Query psy2081
Match_columns 380
No_of_seqs 275 out of 832
Neff 6.8
Searched_HMMs 29240
Date Fri Aug 16 23:49:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2081.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2081hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vfk_A AKAP18 delta; APO, hydr 100.0 1.4E-30 4.9E-35 237.7 18.7 197 164-380 2-201 (205)
2 1vgj_A Hypothetical protein PH 100.0 9E-30 3.1E-34 228.2 18.5 182 165-380 1-182 (184)
3 1iuh_A 2'-5' RNA ligase; riken 99.9 1.3E-25 4.5E-30 204.5 14.6 173 165-380 1-179 (198)
4 2d4g_A Hypothetical protein BS 99.9 7.6E-22 2.6E-26 174.6 14.9 166 165-380 1-167 (171)
5 1jh6_A Cyclic phosphodiesteras 99.8 1.9E-18 6.6E-23 156.2 14.7 171 164-380 7-179 (189)
6 2cte_A Vigilin; K homology typ 99.6 2.4E-15 8.3E-20 121.3 7.6 81 82-163 8-89 (94)
7 2dgr_A Ring finger and KH doma 99.5 9.6E-15 3.3E-19 115.1 5.2 71 87-158 6-76 (83)
8 2ctl_A Vigilin; K homology typ 99.5 8.3E-14 2.8E-18 112.9 7.8 70 90-160 16-89 (97)
9 2ctm_A Vigilin; K homology typ 99.5 8.1E-14 2.8E-18 112.6 7.2 78 82-160 8-87 (95)
10 1vig_A Vigilin; RNA-binding pr 99.4 9.8E-14 3.4E-18 106.1 5.8 65 91-156 5-70 (71)
11 2ctj_A Vigilin; K homology typ 99.4 6.8E-14 2.3E-18 113.0 4.8 77 83-160 9-87 (95)
12 2ctf_A Vigilin; K homology typ 99.4 2.7E-13 9.1E-18 110.9 7.5 79 82-163 18-97 (102)
13 2ctk_A Vigilin; K homology typ 99.4 3E-13 1E-17 111.0 6.0 69 91-160 17-86 (104)
14 3n89_A Defective in GERM LINE 99.3 5.1E-12 1.7E-16 124.8 12.1 71 85-156 24-104 (376)
15 1zzk_A Heterogeneous nuclear r 99.3 4.3E-12 1.5E-16 99.5 7.7 72 88-160 4-78 (82)
16 2opv_A KHSRP protein; KH domai 99.3 3.9E-12 1.3E-16 100.4 7.2 67 91-158 14-85 (85)
17 1dtj_A RNA-binding neurooncolo 99.3 3.6E-12 1.2E-16 98.3 6.0 67 91-158 3-75 (76)
18 1x4m_A FAR upstream element bi 99.3 3.1E-12 1.1E-16 103.0 4.4 70 89-159 13-87 (94)
19 1wvn_A Poly(RC)-binding protei 99.2 7.4E-12 2.5E-16 98.1 5.6 71 88-159 3-76 (82)
20 2axy_A Poly(RC)-binding protei 99.2 6.1E-12 2.1E-16 96.5 4.6 70 88-158 2-72 (73)
21 1x4n_A FAR upstream element bi 99.2 9.3E-12 3.2E-16 99.8 5.8 72 89-161 13-87 (92)
22 1we8_A Tudor and KH domain con 99.2 1.4E-11 4.9E-16 100.9 6.2 70 89-159 13-87 (104)
23 2p2r_A Poly(RC)-binding protei 99.2 8.9E-12 3E-16 96.2 4.5 68 90-158 4-74 (76)
24 1j5k_A Heterogeneous nuclear r 99.2 8.6E-12 2.9E-16 99.3 4.3 70 89-159 12-84 (89)
25 2hh3_A KH-type splicing regula 99.2 1.7E-11 5.7E-16 100.9 6.2 69 91-160 11-82 (106)
26 1k1g_A SF1-BO isoform; splicin 99.2 1.5E-11 5.1E-16 104.9 5.7 70 89-158 5-99 (131)
27 1ec6_A RNA-binding protein NOV 99.2 7.7E-12 2.6E-16 99.1 3.0 69 91-160 3-77 (87)
28 2cpq_A FragIle X mental retard 99.2 6.9E-12 2.4E-16 100.0 2.4 70 88-159 12-82 (91)
29 2hh2_A KH-type splicing regula 99.2 2.5E-11 8.7E-16 99.9 5.7 68 91-159 7-80 (107)
30 2jzx_A Poly(RC)-binding protei 99.1 7.4E-11 2.5E-15 103.3 7.2 139 88-235 2-156 (160)
31 3krm_A Insulin-like growth fac 99.1 1.5E-10 5.2E-15 101.6 8.7 137 91-235 3-153 (163)
32 2jvz_A KH type-splicing, FAR u 99.1 4E-10 1.4E-14 98.7 10.5 137 91-235 2-157 (164)
33 1j4w_A FUSE binding protein; s 99.1 1.8E-10 6.1E-15 102.3 8.2 139 89-235 1-173 (174)
34 2anr_A Neuro-oncological ventr 99.1 2.3E-10 7.8E-15 101.9 8.0 140 88-235 3-172 (178)
35 3krm_A Insulin-like growth fac 99.1 1.9E-10 6.5E-15 100.9 7.2 74 89-163 83-161 (163)
36 2yqr_A KIAA0907 protein; struc 99.1 3.5E-10 1.2E-14 94.7 8.2 82 91-191 12-113 (119)
37 2jvz_A KH type-splicing, FAR u 98.9 4.2E-10 1.4E-14 98.5 3.4 68 91-159 91-161 (164)
38 2jzx_A Poly(RC)-binding protei 98.8 1.3E-09 4.4E-14 95.3 4.2 68 90-158 88-159 (160)
39 1j4w_A FUSE binding protein; s 98.8 2E-09 6.9E-14 95.5 4.7 66 90-156 103-174 (174)
40 2anr_A Neuro-oncological ventr 98.8 1.7E-09 5.8E-14 96.2 3.1 69 89-158 102-175 (178)
41 3n89_A Defective in GERM LINE 98.7 6.6E-09 2.3E-13 102.6 5.2 67 89-156 184-259 (376)
42 2qnd_A FMR1 protein; KH domain 98.6 1.3E-08 4.3E-13 88.1 3.8 66 93-159 69-143 (144)
43 2bl5_A MGC83862 protein, quaki 98.6 4.5E-08 1.5E-12 84.0 5.3 67 91-157 2-100 (140)
44 2e3u_A PH-DIM2P, hypothetical 98.5 4.3E-08 1.5E-12 90.5 4.6 63 92-156 35-101 (219)
45 3u1k_A Polyribonucleotide nucl 98.5 2.5E-08 8.4E-13 105.0 2.5 64 90-156 566-629 (630)
46 4aid_A Polyribonucleotide nucl 98.2 3.6E-07 1.2E-11 97.3 1.2 66 91-159 570-635 (726)
47 2e3u_A PH-DIM2P, hypothetical 98.1 2.7E-06 9.4E-11 78.3 5.8 54 101-159 139-192 (219)
48 2qnd_A FMR1 protein; KH domain 97.9 3.1E-06 1.1E-10 72.9 2.7 129 89-235 2-139 (144)
49 1tua_A Hypothetical protein AP 97.8 1.6E-05 5.5E-10 71.6 4.7 65 92-158 5-73 (191)
50 1tua_A Hypothetical protein AP 97.8 3.2E-05 1.1E-09 69.6 6.2 54 100-158 107-160 (191)
51 2fsq_A ATU0111 protein; alpha- 97.7 0.00012 3.9E-09 68.4 9.0 168 166-364 43-227 (243)
52 3v69_A Protein filia; RNA-bind 97.7 4E-05 1.4E-09 64.8 5.1 69 93-162 58-128 (140)
53 3cdi_A Polynucleotide phosphor 97.1 8.2E-05 2.8E-09 79.5 0.0 65 91-158 560-624 (723)
54 1e3p_A Guanosine pentaphosphat 96.8 5.5E-05 1.9E-09 81.1 -3.9 63 91-156 598-660 (757)
55 2z0s_A Probable exosome comple 86.7 0.99 3.4E-05 41.4 6.1 64 93-159 150-213 (235)
56 2ja9_A Exosome complex exonucl 84.9 0.46 1.6E-05 41.8 2.7 58 94-154 94-152 (175)
57 2ba0_A Archeal exosome RNA bin 84.6 1.5 5.1E-05 40.1 6.1 81 93-191 138-218 (229)
58 2cxc_A NUSA; transcription ter 77.4 1 3.5E-05 38.3 2.1 36 92-127 37-72 (144)
59 2nn6_G Exosome complex exonucl 74.2 0.68 2.3E-05 44.0 0.2 59 94-155 213-271 (289)
60 2cxc_A NUSA; transcription ter 70.7 0.86 2.9E-05 38.8 -0.0 40 88-127 100-139 (144)
61 2je6_I RRP4, exosome complex R 67.0 0.43 1.5E-05 44.4 -2.9 60 93-155 157-216 (251)
62 2kqb_A Aprataxin and PNK-like 53.1 1.9 6.5E-05 33.5 -1.0 19 27-45 18-36 (89)
63 2asb_A Transcription elongatio 49.0 6.8 0.00023 36.3 1.9 38 91-128 184-221 (251)
64 1hh2_P NUSA, N utilization sub 48.4 8.4 0.00029 37.3 2.5 45 83-127 295-339 (344)
65 1wh9_A 40S ribosomal protein S 43.5 5.3 0.00018 31.2 0.2 39 82-123 29-67 (92)
66 1j26_A Immature colon carcinom 42.3 10 0.00035 30.7 1.7 66 83-160 37-107 (112)
67 2pt7_G HP1451, hypothetical pr 41.9 7.3 0.00025 33.3 0.8 34 92-125 34-67 (152)
68 2kuo_A Aprataxin and PNK-like 41.6 1.7 6E-05 33.9 -2.8 17 27-43 23-39 (91)
69 1k0r_A NUSA; two component arr 39.3 11 0.00039 36.7 1.8 39 90-128 306-344 (366)
70 1jh6_A Cyclic phosphodiesteras 38.6 55 0.0019 28.0 6.1 44 260-314 2-46 (189)
71 3eik_A Tata-box-binding protei 38.2 31 0.0011 31.1 4.4 31 131-161 186-217 (218)
72 2jva_A Peptidyl-tRNA hydrolase 37.8 27 0.00093 27.9 3.6 30 132-161 67-100 (108)
73 3i0u_A Phosphothreonine lyase 34.6 1.2E+02 0.004 26.9 7.3 76 208-298 80-171 (218)
74 1ytb_A Protein (tata binding p 34.0 41 0.0014 29.3 4.4 31 131-161 148-179 (180)
75 1go3_E DNA-directed RNA polyme 32.3 22 0.00076 30.7 2.4 42 91-138 7-60 (187)
76 4dh9_Y YAEJ; ribosome, YAEJ, r 32.1 45 0.0016 27.9 4.2 56 107-164 24-103 (140)
77 2o5a_A BH1328 protein; BHR21, 29.3 2.3E+02 0.0078 23.0 8.0 62 223-298 5-66 (125)
78 3bo6_A Hydrophilic protein, VI 27.3 1.2E+02 0.0041 26.9 6.1 79 208-298 82-173 (220)
79 1rm1_A Tata-box binding protei 26.0 67 0.0023 29.3 4.5 31 131-161 208-239 (240)
80 3u5c_D RP13, YS3, 40S ribosoma 25.5 18 0.00062 33.1 0.6 43 82-127 38-80 (240)
81 2id1_A Hypothetical protein; a 24.5 2.8E+02 0.0094 22.7 7.7 61 224-298 6-66 (130)
82 2z8u_A Tata-box-binding protei 24.1 70 0.0024 28.0 4.2 30 131-160 156-186 (188)
83 2fsq_A ATU0111 protein; alpha- 23.7 89 0.003 28.5 4.9 56 176-236 150-206 (243)
84 3j21_F 50S ribosomal protein L 23.5 95 0.0033 27.1 4.9 44 120-169 126-169 (184)
85 3tdq_A PILY2 protein; fimbiria 23.2 42 0.0014 25.9 2.2 16 24-39 21-37 (98)
86 1otg_A 5-carboxymethyl-2-hydro 22.5 63 0.0021 26.0 3.3 28 209-236 60-87 (125)
87 2i3e_A G-rich; rich protein, C 21.7 77 0.0026 28.3 3.8 80 177-274 38-117 (222)
88 1ytb_A Protein (tata binding p 21.5 1.2E+02 0.0041 26.3 5.1 38 121-161 50-88 (180)
89 2xzm_C KH domain containing pr 21.1 32 0.0011 31.6 1.3 42 82-126 41-82 (243)
90 3j20_C 30S ribosomal protein S 21.0 29 0.00098 31.2 1.0 39 82-123 34-72 (210)
No 1
>2vfk_A AKAP18 delta; APO, hydrolase; HET: AMP; 1.50A {Homo sapiens} PDB: 2vfl_A* 2vfy_A
Probab=99.97 E-value=1.4e-30 Score=237.70 Aligned_cols=197 Identities=17% Similarity=0.316 Sum_probs=158.5
Q ss_pred CcceeeeccCCChhHHHHHHHHHHHHhcccCcCCCCccccccCCCCceeeEEeeccCCchhHHHHHHHHHhhcccccccc
Q psy2081 164 PYTHLLSIPMNVPNIQENFAKFKATVLSDFSRCRGIEESLFQEPGRLHITMGMLMLADSVERDQAVEVLQKCGNNIILPI 243 (380)
Q Consensus 164 ~~thFIaIpl~~~~I~~~~~~fq~~v~~~~~~~~gi~~~~fv~p~~LHLTL~~L~l~~~~ev~~A~~~L~~~~~~~i~~~ 243 (380)
++|+||||+++++++++.+.++++.+....+ +. ...|++++++||||.||+++++++++++.++|.++.. .++++
T Consensus 2 ~~r~Fial~~~~~~~~~~l~~~~~~l~~~~~---~~-~~~~v~~~~~HiTL~flg~~~~~~~~~l~~~l~~~~~-~~~~~ 76 (205)
T 2vfk_A 2 QPNYFLSIPITNKKITAGIKVLQNSILRQDN---RL-TKAMVGDGSFHITLLVMQLLNEDEVNIGTDALLELKP-FVEEI 76 (205)
T ss_dssp CCCEEEEEECCCHHHHHHHHHHHHHHHHHCG---GG-GGGBCCTTCCEEEEEEECCCSHHHHHHHHHHHHHHHH-HHHHH
T ss_pred CCCEEEEEEcCCHHHHHHHHHHHHHHHhcCc---ch-HHHhCCcCccEEEEEEEEcCCHHHHHHHHHHHHHHHH-HHHHH
Confidence 5799999999976899999999999975321 22 2479999999999999999999999999999988742 11223
Q ss_pred cccCceEEEecceecCCCCCCceeEEEEEecCC--hHHHHHHHHHHHHHHHHCCCccccccCCCceeeEEEeeccccccc
Q psy2081 244 LRSQRIKINLKGLEIMNDDPAEVDILYAKVVDD--SGLVQKLCDDVVQYFISQHLISKAYQKYDTVKMHVTLMNSKYRMR 321 (380)
Q Consensus 244 ~~~~pf~l~l~Glg~F~ddp~~~rVLya~v~d~--~~~Lq~L~~~l~~~f~~~Gl~~~~~~e~r~fkpHiTL~nt~~r~~ 321 (380)
+...||.|+++|+++|++ +|||++|.++ .+.|++|++.|.+.|..+|+.. .+.++|+||+||+|.++...
T Consensus 77 ~~~~pf~l~l~g~~~F~~-----~vl~~~v~~~~~~~~L~~L~~~l~~~~~~~g~~~---~~~~~f~PHiTlar~~~~~~ 148 (205)
T 2vfk_A 77 LEGKHLTLPFHGIGTFQG-----QVGFVKLADGDHVSALLEIAETAKRTFQEKGILA---GESRTFKPHLTFMKLSKAPM 148 (205)
T ss_dssp TTTSCCEEEEEEEEEETT-----TEEEEEECCSHHHHHHHHHHHHHHHHHHTTTCCB---CCSSCCCCCEEEEEGGGCHH
T ss_pred hCCCCcEEEEechhhCCC-----cEEEEeecccccHHHHHHHHHHHHHHHHHcCCCc---CCCCCcceEEEEEecccchh
Confidence 344899999999999993 7999999853 4789999999999999999964 37789999999998754210
Q ss_pred CCCCCCCCccccCcCCHHHHHHHhCCceeceEEeeEEEEEEee-ecCCCCceeeeEEEeC
Q psy2081 322 QNPSSDTNSEKRSTFNAKDILESLGDFEFGETFVYCVHLSQRH-THDMDGYFKPSAVISL 380 (380)
Q Consensus 322 ~~~~~~~~~~~r~~fda~~il~~~~~~~fG~~~v~~I~L~~s~-~~~~~g~Y~~~~~i~L 380 (380)
.. ...+..++ .++++.+.++.||.+.|++|+||+|. +.+.+|+|+++++++|
T Consensus 149 ~~------~~~~~~~~-~~~l~~~~~~~~~~~~v~~i~L~~~~~~~~~~g~Y~~~~~~~L 201 (205)
T 2vfk_A 149 LW------KKGVRKIE-PGLYEQFIDHRFGEEILYQIDLCSMLKKKQSNGYYHCESSIVI 201 (205)
T ss_dssp HH------HTTCSSCC-GGGGGGGTTCEEEEEECCEEEEEESSSCCCTTSCCCEEEEEEC
T ss_pred hh------hccccccC-HHHHHHhcCCcCcEEEeCEEEEEEcCCCCCCCCcEEEEEEEec
Confidence 00 00012344 46788899999999999999999988 5567899999999987
No 2
>1vgj_A Hypothetical protein PH0099; alpha+beta, LIGT-like, structural genomics, ligase; 1.94A {Pyrococcus horikoshii} PDB: 1vdx_A 2fyh_A
Probab=99.97 E-value=9e-30 Score=228.17 Aligned_cols=182 Identities=16% Similarity=0.298 Sum_probs=156.7
Q ss_pred cceeeeccCCChhHHHHHHHHHHHHhcccCcCCCCccccccCCCCceeeEEeeccCCchhHHHHHHHHHhhccccccccc
Q psy2081 165 YTHLLSIPMNVPNIQENFAKFKATVLSDFSRCRGIEESLFQEPGRLHITMGMLMLADSVERDQAVEVLQKCGNNIILPIL 244 (380)
Q Consensus 165 ~thFIaIpl~~~~I~~~~~~fq~~v~~~~~~~~gi~~~~fv~p~~LHLTL~~L~l~~~~ev~~A~~~L~~~~~~~i~~~~ 244 (380)
+++||||+++. ++++.+.++++.+.... . ...|++|+++||||.|++.+++++++++.++|.++. .
T Consensus 1 mR~Fial~~p~-~~~~~l~~~~~~l~~~~-----~-~~~~v~~~~lHiTL~flg~~~~~~~~~l~~~l~~~~-------~ 66 (184)
T 1vgj_A 1 MRAFIAIDVNE-SVRDSLVRAQDYIGSKE-----A-KIKFVERENLHITLKFLGEITEEQAEEIKNILKKIA-------E 66 (184)
T ss_dssp CEEEEEEECCH-HHHHHHHHHHHHHCSSS-----E-EEEECCGGGCEEEEEEEESCCHHHHHHHHHHHHHHH-------T
T ss_pred CeEEEEEcCCH-HHHHHHHHHHHHHhhcC-----C-CcEecCccccEEEEEeecCCCHHHHHHHHHHHHHHH-------c
Confidence 47999999994 79999999999986531 1 257999999999999999999999999999998873 1
Q ss_pred ccCceEEEecceecCCCCCCceeEEEEEecCChHHHHHHHHHHHHHHHHCCCccccccCCCceeeEEEeecccccccCCC
Q psy2081 245 RSQRIKINLKGLEIMNDDPAEVDILYAKVVDDSGLVQKLCDDVVQYFISQHLISKAYQKYDTVKMHVTLMNSKYRMRQNP 324 (380)
Q Consensus 245 ~~~pf~l~l~Glg~F~ddp~~~rVLya~v~d~~~~Lq~L~~~l~~~f~~~Gl~~~~~~e~r~fkpHiTL~nt~~r~~~~~ 324 (380)
...||.|++.|+|+|+ ++++|+|||++++++ +.|++|++.|.+.+...|+.. +. +|+||+||+|.+...
T Consensus 67 ~~~pf~l~l~g~g~F~-~~~~p~vl~~~v~~~-~~L~~L~~~l~~~l~~~g~~~----~~-~f~PHiTLar~~~~~---- 135 (184)
T 1vgj_A 67 KYKKHEVKVKGIGVFP-NPNYIRVIWAGIEND-EIIREMAREIEDELAKLGFKK----EG-NFVAHITLGRVKFVK---- 135 (184)
T ss_dssp TSBCEEEEEEEEEEEE-CSSSEEEEEEEEETC-HHHHHHHHHHHHHHHTTTCCC----CC-CCCCEEEEEEEEEES----
T ss_pred cCCCeEEEEeeEeeCC-CCCCCcEEEEEecCC-HHHHHHHHHHHHHHHHcCCCC----CC-CccceEEEEeecccC----
Confidence 3589999999999999 788999999999954 899999999999999999986 55 999999999753211
Q ss_pred CCCCCccccCcCCHHHHHHHhCCceeceEEeeEEEEEEeeecCCCCceeeeEEEeC
Q psy2081 325 SSDTNSEKRSTFNAKDILESLGDFEFGETFVYCVHLSQRHTHDMDGYFKPSAVISL 380 (380)
Q Consensus 325 ~~~~~~~~r~~fda~~il~~~~~~~fG~~~v~~I~L~~s~~~~~~g~Y~~~~~i~L 380 (380)
. .-++.+.++.+.++.++.+.|++|+|++|.+++.|+.|+++++++|
T Consensus 136 -------~--~~~~~~~~~~~~~~~~~~~~v~~~~L~~s~~~~~g~~y~~l~~~~L 182 (184)
T 1vgj_A 136 -------D--KLGLTMKLKELANEDFGSFVVDAIELKKSTLTPKGPIYETLARFEL 182 (184)
T ss_dssp -------C--HHHHHHHHHHTTTCEEEEEEECEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred -------c--HHHHHHHHHHhcCCCCCcEEEeEEEEEEeeecCCCCceeEEEEEeC
Confidence 0 0135577888889999999999999999999988999999999987
No 3
>1iuh_A 2'-5' RNA ligase; riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: d.61.1.2
Probab=99.93 E-value=1.3e-25 Score=204.53 Aligned_cols=173 Identities=13% Similarity=0.086 Sum_probs=143.8
Q ss_pred cceeeeccCCChhHHHHHHHHHHHHhcccCcCCCCccccccCCCCceeeEEeeccCCchhHHHHHHHHHhhccccccccc
Q psy2081 165 YTHLLSIPMNVPNIQENFAKFKATVLSDFSRCRGIEESLFQEPGRLHITMGMLMLADSVERDQAVEVLQKCGNNIILPIL 244 (380)
Q Consensus 165 ~thFIaIpl~~~~I~~~~~~fq~~v~~~~~~~~gi~~~~fv~p~~LHLTL~~L~l~~~~ev~~A~~~L~~~~~~~i~~~~ 244 (380)
+++||||+++ +++.+.+.++++.+.... ...|++++++||||.|++.+++++++++.++|.++. .
T Consensus 1 mRlFial~~p-~~~~~~l~~~~~~l~~~~-------~~r~v~~~~~HiTL~flgev~~~~~~~l~~~l~~~~-------~ 65 (198)
T 1iuh_A 1 MRLFYAVFLP-EEVRAALVEAQTKVRPFR-------GWKPVPPHQLHLTLLFLGERPEEELPDYLALGHRLA-------R 65 (198)
T ss_dssp CEEEEEEECC-HHHHHHHHHHHGGGTTCT-------TEEECCGGGCEEEEEEEEECCGGGHHHHHHHHHHHH-------H
T ss_pred CEEEEEEeCC-HHHHHHHHHHHHHhhhhc-------CCcccCCCCCEEEEEeCCcCCHHHHHHHHHHHHHHh-------c
Confidence 4799999998 479999999998886521 246999999999999999999999999999998873 1
Q ss_pred ccCceEEEecceecCCCCCCceeEEEEEecCChHHHHHHHHHHHHHHHHC-C-----CccccccCCCceeeEEEeecccc
Q psy2081 245 RSQRIKINLKGLEIMNDDPAEVDILYAKVVDDSGLVQKLCDDVVQYFISQ-H-----LISKAYQKYDTVKMHVTLMNSKY 318 (380)
Q Consensus 245 ~~~pf~l~l~Glg~F~ddp~~~rVLya~v~d~~~~Lq~L~~~l~~~f~~~-G-----l~~~~~~e~r~fkpHiTL~nt~~ 318 (380)
...||.|++.|+++|+ ++++|+|||+++ +++.|..|++.|.+.+... | +.. +.++|+|||||++.+.
T Consensus 66 ~~~pf~l~l~g~g~F~-~~~~p~vl~l~v--~~~~L~~L~~~l~~~l~~~~g~~~~~~~~----~~~~f~PHiTLar~~~ 138 (198)
T 1iuh_A 66 LEAPFRARLRGTGYFP-NEGTPRVWFAKA--EAEGFLRLAEGLRAGVEELLGEEAVRIPG----WDKPFKPHITLARRKA 138 (198)
T ss_dssp HSCCEEEEEEEEEEES-SSSSCSEEEEEE--ECHHHHHHHHHHHHHHHHHHGGGGGGSTT----TTSCCCCEEEEEEESS
T ss_pred cCCCeEEEEcceEECC-CCCCCCEEEEEC--CCHHHHHHHHHHHHHHHHhcCCCcccccC----CCCCCCCcEEeEeccC
Confidence 3589999999999999 678899999999 3789999999999999999 9 875 7789999999996432
Q ss_pred cccCCCCCCCCccccCcCCHHHHHHHhCCceeceEEeeEEEEEEeeecCCCCceeeeEEEeC
Q psy2081 319 RMRQNPSSDTNSEKRSTFNAKDILESLGDFEFGETFVYCVHLSQRHTHDMDGYFKPSAVISL 380 (380)
Q Consensus 319 r~~~~~~~~~~~~~r~~fda~~il~~~~~~~fG~~~v~~I~L~~s~~~~~~g~Y~~~~~i~L 380 (380)
.. . .+. ..++ .| .+.|++|+|++|.+++.|+.|+++++++|
T Consensus 139 ~~-----------~--~l~--~~l~-----~~-~~~v~~~~L~~S~l~~~G~~y~~l~~~~L 179 (198)
T 1iuh_A 139 PA-----------P--RVP--PVLF-----GL-EWPVEGFALVRSELKPKGPVYTVLEKFSL 179 (198)
T ss_dssp CC-----------C--CCC--CCCC-----CE-EEEECEEEEEEEEECSSSEEEEEEEEEEC
T ss_pred cc-----------h--hHH--Hhhc-----Cc-eEEecEEEEEEEEeCCCCCeeeEEEEEEC
Confidence 11 0 111 1111 34 78999999999999998999999999987
No 4
>2d4g_A Hypothetical protein BSU11850; beta barrel, alpha helix, structural genomics, unknown function; 2.30A {Bacillus subtilis}
Probab=99.87 E-value=7.6e-22 Score=174.64 Aligned_cols=166 Identities=16% Similarity=0.170 Sum_probs=131.8
Q ss_pred cceeeeccCCChhHHHHHHHHHHHHhcccCcCCCCccccccCCCCceeeEEeeccCCchhHHHHHHHHHhhccccccccc
Q psy2081 165 YTHLLSIPMNVPNIQENFAKFKATVLSDFSRCRGIEESLFQEPGRLHITMGMLMLADSVERDQAVEVLQKCGNNIILPIL 244 (380)
Q Consensus 165 ~thFIaIpl~~~~I~~~~~~fq~~v~~~~~~~~gi~~~~fv~p~~LHLTL~~L~l~~~~ev~~A~~~L~~~~~~~i~~~~ 244 (380)
+++||||+++ +++++.+.++++.+.. ...|++| ||||.|++.+++++++++.++|.++. .
T Consensus 1 mR~Fiai~~~-~~~~~~l~~~~~~~~~---------~~~~v~p---HiTL~f~g~~~~~~~~~l~~~l~~~~-------~ 60 (171)
T 2d4g_A 1 MKYGIVLFPS-KKLQDLANSYRKRYDP---------SYSLIPP---HLTLRASFECAEEKADQLVSHLRNIA-------K 60 (171)
T ss_dssp CEEEEEBCCC-HHHHHHHHHHHHHHCG---------GGGTSCS---CBCCSSCEECCGGGHHHHHHHHHHHH-------H
T ss_pred CeEEEEEeCC-HHHHHHHHHHHHHhCc---------ccCCCCC---eEEeecCCcCChHHHHHHHHHHHHHH-------c
Confidence 4899999999 4799999999998732 1247888 99999999999999999999998873 1
Q ss_pred ccCceEEEecceecCCCCCCceeEEEEEecCChHHHHHHHHHHHHHHHHCCCccccccCCCceeeEEEeecccccccCCC
Q psy2081 245 RSQRIKINLKGLEIMNDDPAEVDILYAKVVDDSGLVQKLCDDVVQYFISQHLISKAYQKYDTVKMHVTLMNSKYRMRQNP 324 (380)
Q Consensus 245 ~~~pf~l~l~Glg~F~ddp~~~rVLya~v~d~~~~Lq~L~~~l~~~f~~~Gl~~~~~~e~r~fkpHiTL~nt~~r~~~~~ 324 (380)
...||.|++.|+|+|+ |+ ..|||+++++ ++.|++|++.|.+.|... . +.++|+||+||++.. .
T Consensus 61 ~~~pf~l~l~~~g~F~--~~-~~vl~l~~~~-~~~L~~L~~~l~~~~~~~---~----~~~~f~PHiTLar~~---~--- 123 (171)
T 2d4g_A 61 ESHPLVLKMTKYSSFA--PV-NNVIYIKAEP-TEELKTLNEKLYTGVLAG---E----QEYNFVPHVTVGQNL---S--- 123 (171)
T ss_dssp TCCCEEEEEEEEEECT--TT-CCCEEEEECC-CHHHHHHHHHTTSGGGCS---C----CCSCCCCEEEEECSC---C---
T ss_pred cCCCEEEEECCcEEeC--CC-CcEEEEEccC-ChHHHHHHHHHHhccccc---c----cCCCCCCeEEeecCC---C---
Confidence 3489999999999998 22 2499999985 689999999998866541 2 668999999999521 0
Q ss_pred CCCCCccccCcCCHHHHHHHhCCcee-ceEEeeEEEEEEeeecCCCCceeeeEEEeC
Q psy2081 325 SSDTNSEKRSTFNAKDILESLGDFEF-GETFVYCVHLSQRHTHDMDGYFKPSAVISL 380 (380)
Q Consensus 325 ~~~~~~~~r~~fda~~il~~~~~~~f-G~~~v~~I~L~~s~~~~~~g~Y~~~~~i~L 380 (380)
. -++.++++.+....| +.+.|++|+|+++ +.|+.|+++++++|
T Consensus 124 ------~----~~~~~~~~~~~~~~~~~~~~v~~i~L~~s---~~g~~y~~l~~~~L 167 (171)
T 2d4g_A 124 ------D----DEHSDVLGQLKMQEVSHEEIVDRFHLLYQ---LENGSWTVYETFLL 167 (171)
T ss_dssp ------H----HHHHHHHHHHTTSCCCEEEEECEEEEEEE---CTTSCEEEEEEEEC
T ss_pred ------H----HHHHHHHHHhcCCCCceeEEECeEEEEEE---CCCCcEEEEEEEec
Confidence 0 124466777544444 5799999999998 56889999999987
No 5
>1jh6_A Cyclic phosphodiesterase; ADP-ribose 1'',2''-cyclic phosphate, RNA processing, 2',3'-C nucleotide phosphodiesterase, hydrolase; 1.80A {Arabidopsis thaliana} SCOP: d.61.1.1 PDB: 1fsi_A 1jh7_A*
Probab=99.78 E-value=1.9e-18 Score=156.22 Aligned_cols=171 Identities=13% Similarity=0.102 Sum_probs=130.5
Q ss_pred CcceeeeccCCChhHHHHHHHHHHHHhcccCcCCCCccccccCCCCceeeEEeeccCCchhHHHHHHHHHhhcccccccc
Q psy2081 164 PYTHLLSIPMNVPNIQENFAKFKATVLSDFSRCRGIEESLFQEPGRLHITMGMLMLADSVERDQAVEVLQKCGNNIILPI 243 (380)
Q Consensus 164 ~~thFIaIpl~~~~I~~~~~~fq~~v~~~~~~~~gi~~~~fv~p~~LHLTL~~L~l~~~~ev~~A~~~L~~~~~~~i~~~ 243 (380)
..+.|+++| + +++++.+.++++.+.... +.++.++|||| +|..+.+ ++++.+.|.++.
T Consensus 7 ~~~~f~~~p-p-~~~~~~l~~~~~~l~~~~----------~~~~~~~HiTL--lG~~~~~-~~~l~~~L~~~a------- 64 (189)
T 1jh6_A 7 DVYSVWALP-D-EESEPRFKKLMEALRSEF----------TGPRFVPHVTV--AVSAYLT-ADEAKKMFESAC------- 64 (189)
T ss_dssp EEEEEEEEE-C-TTTHHHHHHHHHHHHHHH----------TCCCCCCCEEE--EEEEEEC-HHHHHHHHHHHH-------
T ss_pred CcEEEEEEC-C-HHHHHHHHHHHHHHHHHc----------CCCCCCCEEEE--eCCCCCC-HHHHHHHHHHHH-------
Confidence 457899999 6 479999999999986532 34778999999 8887665 888888888773
Q ss_pred cccCceEEEecceecCCCCCCceeEEEEEecCChHHHHHHHHHHHHHHHHCCCccccccCCCceeeEEEeecccccccCC
Q psy2081 244 LRSQRIKINLKGLEIMNDDPAEVDILYAKVVDDSGLVQKLCDDVVQYFISQHLISKAYQKYDTVKMHVTLMNSKYRMRQN 323 (380)
Q Consensus 244 ~~~~pf~l~l~Glg~F~ddp~~~rVLya~v~d~~~~Lq~L~~~l~~~f~~~Gl~~~~~~e~r~fkpHiTL~nt~~r~~~~ 323 (380)
...+||.|++.|+|+|. ..+||||++|+ .++.|.+|++.+.+. .|+.. + ++|.||+||++.+....
T Consensus 65 ~~~~pf~l~l~g~g~~~---~~~rvlw~~v~-~~~~L~~L~~~v~~~---~g~~~----~-~~f~PHlTLar~~~~~~-- 130 (189)
T 1jh6_A 65 DGLKAYTATVDRVSTGT---FFFQCVFLLLQ-TTPEVMEAGEHCKNH---FNCST----T-TPYMPHLSLLYAELTEE-- 130 (189)
T ss_dssp HTCBCEEEEEEEEEEEE---ETTEEEEEEEC-CCHHHHHHHHHHHHH---TTCCC----C-SCCCCEEEEECCCCCHH--
T ss_pred hhCCCeEEEEcceeccC---ccceEEEEeec-CCHHHHHHHHHHHHH---hCCCC----C-CCCCCeEEEEEecCCHH--
Confidence 13589999999999953 35799999998 458899999999886 68764 3 79999999995321110
Q ss_pred CCCCCCccccCcCCHHHHHHHh-CCceeceEEeeEEEEEEeeecC-CCCceeeeEEEeC
Q psy2081 324 PSSDTNSEKRSTFNAKDILESL-GDFEFGETFVYCVHLSQRHTHD-MDGYFKPSAVISL 380 (380)
Q Consensus 324 ~~~~~~~~~r~~fda~~il~~~-~~~~fG~~~v~~I~L~~s~~~~-~~g~Y~~~~~i~L 380 (380)
..-++.+.++.+ .++.++.|.|++|+|++|..++ .-.-+..+++++|
T Consensus 131 ----------~~~~~~~~l~~~~~~~~~~~~~v~~~~L~~s~~~~~~~~~w~l~~~~~~ 179 (189)
T 1jh6_A 131 ----------EKKNAQEKAYTLDSSLDGLSFRLNRLALCKTDTEDKTLETWETVAVCNL 179 (189)
T ss_dssp ----------HHHHHHHHHHHHCTTCTTCEEEEEEEEEEECCTTCTTCTTCEEEEEEEC
T ss_pred ----------HHHHHHHHHHhhccCCCCCcEEeeEEEEEEeCCCCCccCeEEEEEEEEc
Confidence 001244556555 5678889999999999998864 4567888888876
No 6
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.58 E-value=2.4e-15 Score=121.27 Aligned_cols=81 Identities=28% Similarity=0.411 Sum_probs=72.0
Q ss_pred ceeeccCCceEEEEEcCCCCcceeeCCCCchHHHHHHHhCceEEcCCCCC-CCcEEEeeCCHHHHHHHHHHHHHHhhhhc
Q psy2081 82 DIYLGKDGQYKYQCHIPKSFYPFIIGVKGSTKRRIESETNTQLSIPRQGQ-TGDIIISSYSERGIASAKRRLDLLLVFAR 160 (380)
Q Consensus 82 ~i~~~~~g~~~~~v~Vp~~~~~~IIG~~G~t~k~ie~eT~~~I~ip~~~~-~~~i~I~g~~~~~v~~A~~~I~~iv~~~r 160 (380)
+|.....++++..+.||+++|++|||++|+++|+|+++|||+|+||++++ ++.|+|+|. +++|++|+.+|+.++.+..
T Consensus 8 ~iv~~l~~~~t~~i~Ip~~~ig~IIG~gG~~Ik~I~~etg~~I~i~~~~~~~~~V~I~G~-~e~v~~A~~~I~~i~~~~~ 86 (94)
T 2cte_A 8 DIVARLQTQASATVAIPKEHHRFVIGKNGEKLQDLELKTATKIQIPRPDDPSNQIKITGT-KEGIEKARHEVLLISAEQD 86 (94)
T ss_dssp CCCCCCCSCEEEEEECCTTTHHHHHCSSSCHHHHHHHHTTCCCBCCCTTSSCCEEEEEEC-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCceEEEEEEChHHeeeeECCCChhHHHHHHHHCCEEEeCCCCCCCCeEEEEEC-HHHHHHHHHHHHHHhhccc
Confidence 44555566799999999999999999999999999999999999998654 479999997 9999999999999998887
Q ss_pred ccC
Q psy2081 161 KKI 163 (380)
Q Consensus 161 kk~ 163 (380)
+..
T Consensus 87 ~~~ 89 (94)
T 2cte_A 87 KRS 89 (94)
T ss_dssp TCC
T ss_pred ccc
Confidence 654
No 7
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=9.6e-15 Score=115.14 Aligned_cols=71 Identities=20% Similarity=0.404 Sum_probs=64.7
Q ss_pred cCCceEEEEEcCCCCcceeeCCCCchHHHHHHHhCceEEcCCCCCCCcEEEeeCCHHHHHHHHHHHHHHhhh
Q psy2081 87 KDGQYKYQCHIPKSFYPFIIGVKGSTKRRIESETNTQLSIPRQGQTGDIIISSYSERGIASAKRRLDLLLVF 158 (380)
Q Consensus 87 ~~g~~~~~v~Vp~~~~~~IIG~~G~t~k~ie~eT~~~I~ip~~~~~~~i~I~g~~~~~v~~A~~~I~~iv~~ 158 (380)
..++.+..|.||.+++++||||+|+|||+|+++|||+|+||+++++..|+|+|. +++|++|+++|+.++..
T Consensus 6 ~~~~~~~~i~VP~~~vG~IIGkgG~tIk~Iqe~Tga~I~I~~~~~~~~v~ItG~-~e~v~~A~~~I~~~i~~ 76 (83)
T 2dgr_A 6 SGGQTTIQVRVPYRVVGLVVGPKGATIKRIQQRTHTYIVTPGRDKEPVFAVTGM-PENVDRAREEIEAHITL 76 (83)
T ss_dssp SCCSEEEEEECCHHHHHHHHTTTTSSHHHHHHHTTCEEECCCSSSCCEEEEEEC-TTTHHHHHHHHHHHHHS
T ss_pred CCCceEEEEEeChHHeeeeECCCchHHHHHHHHhCCeEEecCCCCCCeEEEEcC-HHHHHHHHHHHHHHHhc
Confidence 456789999999999999999999999999999999999998777778999995 79999999999997654
No 8
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.47 E-value=8.3e-14 Score=112.95 Aligned_cols=70 Identities=21% Similarity=0.402 Sum_probs=64.1
Q ss_pred ceEEEEEcCCCCcceeeCCCCchHHHHHHHhCceEEcCCCCCC----CcEEEeeCCHHHHHHHHHHHHHHhhhhc
Q psy2081 90 QYKYQCHIPKSFYPFIIGVKGSTKRRIESETNTQLSIPRQGQT----GDIIISSYSERGIASAKRRLDLLLVFAR 160 (380)
Q Consensus 90 ~~~~~v~Vp~~~~~~IIG~~G~t~k~ie~eT~~~I~ip~~~~~----~~i~I~g~~~~~v~~A~~~I~~iv~~~r 160 (380)
.|+.+|.||+++|+.|||++|++|++|+++|||+|+||+.++. ..|+|+|+ ++++.+|+.+|+.++.+..
T Consensus 16 ~~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~etg~~I~i~~~g~~~~~~~~V~I~G~-~e~v~~A~~~I~~iv~e~e 89 (97)
T 2ctl_A 16 SFKLSVTVDPKYHPKIIGRKGAVITQIRLEHDVNIQFPDKDDGNQPQDQITITGY-EKNTEAARDAILRIVGELE 89 (97)
T ss_dssp TCEEEEECCTTTHHHHSCSSSCHHHHHHHHHTCEEECCCTTTCSSCSSEEEEESC-HHHHHHHHHHHHHHHHHHH
T ss_pred ceeEEEEECHHHhhhcCCCCchhHHHHHHHHCCEEEecCCCCCCCCccEEEEEeC-HHHHHHHHHHHHHHHHHHH
Confidence 3899999999999999999999999999999999999986642 48999997 9999999999999997764
No 9
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.46 E-value=8.1e-14 Score=112.59 Aligned_cols=78 Identities=15% Similarity=0.174 Sum_probs=68.0
Q ss_pred ceeeccCCceEEEEEcCCCCcceeeCCCCchHHHHHHHhCceEEcCCCCCC--CcEEEeeCCHHHHHHHHHHHHHHhhhh
Q psy2081 82 DIYLGKDGQYKYQCHIPKSFYPFIIGVKGSTKRRIESETNTQLSIPRQGQT--GDIIISSYSERGIASAKRRLDLLLVFA 159 (380)
Q Consensus 82 ~i~~~~~g~~~~~v~Vp~~~~~~IIG~~G~t~k~ie~eT~~~I~ip~~~~~--~~i~I~g~~~~~v~~A~~~I~~iv~~~ 159 (380)
.|......+++.++.||+++|+.|||++|+++|+|+++|+|+|+||..++. ..|+|+|. .++|++|+++|+.|+.+.
T Consensus 8 ~iv~~l~~~vt~~i~Ip~~~ig~IIG~gG~~Ir~I~e~tg~~I~i~~~g~~~~~~V~I~G~-~e~v~~A~~~I~~i~~e~ 86 (95)
T 2ctm_A 8 RIVGELEQMVSEDVPLDHRVHARIIGARGKAIRKIMDEFKVDIRFPQSGAPDPNCVTVTGL-PENVEEAIDHILNLEEEY 86 (95)
T ss_dssp CCCCCTTTCCCEEEECCTTTHHHHHCSSSCHHHHHHHHHTCEEECCCTTCSCTTEEEEESC-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhcccEEEEEEECHHHccccCCCCcchHHHHHHHHCCeEEecCCCCCCCcEEEEEcC-HHHHHHHHHHHHHHHHHH
Confidence 344445567899999999999999999999999999999999999986642 36999997 799999999999999876
Q ss_pred c
Q psy2081 160 R 160 (380)
Q Consensus 160 r 160 (380)
.
T Consensus 87 ~ 87 (95)
T 2ctm_A 87 L 87 (95)
T ss_dssp H
T ss_pred H
Confidence 4
No 10
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=99.44 E-value=9.8e-14 Score=106.08 Aligned_cols=65 Identities=26% Similarity=0.358 Sum_probs=59.1
Q ss_pred eEEEEEcCCCCcceeeCCCCchHHHHHHHhCceEEcCCCCCC-CcEEEeeCCHHHHHHHHHHHHHHh
Q psy2081 91 YKYQCHIPKSFYPFIIGVKGSTKRRIESETNTQLSIPRQGQT-GDIIISSYSERGIASAKRRLDLLL 156 (380)
Q Consensus 91 ~~~~v~Vp~~~~~~IIG~~G~t~k~ie~eT~~~I~ip~~~~~-~~i~I~g~~~~~v~~A~~~I~~iv 156 (380)
.+.++.||+++|+.|||++|+++++|+++|||+|+||+.+++ ..|+|+|+ .++|++|+++|+.|+
T Consensus 5 ~~~~i~I~~~~ig~iIG~gG~~I~~I~e~tg~~I~i~~~g~~~~~V~I~G~-~~~v~~A~~~I~~i~ 70 (71)
T 1vig_A 5 DYVEINIDHKFHRHLIGKSGANINRIKDQYKVSVRIPPDSEKSNLIRIEGD-PQGVQQAKRELLELA 70 (71)
T ss_dssp EEEEEEECSSHHHHHTCSSCCHHHHHHHHTCCEEECCCCCSSSEEEEEEES-SHHHHHHHHHHHHTC
T ss_pred EEEEEEECHHHhhhhcCCCCccHHHHHHHHCCEEEECCCCCcccEEEEEcC-HHHHHHHHHHHHHHh
Confidence 578999999999999999999999999999999999986543 38999998 689999999999875
No 11
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.43 E-value=6.8e-14 Score=112.99 Aligned_cols=77 Identities=23% Similarity=0.302 Sum_probs=66.9
Q ss_pred eeeccCCceEEEEEcCCCCcceeeCCCCchHHHHHHHh-CceEEcCCCCCC-CcEEEeeCCHHHHHHHHHHHHHHhhhhc
Q psy2081 83 IYLGKDGQYKYQCHIPKSFYPFIIGVKGSTKRRIESET-NTQLSIPRQGQT-GDIIISSYSERGIASAKRRLDLLLVFAR 160 (380)
Q Consensus 83 i~~~~~g~~~~~v~Vp~~~~~~IIG~~G~t~k~ie~eT-~~~I~ip~~~~~-~~i~I~g~~~~~v~~A~~~I~~iv~~~r 160 (380)
|........+.+|.||+++|+.|||++|+++|+|+++| ||+|+||+.+.. +.|+|+|++ ++|++|+++|+.|+++..
T Consensus 9 i~~e~~~~vt~~i~Ip~~~i~~iIG~gGk~Ir~I~eetggv~I~i~~~g~~~~~V~I~G~~-~~v~~A~~~I~~iv~e~e 87 (95)
T 2ctj_A 9 IQKDLANIAEVEVSIPAKLHNSLIGTKGRLIRSIMEECGGVHIHFPVEGSGSDTVVIRGPS-SDVEKAKKQLLHLAEEKQ 87 (95)
T ss_dssp CCCCCCSSCCEEEECCHHHHHHHHCSSSHHHHHHHHHHTSCEEECCCTTTTCCEEEEESCH-HHHHHHHHHHHHHHHHHS
T ss_pred HHHHHhhcEEEEEEECHHHHhhhCCCCchhHHHHHHHcCCCEEEeCCCCCCcceEEEEcCH-HHHHHHHHHHHHHHhhhh
Confidence 33444455789999999999999999999999999999 999999986644 489999974 599999999999998875
No 12
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.42 E-value=2.7e-13 Score=110.94 Aligned_cols=79 Identities=14% Similarity=0.256 Sum_probs=69.0
Q ss_pred ceeeccCCceEEEEEcCCCCcceeeCCCCchHHHHHHH-hCceEEcCCCCCCCcEEEeeCCHHHHHHHHHHHHHHhhhhc
Q psy2081 82 DIYLGKDGQYKYQCHIPKSFYPFIIGVKGSTKRRIESE-TNTQLSIPRQGQTGDIIISSYSERGIASAKRRLDLLLVFAR 160 (380)
Q Consensus 82 ~i~~~~~g~~~~~v~Vp~~~~~~IIG~~G~t~k~ie~e-T~~~I~ip~~~~~~~i~I~g~~~~~v~~A~~~I~~iv~~~r 160 (380)
.|....+...+.+|.||+.+|++|||++|+++|+|+++ ++++|+||+ .++.|+|+|+ ++.|++|+.+|+.+++++.
T Consensus 18 ~i~~~~~~~~t~~i~vp~~~h~~IIG~~G~~Ik~i~~~~~~v~I~fp~--~~~~ItI~G~-~~~V~~a~~~I~~~v~el~ 94 (102)
T 2ctf_A 18 EVYAKANSFTVSSVAAPSWLHRFIIGKKGQNLAKITQQMPKVHIEFTE--GEDKITLEGP-TEDVSVAQEQIEGMVKDLI 94 (102)
T ss_dssp CCCCCCCCCEEEEEECCSTTHHHHHTTTTCHHHHHHHHCSSSEEEECS--SSCEEEEEEC-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCeEEEEEEeCHHHHhhhcCCCCccHHHHHHHcCCcEEEeCC--CCCEEEEECC-HHHHHHHHHHHHHHHHHHH
Confidence 34444455578999999999999999999999999997 699999998 4578999997 9999999999999999887
Q ss_pred ccC
Q psy2081 161 KKI 163 (380)
Q Consensus 161 kk~ 163 (380)
.+.
T Consensus 95 ~~~ 97 (102)
T 2ctf_A 95 NRS 97 (102)
T ss_dssp HHS
T ss_pred hhc
Confidence 554
No 13
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.39 E-value=3e-13 Score=111.03 Aligned_cols=69 Identities=20% Similarity=0.281 Sum_probs=63.3
Q ss_pred eEEEEEcCCCCcceeeCCCCchHHHHHHHhCceEEcCCCCCC-CcEEEeeCCHHHHHHHHHHHHHHhhhhc
Q psy2081 91 YKYQCHIPKSFYPFIIGVKGSTKRRIESETNTQLSIPRQGQT-GDIIISSYSERGIASAKRRLDLLLVFAR 160 (380)
Q Consensus 91 ~~~~v~Vp~~~~~~IIG~~G~t~k~ie~eT~~~I~ip~~~~~-~~i~I~g~~~~~v~~A~~~I~~iv~~~r 160 (380)
.+.++.||+++|+.|||+||++||+|+++|||+|+||..+.. +.|+|+|. .++|++|+.+|+.++.+..
T Consensus 17 ~~~~i~Ip~~~ig~IIG~gG~~Ir~I~eetg~~I~I~~~g~~~~~V~I~G~-~e~v~~A~~~I~~i~~e~e 86 (104)
T 2ctk_A 17 VTIEVEVPFDLHRYVIGQKGSGIRKMMDEFEVNIHVPAPELQSDIIAITGL-AANLDRAKAGLLERVKELQ 86 (104)
T ss_dssp EEEEEECCHHHHHHHHCSSSHHHHHHHHHTCCEEECCCTTTTCCEEEEEEC-HHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEChHHccceeCCCchHHHHHHHHHCCEEEecCCCCCcceEEEEcC-HHHHHHHHHHHHHHHhhHH
Confidence 789999999999999999999999999999999999986643 48999997 6999999999999997763
No 14
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=99.34 E-value=5.1e-12 Score=124.85 Aligned_cols=71 Identities=15% Similarity=0.243 Sum_probs=63.5
Q ss_pred eccCCceEEEEEcCCCCcceeeCCCC--chHHHHHHHhCceEEcCCCC--------CCCcEEEeeCCHHHHHHHHHHHHH
Q psy2081 85 LGKDGQYKYQCHIPKSFYPFIIGVKG--STKRRIESETNTQLSIPRQG--------QTGDIIISSYSERGIASAKRRLDL 154 (380)
Q Consensus 85 ~~~~g~~~~~v~Vp~~~~~~IIG~~G--~t~k~ie~eT~~~I~ip~~~--------~~~~i~I~g~~~~~v~~A~~~I~~ 154 (380)
.+...+++.++.||+.+|++|||++| ++|++|.+||||+|+||..+ .++.|+|+|. +++|++||.+|+.
T Consensus 24 e~~~~~VTl~v~Ip~~~Hs~IIGkgG~~sNIkkImeEtgv~I~fPD~~~~~~~~~~ks~~VtItG~-~enVE~AR~~I~~ 102 (376)
T 3n89_A 24 EINPTRVTLNMEFESQYYSLMTSDNGDHENVASIMAETNTLIQLPDRSVGGTTPDPFAQQVTITGY-FGDVDRARMLMRR 102 (376)
T ss_dssp CCCTTEEEEEEECCGGGHHHHHSCCSSSCSHHHHHHHHTCEEECCCCCCCSSSCCTTTTEEEEEEE-HHHHHHHHHHHHH
T ss_pred EecCCEEEEEEEEchhhhhhhccCCChHHHHHHHHHHhCCeEECCCCcccccCCcCCCCeEEEEcC-HHHHHHHHHHHHh
Confidence 34566799999999999999999999 99999999999999999865 1257999996 9999999999998
Q ss_pred Hh
Q psy2081 155 LL 156 (380)
Q Consensus 155 iv 156 (380)
++
T Consensus 103 l~ 104 (376)
T 3n89_A 103 NC 104 (376)
T ss_dssp SC
T ss_pred cC
Confidence 65
No 15
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=99.30 E-value=4.3e-12 Score=99.51 Aligned_cols=72 Identities=22% Similarity=0.216 Sum_probs=63.5
Q ss_pred CCceEEEEEcCCCCcceeeCCCCchHHHHHHHhCceEEcCCCC--C-CCcEEEeeCCHHHHHHHHHHHHHHhhhhc
Q psy2081 88 DGQYKYQCHIPKSFYPFIIGVKGSTKRRIESETNTQLSIPRQG--Q-TGDIIISSYSERGIASAKRRLDLLLVFAR 160 (380)
Q Consensus 88 ~g~~~~~v~Vp~~~~~~IIG~~G~t~k~ie~eT~~~I~ip~~~--~-~~~i~I~g~~~~~v~~A~~~I~~iv~~~r 160 (380)
..+++..+.||.++++.|||++|+++|+|+++|||+|+|+... . +..|+|+| ++++|.+|+..|+.++.+..
T Consensus 4 g~~~~~~i~Vp~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~v~I~G-~~~~v~~A~~~I~~~i~~~~ 78 (82)
T 1zzk_A 4 GPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITG-TQDQIQNAQYLLQNSVKQYS 78 (82)
T ss_dssp CCCEEEEEEEETTTGGGGTCGGGHHHHHHHHHHCCEEEECCTTSCSSEEEEEEEE-CHHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEEEEChHhcCeeECCCchHHHHHHHHHCCEEEEcCCCCCCCceEEEEEe-CHHHHHHHHHHHHHHHHhcc
Confidence 3468999999999999999999999999999999999998742 1 25799999 59999999999999997763
No 16
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=99.30 E-value=3.9e-12 Score=100.45 Aligned_cols=67 Identities=15% Similarity=0.182 Sum_probs=59.5
Q ss_pred eEEEEEcCCCCcceeeCCCCchHHHHHHHhCceEEcCCCCCC-----CcEEEeeCCHHHHHHHHHHHHHHhhh
Q psy2081 91 YKYQCHIPKSFYPFIIGVKGSTKRRIESETNTQLSIPRQGQT-----GDIIISSYSERGIASAKRRLDLLLVF 158 (380)
Q Consensus 91 ~~~~v~Vp~~~~~~IIG~~G~t~k~ie~eT~~~I~ip~~~~~-----~~i~I~g~~~~~v~~A~~~I~~iv~~ 158 (380)
....+.||+++++.|||++|+|+|+|+++|||+|+|++.+.. ..|+|+| +++++.+|+..|+.++.+
T Consensus 14 ~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~er~v~I~G-~~~~v~~A~~~I~~i~~e 85 (85)
T 2opv_A 14 TVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIG-DPYKVQQACEMVMDILRE 85 (85)
T ss_dssp EEEEEEECTTTHHHHHTTTTHHHHHHHHHHTCEEEECSSSCSSTTSCEEEEEEE-CHHHHHHHHHHHHHHHTC
T ss_pred EEEEEEeChhheeeeECCCCHHHHHHHHHHCCEEEEcCCCCCCCCCceEEEEEe-CHHHHHHHHHHHHHHhcC
Confidence 578999999999999999999999999999999999874431 1399999 799999999999999753
No 17
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=99.28 E-value=3.6e-12 Score=98.30 Aligned_cols=67 Identities=15% Similarity=0.275 Sum_probs=59.4
Q ss_pred eEEEEEcCCCCcceeeCCCCchHHHHHHHhCceEEcCCCCC------CCcEEEeeCCHHHHHHHHHHHHHHhhh
Q psy2081 91 YKYQCHIPKSFYPFIIGVKGSTKRRIESETNTQLSIPRQGQ------TGDIIISSYSERGIASAKRRLDLLLVF 158 (380)
Q Consensus 91 ~~~~v~Vp~~~~~~IIG~~G~t~k~ie~eT~~~I~ip~~~~------~~~i~I~g~~~~~v~~A~~~I~~iv~~ 158 (380)
.+..+.||.+++|.|||++|+++++|+++|||+|+|++.++ +..|+|+|. +++|.+|+..|+.++.+
T Consensus 3 ~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~~~~v~I~G~-~~~v~~A~~~I~~~i~e 75 (76)
T 1dtj_A 3 ELVEMAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGS-PAATQAAQYLISQRVTY 75 (76)
T ss_dssp EEEEEEEETTTHHHHHCSTTHHHHHHHHHHCCEEEECCTTCCSTTCCEEEEEEEES-HHHHHHHHHHHHHHCC-
T ss_pred eEEEEEEChHHcceEECCCchHHHHHHHHhCCEEEECcCCCCCCCCceeEEEEEeC-HHHHHHHHHHHHHHHhc
Confidence 57899999999999999999999999999999999997432 258999996 99999999999998753
No 18
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.25 E-value=3.1e-12 Score=102.95 Aligned_cols=70 Identities=19% Similarity=0.258 Sum_probs=63.0
Q ss_pred CceEEEEEcCCCCcceeeCCCCchHHHHHHHhCceEEcCCCCC-----CCcEEEeeCCHHHHHHHHHHHHHHhhhh
Q psy2081 89 GQYKYQCHIPKSFYPFIIGVKGSTKRRIESETNTQLSIPRQGQ-----TGDIIISSYSERGIASAKRRLDLLLVFA 159 (380)
Q Consensus 89 g~~~~~v~Vp~~~~~~IIG~~G~t~k~ie~eT~~~I~ip~~~~-----~~~i~I~g~~~~~v~~A~~~I~~iv~~~ 159 (380)
++++..|.||.++++.||||+|++||+|+++|+|+|+|++.+. +..|+|+| ++++|..|+..|+.++.+.
T Consensus 13 ~~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~r~v~I~G-~~~~v~~A~~~I~~~i~~~ 87 (94)
T 1x4m_A 13 GNAVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRITG-DPYKVQQAKEMVLELIRDQ 87 (94)
T ss_dssp CCEEEEEEECHHHHHHHSCSSSSHHHHHHHHHTSEEEECCSCCCSSCSCEEEEEEE-CTTTHHHHHHHHHHHHCCC
T ss_pred CcEEEEEEEChhhcceEECCCCHHHHHHHHHHCCeEEecCCCCCCCCCceEEEEEe-CHHHHHHHHHHHHHHHhcc
Confidence 5689999999999999999999999999999999999987543 24599999 6899999999999999765
No 19
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=99.23 E-value=7.4e-12 Score=98.11 Aligned_cols=71 Identities=20% Similarity=0.262 Sum_probs=61.6
Q ss_pred CCceEEEEEcCCCCcceeeCCCCchHHHHHHHhCceEEcCCCCC---CCcEEEeeCCHHHHHHHHHHHHHHhhhh
Q psy2081 88 DGQYKYQCHIPKSFYPFIIGVKGSTKRRIESETNTQLSIPRQGQ---TGDIIISSYSERGIASAKRRLDLLLVFA 159 (380)
Q Consensus 88 ~g~~~~~v~Vp~~~~~~IIG~~G~t~k~ie~eT~~~I~ip~~~~---~~~i~I~g~~~~~v~~A~~~I~~iv~~~ 159 (380)
+.+.+..+.||.++++.|||++|+++++|+++|||+|+|++... +..|+|+|. .++|.+|+..|+.++.+.
T Consensus 3 g~~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~sga~I~i~~~~~~~~~r~v~I~G~-~~~v~~A~~~I~~~i~~~ 76 (82)
T 1wvn_A 3 GSQTTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGS-AASISLAQYLINARLSSE 76 (82)
T ss_dssp TTCEEEEEEEEGGGHHHHHCGGGHHHHHHHHHHCCEEEECCCCTTCSEEEEEEEEC-HHHHHHHHHHHHHHTC--
T ss_pred CCcEEEEEEEchHhccceeCCCchhHHHHHHHhCCEEEEecCCCCCCceEEEEEcC-HHHHHHHHHHHHHHHHhh
Confidence 35688999999999999999999999999999999999987322 357999995 799999999999998765
No 20
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=99.23 E-value=6.1e-12 Score=96.54 Aligned_cols=70 Identities=16% Similarity=0.107 Sum_probs=62.0
Q ss_pred CCceEEEEEcCCCCcceeeCCCCchHHHHHHHhCceEEcCCCCCC-CcEEEeeCCHHHHHHHHHHHHHHhhh
Q psy2081 88 DGQYKYQCHIPKSFYPFIIGVKGSTKRRIESETNTQLSIPRQGQT-GDIIISSYSERGIASAKRRLDLLLVF 158 (380)
Q Consensus 88 ~g~~~~~v~Vp~~~~~~IIG~~G~t~k~ie~eT~~~I~ip~~~~~-~~i~I~g~~~~~v~~A~~~I~~iv~~ 158 (380)
+......+.||.+.+|.|||++|+++|+|+++|||+|+|++.+.. ..|+|+|. +++|.+|+.+|..++.+
T Consensus 2 ~~~~~~~i~ip~~~ig~iIGkgG~~Ik~I~~~tga~I~i~~~~~~er~v~I~G~-~~~v~~A~~~I~~~l~e 72 (73)
T 2axy_A 2 NVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGP-TNAIFKAFAMIIDKLEE 72 (73)
T ss_dssp CCCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECSSCCSEEEEEEEEC-HHHHHHHHHHHHHHHHC
T ss_pred CceEEEEEEEChhHeeeEECCCCHHHHHHHHHHCCEEEEecCCCCcEEEEEEeC-HHHHHHHHHHHHHHHhc
Confidence 446789999999999999999999999999999999999875432 36999997 99999999999988754
No 21
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=99.22 E-value=9.3e-12 Score=99.76 Aligned_cols=72 Identities=24% Similarity=0.391 Sum_probs=64.2
Q ss_pred CceEEEEEcCCCCcceeeCCCCchHHHHHHHhCceEEcCCCCC---CCcEEEeeCCHHHHHHHHHHHHHHhhhhcc
Q psy2081 89 GQYKYQCHIPKSFYPFIIGVKGSTKRRIESETNTQLSIPRQGQ---TGDIIISSYSERGIASAKRRLDLLLVFARK 161 (380)
Q Consensus 89 g~~~~~v~Vp~~~~~~IIG~~G~t~k~ie~eT~~~I~ip~~~~---~~~i~I~g~~~~~v~~A~~~I~~iv~~~rk 161 (380)
...+..|.||.++++.|||++|++||+|+++|+|+|+|++... +..|+|+|. .++|.+|+..|+.++.+.+.
T Consensus 13 ~~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~g~~~r~v~I~G~-~e~v~~A~~~I~~~i~~~~~ 87 (92)
T 1x4n_A 13 SVMTEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGT-PESVQSAKRLLDQIVEKGRS 87 (92)
T ss_dssp CCEEEEEEEEHHHHHHHHCSSSHHHHHHHHHSCCEEEECSCCTTCSEEEEEEEEC-HHHHHHHHHHHHHHHHHTTC
T ss_pred CCEEEEEEEChHHcceeECCCchHHHHHHHHhCCEEEEcCCCCCCCccEEEEEeC-HHHHHHHHHHHHHHHHhccc
Confidence 3478999999999999999999999999999999999987532 247999996 99999999999999988764
No 22
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.21 E-value=1.4e-11 Score=100.88 Aligned_cols=70 Identities=21% Similarity=0.197 Sum_probs=61.8
Q ss_pred CceEEEEEcCCCCcceeeCCCCchHHHHHHHhCceEEcCCCCC-----CCcEEEeeCCHHHHHHHHHHHHHHhhhh
Q psy2081 89 GQYKYQCHIPKSFYPFIIGVKGSTKRRIESETNTQLSIPRQGQ-----TGDIIISSYSERGIASAKRRLDLLLVFA 159 (380)
Q Consensus 89 g~~~~~v~Vp~~~~~~IIG~~G~t~k~ie~eT~~~I~ip~~~~-----~~~i~I~g~~~~~v~~A~~~I~~iv~~~ 159 (380)
...+..|.||.++++.|||++|++||+|+++|||+|+|++... ++.|+|+|. .++|.+|+..|+.++.+.
T Consensus 13 ap~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~~~V~I~G~-~~~v~~A~~~I~~~i~e~ 87 (104)
T 1we8_A 13 TPVFEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEGTLLLSRLIKISGT-QKEVAAAKHLILEKVSED 87 (104)
T ss_dssp CEEEEEEEEETTTHHHHHTTTSHHHHHHHHHHCCEEEECCSSCCSSSSEEEEEEEEE-HHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEEChhheeeeECCCCHHHHHHHHHHCCEEEEecCCCCCCCCcceEEEEcC-HHHHHHHHHHHHHHHhhC
Confidence 3467899999999999999999999999999999999987542 468999996 668999999999998655
No 23
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=99.20 E-value=8.9e-12 Score=96.21 Aligned_cols=68 Identities=19% Similarity=0.274 Sum_probs=60.9
Q ss_pred ceEEEEEcCCCCcceeeCCCCchHHHHHHHhCceEEcCCCCC---CCcEEEeeCCHHHHHHHHHHHHHHhhh
Q psy2081 90 QYKYQCHIPKSFYPFIIGVKGSTKRRIESETNTQLSIPRQGQ---TGDIIISSYSERGIASAKRRLDLLLVF 158 (380)
Q Consensus 90 ~~~~~v~Vp~~~~~~IIG~~G~t~k~ie~eT~~~I~ip~~~~---~~~i~I~g~~~~~v~~A~~~I~~iv~~ 158 (380)
.++..+.||.+++|.|||++|+++++|+++|||+|+|+++.. ++.|+|+|. +++|.+|+..|+.++.+
T Consensus 4 ~~~~~i~Ip~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~v~I~G~-~~~v~~A~~~I~~~i~~ 74 (76)
T 2p2r_A 4 TTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGS-AASISLAQYLINVRLSS 74 (76)
T ss_dssp CEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCCCTTCSEEEEEEEEC-HHHHHHHHHHHHHHHTT
T ss_pred ceEEEEEEChHHcceEECCCChHHHHHHHHHCCEEEEcCCCCCCCeEEEEEEeC-HHHHHHHHHHHHHHHHc
Confidence 478899999999999999999999999999999999987322 367999996 99999999999998854
No 24
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=99.20 E-value=8.6e-12 Score=99.33 Aligned_cols=70 Identities=23% Similarity=0.207 Sum_probs=62.6
Q ss_pred CceEEEEEcCCCCcceeeCCCCchHHHHHHHhCceEEcCCCC--C-CCcEEEeeCCHHHHHHHHHHHHHHhhhh
Q psy2081 89 GQYKYQCHIPKSFYPFIIGVKGSTKRRIESETNTQLSIPRQG--Q-TGDIIISSYSERGIASAKRRLDLLLVFA 159 (380)
Q Consensus 89 g~~~~~v~Vp~~~~~~IIG~~G~t~k~ie~eT~~~I~ip~~~--~-~~~i~I~g~~~~~v~~A~~~I~~iv~~~ 159 (380)
.+++..+.||.++++.|||++|+++|+|+++|+|+|+|++.. . +..|+|+|. +++|.+|+..|+.++.+.
T Consensus 12 ~~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~v~I~G~-~e~v~~A~~~I~~~i~e~ 84 (89)
T 1j5k_A 12 PIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGT-QDQIQNAQYLLQNSVKQY 84 (89)
T ss_dssp CEEEEEEEEEHHHHHHHHCGGGHHHHHHHHHTCCEEEECSCCSSSSEEEEEEEEE-HHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEEEChhhcceeECCCCHhHHHHHHHhCCeEEecCCCCCCCccEEEEEcC-HHHHHHHHHHHHHHHHhh
Confidence 357889999999999999999999999999999999998642 1 367999996 999999999999999775
No 25
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.20 E-value=1.7e-11 Score=100.88 Aligned_cols=69 Identities=17% Similarity=0.213 Sum_probs=60.9
Q ss_pred eEEEEEcCCCCcceeeCCCCchHHHHHHHhCceEEcCCCCCC---CcEEEeeCCHHHHHHHHHHHHHHhhhhc
Q psy2081 91 YKYQCHIPKSFYPFIIGVKGSTKRRIESETNTQLSIPRQGQT---GDIIISSYSERGIASAKRRLDLLLVFAR 160 (380)
Q Consensus 91 ~~~~v~Vp~~~~~~IIG~~G~t~k~ie~eT~~~I~ip~~~~~---~~i~I~g~~~~~v~~A~~~I~~iv~~~r 160 (380)
-+.+|.||+++++.||||+|+|||+|+++|+|+|+|++.+.. ..|+|+|. +++|++|+..|+.++.+..
T Consensus 11 ~~~~i~Ip~~~iG~IIGkgG~~Ik~I~~~TGakI~I~~~~~~~~er~V~I~G~-~e~v~~A~~~I~~ii~~~~ 82 (106)
T 2hh3_A 11 GGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGPEKIAHIMGP-PDRCEHAARIINDLLQSLR 82 (106)
T ss_dssp -CEEEEEETTTHHHHHTTTTHHHHHHHHHHTCEEEECSSCSSSSEEEEEEESS-HHHHHHHHHHHHHHHHHHC
T ss_pred eEEEEEECHHHcCccCCCCcHHHHHHHHHHCcEEEEecCCCCCceeEEEEEeC-HHHHHHHHHHHHHHHhccc
Confidence 478999999999999999999999999999999999864322 26999996 9999999999999998774
No 26
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.19 E-value=1.5e-11 Score=104.88 Aligned_cols=70 Identities=21% Similarity=0.392 Sum_probs=62.7
Q ss_pred CceEEEEEcCCC------CcceeeCCCCchHHHHHHHhCceEEcCCCC-------------------CCCcEEEeeCCHH
Q psy2081 89 GQYKYQCHIPKS------FYPFIIGVKGSTKRRIESETNTQLSIPRQG-------------------QTGDIIISSYSER 143 (380)
Q Consensus 89 g~~~~~v~Vp~~------~~~~IIG~~G~t~k~ie~eT~~~I~ip~~~-------------------~~~~i~I~g~~~~ 143 (380)
.+++.+|.||.. |+|.|||++|+|+|+|+++|||+|+|...+ +.+.|.|+|.+.+
T Consensus 5 ~k~~~kv~IP~~~~P~~n~iG~IIGP~G~tiK~Iq~eTG~kI~IrgkgS~~~~~~~~~~~~~~~~~~e~lhV~I~a~~~e 84 (131)
T 1k1g_A 5 TRVSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTANTME 84 (131)
T ss_dssp CCEEEEEECCTTTCCSHHHHHHHHCSSSHHHHHHHHHSCCEEEEEESTTSSSSSSSSCCCCCSCCSSCCEEEEEEESSHH
T ss_pred ceEEEEEEECCccccCcceeeeEECCCcHHHHHHHHHHCCeEEecCCcccccccccccccccccccCCCeEEEEEECCHH
Confidence 468999999998 778999999999999999999999996532 2568999999999
Q ss_pred HHHHHHHHHHHHhhh
Q psy2081 144 GIASAKRRLDLLLVF 158 (380)
Q Consensus 144 ~v~~A~~~I~~iv~~ 158 (380)
.+++|++.|+.|+..
T Consensus 85 ~~~~A~~~I~~ll~~ 99 (131)
T 1k1g_A 85 NVKKAVEQIRNILKQ 99 (131)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999999865
No 27
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=99.17 E-value=7.7e-12 Score=99.11 Aligned_cols=69 Identities=14% Similarity=0.274 Sum_probs=61.3
Q ss_pred eEEEEEcCCCCcceeeCCCCchHHHHHHHhCceEEcCCCCC------CCcEEEeeCCHHHHHHHHHHHHHHhhhhc
Q psy2081 91 YKYQCHIPKSFYPFIIGVKGSTKRRIESETNTQLSIPRQGQ------TGDIIISSYSERGIASAKRRLDLLLVFAR 160 (380)
Q Consensus 91 ~~~~v~Vp~~~~~~IIG~~G~t~k~ie~eT~~~I~ip~~~~------~~~i~I~g~~~~~v~~A~~~I~~iv~~~r 160 (380)
-+..+.||.+.+|.|||++|+++++|+++|||+|+|++.++ +..|+|+|. +++|..|+..|+.++.+..
T Consensus 3 ~t~~i~IP~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~g~~~r~v~I~G~-~~~v~~A~~~I~~~i~~~~ 77 (87)
T 1ec6_A 3 ELVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGS-PAATQAAQYLISQRVTYEQ 77 (87)
T ss_dssp SEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBSTTSCEEEEEEESS-HHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEChHHcCeeECCCcHhHHHHHHHhCCEEEEccCCCCCCCCCceEEEEEcC-HHHHHHHHHHHHHHHhccc
Confidence 46789999999999999999999999999999999997432 258999996 9999999999999997653
No 28
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.17 E-value=6.9e-12 Score=100.04 Aligned_cols=70 Identities=16% Similarity=0.277 Sum_probs=63.3
Q ss_pred CCceEEEEEcCCCCcceeeCCCCchHHHHHHHhCce-EEcCCCCCCCcEEEeeCCHHHHHHHHHHHHHHhhhh
Q psy2081 88 DGQYKYQCHIPKSFYPFIIGVKGSTKRRIESETNTQ-LSIPRQGQTGDIIISSYSERGIASAKRRLDLLLVFA 159 (380)
Q Consensus 88 ~g~~~~~v~Vp~~~~~~IIG~~G~t~k~ie~eT~~~-I~ip~~~~~~~i~I~g~~~~~v~~A~~~I~~iv~~~ 159 (380)
.+.+..++.||+++++.+||++|++||+|.++||++ |+|.. ++|.|.|.|.+.+++.+|+.+|+.+.+..
T Consensus 12 ~~~~i~~i~I~~dkIg~vIG~gGk~Ik~I~e~tGv~~IdI~e--ddG~V~I~g~~~ea~~~A~~~I~~ie~~~ 82 (91)
T 2cpq_A 12 AAAFHEEFVVREDLMGLAIGTHGSNIQQARKVPGVTAIELDE--DTGTFRIYGESADAVKKARGFLEFVEDFI 82 (91)
T ss_dssp SCSEEEEEECCHHHHHHHHTTTTHHHHHHHTSTTEEEEEEET--TTTEEEEEESSHHHHHHHHHHHSCCCCCC
T ss_pred cCceEEEEEEChHHhhhhcCCCcHHHHHHHHHhCCeEEEEEc--CCCEEEEEECCHHHHHHHHHHHHhhheEE
Confidence 345999999999999999999999999999999998 99953 45999999999999999999998887655
No 29
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.16 E-value=2.5e-11 Score=99.93 Aligned_cols=68 Identities=24% Similarity=0.239 Sum_probs=61.3
Q ss_pred eEEEEEcCCCCcceeeCCCCchHHHHHHHhCceEEcCCCCC------CCcEEEeeCCHHHHHHHHHHHHHHhhhh
Q psy2081 91 YKYQCHIPKSFYPFIIGVKGSTKRRIESETNTQLSIPRQGQ------TGDIIISSYSERGIASAKRRLDLLLVFA 159 (380)
Q Consensus 91 ~~~~v~Vp~~~~~~IIG~~G~t~k~ie~eT~~~I~ip~~~~------~~~i~I~g~~~~~v~~A~~~I~~iv~~~ 159 (380)
.+..|.||.++++.|||++|++||+|+++|+|+|+|++... +..|+|+| +.++|.+|+..|+.++.+.
T Consensus 7 ~~~~i~IP~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~~~~~~~~r~V~I~G-~~e~v~~A~~~I~~~i~e~ 80 (107)
T 2hh2_A 7 GEMTFSIPTHKCGLVIGRGGENVKAINQQTGAFVEISRQLPPNGDPNFKLFIIRG-SPQQIDHAKQLIEEKIEGP 80 (107)
T ss_dssp CCEEEEEEGGGTTTTSTTTTCHHHHHHHHSSSEEEECCCCCTTCCTTEEEEEEES-CHHHHHHHHHHHHHHSCSC
T ss_pred CeEEEEECHHHcCccCCCCcHHHHHHHHHhCCEEEEcCccCCCCCCCceEEEEEC-CHHHHHHHHHHHHHHHhcc
Confidence 37899999999999999999999999999999999987531 25799999 7999999999999999776
No 30
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=99.12 E-value=7.4e-11 Score=103.26 Aligned_cols=139 Identities=12% Similarity=0.028 Sum_probs=94.5
Q ss_pred CCceEEEEEcCCCCcceeeCCCCchHHHHHHHhCceEEcCCCCCC-CcEEEeeCCHHHHHHHHHHHHHHhhhhcc-----
Q psy2081 88 DGQYKYQCHIPKSFYPFIIGVKGSTKRRIESETNTQLSIPRQGQT-GDIIISSYSERGIASAKRRLDLLLVFARK----- 161 (380)
Q Consensus 88 ~g~~~~~v~Vp~~~~~~IIG~~G~t~k~ie~eT~~~I~ip~~~~~-~~i~I~g~~~~~v~~A~~~I~~iv~~~rk----- 161 (380)
+..++..+.||...+|.|||++|+++|+|+++|||+|+|++.+.. ..|+|+|. .++|.+|+..|..++.+...
T Consensus 2 ~~~~~~~~~vp~~~~g~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~r~v~I~G~-~~~v~~A~~~I~~~i~e~~~~~~~~ 80 (160)
T 2jzx_A 2 NVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGP-TNAIFKAFAMIIDKLEEDISSSMTN 80 (160)
T ss_dssp CCEEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCSEEEEECCTTTEEEEEEEEE-HHHHHHHHHHHHHHHHHHHTSCCCS
T ss_pred CccEEEEEEEchhheeeeECCCcHHHHHHHHHHCCEEEEcCCCCCceEEEEEeC-HHHHHHHHHHHHHHHHhhccccCCC
Confidence 456889999999999999999999999999999999999975432 47999996 89999999999988765321
Q ss_pred -----cCCcceeeeccCC-ChhHHHHHHHHHHHHhcccCcCCCCccccccCC----CCceeeEEeeccCCchhHHHHHHH
Q psy2081 162 -----KIPYTHLLSIPMN-VPNIQENFAKFKATVLSDFSRCRGIEESLFQEP----GRLHITMGMLMLADSVERDQAVEV 231 (380)
Q Consensus 162 -----k~~~thFIaIpl~-~~~I~~~~~~fq~~v~~~~~~~~gi~~~~fv~p----~~LHLTL~~L~l~~~~ev~~A~~~ 231 (380)
..+.+..+-||-. ...|.+.-....+.+.+.++ . .+.+++ ..-.=++ .+.. +.+.+++|...
T Consensus 81 ~~~~~~~~~~~~i~vp~~~~g~iIGkgG~~Ik~i~~~tg----a--~I~i~~~~~~~~~~~~v-~I~G-~~~~v~~A~~~ 152 (160)
T 2jzx_A 81 STAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTG----A--QVQVAGDMLPNSTERAI-TIAG-IPQSIIECVKQ 152 (160)
T ss_dssp SSCCCCCSEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHS----S--EECCCCCCSTTCCEEEE-EEEE-CHHHHHHHHHH
T ss_pred CccCCCCCEEEEEEEChhheeeEECCCCHHHHHHHHHhC----C--eEEECCCCCCCCCceEE-EEEc-CHHHHHHHHHH
Confidence 1233444555532 12344444455566665543 1 122222 1112233 3333 68889999888
Q ss_pred HHhh
Q psy2081 232 LQKC 235 (380)
Q Consensus 232 L~~~ 235 (380)
+.++
T Consensus 153 I~~~ 156 (160)
T 2jzx_A 153 ICVV 156 (160)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7665
No 31
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=99.11 E-value=1.5e-10 Score=101.55 Aligned_cols=137 Identities=12% Similarity=0.085 Sum_probs=96.6
Q ss_pred eEEEEEcCCCCcceeeCCCCchHHHHHHHhCceEEcCCCCC--C--CcEEEeeCCHHHHHHHHHHHHHHhhhhcc-----
Q psy2081 91 YKYQCHIPKSFYPFIIGVKGSTKRRIESETNTQLSIPRQGQ--T--GDIIISSYSERGIASAKRRLDLLLVFARK----- 161 (380)
Q Consensus 91 ~~~~v~Vp~~~~~~IIG~~G~t~k~ie~eT~~~I~ip~~~~--~--~~i~I~g~~~~~v~~A~~~I~~iv~~~rk----- 161 (380)
-+..+.||.+++|.|||++|+++|+|+++|||+|+|++.+. . ..|+|+| +++++..|+.+|..++.+...
T Consensus 3 ~~~~~~ip~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~~~~r~v~I~G-~~e~v~~A~~~I~~~~~e~~~~~~~~ 81 (163)
T 3krm_A 3 EMVQVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPETPDSKVRMVIITG-PPEAQFKAQGRIYGKLKEENFFGPKE 81 (163)
T ss_dssp EEEEEEEEGGGHHHHHCGGGHHHHHHHHHHTCEEEECCCSSTTCSEEEEEEEE-CHHHHHHHHHHHHHHHHHTTSSCSSC
T ss_pred eEEEEEechhhcceeECCCcHHHHHHHHHHCCeEEEcCCCCCCCCceEEEEEc-CHHHHHHHHHHHHHHHhccccccccc
Confidence 47889999999999999999999999999999999987542 1 3599999 599999999999998876521
Q ss_pred cCCcceeeeccCC-ChhHHHHHHHHHHHHhcccCcCCCCccccccCCC----CceeeEEeeccCCchhHHHHHHHHHhh
Q psy2081 162 KIPYTHLLSIPMN-VPNIQENFAKFKATVLSDFSRCRGIEESLFQEPG----RLHITMGMLMLADSVERDQAVEVLQKC 235 (380)
Q Consensus 162 k~~~thFIaIpl~-~~~I~~~~~~fq~~v~~~~~~~~gi~~~~fv~p~----~LHLTL~~L~l~~~~ev~~A~~~L~~~ 235 (380)
....+.-+.||-. ...|.+.-....+.|.+..+ . .+.++.. .-.-....+.. +.+.++.|.+.+.++
T Consensus 82 ~~~~~~~i~vp~~~~g~iIGkgG~~I~~i~~~tg----a--~I~i~~~~~~~~~~~~~v~I~G-~~~~v~~A~~~I~~~ 153 (163)
T 3krm_A 82 EVKLETHIRVPASAAGRVIGKGGKTVNELQNLTA----A--EVVVPRDQTPDENDQVIVKIIG-HFYASQMAQRKIRDI 153 (163)
T ss_dssp CCCEEEEEEEETTTHHHHHCGGGHHHHHHHHHHC----C--EEECCTTCCCCTTSEEEEEEEE-CHHHHHHHHHHHHHH
T ss_pred CCceEEEEEcChhheeeEEcCCChHHHHHHHHhC----C--eEEECCCCCCCCCCceEEEEEe-CHHHHHHHHHHHHHH
Confidence 1223445666654 34566666666777766543 2 2233322 11221222333 688899999888776
No 32
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=99.09 E-value=4e-10 Score=98.69 Aligned_cols=137 Identities=11% Similarity=0.098 Sum_probs=92.9
Q ss_pred eEEEEEcCCCCcceeeCCCCchHHHHHHHhCceEEcCCCCC-----CCcEEEeeCCHHHHHHHHHHHHHHhhhhcccC--
Q psy2081 91 YKYQCHIPKSFYPFIIGVKGSTKRRIESETNTQLSIPRQGQ-----TGDIIISSYSERGIASAKRRLDLLLVFARKKI-- 163 (380)
Q Consensus 91 ~~~~v~Vp~~~~~~IIG~~G~t~k~ie~eT~~~I~ip~~~~-----~~~i~I~g~~~~~v~~A~~~I~~iv~~~rkk~-- 163 (380)
.+..|.||.++++.|||++|+++|+|+++|||+|+|++.+. +..|+|+| ++++|.+|+..|..++.+.....
T Consensus 2 ~~~~~~Vp~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~~~~~r~v~I~G-~~~~v~~A~~~I~~ii~e~~~~~~~ 80 (164)
T 2jvz_A 2 TVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIG-DPYKVQQACEMVMDILRERDQGGFG 80 (164)
T ss_dssp EEEEEEECTTCHHHHTCTTTHHHHHHHHTSCSEEEECCCTTSSSSSCEEEEEEE-CHHHHHHHHHHHHHHTTCSSSCCCS
T ss_pred eEEEEEechhheeEEECCChHHHHHHHHHhCCeEEEecCCCCCCCCceEEEEEc-CHHHHHHHHHHHHHHHHhccCCCCC
Confidence 57889999999999999999999999999999999976431 23799999 58999999999999997653210
Q ss_pred ---------CcceeeeccCC-ChhHHHHHHHHHHHHhcccCcCCCCccccccCCC--CceeeEEeeccCCchhHHHHHHH
Q psy2081 164 ---------PYTHLLSIPMN-VPNIQENFAKFKATVLSDFSRCRGIEESLFQEPG--RLHITMGMLMLADSVERDQAVEV 231 (380)
Q Consensus 164 ---------~~thFIaIpl~-~~~I~~~~~~fq~~v~~~~~~~~gi~~~~fv~p~--~LHLTL~~L~l~~~~ev~~A~~~ 231 (380)
..+.-+.||-. ...|.+.-....+.|.+... . .+.+++. ..+-....+.. +.+.++.|..+
T Consensus 81 ~~~~~~~~~~~~~~i~vp~~~~g~iIGk~G~~I~~i~~~tg----~--~I~i~~~~~~~~~~~v~I~G-~~~~v~~A~~~ 153 (164)
T 2jvz_A 81 DRNEYGSRIGGGIDVPVPRHSVGVVIGRSGEMIKKIQNDAG----V--RIQFKQDDGTGPEKIAHIMG-PPDRCEHAARI 153 (164)
T ss_dssp SCSSCTTSCSSSBCCEEETTTHHHHHCSSSHHHHHHHHHTC----C--EEEECCCCTTSSEEEEEEES-CHHHHHHHHHH
T ss_pred CccccCCCCCceEEEEEChhhccccCCCCcHhHHHHHHHHC----C--eEEEeCCCCCCCcEEEEEEc-CHHHHHHHHHH
Confidence 11233444443 23454444455666665542 2 2333331 11122333334 47889999998
Q ss_pred HHhh
Q psy2081 232 LQKC 235 (380)
Q Consensus 232 L~~~ 235 (380)
+..+
T Consensus 154 I~~~ 157 (164)
T 2jvz_A 154 INDL 157 (164)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8776
No 33
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=99.09 E-value=1.8e-10 Score=102.32 Aligned_cols=139 Identities=12% Similarity=0.084 Sum_probs=93.8
Q ss_pred CceEEEEEcCCCCcceeeCCCCchHHHHHHHhCceEEcCCCCC-C--CcEEEeeCCHHHHHHHHHHHHHHhhhhcccC--
Q psy2081 89 GQYKYQCHIPKSFYPFIIGVKGSTKRRIESETNTQLSIPRQGQ-T--GDIIISSYSERGIASAKRRLDLLLVFARKKI-- 163 (380)
Q Consensus 89 g~~~~~v~Vp~~~~~~IIG~~G~t~k~ie~eT~~~I~ip~~~~-~--~~i~I~g~~~~~v~~A~~~I~~iv~~~rkk~-- 163 (380)
|..+..|.||.++++.|||++|+++|+|+++|+|+|+|++... . ..|+|+|. .++|.+|+..|..++.+.....
T Consensus 1 g~~~~~~~vp~~~vg~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~r~v~I~G~-~~~v~~A~~~I~~~~~~~~~~~~~ 79 (174)
T 1j4w_A 1 GSHMIDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPERIAQITGP-PDRAQHAAEIITDLLRSVQAGNPG 79 (174)
T ss_dssp CCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEEECCTTSCSEEEEEEEEC-HHHHHHHHHHHHHHHHHHC-----
T ss_pred CCeEEEEEEChhheeeeecCCchHHHHHHHHhCCEEEEecCCCCCCccEEEEEeC-HHHHHHHHHHHHHHHHhcccCCCC
Confidence 4578899999999999999999999999999999999975321 1 46899996 9999999999999997763210
Q ss_pred -----------------------CcceeeeccCC-ChhHHHHHHHHHHHHhcccCcCCCCccccccCCCC-----ceeeE
Q psy2081 164 -----------------------PYTHLLSIPMN-VPNIQENFAKFKATVLSDFSRCRGIEESLFQEPGR-----LHITM 214 (380)
Q Consensus 164 -----------------------~~thFIaIpl~-~~~I~~~~~~fq~~v~~~~~~~~gi~~~~fv~p~~-----LHLTL 214 (380)
..+..+.||-. ...|.++-.+..+.|.+... . .+.++... -.-..
T Consensus 80 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~i~vp~~~~g~iIGkgG~~Ik~I~~~tg----a--~I~i~~~~~~~~~~~~~~ 153 (174)
T 1j4w_A 80 GPGPGGRGRGRGQGNWNMGPPGGLQEFNFIVPTGKTGLIIGKGGETIKSISQQSG----A--RIELQRNPPPNADPNMKL 153 (174)
T ss_dssp ------------------------CEEEEEEETTTHHHHHCGGGHHHHHHHHHHC----C--EEEEECCCTTTSCTTEEE
T ss_pred CCCCCCCCCCCCCCccccCCCCCcEEEEEEEChHHcCeeECCCchHHHHHHHHHC----C--EEEECCCCCCCCCCCceE
Confidence 12445556654 23344444555566665542 2 12232210 11122
Q ss_pred EeeccCCchhHHHHHHHHHhh
Q psy2081 215 GMLMLADSVERDQAVEVLQKC 235 (380)
Q Consensus 215 ~~L~l~~~~ev~~A~~~L~~~ 235 (380)
..+.. +.+.+.+|..++.++
T Consensus 154 v~I~G-~~~~v~~A~~~I~~~ 173 (174)
T 1j4w_A 154 FTIRG-TPQQIDYARQLIEEK 173 (174)
T ss_dssp EEEEC-CHHHHHHHHHHHHHH
T ss_pred EEEEC-CHHHHHHHHHHHHHh
Confidence 23333 788899999888764
No 34
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=99.07 E-value=2.3e-10 Score=101.92 Aligned_cols=140 Identities=14% Similarity=0.103 Sum_probs=94.4
Q ss_pred CCceEEEEEcCCCCcceeeCCCCchHHHHHHHhCceEEcCCCCC-----C-CcEEEeeCCHHHHHHHHHHHHHHhhhhcc
Q psy2081 88 DGQYKYQCHIPKSFYPFIIGVKGSTKRRIESETNTQLSIPRQGQ-----T-GDIIISSYSERGIASAKRRLDLLLVFARK 161 (380)
Q Consensus 88 ~g~~~~~v~Vp~~~~~~IIG~~G~t~k~ie~eT~~~I~ip~~~~-----~-~~i~I~g~~~~~v~~A~~~I~~iv~~~rk 161 (380)
.|+++..+.||.+++|.|||++|+++|+|+++|||+|+|++.++ . ..|+|+|. .++|.+|+..|..++.+...
T Consensus 3 ~~~~~~~i~vp~~~ig~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~~~er~v~I~G~-~~~v~~A~~~I~~~~~~~~~ 81 (178)
T 2anr_A 3 GSQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGT-IEALNAVHGFIAEKIREMPQ 81 (178)
T ss_dssp CCCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBCTTSSEEEEEEEEC-HHHHHHHHHHHHHHHTCCCC
T ss_pred CCCEEEEEEEChhHeeeeECCCcHHHHHHHHHhCCeEEEecCCCCCCCCCCceEEEEeC-HHHHHHHHHHHHHHHhccCC
Confidence 56799999999999999999999999999999999999986432 1 36899995 89999999999999865421
Q ss_pred c-------------------CCcceeeeccCC-ChhHHHHHHHHHHHHhcccCcCCCCccccccCCCC----ceeeEEee
Q psy2081 162 K-------------------IPYTHLLSIPMN-VPNIQENFAKFKATVLSDFSRCRGIEESLFQEPGR----LHITMGML 217 (380)
Q Consensus 162 k-------------------~~~thFIaIpl~-~~~I~~~~~~fq~~v~~~~~~~~gi~~~~fv~p~~----LHLTL~~L 217 (380)
. ...+..+-||-. ...|.+.-....+.|.+.++ . .+.+++.. ..-....+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~Vp~~~vg~iIGkgG~~Ik~i~~~tg----a--~I~i~~~~~~~~~~~~~v~I 155 (178)
T 2anr_A 82 NVAKTEPVSILQPQTTVNPDRANQVKIIVPNSTAGLIIGKGGATVKAIMEQSG----A--WVQLSQKPDGINLQNRVVTV 155 (178)
T ss_dssp C-----------------CGGGGEEEEEEEHHHHHHHHCGGGHHHHHHHHHSS----C--EEEECCCC----CCEEEEEE
T ss_pred ccccCCcccccCCccCCCCCCceEEEEEEchhheeeeECCCcHHHHHHHHHHC----C--EEEEeCCCCCCCCCceEEEE
Confidence 1 012344444433 12344444555666666543 2 23333321 11122223
Q ss_pred ccCCchhHHHHHHHHHhh
Q psy2081 218 MLADSVERDQAVEVLQKC 235 (380)
Q Consensus 218 ~l~~~~ev~~A~~~L~~~ 235 (380)
.. +.+.+.+|...+.++
T Consensus 156 ~G-~~~~v~~A~~~I~~~ 172 (178)
T 2anr_A 156 SG-EPEQNRKAVELIIQK 172 (178)
T ss_dssp ES-SHHHHHHHHHHHHHH
T ss_pred Ec-CHHHHHHHHHHHHHH
Confidence 33 457888888888775
No 35
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=99.06 E-value=1.9e-10 Score=100.93 Aligned_cols=74 Identities=18% Similarity=0.240 Sum_probs=64.2
Q ss_pred CceEEEEEcCCCCcceeeCCCCchHHHHHHHhCceEEcCCCCC---CC--cEEEeeCCHHHHHHHHHHHHHHhhhhcccC
Q psy2081 89 GQYKYQCHIPKSFYPFIIGVKGSTKRRIESETNTQLSIPRQGQ---TG--DIIISSYSERGIASAKRRLDLLLVFARKKI 163 (380)
Q Consensus 89 g~~~~~v~Vp~~~~~~IIG~~G~t~k~ie~eT~~~I~ip~~~~---~~--~i~I~g~~~~~v~~A~~~I~~iv~~~rkk~ 163 (380)
..++..+.||.++++.|||++|+++++|+++|||+|+||+.+. +. .|+|+| +.++|.+|+..|+.++.+.+.+.
T Consensus 83 ~~~~~~i~vp~~~~g~iIGkgG~~I~~i~~~tga~I~i~~~~~~~~~~~~~v~I~G-~~~~v~~A~~~I~~~i~~~~~~~ 161 (163)
T 3krm_A 83 VKLETHIRVPASAAGRVIGKGGKTVNELQNLTAAEVVVPRDQTPDENDQVIVKIIG-HFYASQMAQRKIRDILAQVKQQH 161 (163)
T ss_dssp CCEEEEEEEETTTHHHHHCGGGHHHHHHHHHHCCEEECCTTCCCCTTSEEEEEEEE-CHHHHHHHHHHHHHHHHHHTC--
T ss_pred CceEEEEEcChhheeeEEcCCChHHHHHHHHhCCeEEECCCCCCCCCCceEEEEEe-CHHHHHHHHHHHHHHHHHHHHhh
Confidence 4577899999999999999999999999999999999987542 22 589999 69999999999999999987654
No 36
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.06 E-value=3.5e-10 Score=94.72 Aligned_cols=82 Identities=20% Similarity=0.238 Sum_probs=67.1
Q ss_pred eEEEEEcCCC-------CcceeeCCCCchHHHHHHHhCceEEcCCCC-------------CCCcEEEeeCCHHHHHHHHH
Q psy2081 91 YKYQCHIPKS-------FYPFIIGVKGSTKRRIESETNTQLSIPRQG-------------QTGDIIISSYSERGIASAKR 150 (380)
Q Consensus 91 ~~~~v~Vp~~-------~~~~IIG~~G~t~k~ie~eT~~~I~ip~~~-------------~~~~i~I~g~~~~~v~~A~~ 150 (380)
.+..|.||.+ |++.|||++|.|+|+|+++|||+|+|-..+ +.+.|.|++.+.+++++|++
T Consensus 12 ~~~ki~ip~~~~~p~fn~ig~IIGpgG~tiK~I~~eTG~kI~I~G~gS~~~e~~~~~e~~e~l~V~I~a~~~e~i~~A~~ 91 (119)
T 2yqr_A 12 VQDKLFVGLEHAVPTFNVKEKVEGPGCSYLQHIQIETGAKVFLRGKGSGCIEPASGREAFEPMYIYISHPKPEGLAAAKK 91 (119)
T ss_dssp EEEEEECCCTTSCTTTCHHHHHSCGGGHHHHHHHHHHCCEEEEESBTTTCCCTTTSSCCSSBCEEEEEESSHHHHHHHHH
T ss_pred EEEEEEcCCccCCCCCCeeeeEECCCChHHHHHHHHHCCEEEEecCCccccccccccccCCCcEEEEEeCCHHHHHHHHH
Confidence 4667888765 778999999999999999999999996332 34789999999999999999
Q ss_pred HHHHHhhhhcccCCcceeeeccCCChhHHHHHHHHHHHHhc
Q psy2081 151 RLDLLLVFARKKIPYTHLLSIPMNVPNIQENFAKFKATVLS 191 (380)
Q Consensus 151 ~I~~iv~~~rkk~~~thFIaIpl~~~~I~~~~~~fq~~v~~ 191 (380)
+|+.|+.. +.+.+..|++....
T Consensus 92 ~Ie~Ll~~-------------------v~~~~~~~~~q~~~ 113 (119)
T 2yqr_A 92 LCENLLQT-------------------VHAEYSRFVNQINT 113 (119)
T ss_dssp HHHHHHHH-------------------HHHHHHHHHHHHSC
T ss_pred HHHHHhhc-------------------hHHHHHHHHHhhCC
Confidence 99999844 46667777766543
No 37
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=98.91 E-value=4.2e-10 Score=98.55 Aligned_cols=68 Identities=15% Similarity=0.180 Sum_probs=61.3
Q ss_pred eEEEEEcCCCCcceeeCCCCchHHHHHHHhCceEEcCCCCC---CCcEEEeeCCHHHHHHHHHHHHHHhhhh
Q psy2081 91 YKYQCHIPKSFYPFIIGVKGSTKRRIESETNTQLSIPRQGQ---TGDIIISSYSERGIASAKRRLDLLLVFA 159 (380)
Q Consensus 91 ~~~~v~Vp~~~~~~IIG~~G~t~k~ie~eT~~~I~ip~~~~---~~~i~I~g~~~~~v~~A~~~I~~iv~~~ 159 (380)
++..+.||..+++.|||++|+++|+|+++|||+|+|++.+. +..|+|+|. .++|..|+..|+.++.+.
T Consensus 91 ~~~~i~vp~~~~g~iIGk~G~~I~~i~~~tg~~I~i~~~~~~~~~~~v~I~G~-~~~v~~A~~~I~~~i~~~ 161 (164)
T 2jvz_A 91 GGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGPEKIAHIMGP-PDRCEHAARIINDLLQSL 161 (164)
T ss_dssp SSBCCEEETTTHHHHHCSSSHHHHHHHHHTCCEEEECCCCTTSSEEEEEEESC-HHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEChhhccccCCCCcHhHHHHHHHHCCeEEEeCCCCCCCcEEEEEEcC-HHHHHHHHHHHHHHHhhh
Confidence 46788999999999999999999999999999999987543 257999996 999999999999999776
No 38
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=98.85 E-value=1.3e-09 Score=95.31 Aligned_cols=68 Identities=16% Similarity=0.268 Sum_probs=60.6
Q ss_pred ceEEEEEcCCCCcceeeCCCCchHHHHHHHhCceEEcCCC---C-CCCcEEEeeCCHHHHHHHHHHHHHHhhh
Q psy2081 90 QYKYQCHIPKSFYPFIIGVKGSTKRRIESETNTQLSIPRQ---G-QTGDIIISSYSERGIASAKRRLDLLLVF 158 (380)
Q Consensus 90 ~~~~~v~Vp~~~~~~IIG~~G~t~k~ie~eT~~~I~ip~~---~-~~~~i~I~g~~~~~v~~A~~~I~~iv~~ 158 (380)
..+..+.||.++++.|||++|+++++|+++|||+|+|++. + .+..|+|+| ++++|.+|+..|..++.+
T Consensus 88 ~~~~~i~vp~~~~g~iIGkgG~~Ik~i~~~tga~I~i~~~~~~~~~~~~v~I~G-~~~~v~~A~~~I~~~i~e 159 (160)
T 2jzx_A 88 PVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAG-IPQSIIECVKQICVVMLE 159 (160)
T ss_dssp SEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHSSEECCCCCCSTTCCEEEEEEEE-CHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEEChhheeeEECCCCHHHHHHHHHhCCeEEECCCCCCCCCceEEEEEc-CHHHHHHHHHHHHHHHhc
Confidence 4789999999999999999999999999999999999862 2 236799999 699999999999998765
No 39
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=98.83 E-value=2e-09 Score=95.49 Aligned_cols=66 Identities=17% Similarity=0.294 Sum_probs=58.1
Q ss_pred ceEEEEEcCCCCcceeeCCCCchHHHHHHHhCceEEcCCCCC------CCcEEEeeCCHHHHHHHHHHHHHHh
Q psy2081 90 QYKYQCHIPKSFYPFIIGVKGSTKRRIESETNTQLSIPRQGQ------TGDIIISSYSERGIASAKRRLDLLL 156 (380)
Q Consensus 90 ~~~~~v~Vp~~~~~~IIG~~G~t~k~ie~eT~~~I~ip~~~~------~~~i~I~g~~~~~v~~A~~~I~~iv 156 (380)
..+..+.||.++++.|||++|+++|+|+++|||+|+|++... +..|+|+| +.++|..|+..|+.++
T Consensus 103 ~~~~~i~vp~~~~g~iIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~~~~v~I~G-~~~~v~~A~~~I~~~i 174 (174)
T 1j4w_A 103 LQEFNFIVPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRG-TPQQIDYARQLIEEKI 174 (174)
T ss_dssp -CEEEEEEETTTHHHHHCGGGHHHHHHHHHHCCEEEEECCCTTTSCTTEEEEEEEC-CHHHHHHHHHHHHHHC
T ss_pred cEEEEEEEChHHcCeeECCCchHHHHHHHHHCCEEEECCCCCCCCCCCceEEEEEC-CHHHHHHHHHHHHHhC
Confidence 468899999999999999999999999999999999987421 25799999 6999999999998874
No 40
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=98.80 E-value=1.7e-09 Score=96.24 Aligned_cols=69 Identities=14% Similarity=0.140 Sum_probs=60.9
Q ss_pred CceEEEEEcCCCCcceeeCCCCchHHHHHHHhCceEEcCCCCC-----CCcEEEeeCCHHHHHHHHHHHHHHhhh
Q psy2081 89 GQYKYQCHIPKSFYPFIIGVKGSTKRRIESETNTQLSIPRQGQ-----TGDIIISSYSERGIASAKRRLDLLLVF 158 (380)
Q Consensus 89 g~~~~~v~Vp~~~~~~IIG~~G~t~k~ie~eT~~~I~ip~~~~-----~~~i~I~g~~~~~v~~A~~~I~~iv~~ 158 (380)
+..+..+.||.++++.|||++|+++|+|+++|||+|+|++... +..|+|+|. .++|.+|+..|..++.+
T Consensus 102 ~~~~~~i~Vp~~~vg~iIGkgG~~Ik~i~~~tga~I~i~~~~~~~~~~~~~v~I~G~-~~~v~~A~~~I~~~i~e 175 (178)
T 2anr_A 102 RANQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGINLQNRVVTVSGE-PEQNRKAVELIIQKIQE 175 (178)
T ss_dssp GGGEEEEEEEHHHHHHHHCGGGHHHHHHHHHSSCEEEECCCC----CCEEEEEEESS-HHHHHHHHHHHHHHHHS
T ss_pred CceEEEEEEchhheeeeECCCcHHHHHHHHHHCCEEEEeCCCCCCCCCceEEEEEcC-HHHHHHHHHHHHHHHHh
Confidence 3468899999999999999999999999999999999987532 257999996 79999999999998865
No 41
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=98.73 E-value=6.6e-09 Score=102.64 Aligned_cols=67 Identities=19% Similarity=0.267 Sum_probs=57.7
Q ss_pred CceEEEEEcCCCCcceeeCCCC--chHHHHHHHhCceEEcCCCCC-------CCcEEEeeCCHHHHHHHHHHHHHHh
Q psy2081 89 GQYKYQCHIPKSFYPFIIGVKG--STKRRIESETNTQLSIPRQGQ-------TGDIIISSYSERGIASAKRRLDLLL 156 (380)
Q Consensus 89 g~~~~~v~Vp~~~~~~IIG~~G--~t~k~ie~eT~~~I~ip~~~~-------~~~i~I~g~~~~~v~~A~~~I~~iv 156 (380)
..|+.++.||+.+|++|||++| ..|++|+++|||+|++|+.++ ...|+|+| ++++|..|+++|..++
T Consensus 184 ~~~s~~v~V~~~~H~~IIGk~G~n~~IkkIr~eTGv~I~FP~~~d~~d~~~~~~~ItItG-s~e~V~~Ark~I~~lL 259 (376)
T 3n89_A 184 NNFTLHFTLSTYYVDQVLGSSSTAQLMPVIERETTTIISYPCYNNRNETRGNIYEIKVVG-NIDNVLKARRYIMDLL 259 (376)
T ss_dssp SCEEEEEEEEGGGHHHHTCCTTSCCHHHHHHHHHTCEEECC---------CCEEEEEEES-CHHHHHHHHHHHHHTS
T ss_pred cceEEEEEeCHHHHHHhhcCCCcchHHHHHHHhhCCEEECCCCCCcccccCCceEEEEEe-CHHHHHHHHHHHHhhC
Confidence 4599999999999999999999 667999999999999997654 13699999 4999999999999987
No 42
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=98.64 E-value=1.3e-08 Score=88.05 Aligned_cols=66 Identities=20% Similarity=0.343 Sum_probs=58.1
Q ss_pred EEEEcCCCCcceeeCCCCchHHHHHHHhCc-eEEcCCCCCC------C--cEEEeeCCHHHHHHHHHHHHHHhhhh
Q psy2081 93 YQCHIPKSFYPFIIGVKGSTKRRIESETNT-QLSIPRQGQT------G--DIIISSYSERGIASAKRRLDLLLVFA 159 (380)
Q Consensus 93 ~~v~Vp~~~~~~IIG~~G~t~k~ie~eT~~-~I~ip~~~~~------~--~i~I~g~~~~~v~~A~~~I~~iv~~~ 159 (380)
..+.||.+.++.+|||+|.++|.+.+.||+ +|+|++.++. + .|+|+|. +++|+.|+..|+.++.++
T Consensus 69 ~~v~Vp~~~~g~~IGK~G~nIr~i~~~tG~~~I~i~~~~~~~~~~~~~~~~vtI~G~-~~~v~~Ak~li~~~l~~l 143 (144)
T 2qnd_A 69 DVIQVPRNLVGKVIGKNGKLIQEIVDKSGVVRVRIEAENEKNVPQEEGMVPFVFVGT-KDSIANATVLLDYHLNYL 143 (144)
T ss_dssp EEEEEEGGGHHHHHCGGGHHHHHHHHHHTCSEEEEEEECTTCCCCCTTEEEEEEEEE-HHHHHHHHHHHHHHHHTC
T ss_pred EEEEECHHHcCeeECCCCHHHHHHHHHHCCEEEEEcCCCCCCccccCCeeEEEEEeC-HHHHHHHHHHHHHHHHhc
Confidence 889999999999999999999999999996 9999864322 2 3889995 999999999999998765
No 43
>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1
Probab=98.58 E-value=4.5e-08 Score=84.02 Aligned_cols=67 Identities=22% Similarity=0.389 Sum_probs=54.3
Q ss_pred eEEEEEcCC------CCcceeeCCCCchHHHHHHHhCceEEcCCCCCC---------------------CcEEEeeCCHH
Q psy2081 91 YKYQCHIPK------SFYPFIIGVKGSTKRRIESETNTQLSIPRQGQT---------------------GDIIISSYSER 143 (380)
Q Consensus 91 ~~~~v~Vp~------~~~~~IIG~~G~t~k~ie~eT~~~I~ip~~~~~---------------------~~i~I~g~~~~ 143 (380)
.+..|.||. .|+|.|||++|+|+|+||++|||+|.|-..|+. -.|.|+|.+.+
T Consensus 2 ~~~Ki~IP~~~~P~~NfiG~IiGPrG~t~K~ie~eTg~kI~IrGkGS~kd~~~e~~~~g~~~~~~~~epLHV~Isa~~~~ 81 (140)
T 2bl5_A 2 LQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQ 81 (140)
T ss_dssp EEEEEECCTTTCSSSCHHHHHTTTTHHHHHHHHHHHSEEEEEESTTSSCCHHHHHTSTTSHHHHTTTSCCEEEEEECSCC
T ss_pred ceeEEEcCcccCCCCCeeeEEECCCcchHHHHHHHHCCeEEEecCCCcccccccccccCCCCccccCCCcEEEEEecCch
Confidence 356778885 457899999999999999999999999865521 17899997654
Q ss_pred -----HHHHHHHHHHHHhh
Q psy2081 144 -----GIASAKRRLDLLLV 157 (380)
Q Consensus 144 -----~v~~A~~~I~~iv~ 157 (380)
.+++|++.|+.++.
T Consensus 82 ~~~~~~l~~A~~~I~~lL~ 100 (140)
T 2bl5_A 82 NRAELKLKRAVEEVKKLLV 100 (140)
T ss_dssp HHHHHHHHHHHHHHHHHSS
T ss_pred hhHHHHHHHHHHHHHHHCC
Confidence 78899999988873
No 44
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=98.54 E-value=4.3e-08 Score=90.45 Aligned_cols=63 Identities=30% Similarity=0.414 Sum_probs=58.7
Q ss_pred EEEEEcCCCCcceeeCCCCchHHHHHHHhCceEEcCCCCCCCcEEEeeCC----HHHHHHHHHHHHHHh
Q psy2081 92 KYQCHIPKSFYPFIIGVKGSTKRRIESETNTQLSIPRQGQTGDIIISSYS----ERGIASAKRRLDLLL 156 (380)
Q Consensus 92 ~~~v~Vp~~~~~~IIG~~G~t~k~ie~eT~~~I~ip~~~~~~~i~I~g~~----~~~v~~A~~~I~~iv 156 (380)
..++.||+..++.|||++|++++.|+++||++|+|+. ++|.|.|.|.+ ++++.+|++.|..++
T Consensus 35 i~~i~IP~~kig~lIG~gGk~Ik~I~e~tgvkI~I~~--~~g~V~I~~~~~t~d~~~i~kA~~~I~~i~ 101 (219)
T 2e3u_A 35 EEYVKIPKDRIAVLIGKKGQTKKEIEKRTKTKITIDS--ETGEVWITSTKETEDPLAVWKARDIVLAIG 101 (219)
T ss_dssp EEEEECCHHHHHHHHCGGGHHHHHHHHHHTEEEEECT--TTCEEEEEECTTCCSHHHHHHHHHHHHHHH
T ss_pred EEEEEeCHHHhhhhhcccHHHHHHHHHHHCcEEEEEc--CCCEEEEecCCCCCCHHHHHHHHHHHHHHh
Confidence 6689999999999999999999999999999999974 46889999976 899999999999998
No 45
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=98.52 E-value=2.5e-08 Score=104.99 Aligned_cols=64 Identities=13% Similarity=0.166 Sum_probs=58.3
Q ss_pred ceEEEEEcCCCCcceeeCCCCchHHHHHHHhCceEEcCCCCCCCcEEEeeCCHHHHHHHHHHHHHHh
Q psy2081 90 QYKYQCHIPKSFYPFIIGVKGSTKRRIESETNTQLSIPRQGQTGDIIISSYSERGIASAKRRLDLLL 156 (380)
Q Consensus 90 ~~~~~v~Vp~~~~~~IIG~~G~t~k~ie~eT~~~I~ip~~~~~~~i~I~g~~~~~v~~A~~~I~~iv 156 (380)
.-..++.||++.++.|||+||++||+|+++|||+|+|. ++|.|.|.|.+++.+++|+++|+.|+
T Consensus 566 p~~~~~~I~~~kI~~vIG~gG~~Ik~I~e~tg~~I~I~---d~G~V~I~~~~~~~~~~A~~~I~~i~ 629 (630)
T 3u1k_A 566 PVVETVQVPLSKRAKFVGPGGYNLKKLQAETGVTISQV---DEETFSVFAPTPSAMHEARDFITEIC 629 (630)
T ss_dssp CEEEEEECCHHHHHHHHCGGGHHHHHHHHHHCCEEEEC---SSSEEEEEESSHHHHHHHHHHTTC--
T ss_pred CeEEEEEeChhHhheeECCCChhHHHHHHHHCCEEEEc---CCcEEEEEeCCHHHHHHHHHHHHHHh
Confidence 35789999999999999999999999999999999995 57999999999999999999998875
No 46
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=98.16 E-value=3.6e-07 Score=97.30 Aligned_cols=66 Identities=21% Similarity=0.208 Sum_probs=14.1
Q ss_pred eEEEEEcCCCCcceeeCCCCchHHHHHHHhCceEEcCCCCCCCcEEEeeCCHHHHHHHHHHHHHHhhhh
Q psy2081 91 YKYQCHIPKSFYPFIIGVKGSTKRRIESETNTQLSIPRQGQTGDIIISSYSERGIASAKRRLDLLLVFA 159 (380)
Q Consensus 91 ~~~~v~Vp~~~~~~IIG~~G~t~k~ie~eT~~~I~ip~~~~~~~i~I~g~~~~~v~~A~~~I~~iv~~~ 159 (380)
-..++.||++.++.|||+||.+||+|.++||++|+|. ++|.|.|.+.+++.+++|+++|+.++.+.
T Consensus 570 ~~~~~~i~~~ki~~vig~gg~~i~~i~~~tg~~idi~---ddG~v~I~~~~~~~~~~A~~~i~~i~~~~ 635 (726)
T 4aid_A 570 KIETINIPTDKIREVIGSGGKVIREIVATTGAKVDIN---DDGVVKVSASDGAKIKAAIDWIKSITDEA 635 (726)
T ss_dssp C----------------------------------------------CCSCHHHHHHHHHC--------
T ss_pred eEEEEeCCHHHHHhhcCCCchhHHHHHHHHCCceeEE---CCceEEEEeCCHHHHHHHHHHHHHHhhhh
Confidence 3789999999999999999999999999999999994 57999999999999999999999998644
No 47
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=98.11 E-value=2.7e-06 Score=78.33 Aligned_cols=54 Identities=26% Similarity=0.231 Sum_probs=48.6
Q ss_pred CcceeeCCCCchHHHHHHHhCceEEcCCCCCCCcEEEeeCCHHHHHHHHHHHHHHhhhh
Q psy2081 101 FYPFIIGVKGSTKRRIESETNTQLSIPRQGQTGDIIISSYSERGIASAKRRLDLLLVFA 159 (380)
Q Consensus 101 ~~~~IIG~~G~t~k~ie~eT~~~I~ip~~~~~~~i~I~g~~~~~v~~A~~~I~~iv~~~ 159 (380)
..|.|||++|+|++.||+.|||+|.|+. ..|.|.|. .++++.|++.|+.++...
T Consensus 139 ~~GriIGk~G~tik~ie~~Tg~~I~v~~----~~v~i~G~-~~~i~~A~~~i~~li~g~ 192 (219)
T 2e3u_A 139 VRGRIIGRKGRTRQIIEEMSGASVSVYG----KTVAIIGN-PIQIEIAKTAIEKLARGS 192 (219)
T ss_dssp HHHHHHCGGGHHHHHHHHHHCCEEEEET----TEEEEEEC-HHHHHHHHHHHHHHHTTC
T ss_pred hhheeECCCchHHHHHHHHhCceEEECC----eEEEEEeC-HHHHHHHHHHHHHHHcCC
Confidence 4778999999999999999999999963 56999995 999999999999999554
No 48
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=97.94 E-value=3.1e-06 Score=72.92 Aligned_cols=129 Identities=10% Similarity=0.144 Sum_probs=78.1
Q ss_pred CceEEEEEcCCCCcceeeCCCCchHHHHHHHhCceEEcCCCCC-CCcEEEeeCCHHHHHHHHHHHHHHhhhhcccCCcce
Q psy2081 89 GQYKYQCHIPKSFYPFIIGVKGSTKRRIESETNTQLSIPRQGQ-TGDIIISSYSERGIASAKRRLDLLLVFARKKIPYTH 167 (380)
Q Consensus 89 g~~~~~v~Vp~~~~~~IIG~~G~t~k~ie~eT~~~I~ip~~~~-~~~i~I~g~~~~~v~~A~~~I~~iv~~~rkk~~~th 167 (380)
.+|+..+.||...+|.+||++|++++.|++++| |++....+ ...+++.|.+++.|.+|+..+ .+. ..
T Consensus 2 ~~~~~~~~Vp~~~vG~~IG~~G~~I~~i~~e~g--I~ii~~~~~~~~~i~~~~~p~~v~~~~~~l-~~~---------e~ 69 (144)
T 2qnd_A 2 SRFHEQFIVREDLMGLAIGTHGANIQQARKVPG--VTAIDLDEDTCTFHIYGEDQDAVKKARSFL-EFA---------ED 69 (144)
T ss_dssp --CEEEEECCGGGHHHHHCGGGHHHHHHHTSTT--EEEEEEETTTTEEEEEESSHHHHHHHHHHH-CEE---------EE
T ss_pred CceEEEEEECCcceeeEECCChhHHHHHHHHHC--CeEeccCCCchheeeccCCHHHHHHHHHhh-hcc---------eE
Confidence 358999999999999999999999999999999 55433223 356888888899999987632 111 24
Q ss_pred eeeccCCC-hhHHHHHHHHHHHHhcccCcCCCCccccccC-CC------CceeeEEeeccCCchhHHHHHHHHHhh
Q psy2081 168 LLSIPMNV-PNIQENFAKFKATVLSDFSRCRGIEESLFQE-PG------RLHITMGMLMLADSVERDQAVEVLQKC 235 (380)
Q Consensus 168 FIaIpl~~-~~I~~~~~~fq~~v~~~~~~~~gi~~~~fv~-p~------~LHLTL~~L~l~~~~ev~~A~~~L~~~ 235 (380)
.+.+|-.. .-+.++-.+-.+.+.+.++ ...-.+.+ .+ .=..++.+.| +.+.++.|+.+|...
T Consensus 70 ~v~Vp~~~~g~~IGK~G~nIr~i~~~tG----~~~I~i~~~~~~~~~~~~~~~~vtI~G--~~~~v~~Ak~li~~~ 139 (144)
T 2qnd_A 70 VIQVPRNLVGKVIGKNGKLIQEIVDKSG----VVRVRIEAENEKNVPQEEGMVPFVFVG--TKDSIANATVLLDYH 139 (144)
T ss_dssp EEEEEGGGHHHHHCGGGHHHHHHHHHHT----CSEEEEEEECTTCCCCCTTEEEEEEEE--EHHHHHHHHHHHHHH
T ss_pred EEEECHHHcCeeECCCCHHHHHHHHHHC----CEEEEEcCCCCCCccccCCeeEEEEEe--CHHHHHHHHHHHHHH
Confidence 45555431 2233333333444444331 10000111 11 1123344445 678899999888765
No 49
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=97.79 E-value=1.6e-05 Score=71.64 Aligned_cols=65 Identities=14% Similarity=0.217 Sum_probs=57.0
Q ss_pred EEEEEcCCCCcceeeCCCCchHHHHHHHhCceEEcCCCCCCCcEEEe----eCCHHHHHHHHHHHHHHhhh
Q psy2081 92 KYQCHIPKSFYPFIIGVKGSTKRRIESETNTQLSIPRQGQTGDIIIS----SYSERGIASAKRRLDLLLVF 158 (380)
Q Consensus 92 ~~~v~Vp~~~~~~IIG~~G~t~k~ie~eT~~~I~ip~~~~~~~i~I~----g~~~~~v~~A~~~I~~iv~~ 158 (380)
+..+.||+...+.|||++|++++.|++.++++|+|.. .++.|+|. ..++..+.+|++.|..+...
T Consensus 5 ~~~i~VP~~rvg~liGk~g~~~k~i~e~~g~~i~id~--~~~~V~i~t~~~t~dp~~i~KA~dlI~ai~rg 73 (191)
T 1tua_A 5 RIYVKVKPERLGAVIGPRGEVKAEIMRRTGTVITVDT--ENSMVIVEPEAEGIPPVNLMKAAEVVKAISLG 73 (191)
T ss_dssp CEEEECCGGGHHHHHCGGGHHHHHHHHHHTEEEEEET--TTTEEEEEESSTTSCHHHHHHHHHHHHHHHHT
T ss_pred ceEEECCHHHhhHHHhcCHhHHHHHHHHHCcEEEEEc--CCCeEEEEeCCCCCCHHHHHHHHHHHHHHHcC
Confidence 4689999999999999999999999999999999964 46788887 13689999999999988753
No 50
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=97.76 E-value=3.2e-05 Score=69.65 Aligned_cols=54 Identities=24% Similarity=0.274 Sum_probs=48.8
Q ss_pred CCcceeeCCCCchHHHHHHHhCceEEcCCCCCCCcEEEeeCCHHHHHHHHHHHHHHhhh
Q psy2081 100 SFYPFIIGVKGSTKRRIESETNTQLSIPRQGQTGDIIISSYSERGIASAKRRLDLLLVF 158 (380)
Q Consensus 100 ~~~~~IIG~~G~t~k~ie~eT~~~I~ip~~~~~~~i~I~g~~~~~v~~A~~~I~~iv~~ 158 (380)
...|.|||++|.|++.||..|||+|.|.. ..|.|.|. .++++.|+..|+.++..
T Consensus 107 r~~GrIIGk~G~tik~iE~~Tg~~I~v~~----~~v~i~G~-~~~i~~Ar~~i~~li~g 160 (191)
T 1tua_A 107 RIKGRIIGEGGRARRTIEEMTDTYINVGE----YEVAIIGD-YERAMAAKQAIEMLAEG 160 (191)
T ss_dssp HHHHHHHCGGGHHHHHHHHHHTCEEEECS----SEEEEEEE-HHHHHHHHHHHHHHHTT
T ss_pred HHhhheeCCCccHHHHHHHHHCceEEEcC----CEEEEEeC-hHHHHHHHHHHHHHHcC
Confidence 35899999999999999999999999963 48999995 99999999999999964
No 51
>2fsq_A ATU0111 protein; alpha-beta barrel, structural genomics, PSI, protein structu initiative, midwest center for structural genomics; HET: MSE; 1.40A {Agrobacterium tumefaciens str} SCOP: d.61.1.4
Probab=97.69 E-value=0.00012 Score=68.38 Aligned_cols=168 Identities=11% Similarity=0.069 Sum_probs=101.0
Q ss_pred ceeeeccCCChhHHHHHHHHHHHHhcccCcCCCCccccccCCCCceeeEEeeccC-------------CchhHHHHHHHH
Q psy2081 166 THLLSIPMNVPNIQENFAKFKATVLSDFSRCRGIEESLFQEPGRLHITMGMLMLA-------------DSVERDQAVEVL 232 (380)
Q Consensus 166 thFIaIpl~~~~I~~~~~~fq~~v~~~~~~~~gi~~~~fv~p~~LHLTL~~L~l~-------------~~~ev~~A~~~L 232 (380)
+.+||-+-.+......+..+|+.+.+... -+.-.|.||+.+|+||.=+.-- .+..++.+.+.+
T Consensus 43 nTvI~~l~~~s~~~~~l~~iq~~L~~~~~----~~~~~~lPpsS~HMTvfdgv~e~~r~~~~wP~~L~~d~~l~~~~~~~ 118 (243)
T 2fsq_A 43 NTVVCHLVEGSQTESAIVSTRQRFLDMPE----ASQLAFTPVSSLHMTVFQGVIESRRALPYWPQTLPLDTPIDAVTDYY 118 (243)
T ss_dssp EEEEEEBCTTSHHHHHHHHHHHHHHTSGG----GGGEEECCGGGCEEEEEEEEETTCCSTTSSCTTSCTTCCHHHHHHHH
T ss_pred CeEEEecCCCChHHHHHHHHHHHHHhccc----cCceeeCCchhhhhhhccccccccccCCCCCccCcccchHHHHHHHH
Confidence 35555544444567788888888876421 2234588999999999764331 144577777777
Q ss_pred HhhcccccccccccCceEEEecceecCCCCCCceeEEEEEecC-ChHHHHHHHHHHHHHHHHCCCccccccCCCceeeEE
Q psy2081 233 QKCGNNIILPILRSQRIKINLKGLEIMNDDPAEVDILYAKVVD-DSGLVQKLCDDVVQYFISQHLISKAYQKYDTVKMHV 311 (380)
Q Consensus 233 ~~~~~~~i~~~~~~~pf~l~l~Glg~F~ddp~~~rVLya~v~d-~~~~Lq~L~~~l~~~f~~~Gl~~~~~~e~r~fkpHi 311 (380)
.+.-..+ ....||.+.+.|+. + .-|..+...+ ...+|.++.+.|.+ ..|+.. .+...|+.||
T Consensus 119 ~~~l~~~----~~~~p~~~~v~~l~--~-----~~v~L~Pade~~~~~L~~~R~~l~q---~lGi~~---p~hd~y~fHI 181 (243)
T 2fsq_A 119 RDRLSTF----PTLPAFNMRVTGLR--P-----VGMVMKGATAEDDSIVALWRDTFAD---FFGYRH---PDHDTYEFHI 181 (243)
T ss_dssp HHHGGGC----CCCCCCCEEEEEEE--T-----TEEEEEESSHHHHHHHHHHHHHHHH---HHTCCC---TTGGGCCEEE
T ss_pred HHHHhcc----cCCCCeEEEEeccc--c-----ceEEEecCCHHHHHHHHHHHHHHHH---HhCCCC---CCCcceEEEE
Confidence 6543222 12379999999983 2 1355444442 24678777777766 568987 4788999999
Q ss_pred EeecccccccCCCCCCCCccccCcCCHHHHHHHhCCc---eeceEEeeEEEEEEee
Q psy2081 312 TLMNSKYRMRQNPSSDTNSEKRSTFNAKDILESLGDF---EFGETFVYCVHLSQRH 364 (380)
Q Consensus 312 TL~nt~~r~~~~~~~~~~~~~r~~fda~~il~~~~~~---~fG~~~v~~I~L~~s~ 364 (380)
||+ |..... . ..+.-....+++++... ..+.+.+..+.+|.-.
T Consensus 182 TLg---Y~~~~l--~-----~ee~~~~~~~l~~~~~~l~~~~p~i~l~~~efc~F~ 227 (243)
T 2fsq_A 182 TLS---YIVSWF--E-----PECLPRWQAMLDEELEKLRVAAPVIQMRPPAFCEFK 227 (243)
T ss_dssp ECE---EESSCB--C-----GGGHHHHHHHHHHHHHHHHHHCSSCCBCCCEEEEES
T ss_pred EEE---eccCCC--C-----HHHHHHHHHHHHHHHHHHHhhCCeeeecCcceEEeC
Confidence 998 755321 0 11111123334433221 2344677888888653
No 52
>3v69_A Protein filia; RNA-binding, embryogenesis, KH domain, RNA binding, P binding; 2.20A {Mus musculus}
Probab=97.67 E-value=4e-05 Score=64.77 Aligned_cols=69 Identities=19% Similarity=0.186 Sum_probs=59.4
Q ss_pred EEEEcCCCCcceeeCCCCchHHHHHHHhCceEEcCCCCCC--CcEEEeeCCHHHHHHHHHHHHHHhhhhccc
Q psy2081 93 YQCHIPKSFYPFIIGVKGSTKRRIESETNTQLSIPRQGQT--GDIIISSYSERGIASAKRRLDLLLVFARKK 162 (380)
Q Consensus 93 ~~v~Vp~~~~~~IIG~~G~t~k~ie~eT~~~I~ip~~~~~--~~i~I~g~~~~~v~~A~~~I~~iv~~~rkk 162 (380)
..+.|...+.+.|+|++|+.|+.||.-++|.|++.+-+.+ ..|+|.|+ ...-..|+..|..+.+-.|.|
T Consensus 58 lVF~vE~~lve~IFGp~Gs~Ip~IE~~SqTLIqV~~~~s~g~tEVtIfG~-~~~Q~rak~MI~sLA~~hr~~ 128 (140)
T 3v69_A 58 KRLYVEPRLLEIMFGKDGEHIPHLESMLHTLIHVNVWGPERRAEIWIFGP-PPFRRDVDRMLTDLAHYCRMK 128 (140)
T ss_dssp EEEEECGGGHHHHHCGGGTTHHHHHHHHTSEEEEECCCTTSCEEEEEESC-HHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEehhhhhcccCCCcCccchHHhhcceeEEEeccCCCCcEEEEEECC-HHHHHHHHHHHHHHHHHHHHH
Confidence 5688899999999999999999999999999999876554 47999996 787888888888888776644
No 53
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=97.08 E-value=8.2e-05 Score=79.45 Aligned_cols=65 Identities=23% Similarity=0.247 Sum_probs=0.0
Q ss_pred eEEEEEcCCCCcceeeCCCCchHHHHHHHhCceEEcCCCCCCCcEEEeeCCHHHHHHHHHHHHHHhhh
Q psy2081 91 YKYQCHIPKSFYPFIIGVKGSTKRRIESETNTQLSIPRQGQTGDIIISSYSERGIASAKRRLDLLLVF 158 (380)
Q Consensus 91 ~~~~v~Vp~~~~~~IIG~~G~t~k~ie~eT~~~I~ip~~~~~~~i~I~g~~~~~v~~A~~~I~~iv~~ 158 (380)
-..++.||++.++.+||++|.+++.|.++||+.|+|. ++|.|.|.+.+.+.+.+|+++|+.++.+
T Consensus 560 ~~~~~~i~~~ki~~~ig~gGk~I~~I~~~~G~~IdI~---~dg~v~I~~~~~~~~~~a~~~i~~i~~~ 624 (723)
T 3cdi_A 560 RIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIE---DDGTVKIAATDGEKAKHAIRRIEEITAE 624 (723)
T ss_dssp --------------------------------------------------------------------
T ss_pred eEEEEEECHHHhcccccccceeeeeeehhhCceEEec---CCccEEEecCCHHHHHHHHHHHHHHhhh
Confidence 3678899999999999999999999999999999995 4789999998889999999998887643
No 54
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=96.84 E-value=5.5e-05 Score=81.14 Aligned_cols=63 Identities=19% Similarity=0.277 Sum_probs=25.2
Q ss_pred eEEEEEcCCCCcceeeCCCCchHHHHHHHhCceEEcCCCCCCCcEEEeeCCHHHHHHHHHHHHHHh
Q psy2081 91 YKYQCHIPKSFYPFIIGVKGSTKRRIESETNTQLSIPRQGQTGDIIISSYSERGIASAKRRLDLLL 156 (380)
Q Consensus 91 ~~~~v~Vp~~~~~~IIG~~G~t~k~ie~eT~~~I~ip~~~~~~~i~I~g~~~~~v~~A~~~I~~iv 156 (380)
-..++.||++.++.+||++|.++|.|.++||+.|+|. .+|.|.|.+.+.....+|+++|+.++
T Consensus 598 ~~~~~~I~~~ki~~vIG~gGk~Ik~I~~~~G~~IdI~---~dG~v~Is~~~~~~~~~a~~~i~~i~ 660 (757)
T 1e3p_A 598 RIITVKIPVDKIGEVIGPKRQMINQIQEDTGAEITIE---DDGTIYIGAADGPAAEAARATINGIA 660 (757)
T ss_dssp BCCCC------------------CTTCCCCCSCC-----------CCCBSSHHHHCC---------
T ss_pred eeEEEEEChHHeehcccccceeeehhhHhhCCEEEec---CCceEEEecCCHHHHHHHHHHHHHhc
Confidence 3567899999999999999999999999999999995 47899999999999999988888765
No 55
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=86.71 E-value=0.99 Score=41.36 Aligned_cols=64 Identities=22% Similarity=0.201 Sum_probs=54.8
Q ss_pred EEEEcCCCCcceeeCCCCchHHHHHHHhCceEEcCCCCCCCcEEEeeCCHHHHHHHHHHHHHHhhhh
Q psy2081 93 YQCHIPKSFYPFIIGVKGSTKRRIESETNTQLSIPRQGQTGDIIISSYSERGIASAKRRLDLLLVFA 159 (380)
Q Consensus 93 ~~v~Vp~~~~~~IIG~~G~t~k~ie~eT~~~I~ip~~~~~~~i~I~g~~~~~v~~A~~~I~~iv~~~ 159 (380)
.-+.|++.+.+.++|++|..+..|.+.+++.|-+ |.+|-|.|.+.+...+..+..-|..+=.++
T Consensus 150 ~vv~vs~~~~~rl~~~~~~~l~~l~~~~~~~i~v---G~NG~IWi~~~~~~~~~~~~~ai~~~e~~~ 213 (235)
T 2z0s_A 150 KIVEISPAKVPRVIGRKMSMLKTLEEKTECKIFV---ARNGRIHLECPNEDLEAIAVMAIKIIDEEA 213 (235)
T ss_dssp EEEECCGGGSGGGTCGGGHHHHHHHHHHCCEEEE---ETTTEEEEECSCHHHHHHHHHHHHHHHHCS
T ss_pred EEEEECHHHhHHHhcCcchHHHHhcccCCeEEEE---eCCCEEEEecCCHHHHHHHHHHHHHHHhhh
Confidence 4568999999999999999999999999999999 679999999988888887777777664444
No 56
>2ja9_A Exosome complex exonuclease RRP40; RNA-binding protein, RNA, S1 domain, KH domain, hydrolase, RNA-binding, nuclear protein; 2.20A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.51.1.1
Probab=84.92 E-value=0.46 Score=41.77 Aligned_cols=58 Identities=12% Similarity=0.114 Sum_probs=50.0
Q ss_pred EEEcCCCCcceeeCCCCc-hHHHHHHHhCceEEcCCCCCCCcEEEeeCCHHHHHHHHHHHHH
Q psy2081 94 QCHIPKSFYPFIIGVKGS-TKRRIESETNTQLSIPRQGQTGDIIISSYSERGIASAKRRLDL 154 (380)
Q Consensus 94 ~v~Vp~~~~~~IIG~~G~-t~k~ie~eT~~~I~ip~~~~~~~i~I~g~~~~~v~~A~~~I~~ 154 (380)
-+.||..+.+.++|++|. .++.|.+.+++.|-+ |.+|-|.|.+.+...+..+...|..
T Consensus 94 l~~v~~~~v~rl~~~~~~~~l~~l~~~~~~ei~v---G~NG~IWi~~~~~~~~~~v~~aI~~ 152 (175)
T 2ja9_A 94 IIDVNLNFARQLLFNNDFPLLKVLAAHTKFEVAI---GLNGKIWVKCEELSNTLACYRTIME 152 (175)
T ss_dssp EEECCHHHHHHHHHCTTCCHHHHHHTTCCCEEEE---ETTTEEEEECSSHHHHHHHHHHHHH
T ss_pred EEEEcHHHhhHHhcCCCcchHHhhhccCCeEEEE---ECCcEEEEecCCHHHHHHHHHHHHH
Confidence 588999999999998888 999999999999999 7899999999877766666566665
No 57
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=84.62 E-value=1.5 Score=40.09 Aligned_cols=81 Identities=25% Similarity=0.321 Sum_probs=60.6
Q ss_pred EEEEcCCCCcceeeCCCCchHHHHHHHhCceEEcCCCCCCCcEEEeeCCHHHHHHHHHHHHHHhhhhcccCCcceeeecc
Q psy2081 93 YQCHIPKSFYPFIIGVKGSTKRRIESETNTQLSIPRQGQTGDIIISSYSERGIASAKRRLDLLLVFARKKIPYTHLLSIP 172 (380)
Q Consensus 93 ~~v~Vp~~~~~~IIG~~G~t~k~ie~eT~~~I~ip~~~~~~~i~I~g~~~~~v~~A~~~I~~iv~~~rkk~~~thFIaIp 172 (380)
.-+.|++.+.+.++|+++..+..|.+.+++.|-+ |.||-|.|.+. ......+...|..+=.+.-
T Consensus 138 ~v~~vs~~~v~rl~~~~~~~l~~l~~~~~~ei~v---G~NG~IWi~~~-~~~~~~~~~ai~~~e~~~~------------ 201 (229)
T 2ba0_A 138 RIVAINPARVPRVIGKKGSMIKLLKSELDVQIVV---GQNGLIWVNGD-RRKVSIAEEAIYLIEQEAH------------ 201 (229)
T ss_dssp EEEECCGGGHHHHHCGGGHHHHHHHHHHTCEEEE---CTTSEEEEESC-HHHHHHHHHHHHHHHHCSC------------
T ss_pred EEEEECHHHhHHHhcCCchHHHHhcccCCeEEEE---ECCcEEEEeCC-chhHHHHHHHHHHHHhhhh------------
Confidence 4568899999999999999999999999999999 78999999985 4456666666665543331
Q ss_pred CCChhHHHHHHHHHHHHhc
Q psy2081 173 MNVPNIQENFAKFKATVLS 191 (380)
Q Consensus 173 l~~~~I~~~~~~fq~~v~~ 191 (380)
...+.+.+.+|..+.+.
T Consensus 202 --~~~l~~~v~~~l~~~~~ 218 (229)
T 2ba0_A 202 --TEGLTDRVAEFIKRRKA 218 (229)
T ss_dssp --CSSHHHHHHHHHHHHHH
T ss_pred --hhhHHHHHHHHHHHhcc
Confidence 02566777776655544
No 58
>2cxc_A NUSA; transcription termination, RNA binding protein, archaeal NUS domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix} PDB: 2cy1_A
Probab=77.36 E-value=1 Score=38.32 Aligned_cols=36 Identities=8% Similarity=0.096 Sum_probs=33.2
Q ss_pred EEEEEcCCCCcceeeCCCCchHHHHHHHhCceEEcC
Q psy2081 92 KYQCHIPKSFYPFIIGVKGSTKRRIESETNTQLSIP 127 (380)
Q Consensus 92 ~~~v~Vp~~~~~~IIG~~G~t~k~ie~eT~~~I~ip 127 (380)
+..+-|++...|..||++|+.++.|++++|-+|+|=
T Consensus 37 r~i~vVk~g~vGa~IG~~G~ri~~i~~elgekIdIV 72 (144)
T 2cxc_A 37 RLIFLVSEGEAGRAIGRGGRLIKLLREALGKNIEVV 72 (144)
T ss_dssp EEEEEECTTCHHHHHCGGGHHHHHHHHHHSSEEEEE
T ss_pred EEEEEEeCCCccccCccCchHHHHHHHHhCCeeEEE
Confidence 777888888899999999999999999999999883
No 59
>2nn6_G Exosome complex exonuclease RRP40; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=74.21 E-value=0.68 Score=43.95 Aligned_cols=59 Identities=7% Similarity=0.069 Sum_probs=50.6
Q ss_pred EEEcCCCCcceeeCCCCchHHHHHHHhCceEEcCCCCCCCcEEEeeCCHHHHHHHHHHHHHH
Q psy2081 94 QCHIPKSFYPFIIGVKGSTKRRIESETNTQLSIPRQGQTGDIIISSYSERGIASAKRRLDLL 155 (380)
Q Consensus 94 ~v~Vp~~~~~~IIG~~G~t~k~ie~eT~~~I~ip~~~~~~~i~I~g~~~~~v~~A~~~I~~i 155 (380)
-+.||..+.+.++|+++..++.|.+.+++.|-+ |.||-|.|.+.+......+...|..+
T Consensus 213 l~~Vs~~lvrrl~~~~~~~l~~L~~~~~~eI~v---G~NG~IWI~~~~~~~~~~i~~aI~~~ 271 (289)
T 2nn6_G 213 LFKVTLGLIRKLLAPDCEIIQEVGKLYPLEIVF---GMNGRIWVKAKTIQQTLILANILEAC 271 (289)
T ss_dssp EECCCHHHHHHHHCTTCSHHHHTTCSSSCCCEE---ETTTEEEECCSSHHHHHHHHHHHHHT
T ss_pred EEEEChHHhhhhhcCchhHHHHhcccCCeEEEE---ECCcEEEEecCChhHHHHHHHHHHHh
Confidence 578999999999999999999998899999998 78999999998877766666666554
No 60
>2cxc_A NUSA; transcription termination, RNA binding protein, archaeal NUS domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix} PDB: 2cy1_A
Probab=70.75 E-value=0.86 Score=38.79 Aligned_cols=40 Identities=13% Similarity=0.143 Sum_probs=36.8
Q ss_pred CCceEEEEEcCCCCcceeeCCCCchHHHHHHHhCceEEcC
Q psy2081 88 DGQYKYQCHIPKSFYPFIIGVKGSTKRRIESETNTQLSIP 127 (380)
Q Consensus 88 ~g~~~~~v~Vp~~~~~~IIG~~G~t~k~ie~eT~~~I~ip 127 (380)
+|.-...+.||..-.+..||++|.++|-..+-||.+|+|-
T Consensus 100 ~~~~~~~V~V~~~q~slAIGk~G~NvrLa~~Ltg~~idI~ 139 (144)
T 2cxc_A 100 NGVKQVVIKVSEDDKGAAIGKGGKNVKRARLVLSKLFGVE 139 (144)
T ss_dssp TTEEEEEEEECTTTHHHHHCGGGHHHHHHHHHHHHHHCEE
T ss_pred CCcEEEEEEEChHHhhhccCCCCHHHHHHHHHhCCeeCce
Confidence 5667889999999999999999999999999999999884
No 61
>2je6_I RRP4, exosome complex RNA-binding protein 1; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1 PDB: 2jea_I* 2jeb_I* 3l7z_C
Probab=67.02 E-value=0.43 Score=44.37 Aligned_cols=60 Identities=15% Similarity=0.125 Sum_probs=41.3
Q ss_pred EEEEcCCCCcceeeCCCCchHHHHHHHhCceEEcCCCCCCCcEEEeeCCHHHHHHHHHHHHHH
Q psy2081 93 YQCHIPKSFYPFIIGVKGSTKRRIESETNTQLSIPRQGQTGDIIISSYSERGIASAKRRLDLL 155 (380)
Q Consensus 93 ~~v~Vp~~~~~~IIG~~G~t~k~ie~eT~~~I~ip~~~~~~~i~I~g~~~~~v~~A~~~I~~i 155 (380)
.-+.|++.+.+.++|++|..+..|.+.+++.|-+ |.+|-|.|.+.+...+..+..-|..+
T Consensus 157 ~v~~vs~~~v~rl~~~~~~~l~~l~~~~~~ei~v---G~NG~IWi~~~~~~~~~~~~~aI~~~ 216 (251)
T 2je6_I 157 IVIDIMPVKVPRVIGKNKSMYETLTSKSGCSIFV---ANNGRIWATCPSRFSEEILIEAIRKI 216 (251)
T ss_dssp CEEECCGGGHHHHHCGGGHHHHHHHTTC---CEE---CTTSEEEC-----CTTCCTHHHHTTT
T ss_pred EEEEECHHHhHHHhcCcchHHHHhcccCCeEEEE---ECCcEEEEeCCCHHHHHHHHHHHHHH
Confidence 4567888899999999999999999999999999 78999999987655555554444443
No 62
>2kqb_A Aprataxin and PNK-like factor; ADP-ribosylation, DNA damage, DNA repair, metal-binding, nucleotide-binding, nucleus, zinc, zinc-finger, lyase; NMR {Homo sapiens} PDB: 2kqc_A 2kqd_A* 2kqe_A*
Probab=53.07 E-value=1.9 Score=33.51 Aligned_cols=19 Identities=21% Similarity=0.399 Sum_probs=14.1
Q ss_pred EecCeeeeeCCCCCCcccC
Q psy2081 27 IIDGRRYRVNPSWPSTYED 45 (380)
Q Consensus 27 ~~~~r~yr~~~~~~~~~~~ 45 (380)
..|++|||+|+.+.+.+..
T Consensus 18 ~yG~~CYRkNp~H~~~fsH 36 (89)
T 2kqb_A 18 MYGANCYRKNPVHFQHFSH 36 (89)
T ss_dssp TTTTCCCCCCTTHHHHEEC
T ss_pred CCCcccccCChHHHhhccC
Confidence 4599999999997544333
No 63
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=49.03 E-value=6.8 Score=36.26 Aligned_cols=38 Identities=18% Similarity=0.217 Sum_probs=35.7
Q ss_pred eEEEEEcCCCCcceeeCCCCchHHHHHHHhCceEEcCC
Q psy2081 91 YKYQCHIPKSFYPFIIGVKGSTKRRIESETNTQLSIPR 128 (380)
Q Consensus 91 ~~~~v~Vp~~~~~~IIG~~G~t~k~ie~eT~~~I~ip~ 128 (380)
-...+.||..-.+.-|||+|.++|---.-||.+|+|-+
T Consensus 184 ~~a~V~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~~ 221 (251)
T 2asb_A 184 RAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRG 221 (251)
T ss_dssp TEEEEEECGGGHHHHHCGGGHHHHHHHHHHSCEEEEEE
T ss_pred cEEEEEEChHHhhhhhcCCcCcHHHHHHHHCCEecceE
Confidence 58899999999999999999999999999999999954
No 64
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=48.41 E-value=8.4 Score=37.29 Aligned_cols=45 Identities=16% Similarity=0.198 Sum_probs=38.7
Q ss_pred eeeccCCceEEEEEcCCCCcceeeCCCCchHHHHHHHhCceEEcC
Q psy2081 83 IYLGKDGQYKYQCHIPKSFYPFIIGVKGSTKRRIESETNTQLSIP 127 (380)
Q Consensus 83 i~~~~~g~~~~~v~Vp~~~~~~IIG~~G~t~k~ie~eT~~~I~ip 127 (380)
|...+.+.-...+.||..-.+.-|||+|.++|---.-||.+|+|-
T Consensus 295 v~~~d~~~~~~~v~v~~~~~s~AIGk~G~Nvrla~~Ltg~~idi~ 339 (344)
T 1hh2_P 295 VEILDKENKAARVLVPPTQLSLAIGKGGQNARLAAKLTGWKIDIK 339 (344)
T ss_dssp EEEEETTTTEEEEEECTTSHHHHHCGGGHHHHHHHHHHSCEEEEE
T ss_pred EEEEcCCCCEEEEEEChHHcchhhcCCCccHHHHHHHHCCEecee
Confidence 444234456899999999999999999999999999999999984
No 65
>1wh9_A 40S ribosomal protein S3; KH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ribosome; NMR {Homo sapiens} SCOP: d.52.3.1
Probab=43.47 E-value=5.3 Score=31.17 Aligned_cols=39 Identities=13% Similarity=0.215 Sum_probs=27.9
Q ss_pred ceeeccCCceEEEEEcCCCCcceeeCCCCchHHHHHHHhCce
Q psy2081 82 DIYLGKDGQYKYQCHIPKSFYPFIIGVKGSTKRRIESETNTQ 123 (380)
Q Consensus 82 ~i~~~~~g~~~~~v~Vp~~~~~~IIG~~G~t~k~ie~eT~~~ 123 (380)
+|+.+.+ .+.|.|-..+.+.|||++|+.+++|..+-.-.
T Consensus 29 eIeR~~~---~i~I~I~tarPg~vIGkkG~~Ie~L~~~l~k~ 67 (92)
T 1wh9_A 29 EVRVTPT---RTEIIILATRTQNVLGEKGRRIRELTAVVQKR 67 (92)
T ss_dssp EEEECSS---CEEEEEEESCHHHHHCGGGHHHHHHHHHHHHH
T ss_pred EEEECCC---eEEEEEEeCCCceEEcCCcHHHHHHHHHHHHH
Confidence 5666554 35556666778999999999888887764433
No 66
>1j26_A Immature colon carcinoma transcript 1; peptide chain release factors, RF-1, the GGQ motif, immature carcinoma transcript 1; NMR {Mus musculus} SCOP: d.50.4.1
Probab=42.34 E-value=10 Score=30.72 Aligned_cols=66 Identities=11% Similarity=0.281 Sum_probs=38.7
Q ss_pred eeeccCCceEEEEEcCCC-CcceeeCCCCchHHHHHHHhCceEEcCCCCCCCcEEEeeC----CHHHHHHHHHHHHHHhh
Q psy2081 83 IYLGKDGQYKYQCHIPKS-FYPFIIGVKGSTKRRIESETNTQLSIPRQGQTGDIIISSY----SERGIASAKRRLDLLLV 157 (380)
Q Consensus 83 i~~~~~g~~~~~v~Vp~~-~~~~IIG~~G~t~k~ie~eT~~~I~ip~~~~~~~i~I~g~----~~~~v~~A~~~I~~iv~ 157 (380)
|..+++. ..+.++||.. .+. -..+.+|.+..+-+|. .+|.|+|+.. ...+.+.|.+++..++.
T Consensus 37 VNKv~Sa-V~Lrf~i~t~~~Lp------~~~k~rl~~~~~~ri~-----~~G~ivv~~q~~RSQ~~Nr~~Al~rL~~~l~ 104 (112)
T 1j26_A 37 VNKVNSK-AEVRFHLASADWIE------EPVRQKIALTHKNKIN-----KAGELVLTSESSRYQFRNLAECLQKIRDMIA 104 (112)
T ss_dssp CSSCCCE-EEEEEEGGGCTTSC------HHHHHHHHHHTTTTBC-----SSSEEEEEECCCSSHHHHHHHHHHHHHHHHH
T ss_pred ccCCcce-EEEEEeccccccCC------HHHHHHHHHhhccccc-----cCCeEEEEECCccCHHHHHHHHHHHHHHHHH
Confidence 4443333 4555666652 111 1224445444444443 3577888873 46788999999999987
Q ss_pred hhc
Q psy2081 158 FAR 160 (380)
Q Consensus 158 ~~r 160 (380)
++.
T Consensus 105 ~a~ 107 (112)
T 1j26_A 105 EAS 107 (112)
T ss_dssp HHH
T ss_pred Hhh
Confidence 764
No 67
>2pt7_G HP1451, hypothetical protein; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori}
Probab=41.94 E-value=7.3 Score=33.28 Aligned_cols=34 Identities=15% Similarity=0.079 Sum_probs=28.3
Q ss_pred EEEEEcCCCCcceeeCCCCchHHHHHHHhCceEE
Q psy2081 92 KYQCHIPKSFYPFIIGVKGSTKRRIESETNTQLS 125 (380)
Q Consensus 92 ~~~v~Vp~~~~~~IIG~~G~t~k~ie~eT~~~I~ 125 (380)
++.+++..+--|.|||+.|.|+..|+--++--++
T Consensus 34 ~i~i~i~ged~glLIGK~G~TL~ALQyL~~~~vn 67 (152)
T 2pt7_G 34 VLLIDIDGEDSALLIGEKGYRYKALSYLLFNWIH 67 (152)
T ss_dssp EEEEEEEEGGGTTTTCGGGHHHHHHHHHHHHHHH
T ss_pred EEEEEEecCCcceEECCCCcchHHHHHHHHHHhh
Confidence 6777778899999999999999999988754443
No 68
>2kuo_A Aprataxin and PNK-like factor; aprataxin PNK-like factor (APLF), poly ADP-ribose (PAR), PAR zinc finger (PBZ), DNA damage, ADP-ribose; NMR {Homo sapiens}
Probab=41.60 E-value=1.7 Score=33.86 Aligned_cols=17 Identities=24% Similarity=0.434 Sum_probs=13.1
Q ss_pred EecCeeeeeCCCCCCcc
Q psy2081 27 IIDGRRYRVNPSWPSTY 43 (380)
Q Consensus 27 ~~~~r~yr~~~~~~~~~ 43 (380)
..|++|||+|+.+.+.+
T Consensus 23 ~yG~~CYRkNp~H~~~f 39 (91)
T 2kuo_A 23 MYGANCYRKNPVHFQHF 39 (91)
T ss_dssp TTGGGCSCCSHHHHHHE
T ss_pred CCCcccccCChHHHhhc
Confidence 34999999999875443
No 69
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=39.35 E-value=11 Score=36.66 Aligned_cols=39 Identities=18% Similarity=0.210 Sum_probs=36.2
Q ss_pred ceEEEEEcCCCCcceeeCCCCchHHHHHHHhCceEEcCC
Q psy2081 90 QYKYQCHIPKSFYPFIIGVKGSTKRRIESETNTQLSIPR 128 (380)
Q Consensus 90 ~~~~~v~Vp~~~~~~IIG~~G~t~k~ie~eT~~~I~ip~ 128 (380)
.-...+.||..-.+..|||+|.++|-.-.-||.+|+|-+
T Consensus 306 ~~~a~V~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~~ 344 (366)
T 1k0r_A 306 ARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRG 344 (366)
T ss_dssp TTEEEEEECGGGHHHHHCGGGHHHHHHHHHHCCEEEEEE
T ss_pred CcEEEEEEChHHhhhccCCCcHHHHHHHHHHCCeeeeeE
Confidence 468899999999999999999999999999999999954
No 70
>1jh6_A Cyclic phosphodiesterase; ADP-ribose 1'',2''-cyclic phosphate, RNA processing, 2',3'-C nucleotide phosphodiesterase, hydrolase; 1.80A {Arabidopsis thaliana} SCOP: d.61.1.1 PDB: 1fsi_A 1jh7_A*
Probab=38.58 E-value=55 Score=28.03 Aligned_cols=44 Identities=18% Similarity=0.172 Sum_probs=29.0
Q ss_pred CCCCCceeEEEEEecCC-hHHHHHHHHHHHHHHHHCCCccccccCCCceeeEEEee
Q psy2081 260 NDDPAEVDILYAKVVDD-SGLVQKLCDDVVQYFISQHLISKAYQKYDTVKMHVTLM 314 (380)
Q Consensus 260 ~ddp~~~rVLya~v~d~-~~~Lq~L~~~l~~~f~~~Gl~~~~~~e~r~fkpHiTL~ 314 (380)
-+.+...+-+||-+.+. .+.|+.+.+.+...+ +. .++.||+||+
T Consensus 2 ~~~~~~~~~f~~~pp~~~~~~l~~~~~~l~~~~---~~--------~~~~~HiTLl 46 (189)
T 1jh6_A 2 EEVKKDVYSVWALPDEESEPRFKKLMEALRSEF---TG--------PRFVPHVTVA 46 (189)
T ss_dssp CCCCCEEEEEEEEECTTTHHHHHHHHHHHHHHH---TC--------CCCCCCEEEE
T ss_pred CCCCCCcEEEEEECCHHHHHHHHHHHHHHHHHc---CC--------CCCCCEEEEe
Confidence 34566678888887422 467777777775533 22 2479999994
No 71
>3eik_A Tata-box-binding protein; DNA-binding, initiation factor, nucleus, transcription; 1.90A {Encephalitozoon cuniculi} PDB: 3oci_A 3oc3_C
Probab=38.23 E-value=31 Score=31.12 Aligned_cols=31 Identities=23% Similarity=0.311 Sum_probs=27.3
Q ss_pred CCCcEEEee-CCHHHHHHHHHHHHHHhhhhcc
Q psy2081 131 QTGDIIISS-YSERGIASAKRRLDLLLVFARK 161 (380)
Q Consensus 131 ~~~~i~I~g-~~~~~v~~A~~~I~~iv~~~rk 161 (380)
.+|.|+||| .+++.+..|.+.|..++.+.|+
T Consensus 186 ~SGKiviTGaks~~d~~~A~~~I~p~L~~frk 217 (218)
T 3eik_A 186 VSGKIVLTGAKVRDDIYQAFNNIYPVLIQHRK 217 (218)
T ss_dssp TTSEEEEEEESSHHHHHHHHHHHHHHHHHTBC
T ss_pred CCCeEEEEecCCHHHHHHHHHHHHHHHHHhhc
Confidence 368999999 5789999999999999988874
No 72
>2jva_A Peptidyl-tRNA hydrolase domain protein; GFT hydrolase, structural genomics, PSI-2, protein STRU initiative; NMR {Pseudomonas syringae PV}
Probab=37.84 E-value=27 Score=27.95 Aligned_cols=30 Identities=37% Similarity=0.400 Sum_probs=23.3
Q ss_pred CCcEEEeeC----CHHHHHHHHHHHHHHhhhhcc
Q psy2081 132 TGDIIISSY----SERGIASAKRRLDLLLVFARK 161 (380)
Q Consensus 132 ~~~i~I~g~----~~~~v~~A~~~I~~iv~~~rk 161 (380)
+|.|+|+.. ...+.+.|.+++..++.++..
T Consensus 67 ~G~ivv~~q~~RSQ~~Nr~~Al~rL~~~l~~a~~ 100 (108)
T 2jva_A 67 DGVIVLKAQQYRTQEQNRADALLRLSELIVNAAK 100 (108)
T ss_dssp TCEEEEEECCSSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCcCCHHHHHHHHHHHHHHHHHHHcc
Confidence 567888762 457889999999999987753
No 73
>3i0u_A Phosphothreonine lyase OSPF; APO-structure, type III effector, phospho lyase, secreted, virulence, structural genomics; 2.70A {Shigella flexneri}
Probab=34.64 E-value=1.2e+02 Score=26.86 Aligned_cols=76 Identities=12% Similarity=0.178 Sum_probs=49.2
Q ss_pred CCceeeEEeeccCCchhHHHHHHHHHhhcccccccccccCce-EEEecceecCCCCCCcee-------EEEEEec--CC-
Q psy2081 208 GRLHITMGMLMLADSVERDQAVEVLQKCGNNIILPILRSQRI-KINLKGLEIMNDDPAEVD-------ILYAKVV--DD- 276 (380)
Q Consensus 208 ~~LHLTL~~L~l~~~~ev~~A~~~L~~~~~~~i~~~~~~~pf-~l~l~Glg~F~ddp~~~r-------VLya~v~--d~- 276 (380)
.++||.+ ..++|..|-++|..+. .....|+ .-++..+..-. ...| .||+++. |.
T Consensus 80 DK~HiSV------~~~qv~~AF~ai~~LL------~SeDSPvDKWKVTDM~rv~---~qsRV~~GAQfTLY~Kpd~eds~ 144 (218)
T 3i0u_A 80 DKFHISI------AREQVPLAFQILSGLL------FSEDSPIDKWKITDMNRVS---QQSRVGIGAQFTLYVKSDQECSQ 144 (218)
T ss_dssp EEEEECB------CGGGHHHHHHHHHHHH------TCTTCSCSEEEEECTTTCC-------CCSSCCEEEEEECCSSTTC
T ss_pred ceEEEEe------cHHHHHHHHHHHHHHh------cCCCCCcceeeecccccCc---chhhhcccceEEEEecCcccccc
Confidence 5889864 6889999999998873 1123443 33444333322 2233 5999998 22
Q ss_pred -----hHHHHHHHHHHHHHHHHCCCcc
Q psy2081 277 -----SGLVQKLCDDVVQYFISQHLIS 298 (380)
Q Consensus 277 -----~~~Lq~L~~~l~~~f~~~Gl~~ 298 (380)
..+...+-..|+..|.++|+..
T Consensus 145 Ys~~~l~k~r~fi~~iE~~L~~agi~p 171 (218)
T 3i0u_A 145 YSALLLHKIRQFIMCLESNLLRSKIAP 171 (218)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHTTCCB
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 1456777888999999999996
No 74
>1ytb_A Protein (tata binding protein (TBP)); protein-DNA complex, transcription/DNA complex; HET: DNA; 1.80A {Saccharomyces cerevisiae} SCOP: d.129.1.1 d.129.1.1 PDB: 1ngm_A* 1tba_B 1nh2_A* 1ytf_A* 1tbp_A 1qna_A* 1qn3_A* 1qn5_A* 1qn6_A* 1qn7_A* 1qn8_A* 1qn9_A* 1qn4_A* 1qnb_A* 1qnc_A* 1qne_A* 1vok_A 1vol_B* 1vto_A* 1vtl_E* ...
Probab=33.96 E-value=41 Score=29.31 Aligned_cols=31 Identities=23% Similarity=0.239 Sum_probs=26.6
Q ss_pred CCCcEEEee-CCHHHHHHHHHHHHHHhhhhcc
Q psy2081 131 QTGDIIISS-YSERGIASAKRRLDLLLVFARK 161 (380)
Q Consensus 131 ~~~~i~I~g-~~~~~v~~A~~~I~~iv~~~rk 161 (380)
.+|.|+||| .+++.+.+|.+.|..++.+.++
T Consensus 148 ~SGkivitGak~~~~~~~a~~~i~p~L~~~~~ 179 (180)
T 1ytb_A 148 VSGKIVLTGAKQREEIYQAFEAIYPVLSEFRK 179 (180)
T ss_dssp TTSEEEEEEESSHHHHHHHHHHHHHHHHHTBC
T ss_pred cCCeEEEEecCCHHHHHHHHHHHHHHHHHHhc
Confidence 358999999 4889999999999999887764
No 75
>1go3_E DNA-directed RNA polymerase subunit E; transferase, transferase, transcription; 1.75A {Methanococcus jannaschii} SCOP: b.40.4.5 d.230.1.1
Probab=32.33 E-value=22 Score=30.70 Aligned_cols=42 Identities=10% Similarity=0.112 Sum_probs=31.9
Q ss_pred eEEEEEcCCCCcceeeCCCCchHHHH-HHHh--------Cc---eEEcCCCCCCCcEEEe
Q psy2081 91 YKYQCHIPKSFYPFIIGVKGSTKRRI-ESET--------NT---QLSIPRQGQTGDIIIS 138 (380)
Q Consensus 91 ~~~~v~Vp~~~~~~IIG~~G~t~k~i-e~eT--------~~---~I~ip~~~~~~~i~I~ 138 (380)
...++.||++.++.+|| .+++++ .++| |+ .|+|- +.+++.|.
T Consensus 7 l~~~i~I~P~~~~~~i~---~~I~~~L~~~~~gk~~~~~G~~i~~idi~---~~g~~~I~ 60 (187)
T 1go3_E 7 IADVVKVPPEEFGKDLK---ETVKKILMEKYEGRLDKDVGFVLSIVDVK---DIGEGKVV 60 (187)
T ss_dssp EEEEEEECGGGTTSCHH---HHHHHHHHHHHTTCEETTTEEEEEEEEEE---EECCCBCC
T ss_pred EEEEEEECHHHhCccHH---HHHHHHHHHHhCCeEcCCccEEEEEEEEe---eccCCEEe
Confidence 45689999999999999 689995 9999 88 56664 23444444
No 76
>4dh9_Y YAEJ; ribosome, YAEJ, ribosome stalling, ribosome rescue, rescue F alternative rescue factor, ARFB, release factor, rescue of ribosomes; 3.20A {Escherichia coli} PDB: 2jy9_A
Probab=32.15 E-value=45 Score=27.89 Aligned_cols=56 Identities=21% Similarity=0.273 Sum_probs=36.9
Q ss_pred CCCCchHHHHHHHhCceEE-------cCC-------------CCCCCcEEEeeC----CHHHHHHHHHHHHHHhhhhccc
Q psy2081 107 GVKGSTKRRIESETNTQLS-------IPR-------------QGQTGDIIISSY----SERGIASAKRRLDLLLVFARKK 162 (380)
Q Consensus 107 G~~G~t~k~ie~eT~~~I~-------ip~-------------~~~~~~i~I~g~----~~~~v~~A~~~I~~iv~~~rkk 162 (380)
|+||....+. +|.+++. ||. -..+|.|+|+.. ...+-+.|.+++..++.++...
T Consensus 24 GpGGQnVNKv--~SaV~L~~~~~~s~lp~~~k~rL~~~~~~rit~~G~ivv~~q~~RSQ~~Nr~~A~~rL~~~l~~a~~~ 101 (140)
T 4dh9_Y 24 GAGGQHVNKT--STAIHLRFDIRASSLPEYYKERLLAASHHLISSDGVIVIKAQEYRSQELNREAALARLVAMIKELTTE 101 (140)
T ss_dssp SSSSHHHHTT--CCCEEEEECCSSSSSCSHHHHHHHSCCCTTSCSSCCCCEEECCCSSHHHHHHHHHHHHHHHHHHHHSC
T ss_pred CCCCCccccc--cceEEEEEecccccCCHHHHHHHHHHhccccccCCcEEEEEcCCcCHHHHHHHHHHHHHHHHHHhccC
Confidence 7777777753 5566665 442 012466777763 4578899999999999887644
Q ss_pred CC
Q psy2081 163 IP 164 (380)
Q Consensus 163 ~~ 164 (380)
..
T Consensus 102 pk 103 (140)
T 4dh9_Y 102 KK 103 (140)
T ss_dssp CC
T ss_pred CC
Confidence 33
No 77
>2o5a_A BH1328 protein; BHR21, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.70A {Bacillus halodurans} SCOP: d.218.1.12
Probab=29.32 E-value=2.3e+02 Score=23.00 Aligned_cols=62 Identities=18% Similarity=0.190 Sum_probs=41.7
Q ss_pred hhHHHHHHHHHhhcccccccccccCceEEEecceecCCCCCCceeEEEEEecCChHHHHHHHHHHHHHHHHCCCcc
Q psy2081 223 VERDQAVEVLQKCGNNIILPILRSQRIKINLKGLEIMNDDPAEVDILYAKVVDDSGLVQKLCDDVVQYFISQHLIS 298 (380)
Q Consensus 223 ~ev~~A~~~L~~~~~~~i~~~~~~~pf~l~l~Glg~F~ddp~~~rVLya~v~d~~~~Lq~L~~~l~~~f~~~Gl~~ 298 (380)
+-++.+.++|.+-+ +..-..|.++|+..+-| -.+-|.-. +...++.+++.|.+.+.+.|..+
T Consensus 5 ~l~~~i~~al~dkK--------a~DI~vlDv~~~s~~~D-----yfVIatg~-S~rqv~Aiad~v~~~lk~~g~~~ 66 (125)
T 2o5a_A 5 ELLQLAVNAVDDKK--------AEQVVALNMKGISLIAD-----FFLICHGN-SEKQVQAIAHELKKVAQEQGIEI 66 (125)
T ss_dssp HHHHHHHHHHHHTT--------CEEEEEEECBTTBC--C-----EEEEEEES-SHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHcC--------CCCeEEEEcCCCCcccC-----EEEEEEcC-CHHHHHHHHHHHHHHHHHcCCcc
Confidence 34566677776654 23445788899888875 22222222 46889999999999999999875
No 78
>3bo6_A Hydrophilic protein, VIRA protein; alpha/beta fold of phosphothreonine lyase; 1.40A {Chromobacterium violaceum} PDB: 2z8n_A 2z8m_A 2z8o_A* 2z8p_A* 2q8y_A*
Probab=27.33 E-value=1.2e+02 Score=26.92 Aligned_cols=79 Identities=15% Similarity=0.169 Sum_probs=50.9
Q ss_pred CCceeeEEeeccCCchhHHHHHHHHHhhcccccccccccCce-EEEecceecCCC----CCCceeEEEEEec--CC----
Q psy2081 208 GRLHITMGMLMLADSVERDQAVEVLQKCGNNIILPILRSQRI-KINLKGLEIMND----DPAEVDILYAKVV--DD---- 276 (380)
Q Consensus 208 ~~LHLTL~~L~l~~~~ev~~A~~~L~~~~~~~i~~~~~~~pf-~l~l~Glg~F~d----dp~~~rVLya~v~--d~---- 276 (380)
.++||.+ ..++|..|-++|..+. .....|+ +-++..+..-.. .-++-=.||+++. |.
T Consensus 82 DKfHiSV------~~~qv~~AF~al~~LL------~SeDSPvDKWKVTDM~rv~~qsRV~~GAQfTLY~Kpd~edsqYs~ 149 (220)
T 3bo6_A 82 DKFHISV------QREQVPQAFQALSGLL------FSVDSPIDKWKVTDMERVDQQSRVAVGAQFTLYVKPDQENSQYSA 149 (220)
T ss_dssp EEEEECB------CGGGHHHHHHHHHHHH------TCTTCSCSEEEEECTTTBCTTSTTTSSCCEEEECCCSSTTSCCCH
T ss_pred ceEEEEe------cHHHHHHHHHHHHHhh------cCCCCCcceeeeccccccchhhhhcccceEEEEecCccccccCCH
Confidence 6899964 6889999999998873 1223444 344443333221 0112235999997 22
Q ss_pred --hHHHHHHHHHHHHHHHHCCCcc
Q psy2081 277 --SGLVQKLCDDVVQYFISQHLIS 298 (380)
Q Consensus 277 --~~~Lq~L~~~l~~~f~~~Gl~~ 298 (380)
..+...+-..|+..|.++|+..
T Consensus 150 ~~l~k~r~fi~~lE~~L~~aGi~p 173 (220)
T 3bo6_A 150 SSLHNTRQFIECLESRLSESGLMP 173 (220)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCB
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCC
Confidence 1456777888999999999986
No 79
>1rm1_A Tata-box binding protein; yeast TFIIA, TBP protein, ATA-box DNA, transcription/DNA complex; 2.50A {Saccharomyces cerevisiae} SCOP: d.129.1.1 d.129.1.1
Probab=25.96 E-value=67 Score=29.32 Aligned_cols=31 Identities=23% Similarity=0.239 Sum_probs=26.5
Q ss_pred CCCcEEEee-CCHHHHHHHHHHHHHHhhhhcc
Q psy2081 131 QTGDIIISS-YSERGIASAKRRLDLLLVFARK 161 (380)
Q Consensus 131 ~~~~i~I~g-~~~~~v~~A~~~I~~iv~~~rk 161 (380)
.+|.|+||| .+++.+..|.+.|..++.+.++
T Consensus 208 ~SGKIviTGaK~~~~~~~Ai~~i~p~L~~~~~ 239 (240)
T 1rm1_A 208 VSGKIVLTGAKQREEIYQAFEAIYPVLSEFRK 239 (240)
T ss_dssp TTSEEEEEEESSHHHHHHHHHHHHHHHHHTBC
T ss_pred cCCEEEEEecCCHHHHHHHHHHHHHHHHHhcc
Confidence 358999999 4889999999999999887764
No 80
>3u5c_D RP13, YS3, 40S ribosomal protein S3; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_B 3o30_C 3o2z_C 3u5g_D 1s1h_C 3jyv_C*
Probab=25.45 E-value=18 Score=33.12 Aligned_cols=43 Identities=7% Similarity=0.103 Sum_probs=31.1
Q ss_pred ceeeccCCceEEEEEcCCCCcceeeCCCCchHHHHHHHhCceEEcC
Q psy2081 82 DIYLGKDGQYKYQCHIPKSFYPFIIGVKGSTKRRIESETNTQLSIP 127 (380)
Q Consensus 82 ~i~~~~~g~~~~~v~Vp~~~~~~IIG~~G~t~k~ie~eT~~~I~ip 127 (380)
+|+.+.++ +.|.|-..+-+.|||++|+.+++|..+-.-.+.++
T Consensus 38 eI~Rt~~~---i~I~I~t~rPg~VIGkkG~~I~~L~~~l~k~~~~~ 80 (240)
T 3u5c_D 38 EVRVTPTK---TEVIIRATRTQDVLGENGRRINELTLLVQKRFKYA 80 (240)
T ss_dssp EEEECSSC---EEEEEEESCHHHHHTTTTCTHHHHHHHHHHHHTCC
T ss_pred EEEEcCCe---EEEEEEeCCCceEEcCCchhHHHHHHHHHHHhCCC
Confidence 56666554 45555567789999999999999887766555443
No 81
>2id1_A Hypothetical protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 3.00A {Chromobacterium violaceum} SCOP: d.218.1.12
Probab=24.47 E-value=2.8e+02 Score=22.70 Aligned_cols=61 Identities=16% Similarity=0.159 Sum_probs=42.2
Q ss_pred hHHHHHHHHHhhcccccccccccCceEEEecceecCCCCCCceeEEEEEecCChHHHHHHHHHHHHHHHHCCCcc
Q psy2081 224 ERDQAVEVLQKCGNNIILPILRSQRIKINLKGLEIMNDDPAEVDILYAKVVDDSGLVQKLCDDVVQYFISQHLIS 298 (380)
Q Consensus 224 ev~~A~~~L~~~~~~~i~~~~~~~pf~l~l~Glg~F~ddp~~~rVLya~v~d~~~~Lq~L~~~l~~~f~~~Gl~~ 298 (380)
-++.+.++|.+-+ ...-..|.++|+..+-| -.+-+.- .+...++.+++.|.+.+.+.|+.+
T Consensus 6 l~~~i~~al~dkK--------a~DI~vlDv~~~s~~~D-----yfVIaTg-~S~rqv~Aiad~v~~~lk~~g~~~ 66 (130)
T 2id1_A 6 ISKLAIEALEDIK--------GKDIIELDTSKLTSLFQ-----RMIVATG-DSNRQVKALANSVQVKLKEAGVDI 66 (130)
T ss_dssp HHHHHHHHHHHTT--------CEEEEEEEGGGTCSSCS-----EEEEEEC-SSHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHcC--------CCCeEEEEcCCCCcccC-----EEEEEEc-CCHHHHHHHHHHHHHHHHHcCCcC
Confidence 3556666666653 23445788899988885 2222222 246889999999999999999865
No 82
>2z8u_A Tata-box-binding protein; transcription, DNA-binding protein, transcription factor, transcription regulation; 1.90A {Methanococcus jannaschii}
Probab=24.12 E-value=70 Score=28.00 Aligned_cols=30 Identities=17% Similarity=0.253 Sum_probs=25.6
Q ss_pred CCCcEEEeeC-CHHHHHHHHHHHHHHhhhhc
Q psy2081 131 QTGDIIISSY-SERGIASAKRRLDLLLVFAR 160 (380)
Q Consensus 131 ~~~~i~I~g~-~~~~v~~A~~~I~~iv~~~r 160 (380)
.+|.|+|||. +.+.+..|.+.|..++.+.+
T Consensus 156 ~SGKiviTGaks~~~~~~A~~~i~~~L~~~~ 186 (188)
T 2z8u_A 156 GSGKVVITGLKSEEDAKRALKKILDTIKEVQ 186 (188)
T ss_dssp TTSEEEEESCSCHHHHHHHHHHHHHHHHHHC
T ss_pred CCCEEEEEecCCHHHHHHHHHHHHHHHHHhc
Confidence 3689999994 88999999999988887764
No 83
>2fsq_A ATU0111 protein; alpha-beta barrel, structural genomics, PSI, protein structu initiative, midwest center for structural genomics; HET: MSE; 1.40A {Agrobacterium tumefaciens str} SCOP: d.61.1.4
Probab=23.75 E-value=89 Score=28.51 Aligned_cols=56 Identities=14% Similarity=0.108 Sum_probs=38.1
Q ss_pred hhHHHHHHHHHHHHhcccCcCCCCccccccCCCCceeeEEeeccC-CchhHHHHHHHHHhhc
Q psy2081 176 PNIQENFAKFKATVLSDFSRCRGIEESLFQEPGRLHITMGMLMLA-DSVERDQAVEVLQKCG 236 (380)
Q Consensus 176 ~~I~~~~~~fq~~v~~~~~~~~gi~~~~fv~p~~LHLTL~~L~l~-~~~ev~~A~~~L~~~~ 236 (380)
++-.+.+..+++.+.+.. |+... ....-.+|+||+.+..+ ++++......+|+++.
T Consensus 150 e~~~~~L~~~R~~l~q~l----Gi~~p-~hd~y~fHITLgY~~~~l~~ee~~~~~~~l~~~~ 206 (243)
T 2fsq_A 150 AEDDSIVALWRDTFADFF----GYRHP-DHDTYEFHITLSYIVSWFEPECLPRWQAMLDEEL 206 (243)
T ss_dssp HHHHHHHHHHHHHHHHHH----TCCCT-TGGGCCEEEECEEESSCBCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh----CCCCC-CCcceEEEEEEEeccCCCCHHHHHHHHHHHHHHH
Confidence 455788888888887754 33211 13356899999999864 6666776667777764
No 84
>3j21_F 50S ribosomal protein L6P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=23.51 E-value=95 Score=27.07 Aligned_cols=44 Identities=7% Similarity=0.125 Sum_probs=31.5
Q ss_pred hCceEEcCCCCCCCcEEEeeCCHHHHHHHHHHHHHHhhhhcccCCcceee
Q psy2081 120 TNTQLSIPRQGQTGDIIISSYSERGIASAKRRLDLLLVFARKKIPYTHLL 169 (380)
Q Consensus 120 T~~~I~ip~~~~~~~i~I~g~~~~~v~~A~~~I~~iv~~~rkk~~~thFI 169 (380)
.|+.+.+|+ .+|+|+|.+++.|-.....|+.... .+.| .+|.|+
T Consensus 126 ~gv~v~v~~----~~Iil~G~Dke~Vgq~AA~Ir~~~~-vK~K-DiR~F~ 169 (184)
T 3j21_F 126 PGVTVKVRG----QEIIVEGIDKEAVGQTAANIEQATR-ITKW-DRRIFQ 169 (184)
T ss_dssp TTEEEEEET----TEEEEEESCHHHHHHHHHHHHHHHC-CCSS-CSSSCC
T ss_pred CCeEEEecC----CEEEEEECCHHHHHHHHHHHhhccc-cCCC-cccEee
Confidence 355555553 3899999999999999999998875 3323 445553
No 85
>3tdq_A PILY2 protein; fimbiria, cell adhesion, structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.10A {Pseudomonas aeruginosa}
Probab=23.24 E-value=42 Score=25.93 Aligned_cols=16 Identities=38% Similarity=0.524 Sum_probs=12.7
Q ss_pred eeEEecCeeeee-CCCC
Q psy2081 24 KIEIIDGRRYRV-NPSW 39 (380)
Q Consensus 24 ~~~~~~~r~yr~-~~~~ 39 (380)
.||-|||+.||+ |.+.
T Consensus 21 ~lV~IDgq~YrLPN~v~ 37 (98)
T 3tdq_A 21 NLVDIDHRLYRLPNSTV 37 (98)
T ss_dssp TEEEETTEEEECCTTCE
T ss_pred ceEEEcCcEEeCCcccc
Confidence 588999999999 4443
No 86
>1otg_A 5-carboxymethyl-2-hydroxymuconate isomerase; 2.10A {Escherichia coli} SCOP: d.80.1.2
Probab=22.52 E-value=63 Score=26.04 Aligned_cols=28 Identities=25% Similarity=0.116 Sum_probs=22.7
Q ss_pred CceeeEEeeccCCchhHHHHHHHHHhhc
Q psy2081 209 RLHITMGMLMLADSVERDQAVEVLQKCG 236 (380)
Q Consensus 209 ~LHLTL~~L~l~~~~ev~~A~~~L~~~~ 236 (380)
-.|+|+.++.+-++++.+++.+.+-+..
T Consensus 60 fvhi~i~i~~GRs~eqK~~L~~~v~~~l 87 (125)
T 1otg_A 60 FVHMTLKIGAGRSLESRQQAGEMLFELI 87 (125)
T ss_dssp EEEEEEEECTTCCHHHHHHHHHHHHHHH
T ss_pred eEEEEEEECCCCCHHHHHHHHHHHHHHH
Confidence 4899999999888888887777766653
No 87
>2i3e_A G-rich; rich protein, CNP, 2',3'-cyclic-nucleotide 3'- phosphodiesterase, nerve regeneration, hydrolase; NMR {Carassius auratus}
Probab=21.69 E-value=77 Score=28.25 Aligned_cols=80 Identities=19% Similarity=0.280 Sum_probs=47.1
Q ss_pred hHHHHHHHHHHHHhcccCcCCCCccccccCCCCceeeEEeeccCCchhHHHHHHHHHhhcccccccccccCceEEEecce
Q psy2081 177 NIQENFAKFKATVLSDFSRCRGIEESLFQEPGRLHITMGMLMLADSVERDQAVEVLQKCGNNIILPILRSQRIKINLKGL 256 (380)
Q Consensus 177 ~I~~~~~~fq~~v~~~~~~~~gi~~~~fv~p~~LHLTL~~L~l~~~~ev~~A~~~L~~~~~~~i~~~~~~~pf~l~l~Gl 256 (380)
.+++.+..|-.+-.... .....|.+|.-+|.|=.|..- ....=++.-... +.+++.. ++.|+|++.|+
T Consensus 38 aFkk~~~~f~~e~~~~~-----dL~~yf~~pg~lHCTtkfcdy-Gka~GAeeYa~~-----~vVk~sy-gk~ftL~i~~l 105 (222)
T 2i3e_A 38 AFKEHISEFTGEAEKEV-----DLEQYFQNPLQLHCTTKFCDY-GKAEGAKEYAEL-----QVVKESL-TKSYELSVTAL 105 (222)
T ss_dssp HHHHTHHHHHTTCSSSS-----THHHHSBCCSSCEEEEEECCS-SSCHHHHHHHTC-----HHHHHGG-GCEEEEEEEEE
T ss_pred HHHHHHHhcccccchhh-----hHHHhcCCCCCceeeeeeccc-CCCcchHHHHHH-----HHHHHhh-cceeEEEEEEE
Confidence 56666666643332221 335678899999999988754 322222111111 1222222 57899999998
Q ss_pred ecCCCCCCceeEEEEEec
Q psy2081 257 EIMNDDPAEVDILYAKVV 274 (380)
Q Consensus 257 g~F~ddp~~~rVLya~v~ 274 (380)
=+-| |..=|.|+
T Consensus 106 ~vTp------rT~GARV~ 117 (222)
T 2i3e_A 106 IVTP------RTFGARVA 117 (222)
T ss_dssp EECS------SEEEEEEE
T ss_pred Eecc------cccceEEE
Confidence 6654 77888887
No 88
>1ytb_A Protein (tata binding protein (TBP)); protein-DNA complex, transcription/DNA complex; HET: DNA; 1.80A {Saccharomyces cerevisiae} SCOP: d.129.1.1 d.129.1.1 PDB: 1ngm_A* 1tba_B 1nh2_A* 1ytf_A* 1tbp_A 1qna_A* 1qn3_A* 1qn5_A* 1qn6_A* 1qn7_A* 1qn8_A* 1qn9_A* 1qn4_A* 1qnb_A* 1qnc_A* 1qne_A* 1vok_A 1vol_B* 1vto_A* 1vtl_E* ...
Probab=21.49 E-value=1.2e+02 Score=26.31 Aligned_cols=38 Identities=18% Similarity=0.191 Sum_probs=29.4
Q ss_pred CceEEcCCCCCCCcEEEee-CCHHHHHHHHHHHHHHhhhhcc
Q psy2081 121 NTQLSIPRQGQTGDIIISS-YSERGIASAKRRLDLLLVFARK 161 (380)
Q Consensus 121 ~~~I~ip~~~~~~~i~I~g-~~~~~v~~A~~~I~~iv~~~rk 161 (380)
++.+-|= .+|.|++|| .+.+.+..|.++|..++.+...
T Consensus 50 k~~~lIF---~SGKiv~TGaks~e~~~~a~~~i~~~L~~lg~ 88 (180)
T 1ytb_A 50 KTTALIF---ASGKMVVTGAKSEDDSKLASRKYARIIQKIGF 88 (180)
T ss_dssp TEEEEEC---TTSEEEEEEESSHHHHHHHHHHHHHHHHHHTC
T ss_pred cEEEEEE---CCCeEEEEecCCHHHHHHHHHHHHHHHHHcCC
Confidence 4455553 468999999 6899999999998888877653
No 89
>2xzm_C KH domain containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_C
Probab=21.15 E-value=32 Score=31.60 Aligned_cols=42 Identities=12% Similarity=0.193 Sum_probs=30.3
Q ss_pred ceeeccCCceEEEEEcCCCCcceeeCCCCchHHHHHHHhCceEEc
Q psy2081 82 DIYLGKDGQYKYQCHIPKSFYPFIIGVKGSTKRRIESETNTQLSI 126 (380)
Q Consensus 82 ~i~~~~~g~~~~~v~Vp~~~~~~IIG~~G~t~k~ie~eT~~~I~i 126 (380)
+|+.+.++ +.|.|-....+.|||++|+.+++|..+-.-...+
T Consensus 41 eI~r~~~~---i~I~I~tarPg~vIGkkG~~I~~L~~~L~k~~~~ 82 (243)
T 2xzm_C 41 EVRRTPTK---TEIRIKATKPQQVIGVEGKKHKELTQFLQKRFGY 82 (243)
T ss_dssp CCEECSSC---EEEEEEESCHHHHHCSSSHHHHHHHHHHHHHHCC
T ss_pred EEEECCCe---EEEEEEcCCCceEECCCchHHHHHHHHHHHHhCc
Confidence 66766654 4555555778999999999999988875554444
No 90
>3j20_C 30S ribosomal protein S3P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=20.97 E-value=29 Score=31.17 Aligned_cols=39 Identities=23% Similarity=0.198 Sum_probs=26.7
Q ss_pred ceeeccCCceEEEEEcCCCCcceeeCCCCchHHHHHHHhCce
Q psy2081 82 DIYLGKDGQYKYQCHIPKSFYPFIIGVKGSTKRRIESETNTQ 123 (380)
Q Consensus 82 ~i~~~~~g~~~~~v~Vp~~~~~~IIG~~G~t~k~ie~eT~~~ 123 (380)
+|+.+.++ +.+.|-..+-+.|||++|+.+++|..+-.-.
T Consensus 34 eI~r~~~~---~~I~I~t~rPg~vIG~~G~~I~~L~~~l~k~ 72 (210)
T 3j20_C 34 DIKKTPLG---TKVIIFAANPGYVIGRGGRRIRELTRILEKQ 72 (210)
T ss_dssp EEECCSSC---CEEEEEESCHHHHHCSSSHHHHHHHHHHHHH
T ss_pred EEEECCCe---EEEEEEeCCCceEEcCCchhHHHHHHHHHHH
Confidence 55555544 4444445678899999999999887664433
Done!