RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy2082
(314 letters)
>gnl|CDD|215866 pfam00339, Arrestin_N, Arrestin (or S-antigen), N-terminal domain.
Ig-like beta-sandwich fold. Scop reports duplication
with C-terminal domain.
Length = 148
Score = 100 bits (250), Expect = 7e-26
Identities = 49/166 (29%), Positives = 74/166 (44%), Gaps = 27/166 (16%)
Query: 17 LTLYMGKRDFVDYVTGVEPIDGVVVFEED-YIQDRKVFGQVVCSFRYGREEDEILGLNFQ 75
T+Y+ K D V + EP+ G V+ I+ R V + R G EE E++GL F+
Sbjct: 1 FTIYLDKPDPVYHPG--EPVSGKVLLTTKKPIKARAVKITLKGRARTGWEESEVMGLTFR 58
Query: 76 KELYLASEQIYPRSEKQHTSLTKMQDCLLKK--------LGPKAYPFTFNITPAAPPSVT 127
K++Y K+ + Q+ L KK G A+PF+F + P PPS
Sbjct: 59 KQIY-----PTVNYSKE--TYLDTQERLWKKKDGSNELPAGTHAFPFSFELPPNCPPSFE 111
Query: 128 LQPGPDETGEPCGVTYYVKLFVGENETDRSHRRSTVALGIRKIQYA 173
QPG G+ Y VK+ + + + H+R V IRK+
Sbjct: 112 GQPG--------GIRYEVKVEL-DRPWKKDHKRKKVFTVIRKLDLN 148
>gnl|CDD|214976 smart01017, Arrestin_C, Arrestin (or S-antigen), C-terminal domain.
Ig-like beta-sandwich fold. Scop reports duplication
with N-terminal domain. Arrestins comprise a family of
closely-related proteins that includes beta-arrestin-1
and -2, which regulate the function of beta-adrenergic
receptors by binding to their phosphorylated forms,
impairing their capacity to activate G(S) proteins; Cone
photoreceptors C-arrestin (arrestin-X). which could bind
to phosphorylated red/green opsins; and Drosophila
phosrestins I and II, which undergo light-induced
phosphorylation, and probably play a role in
photoreceptor transduction.
Length = 142
Score = 80.5 bits (199), Expect = 1e-18
Identities = 40/141 (28%), Positives = 48/141 (34%), Gaps = 31/141 (21%)
Query: 192 SPGDLELEVTLDKQLYAHNEKIAVSICIRNNSNKVVKKIKAMVQQGVDVVLFQNG--QFR 249
G L LEV+L K+ Y E I V+I I N S K VKKIK + Q V V +
Sbjct: 1 WSGPLSLEVSLPKKGYVPGETIPVTIKITNLSKKTVKKIKVSLVQTVTYVSSDGPVKRSL 60
Query: 250 HSVDC-------------------------VETHLASPDP----KDAFGIVVSYMVKVKL 280
E L P + I V Y +KVKL
Sbjct: 61 AEKSKEKKADRKTLVKELDGGPVLPGNKDKFEGQLKVPPLPPTSRTCRLIKVEYKLKVKL 120
Query: 281 YLGALGGELSAELPFILMHPK 301
L EL ELP +
Sbjct: 121 RLSGKHSELRLELPITIGTVP 141
>gnl|CDD|217215 pfam02752, Arrestin_C, Arrestin (or S-antigen), C-terminal domain.
Ig-like beta-sandwich fold. Scop reports duplication
with N-terminal domain.
Length = 136
Score = 75.5 bits (186), Expect = 6e-17
Identities = 35/135 (25%), Positives = 51/135 (37%), Gaps = 25/135 (18%)
Query: 192 SPGDLELEVTLDKQLYAHNEKIAVSICIRNNSNKVVKKIKAMVQQGVDVVLFQNGQFRHS 251
G + L V+L K+ Y E I +++ I N S+K +KKIK + Q V + +
Sbjct: 1 WSGPVSLSVSLPKKGYVPGETIPITVEIDNQSSKKIKKIKISLVQQVTYKAKTPLRRTKN 60
Query: 252 VDCV----ETHLASPDPKDAF---------------------GIVVSYMVKVKLYLGALG 286
+ V E+ P D F I VSY +KV + L
Sbjct: 61 EERVVAKEESGGVEPGSSDKFEKELSLQIPTSLPPSSTTKCKIIKVSYKLKVTVDLSGSH 120
Query: 287 GELSAELPFILMHPK 301
EL ELP +
Sbjct: 121 SELRLELPITIGTSP 135
>gnl|CDD|235601 PRK05773, PRK05773, 3,4-dihydroxy-2-butanone 4-phosphate
synthase; Validated.
Length = 219
Score = 31.2 bits (71), Expect = 0.53
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 50 RKVFGQVVCSFRYGREEDEILGLNFQKELYLASEQIYPRSEK 91
RK G ++C + E + LGLNF E L ++Y + K
Sbjct: 46 RKNAGGLIC-YATSNSEGKTLGLNFLAE-ILKRHELYRKLVK 85
>gnl|CDD|107289 cd06294, PBP1_ycjW_transcription_regulator_like, Ligand-binding
domain of uncharacterized transcription regulator ycjW
which is a member of the LacI-GalR family repressors.
This group includes the ligand-binding domain of
uncharacterized transcription regulator ycjW which is a
member of the LacI-GalR family repressors that are
composed of two functional domains: an N-terminal HTH
(helix-turn-helix) domain, which is responsible for the
DNA-binding specificity, and a C-terminal ligand-binding
domain, which is homologous to the sugar-binding domain
of ABC-type transport systems that contain the type I
periplasmic binding protein-like fold. As also observed
in the periplasmic binding proteins, the C-terminal
domain of the bacterial transcription repressor
undergoes a conformational change upon ligand binding
which in turn changes the DNA binding affinity of the
repressor.
Length = 270
Score = 30.6 bits (70), Expect = 0.88
Identities = 9/34 (26%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 207 YAHNEKIAVSICIRNNSNKVVKKIKAMVQQG-VD 239
A+ +S+ N ++++++K M+QQ VD
Sbjct: 29 VANENGYDISLATGKNEEELLEEVKKMIQQKRVD 62
>gnl|CDD|192572 pfam10405, BHD_3, Rad4 beta-hairpin domain 3. This short domain
is found in the Rad4 protein. This domain binds to DNA.
Length = 75
Score = 27.1 bits (61), Expect = 2.5
Identities = 13/32 (40%), Positives = 14/32 (43%), Gaps = 8/32 (25%)
Query: 25 DFVDYVTG-------VEP-IDGVVVFEEDYIQ 48
DF VTG P IDG+VV EE
Sbjct: 39 DFAPAVTGFDFKGGRAHPVIDGIVVAEEFADA 70
>gnl|CDD|234474 TIGR04113, cas_csx17, CRISPR-associated protein Csx17, subtype
Dpsyc. Members of this protein family are found
exclusively in CRISPR-associated (cas) type I system
gene clusters of the Dpsyc subtype. Markers for that
type include a variant form of cas3 (model TIGR02621)
and the GSU0054-like protein family (model TIGR02165).
This family occurs in less than half of known Dpsyc
clusters.
Length = 704
Score = 28.9 bits (65), Expect = 4.4
Identities = 11/38 (28%), Positives = 17/38 (44%), Gaps = 5/38 (13%)
Query: 105 KKLGPK-----AYPFTFNITPAAPPSVTLQPGPDETGE 137
K+LG + ++PFT + A SV + D E
Sbjct: 257 KRLGAQSGSTLSFPFTVRPSAAGFGSVATEDEGDARAE 294
>gnl|CDD|236280 PRK08515, flgA, flagellar basal body P-ring biosynthesis protein
FlgA; Reviewed.
Length = 222
Score = 28.0 bits (63), Expect = 5.2
Identities = 17/78 (21%), Positives = 30/78 (38%), Gaps = 18/78 (23%)
Query: 156 RSHRRSTVALGIRKIQYAPSKNGRQPCTVVRKD----FMLSPGDLELEVTLD-KQLYAHN 210
+S L K + +VRK+ +L G + +E++L Q
Sbjct: 146 KSFIPPGTILTADKFK---------ALILVRKNDIINGVLKEGGVSIEISLKALQDGNLG 196
Query: 211 EKIAVSICIRNNSNKVVK 228
+ I +N SNK++K
Sbjct: 197 DIIQA----KNKSNKILK 210
>gnl|CDD|107303 cd06308, PBP1_sensor_kinase_like, Periplasmic binding domain of
two-component sensor kinase signaling systems.
Periplasmic binding domain of two-component sensor
kinase signaling systems, some of which are fused with a
C-terminal histidine kinase A domain (HisK) and/or a
signal receiver domain (REC). Members of this group
share homology with a family of pentose/hexose
sugar-binding proteins of the type I periplasmic binding
protein superfamily and are predicted to be involved in
sensing of environmental stimuli; their substrate
specificities, however, are not known in detail.
Length = 270
Score = 27.6 bits (62), Expect = 7.3
Identities = 7/23 (30%), Positives = 17/23 (73%)
Query: 220 RNNSNKVVKKIKAMVQQGVDVVL 242
++++K V I+ ++QGVD+++
Sbjct: 39 ADDNSKQVADIENFIRQGVDLLI 61
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.137 0.402
Gapped
Lambda K H
0.267 0.0713 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 15,888,354
Number of extensions: 1534622
Number of successful extensions: 1182
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1177
Number of HSP's successfully gapped: 13
Length of query: 314
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 217
Effective length of database: 6,635,264
Effective search space: 1439852288
Effective search space used: 1439852288
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.5 bits)