DI Q IPK + F+IG G + +E +T T++ IPR + I + +
Sbjct: 142 DIVARLQTQASATVAIPKEHHRFVIGKNGEKLQDLELKTATKIQIPRPDDPSNQIKITGT 201
Query: 142 ERGIASAKRRLDLLLVFARK 161
+ GI A R ++LL+ A +
Sbjct: 202 KEGIEKA--RHEVLLISAEQ 219
Score = 31.6 bits (70), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 42/88 (47%), Gaps = 13/88 (14%)
Query: 88 DGQYKYQCHIPKSFYPFIIGVKGSTKRRIESETNTQLSIPRQGQ-----TGDIIISSYSE 142
+ Q +C IP+ F+ ++G KGS ++I + + Q+ P + + T ++ + E
Sbjct: 871 EAQVTLECAIPQKFHRSVMGPKGSRIQQITRDFSVQIKFPDREENAVHSTEPVVQENGDE 930
Query: 143 RGIA--------SAKRRLDLLLVFARKK 162
G + RR D++++ RK+
Sbjct: 931 AGEGREAKDCDPGSPRRCDIIIISGRKE 958
>sp|Q8VDJ3|VIGLN_MOUSE Vigilin OS=Mus musculus GN=Hdlbp PE=1 SV=1
Length = 1268
Score = 37.4 bits (85), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 54/126 (42%), Gaps = 17/126 (13%)
Query: 88 DGQYKYQCHIPKSFYPFIIGVKGSTKRRIESETNTQLSIPRQGQTGDIIISSYSERGIAS 147
+ Y I K F+ IIG G+ ++I E+NT++ +P + + II + +
Sbjct: 579 ENSYSISVPIFKQFHKNIIGKGGANIKKIREESNTKIDLPAENSNSETIIITGKRANCEA 638
Query: 148 AKRRLDLLLVFARKKIPYTHLLSIPMNVPNIQENFAKFKATVLSDFSRCRG-IEESLFQE 206
A+ R +LSI ++ NI E A + + +G + S+ +E
Sbjct: 639 ARSR----------------ILSIQKDLANIAEVEVSIPAKLHNSLIGTKGRLIRSIMEE 682
Query: 207 PGRLHI 212
G +HI
Sbjct: 683 CGGVHI 688
Score = 35.4 bits (80), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Query: 82 DIYLGKDGQYKYQCHIPKSFYPFIIGVKGSTKRRIESETNTQLSIPRQGQTGDIIISSYS 141
DI Q IPK + F+IG G + +E +T T++ IPR + I + +
Sbjct: 142 DIVARLQTQASATVPIPKEHHRFVIGKNGEKLQDLELKTATKIQIPRPDDPSNQIKITGT 201
Query: 142 ERGIASAKRRLDLLLVFARK 161
+ GI A R ++LL+ A +
Sbjct: 202 KEGIEKA--RHEVLLISAEQ 219
Score = 34.3 bits (77), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 41/88 (46%), Gaps = 13/88 (14%)
Query: 88 DGQYKYQCHIPKSFYPFIIGVKGSTKRRIESETNTQLSIP-RQGQTGDIIISSYSERGIA 146
+ Q +C IP+ F+ ++G KGS ++I + N Q+ P R+ + S E G
Sbjct: 871 EAQVTVECAIPQKFHRSVMGPKGSRIQQITRDYNVQIKFPDREENPVHSVEPSIQENGDE 930
Query: 147 SAK------------RRLDLLLVFARKK 162
+ + RR D++++ RK+
Sbjct: 931 AGEGREAKETDPGSPRRCDIIIISGRKE 958
>sp|Q5R439|VIGLN_PONAB Vigilin OS=Pongo abelii GN=HDLBP PE=2 SV=1
Length = 1268
Score = 37.4 bits (85), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 54/126 (42%), Gaps = 17/126 (13%)
Query: 88 DGQYKYQCHIPKSFYPFIIGVKGSTKRRIESETNTQLSIPRQGQTGDIIISSYSERGIAS 147
+ Y I K F+ IIG G+ ++I E+NT++ +P + + II + +
Sbjct: 579 ENSYSISVPIFKQFHKNIIGKGGANIKKIREESNTKIDLPAENSNSETIIITGKRANCEA 638
Query: 148 AKRRLDLLLVFARKKIPYTHLLSIPMNVPNIQENFAKFKATVLSDFSRCRG-IEESLFQE 206
A+ R +LSI ++ NI E A + + +G + S+ +E
Sbjct: 639 ARSR----------------ILSIQKDLANIAEVEVSIPAKLHNSLIGTKGRLIRSIMEE 682
Query: 207 PGRLHI 212
G +HI
Sbjct: 683 CGGVHI 688
Score = 35.4 bits (80), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Query: 82 DIYLGKDGQYKYQCHIPKSFYPFIIGVKGSTKRRIESETNTQLSIPRQGQTGDIIISSYS 141
DI Q IPK + F+IG G + +E +T T++ IPR + I + +
Sbjct: 142 DIVARLQTQASATVAIPKEHHRFVIGKNGEKLQDLELKTATKIQIPRPDDPSNQIKITGT 201
Query: 142 ERGIASAKRRLDLLLVFARK 161
+ GI A R ++LL+ A +
Sbjct: 202 KEGIEKA--RHEVLLISAEQ 219
>sp|Q9Z1A6|VIGLN_RAT Vigilin OS=Rattus norvegicus GN=Hdlbp PE=1 SV=1
Length = 1268
Score = 37.0 bits (84), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 54/126 (42%), Gaps = 17/126 (13%)
Query: 88 DGQYKYQCHIPKSFYPFIIGVKGSTKRRIESETNTQLSIPRQGQTGDIIISSYSERGIAS 147
+ Y I K F+ IIG G+ ++I E+NT++ +P + + I+ + +
Sbjct: 579 ENSYSISVPIFKQFHKNIIGKGGANIKKIREESNTKIDLPAENSNSETIVITGKRANCEA 638
Query: 148 AKRRLDLLLVFARKKIPYTHLLSIPMNVPNIQENFAKFKATVLSDFSRCRG-IEESLFQE 206
A+ R +LSI ++ NI E A + + +G + S+ +E
Sbjct: 639 ARSR----------------ILSIQKDLANIAEVEVSIPAKLHNSLIGTKGRLIRSIMEE 682
Query: 207 PGRLHI 212
G +HI
Sbjct: 683 CGGVHI 688
Score = 35.4 bits (80), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Query: 82 DIYLGKDGQYKYQCHIPKSFYPFIIGVKGSTKRRIESETNTQLSIPRQGQTGDIIISSYS 141
DI Q IPK + F+IG G + +E +T T++ IPR + I + +
Sbjct: 142 DIVARLQTQASATVPIPKEHHRFVIGKNGEKLQDLELKTATKIQIPRPDDPSNQIKITGT 201
Query: 142 ERGIASAKRRLDLLLVFARK 161
+ GI A R ++LL+ A +
Sbjct: 202 KEGIEKA--RHEVLLISAEQ 219
Score = 33.9 bits (76), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 41/88 (46%), Gaps = 13/88 (14%)
Query: 88 DGQYKYQCHIPKSFYPFIIGVKGSTKRRIESETNTQLSIP-RQGQTGDIIISSYSERGIA 146
+ Q +C IP+ F+ ++G KGS ++I + N Q+ P R+ + S E G
Sbjct: 871 EAQVTLECAIPQKFHRSVMGPKGSRIQQITRDYNVQIKFPDREENPVHSVEPSIQENGDE 930
Query: 147 SAK------------RRLDLLLVFARKK 162
+ + RR D++++ RK+
Sbjct: 931 AGEGREAKETDPGSPRRCDIIVISGRKE 958
>sp|B2U7R6|PNP_RALPJ Polyribonucleotide nucleotidyltransferase OS=Ralstonia pickettii
(strain 12J) GN=pnp PE=3 SV=1
Length = 724
Score = 36.2 bits (82), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Query: 105 IIGVKGSTKRRIESETNTQLSIPRQGQTGDIIISSYSERGIASAKRRLD 153
+IG GST + + ET + I G+ G I I+S S G+A AKRR++
Sbjct: 570 VIGKGGSTIQALTKETGCTIDI---GEDGTITIASTSSEGMAEAKRRIE 615
>sp|A9A5C8|ECR1_NITMS Probable exosome complex RNA-binding protein 1 OS=Nitrosopumilus
maritimus (strain SCM1) GN=Nmar_0431 PE=3 SV=1
Length = 226
Score = 35.8 bits (81), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Query: 96 HIPKSFYPFIIGVKGSTKRRIESETNTQLSIPRQGQTGDIIISSYSERGIASAKRRLDLL 155
I S P +IG KGS + IE T+ ++I GQ G +++S S G+ AK+ + ++
Sbjct: 147 EISPSKVPRLIGKKGSMIQMIEEATDAAVTI---GQNGWVVVSCESPEGLLKAKKAIQMV 203
>sp|B3QY14|PNP_CHLT3 Polyribonucleotide nucleotidyltransferase OS=Chloroherpeton
thalassium (strain ATCC 35110 / GB-78) GN=pnp PE=3 SV=1
Length = 729
Score = 35.8 bits (81), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Query: 96 HIPKSFYPFIIGVKGSTKRRIESETNTQLSIPRQGQTGDIIISSYSERGIASAKRRLDLL 155
IP +IG G T R + SETNT++ I G + I+S S G A+A + LL
Sbjct: 576 QIPVDAIGAVIGKGGETIRALTSETNTEIDI---ADDGTVTIASVSSEGSAAAVDAIKLL 632
Query: 156 L 156
+
Sbjct: 633 V 633
>sp|P81021|VIGLN_CHICK Vigilin OS=Gallus gallus GN=HDLBP PE=2 SV=1
Length = 1270
Score = 35.4 bits (80), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Query: 90 QYKYQCHIPKSFYPFIIGVKGSTKRRIESETNTQLSIPRQGQTGDIIISSYSERGIASAK 149
Q IPK + F+IG G + +E +T T++ IPR + I + ++ GI A
Sbjct: 149 QASATVAIPKEHHRFVIGKNGEKLQDLELKTATKIQIPRPDDPSNQIKITGTKEGIEKA- 207
Query: 150 RRLDLLLVFARK 161
R ++LL+ A +
Sbjct: 208 -RHEILLISAEQ 218
>sp|B3R3W3|PNP_CUPTR Polyribonucleotide nucleotidyltransferase OS=Cupriavidus
taiwanensis (strain R1 / LMG 19424) GN=pnp PE=3 SV=1
Length = 723
Score = 35.0 bits (79), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Query: 105 IIGVKGSTKRRIESETNTQLSIPRQGQTGDIIISSYSERGIASAKRRLD 153
+IG GST + + ET T + I + G I I+S S G+A AKRR++
Sbjct: 570 VIGKGGSTIQALTKETGTTIDIQ---EDGTITIASTSTEGMAEAKRRIE 615
>sp|Q09285|YQK1_CAEEL KH domain-containing protein C56G2.1 OS=Caenorhabditis elegans
GN=C56G2.1/C56G2.2 PE=4 SV=2
Length = 867
Score = 35.0 bits (79), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 9/83 (10%)
Query: 53 QRSEYDAGCPGGNQPYEEDDGGLSEDEDLDIYLGKDGQYKYQCHIPKSFYPFIIGVKGST 112
+ S D+G G +DG +ED+ L +Y + IP S IIGVKG T
Sbjct: 500 EASSQDSGRATGPLASPHEDGLTTEDDFLPMY---------EFEIPNSLVGLIIGVKGKT 550
Query: 113 KRRIESETNTQLSIPRQGQTGDI 135
+ + TN ++ I + +T +
Sbjct: 551 IKELSVRTNVRMLIRQHHETDKV 573
>sp|Q473U7|PNP_CUPPJ Polyribonucleotide nucleotidyltransferase OS=Cupriavidus
pinatubonensis (strain JMP134 / LMG 1197) GN=pnp PE=3
SV=1
Length = 728
Score = 34.3 bits (77), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Query: 105 IIGVKGSTKRRIESETNTQLSIPRQGQTGDIIISSYSERGIASAKRRLD 153
+IG GST + + ET T + I + G I I+S S G+A AKRR++
Sbjct: 570 VIGKGGSTIQALTKETGTTIDIQ---EDGTITIASTSTDGMAEAKRRIE 615
>sp|Q0KCT4|PNP_CUPNH Polyribonucleotide nucleotidyltransferase OS=Cupriavidus necator
(strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=pnp
PE=3 SV=1
Length = 723
Score = 34.3 bits (77), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Query: 105 IIGVKGSTKRRIESETNTQLSIPRQGQTGDIIISSYSERGIASAKRRLD 153
+IG GST + + ET T + I + G I I+S S G+A AKRR++
Sbjct: 570 VIGKGGSTIQALTKETGTTIDIQ---EDGTITIASTSTDGMAEAKRRIE 615
>sp|Q1LPW7|PNP_RALME Polyribonucleotide nucleotidyltransferase OS=Ralstonia
metallidurans (strain CH34 / ATCC 43123 / DSM 2839)
GN=pnp PE=3 SV=1
Length = 725
Score = 34.3 bits (77), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Query: 105 IIGVKGSTKRRIESETNTQLSIPRQGQTGDIIISSYSERGIASAKRRLD 153
+IG GST + + ET T + I + G I I+S S G+A AKRR++
Sbjct: 570 VIGKGGSTIQALTKETGTTIDIQ---EDGTITIASTSTDGMAEAKRRIE 615
>sp|B7LT32|NAGZ_ESCF3 Beta-hexosaminidase OS=Escherichia fergusonii (strain ATCC 35469 /
DSM 13698 / CDC 0568-73) GN=nagZ PE=3 SV=1
Length = 341
Score = 33.9 bits (76), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
Query: 133 GDIIISSYSERGIASAKRRLDLLLVFARKKIPYTHLLSI-PMNVPNIQENFAK--FKATV 189
G I+ SY+ERG AS D++LV +K + L ++ P+N P + + K F
Sbjct: 254 GAAIMGSYAERGQASLDAGCDMILVCNNRKGATSVLDNLSPINAPRVTRLYHKGSFSRQE 313
Query: 190 LSDFSRCRGIEESLFQ 205
L D R + I L Q
Sbjct: 314 LMDSPRWKNISAQLNQ 329
>sp|O59810|VGL1_SCHPO Vigilin 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=vgl1 PE=1 SV=2
Length = 1291
Score = 33.9 bits (76), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 27/47 (57%)
Query: 81 LDIYLGKDGQYKYQCHIPKSFYPFIIGVKGSTKRRIESETNTQLSIP 127
L+I Q + + +P+ IIG GST+R IE +T+T L+IP
Sbjct: 1041 LEIVEELKNQVEEKIEVPQRCISSIIGRMGSTRRDIERKTSTMLNIP 1087
Score = 33.5 bits (75), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 45/92 (48%), Gaps = 14/92 (15%)
Query: 94 QCHIPKSFYPFIIGVKGSTKRRIESETNTQLSIPRQ----GQTGDIIISSYS-------- 141
+ +IP F+ +IG G RR+E + + ++ PR+ TG+ ++ S
Sbjct: 812 RVNIPNDFHRQLIGSNGKYVRRLEEKFSVRVRFPREDDSSNSTGNELMKPTSPDEVVIRG 871
Query: 142 -ERGIASAKRRLDLLLVFARKKIPYTHLLSIP 172
++ +A+AK+ L L L K I YT + IP
Sbjct: 872 GKKSVAAAKQEL-LELYEYEKSIAYTSTIDIP 902
>sp|Q08D62|MAEL_XENTR Protein maelstrom homolog OS=Xenopus tropicalis GN=mael PE=2 SV=1
Length = 415
Score = 33.9 bits (76), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 9/55 (16%)
Query: 21 VNPKIEIIDGRRY-RVNPSWPSTYEDKSEADPYQRSEYDAGCPGGNQPYEEDDGG 74
VNPK+ ++D +R+ RV S P DKSE RS ++ P G +PY+ GG
Sbjct: 350 VNPKVVVLDAKRFQRVCSSDPKYSTDKSE-----RSSFE---PRGVKPYQGPSGG 396
>sp|Q8XXP6|PNP_RALSO Polyribonucleotide nucleotidyltransferase OS=Ralstonia solanacearum
(strain GMI1000) GN=pnp PE=3 SV=1
Length = 717
Score = 33.1 bits (74), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Query: 105 IIGVKGSTKRRIESETNTQLSIPRQGQTGDIIISSYSERGIASAKRRLD 153
+IG GST + + ET + I + G I I+S S G+A AKRR++
Sbjct: 568 VIGKGGSTIQALTKETGCTIDIQ---EDGTITIASTSSEGMAEAKRRIE 613
>sp|A9BNB8|PNP_DELAS Polyribonucleotide nucleotidyltransferase OS=Delftia acidovorans
(strain DSM 14801 / SPH-1) GN=pnp PE=3 SV=1
Length = 753
Score = 33.1 bits (74), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 105 IIGVKGSTKRRIESETNTQLSIPRQGQTGDIIISSYSERGIASAKRRLD 153
+IG GST R + ET TQ+ I G+ G I I+S AKRR++
Sbjct: 570 VIGKGGSTIRALTEETGTQIDI---GEDGTITIASSDAAKADEAKRRIE 615
>sp|Q7NY10|PNP_CHRVO Polyribonucleotide nucleotidyltransferase OS=Chromobacterium
violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249 /
NBRC 12614 / NCIMB 9131 / NCTC 9757) GN=pnp PE=3 SV=1
Length = 722
Score = 33.1 bits (74), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 11/78 (14%)
Query: 88 DGQYKYQCHIPKSFYPFI--------IGVKGSTKRRIESETNTQLSIPRQGQTGDIIISS 139
DG + H P+ + I IG G T R I +T +++I + G I I+S
Sbjct: 551 DGPQELSAHAPRLYVMKINPEKIREVIGKGGETIRSITKDTGCEINIE---EDGTITIAS 607
Query: 140 YSERGIASAKRRLDLLLV 157
S G +AK+R++ + V
Sbjct: 608 VSSEGAEAAKKRIEEITV 625
>sp|Q05A36|MEX3C_MOUSE RNA-binding E3 ubiquitin-protein ligase MEX3C OS=Mus musculus
GN=Mex3c PE=2 SV=2
Length = 652
Score = 32.7 bits (73), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 6/55 (10%)
Query: 73 GGLSEDEDLDIYLGKDGQYKYQCHIPKSFYPFIIGVKGSTKRRIESETNTQLSIP 127
GGLS +L GQ Q +P ++G KG+T +RI+ +T+T + P
Sbjct: 308 GGLSCSPNLP------GQTTVQVRVPYRVVGLVVGPKGATIKRIQQQTHTYIVTP 356
>sp|Q5U5Q3|MEX3C_HUMAN RNA-binding E3 ubiquitin-protein ligase MEX3C OS=Homo sapiens
GN=MEX3C PE=1 SV=3
Length = 659
Score = 32.7 bits (73), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 6/55 (10%)
Query: 73 GGLSEDEDLDIYLGKDGQYKYQCHIPKSFYPFIIGVKGSTKRRIESETNTQLSIP 127
GGLS +L GQ Q +P ++G KG+T +RI+ +T+T + P
Sbjct: 315 GGLSCSPNLP------GQTTVQVRVPYRVVGLVVGPKGATIKRIQQQTHTYIVTP 363
>sp|P43296|RD19A_ARATH Cysteine proteinase RD19a OS=Arabidopsis thaliana GN=RD19A PE=2
SV=1
Length = 368
Score = 32.7 bits (73), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 30/57 (52%), Gaps = 8/57 (14%)
Query: 48 EADPYQRSEYDAGCPGG--NQPYEE--DDGGLSEDEDLDIYLGKDGQYKYQCHIPKS 100
E DP + D+GC GG N +E GGL ++ED Y GKDG+ C + KS
Sbjct: 193 ECDPEEADSCDSGCNGGLMNSAFEYTLKTGGLMKEEDYP-YTGKDGK---TCKLDKS 245
>sp|B1HVC0|MINC_LYSSC Probable septum site-determining protein MinC OS=Lysinibacillus
sphaericus (strain C3-41) GN=minC PE=3 SV=1
Length = 222
Score = 32.7 bits (73), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 38/82 (46%), Gaps = 16/82 (19%)
Query: 72 DGGLSEDEDLDIYLG----KDGQYKYQCHIPKSFYPFIIG--------VKGSTKRRIESE 119
+GG+ D+ +YLG D Q HI + I+ V S ++ IES+
Sbjct: 38 EGGIDGKVDVQLYLGYRYCTDEQIDELIHIVQETEQLIVASVQSEVLTVHESNQKMIESQ 97
Query: 120 TNTQLSIPRQGQ----TGDIII 137
+T L + R GQ +GDIII
Sbjct: 98 QDTYLGVVRSGQILRSSGDIII 119
>sp|Q0BDC6|PNP_BURCM Polyribonucleotide nucleotidyltransferase OS=Burkholderia ambifaria
(strain ATCC BAA-244 / AMMD) GN=pnp PE=3 SV=1
Length = 714
Score = 32.3 bits (72), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Query: 105 IIGVKGSTKRRIESETNTQLSIPRQGQTGDIIISSYSERGIASAKRRLDLLLV 157
+IG GS R + ET T + I G + I+S S G+A AK+R++ + V
Sbjct: 575 VIGKGGSVIRALTEETGTTIDISDDGV---VTIASTSSEGMAEAKKRIENITV 624
>sp|B1YTR1|PNP_BURA4 Polyribonucleotide nucleotidyltransferase OS=Burkholderia ambifaria
(strain MC40-6) GN=pnp PE=3 SV=1
Length = 714
Score = 32.3 bits (72), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Query: 105 IIGVKGSTKRRIESETNTQLSIPRQGQTGDIIISSYSERGIASAKRRLDLLLV 157
+IG GS R + ET T + I G + I+S S G+A AK+R++ + V
Sbjct: 575 VIGKGGSVIRALTEETGTTIDISDDGV---VTIASTSSEGMAEAKKRIENITV 624
>sp|Q9CPN8|IF2B3_MOUSE Insulin-like growth factor 2 mRNA-binding protein 3 OS=Mus musculus
GN=Igf2bp3 PE=1 SV=1
Length = 579
Score = 32.3 bits (72), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Query: 97 IPKSFYPFIIGVKGSTKRRIESETNTQLSIPRQGQTG----DIIISSYSERGIASAKRRL 152
+P F IIG +G+T R I +T +++ + R+ TG I I S E A+ K L
Sbjct: 202 VPTQFVGAIIGKEGATIRNITKQTQSKIDVHRKENTGAAEKSITILSTPEGTSAACKSIL 261
Query: 153 DLL 155
+++
Sbjct: 262 EIM 264
>sp|Q9BXU7|UBP26_HUMAN Ubiquitin carboxyl-terminal hydrolase 26 OS=Homo sapiens GN=USP26
PE=1 SV=1
Length = 913
Score = 32.3 bits (72), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 24/44 (54%)
Query: 274 VDDSGLVQKLCDDVVQYFISQHLISKAYQKYDTVKMHVTLMNSK 317
+DD GL+Q L + +V F+ Q S Y K+D +K+ L K
Sbjct: 249 LDDIGLLQALTEKMVLVFLLQQGYSDGYTKWDKLKLFFELFPEK 292
>sp|A4JGD4|PNP_BURVG Polyribonucleotide nucleotidyltransferase OS=Burkholderia
vietnamiensis (strain G4 / LMG 22486) GN=pnp PE=3 SV=1
Length = 715
Score = 32.0 bits (71), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 105 IIGVKGSTKRRIESETNTQLSIPRQGQTGDIIISSYSERGIASAKRRLD 153
+IG GS R + ET T + I G + I+S S G+A AK+R++
Sbjct: 575 VIGKGGSVIRALTEETGTTIDISDDGV---VTIASTSSEGMAEAKKRIE 620
>sp|B1GZG8|PNP_UNCTG Polyribonucleotide nucleotidyltransferase OS=Uncultured termite
group 1 bacterium phylotype Rs-D17 GN=pnp PE=3 SV=1
Length = 689
Score = 32.0 bits (71), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Query: 97 IPKSFYPFIIGVKGSTKRRIESETNTQLSIPRQGQTGDIIISSYSERGIASAKRRLDLLL 156
IP++ +IG G R+I+ + N ++ I +TG + IS G+ SAK ++ L
Sbjct: 556 IPQNKIGELIGPGGKNIRKIQEDNNVKIDIE---ETGRVFISGVESDGVKSAKEYVECLT 612
Query: 157 VFA 159
V A
Sbjct: 613 VEA 615
>sp|A0K927|PNP_BURCH Polyribonucleotide nucleotidyltransferase OS=Burkholderia
cenocepacia (strain HI2424) GN=pnp PE=3 SV=1
Length = 715
Score = 32.0 bits (71), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 105 IIGVKGSTKRRIESETNTQLSIPRQGQTGDIIISSYSERGIASAKRRLD 153
+IG GS R + ET T + I G + I+S S G+A AK+R++
Sbjct: 575 VIGKGGSVIRALTEETGTTIDISDDGV---VTIASTSSEGMAEAKKRIE 620
>sp|Q1BV09|PNP_BURCA Polyribonucleotide nucleotidyltransferase OS=Burkholderia
cenocepacia (strain AU 1054) GN=pnp PE=3 SV=1
Length = 715
Score = 32.0 bits (71), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 105 IIGVKGSTKRRIESETNTQLSIPRQGQTGDIIISSYSERGIASAKRRLD 153
+IG GS R + ET T + I G + I+S S G+A AK+R++
Sbjct: 575 VIGKGGSVIRALTEETGTTIDISDDGV---VTIASTSSEGMAEAKKRIE 620
>sp|B1JVP5|PNP_BURCC Polyribonucleotide nucleotidyltransferase OS=Burkholderia
cenocepacia (strain MC0-3) GN=pnp PE=3 SV=1
Length = 715
Score = 32.0 bits (71), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 105 IIGVKGSTKRRIESETNTQLSIPRQGQTGDIIISSYSERGIASAKRRLD 153
+IG GS R + ET T + I G + I+S S G+A AK+R++
Sbjct: 575 VIGKGGSVIRALTEETGTTIDISDDGV---VTIASTSSEGMAEAKKRIE 620
>sp|B2T2E3|PNP_BURPP Polyribonucleotide nucleotidyltransferase OS=Burkholderia
phytofirmans (strain DSM 17436 / PsJN) GN=pnp PE=3 SV=1
Length = 718
Score = 32.0 bits (71), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 105 IIGVKGSTKRRIESETNTQLSIPRQGQTGDIIISSYSERGIASAKRRLD 153
+IG GS R + ET T + I G + I+S S G+A AK+R++
Sbjct: 575 VIGKGGSVIRALTEETGTTIDISDDGV---VTIASTSSEGMAEAKKRIE 620
>sp|Q142H7|PNP_BURXL Polyribonucleotide nucleotidyltransferase OS=Burkholderia
xenovorans (strain LB400) GN=pnp PE=3 SV=1
Length = 716
Score = 32.0 bits (71), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 105 IIGVKGSTKRRIESETNTQLSIPRQGQTGDIIISSYSERGIASAKRRLD 153
+IG GS R + ET T + I G + I+S S G+A AK+R++
Sbjct: 575 VIGKGGSVIRALTEETGTTIDISDDGV---VTIASTSSEGMAEAKKRIE 620
>sp|A9AJP0|PNP_BURM1 Polyribonucleotide nucleotidyltransferase OS=Burkholderia
multivorans (strain ATCC 17616 / 249) GN=pnp PE=3 SV=1
Length = 715
Score = 32.0 bits (71), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 105 IIGVKGSTKRRIESETNTQLSIPRQGQTGDIIISSYSERGIASAKRRLD 153
+IG GS R + ET T + I G + I+S S G+A AK+R++
Sbjct: 575 VIGKGGSVIRALTEETGTTIDISDDGV---VTIASTSSEGMAEAKKRIE 620
>sp|B2JDN2|PNP_BURP8 Polyribonucleotide nucleotidyltransferase OS=Burkholderia phymatum
(strain DSM 17167 / STM815) GN=pnp PE=3 SV=1
Length = 712
Score = 32.0 bits (71), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 105 IIGVKGSTKRRIESETNTQLSIPRQGQTGDIIISSYSERGIASAKRRLD 153
+IG GS R + ET T + I G + I+S S G+A AK+R++
Sbjct: 575 VIGKGGSVIRALTEETGTTIDISDDGV---VTIASTSSEGMAEAKKRIE 620
>sp|P25804|CYSP_PEA Cysteine proteinase 15A OS=Pisum sativum PE=2 SV=1
Length = 363
Score = 32.0 bits (71), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 5/49 (10%)
Query: 49 ADPYQRSEYDAGCPGG--NQPYEE--DDGGLSEDEDLDIYLGKDGQYKY 93
DP Q D+GC GG N +E + GG+ +++D Y G+DG K+
Sbjct: 191 CDPEQAGSCDSGCNGGLMNNAFEYLLESGGVVQEKDY-AYTGRDGSCKF 238
>sp|Q87EV0|PNP_XYLFT Polyribonucleotide nucleotidyltransferase OS=Xylella fastidiosa
(strain Temecula1 / ATCC 700964) GN=pnp PE=3 SV=2
Length = 700
Score = 31.6 bits (70), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 105 IIGVKGSTKRRIESETNTQLSIPRQGQTGDIIISSYSERGIASAKRRLD 153
+IG GST + I ET TQ+ I G I+I+S + AKRR++
Sbjct: 569 VIGKGGSTIQAITKETGTQIDIQ---DDGTIVIASVNNAAAREAKRRIE 614
>sp|B2I730|PNP_XYLF2 Polyribonucleotide nucleotidyltransferase OS=Xylella fastidiosa
(strain M23) GN=pnp PE=3 SV=1
Length = 700
Score = 31.6 bits (70), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 105 IIGVKGSTKRRIESETNTQLSIPRQGQTGDIIISSYSERGIASAKRRLD 153
+IG GST + I ET TQ+ I G I+I+S + AKRR++
Sbjct: 569 VIGKGGSTIQAITKETGTQIDIQ---DDGTIVIASVNNAAAREAKRRIE 614
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.137 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 146,936,565
Number of Sequences: 539616
Number of extensions: 6466294
Number of successful extensions: 14796
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 53
Number of HSP's that attempted gapping in prelim test: 14713
Number of HSP's gapped (non-prelim): 122
length of query: 380
length of database: 191,569,459
effective HSP length: 119
effective length of query: 261
effective length of database: 127,355,155
effective search space: 33239695455
effective search space used: 33239695455
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)