RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2082
(314 letters)
>3ugu_A S-arrestin; arrestin fold, signal termination, GPCR, outer segment,
SIGN protein; 1.85A {Bos taurus} PDB: 3ugx_A 1cf1_A
1ayr_A
Length = 380
Score = 352 bits (903), Expect = e-121
Identities = 118/355 (33%), Positives = 189/355 (53%), Gaps = 55/355 (15%)
Query: 1 MVANFKVFKKCSPNGKLTLYMGKRDFVDYVTGVEPIDGVVVFEEDYIQDRKVFGQVVCSF 60
N +FKK S + +T+Y+GKRD++D+V VEP+DGVV+ + + ++ ++V+ + C+F
Sbjct: 16 PAPNHVIFKKISRDKSVTIYLGKRDYIDHVERVEPVDGVVLVDPELVKGKRVYVSLTCAF 75
Query: 61 RYGREEDEILGLNFQKELYLASEQIYPRSEKQHTSLTKMQDCLLKKLGPKAYPFTFNITP 120
RYG+E+ +++GL+F+++LY + Q++P + T++Q+ L+KKLG YPF
Sbjct: 76 RYGQEDIDVMGLSFRRDLYFSQVQVFPPVGAS-GATTRLQESLIKKLGANTYPFLLTFPD 134
Query: 121 AAPPSVTLQPGPDETGEPCGVTYYVKLFVGEN---ETDRSHRRSTVALGIRKIQYAPSKN 177
P SV LQP P + G+ CGV + +K F + E D+ ++S+V L IRK+Q+AP
Sbjct: 135 YLPCSVMLQPAPQDVGKSCGVDFEIKAFATHSTDVEEDKIPKKSSVRLLIRKVQHAPRDM 194
Query: 178 GRQPCTVVRKDFMLSPGDLELEVTLDKQLYAHNEKIAVSICIRNNSNKVVKKIKAMVQQG 237
G QP F +S L L V+L K++Y H E I V++ + N++ K VKKIK +V+Q
Sbjct: 195 GPQPRAEASWQFFMSDKPLRLAVSLSKEIYYHGEPIPVTVAVTNSTEKTVKKIKVLVEQV 254
Query: 238 VDVVLFQNGQFRHSVDCVE----------------------------------------- 256
+VVL+ + + +V E
Sbjct: 255 TNVVLYSSDYYIKTVAAEEAQEKVPPNSSLTKTLTLVPLLANNRERRGIALDGKIKHEDT 314
Query: 257 -----THLASPDPKDAFGIVVSYMVKVKLYLGALGG-----ELSAELPFILMHPK 301
T + K GI+VSY +KVKL + L G E++ E+PF LMHP+
Sbjct: 315 NLASSTIIKEGIDKTVMGILVSYQIKVKLTVSGLLGELTSSEVATEVPFRLMHPQ 369
>1g4m_A Beta-arrestin1; sensory transduction, alternative splicing,
signaling protein; 1.90A {Bos taurus} SCOP: b.1.18.11
b.1.18.11 PDB: 1g4r_A 3gd1_C 1jsy_A 1zsh_A* 2wtr_A
2wtr_B 3gc3_A 3p2d_A
Length = 393
Score = 350 bits (898), Expect = e-120
Identities = 147/349 (42%), Positives = 210/349 (60%), Gaps = 53/349 (15%)
Query: 6 KVFKKCSPNGKLTLYMGKRDFVDYVTGVEPIDGVVVFEEDYIQDRKVFGQVVCSFRYGRE 65
+VFKK SPNGKLT+Y+GKRDFVD++ VEP+DGVV+ + +Y+++R+V+ + C+FRYGRE
Sbjct: 7 RVFKKASPNGKLTVYLGKRDFVDHIDLVEPVDGVVLVDPEYLKERRVYVTLTCAFRYGRE 66
Query: 66 EDEILGLNFQKELYLASEQIYPRSEKQHTSLTKMQDCLLKKLGPKAYPFTFNITPAAPPS 125
+ ++LGL F+K+L++A+ Q +P + + LT++Q+ L+KKLG AYPFTF I P P S
Sbjct: 67 DLDVLGLTFRKDLFVANVQSFPPAPEDKKPLTRLQERLIKKLGEHAYPFTFEIPPNLPCS 126
Query: 126 VTLQPGPDETGEPCGVTYYVKLFVGENETDRSHRRSTVALGIRKIQYAPSKNGRQPCTVV 185
VTLQPGP++TG+ CGV Y VK F EN ++ H+R++V L IRK+QYAP + G QP
Sbjct: 127 VTLQPGPEDTGKACGVDYEVKAFCAENLEEKIHKRNSVRLVIRKVQYAPERPGPQPTAET 186
Query: 186 RKDFMLSPGDLELEVTLDKQLYAHNEKIAVSICIRNNSNKVVKKIKAMVQQGVDVVLFQN 245
+ F++S L LE +LDK++Y H E I+V++ + NN+NK VKKIK V+Q D+ LF
Sbjct: 187 TRQFLMSDKPLHLEASLDKEIYYHGEPISVNVHVTNNTNKTVKKIKISVRQYADICLFNT 246
Query: 246 GQFRHSVDCVE----------------------------------------------THL 259
Q++ V E T L
Sbjct: 247 AQYKCPVAMEEADDTVAPSSTFCKVYTLTPFLANNREKRGLALDGKLKHEDTNLASSTLL 306
Query: 260 ASPDPKDAFGIVVSYMVKVKLYLGALG-------GELSAELPFILMHPK 301
++ GI+VSY VKVKL + G +++ ELPF LMHPK
Sbjct: 307 REGANREILGIIVSYKVKVKLVVSRGGLLGDLASSDVAVELPFTLMHPK 355
>1suj_A CONE arrestin; sensory transduction, signaling protein; 2.38A
{Ambystoma tigrinum}
Length = 392
Score = 348 bits (894), Expect = e-119
Identities = 144/354 (40%), Positives = 205/354 (57%), Gaps = 55/354 (15%)
Query: 1 MVANFKVFKKCSPNGKLTLYMGKRDFVDYVTGVEPIDGVVVFEEDYIQDRKVFGQVVCSF 60
M KV+KK PN KL++Y+GKRDFVD+V VEP+DGVV+ + +Y++DRKVF + C+F
Sbjct: 1 MADGSKVYKKTCPNAKLSIYLGKRDFVDHVEHVEPVDGVVLIDPEYLKDRKVFVTLTCAF 60
Query: 61 RYGREEDEILGLNFQKELYLASEQIYPRSEKQHTSLTKMQDCLLKKLGPKAYPFTFNITP 120
RYGR++ +++G++F+K+LY + Q+YP K+ LT +Q+ L+KKLG AYPF F +
Sbjct: 61 RYGRDDLDLIGMSFRKDLYSLATQVYPPETKE--PLTPLQEKLMKKLGAHAYPFCFKMGT 118
Query: 121 AAPPSVTLQPGPDETGEPCGVTYYVKLFVGENETDRSHRRSTVALGIRKIQYAPSKNGRQ 180
P SVTLQPGPD+TG+ CGV + VK F EN ++ H+R++V L IRK+Q+AP+ G
Sbjct: 119 NLPCSVTLQPGPDDTGKSCGVDFEVKAFCAENLEEKIHKRNSVQLVIRKVQFAPANLGVA 178
Query: 181 PCTVVRKDFMLSPGDLELEVTLDKQLYAHNEKIAVSICIRNNSNKVVKKIKAMVQQGVDV 240
P T + + FMLS L LE +LDK++Y H E I V++ I N + K+VKKIK +V+Q DV
Sbjct: 179 PKTEITRQFMLSDRPLHLEASLDKEIYYHGEPINVNVKINNTTGKIVKKIKIIVEQVTDV 238
Query: 241 VLFQNGQFRHSVDCVE-------------------------------------------- 256
VLF ++ +V E
Sbjct: 239 VLFSLDKYVKTVCAEETNDTVAANSTLSKTFSVTPMLANNREKRGLALDGKLKHEDTNLA 298
Query: 257 --THLASPDPKDAFGIVVSYMVKVKLYLGALG-------GELSAELPFILMHPK 301
T + K+ GI+VSY VKV L + G +++ ELP LMHPK
Sbjct: 299 STTVIRPGMDKEVLGILVSYKVKVHLVVARGGILGDLTSSDVAVELPLTLMHPK 352
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 42.3 bits (99), Expect = 2e-04
Identities = 74/458 (16%), Positives = 129/458 (28%), Gaps = 196/458 (42%)
Query: 26 FVDYVTG-VEP-----IDGVVV-----FEEDYIQDRKVFGQVVCSFRYGREEDEILGLNF 74
F+ YV+ VEP D V+ FE Y++ + + ++ L
Sbjct: 64 FLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHA-LAAKL----LQENDTTLVK 118
Query: 75 QKEL---YLASEQIYPRS-EKQHTS--------------------------LTKMQD--- 101
KEL Y+ + + R +K+ S +++D
Sbjct: 119 TKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQ 178
Query: 102 --------------CLLKKL------GPKAYPFTFNI-----TPAAPPS----------- 125
L +L K + NI P+ P
Sbjct: 179 TYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISC 238
Query: 126 ------------VTLQ-----PGPDETGEPCGVTYYVK-----LFVGENETDRS-HRRST 162
VT + PG + G T + + + + E ++ S
Sbjct: 239 PLIGVIQLAHYVVTAKLLGFTPG-ELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVR 297
Query: 163 VAL------GIRKIQYAPS------------KNGR-QPCTVVRKDFMLSPGDLELEVTLD 203
A+ G+R + P+ +N P MLS +L E +
Sbjct: 298 KAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPS------PMLSISNLTQE-QVQ 350
Query: 204 KQLYAHNEKI----AVSICIRNNSNKVV---------------KKIKAMVQQGVDV---- 240
+ N + V I + N + +V +K KA G+D
Sbjct: 351 DYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKA--PSGLDQSRIP 408
Query: 241 -----VLFQNGQFR------HS------VDCVETHLASPDPKDAFGIVVSYMVKVKLY-- 281
+ F N +F HS D + L K+ + ++ +Y
Sbjct: 409 FSERKLKFSN-RFLPVASPFHSHLLVPASDLINKDLV----KNNVSFNAKDI-QIPVYDT 462
Query: 282 -----LGALGGELSAEL-PFILMHPKVR----LKMSAT 309
L L G +S + I+ P V+ + AT
Sbjct: 463 FDGSDLRVLSGSISERIVDCIIRLP-VKWETTTQFKAT 499
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 36.1 bits (82), Expect = 0.005
Identities = 10/31 (32%), Positives = 13/31 (41%), Gaps = 4/31 (12%)
Query: 90 EKQHTSLTKMQDCLLKKLGPKAYP-FTFNIT 119
EKQ +L K+Q L K + P T
Sbjct: 18 EKQ--ALKKLQASL-KLYADDSAPALAIKAT 45
Score = 28.0 bits (61), Expect = 2.9
Identities = 9/39 (23%), Positives = 18/39 (46%), Gaps = 15/39 (38%)
Query: 197 ELEVTLDKQLYAHNEKIAVSICIRNNSNKVVKKIKAMVQ 235
+L+ +L +LYA + A++ IKA ++
Sbjct: 24 KLQASL--KLYADDSAPALA-------------IKATME 47
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 30.2 bits (67), Expect = 1.2
Identities = 41/304 (13%), Positives = 94/304 (30%), Gaps = 106/304 (34%)
Query: 27 VDYVTGVEPI---DGVVVFEEDYIQD----------RKVFGQVVCSFRYGREEDEILGL- 72
+D+ TG D + VFE+ ++ + + + + E D I+
Sbjct: 7 MDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSK--------EEIDHIIMSK 58
Query: 73 NFQKELYLASEQIYPRSEKQHTSLTKMQDCLLKKLGPKAYPFTFNITPAAPPSVTLQPGP 132
+ + KQ + K + +L+ Y F + ++
Sbjct: 59 DAVSGTLRLFWTL---LSKQEEMVQKFVEEVLR----INYKFLMS---------PIK--- 99
Query: 133 DETGEPCGVTYYVKLFVGENETDRSHRRSTVALGIRKIQYAPSKNGR-QPCTVVRKDFM- 190
E +P +T ++++ + DR + + V +A R QP +R+ +
Sbjct: 100 TEQRQPSMMT---RMYI--EQRDRLYNDNQV--------FAKYNVSRLQPYLKLRQALLE 146
Query: 191 LSPGD--------------LELEVTLDKQLYAHNEK----IAVSICIRNNS-----NKVV 227
L P + L+V L ++ + + + C + K++
Sbjct: 147 LRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLL 206
Query: 228 KKIKAMVQQGVDVV----------------LFQNGQFRHS---VDCVETHLASPDPK--D 266
+I D L ++ + + + V+ + K +
Sbjct: 207 YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQ------NAKAWN 260
Query: 267 AFGI 270
AF +
Sbjct: 261 AFNL 264
>1egx_A VAsp, vasodilator-stimulated phosphoprotein; EVH1, VAsp-ENA,
poly-proline-binding domain, signaling protein; NMR
{Homo sapiens} SCOP: b.55.1.4
Length = 115
Score = 27.3 bits (60), Expect = 3.3
Identities = 11/49 (22%), Positives = 18/49 (36%)
Query: 29 YVTGVEPIDGVVVFEEDYIQDRKVFGQVVCSFRYGREEDEILGLNFQKE 77
V G + V I + Q +F R+ ++ GLNF +
Sbjct: 48 RVVGRKMQPDQQVVINCAIVRGVKYNQATPNFHQWRDARQVWGLNFGSK 96
>2ela_A Adapter protein containing PH domain, PTB domain and leucine zipper
motif 1; APPL, cell cycle; 2.00A {Homo sapiens}
Length = 175
Score = 27.3 bits (60), Expect = 4.4
Identities = 17/106 (16%), Positives = 34/106 (32%), Gaps = 4/106 (3%)
Query: 123 PPSVTLQPGPDETGEP-CGVTYYVKLFVGENETDRSHRRSTVALGIRKIQYAPSKNGRQP 181
S + G T + + V+ F+G E V +R+I A + +
Sbjct: 10 HSSGLVPRGSHMTEDSILHQLFIVR-FLGSMEVKSDDHPDVVYETMRQILAARAIHNIFR 68
Query: 182 CTVVRKDFMLSPGDLELEVTLDKQLYAHNEKIAVSICIRNNSNKVV 227
T +++ L+L + V + + NK +
Sbjct: 69 MTES--HLLVTCDCLKLIDPQTQVTRLTFPLPCVVLYATHQENKRL 112
>3n05_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics,
protein structure initiative, P nysgrc; 2.35A
{Streptomyces avermitilis}
Length = 590
Score = 27.7 bits (62), Expect = 6.1
Identities = 6/25 (24%), Positives = 13/25 (52%)
Query: 219 IRNNSNKVVKKIKAMVQQGVDVVLF 243
I N+ +++ + +QG +V F
Sbjct: 19 IAGNAEAILRWTRHSAEQGAHLVAF 43
>2pg0_A Acyl-COA dehydrogenase; GK1316, geobacillus kaustophilus HTA
structural genomics, PSI, protein structure initiative;
HET: FAD; 1.80A {Geobacillus kaustophilus}
Length = 385
Score = 27.5 bits (62), Expect = 6.4
Identities = 6/16 (37%), Positives = 9/16 (56%)
Query: 45 DYIQDRKVFGQVVCSF 60
Y++ R FG+ V F
Sbjct: 269 QYVKQRTAFGKRVSEF 284
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.137 0.402
Gapped
Lambda K H
0.267 0.0513 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,792,411
Number of extensions: 292126
Number of successful extensions: 651
Number of sequences better than 10.0: 1
Number of HSP's gapped: 645
Number of HSP's successfully gapped: 20
Length of query: 314
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 221
Effective length of database: 4,105,140
Effective search space: 907235940
Effective search space used: 907235940
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.2 bits)