RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2081
(380 letters)
>d2ctea1 d.51.1.1 (A:8-88) Vigilin {Human (Homo sapiens) [TaxId:
9606]}
Length = 81
Score = 54.7 bits (132), Expect = 2e-10
Identities = 21/75 (28%), Positives = 35/75 (46%)
Query: 82 DIYLGKDGQYKYQCHIPKSFYPFIIGVKGSTKRRIESETNTQLSIPRQGQTGDIIISSYS 141
DI Q IPK + F+IG G + +E +T T++ IPR + I + +
Sbjct: 1 DIVARLQTQASATVAIPKEHHRFVIGKNGEKLQDLELKTATKIQIPRPDDPSNQIKITGT 60
Query: 142 ERGIASAKRRLDLLL 156
+ GI A+ + L+
Sbjct: 61 KEGIEKARHEVLLIS 75
>d1viga_ d.51.1.1 (A:) Vigilin {Human (Homo sapiens) [TaxId: 9606]}
Length = 71
Score = 53.6 bits (129), Expect = 3e-10
Identities = 16/62 (25%), Positives = 29/62 (46%)
Query: 94 QCHIPKSFYPFIIGVKGSTKRRIESETNTQLSIPRQGQTGDIIISSYSERGIASAKRRLD 153
+ +I F+ +IG G+ RI+ + + IP + ++I +G+ AKR L
Sbjct: 8 EINIDHKFHRHLIGKSGANINRIKDQYKVSVRIPPDSEKSNLIRIEGDPQGVQQAKRELL 67
Query: 154 LL 155
L
Sbjct: 68 EL 69
>d2ctka1 d.51.1.1 (A:8-98) Vigilin {Human (Homo sapiens) [TaxId:
9606]}
Length = 91
Score = 54.1 bits (130), Expect = 4e-10
Identities = 15/63 (23%), Positives = 27/63 (42%)
Query: 94 QCHIPKSFYPFIIGVKGSTKRRIESETNTQLSIPRQGQTGDIIISSYSERGIASAKRRLD 153
+ +P + ++IG KGS R++ E + +P DII + + AK L
Sbjct: 13 EVEVPFDLHRYVIGQKGSGIRKMMDEFEVNIHVPAPELQSDIIAITGLAANLDRAKAGLL 72
Query: 154 LLL 156
+
Sbjct: 73 ERV 75
>d2ctma1 d.51.1.1 (A:8-88) Vigilin {Human (Homo sapiens) [TaxId:
9606]}
Length = 81
Score = 50.2 bits (120), Expect = 6e-09
Identities = 11/70 (15%), Positives = 23/70 (32%), Gaps = 1/70 (1%)
Query: 88 DGQYKYQCHIPKSFYPFIIGVKGSTKRRIESETNTQLSIPRQGQTG-DIIISSYSERGIA 146
+ + + IIG +G R+I E + P+ G + + + +
Sbjct: 7 EQMVSEDVPLDHRVHARIIGARGKAIRKIMDEFKVDIRFPQSGAPDPNCVTVTGLPENVE 66
Query: 147 SAKRRLDLLL 156
A + L
Sbjct: 67 EAIDHILNLE 76
>d2ctla1 d.51.1.1 (A:8-91) Vigilin {Human (Homo sapiens) [TaxId:
9606]}
Length = 84
Score = 47.9 bits (114), Expect = 4e-08
Identities = 14/73 (19%), Positives = 30/73 (41%), Gaps = 3/73 (4%)
Query: 87 KDGQYKYQCHIPKSFYPFIIGVKGSTKRRIESETNTQLSIPRQGQTG---DIIISSYSER 143
+K + ++P IIG KG+ +I E + + P + D I + E+
Sbjct: 6 ALRSFKLSVTVDPKYHPKIIGRKGAVITQIRLEHDVNIQFPDKDDGNQPQDQITITGYEK 65
Query: 144 GIASAKRRLDLLL 156
+A+ + ++
Sbjct: 66 NTEAARDAILRIV 78
>d2ctja1 d.51.1.1 (A:8-89) Vigilin {Human (Homo sapiens) [TaxId:
9606]}
Length = 82
Score = 46.4 bits (110), Expect = 1e-07
Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 1/64 (1%)
Query: 94 QCHIPKSFYPFIIGVKGSTKRRIESE-TNTQLSIPRQGQTGDIIISSYSERGIASAKRRL 152
+ IP + +IG KG R I E + P +G D ++ + AK++L
Sbjct: 13 EVSIPAKLHNSLIGTKGRLIRSIMEECGGVHIHFPVEGSGSDTVVIRGPSSDVEKAKKQL 72
Query: 153 DLLL 156
L
Sbjct: 73 LHLA 76
>d2je6i3 d.51.1.1 (I:153-221) Exosome complex RNA-binding protein 1,
ECR1 {Sulfolobus solfataricus [TaxId: 2287]}
Length = 69
Score = 44.3 bits (105), Expect = 6e-07
Identities = 9/60 (15%), Positives = 18/60 (30%), Gaps = 3/60 (5%)
Query: 96 HIPKSFYPFIIGVKGSTKRRIESETNTQLSIPRQGQTGDIIISSYSERGIASAKRRLDLL 155
I P +IG S + S++ + + G I + S + +
Sbjct: 6 DIMPVKVPRVIGKNKSMYETLTSKSGCSIFV---ANNGRIWATCPSRFSEEILIEAIRKI 62
>d2ctfa1 d.51.1.1 (A:7-96) Vigilin {Human (Homo sapiens) [TaxId:
9606]}
Length = 90
Score = 42.9 bits (101), Expect = 3e-06
Identities = 10/61 (16%), Positives = 20/61 (32%), Gaps = 4/61 (6%)
Query: 94 QCHIPKSFYPFIIGVKGSTKRRIESE-TNTQLSIPRQGQTGDIIISSYSERGIASAKRRL 152
P + FIIG KG +I + + I ++ A+ ++
Sbjct: 24 SVAAPSWLHRFIIGKKGQNLAKITQQMPKVHIEFTEGED---KITLEGPTEDVSVAQEQI 80
Query: 153 D 153
+
Sbjct: 81 E 81
>d1x4na1 d.51.1.1 (A:8-86) Far upstream binding element, FBP {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 79
Score = 41.3 bits (97), Expect = 8e-06
Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Query: 97 IPKSFYPFIIGVKGSTKRRIESETNTQLSIPRQ--GQTGDIIISSYSERGIASAKRRLDL 154
+P FIIG G RI+ E+ ++ I G + + + + SAKR LD
Sbjct: 14 VPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAKRLLDQ 73
Query: 155 LL 156
++
Sbjct: 74 IV 75
>d2z0sa2 d.51.1.1 (A:148-234) Exosome complex RNA-binding protein 1,
ECR1 {Aeropyrum pernix [TaxId: 56636]}
Length = 87
Score = 40.9 bits (96), Expect = 1e-05
Identities = 13/60 (21%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
Query: 96 HIPKSFYPFIIGVKGSTKRRIESETNTQLSIPRQGQTGDIIISSYSERGIASAKRRLDLL 155
I + P +IG K S + +E +T ++ + + G I + +E A A + ++
Sbjct: 6 EISPAKVPRVIGRKMSMLKTLEEKTECKIFV---ARNGRIHLECPNEDLEAIAVMAIKII 62
>d1tuaa1 d.51.1.1 (A:1-84) Hypothetical protein APE0754 {Aeropyrum
pernix [TaxId: 56636]}
Length = 84
Score = 40.5 bits (95), Expect = 2e-05
Identities = 9/55 (16%), Positives = 20/55 (36%), Gaps = 2/55 (3%)
Query: 97 IPKSFYPFIIGVKGSTKRRIESETNTQLSIPRQGQTGDIIISSYSERGIASAKRR 151
+ +IG +G K I T T +++ + +I+ +E +
Sbjct: 9 VKPERLGAVIGPRGEVKAEIMRRTGTVITVDT--ENSMVIVEPEAEGIPPVNLMK 61
>d1j4wa1 d.51.1.1 (A:1-74) Far upstream binding element, FBP {Human
(Homo sapiens) [TaxId: 9606]}
Length = 74
Score = 39.9 bits (93), Expect = 2e-05
Identities = 12/71 (16%), Positives = 25/71 (35%), Gaps = 4/71 (5%)
Query: 89 GQYKYQCHIPKSFYPFIIGVKGSTKRRIESETNTQLSIPRQGQTGD---IIISSYSERGI 145
G + IP+ +IG G ++I+++ ++ T I+ +
Sbjct: 1 GSHMIDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPERIAQITGPPD-RA 59
Query: 146 ASAKRRLDLLL 156
A + LL
Sbjct: 60 QHAAEIITDLL 70
>d2axya1 d.51.1.1 (A:11-81) Poly(RC)-binding protein 2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 71
Score = 39.4 bits (92), Expect = 4e-05
Identities = 11/56 (19%), Positives = 22/56 (39%)
Query: 97 IPKSFYPFIIGVKGSTKRRIESETNTQLSIPRQGQTGDIIISSYSERGIASAKRRL 152
+ IIG KG + +++ E+ +++I II + I A +
Sbjct: 10 MHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNAIFKAFAMI 65
>d2ba0a3 d.51.1.1 (A:136-219) Exosome complex RNA-binding protein 1,
ECR1 {Archaeoglobus fulgidus [TaxId: 2234]}
Length = 84
Score = 38.2 bits (89), Expect = 1e-04
Identities = 14/59 (23%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Query: 97 IPKSFYPFIIGVKGSTKRRIESETNTQLSIPRQGQTGDIIISSYSERGIASAKRRLDLL 155
I + P +IG KGS + ++SE + Q+ + + G I ++ ++ A+ + L+
Sbjct: 7 INPARVPRVIGKKGSMIKLLKSELDVQIVVGQNGL---IWVNGDRR-KVSIAEEAIYLI 61
>d1x4ma1 d.51.1.1 (A:8-88) Far upstream binding element, FBP {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 81
Score = 37.2 bits (86), Expect = 2e-04
Identities = 12/73 (16%), Positives = 27/73 (36%), Gaps = 4/73 (5%)
Query: 88 DGQYKYQCHIPKSFYPFIIGVKGSTKRRIESETNTQLSIPRQGQ----TGDIIISSYSER 143
G + IP S +IG G T ++++ ++ + + G + +
Sbjct: 5 PGNAVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRITGDPY 64
Query: 144 GIASAKRRLDLLL 156
+ AK + L+
Sbjct: 65 KVQQAKEMVLELI 77
>d1zzka1 d.51.1.1 (A:11-85) HnRNP K, KH3 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 75
Score = 37.2 bits (86), Expect = 3e-04
Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Query: 97 IPKSFYPFIIGVKGSTKRRIESETNTQLSI--PRQGQTGDIIISSYSERGIASAKRRLDL 154
IPK IIG G ++I E+ + I P +G II + ++ I +A+ L
Sbjct: 10 IPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYLLQN 69
Query: 155 LL 156
+
Sbjct: 70 SV 71
>d1we8a_ d.51.1.1 (A:) Tudor and KH domain containing protein, Tdrkh
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 104
Score = 37.6 bits (87), Expect = 3e-04
Identities = 14/66 (21%), Positives = 28/66 (42%), Gaps = 6/66 (9%)
Query: 96 HIPKSFYPFIIGVKGSTKRRIESETNTQLSIPRQGQTGD-----IIISSYSERGIASAKR 150
+P+ IIG G T R I + +++ ++ + I IS + +A+AK
Sbjct: 20 SVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEGTLLLSRLIKISGTQK-EVAAAKH 78
Query: 151 RLDLLL 156
+ +
Sbjct: 79 LILEKV 84
>d1wvna1 d.51.1.1 (A:5-74) Poly(RC)-binding protein 1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 70
Score = 36.3 bits (84), Expect = 4e-04
Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Query: 90 QYKYQCHIPKSFYPFIIGVKGSTKRRIESETNTQLSI--PRQGQTGDIIISSYSERGIAS 147
Q ++ IP + IIG +G+ I + Q+ I P +G +G + + S I+
Sbjct: 1 QTTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISL 60
Query: 148 AKRRL 152
A+ +
Sbjct: 61 AQYLI 65
>d1dtja_ d.51.1.1 (A:) Neuro-oncological ventral antigen 2, nova-2,
KH3 {Human (Homo sapiens) [TaxId: 9606]}
Length = 74
Score = 34.8 bits (80), Expect = 0.001
Identities = 10/65 (15%), Positives = 26/65 (40%), Gaps = 5/65 (7%)
Query: 97 IPKSFYPFIIGVKGSTKRRIESETNTQLSIPRQGQTGD-----IIISSYSERGIASAKRR 151
+P++ I+G G T + T ++ I ++G+ + + S +A+
Sbjct: 9 VPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAAQYL 68
Query: 152 LDLLL 156
+ +
Sbjct: 69 ISQRV 73
>d2cpqa1 d.51.1.1 (A:212-289) Fragile X mental retardation syndrome
related protein 1, FXR1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 78
Score = 34.1 bits (78), Expect = 0.003
Identities = 10/67 (14%), Positives = 21/67 (31%), Gaps = 1/67 (1%)
Query: 89 GQYKYQCHIPKSFYPFIIGVKGSTKRRIESETNTQLSIPRQGQTGDIIISSYSERGIASA 148
+ + + + IG GS ++ + TG I S + A
Sbjct: 6 AAFHEEFVVREDLMGLAIGTHGSNIQQARKVPGVTAIELDE-DTGTFRIYGESADAVKKA 64
Query: 149 KRRLDLL 155
+ L+ +
Sbjct: 65 RGFLEFV 71
>d1tuaa2 d.51.1.1 (A:85-188) Hypothetical protein APE0754 {Aeropyrum
pernix [TaxId: 56636]}
Length = 104
Score = 34.3 bits (79), Expect = 0.004
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
Query: 105 IIGVKGSTKRRIESETNTQLSIPRQGQTGDIIISSYSERGIASAKRRLDLLL 156
IIG G +R IE T+T +++ G+ II Y +AK+ +++L
Sbjct: 27 IIGEGGRARRTIEEMTDTYINV---GEYEVAIIGDYE--RAMAAKQAIEMLA 73
>d1j4wa2 d.51.1.1 (A:104-174) Far upstream binding element, FBP
{Human (Homo sapiens) [TaxId: 9606]}
Length = 71
Score = 31.8 bits (72), Expect = 0.018
Identities = 10/66 (15%), Positives = 25/66 (37%), Gaps = 5/66 (7%)
Query: 92 KYQCHIPKSFYPFIIGVKGSTKRRIESETNTQLSIPRQGQTGD-----IIISSYSERGIA 146
++ +P IIG G T + I ++ ++ + R + + + I
Sbjct: 2 EFNFIVPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQID 61
Query: 147 SAKRRL 152
A++ +
Sbjct: 62 YARQLI 67
>d1e3ha4 d.52.3.1 (A:579-632) Polynucleotide phosphorylase/guanosine
pentaphosphate synthase (PNPase/GPSI), domain 6
{Streptomyces antibioticus [TaxId: 1890]}
Length = 54
Score = 30.4 bits (69), Expect = 0.034
Identities = 11/44 (25%), Positives = 19/44 (43%), Gaps = 3/44 (6%)
Query: 96 HIPKSFYPFIIGVKGSTKRRIESETNTQLSIPRQGQTGDIIISS 139
IP +IG K +I+ +T +++I G I I +
Sbjct: 8 KIPVDKIGEVIGPKRQMINQIQEDTGAEITI---EDDGTIYIGA 48
>d1uhpa_ b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 107
Score = 31.5 bits (71), Expect = 0.042
Identities = 11/54 (20%), Positives = 21/54 (38%), Gaps = 4/54 (7%)
Query: 199 IEESLFQEPGRLHITMGMLMLAD----SVERDQAVEVLQKCGNNIILPILRSQR 248
++ + G L I ++ + DQAVE + I++ +LR
Sbjct: 49 VDSGPAAKEGGLQIHDRIIEVNGRDLSRATHDQAVEAFKTAKEPIVVQVLRRTS 102
>d1k1ga_ d.51.1.1 (A:) RNA splicing factor 1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 122
Score = 29.0 bits (65), Expect = 0.42
Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 6/66 (9%)
Query: 97 IPKSFYP------FIIGVKGSTKRRIESETNTQLSIPRQGQTGDIIISSYSERGIASAKR 150
IP+ YP +IG +G+T + IE E N ++ I +G + + + +
Sbjct: 9 IPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQMLPGEDE 68
Query: 151 RLDLLL 156
L L+
Sbjct: 69 PLHALV 74
>d2bl5a1 d.51.1.1 (A:1-134) Quaking protein A (Xqua) {African clawed
frog (Xenopus laevis) [TaxId: 8355]}
Length = 134
Score = 29.0 bits (65), Expect = 0.51
Identities = 10/36 (27%), Positives = 20/36 (55%), Gaps = 6/36 (16%)
Query: 97 IPKSFYP------FIIGVKGSTKRRIESETNTQLSI 126
+P YP I+G +G T +++E+ET ++ +
Sbjct: 8 VPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMV 43
>d1rgra_ b.36.1.1 (A:) Synaptic protein PSD-95 {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 93
Score = 27.6 bits (61), Expect = 0.74
Identities = 13/51 (25%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Query: 199 IEESLFQEPGRLHITMGMLMLAD----SVERDQAVEVLQKCGNNIILPILR 245
I + GRL + +L + + V AVE L++ G+ + L ++R
Sbjct: 39 IPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMR 89
>d1um1a_ b.36.1.1 (A:) Hypothetical protein KIAA1849 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 110
Score = 28.0 bits (62), Expect = 0.85
Identities = 9/53 (16%), Positives = 22/53 (41%), Gaps = 4/53 (7%)
Query: 199 IEESLFQEPGRLHITMGMLMLAD----SVERDQAVEVLQKCGNNIILPILRSQ 247
+ S GRL + +L + + +AV++++ G + + +S
Sbjct: 44 LPGSPAAADGRLSLGDRILEVNGSSLLGLGYLRAVDLIRHGGKKMRFLVAKSD 96
>d1ujua_ b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 111
Score = 27.7 bits (61), Expect = 1.1
Identities = 8/52 (15%), Positives = 21/52 (40%), Gaps = 4/52 (7%)
Query: 199 IEESLFQEPGRLHITMGMLMLAD----SVERDQAVEVLQKCGNNIILPILRS 246
GRL + + +L + + +AV++L+ G+ + + +
Sbjct: 52 SPTGAAGRDGRLRVGLRLLEVNQQSLLGLTHGEAVQLLRSVGDTLTVLVCDG 103
>d1rgwa_ b.36.1.1 (A:) Zasp (Cypher, Oracle 1) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 85
Score = 26.7 bits (59), Expect = 1.5
Identities = 6/28 (21%), Positives = 15/28 (53%)
Query: 221 DSVERDQAVEVLQKCGNNIILPILRSQR 248
D++ +A ++ N+ L + +S+R
Sbjct: 58 DTMTHLEAQNKIKSASYNLSLTLQKSKR 85
>d1v62a_ b.36.1.1 (A:) Glutamate receptor interacting protein 2,
GRIP2 (KIAA1719) {Human (Homo sapiens) [TaxId: 9606]}
Length = 117
Score = 27.3 bits (60), Expect = 1.6
Identities = 11/60 (18%), Positives = 21/60 (35%), Gaps = 4/60 (6%)
Query: 199 IEESLFQEPGRLHITMGMLMLAD----SVERDQAVEVLQKCGNNIILPILRSQRIKINLK 254
S+ G LH +L + +A ++L + L IL + + L+
Sbjct: 50 KPASVVDRSGALHPGDHILSIDGTSMEHCSLLEATKLLASISEKVRLEILPVPQSQRPLR 109
>d2fcfa1 b.36.1.1 (A:1148-1243) Multiple PDZ domain protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 96
Score = 26.4 bits (58), Expect = 2.4
Identities = 11/51 (21%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
Query: 199 IEESLFQEPGRLHITMGMLMLAD----SVERDQAVEVLQKCGNNIILPILR 245
+E+S + G L ++ + +QAVE ++K GN ++ +
Sbjct: 44 LEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQS 94
>d2csja1 b.36.1.1 (A:8-111) Tight junction protein ZO-2, Tjp2 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 104
Score = 26.4 bits (58), Expect = 2.5
Identities = 7/31 (22%), Positives = 17/31 (54%)
Query: 221 DSVERDQAVEVLQKCGNNIILPILRSQRIKI 251
+ V AV+ L+K G + + R +++++
Sbjct: 71 EDVLHSFAVQQLRKSGKIAAIVVKRPRKVQV 101
>d1jfib_ a.22.1.3 (B:) Negative cofactor 2, NC2, beta chain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 135
Score = 26.8 bits (59), Expect = 2.5
Identities = 5/25 (20%), Positives = 13/25 (52%)
Query: 328 TNSEKRSTFNAKDILESLGDFEFGE 352
N ++ T + + ++++L FG
Sbjct: 50 CNKSEKKTISPEHVIQALESLGFGS 74
>d1wf8a1 b.36.1.1 (A:8-101) Neurabin-i {Human (Homo sapiens) [TaxId:
9606]}
Length = 94
Score = 26.0 bits (57), Expect = 3.2
Identities = 11/53 (20%), Positives = 21/53 (39%), Gaps = 4/53 (7%)
Query: 199 IEESLFQEPGRLHITMGMLMLAD----SVERDQAVEVLQKCGNNIILPILRSQ 247
E Q GR+ + ++ + V ++ A VL+ N+ I R +
Sbjct: 41 TEGGAAQRDGRIQVNDQIVEVDGISLVGVTQNFAATVLRNTKGNVRFVIGREK 93
>d1whaa_ b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 105
Score = 26.1 bits (57), Expect = 3.8
Identities = 11/51 (21%), Positives = 16/51 (31%), Gaps = 4/51 (7%)
Query: 199 IEESLFQEPGRLHITMGMLMLAD----SVERDQAVEVLQKCGNNIILPILR 245
E G L + +L + D AV +L I L + R
Sbjct: 46 AEGGAAHRAGTLQVGDRVLSINGVDVTEARHDHAVSLLTAASPTIALLLER 96
>d2h3la1 b.36.1.1 (A:1310-1412) Erbin {Human (Homo sapiens) [TaxId:
9606]}
Length = 103
Score = 26.0 bits (57), Expect = 3.8
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 221 DSVERDQAVEVLQKCGNNIILPILR 245
++E QAV +L+ N + L I+R
Sbjct: 75 INIEHGQAVSLLKTFQNTVELIIVR 99
>d2bykb1 a.22.1.3 (B:11-99) Chrac-14 {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 89
Score = 25.2 bits (55), Expect = 4.7
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 328 TNSEKRSTFNAKDILESLGDFEFGE 352
+ + T AKDIL++L + +F
Sbjct: 46 AHKQNHKTITAKDILQTLTELDFES 70
>d1ozia_ b.36.1.1 (A:) Phosphatase hPTP1e {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 99
Score = 25.3 bits (55), Expect = 4.8
Identities = 13/53 (24%), Positives = 22/53 (41%), Gaps = 4/53 (7%)
Query: 199 IEESLFQEPGRLHITMGMLMLAD----SVERDQAVEVLQKCGNNIILPILRSQ 247
I + + GR+H +L + QAVE L+ G + L + + Q
Sbjct: 45 IPKGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEKGQ 97
>d1n1ja_ a.22.1.3 (A:) Nuclear transcription factor Y subunit beta
(Nf-Yb3) {Human (Homo sapiens) [TaxId: 9606]}
Length = 87
Score = 25.2 bits (55), Expect = 5.0
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 328 TNSEKRSTFNAKDILESLGDFEFGE 352
+ EKR T N +DIL ++ F
Sbjct: 49 CHQEKRKTINGEDILFAMSTLGFDS 73
>d1q3oa_ b.36.1.1 (A:) Shank1, PDZ domain {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 104
Score = 25.4 bits (55), Expect = 5.3
Identities = 5/24 (20%), Positives = 14/24 (58%)
Query: 225 RDQAVEVLQKCGNNIILPILRSQR 248
Q V ++++ GN +++ ++ R
Sbjct: 80 HRQVVNMIRQGGNTLMVKVVMVTR 103
>d1vb7a_ b.36.1.1 (A:) PDZ-LIM protein mystique {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 94
Score = 25.3 bits (55), Expect = 5.9
Identities = 4/28 (14%), Positives = 14/28 (50%)
Query: 221 DSVERDQAVEVLQKCGNNIILPILRSQR 248
+++ +A +++ + + L + RS
Sbjct: 63 ENMLHAEAQSKIRQSASPLRLQLDRSSG 90
>d2q37a1 a.288.1.1 (A:6-160) OHCU decarboxylase, UraD {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 155
Score = 25.6 bits (56), Expect = 6.5
Identities = 9/33 (27%), Positives = 12/33 (36%), Gaps = 8/33 (24%)
Query: 102 YPFIIGVKGSTK--------RRIESETNTQLSI 126
+ FII G T R E+ +L I
Sbjct: 104 FIFIICASGRTHAEMLHALKERYENRPIVELEI 136
>d1uewa_ b.36.1.1 (A:) Membrane associated guanylate kinase
inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 114
Score = 25.4 bits (55), Expect = 6.8
Identities = 4/27 (14%), Positives = 13/27 (48%)
Query: 225 RDQAVEVLQKCGNNIILPILRSQRIKI 251
V++++ G ++ L I+ + +
Sbjct: 81 HADIVKLIKDAGLSVTLRIIPQEELNS 107
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.137 0.399
Gapped
Lambda K H
0.267 0.0683 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,427,156
Number of extensions: 67639
Number of successful extensions: 201
Number of sequences better than 10.0: 1
Number of HSP's gapped: 200
Number of HSP's successfully gapped: 47
Length of query: 380
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 293
Effective length of database: 1,213,086
Effective search space: 355434198
Effective search space used: 355434198
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (24.7 bits)