Query psy2082
Match_columns 314
No_of_seqs 230 out of 568
Neff 6.4
Searched_HMMs 29240
Date Fri Aug 16 23:50:37 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2082.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2082hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ugu_A S-arrestin; arrestin fo 100.0 1E-107 3E-112 783.0 37.0 306 1-307 16-375 (380)
2 1suj_A CONE arrestin; sensory 100.0 1E-99 4E-104 737.3 39.3 302 1-304 1-355 (392)
3 1g4m_A Beta-arrestin1; sensory 100.0 5.1E-87 1.8E-91 652.1 36.3 303 3-305 4-359 (393)
4 2r51_A Vacuolar protein sortin 99.9 7.9E-21 2.7E-25 181.7 30.3 225 31-302 45-301 (340)
5 2fau_A Vacuolar protein sortin 99.8 9.1E-18 3.1E-22 160.5 32.2 225 31-302 45-301 (341)
6 2r51_A Vacuolar protein sortin 92.8 0.94 3.2E-05 42.9 11.7 93 206-301 43-157 (340)
7 2fau_A Vacuolar protein sortin 91.5 2.2 7.6E-05 40.3 12.4 91 206-299 43-155 (341)
8 2p9r_A Alpha-2-M, alpha-2-macr 89.6 0.58 2E-05 35.8 5.5 32 197-228 3-34 (102)
9 3isy_A Bsupi, intracellular pr 83.9 1.2 4.2E-05 35.9 4.6 49 191-244 2-50 (120)
10 2hr0_A Complement C3 beta chai 71.1 10 0.00035 38.1 8.1 38 190-227 100-137 (645)
11 2icn_B Prolactin-inducible pro 66.7 3.4 0.00012 33.2 2.7 61 193-255 5-65 (118)
12 2pn5_A TEP1R, thioester-contai 65.1 12 0.0004 41.1 7.5 42 187-228 91-132 (1325)
13 4fxk_A Complement C4 beta chai 55.1 16 0.00054 36.4 5.9 42 187-228 111-152 (656)
14 3vmn_A Dextranase; TIM barrel, 54.5 14 0.00048 37.7 5.3 29 198-226 9-37 (643)
15 1yew_A Particulate methane mon 54.4 9.7 0.00033 36.2 3.9 42 198-242 250-292 (382)
16 3es6_B Prolactin-inducible pro 51.3 9.7 0.00033 30.4 2.9 58 194-253 6-63 (118)
17 3rfr_A PMOB; membrane, oxidore 50.3 10 0.00034 36.5 3.3 44 197-243 283-327 (419)
18 3hrz_B Cobra venom factor; ser 46.6 29 0.00099 30.8 5.7 49 192-242 78-126 (252)
19 2bm3_A Type 2 cohesin, scaffol 46.2 27 0.00091 29.5 4.9 36 191-226 2-37 (166)
20 3hrz_A Cobra venom factor; ser 45.4 19 0.00065 36.4 4.7 39 189-227 97-135 (627)
21 3cu7_A Complement C5; Mg domai 43.7 30 0.001 39.0 6.4 40 187-226 115-154 (1676)
22 3idu_A Uncharacterized protein 43.3 49 0.0017 26.4 6.0 39 196-235 19-57 (127)
23 1ex0_A Coagulation factor XIII 40.9 2.8E+02 0.0097 28.7 12.5 44 195-243 517-560 (731)
24 1vjj_A Protein-glutamine gluta 40.9 87 0.003 32.2 8.7 46 194-243 480-525 (692)
25 2b39_A C3; thioester, immune d 37.9 52 0.0018 37.0 7.2 32 195-226 126-157 (1661)
26 4acq_A Alpha-2-macroglobulin; 34.8 77 0.0026 35.3 7.8 42 187-228 95-136 (1451)
27 2q3z_A Transglutaminase 2; tra 34.4 96 0.0033 31.9 7.8 48 195-247 472-519 (687)
28 1nnx_A Protein YGIW; structura 33.9 1.3E+02 0.0044 23.4 6.9 38 188-225 54-96 (109)
29 4fxk_B Complement C4-A alpha c 27.3 27 0.00094 35.8 2.4 42 192-235 150-191 (767)
30 3prx_B Cobra venom factor; imm 27.1 63 0.0022 36.6 5.5 41 187-227 117-157 (1642)
31 3mnm_A ADP-ribosylation factor 25.6 1.9E+02 0.0064 22.7 6.7 42 190-234 13-54 (123)
32 1kyf_A Alpha-adaptin C; protei 25.5 3.4E+02 0.012 23.7 9.9 98 187-298 22-132 (247)
33 2hr0_B Complement C3 alpha' ch 23.0 84 0.0029 33.0 5.2 43 192-236 77-120 (915)
34 1gvp_A Gene V protein; DNA-bin 22.4 30 0.001 26.2 1.2 46 97-142 28-77 (87)
35 2rqx_A PMRD, polymyxin B resis 21.7 2.3E+02 0.0078 21.2 5.8 43 191-233 21-69 (89)
36 1g0d_A Protein-glutamine gamma 21.6 1.4E+02 0.0049 30.7 6.3 45 194-243 471-515 (695)
37 2jp2_A Spred-2, sprouty-relate 20.5 32 0.0011 27.6 1.1 55 17-76 43-106 (126)
No 1
>3ugu_A S-arrestin; arrestin fold, signal termination, GPCR, outer segment, SIGN protein; 1.85A {Bos taurus} PDB: 3ugx_A 1cf1_A 1ayr_A
Probab=100.00 E-value=9.8e-108 Score=783.00 Aligned_cols=306 Identities=38% Similarity=0.695 Sum_probs=279.9
Q ss_pred CCccceEEEeecCCCcEEEEecceeeEecCCCceeeeeEEEEecceeeceeEEEEEEEeeecccccccccCccccceEEE
Q psy2082 1 MVANFKVFKKCSPNGKLTLYMGKRDFVDYVTGVEPIDGVVVFEEDYIQDRKVFGQVVCSFRYGREEDEILGLNFQKELYL 80 (314)
Q Consensus 1 ~~~~~~vfkk~s~n~~~t~yl~~rd~~d~~~~vd~v~GvV~vd~~~lk~rkv~~~~~~~fryG~~d~dv~gl~f~k~l~~ 80 (314)
|..++|||||+|||||||+||||||||||+++||||||||+|||||+||||||+||+|+|||||||+|||||+|+||||+
T Consensus 16 ~~~~~~VfKK~s~n~klt~YlgkRdfvdh~~~vdpvdGvv~vd~~~~~~rkvf~~l~~~fRYGred~dV~Gl~F~kdl~~ 95 (380)
T 3ugu_A 16 PAPNHVIFKKISRDKSVTIYLGKRDYIDHVERVEPVDGVVLVDPELVKGKRVYVSLTCAFRYGQEDIDVMGLSFRRDLYF 95 (380)
T ss_dssp ----CCCEEEECTTSSEEEEESCSEEEECSSCBCCEEEEEEECHHHHTTCEEEEEEEEEEEECC------CCCEEEEEEE
T ss_pred cCcceeEEEeeCCCCcEEEEecCceEEeecCcccccceEEEECHHHhCCCEEEEEEEEEEecCCCccccccchhhhhhhh
Confidence 67789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEecCCCCCCCCcchhhhhhhccCCCeeEeEEeeCCCCCCCeEEecCCCCCCCCCeEEEEEEEEEEccCC---ccCc
Q psy2082 81 ASEQIYPRSEKQHTSLTKMQDCLLKKLGPKAYPFTFNITPAAPPSVTLQPGPDETGEPCGVTYYVKLFVGENE---TDRS 157 (314)
Q Consensus 81 ~~~qv~p~~~~~~~~lt~lq~~l~~k~G~h~fPF~f~LP~~lPsSf~lq~~~~~~G~~g~V~Y~Vka~i~~~~---~dr~ 157 (314)
++.|+||+.+ .+++||++||||++|+|.|+|||+|+||++|||||+|||+++|.|++|+|+|+|||++++++ +|++
T Consensus 96 ~~~qvyP~~~-~~~~lT~lQe~L~kKlG~nayPF~f~LP~~lPsSv~LQp~p~d~Gk~cgV~YeVKafia~~~~~~~dk~ 174 (380)
T 3ugu_A 96 SQVQVFPPVG-ASGATTRLQESLIKKLGANTYPFLLTFPDYLPCSVMLQPAPQDVGKSCGVDFEIKAFATHSTDVEEDKI 174 (380)
T ss_dssp EEEEEESCCS-CCCCCCHHHHHHHHHHCTTEEEEEECCCSSCCCSEEECCCTTCCSCCEEEEEEEEEEEEBCCSSSSSBC
T ss_pred eeEEecCCCC-CCCCCCHHHHHHHHHhCcCceeEEEeCCCCCCCEEEeccCCccCCCccceEEEEEEEEccCcccccccc
Confidence 9999999875 45789999999999999999999999999999999999999999999999999999999987 8999
Q ss_pred cccceEEEeeeeccCCCCCCCCCCeEEEeEEEEeeCCcEEEEEEECCccccCCCeEEEEEEEEccccceeEEEEEEEEEe
Q psy2082 158 HRRSTVALGIRKIQYAPSKNGRQPCTVVRKDFMLSPGDLELEVTLDKQLYAHNEKIAVSICIRNNSNKVVKKIKAMVQQG 237 (314)
Q Consensus 158 ~K~~~v~l~irkl~~~p~~~~~~p~~e~~k~f~~s~G~l~l~asldK~~Y~pGE~I~v~v~I~N~Ssk~Vk~Ikv~L~Q~ 237 (314)
||+++++|+||++|++|...+++|+++++|+|+|++|+|+|+|+|||++|+|||+|.|+++|+|+|+++|++|+++|.|+
T Consensus 175 ~Kr~sV~L~Irklq~aP~~~~~~P~~e~~K~F~~ssGpl~L~vsLdK~~Y~pGE~I~V~v~I~N~Ssk~Vk~Ikv~L~Q~ 254 (380)
T 3ugu_A 175 PKKSSVRLLIRKVQHAPRDMGPQPRAEASWQFFMSDKPLRLAVSLSKEIYYHGEPIPVTVAVTNSTEKTVKKIKVLVEQV 254 (380)
T ss_dssp CGGGEEEEEEEEEEBCCSCCCCCCEEEEEEECTTCCCEEEEEEEESCSEEETTCCEEEEEEEEECSSSCEEEEEEEEEEE
T ss_pred cccceEEEeeeecccCCcccCCCCcceEEEEeEecCCCEEEEEEeCCccCcCCCEEEEEEEEEcCCCCeEeEEEEEEEEE
Confidence 99999999999999999988999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEecCeEEEEEEEEeec----------------------------------------c------CCCCCCCceeEE
Q psy2082 238 VDVVLFQNGQFRHSVDCVETH----------------------------------------L------ASPDPKDAFGIV 271 (314)
Q Consensus 238 ~~~~~~~~~~~~~~Va~~E~~----------------------------------------L------~~~~~~~~~~I~ 271 (314)
+++++|++++|+++||++|+. | .++..++..||.
T Consensus 255 ~~v~l~s~~~y~~~Va~~E~~epV~pgst~~k~~~l~P~l~~n~~krglALdG~lk~edtnLASsT~~~~~~~ke~~GI~ 334 (380)
T 3ugu_A 255 TNVVLYSSDYYIKTVAAEEAQEKVPPNSSLTKTLTLVPLLANNRERRGIALDGKIKHEDTNLASSTIIKEGIDKTVMGIL 334 (380)
T ss_dssp EEECSSSCCEEEEEEEEEECSCCBCTTEEEEEEEEECCCGGGCSCCTTSCBSSCTTCTTCCBCCCCCCCTTCCGGGGSEE
T ss_pred EEEEEecCCeEEEEEEEeccCCcCCCCCeEEeeEEEEEecccCCceeeEEecceeccCCCcccceeEecCCCCCcceEEE
Confidence 999999999999999998854 2 556788999999
Q ss_pred EEEEEEEEEEECCCC-----ceeEEEEeEEEecCCCCCccC
Q psy2082 272 VSYMVKVKLYLGALG-----GELSAELPFILMHPKVRLKMS 307 (314)
Q Consensus 272 VsY~vkV~l~v~~~~-----~~v~velPi~I~~p~p~~~~~ 307 (314)
|||+|+|+|.++++| +|+.+||||+||||+|+++..
T Consensus 335 VsY~VkVkl~v~~lgg~~~~sdv~~elPf~Lmhp~P~~~~~ 375 (380)
T 3ugu_A 335 VSYQIKVKLTVSGLLGELTSSEVATEVPFRLMHPQPEDPDT 375 (380)
T ss_dssp EEEEEEEEEEECCCTTCSSCEEEEEEEEEEEEBCCC-----
T ss_pred EEEEEEEEEEEecccCCccccceEEEecccccCCCCCCccc
Confidence 999999999998543 599999999999999987543
No 2
>1suj_A CONE arrestin; sensory transduction, signaling protein; 2.38A {Ambystoma tigrinum}
Probab=100.00 E-value=1e-99 Score=737.31 Aligned_cols=302 Identities=48% Similarity=0.821 Sum_probs=282.6
Q ss_pred CCccceEEEeecCCCcEEEEecceeeEecCCCceeeeeEEEEecceeeceeEEEEEEEeeecccccccccCccccceEEE
Q psy2082 1 MVANFKVFKKCSPNGKLTLYMGKRDFVDYVTGVEPIDGVVVFEEDYIQDRKVFGQVVCSFRYGREEDEILGLNFQKELYL 80 (314)
Q Consensus 1 ~~~~~~vfkk~s~n~~~t~yl~~rd~~d~~~~vd~v~GvV~vd~~~lk~rkv~~~~~~~fryG~~d~dv~gl~f~k~l~~ 80 (314)
|+.+.|||||+|||||||+||||||||||+++||||||||+||++||||||||++|+|+|||||||+|||||+|+||+|+
T Consensus 1 ~~~~~~v~kk~s~n~~~t~yl~krd~vd~~~~vd~vdGvV~vd~~~lk~rkv~~~l~~~fryGred~~v~Gl~f~kel~~ 80 (392)
T 1suj_A 1 MADGSKVYKKTCPNAKLSIYLGKRDFVDHVEHVEPVDGVVLIDPEYLKDRKVFVTLTCAFRYGRDDLDLIGMSFRKDLYS 80 (392)
T ss_dssp ----CEEEEEECTTSSEEEEESCSEEEECSSCBCCEEEEEEECTTTSSSCEEEEEEEEEEEEECCSSCCSSCEEEEEEEE
T ss_pred CCcceeEEEccCCCCeEEEEECCceEEeecCccCceeeEEEEcHHHhccceEEEEEEEeeccCCCchhcCcceEEEEEEE
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEecCCCCCCCCcchhhhhhhccCCCeeEeEEeeCCCCCCCeEEecCCCCCCCCCeEEEEEEEEEEccCCccCcccc
Q psy2082 81 ASEQIYPRSEKQHTSLTKMQDCLLKKLGPKAYPFTFNITPAAPPSVTLQPGPDETGEPCGVTYYVKLFVGENETDRSHRR 160 (314)
Q Consensus 81 ~~~qv~p~~~~~~~~lt~lq~~l~~k~G~h~fPF~f~LP~~lPsSf~lq~~~~~~G~~g~V~Y~Vka~i~~~~~dr~~K~ 160 (314)
++.|+||+.+ ..++|++|+||++++|.|+|||+|+||++|||||++||++++.|++|+|+|+|||++++++++++||+
T Consensus 81 ~~~qv~p~~~--~~~~t~lQe~Ll~~~G~h~fPFsFqLP~~lPsSf~lqp~~~~eGk~g~VrY~VKa~i~~~~~dk~~Kr 158 (392)
T 1suj_A 81 LATQVYPPET--KEPLTPLQEKLMKKLGAHAYPFCFKMGTNLPCSVTLQPGPDDTGKSCGVDFEVKAFCAENLEEKIHKR 158 (392)
T ss_dssp EEEEEESCCS--CCCCCHHHHHHHHHHCSSEEEEEECCCSSCCCCEEECCCTTCCSCCEEEEEEEEEEEESCTTSCCCGG
T ss_pred EEEEEeCCCC--CccccHHHHHhhhcccCeeEeEEeeCCCCCCCeEEeccCCccCCCceeEEEEEEEEEcCChhhccceE
Confidence 9999999983 56899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEeeeeccCCCCCCCCCCeEEEeEEEEeeCCcEEEEEEECCccccCCCeEEEEEEEEccccceeEEEEEEEEEeEEE
Q psy2082 161 STVALGIRKIQYAPSKNGRQPCTVVRKDFMLSPGDLELEVTLDKQLYAHNEKIAVSICIRNNSNKVVKKIKAMVQQGVDV 240 (314)
Q Consensus 161 ~~v~l~irkl~~~p~~~~~~p~~e~~k~f~~s~G~l~l~asldK~~Y~pGE~I~v~v~I~N~Ssk~Vk~Ikv~L~Q~~~~ 240 (314)
++++++|++++++|...+++|+++.+|+|||++|+|+|+|+|||++|+|||+|.|+++|+|+|+|+|++|+++|.|+++|
T Consensus 159 ~tv~l~ir~l~~~P~~~~~~p~~e~~k~f~~ssGpl~l~vsLdK~~Y~pGE~I~V~v~I~N~Ssk~Vk~Ikv~L~Q~~~v 238 (392)
T 1suj_A 159 NSVQLVIRKVQFAPANLGVAPKTEITRQFMLSDRPLHLEASLDKEIYYHGEPINVNVKINNTTGKIVKKIKIIVEQVTDV 238 (392)
T ss_dssp GEEEEEEEEEECCCSSCCCCCCCEEEEEEEETTEEEEEEEEESCSEEETTCCEEEEEEEEECSSSEEEEEEEEEEEEEEE
T ss_pred EEEEEeeeccccCccccCCCCeeEEEEEeEecCCCEEEEEEeCCccccCCCEEEEEEEEECCCCCcEeEEEEEEEEEEEE
Confidence 99999999999999888888999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCeEEEEEEEEeec----------------------------------------c------CCCCCCCceeEEEEE
Q psy2082 241 VLFQNGQFRHSVDCVETH----------------------------------------L------ASPDPKDAFGIVVSY 274 (314)
Q Consensus 241 ~~~~~~~~~~~Va~~E~~----------------------------------------L------~~~~~~~~~~I~VsY 274 (314)
++|++++|+++|+++|+. | .++..++++||.|||
T Consensus 239 ~l~s~~~~k~~Va~~e~~e~V~pgst~~k~~~L~P~l~~n~~k~glaldg~lk~~dTnLassti~~~~~~~~~~gI~VsY 318 (392)
T 1suj_A 239 VLFSLDKYVKTVCAEETNDTVAANSTLSKTFSVTPMLANNREKRGLALDGKLKHEDTNLASTTVIRPGMDKEVLGILVSY 318 (392)
T ss_dssp CSSSCCEEEEEEEEEECCCCBCTTEEEEEEEEECCCGGGCSCCTTCCBSSCTTBSSCCBCCCCCCCTTSCGGGGSEEEEE
T ss_pred EEecCCcEEEEEEEEecCCCcCCCCEEEEEEEEeccccCCCccceeeecccccCCCccccccccccCCCCccccceEEEE
Confidence 999999999999998743 1 122345677899999
Q ss_pred EEEEEEEECCCC-------ceeEEEEeEEEecCCCCC
Q psy2082 275 MVKVKLYLGALG-------GELSAELPFILMHPKVRL 304 (314)
Q Consensus 275 ~vkV~l~v~~~~-------~~v~velPi~I~~p~p~~ 304 (314)
+|+|+++++++| +|+.++|||+||||+|.+
T Consensus 319 ~vkVkl~v~~gg~~~~~~s~d~~velPf~L~~p~P~~ 355 (392)
T 1suj_A 319 KVKVHLVVARGGILGDLTSSDVAVELPLTLMHPKPSD 355 (392)
T ss_dssp EEEEEEEEETTSSTTCCCCEEEEEEEEEEEECCCCCC
T ss_pred EEEEEEEEcCCcccccccccCeeEEECeEEeCCCCCC
Confidence 999999998732 599999999999999987
No 3
>1g4m_A Beta-arrestin1; sensory transduction, alternative splicing, signaling protein; 1.90A {Bos taurus} SCOP: b.1.18.11 b.1.18.11 PDB: 1g4r_A 3gd1_C 1jsy_A 1zsh_A* 2wtr_A 2wtr_B 3gc3_A 3p2d_A
Probab=100.00 E-value=5.1e-87 Score=652.09 Aligned_cols=303 Identities=48% Similarity=0.857 Sum_probs=279.4
Q ss_pred ccceEEEeecCCCcEEEEecceeeEecCCCceeeeeEEEEecceeeceeEEEEEEEeeecccccccccCccccceEEEEE
Q psy2082 3 ANFKVFKKCSPNGKLTLYMGKRDFVDYVTGVEPIDGVVVFEEDYIQDRKVFGQVVCSFRYGREEDEILGLNFQKELYLAS 82 (314)
Q Consensus 3 ~~~~vfkk~s~n~~~t~yl~~rd~~d~~~~vd~v~GvV~vd~~~lk~rkv~~~~~~~fryG~~d~dv~gl~f~k~l~~~~ 82 (314)
.+.|||||+|||||||+||||||||||++++|+|+|+|+||++++|+|+||++++|+|||||+|+|+||++|+||+|+.+
T Consensus 4 ~~~~v~kk~s~n~~i~~yl~krdfvd~~~~~d~V~GvV~id~~~lk~r~v~v~l~~~frygr~~~~v~g~~f~ke~~~~~ 83 (393)
T 1g4m_A 4 KGTRVFKKASPNGKLTVYLGKRDFVDHIDLVEPVDGVVLVDPEYLKERRVYVTLTCAFRYGREDLDVLGLTFRKDLFVAN 83 (393)
T ss_dssp -CEEEEEEECTTSSCEEEESCSEEEECSSCBCCEEEEEECCHHHHTTCEEEEEEEEEEEESCTTCCCTTTCEEEEEEEEE
T ss_pred ccceeEEeeCCCCeEEEEeCCceEEEecCCCCEEEEEEEEehhHhcccEEEEEEEEEEEecCCcceecccccceeEEEEE
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCCCCCcchhhhhhhccCCCeeEeEEeeCCCCCCCeEEecCCCCCCCCCeEEEEEEEEEEccCCccCccccce
Q psy2082 83 EQIYPRSEKQHTSLTKMQDCLLKKLGPKAYPFTFNITPAAPPSVTLQPGPDETGEPCGVTYYVKLFVGENETDRSHRRST 162 (314)
Q Consensus 83 ~qv~p~~~~~~~~lt~lq~~l~~k~G~h~fPF~f~LP~~lPsSf~lq~~~~~~G~~g~V~Y~Vka~i~~~~~dr~~K~~~ 162 (314)
.|+||+.++++.+||++|++|++++|.|+|||+|+||.+|||||++||+++|.|++|+|+|+|+|+++++..+++||+++
T Consensus 84 ~~v~p~~~~~~~~lt~lqe~l~~~~G~h~fPF~f~LP~~lPsSfelq~~~~d~G~~g~IrY~Vka~i~~~~~~k~~K~~~ 163 (393)
T 1g4m_A 84 VQSFPPAPEDKKPLTRLQERLIKKLGEHAYPFTFEIPPNLPCSVTLQPGPEDTGKACGVDYEVKAFCAENLEEKIHKRNS 163 (393)
T ss_dssp EEEESCSTTSCCCCCHHHHHHHHHSCTTEEEEEECCCTTSCCCEEEECCGGGGGGCEEEEEEEEEEEESSTTSCCCGGGE
T ss_pred EEEeCCCCcccCccchhhhhhhccCCceEEEEEeeCCCCCCceEEEccccccCCCcEEEEEEEEEEEcCCcccccceEEE
Confidence 99999876566899999999999999999999999999999999999999999999999999999999988899999999
Q ss_pred EEEeeeeccCCCCCCCCCCeEEEeEEEEeeCCcEEEEEEECCccccCCCeEEEEEEEEccccceeEEEEEEEEEeEEEEE
Q psy2082 163 VALGIRKIQYAPSKNGRQPCTVVRKDFMLSPGDLELEVTLDKQLYAHNEKIAVSICIRNNSNKVVKKIKAMVQQGVDVVL 242 (314)
Q Consensus 163 v~l~irkl~~~p~~~~~~p~~e~~k~f~~s~G~l~l~asldK~~Y~pGE~I~v~v~I~N~Ssk~Vk~Ikv~L~Q~~~~~~ 242 (314)
+.+++++++++|....+++..+.+|+|||++|+|+|+|+|||++|+|||+|.++++|+|+|+++|++|+++|.|++++++
T Consensus 164 v~l~i~~l~~~p~~~~~~~~~e~~k~fc~~sG~l~l~~sldk~~Y~pGE~I~v~v~I~N~S~k~Vk~Ikv~L~Q~~~~~~ 243 (393)
T 1g4m_A 164 VRLVIRKVQYAPERPGPQPTAETTRQFLMSDKPLHLEASLDKEIYYHGEPISVNVHVTNNTNKTVKKIKISVRQYADICL 243 (393)
T ss_dssp EEEEEEEEECCCCCCSSCCCCEEEEECBSSSSCEEEEEEESCSEEETTCCEEEEEEEEECSSCCEEEEEEEEEEEEEECS
T ss_pred EEEeccccccCchhhcCCCceEEEEEEEEcCCCEEEEEEECCceEcCCCEEEEEEEEEcCCCCEEeEEEEEEEEEEEEEE
Confidence 99999999999987777788888899999999999999999999999999999999999999999999999999999999
Q ss_pred EecCeEEEEEEEEeec--------------c----CC----------------------------CCCCCceeEEEEEEE
Q psy2082 243 FQNGQFRHSVDCVETH--------------L----AS----------------------------PDPKDAFGIVVSYMV 276 (314)
Q Consensus 243 ~~~~~~~~~Va~~E~~--------------L----~~----------------------------~~~~~~~~I~VsY~v 276 (314)
|++++++++|+++|.. | ++ +..++..||.|+|+|
T Consensus 244 ~s~~~~k~~Va~~e~~~~V~~gs~~~~~~~L~P~l~p~~~~~~~aldg~lk~~dt~l~ss~ii~~~~~~~~~gi~VsY~v 323 (393)
T 1g4m_A 244 FNTAQYKCPVAMEEADDTVAPSSTFCKVYTLTPFLANNREKRGLALDGKLKHEDTNLASSTLLREGANREILGIIVSYKV 323 (393)
T ss_dssp SBCEEEEEEEEEEEECCCBCTTEEEEEEEEECCCGGGTTTCSSEEESSCTTSTTCCBCCCCCCCTTCCSGGGSEEEEEEE
T ss_pred ecCCceEEEEEEEecCCcCCCCCEEeeEEEEcCCCCCcccccceeeccccccCCcccccceeecCCCCccccceEEEEEE
Confidence 9999999999998743 1 11 123344566699999
Q ss_pred EEEEEECCC-------CceeEEEEeEEEecCCCCCc
Q psy2082 277 KVKLYLGAL-------GGELSAELPFILMHPKVRLK 305 (314)
Q Consensus 277 kV~l~v~~~-------~~~v~velPi~I~~p~p~~~ 305 (314)
+|++.++++ ++++.++|||+||||+|.++
T Consensus 324 kV~l~v~~gg~~~~~~~~~l~~~lPi~i~~p~p~~~ 359 (393)
T 1g4m_A 324 KVKLVVSRGGLLGDLASSDVAVELPFTLMHPKPKEE 359 (393)
T ss_dssp EEEEEECCC--------CEEEEEEEEEEECCCCC--
T ss_pred EEEEEecCCCcccccccccEEEEeCEEEecCCCCcc
Confidence 999999862 24999999999999999974
No 4
>2r51_A Vacuolar protein sorting-associated protein 26B; retromer, fibronectin III, arrestin domain, membrane, phosphorylation, protein transport; 2.10A {Mus musculus} PDB: 3lh9_A 3lh8_A 3lha_A
Probab=99.89 E-value=7.9e-21 Score=181.67 Aligned_cols=225 Identities=14% Similarity=0.179 Sum_probs=160.4
Q ss_pred CCceeeeeEEEEe-c---ceeeceeEEEEEEEeee--cccccccccCccccceEEEEEEEEecCCCCCCCCcchhhhhhh
Q psy2082 31 TGVEPIDGVVVFE-E---DYIQDRKVFGQVVCSFR--YGREEDEILGLNFQKELYLASEQIYPRSEKQHTSLTKMQDCLL 104 (314)
Q Consensus 31 ~~vd~v~GvV~vd-~---~~lk~rkv~~~~~~~fr--yG~~d~dv~gl~f~k~l~~~~~qv~p~~~~~~~~lt~lq~~l~ 104 (314)
..-|.|.|.|+|. . +.++.+.|.+.+.+... |.+. -.-+++-.+..++++. .|
T Consensus 45 ~~GE~VsG~V~I~~~~~~k~l~h~GIki~~~G~~e~~~~~~--------~~~~f~~~~~eL~~pG-----~L-------- 103 (340)
T 2r51_A 45 YDGETVSGKVSLSLKNPNKRLEHQGIKIEFIGQIELYYDRG--------NHHEFVSLVKDLARPG-----EI-------- 103 (340)
T ss_dssp ETBCCEEEEEEEEESSTTSCEEESCEEEEEEEEEEEGGGTT--------CCEEEEEEEEEEECSE-----EE--------
T ss_pred CCCCEEEEEEEEEECCCCCeeEEEEEEEEEEEEEEEEecCC--------CcEEEEEEEEEecCCC-----cc--------
Confidence 3459999999999 6 67888999998887653 2221 1223444556666543 12
Q ss_pred ccCCCeeEeEEeeCCCCCCCeEEecCCCCCCCCCeEEEEEEEEEEccCCccCccccce-E--EEeeeeccCCCCCCCCCC
Q psy2082 105 KKLGPKAYPFTFNITPAAPPSVTLQPGPDETGEPCGVTYYVKLFVGENETDRSHRRST-V--ALGIRKIQYAPSKNGRQP 181 (314)
Q Consensus 105 ~k~G~h~fPF~f~LP~~lPsSf~lq~~~~~~G~~g~V~Y~Vka~i~~~~~dr~~K~~~-v--~l~irkl~~~p~~~~~~p 181 (314)
.+|.| |||+|+||..+|+||+ |++|+|||.|||.+ +|+|+ +. . .+.+...+-.|... .+-
T Consensus 104 -~~G~~-fpF~F~lp~~l~eSy~--------G~~g~IrY~vkv~i-----~Rp~~-di~~~~eF~V~~~~~~p~~~-~pI 166 (340)
T 2r51_A 104 -TQSQA-FDFEFTHVEKPYESYT--------GQNVKLRYFLRATI-----SRRLN-DVVKEMDIVVHTLSTYPELN-SSI 166 (340)
T ss_dssp -CSCEE-EEEEECSBCCCSCCEE--------CSSEEEEEEEEEEE-----CCSSC-CEEEEEEEEEECCCCCCCCC-CCE
T ss_pred -CCCcE-EeeEeCCCCCCCcCeE--------eeeEEEEEEEEEEE-----EecCC-CceEEEEEEEEeCCCCCccC-CCE
Confidence 38999 9999999999999999 99999999999995 88898 63 2 23333333223221 111
Q ss_pred eEEEeEEEEeeCCcEEEEEEECCccccCCCeEEEEEEEEccccceeEEEEEEEEEeEEEEEEecCeE---EEEEEEEeec
Q psy2082 182 CTVVRKDFMLSPGDLELEVTLDKQLYAHNEKIAVSICIRNNSNKVVKKIKAMVQQGVDVVLFQNGQF---RHSVDCVETH 258 (314)
Q Consensus 182 ~~e~~k~f~~s~G~l~l~asldK~~Y~pGE~I~v~v~I~N~Ssk~Vk~Ikv~L~Q~~~~~~~~~~~~---~~~Va~~E~~ 258 (314)
..++ ++. .-+++++.+||.+|.+||.|.-.+.+. .|+..|+.|+++|+|..++.. ...+ +.++++.|.-
T Consensus 167 k~Ev----gi~-~cl~Ie~~~~ks~y~lgd~I~G~I~f~-~s~i~Ik~iel~LiR~Et~~~--~~~~~~e~~~i~k~eIm 238 (340)
T 2r51_A 167 KMEV----GIE-DCLHIEFEYNKSKYHLKDVIVGKIYFL-LVRIKIKHMEIDIIKRETTGT--GPNVYHENDTIAKYEIM 238 (340)
T ss_dssp EEEE----EET-TTEEEEEEESCSEEETTCEEEEEEEEE-EECSCEEEEEEEEEEEEEEEE--TTEEEEEEEEEEEEEEE
T ss_pred eccc----cCC-ceEEEEEEECcccccCCCeEEEEEEEE-EeeceeEEEEEEEEEEEEEec--CCCeeEEEEEEEEEEEe
Confidence 2332 221 128999999999999999999888887 778999999999999987753 2222 2356554421
Q ss_pred ---------------c----CCCCCCC-ceeEEEEEEEEEEEEECCCCceeEEEEeEEEecCCC
Q psy2082 259 ---------------L----ASPDPKD-AFGIVVSYMVKVKLYLGALGGELSAELPFILMHPKV 302 (314)
Q Consensus 259 ---------------L----~~~~~~~-~~~I~VsY~vkV~l~v~~~~~~v~velPi~I~~p~p 302 (314)
| .+|+..+ |..|.|+|.|.+.+..++ +......+||+|..-.+
T Consensus 239 dG~p~rge~IPirl~Lp~~~l~PT~~~~~~~fsV~Y~Lnlvl~~e~-~~~~~kq~pI~L~R~~~ 301 (340)
T 2r51_A 239 DGAPVRGESIPIRLFLAGYELTPTMRDINKKFSVRYYLNLVLIDEE-ERRYFKQQEVVLWRKGD 301 (340)
T ss_dssp ESCCCTTCEEEEEEEGGGSCCCCCEEEETTTEEEEEEEEEEEEETT-CCEEEEEEEEEEECCC-
T ss_pred cCCccCCCEEEEEEECCCCCCCCCccccCCeEEEEEEEEEEEEeCC-CcEEEEEeeEEEEECCC
Confidence 2 2444433 778999999999999987 46999999999998665
No 5
>2fau_A Vacuolar protein sorting 26; arrestin, retromer, protein transport; HET: CAF; 2.10A {Homo sapiens}
Probab=99.83 E-value=9.1e-18 Score=160.49 Aligned_cols=225 Identities=15% Similarity=0.153 Sum_probs=154.8
Q ss_pred CCceeeeeEEEEec-c---eeeceeEEEEEEEeee--cccccccccCccccceEEEEEEEEecCCCCCCCCcchhhhhhh
Q psy2082 31 TGVEPIDGVVVFEE-D---YIQDRKVFGQVVCSFR--YGREEDEILGLNFQKELYLASEQIYPRSEKQHTSLTKMQDCLL 104 (314)
Q Consensus 31 ~~vd~v~GvV~vd~-~---~lk~rkv~~~~~~~fr--yG~~d~dv~gl~f~k~l~~~~~qv~p~~~~~~~~lt~lq~~l~ 104 (314)
..-|.|.|.|.|+. + .++.+.|.+.+.+... |.+- -..+++-.+.+++++.. |
T Consensus 45 ~~GE~VsG~V~I~~~~~gk~l~h~GIki~~~G~~e~~~~~~--------~~~~fls~~~eL~~~G~-----L-------- 103 (341)
T 2fau_A 45 YDGESVSGKVNLAFKQPGKRLEHQGIRIEFVGQIELFNDKS--------NTHEFVNLVKELALPGE-----L-------- 103 (341)
T ss_dssp CTTCCEEEEEEEEESSSSCCEEESCEEEEEEEEEEECSTTC--------CEEEEEEEEEEEECSEE-----E--------
T ss_pred CCCCEEEEEEEEEECCCCCeeeEEEEEEEEEEEEEEEecCC--------CcEEEEEEEEEEcCCCc-----c--------
Confidence 45599999999994 4 7888889998877663 2210 12334455667766531 1
Q ss_pred ccCCCeeEeEEeeCCCCCCCeEEecCCCCCCCCCeEEEEEEEEEEccCCccCccccce-EE--EeeeeccCCCCCCCCCC
Q psy2082 105 KKLGPKAYPFTFNITPAAPPSVTLQPGPDETGEPCGVTYYVKLFVGENETDRSHRRST-VA--LGIRKIQYAPSKNGRQP 181 (314)
Q Consensus 105 ~k~G~h~fPF~f~LP~~lPsSf~lq~~~~~~G~~g~V~Y~Vka~i~~~~~dr~~K~~~-v~--l~irkl~~~p~~~~~~p 181 (314)
.+| |.|||+|++|+.+|+||+ |.++.|||.|||.+ +|+|+ |. .. +.+..++-.|... .|
T Consensus 104 -~~g-~~fpF~F~~~~~~~eSy~--------G~~~~IrY~vrv~i-----~R~~~-di~~~~eF~V~~~~~~p~~~--~p 165 (341)
T 2fau_A 104 -TQS-RSYDFEFMQVEKPYESYI--------GANVRLRYFLKVTI-----VRRLT-DLVKEYDLIVHQLATYPDVN--NS 165 (341)
T ss_dssp -CSC-EEEEEEECSCCCCSCCEE--------CSSEEEEEEEEEEE-----CCSSS-CEEEEEEEEECCCBCCCCCC--CC
T ss_pred -CCC-cEEeeEeCCCCCCCcceE--------eeEEEEEEEEEEEE-----EecCc-ceeEEEEEEEEeCCCCCCCC--CC
Confidence 388 999999999999999999 99999999999995 88998 63 23 3333332222211 12
Q ss_pred -eEEEeEEEEeeCCcEEEEEEECCccccCCCeEEEEEEEEccccceeEEEEEEEEEeEEEEEEecCeE--EEEEEEEeec
Q psy2082 182 -CTVVRKDFMLSPGDLELEVTLDKQLYAHNEKIAVSICIRNNSNKVVKKIKAMVQQGVDVVLFQNGQF--RHSVDCVETH 258 (314)
Q Consensus 182 -~~e~~k~f~~s~G~l~l~asldK~~Y~pGE~I~v~v~I~N~Ssk~Vk~Ikv~L~Q~~~~~~~~~~~~--~~~Va~~E~~ 258 (314)
..+.. -++++++++.++|..|.+||+|..++.+. .|+..|+.|+++|+|..++..-.+ ++ ..++++.|.-
T Consensus 166 i~~evg-----ied~L~ieF~~~ks~y~l~d~I~G~I~f~-~s~i~Ik~iel~LiR~Et~~~~~~-~~~e~~~i~k~eIm 238 (341)
T 2fau_A 166 IKMEVG-----IEDXLHIEFEYNKSKYHLKDVIVGKIYFL-LVRIKIQHMELQLIKKEITGIGPS-TTTETETIAKYEIM 238 (341)
T ss_dssp EEEEEE-----ETTTEEEEEEESCSEEETTCEEEEEEEEE-EECSCEEEEEEEEEEEEEESCGGG-CEEEEEEEEEEECC
T ss_pred eEEEEe-----ccccEEEEEEEccccccCCCeEEEEEEEE-EeccceEEEEEEEEEEEEEcCCCC-eeeEEEEEEEEEEe
Confidence 22221 15779999999999999999999988888 688999999999999987643211 22 2355554431
Q ss_pred ---------------c----CCCCCC-CceeEEEEEEEEEEEEECCCCceeEEEEeEEEecCCC
Q psy2082 259 ---------------L----ASPDPK-DAFGIVVSYMVKVKLYLGALGGELSAELPFILMHPKV 302 (314)
Q Consensus 259 ---------------L----~~~~~~-~~~~I~VsY~vkV~l~v~~~~~~v~velPi~I~~p~p 302 (314)
| .+|+.. .|..+.|+|.|.|.+...+ +.......-|+|..-.+
T Consensus 239 DG~p~rge~IPirl~Lp~~~l~PT~~~~~~~fsV~Y~Lnlvlvde~-~rryfk~~EI~L~R~~~ 301 (341)
T 2fau_A 239 DGAPVKGESIPIRLFLAGYDPTPTMRDVNKKFSVRYFLNLVLVDEE-DRRYFKQQEIILWRKAP 301 (341)
T ss_dssp CC------CEEEEEESTTTCCCCCEEEEETTEEEEEEEEEEEEETT-CCEEEEEEEEEEECBCC
T ss_pred CCCccCCCEEEEEEEcCCCCCCCcchhcCCeEEEEEEEEEEEEeCC-CCeeeeeeEEEEEECCC
Confidence 2 234432 2557999999999998865 22344444477776444
No 6
>2r51_A Vacuolar protein sorting-associated protein 26B; retromer, fibronectin III, arrestin domain, membrane, phosphorylation, protein transport; 2.10A {Mus musculus} PDB: 3lh9_A 3lh8_A 3lha_A
Probab=92.83 E-value=0.94 Score=42.88 Aligned_cols=93 Identities=11% Similarity=0.197 Sum_probs=60.3
Q ss_pred cccCCCeEEEEEEEEcc---ccceeEEEEEEEEEeEEEEEEecCe---EEEEEEEE--------------eeccCCCCCC
Q psy2082 206 LYAHNEKIAVSICIRNN---SNKVVKKIKAMVQQGVDVVLFQNGQ---FRHSVDCV--------------ETHLASPDPK 265 (314)
Q Consensus 206 ~Y~pGE~I~v~v~I~N~---Ssk~Vk~Ikv~L~Q~~~~~~~~~~~---~~~~Va~~--------------E~~L~~~~~~ 265 (314)
+|++||+|.=.|.|+.. .....+.|++.+.-.++.. +..+. |-.....+ +..|+.....
T Consensus 43 vY~~GE~VsG~V~I~~~~~~k~l~h~GIki~~~G~~e~~-~~~~~~~~f~~~~~eL~~pG~L~~G~~fpF~F~lp~~l~e 121 (340)
T 2r51_A 43 LFYDGETVSGKVSLSLKNPNKRLEHQGIKIEFIGQIELY-YDRGNHHEFVSLVKDLARPGEITQSQAFDFEFTHVEKPYE 121 (340)
T ss_dssp EEETBCCEEEEEEEEESSTTSCEEESCEEEEEEEEEEEG-GGTTCCEEEEEEEEEEECSEEECSCEEEEEEECSBCCCSC
T ss_pred cCCCCCEEEEEEEEEECCCCCeeEEEEEEEEEEEEEEEE-ecCCCcEEEEEEEEEecCCCccCCCcEEeeEeCCCCCCCc
Confidence 79999999999999888 6677899999998765432 11111 11111111 1113221111
Q ss_pred Cce--eEEEEEEEEEEEEECCCCceeEEEEeEEEecCC
Q psy2082 266 DAF--GIVVSYMVKVKLYLGALGGELSAELPFILMHPK 301 (314)
Q Consensus 266 ~~~--~I~VsY~vkV~l~v~~~~~~v~velPi~I~~p~ 301 (314)
.-. -..|.|.|+|.+.-++ . ++..+.+|++....
T Consensus 122 Sy~G~~g~IrY~vkv~i~Rp~-~-di~~~~eF~V~~~~ 157 (340)
T 2r51_A 122 SYTGQNVKLRYFLRATISRRL-N-DVVKEMDIVVHTLS 157 (340)
T ss_dssp CEECSSEEEEEEEEEEECCSS-C-CEEEEEEEEEECCC
T ss_pred CeEeeeEEEEEEEEEEEEecC-C-CceEEEEEEEEeCC
Confidence 222 3799999999887766 3 99999999998643
No 7
>2fau_A Vacuolar protein sorting 26; arrestin, retromer, protein transport; HET: CAF; 2.10A {Homo sapiens}
Probab=91.47 E-value=2.2 Score=40.32 Aligned_cols=91 Identities=13% Similarity=0.199 Sum_probs=58.3
Q ss_pred cccCCCeEEEEEEEEccc---cceeEEEEEEEEEeEEEEEEecCe---EEEEEEEEe--------------eccCCCCCC
Q psy2082 206 LYAHNEKIAVSICIRNNS---NKVVKKIKAMVQQGVDVVLFQNGQ---FRHSVDCVE--------------THLASPDPK 265 (314)
Q Consensus 206 ~Y~pGE~I~v~v~I~N~S---sk~Vk~Ikv~L~Q~~~~~~~~~~~---~~~~Va~~E--------------~~L~~~~~~ 265 (314)
+|++||+|.=.|.|+... .-..+.|++.+.-.++.. +..+. |-+....+. ..+++....
T Consensus 43 vY~~GE~VsG~V~I~~~~~gk~l~h~GIki~~~G~~e~~-~~~~~~~~fls~~~eL~~~G~L~~g~~fpF~F~~~~~~~e 121 (341)
T 2fau_A 43 LFYDGESVSGKVNLAFKQPGKRLEHQGIRIEFVGQIELF-NDKSNTHEFVNLVKELALPGELTQSRSYDFEFMQVEKPYE 121 (341)
T ss_dssp EECTTCCEEEEEEEEESSSSCCEEESCEEEEEEEEEEEC-STTCCEEEEEEEEEEEECSEEECSCEEEEEEECSCCCCSC
T ss_pred cCCCCCEEEEEEEEEECCCCCeeeEEEEEEEEEEEEEEE-ecCCCcEEEEEEEEEEcCCCccCCCcEEeeEeCCCCCCCc
Confidence 899999999999999874 346799999997766542 21111 111111111 002222112
Q ss_pred Ccee--EEEEEEEEEEEEECCCCceeEEEEeEEEec
Q psy2082 266 DAFG--IVVSYMVKVKLYLGALGGELSAELPFILMH 299 (314)
Q Consensus 266 ~~~~--I~VsY~vkV~l~v~~~~~~v~velPi~I~~ 299 (314)
.-.| ..|.|.|+|.+.-++ . |+..+.+|++..
T Consensus 122 Sy~G~~~~IrY~vrv~i~R~~-~-di~~~~eF~V~~ 155 (341)
T 2fau_A 122 SYIGANVRLRYFLKVTIVRRL-T-DLVKEYDLIVHQ 155 (341)
T ss_dssp CEECSSEEEEEEEEEEECCSS-S-CEEEEEEEEECC
T ss_pred ceEeeEEEEEEEEEEEEEecC-c-ceeEEEEEEEEe
Confidence 2223 799999999887766 3 999999999875
No 8
>2p9r_A Alpha-2-M, alpha-2-macroglobulin; human alpha2-macroglobulin, Mg2 domain, X-RAY, signaling protein; 2.30A {Homo sapiens}
Probab=89.58 E-value=0.58 Score=35.79 Aligned_cols=32 Identities=13% Similarity=0.222 Sum_probs=26.9
Q ss_pred EEEEEECCccccCCCeEEEEEEEEccccceeE
Q psy2082 197 ELEVTLDKQLYAHNEKIAVSICIRNNSNKVVK 228 (314)
Q Consensus 197 ~l~asldK~~Y~pGE~I~v~v~I~N~Ssk~Vk 228 (314)
.+-+..||.+|.|||+|.+.+-+.|...+...
T Consensus 3 ~~fi~tDr~iYrPGetV~~~~~~~~~~~~p~~ 34 (102)
T 2p9r_A 3 LVFVQTDKSIYKPGQTVKFRVVSMDENFHPLN 34 (102)
T ss_dssp EEEEEESCSEECTTCEEEEEEEEECGGGCBCC
T ss_pred eEEEECCCcccCCCCEEEEEEEEECCCCcCCC
Confidence 35678999999999999999999988766554
No 9
>3isy_A Bsupi, intracellular proteinase inhibitor; intracellular proteinase inhibitor bsupi, beta sandwich, GRE structural genomics; HET: PG4; 2.61A {Bacillus subtilis}
Probab=83.89 E-value=1.2 Score=35.90 Aligned_cols=49 Identities=14% Similarity=0.373 Sum_probs=39.9
Q ss_pred eeCCcEEEEEEECCccccCCCeEEEEEEEEccccceeEEEEEEEEEeEEEEEEe
Q psy2082 191 LSPGDLELEVTLDKQLYAHNEKIAVSICIRNNSNKVVKKIKAMVQQGVDVVLFQ 244 (314)
Q Consensus 191 ~s~G~l~l~asldK~~Y~pGE~I~v~v~I~N~Ssk~Vk~Ikv~L~Q~~~~~~~~ 244 (314)
|..|.|.++++-++ .|+.+.+.+.|.|.|+..+. +...=-|..++.++.
T Consensus 2 ~~~~~l~~~v~~~~----~g~~v~~~ltv~N~s~~~v~-l~f~Sgq~~Df~v~d 50 (120)
T 3isy_A 2 MENQEVVLSIDAIQ----EPEQIKFNMSLKNQSERAIE-FQFSTGQKFELVVYD 50 (120)
T ss_dssp --CCSEEEEEEEEE----CSSCEEEEEEEEECSSSCEE-EEESSSCCEEEEEEC
T ss_pred ccccEEEEEEeecc----CCCeEEEEEEEEcCCCCcEE-EEeCCCCEEEEEEEC
Confidence 45788999998888 89999999999999999977 566666777887774
No 10
>2hr0_A Complement C3 beta chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2i07_A* 2wii_A* 2win_A* 2xwj_A* 3l3o_A* 3l5n_A* 3nms_A* 3nsa_A* 3ohx_A* 3t4a_A 2a74_A* 2a73_A* 2qki_A* 3g6j_A 2ice_A* 2icf_A* 2xwb_A*
Probab=71.11 E-value=10 Score=38.13 Aligned_cols=38 Identities=21% Similarity=0.180 Sum_probs=28.2
Q ss_pred EeeCCcEEEEEEECCccccCCCeEEEEEEEEcccccee
Q psy2082 190 MLSPGDLELEVTLDKQLYAHNEKIAVSICIRNNSNKVV 227 (314)
Q Consensus 190 ~~s~G~l~l~asldK~~Y~pGE~I~v~v~I~N~Ssk~V 227 (314)
+++.....+-+..||.+|.|||+|.+.+-+.|...+.+
T Consensus 100 ~~~~~~~~~fi~TDR~iYrPGqtV~~r~i~~d~~~~p~ 137 (645)
T 2hr0_A 100 LVSLQSGYLFIQTDKTIYTPGSTVLYRIFTVNHKLLPV 137 (645)
T ss_dssp EEECCCCEEEEEESCSBCCTTSEEEEEEEEECTTSCBC
T ss_pred EEecCCccEEEEcCCccCCCCCEEEEEEEEECCCCccc
Confidence 33334445678899999999999998888777665543
No 11
>2icn_B Prolactin-inducible protein; beta-pleated sheet, complex, seminal fluid; HET: NAG BMA MAN P6G; 3.23A {Homo sapiens} PDB: 3es6_B*
Probab=66.73 E-value=3.4 Score=33.17 Aligned_cols=61 Identities=7% Similarity=0.095 Sum_probs=47.2
Q ss_pred CCcEEEEEEECCccccCCCeEEEEEEEEccccceeEEEEEEEEEeEEEEEEecCeEEEEEEEE
Q psy2082 193 PGDLELEVTLDKQLYAHNEKIAVSICIRNNSNKVVKKIKAMVQQGVDVVLFQNGQFRHSVDCV 255 (314)
Q Consensus 193 ~G~l~l~asldK~~Y~pGE~I~v~v~I~N~Ssk~Vk~Ikv~L~Q~~~~~~~~~~~~~~~Va~~ 255 (314)
..|+.++.+||..+ ..||...+.++|-|.=++-|. |++.|....+|.+-.+.+|+.+++.-
T Consensus 5 ~qPffveltlPySv-~rgE~f~lkatVfNyL~~Ci~-V~v~L~~S~~~~~~~~~~~s~ClC~~ 65 (118)
T 2icn_B 5 RKIIIKNFDIPKSV-RPNDEVTAVLAVQTELKECMV-VKTYLISSIPLQGAFNYKYTACLCDD 65 (118)
T ss_dssp CCCSEECCCCCSEE-CSSCCEEEEEEEEECCSSCEE-EEEEEEESSCCCGGGGCEEEEEECSS
T ss_pred cCCEEEEEeCCCcc-cCCCEEEEEEEEEeccCcCEE-EEEEEcCCCCeEeecCCcCCEEECCC
Confidence 35677888898865 899999999999999988887 88888877766653345566666543
No 12
>2pn5_A TEP1R, thioester-containing protein I; FULL-length mature peptide, immune system; HET: NAG; 2.70A {Anopheles gambiae}
Probab=65.06 E-value=12 Score=41.12 Aligned_cols=42 Identities=7% Similarity=0.203 Sum_probs=33.3
Q ss_pred EEEEeeCCcEEEEEEECCccccCCCeEEEEEEEEccccceeE
Q psy2082 187 KDFMLSPGDLELEVTLDKQLYAHNEKIAVSICIRNNSNKVVK 228 (314)
Q Consensus 187 k~f~~s~G~l~l~asldK~~Y~pGE~I~v~v~I~N~Ssk~Vk 228 (314)
+...++.....+-+..||.+|.|||+|.+.+-+.|...+.+.
T Consensus 91 ~~v~~~~~~~~~fi~TDr~iYrPGqtV~~r~~~~~~~~~p~~ 132 (1325)
T 2pn5_A 91 AELVYLSKSISGLIQVDKPVFKPGDTVNFRVIVLDTELKPPA 132 (1325)
T ss_dssp EEEEECSCSEEEEEEESCSEECTTCEEEEEEEEEETTSSCCS
T ss_pred EEEEEEcccccEEEecCCCccCCCCEEEEEEEEecCCccccc
Confidence 455666667778889999999999999998888877766543
No 13
>4fxk_A Complement C4 beta chain; immune system, proteolytic cascade; HET: NAG BMA; 3.60A {Homo sapiens} PDB: 4fxg_A*
Probab=55.12 E-value=16 Score=36.41 Aligned_cols=42 Identities=10% Similarity=0.209 Sum_probs=31.5
Q ss_pred EEEEeeCCcEEEEEEECCccccCCCeEEEEEEEEccccceeE
Q psy2082 187 KDFMLSPGDLELEVTLDKQLYAHNEKIAVSICIRNNSNKVVK 228 (314)
Q Consensus 187 k~f~~s~G~l~l~asldK~~Y~pGE~I~v~v~I~N~Ssk~Vk 228 (314)
+...++...-.+=++.||.+|.|||+|.+.+-+.|..-+...
T Consensus 111 ~~v~~~~~~~~vFIqTDr~iYrPGqtV~~r~i~~d~~~~p~~ 152 (656)
T 4fxk_A 111 INLLFSSRRGHLFLQTDQPIYNPGQRVRYRVFALDQKMRPST 152 (656)
T ss_dssp EEEEECCCCSEEEEEESCSEECTTCEEEEEEEEECSSSSBCC
T ss_pred eEEEEeccCccEEEECCCCCcCCCCEEEEEEEEECCccCcCc
Confidence 344454444456678999999999999999988887766544
No 14
>3vmn_A Dextranase; TIM barrel, immunoglobrin fold, greek-KEY-motif, glycoside H family 66, hydrolase; 1.60A {Streptococcus mutans} PDB: 3vmo_A* 3vmp_A*
Probab=54.46 E-value=14 Score=37.73 Aligned_cols=29 Identities=21% Similarity=0.480 Sum_probs=25.9
Q ss_pred EEEEECCccccCCCeEEEEEEEEccccce
Q psy2082 198 LEVTLDKQLYAHNEKIAVSICIRNNSNKV 226 (314)
Q Consensus 198 l~asldK~~Y~pGE~I~v~v~I~N~Ssk~ 226 (314)
..++.||..|.|||.+.+++++.|.+.+.
T Consensus 9 ~~v~tDKA~Y~PGe~V~l~~~l~n~t~~~ 37 (643)
T 3vmn_A 9 INLTTDKAVYQAGEAVHLNLTLNNTTSLA 37 (643)
T ss_dssp CCCEESCSSBCTTSCEEEECEEECCSSSC
T ss_pred eeeeccccccCCCCeEEEEEEEecccCcc
Confidence 45779999999999999999999988764
No 15
>1yew_A Particulate methane monooxygenase, B subunit; membrane protein, beta barrel, oxidoreductase; 2.80A {Methylococcus capsulatus} PDB: 3rgb_A
Probab=54.43 E-value=9.7 Score=36.24 Aligned_cols=42 Identities=14% Similarity=0.249 Sum_probs=31.4
Q ss_pred EEEEECCccc-cCCCeEEEEEEEEccccceeEEEEEEEEEeEEEEE
Q psy2082 198 LEVTLDKQLY-AHNEKIAVSICIRNNSNKVVKKIKAMVQQGVDVVL 242 (314)
Q Consensus 198 l~asldK~~Y-~pGE~I~v~v~I~N~Ssk~Vk~Ikv~L~Q~~~~~~ 242 (314)
+++.+.+..| +||-++.++++|+|++++.|+ +.=.+.+.+++
T Consensus 250 V~~~v~~A~Y~vpgR~l~~~~~VtN~g~~pvr---lgeF~tA~vrF 292 (382)
T 1yew_A 250 VSVKVEDATYRVPGRAMRMKLTITNHGNSPIR---LGEFYTASVRF 292 (382)
T ss_dssp EEEEEEEEEEESSCSEEEEEEEEEECSSSCEE---EEEEECSSCEE
T ss_pred eEEEeeccEEecCCcEEEEEEEEEcCCCCceE---eeeEEeccEEE
Confidence 4455556666 999999999999999999865 44456666654
No 16
>3es6_B Prolactin-inducible protein; major histocompatibility complex, protein-protein complex, P inducible protein, zinc 2-glycoprotein, ZAG-PIP complex; HET: NDG NAG BMA MAN P6G; 3.23A {Homo sapiens} SCOP: b.1.18.23
Probab=51.29 E-value=9.7 Score=30.35 Aligned_cols=58 Identities=7% Similarity=0.123 Sum_probs=41.6
Q ss_pred CcEEEEEEECCccccCCCeEEEEEEEEccccceeEEEEEEEEEeEEEEEEecCeEEEEEE
Q psy2082 194 GDLELEVTLDKQLYAHNEKIAVSICIRNNSNKVVKKIKAMVQQGVDVVLFQNGQFRHSVD 253 (314)
Q Consensus 194 G~l~l~asldK~~Y~pGE~I~v~v~I~N~Ssk~Vk~Ikv~L~Q~~~~~~~~~~~~~~~Va 253 (314)
.++.++.+||.. ...||.+.+.+.|-|.-+..+. +++.|.-..++.+-.+.+++.+|+
T Consensus 6 k~~~~~l~lPys-v~rgE~~~~~~~V~nyl~~~~~-v~v~L~~s~~~~~~~~~~~t~Clc 63 (118)
T 3es6_B 6 KIIIKNFDIPKS-VRPNDEVTAVLAVQTELKECMV-VKTYLISSIPLQGAFNYKYTACLC 63 (118)
T ss_dssp CCCEECCCCCSE-ECSSCCEEEEEEEEECCSSCEE-EEEEEEESSCCCSGGGCEEEEEEC
T ss_pred ceEEEEeeCCce-EecCCEEEEEEEEEecccceEE-EEEEecCCcCEEccCCCcccEEec
Confidence 566777888864 4689999999999999988766 677776555554433455555554
No 17
>3rfr_A PMOB; membrane, oxidoreductase; 2.68A {Methylocystis SP} PDB: 3chx_A
Probab=50.34 E-value=10 Score=36.54 Aligned_cols=44 Identities=9% Similarity=0.305 Sum_probs=33.8
Q ss_pred EEEEEECCccc-cCCCeEEEEEEEEccccceeEEEEEEEEEeEEEEEE
Q psy2082 197 ELEVTLDKQLY-AHNEKIAVSICIRNNSNKVVKKIKAMVQQGVDVVLF 243 (314)
Q Consensus 197 ~l~asldK~~Y-~pGE~I~v~v~I~N~Ssk~Vk~Ikv~L~Q~~~~~~~ 243 (314)
.+++.+.+..| +||-++.++++|+|++++.|+ +.=.|.+.+++-
T Consensus 283 ~V~~~v~~A~Y~vpgR~l~~~~~VtN~g~~pvr---lgeF~tA~vrFl 327 (419)
T 3rfr_A 283 QVTTELNGGVYKVPGRELTINVKVKNGTSQPVR---LGEYTAAGLRFL 327 (419)
T ss_dssp CCEEEEEEEEEESSSSEEEEEEEEECCSSSCBE---EEEEECSSCEEE
T ss_pred ceEEEEeceEEecCCcEEEEEEEEecCCCCceE---EeeEEEccEEEe
Confidence 36666777777 899999999999999999973 445566666543
No 18
>3hrz_B Cobra venom factor; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Naja kaouthia} PDB: 3frp_G* 3hs0_B*
Probab=46.56 E-value=29 Score=30.82 Aligned_cols=49 Identities=8% Similarity=0.120 Sum_probs=37.7
Q ss_pred eCCcEEEEEEECCccccCCCeEEEEEEEEccccceeEEEEEEEEEeEEEEE
Q psy2082 192 SPGDLELEVTLDKQLYAHNEKIAVSICIRNNSNKVVKKIKAMVQQGVDVVL 242 (314)
Q Consensus 192 s~G~l~l~asldK~~Y~pGE~I~v~v~I~N~Ssk~Vk~Ikv~L~Q~~~~~~ 242 (314)
...|+.++.+||.. ...||.+.+.+.|-|+.++.++ +++.|...-.+++
T Consensus 78 v~kpffv~~~LP~s-v~rGE~~~l~~~V~Ny~~~~~~-v~V~l~~~~~~~~ 126 (252)
T 3hrz_B 78 VMKVFFIDLQMPYS-VVKNEQVEIRAILHNYVNEDIY-VRVELLYNPAFCS 126 (252)
T ss_dssp BCCSEEEEECCCSC-EETTCCEEEEEEEEECSSSCEE-EEEEECCCTTEEE
T ss_pred EECCEEEEcCCCcE-EeeCCEEEEEEEEEcccCceEE-EEEEEEcCCceEe
Confidence 34677888999985 5689999999999999998866 6777765434444
No 19
>2bm3_A Type 2 cohesin, scaffolding dockerin binding protein A; cellulosome, nuclear protein; 1.8A {Clostridium thermocellum} SCOP: b.2.2.2
Probab=46.22 E-value=27 Score=29.45 Aligned_cols=36 Identities=17% Similarity=0.145 Sum_probs=29.5
Q ss_pred eeCCcEEEEEEECCccccCCCeEEEEEEEEccccce
Q psy2082 191 LSPGDLELEVTLDKQLYAHNEKIAVSICIRNNSNKV 226 (314)
Q Consensus 191 ~s~G~l~l~asldK~~Y~pGE~I~v~v~I~N~Ssk~ 226 (314)
++++.-.+++.|||+.-.-||.|..++.|+|-++-.
T Consensus 2 ~a~~~~~I~~~lDKT~~~VGdII~Atv~vnnI~nfA 37 (166)
T 2bm3_A 2 ASDKASSIELKFDRNKGEVGDILIGTVRINNIKNFA 37 (166)
T ss_dssp ---CCCEEEEEESCSCCCTTCEEEEEEEEESCTTEE
T ss_pred CcCCCCeEEEEecCcceeeCCEEEEEEEEccccccc
Confidence 456677889999999999999999999999988643
No 20
>3hrz_A Cobra venom factor; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Naja kaouthia} PDB: 3frp_A* 3hs0_A*
Probab=45.41 E-value=19 Score=36.43 Aligned_cols=39 Identities=15% Similarity=0.195 Sum_probs=25.8
Q ss_pred EEeeCCcEEEEEEECCccccCCCeEEEEEEEEcccccee
Q psy2082 189 FMLSPGDLELEVTLDKQLYAHNEKIAVSICIRNNSNKVV 227 (314)
Q Consensus 189 f~~s~G~l~l~asldK~~Y~pGE~I~v~v~I~N~Ssk~V 227 (314)
.+++...-.+=+..||.+|.|||++.+.+-..|...+.+
T Consensus 97 v~v~~~~~~~fi~TDr~iYrPGqtV~~r~i~~d~~~~p~ 135 (627)
T 3hrz_A 97 VLLSYQSSFLFIQTDKGIYTPGSPVLYRVFSMDHNTSKM 135 (627)
T ss_dssp EEEECCCSCEEEEESCSEECTTCEECEEEEESCC-----
T ss_pred EEEEcCCCcEEEECCCCccCCCCEEEEEEEEECCCCccc
Confidence 344444444567799999999999999888887665544
No 21
>3cu7_A Complement C5; Mg domain, inflammation, anaphylatoxin, cleavage of basic residues, complement alternate pathway, glycoprotein, immune response; HET: NAG; 3.10A {Homo sapiens} PDB: 3kls_A* 3km9_A* 4e0s_A* 3prx_A* 3pvm_A* 4a5w_A* 1xwe_A
Probab=43.70 E-value=30 Score=38.96 Aligned_cols=40 Identities=20% Similarity=0.244 Sum_probs=30.5
Q ss_pred EEEEeeCCcEEEEEEECCccccCCCeEEEEEEEEccccce
Q psy2082 187 KDFMLSPGDLELEVTLDKQLYAHNEKIAVSICIRNNSNKV 226 (314)
Q Consensus 187 k~f~~s~G~l~l~asldK~~Y~pGE~I~v~v~I~N~Ssk~ 226 (314)
+..++++-...+-+..||.+|.|||+|.+.+-+.|...+.
T Consensus 115 ~~v~~~~~~~~~fiqTDR~iYrPGqtV~~r~i~~d~~~~p 154 (1676)
T 3cu7_A 115 KRMPITYDNGFLFIHTDKPVYTPDQSVKVRVYSLNDDLKP 154 (1676)
T ss_dssp EEECEECCCSEEEEEESCSEECTTCEECEEEEEECTTCSC
T ss_pred EEEEEEcCCCcEEEECCCCccCCCCEEEEEEEEECCCCcc
Confidence 3445555566677889999999999999988877766554
No 22
>3idu_A Uncharacterized protein; all beta-protein, structural genomics, PSI-2, protein structure initiative; 1.70A {Pyrococcus furiosus} PDB: 2kl6_A
Probab=43.28 E-value=49 Score=26.41 Aligned_cols=39 Identities=18% Similarity=0.153 Sum_probs=30.2
Q ss_pred EEEEEEECCccccCCCeEEEEEEEEccccceeEEEEEEEE
Q psy2082 196 LELEVTLDKQLYAHNEKIAVSICIRNNSNKVVKKIKAMVQ 235 (314)
Q Consensus 196 l~l~asldK~~Y~pGE~I~v~v~I~N~Ssk~Vk~Ikv~L~ 235 (314)
|.++.+.|. -..+|+.+.+++.|.|.-+......++.|+
T Consensus 19 L~V~is~P~-~v~~G~~~ti~vtV~N~G~~~a~~~~V~ly 57 (127)
T 3idu_A 19 LTVEIKGPD-VVGVNKLAEYEVHVKNLGGIGVPSTKVRVY 57 (127)
T ss_dssp EEEEEESCS-EECTTCCEEEEEEEEECSSSCEEEEEEEEE
T ss_pred eEEEecCCC-cccCCCEEEEEEEEEECCCCccCCcEEEEE
Confidence 334444443 447899999999999999999998887774
No 23
>1ex0_A Coagulation factor XIII A chain; transglutaminase, blood coagulation, mutant, W279F, oxyanion, transferase; 2.00A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1evu_A 1fie_A 1f13_A 1ggt_A 1ggu_A 1ggy_A 1qrk_A
Probab=40.94 E-value=2.8e+02 Score=28.66 Aligned_cols=44 Identities=18% Similarity=0.406 Sum_probs=32.3
Q ss_pred cEEEEEEECCccccCCCeEEEEEEEEccccceeEEEEEEEEEeEEEEEE
Q psy2082 195 DLELEVTLDKQLYAHNEKIAVSICIRNNSNKVVKKIKAMVQQGVDVVLF 243 (314)
Q Consensus 195 ~l~l~asldK~~Y~pGE~I~v~v~I~N~Ssk~Vk~Ikv~L~Q~~~~~~~ 243 (314)
.++++..+ +...-||.+.+.+.+.|.|+.. +.+++.+ .+....|
T Consensus 517 ~v~~~i~~--~~~~iG~df~v~l~~~N~s~~~-~~v~~~l--~a~~v~Y 560 (731)
T 1ex0_A 517 NVDMDFEV--ENAVLGKDFKLSITFRNNSHNR-YTITAYL--SANITFY 560 (731)
T ss_dssp CEEEEEEE--CCCBTTCCEEEEEEEEECSSSC-EEEEEEE--EEEEECT
T ss_pred CeEEEEec--CCCCCCCCEEEEEEEEECCCCC-EEEEEEE--EEEEEee
Confidence 47777777 4555699999999999999877 6666665 3444444
No 24
>1vjj_A Protein-glutamine glutamyltransferase E; transglutaminase 3, X-RAY crystallography, metalloenzyme, calcium ION; HET: GDP; 1.90A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1sgx_A* 1l9m_A 1l9n_A* 1nud_A 1nuf_A 1nug_A 1rle_A*
Probab=40.89 E-value=87 Score=32.23 Aligned_cols=46 Identities=11% Similarity=0.214 Sum_probs=32.6
Q ss_pred CcEEEEEEECCccccCCCeEEEEEEEEccccceeEEEEEEEEEeEEEEEE
Q psy2082 194 GDLELEVTLDKQLYAHNEKIAVSICIRNNSNKVVKKIKAMVQQGVDVVLF 243 (314)
Q Consensus 194 G~l~l~asldK~~Y~pGE~I~v~v~I~N~Ssk~Vk~Ikv~L~Q~~~~~~~ 243 (314)
..++++..+.... .-||.+.+.+.+.|.|+.. +.+++.+ .+....|
T Consensus 480 ~~v~~~~~~~~~~-~~G~df~v~l~~~N~s~~~-~~v~~~l--~a~~v~Y 525 (692)
T 1vjj_A 480 PSIIGKLKVAGML-AVGKEVNLVLLLKNLSRDT-KTVTVNM--TAWTIIY 525 (692)
T ss_dssp CSEEEEEEECSCC-BTTSCEEEEEEEEECSSSC-EEEEEEE--EEEEECT
T ss_pred CCeEEEEEcCCCC-CCCCCEEEEEEEEECCCCC-EEEEEEE--EEEEEee
Confidence 4577777765544 3599999999999999876 6566665 3444445
No 25
>2b39_A C3; thioester, immune defense, immune system; HET: NAG BMA; 3.00A {Bos taurus}
Probab=37.95 E-value=52 Score=37.04 Aligned_cols=32 Identities=13% Similarity=0.116 Sum_probs=25.6
Q ss_pred cEEEEEEECCccccCCCeEEEEEEEEccccce
Q psy2082 195 DLELEVTLDKQLYAHNEKIAVSICIRNNSNKV 226 (314)
Q Consensus 195 ~l~l~asldK~~Y~pGE~I~v~v~I~N~Ssk~ 226 (314)
.-.+-+..||.+|.|||+|.+.+-+.|..-+.
T Consensus 126 ~~~~fiqTDR~iYrPGqtV~~r~i~~d~~~~p 157 (1661)
T 2b39_A 126 SGYLFIQTDKTIYTPGSTVLYRVFTVDHKLLP 157 (1661)
T ss_dssp CCEEEEEESCSEECTTSEEEEEEEEECTTSCC
T ss_pred CCcEEEecCCCccCCCCEEEEEEEEECCCCcc
Confidence 33466889999999999999988888766554
No 26
>4acq_A Alpha-2-macroglobulin; hydrolase inhibitor, proteinase inhibitor, irreversible PROT inhibitor, conformational change, blood plasma inhibitor; HET: MEQ NAG MAN; 4.30A {Homo sapiens}
Probab=34.76 E-value=77 Score=35.32 Aligned_cols=42 Identities=14% Similarity=0.227 Sum_probs=33.2
Q ss_pred EEEEeeCCcEEEEEEECCccccCCCeEEEEEEEEccccceeE
Q psy2082 187 KDFMLSPGDLELEVTLDKQLYAHNEKIAVSICIRNNSNKVVK 228 (314)
Q Consensus 187 k~f~~s~G~l~l~asldK~~Y~pGE~I~v~v~I~N~Ssk~Vk 228 (314)
+..+++...-.+=++.||.+|.|||++.+.+-.-|..-+.+.
T Consensus 95 ~~v~v~~~~~~~fiqTDK~iY~Pgq~V~~rv~~~~~~~~p~~ 136 (1451)
T 4acq_A 95 TTVMVKNEDSLVFVQTDKSIYKPGQTVKFRVVSMDENFHPLN 136 (1451)
T ss_dssp EEEEEECCCCEEEEEESCSEECTTCEEEEEEEEECTTCCBCC
T ss_pred EEEEEEccCccEEEECCCCcCCCCCEEEEEEEEECCCCcCcc
Confidence 455666666667788999999999999999888887766554
No 27
>2q3z_A Transglutaminase 2; transglutaminase 2, tissue transglutaminase, TG2, transferas; 2.00A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1kv3_A 3ly6_A*
Probab=34.44 E-value=96 Score=31.90 Aligned_cols=48 Identities=15% Similarity=0.242 Sum_probs=32.5
Q ss_pred cEEEEEEECCccccCCCeEEEEEEEEccccceeEEEEEEEEEeEEEEEEecCe
Q psy2082 195 DLELEVTLDKQLYAHNEKIAVSICIRNNSNKVVKKIKAMVQQGVDVVLFQNGQ 247 (314)
Q Consensus 195 ~l~l~asldK~~Y~pGE~I~v~v~I~N~Ssk~Vk~Ikv~L~Q~~~~~~~~~~~ 247 (314)
.++++..+.. ...-||.+.+.+.+.|.|+.. +.+++.+ .+....| +|.
T Consensus 472 ~v~~~~~~~~-~~~~G~df~v~v~~~N~s~~~-~~v~~~l--~a~~v~Y-tG~ 519 (687)
T 2q3z_A 472 GMAMRIRVGQ-SMNMGSDFDVFAHITNNTAEE-YVCRLLL--CARTVSY-NGI 519 (687)
T ss_dssp CEEEEEECCS-CCBTTCCEEEEEEEEECSSSC-EEEEEEE--EEEEECT-TCC
T ss_pred ceEEEEEeCC-CCcCCCCEEEEEEEEECCCCC-EEEEEEE--EEEEEee-CCc
Confidence 3666666544 344699999999999999877 6666665 3444445 444
No 28
>1nnx_A Protein YGIW; structural genomics, hypothetical protein, OB-fold, structure 2 function project, S2F, unknown function; 1.45A {Escherichia coli} SCOP: b.40.10.1
Probab=33.93 E-value=1.3e+02 Score=23.42 Aligned_cols=38 Identities=8% Similarity=0.236 Sum_probs=31.1
Q ss_pred EEEeeCCcEEEEEEECCcccc-----CCCeEEEEEEEEccccc
Q psy2082 188 DFMLSPGDLELEVTLDKQLYA-----HNEKIAVSICIRNNSNK 225 (314)
Q Consensus 188 ~f~~s~G~l~l~asldK~~Y~-----pGE~I~v~v~I~N~Ssk 225 (314)
.|.|+++.=++.+.||...+. |++.|.|..+|+..-+.
T Consensus 54 ~Y~F~D~TG~I~VeId~~~w~g~~v~p~~~Vri~GevDkd~~~ 96 (109)
T 1nnx_A 54 LYVFKDASGTINVDIDHKRWNGVTVTPKDTVEIQGEVDKDWNS 96 (109)
T ss_dssp EEEEEETTEEEEEECCGGGSTTCCCCTTSCEEEEEEEEEETTE
T ss_pred eEEEECCCccEEEEEChhhcCCcccCCCCEEEEEEEECCCCCc
Confidence 577988888899999998775 88999999999975543
No 29
>4fxk_B Complement C4-A alpha chain; immune system, proteolytic cascade; HET: NAG BMA; 3.60A {Homo sapiens} PDB: 4fxg_B*
Probab=27.31 E-value=27 Score=35.79 Aligned_cols=42 Identities=14% Similarity=0.177 Sum_probs=34.8
Q ss_pred eCCcEEEEEEECCccccCCCeEEEEEEEEccccceeEEEEEEEE
Q psy2082 192 SPGDLELEVTLDKQLYAHNEKIAVSICIRNNSNKVVKKIKAMVQ 235 (314)
Q Consensus 192 s~G~l~l~asldK~~Y~pGE~I~v~v~I~N~Ssk~Vk~Ikv~L~ 235 (314)
...|+.++.+||+. ..+||.+.+.+.|.|.+.+.++ +++.|.
T Consensus 150 v~kpf~v~~~lP~~-v~~GD~~~i~~~V~N~~~~~~~-v~v~l~ 191 (767)
T 4fxk_B 150 VFREFHLHLRLPMS-VRRFEQLELRPVLYNYLDKNLT-VSVHVS 191 (767)
T ss_dssp CCCSEEEECCCCSC-EETTCEEEECCEEEECSSSCEE-EEEEEC
T ss_pred EeccEEEecCCCCe-eccCCEEEEEEEEEECCCCCEE-EEEEEE
Confidence 34788899999985 6899999999999999998865 566664
No 30
>3prx_B Cobra venom factor; immune system, complement, immune SYS complex; HET: NAG; 4.30A {Naja kaouthia} PDB: 3pvm_B*
Probab=27.10 E-value=63 Score=36.56 Aligned_cols=41 Identities=17% Similarity=0.188 Sum_probs=28.2
Q ss_pred EEEEeeCCcEEEEEEECCccccCCCeEEEEEEEEcccccee
Q psy2082 187 KDFMLSPGDLELEVTLDKQLYAHNEKIAVSICIRNNSNKVV 227 (314)
Q Consensus 187 k~f~~s~G~l~l~asldK~~Y~pGE~I~v~v~I~N~Ssk~V 227 (314)
|..+++...-.+=++.||.+|.|||++.+.+-.-|..-+.+
T Consensus 117 k~V~v~~~~~~~FiqTDk~iYrPGqtV~~rvi~~~~~~~p~ 157 (1642)
T 3prx_B 117 KVVLLSYQSSFLFIQTDKGIYTPGSPVLYRVFSMDHNTSKM 157 (1642)
T ss_dssp EEEEEECCCCCEEEEESCSEECTTCEEEEEEEECCC-----
T ss_pred EEEEEEcCCCeEEEEcCCCcCCCCCEEEEEEEEEcCCCccc
Confidence 44555555566677899999999999998887777665443
No 31
>3mnm_A ADP-ribosylation factor-binding protein GGA2; IG-like, beta sandwich, protein transport; HET: MLY; 1.73A {Saccharomyces cerevisiae}
Probab=25.64 E-value=1.9e+02 Score=22.70 Aligned_cols=42 Identities=12% Similarity=0.258 Sum_probs=33.0
Q ss_pred EeeCCcEEEEEEECCccccCCCeEEEEEEEEccccceeEEEEEEE
Q psy2082 190 MLSPGDLELEVTLDKQLYAHNEKIAVSICIRNNSNKVVKKIKAMV 234 (314)
Q Consensus 190 ~~s~G~l~l~asldK~~Y~pGE~I~v~v~I~N~Ssk~Vk~Ikv~L 234 (314)
.+.+..|.++..+.|.. +| .+.+.+...|.|...|..+.+.+
T Consensus 13 ~~~~~~l~I~~~~~~~~--~~-~~~i~~~fsN~s~~~it~f~fqa 54 (123)
T 3mnm_A 13 VNQSPNLKIEFEISRES--NS-VIRIXSFFTNLSSSPISNLVFLL 54 (123)
T ss_dssp EEECSSEEEEEEEEECS--SS-CEEEEEEEEECSSSCEEEEEEEE
T ss_pred EEeCCCEEEEEEEEeCC--CC-eEEEEEEEecCCCCccccEEEEE
Confidence 46777788888888865 44 78899999999999998866543
No 32
>1kyf_A Alpha-adaptin C; protein-peptide complex, endocytosis, endocytosis/exocytosis complex; 1.22A {Mus musculus} SCOP: b.1.10.1 d.105.1.1 PDB: 1ky7_A 1kyd_A 1ky6_A 1kyu_A 1qtp_A 1qts_A 2vj0_A 1w80_A 1b9k_A
Probab=25.53 E-value=3.4e+02 Score=23.72 Aligned_cols=98 Identities=13% Similarity=0.127 Sum_probs=61.2
Q ss_pred EEEEeeCCcEEEEEEECCccccCCCeEEEEEEEEccccceeEEEEEEEEEe------EEEEEEe-------cCeEEEEEE
Q psy2082 187 KDFMLSPGDLELEVTLDKQLYAHNEKIAVSICIRNNSNKVVKKIKAMVQQG------VDVVLFQ-------NGQFRHSVD 253 (314)
Q Consensus 187 k~f~~s~G~l~l~asldK~~Y~pGE~I~v~v~I~N~Ssk~Vk~Ikv~L~Q~------~~~~~~~-------~~~~~~~Va 253 (314)
++.++.+.-|++-+..+. .|..-.+.+.+.|.|+..+..+++.+..- .++.... +.+....+
T Consensus 22 ~GVLyEd~~iQIg~kse~----~~~~gri~l~~gNKs~~~l~~f~~~i~~~~~~~~~l~~~~~~~~~~I~~~~q~qq~i- 96 (247)
T 1kyf_A 22 NGVLFENQLLQIGLKSEF----RQNLGRMFIFYGNKTSTQFLNFTPTLICADDLQTNLNLQTKPVDPTVDGGAQVQQVV- 96 (247)
T ss_dssp CEEEEECSSEEEEEEEEE----ETTEEEEEEEEEECSSSCBEEEEEEEECCHHHHHHEEEEECCCCSCBCTTCEEEEEE-
T ss_pred ceEEEECCCEEEEEEEEE----eCCeEEEEEEEEcCCCCceeeEEEEEecCcccCCCeeEecCCCCceeCCCcEEEEEE-
Confidence 567888888888887763 46677999999999999999999887542 2222110 11111111
Q ss_pred EEeeccCCCCCCCceeEEEEEEEEEEEEECCCCceeEEEEeEEEe
Q psy2082 254 CVETHLASPDPKDAFGIVVSYMVKVKLYLGALGGELSAELPFILM 298 (314)
Q Consensus 254 ~~E~~L~~~~~~~~~~I~VsY~vkV~l~v~~~~~~v~velPi~I~ 298 (314)
..|. .. ...+...+.++|..- +....+.++||++|.
T Consensus 97 ~v~~--~~-~f~~~P~l~isf~~~------g~~~~~~LkLPi~l~ 132 (247)
T 1kyf_A 97 NIEC--IS-DFTEAPVLNIQFRYG------GTFQNVSVKLPITLN 132 (247)
T ss_dssp EEEE--CS-CCCCCCEEEEEEEET------TEEEEEEEECCCCGG
T ss_pred EEEE--cc-ccCCCCEEEEEEEEC------CeeeEEEEecCcEEE
Confidence 1121 11 234567888888643 222467788898864
No 33
>2hr0_B Complement C3 alpha' chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2icf_B* 2wii_B* 2win_B* 3g6j_B 3l5n_B* 2a73_B* 2i07_B* 2xwj_B* 2xwb_B* 2a74_C* 2ice_C* 2qki_C* 3l3o_F* 3nms_C* 3nsa_C* 3ohx_C* 3t4a_C 2ice_B* 3l3o_B* 3nms_B* ...
Probab=23.05 E-value=84 Score=33.03 Aligned_cols=43 Identities=14% Similarity=0.250 Sum_probs=35.3
Q ss_pred eCCcEEEEEEECCccccCCCeEEEEEEEEcccc-ceeEEEEEEEEE
Q psy2082 192 SPGDLELEVTLDKQLYAHNEKIAVSICIRNNSN-KVVKKIKAMVQQ 236 (314)
Q Consensus 192 s~G~l~l~asldK~~Y~pGE~I~v~v~I~N~Ss-k~Vk~Ikv~L~Q 236 (314)
...|+.++.+||+ ...+||.+.+.+.|.|.+. +.++ +.+.|..
T Consensus 77 v~kp~~v~~~LP~-~v~~GD~~~i~~~v~N~~~~~~~~-v~v~l~~ 120 (915)
T 2hr0_B 77 VMQDFFIDLRLPY-SVVRNEQVEIRAVLYNYRQNQELK-VRVELLH 120 (915)
T ss_dssp ECCSSEEEEECCS-EEETTCCEEEEEEEEECCSSCCEE-EEEEECC
T ss_pred EeccEEEEccCCC-EEecCcEEEEEEEEEcCCCCeeEE-EEEEEec
Confidence 3478889999998 4689999999999999999 8754 6666643
No 34
>1gvp_A Gene V protein; DNA-binding protein, DNA replication; 1.60A {Escherichia coli} SCOP: b.40.4.7 PDB: 1vqb_A 2gn5_A 1vqj_A 1vqi_A 1vqg_A 1vqh_A 1vqf_A 1yhb_A 1yha_A 2gva_A 2gvb_A 1vqd_A 1vqe_A 1gkh_A 1vqc_A 1ae2_A 1vqa_A 1ae3_A
Probab=22.43 E-value=30 Score=26.21 Aligned_cols=46 Identities=13% Similarity=0.094 Sum_probs=26.6
Q ss_pred chhhhhhhccCCCeeEeEEeeCCCC----CCCeEEecCCCCCCCCCeEEE
Q psy2082 97 TKMQDCLLKKLGPKAYPFTFNITPA----APPSVTLQPGPDETGEPCGVT 142 (314)
Q Consensus 97 t~lq~~l~~k~G~h~fPF~f~LP~~----lPsSf~lq~~~~~~G~~g~V~ 142 (314)
+.-|+..+..-|.+..||.+.|-++ -|.-+++.|.+-..+++|++.
T Consensus 28 ~reQ~a~v~lGG~fp~~~~v~Le~gQppY~~G~Y~ihp~S~~v~~~G~L~ 77 (87)
T 1gvp_A 28 LNEQLCYVDLGNEYPVLVKITLDEGQPAYAPGLYTVHLSSFKVGQFGSLM 77 (87)
T ss_dssp EEEEEEEECCSSSSCEEEEEECCTTCCCCCSEEEEECGGGEEECTTSSEE
T ss_pred EEEEEEEEEcCCCccEEEEEecCCCCCCCCCceEEEchHHEEEcccCcEE
Confidence 3345555554677899999999443 444555544433345556543
No 35
>2rqx_A PMRD, polymyxin B resistance protein; signaling protein; NMR {Klebsiella pneumoniae}
Probab=21.74 E-value=2.3e+02 Score=21.20 Aligned_cols=43 Identities=23% Similarity=0.437 Sum_probs=34.6
Q ss_pred eeCCcEEEEEEECC--ccccCCCeEE----EEEEEEccccceeEEEEEE
Q psy2082 191 LSPGDLELEVTLDK--QLYAHNEKIA----VSICIRNNSNKVVKKIKAM 233 (314)
Q Consensus 191 ~s~G~l~l~asldK--~~Y~pGE~I~----v~v~I~N~Ssk~Vk~Ikv~ 233 (314)
+++|+|+|-|.+.- ....+|+-+. ..-.|+|+-+++||=|+++
T Consensus 21 L~gGaLkMIAEv~s~~~~~k~GDlLsPL~dA~YCiNrn~~~tvKii~As 69 (89)
T 2rqx_A 21 LQSGALEMIAEIEACRLRLREGDKLTPLADARYCLNNNPTQTLKIRNAT 69 (89)
T ss_dssp EEETTEEEEEEEECSCCCCCTTCEEEECSSSCEEETTCTTSEEEEEEEE
T ss_pred EeCchHHHHHHHhhcccccccccccccchhhhhhhcCCCCceEEEEecc
Confidence 68999999998876 5668999774 3678999999998877654
No 36
>1g0d_A Protein-glutamine gamma-glutamyltransferase; tissue transglutaminase,acyltransferase; 2.50A {Pagrus major} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4
Probab=21.59 E-value=1.4e+02 Score=30.69 Aligned_cols=45 Identities=13% Similarity=0.262 Sum_probs=33.1
Q ss_pred CcEEEEEEECCccccCCCeEEEEEEEEccccceeEEEEEEEEEeEEEEEE
Q psy2082 194 GDLELEVTLDKQLYAHNEKIAVSICIRNNSNKVVKKIKAMVQQGVDVVLF 243 (314)
Q Consensus 194 G~l~l~asldK~~Y~pGE~I~v~v~I~N~Ssk~Vk~Ikv~L~Q~~~~~~~ 243 (314)
..+++...+.... -||.+.+.+.+.|.|+.. +.+++.+ .+....|
T Consensus 471 ~~v~~~i~~~~~~--~G~df~v~v~~~N~s~~~-~~v~~~l--~a~~v~Y 515 (695)
T 1g0d_A 471 GRLQLSIKHAQPV--FGTDFDVIVEVKNEGGRD-AHAQLTM--LAMAVTY 515 (695)
T ss_dssp -CEEEEEEECCCB--TTCCEEEEEEEEECSSSC-EEEEEEE--EEEEECT
T ss_pred CCeEEEEEeCCCC--CCCCEEEEEEEEECCCCC-EEEEEEE--EEEEEee
Confidence 4578888887777 799999999999999877 6566665 3333444
No 37
>2jp2_A Spred-2, sprouty-related, EVH1 domain-containing protein 2; solution structure, structural genomics, structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=20.46 E-value=32 Score=27.62 Aligned_cols=55 Identities=24% Similarity=0.283 Sum_probs=34.9
Q ss_pred EEEEe-------cceeeEecCCCceeeeeEEEEecceeeceeEEEEEEEeeecccccc--cccCccccc
Q psy2082 17 LTLYM-------GKRDFVDYVTGVEPIDGVVVFEEDYIQDRKVFGQVVCSFRYGREED--EILGLNFQK 76 (314)
Q Consensus 17 ~t~yl-------~~rd~~d~~~~vd~v~GvV~vd~~~lk~rkv~~~~~~~fryG~~d~--dv~gl~f~k 76 (314)
+++|+ ++|.|.-..- +--|+-|+++-+-.++ -+|-+.+-+| +++.. -+.||+|..
T Consensus 43 v~v~~~~~~~d~~~~~yrI~~~--~l~d~~vv~~~~l~~~-l~Y~~~~p~F--H~w~~~~~~~GLnF~s 106 (126)
T 2jp2_A 43 VGVCKVMHPEGNGRSGFLIHGE--RQKDKLVVLECYVRKD-LVYTKANPTF--HHWKVDNRKFGLTFQS 106 (126)
T ss_dssp EEEECCBCTTCSSCBCEEEEEE--ESSSSCEEEEEEESSC-CCEEEEETTE--EEEECSSSEEEEEESS
T ss_pred EEEEEecCCCCCCCCEEEEEEE--EcCCCeEEEEEEEeCC-ceEEecCCcc--eEEEcCCEEEEEecCC
Confidence 77786 5577776654 3226778888665444 3566666666 44433 388888875
Done!