BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2082
(314 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3GC3|A Chain A, Crystal Structure Of Arrestin2s And Clathrin
Length = 385
Score = 270 bits (690), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 146/342 (42%), Positives = 207/342 (60%), Gaps = 47/342 (13%)
Query: 6 KVFKKCSPNGKLTLYMGKRDFVDYVTGVEPIDGVVVFEEDYIQDRKVFGQVVCSFRYGRE 65
+VFKK SPNGKLT+Y+GKRDFVD++ VEP+DGVV+ + +Y+++R+V+ + C+FRYGRE
Sbjct: 7 RVFKKASPNGKLTVYLGKRDFVDHIDLVEPVDGVVLVDPEYLKERRVYVTLTCAFRYGRE 66
Query: 66 EDEILGLNFQKELYLASEQIYPRSEKQHTSLTKMQDCLLKKLGPKAYPFTFNITPAAPPS 125
+ ++LGL F+K+L++A+ Q +P + + LT++Q+ L+KKLG AYPFTF I P P S
Sbjct: 67 DLDVLGLTFRKDLFVANVQSFPPAPEDKKPLTRLQERLIKKLGEHAYPFTFEIPPNLPCS 126
Query: 126 VTLQPGPDETGEPCGVTYYVKLFVGENETDRSHRRSTVALGIRKIQYAPSKNGRQPCTVV 185
VTLQPGP++TG+ CGV Y VK F EN ++ H+R++V L IRK+QYAP + G QP
Sbjct: 127 VTLQPGPEDTGKACGVDYEVKAFCAENLEEKIHKRNSVRLVIRKVQYAPERPGPQPTAET 186
Query: 186 RKDFMLSPGDLELEVTLDKQLYAHNEKIAVSICIRNNSNKVVKKIKAMVQQGVDVVLFQN 245
+ F++S L LE +LDK++Y H E I+V++ + NN+NK VKKIK V+Q D+ LF
Sbjct: 187 TRQFLMSDKPLHLEASLDKEIYYHGEPISVNVHVTNNTNKTVKKIKISVRQYADICLFNT 246
Query: 246 GQFRHSV------DCV----------------------------------ETHLASPD-- 263
Q++ V D V +T+LAS
Sbjct: 247 AQYKCPVAMEEADDTVAPSSTFCKVYTLTPFLANNREKRGLALDGKLKHEDTNLASSTLL 306
Query: 264 ----PKDAFGIVVSYMVKVKXXXXXXXXXXXXXXPFILMHPK 301
++ GI+VSY VKVK PF LMHPK
Sbjct: 307 REGANREILGIIVSYKVKVK-LVVSRGGDVAVELPFTLMHPK 347
>pdb|1G4M|A Chain A, Crystal Structure Of Bovine Beta-Arrestin 1
pdb|1G4M|B Chain B, Crystal Structure Of Bovine Beta-Arrestin 1
pdb|1G4R|A Chain A, Crystal Structure Of Bovine Beta-Arrestin 1
pdb|3GD1|C Chain C, Structure Of An ArrestinCLATHRIN COMPLEX REVEALS A NOVEL
Clathrin Binding Domain That Modulates Receptor
Trafficking
pdb|3GD1|E Chain E, Structure Of An ArrestinCLATHRIN COMPLEX REVEALS A NOVEL
Clathrin Binding Domain That Modulates Receptor
Trafficking
Length = 393
Score = 269 bits (687), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 146/349 (41%), Positives = 207/349 (59%), Gaps = 53/349 (15%)
Query: 6 KVFKKCSPNGKLTLYMGKRDFVDYVTGVEPIDGVVVFEEDYIQDRKVFGQVVCSFRYGRE 65
+VFKK SPNGKLT+Y+GKRDFVD++ VEP+DGVV+ + +Y+++R+V+ + C+FRYGRE
Sbjct: 7 RVFKKASPNGKLTVYLGKRDFVDHIDLVEPVDGVVLVDPEYLKERRVYVTLTCAFRYGRE 66
Query: 66 EDEILGLNFQKELYLASEQIYPRSEKQHTSLTKMQDCLLKKLGPKAYPFTFNITPAAPPS 125
+ ++LGL F+K+L++A+ Q +P + + LT++Q+ L+KKLG AYPFTF I P P S
Sbjct: 67 DLDVLGLTFRKDLFVANVQSFPPAPEDKKPLTRLQERLIKKLGEHAYPFTFEIPPNLPCS 126
Query: 126 VTLQPGPDETGEPCGVTYYVKLFVGENETDRSHRRSTVALGIRKIQYAPSKNGRQPCTVV 185
VTLQPGP++TG+ CGV Y VK F EN ++ H+R++V L IRK+QYAP + G QP
Sbjct: 127 VTLQPGPEDTGKACGVDYEVKAFCAENLEEKIHKRNSVRLVIRKVQYAPERPGPQPTAET 186
Query: 186 RKDFMLSPGDLELEVTLDKQLYAHNEKIAVSICIRNNSNKVVKKIKAMVQQGVDVVLFQN 245
+ F++S L LE +LDK++Y H E I+V++ + NN+NK VKKIK V+Q D+ LF
Sbjct: 187 TRQFLMSDKPLHLEASLDKEIYYHGEPISVNVHVTNNTNKTVKKIKISVRQYADICLFNT 246
Query: 246 GQFRHSV------DCV----------------------------------ETHLASPD-- 263
Q++ V D V +T+LAS
Sbjct: 247 AQYKCPVAMEEADDTVAPSSTFCKVYTLTPFLANNREKRGLALDGKLKHEDTNLASSTLL 306
Query: 264 ----PKDAFGIVVSYMVKVKXXXXX-------XXXXXXXXXPFILMHPK 301
++ GI+VSY VKVK PF LMHPK
Sbjct: 307 REGANREILGIIVSYKVKVKLVVSRGGLLGDLASSDVAVELPFTLMHPK 355
>pdb|1JSY|A Chain A, Crystal Structure Of Bovine Arrestin-2
pdb|1ZSH|A Chain A, Crystal Structure Of Bovine Arrestin-2 In Complex With
Inositol Hexakisphosphate (Ip6)
pdb|2WTR|A Chain A, Full Length Arrestin2
Length = 418
Score = 268 bits (685), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 146/349 (41%), Positives = 207/349 (59%), Gaps = 53/349 (15%)
Query: 6 KVFKKCSPNGKLTLYMGKRDFVDYVTGVEPIDGVVVFEEDYIQDRKVFGQVVCSFRYGRE 65
+VFKK SPNGKLT+Y+GKRDFVD++ VEP+DGVV+ + +Y+++R+V+ + C+FRYGRE
Sbjct: 7 RVFKKASPNGKLTVYLGKRDFVDHIDLVEPVDGVVLVDPEYLKERRVYVTLTCAFRYGRE 66
Query: 66 EDEILGLNFQKELYLASEQIYPRSEKQHTSLTKMQDCLLKKLGPKAYPFTFNITPAAPPS 125
+ ++LGL F+K+L++A+ Q +P + + LT++Q+ L+KKLG AYPFTF I P P S
Sbjct: 67 DLDVLGLTFRKDLFVANVQSFPPAPEDKKPLTRLQERLIKKLGEHAYPFTFEIPPNLPCS 126
Query: 126 VTLQPGPDETGEPCGVTYYVKLFVGENETDRSHRRSTVALGIRKIQYAPSKNGRQPCTVV 185
VTLQPGP++TG+ CGV Y VK F EN ++ H+R++V L IRK+QYAP + G QP
Sbjct: 127 VTLQPGPEDTGKACGVDYEVKAFCAENLEEKIHKRNSVRLVIRKVQYAPERPGPQPTAET 186
Query: 186 RKDFMLSPGDLELEVTLDKQLYAHNEKIAVSICIRNNSNKVVKKIKAMVQQGVDVVLFQN 245
+ F++S L LE +LDK++Y H E I+V++ + NN+NK VKKIK V+Q D+ LF
Sbjct: 187 TRQFLMSDKPLHLEASLDKEIYYHGEPISVNVHVTNNTNKTVKKIKISVRQYADICLFNT 246
Query: 246 GQFRHSV------DCV----------------------------------ETHLASPD-- 263
Q++ V D V +T+LAS
Sbjct: 247 AQYKCPVAMEEADDTVAPSSTFCKVYTLTPFLANNREKRGLALDGKLKHEDTNLASSTLL 306
Query: 264 ----PKDAFGIVVSYMVKVKXXXXX-------XXXXXXXXXPFILMHPK 301
++ GI+VSY VKVK PF LMHPK
Sbjct: 307 REGANREILGIIVSYKVKVKLVVSRGGLLGDLASSDVAVELPFTLMHPK 355
>pdb|2WTR|B Chain B, Full Length Arrestin2
Length = 418
Score = 267 bits (682), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 145/349 (41%), Positives = 207/349 (59%), Gaps = 53/349 (15%)
Query: 6 KVFKKCSPNGKLTLYMGKRDFVDYVTGVEPIDGVVVFEEDYIQDRKVFGQVVCSFRYGRE 65
+VFKK SPNGKLT+Y+GKRDFVD++ VEP+DGVV+ + +Y+++R+V+ + C+FRYGRE
Sbjct: 7 RVFKKASPNGKLTVYLGKRDFVDHIDLVEPVDGVVLVDPEYLKERRVYVTLTCAFRYGRE 66
Query: 66 EDEILGLNFQKELYLASEQIYPRSEKQHTSLTKMQDCLLKKLGPKAYPFTFNITPAAPPS 125
+ +++GL F+K+L++A+ Q +P + + LT++Q+ L+KKLG AYPFTF I P P S
Sbjct: 67 DLDVVGLTFRKDLFVANVQSFPPAPEDKKPLTRLQERLIKKLGEHAYPFTFEIPPNLPCS 126
Query: 126 VTLQPGPDETGEPCGVTYYVKLFVGENETDRSHRRSTVALGIRKIQYAPSKNGRQPCTVV 185
VTLQPGP++TG+ CGV Y VK F EN ++ H+R++V L IRK+QYAP + G QP
Sbjct: 127 VTLQPGPEDTGKACGVDYEVKAFCAENLEEKIHKRNSVRLVIRKVQYAPERPGPQPTAET 186
Query: 186 RKDFMLSPGDLELEVTLDKQLYAHNEKIAVSICIRNNSNKVVKKIKAMVQQGVDVVLFQN 245
+ F++S L LE +LDK++Y H E I+V++ + NN+NK VKKIK V+Q D+ LF
Sbjct: 187 TRQFLMSDKPLHLEASLDKEIYYHGEPISVNVHVTNNTNKTVKKIKISVRQYADICLFNT 246
Query: 246 GQFRHSV------DCV----------------------------------ETHLASPD-- 263
Q++ V D V +T+LAS
Sbjct: 247 AQYKCPVAMEEADDTVAPSSTFCKVYTLTPFLANNREKRGLALDGKLKHEDTNLASSTLL 306
Query: 264 ----PKDAFGIVVSYMVKVKXXXXX-------XXXXXXXXXPFILMHPK 301
++ GI+VSY VKVK PF LMHPK
Sbjct: 307 REGANREILGIIVSYKVKVKLVVSRGGLLGDLASSDVAVELPFTLMHPK 355
>pdb|3P2D|A Chain A, Crystal Structure Of Arrestin-3 Reveals The Basis Of The
Difference In Receptor Binding Between Two Non-Visual
Subtypes
pdb|3P2D|B Chain B, Crystal Structure Of Arrestin-3 Reveals The Basis Of The
Difference In Receptor Binding Between Two Non-Visual
Subtypes
Length = 393
Score = 254 bits (650), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 143/355 (40%), Positives = 207/355 (58%), Gaps = 47/355 (13%)
Query: 6 KVFKKCSPNGKLTLYMGKRDFVDYVTGVEPIDGVVVFEEDYIQDRKVFGQVVCSFRYGRE 65
+VFKK SPN KLT+Y+GKRDFVD++ V+P+DGVV+ + DY++DRKVF + C+FRYGRE
Sbjct: 8 RVFKKSSPNCKLTVYLGKRDFVDHLDKVDPVDGVVLVDPDYLKDRKVFVTLTCAFRYGRE 67
Query: 66 EDEILGLNFQKELYLASEQIYPRSEKQHTSLTKMQDCLLKKLGPKAYPFTFNITPAAPPS 125
+ ++LGL+F+K+L++A+ Q +P + T++Q+ LL+KLG A+PF F I P S
Sbjct: 68 DLDVLGLSFRKDLFIANYQAFPPTPNPPRPPTRLQERLLRKLGQHAHPFFFTIPQNLPCS 127
Query: 126 VTLQPGPDETGEPCGVTYYVKLFVGENETDRSHRRSTVALGIRKIQYAPSKNGRQPCTVV 185
VTLQPGP++TG+ CGV + ++ F ++ ++SH+R++V L IRK+Q+AP K G QP
Sbjct: 128 VTLQPGPEDTGKACGVDFEIRAFCAKSLEEKSHKRNSVRLVIRKVQFAPEKPGPQPSAET 187
Query: 186 RKDFMLSPGDLELEVTLDKQLYAHNEKIAVSICIRNNSNKVVKKIKAMVQQGVDVVLFQN 245
+ F++S L LE +LDK+LY H E + V++ + NNS K VKKIK V+Q D+ LF
Sbjct: 188 TRHFLMSDRSLHLEASLDKELYYHGEPLNVNVHVTNNSTKTVKKIKVSVRQYADICLFST 247
Query: 246 GQFRHSVDCVE----------------------------------------THLASPD-- 263
Q++ V VE T+LAS
Sbjct: 248 AQYKCPVAQVEQDDQVSPSSTFCKVYTITPLLSNNREKRGLALDGKLKHEDTNLASSTIV 307
Query: 264 ----PKDAFGIVVSYMVKVKXXXXXXXXXXXXXXPFILMHPKVRLKMSATRAQTV 314
K+ GI+VSY VKVK PF+LMHPK ++ R Q+
Sbjct: 308 KEGANKEVLGILVSYRVKVK-LVVSRGGDVSVELPFVLMHPKPHDHIALPRPQSA 361
>pdb|1SUJ|A Chain A, X-Ray Crystal Structure Of Ambystoma Tigrinum Cone
Arrestin
Length = 392
Score = 239 bits (610), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 125/258 (48%), Positives = 180/258 (69%), Gaps = 2/258 (0%)
Query: 1 MVANFKVFKKCSPNGKLTLYMGKRDFVDYVTGVEPIDGVVVFEEDYIQDRKVFGQVVCSF 60
M KV+KK PN KL++Y+GKRDFVD+V VEP+DGVV+ + +Y++DRKVF + C+F
Sbjct: 1 MADGSKVYKKTCPNAKLSIYLGKRDFVDHVEHVEPVDGVVLIDPEYLKDRKVFVTLTCAF 60
Query: 61 RYGREEDEILGLNFQKELYLASEQIYPRSEKQHTSLTKMQDCLLKKLGPKAYPFTFNITP 120
RYGR++ +++G++F+K+LY + Q+YP K+ LT +Q+ L+KKLG AYPF F +
Sbjct: 61 RYGRDDLDLIGMSFRKDLYSLATQVYPPETKE--PLTPLQEKLMKKLGAHAYPFCFKMGT 118
Query: 121 AAPPSVTLQPGPDETGEPCGVTYYVKLFVGENETDRSHRRSTVALGIRKIQYAPSKNGRQ 180
P SVTLQPGPD+TG+ CGV + VK F EN ++ H+R++V L IRK+Q+AP+ G
Sbjct: 119 NLPCSVTLQPGPDDTGKSCGVDFEVKAFCAENLEEKIHKRNSVQLVIRKVQFAPANLGVA 178
Query: 181 PCTVVRKDFMLSPGDLELEVTLDKQLYAHNEKIAVSICIRNNSNKVVKKIKAMVQQGVDV 240
P T + + FMLS L LE +LDK++Y H E I V++ I N + K+VKKIK +V+Q DV
Sbjct: 179 PKTEITRQFMLSDRPLHLEASLDKEIYYHGEPINVNVKINNTTGKIVKKIKIIVEQVTDV 238
Query: 241 VLFQNGQFRHSVDCVETH 258
VLF ++ +V ET+
Sbjct: 239 VLFSLDKYVKTVCAEETN 256
>pdb|1AYR|A Chain A, Arrestin From Bovine Rod Outer Segments
pdb|1AYR|C Chain C, Arrestin From Bovine Rod Outer Segments
pdb|1AYR|B Chain B, Arrestin From Bovine Rod Outer Segments
pdb|1AYR|D Chain D, Arrestin From Bovine Rod Outer Segments
Length = 368
Score = 200 bits (508), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 98/262 (37%), Positives = 161/262 (61%), Gaps = 4/262 (1%)
Query: 4 NFKVFKKCSPNGKLTLYMGKRDFVDYVTGVEPIDGVVVFEEDYIQDRKVFGQVVCSFRYG 63
N +FKK S + +T+Y+GKRD++D+V VEP+DGVV+ + + ++ ++V+ + C+FRYG
Sbjct: 9 NHVIFKKISRDKSVTIYLGKRDYIDHVERVEPVDGVVLVDPELVKGKRVYVSLTCAFRYG 68
Query: 64 REEDEILGLNFQKELYLASEQIYPRSEKQHTSLTKMQDCLLKKLGPKAYPFTFNITPAAP 123
+E+ +++GL+F+++LY + Q++P + T++Q+ L+KKLG YPF P
Sbjct: 69 QEDIDVMGLSFRRDLYFSQVQVFPPVGASGAT-TRLQESLIKKLGANTYPFLLTFPDYLP 127
Query: 124 PSVTLQPGPDETGEPCGVTYYVKLFVGEN---ETDRSHRRSTVALGIRKIQYAPSKNGRQ 180
SV LQP P + G+ CGV + +K F + E D+ ++S+V L IRK+Q+AP G Q
Sbjct: 128 CSVMLQPAPQDVGKSCGVDFEIKAFATHSTDVEEDKIPKKSSVRLLIRKVQHAPRDMGPQ 187
Query: 181 PCTVVRKDFMLSPGDLELEVTLDKQLYAHNEKIAVSICIRNNSNKVVKKIKAMVQQGVDV 240
P F +S L L V+L K++Y H E I V++ + N++ K VKKIK +V+Q +V
Sbjct: 188 PRAEASWQFFMSDKPLRLAVSLSKEIYYHGEPIPVTVAVTNSTEKTVKKIKVLVEQVTNV 247
Query: 241 VLFQNGQFRHSVDCVETHLASP 262
VL+ + + +V E P
Sbjct: 248 VLYSSDYYIKTVAAEEAQEKVP 269
>pdb|3UGU|A Chain A, Crystal Structure Of P44 (Splice Variant Of Visual
Arrestin)
Length = 380
Score = 200 bits (508), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 98/262 (37%), Positives = 161/262 (61%), Gaps = 4/262 (1%)
Query: 4 NFKVFKKCSPNGKLTLYMGKRDFVDYVTGVEPIDGVVVFEEDYIQDRKVFGQVVCSFRYG 63
N +FKK S + +T+Y+GKRD++D+V VEP+DGVV+ + + ++ ++V+ + C+FRYG
Sbjct: 19 NHVIFKKISRDKSVTIYLGKRDYIDHVERVEPVDGVVLVDPELVKGKRVYVSLTCAFRYG 78
Query: 64 REEDEILGLNFQKELYLASEQIYPRSEKQHTSLTKMQDCLLKKLGPKAYPFTFNITPAAP 123
+E+ +++GL+F+++LY + Q++P + T++Q+ L+KKLG YPF P
Sbjct: 79 QEDIDVMGLSFRRDLYFSQVQVFPPVGASGAT-TRLQESLIKKLGANTYPFLLTFPDYLP 137
Query: 124 PSVTLQPGPDETGEPCGVTYYVKLFVGEN---ETDRSHRRSTVALGIRKIQYAPSKNGRQ 180
SV LQP P + G+ CGV + +K F + E D+ ++S+V L IRK+Q+AP G Q
Sbjct: 138 CSVMLQPAPQDVGKSCGVDFEIKAFATHSTDVEEDKIPKKSSVRLLIRKVQHAPRDMGPQ 197
Query: 181 PCTVVRKDFMLSPGDLELEVTLDKQLYAHNEKIAVSICIRNNSNKVVKKIKAMVQQGVDV 240
P F +S L L V+L K++Y H E I V++ + N++ K VKKIK +V+Q +V
Sbjct: 198 PRAEASWQFFMSDKPLRLAVSLSKEIYYHGEPIPVTVAVTNSTEKTVKKIKVLVEQVTNV 257
Query: 241 VLFQNGQFRHSVDCVETHLASP 262
VL+ + + +V E P
Sbjct: 258 VLYSSDYYIKTVAAEEAQEKVP 279
>pdb|3UGX|A Chain A, Crystal Structure Of Visual Arrestin
pdb|3UGX|B Chain B, Crystal Structure Of Visual Arrestin
pdb|3UGX|C Chain C, Crystal Structure Of Visual Arrestin
pdb|3UGX|D Chain D, Crystal Structure Of Visual Arrestin
Length = 414
Score = 199 bits (507), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 116/352 (32%), Positives = 183/352 (51%), Gaps = 55/352 (15%)
Query: 4 NFKVFKKCSPNGKLTLYMGKRDFVDYVTGVEPIDGVVVFEEDYIQDRKVFGQVVCSFRYG 63
N +FKK S + +T+Y+GKRD++D+V VEP+DGVV+ + + ++ ++V+ + C+FRYG
Sbjct: 19 NHVIFKKISRDKSVTIYLGKRDYIDHVERVEPVDGVVLVDPELVKGKRVYVSLTCAFRYG 78
Query: 64 REEDEILGLNFQKELYLASEQIYPRSEKQHTSLTKMQDCLLKKLGPKAYPFTFNITPAAP 123
+E+ +++GL+F+++LY + Q++P + T++Q+ L+KKLG YPF P
Sbjct: 79 QEDIDVMGLSFRRDLYFSQVQVFPPVGASGAT-TRLQESLIKKLGANTYPFLLTFPDYLP 137
Query: 124 PSVTLQPGPDETGEPCGVTYYVKLFVGEN---ETDRSHRRSTVALGIRKIQYAPSKNGRQ 180
SV LQP P + G+ CGV + +K F + E D+ ++S+V L IRK+Q+AP G Q
Sbjct: 138 CSVMLQPAPQDVGKSCGVDFEIKAFATHSTDVEEDKIPKKSSVRLLIRKVQHAPRDMGPQ 197
Query: 181 PCTVVRKDFMLSPGDLELEVTLDKQLYAHNEKIAVSICIRNNSNKVVKKIKAMVQQGVDV 240
P F +S L L V+L K++Y H E I V++ + N++ K VKKIK +V+Q +V
Sbjct: 198 PRAEASWQFFMSDKPLRLAVSLSKEIYYHGEPIPVTVAVTNSTEKTVKKIKVLVEQVTNV 257
Query: 241 VLFQNGQFRHSVDCVE----------------------------------------THLA 260
VL+ + + +V E T+LA
Sbjct: 258 VLYSSDYYIKTVAAEEAQEKVPPNSSLTKTLTLVPLLANNRERRGIALDGKIKHEDTNLA 317
Query: 261 SPD------PKDAFGIVVSYMVKVKXXXX-----XXXXXXXXXXPFILMHPK 301
S K GI+VSY +KVK PF LMHP+
Sbjct: 318 SSTIIKEGIDKTVMGILVSYQIKVKLTVSGLLGELTSSEVATEVPFRLMHPQ 369
>pdb|1CF1|A Chain A, Arrestin From Bovine Rod Outer Segments
pdb|1CF1|B Chain B, Arrestin From Bovine Rod Outer Segments
pdb|1CF1|C Chain C, Arrestin From Bovine Rod Outer Segments
pdb|1CF1|D Chain D, Arrestin From Bovine Rod Outer Segments
Length = 404
Score = 199 bits (506), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 116/352 (32%), Positives = 183/352 (51%), Gaps = 55/352 (15%)
Query: 4 NFKVFKKCSPNGKLTLYMGKRDFVDYVTGVEPIDGVVVFEEDYIQDRKVFGQVVCSFRYG 63
N +FKK S + +T+Y+GKRD++D+V VEP+DGVV+ + + ++ ++V+ + C+FRYG
Sbjct: 9 NHVIFKKISRDKSVTIYLGKRDYIDHVERVEPVDGVVLVDPELVKGKRVYVSLTCAFRYG 68
Query: 64 REEDEILGLNFQKELYLASEQIYPRSEKQHTSLTKMQDCLLKKLGPKAYPFTFNITPAAP 123
+E+ +++GL+F+++LY + Q++P + T++Q+ L+KKLG YPF P
Sbjct: 69 QEDIDVMGLSFRRDLYFSQVQVFPPVGASGAT-TRLQESLIKKLGANTYPFLLTFPDYLP 127
Query: 124 PSVTLQPGPDETGEPCGVTYYVKLFVGEN---ETDRSHRRSTVALGIRKIQYAPSKNGRQ 180
SV LQP P + G+ CGV + +K F + E D+ ++S+V L IRK+Q+AP G Q
Sbjct: 128 CSVMLQPAPQDVGKSCGVDFEIKAFATHSTDVEEDKIPKKSSVRLLIRKVQHAPRDMGPQ 187
Query: 181 PCTVVRKDFMLSPGDLELEVTLDKQLYAHNEKIAVSICIRNNSNKVVKKIKAMVQQGVDV 240
P F +S L L V+L K++Y H E I V++ + N++ K VKKIK +V+Q +V
Sbjct: 188 PRAEASWQFFMSDKPLRLAVSLSKEIYYHGEPIPVTVAVTNSTEKTVKKIKVLVEQVTNV 247
Query: 241 VLFQNGQFRHSVDCVE----------------------------------------THLA 260
VL+ + + +V E T+LA
Sbjct: 248 VLYSSDYYIKTVAAEEAQEKVPPNSSLTKTLTLVPLLANNRERRGIALDGKIKHEDTNLA 307
Query: 261 SPD------PKDAFGIVVSYMVKVKXXXX-----XXXXXXXXXXPFILMHPK 301
S K GI+VSY +KVK PF LMHP+
Sbjct: 308 SSTIIKEGIDKTVMGILVSYQIKVKLTVSGLLGELTSSEVATEVPFRLMHPQ 359
>pdb|2AGJ|L Chain L, Crystal Structure Of A Glycosylated Fab From An Igm
Cryoglobulin With Properties Of A Natural Proteolytic
Antibody
Length = 215
Score = 32.3 bits (72), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 47/116 (40%), Gaps = 18/116 (15%)
Query: 25 DFVDYVTGVEPIDGVVVFEEDYIQDRKVFGQVVCSFRYGREEDEILGLNFQKELYLASEQ 84
DF ++G+EP D VV + + Y + FGQ + ++ + S
Sbjct: 71 DFTLSISGLEPEDFVVYYCQQYASSPRTFGQGT-------------KVEIKRTVAAPSVF 117
Query: 85 IYPRSEKQHTSLTKMQDCLLKKLGPKAYPFTFNITPA-----APPSVTLQPGPDET 135
I+P S++Q S T CLL P+ + + A + SVT Q D T
Sbjct: 118 IFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDST 173
>pdb|2GY5|A Chain A, Tie2 Ligand-Binding Domain Crystal Structure
pdb|2GY7|B Chain B, Angiopoietin-2TIE2 COMPLEX CRYSTAL STRUCTURE
Length = 423
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 6/35 (17%)
Query: 239 DVVLFQNGQFRHSV------DCVETHLASPDPKDA 267
D V+++NG F HSV D +E HL P+DA
Sbjct: 130 DAVIYKNGSFIHSVPRHEVPDILEVHLPHAQPQDA 164
>pdb|1U6A|L Chain L, Crystal Structure Of The Broadly Neutralizing Anti-Hiv Fab
F105
pdb|3HI1|L Chain L, Structure Of Hiv-1 Gp120 (Core With V3) In Complex With
Cd4-Binding- Site Antibody F105
pdb|3HI1|A Chain A, Structure Of Hiv-1 Gp120 (Core With V3) In Complex With
Cd4-Binding- Site Antibody F105
Length = 215
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 47/116 (40%), Gaps = 18/116 (15%)
Query: 25 DFVDYVTGVEPIDGVVVFEEDYIQDRKVFGQVVCSFRYGREEDEILGLNFQKELYLASEQ 84
DF ++ VEP D V + + Y VC+F G + L ++ + S
Sbjct: 71 DFTLTISRVEPEDFAVYYCQQYDNS-------VCTFGQGTK------LEIKRTVAAPSVF 117
Query: 85 IYPRSEKQHTSLTKMQDCLLKKLGPKAYPFTFNITPA-----APPSVTLQPGPDET 135
I+P S++Q S T CLL P+ + + A + SVT Q D T
Sbjct: 118 IFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDST 173
>pdb|4DN3|L Chain L, Crystal Structure Of Anti-Mcp-1 Antibody Cnto888
pdb|4DN4|L Chain L, Crystal Structure Of The Complex Between Cnto888 Fab And
Mcp-1 Mutant P8a
Length = 216
Score = 28.1 bits (61), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 48/116 (41%), Gaps = 17/116 (14%)
Query: 25 DFVDYVTGVEPIDGVVVFEEDYIQDRKVFGQVVCSFRYGREEDEILGLNFQKELYLASEQ 84
DF ++ +EP D V + YIQ + SF +G+ + ++ + S
Sbjct: 71 DFTLTISSLEPEDFAVYYCHQYIQ--------LHSFTFGQGTK----VEIKRTVAAPSVF 118
Query: 85 IYPRSEKQHTSLTKMQDCLLKKLGPKAYPFTFNITPA-----APPSVTLQPGPDET 135
I+P S++Q S T CLL P+ + + A + SVT Q D T
Sbjct: 119 IFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDST 174
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 28.1 bits (61), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 3/68 (4%)
Query: 173 APSKNGRQPCTVVRKDFMLSPGDLELEVTLDKQLYAHNEKIAVSICIRNNSNKVVKKIKA 232
A KNGR P + ++ L L LE D N + + + RN +VV K
Sbjct: 30 AKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVV---KL 86
Query: 233 MVQQGVDV 240
+++ G DV
Sbjct: 87 LLEAGADV 94
>pdb|1TZG|L Chain L, Crystal Structure Of Hiv-1 Neutralizing Human Fab 4e10 In
Complex With A 13-residue Peptide Containing The 4e10
Epitope On Gp41
pdb|1TZG|M Chain M, Crystal Structure Of Hiv-1 Neutralizing Human Fab 4e10 In
Complex With A 13-residue Peptide Containing The 4e10
Epitope On Gp41
pdb|2FX7|L Chain L, Crystal Structure Of Hiv-1 Neutralizing Human Fab 4e10 In
Complex With A 16-Residue Peptide Encompassing The 4e10
Epitope On Gp41
pdb|2FX8|L Chain L, Crystal Structure Of Hiv-1 Neutralizing Human Fab 4e10 In
Complex With An Aib-Induced Peptide Encompassing The
4e10 Epitope On Gp41
pdb|2FX8|M Chain M, Crystal Structure Of Hiv-1 Neutralizing Human Fab 4e10 In
Complex With An Aib-Induced Peptide Encompassing The
4e10 Epitope On Gp41
pdb|2FX8|N Chain N, Crystal Structure Of Hiv-1 Neutralizing Human Fab 4e10 In
Complex With An Aib-Induced Peptide Encompassing The
4e10 Epitope On Gp41
pdb|2FX8|O Chain O, Crystal Structure Of Hiv-1 Neutralizing Human Fab 4e10 In
Complex With An Aib-Induced Peptide Encompassing The
4e10 Epitope On Gp41
pdb|2FX9|L Chain L, Crystal Structure Of Hiv-1 Neutralizing Human Fab 4e10 In
Complex With A Thioether-Linked Peptide Encompassing The
4e10 Epitope On Gp41
pdb|2FX9|M Chain M, Crystal Structure Of Hiv-1 Neutralizing Human Fab 4e10 In
Complex With A Thioether-Linked Peptide Encompassing The
4e10 Epitope On Gp41
Length = 214
Score = 27.7 bits (60), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 50/131 (38%), Gaps = 21/131 (16%)
Query: 13 PNGKLTLYMGK---RDFVDYVTGVEPIDGVVVFEEDYIQDRKVFGQVVCSFRYGREEDEI 69
P+G + G DF ++ +EP D V + + Y Q FGQ
Sbjct: 56 PSGVADRFSGSGSGTDFTLTISRLEPEDFAVYYCQQYGQSLSTFGQGT------------ 103
Query: 70 LGLNFQKELYLASEQIYPRSEKQHTSLTKMQDCLLKKLGPKAYPFTFNITPA-----APP 124
+ ++ + S I+P S++Q S T CLL P+ + + A +
Sbjct: 104 -KVEVKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQE 162
Query: 125 SVTLQPGPDET 135
SVT Q D T
Sbjct: 163 SVTEQDSKDST 173
>pdb|1IT9|L Chain L, Crystal Structure Of An Antigen-Binding Fragment From A
Humanized Version Of The Anti-Human Fas Antibody Hfe7a
Length = 214
Score = 27.7 bits (60), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 46/116 (39%), Gaps = 18/116 (15%)
Query: 25 DFVDYVTGVEPIDGVVVFEEDYIQDRKVFGQVVCSFRYGREEDEILGLNFQKELYLASEQ 84
DF ++ +EP D V + + +D + FGQ L ++ + S
Sbjct: 74 DFTLTISRLEPEDFAVYYCQQSNEDPRTFGQGT-------------KLEIKRTVAAPSVF 120
Query: 85 IYPRSEKQHTSLTKMQDCLLKKLGPKAYPFTFNITPA-----APPSVTLQPGPDET 135
I+P S++Q S T CLL P+ + + A + SVT Q D T
Sbjct: 121 IFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDST 176
>pdb|3SDY|L Chain L, Crystal Structure Of Broadly Neutralizing Antibody Cr8020
Bound To The Influenza A H3 Hemagglutinin
Length = 216
Score = 27.7 bits (60), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 45/116 (38%), Gaps = 18/116 (15%)
Query: 25 DFVDYVTGVEPIDGVVVFEEDYIQDRKVFGQVVCSFRYGREEDEILGLNFQKELYLASEQ 84
DF ++ +EP D V + + Y + FGQ + ++ + S
Sbjct: 72 DFTLTISRLEPADFAVYYCQQYGTSPRTFGQGA-------------KVEIKRTVAAPSVF 118
Query: 85 IYPRSEKQHTSLTKMQDCLLKKLGPKAYPFTFNITPA-----APPSVTLQPGPDET 135
I+P S++Q S T CLL P+ + + A + SVT Q D T
Sbjct: 119 IFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDST 174
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,957,815
Number of Sequences: 62578
Number of extensions: 371063
Number of successful extensions: 1100
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1053
Number of HSP's gapped (non-prelim): 38
length of query: 314
length of database: 14,973,337
effective HSP length: 99
effective length of query: 215
effective length of database: 8,778,115
effective search space: 1887294725
effective search space used: 1887294725
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)